CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_011776	Bacillus cereus AH820 plasmid pAH820_3, complete sequence	0 crisprs	NA	0
NC_011773	Bacillus cereus AH820, complete genome	5 crisprs	cas3,csa3,WYL,cas14k,DinG,DEDDh,RT,cas14j	7
NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	0 crisprs	RT,cas14j,csa3	0
NC_011771	Bacillus cereus AH820 plasmid pAH820_10, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011773_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011773_1

1108627-1108720

Orphan

Consensus_repeat	Method
GGTTTAAATACGTTAAATAGCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011773_1

>merge|NC_011773|1|1108627-1108720|CRISPRCasFinder
GGTTTAAATACGTTAAATAGCAAAAGCGGTATAGGGAAATTACAAGATGGATCCGGAAAAGTAACAGACGGTTTAAATACGTTAAATAGTAAAA

>NC_011773|1|1|1108627-1108720|CRISPRCasFinder
GGTTTAAATACGTTAAATAGCAAAA	GCGGTATAGGGAAATTACAAGATGGATCCGGAAAAGTAACAGAC
GGTTTAAATACGTTAAATAGTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011773.1\|WP_000963375.1\|1107110_1107683_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_011773.1\|WP_000567010.1\|1113521_1113650_-\|YhfH-family-protein	unknown	unknown	gnl\|CDD\|379490
NC_011773.1\|WP_000726793.1\|1099069_1100005_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|183526
NC_011773.1\|WP_000252615.1\|1098008_1099055_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NC_011773.1\|WP_001228084.1\|1100024_1101446_+\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|237009
NC_011773.1\|WP_002157388.1\|1110650_1110866_+\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000140276.1\|1110902_1111208_+\|DUF2087-domain-containing-protein	unknown	unknown	gnl\|CDD\|378279
NC_011773.1\|WP_000644073.1\|1095086_1095584_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NC_011773.1\|WP_000897260.1\|1114573_1115563_+\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920
NC_011773.1\|WP_001068231.1\|1111234_1111588_-\|PlcR-regulated-protein-PRP2	unknown	unknown	gnl\|CDD\|379617
NC_011773.1\|WP_000620029.1\|1111721_1112231_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_011773.1\|WP_000756259.1\|1095711_1097829_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NC_011773.1\|WP_000453716.1\|1101485_1102838_-\|DUF4026-domain-containing-protein	unknown	unknown	gnl\|CDD\|338635
NC_011773.1\|WP_000832636.1\|1115817_1116285_+\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000279255.1\|1103078_1105445_+\|endonuclease	unknown	unknown	gnl\|CDD\|225249
NC_011773.1\|WP_000103718.1\|1112468_1113482_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_011773.1\|WP_000984159.1\|1105945_1106785_-\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000784658.1\|1113829_1114564_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NC_011773.1\|WP_003170543.1\|1105595_1105949_+\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_001055188.1\|1116407_1117940_+\|fatty-acid--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|236072

Protein	Function_ID	Function_description	E-value
NC_011773.1\|WP_000963375.1\|1107110_1107683_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.13636e-15
NC_011773.1\|WP_000567010.1\|1113521_1113650_-\|YhfH-family-protein	gnl\|CDD\|379490	pfam14149, YhfH, YhfH-like protein. The YhfH-like protein family includes the B. subtilis YhfH protein, which is functionally uncharacterized. Its expression is repressed by the Spx paralogue MgsR, which regulates genes involved in stress response. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 53 amino acids in length.	3.52581e-13
NC_011773.1\|WP_000726793.1\|1099069_1100005_+\|ferrochelatase	gnl\|CDD\|183526	PRK12435, PRK12435, ferrochelatase; Provisional.	0
NC_011773.1\|WP_000252615.1\|1098008_1099055_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NC_011773.1\|WP_001228084.1\|1100024_1101446_+\|protoporphyrinogen-oxidase	gnl\|CDD\|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	0
NC_011773.1\|WP_001055188.1\|1116407_1117940_+\|fatty-acid--CoA-ligase-family-protein	gnl\|CDD\|236072	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.	0
NC_011773.1\|WP_000140276.1\|1110902_1111208_+\|DUF2087-domain-containing-protein	gnl\|CDD\|378279	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087). This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function. Structural modelling suggests this domain may bind nucleic acids.	1.60375e-24
NC_011773.1\|WP_000644073.1\|1095086_1095584_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	5.47524e-21
NC_011773.1\|WP_000897260.1\|1114573_1115563_+\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	4.02345e-137
NC_011773.1\|WP_001068231.1\|1111234_1111588_-\|PlcR-regulated-protein-PRP2	gnl\|CDD\|379617	pfam14470, bPH_3, Bacterial PH domain. Proteins in this family are distantly related to PH domains.	8.04662e-16
NC_011773.1\|WP_000620029.1\|1111721_1112231_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.97148e-16
NC_011773.1\|WP_000756259.1\|1095711_1097829_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_011773.1\|WP_000453716.1\|1101485_1102838_-\|DUF4026-domain-containing-protein	gnl\|CDD\|338635	pfam13218, DUF4026, Protein of unknown function (DUF4026). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 450 amino acids in length. The family is found in association with pfam10077.	0
NC_011773.1\|WP_000279255.1\|1103078_1105445_+\|endonuclease	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	2.9483e-72
NC_011773.1\|WP_000103718.1\|1112468_1113482_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.15283e-113
NC_011773.1\|WP_000784658.1\|1113829_1114564_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	6.32075e-86

>NC_011773.1|WP_000963375.1|1107110_1107683_+|TetR/AcrR-family-transcriptional-regulator
MAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLKIAIDKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLKGLSN
>NC_011773.1|WP_000984159.1|1105945_1106785_-|hypothetical-protein
MMRALRLNIKQAFCNRVSLIIMFSGFVLICIYHYYYVIRYLGDAASGPISTDIKWIGFRDNEMDVYLLLMPVIASFPFSTSYNSDKSDGFKPFVSKGISLFPYSITKYIVTFFCGGFLYTFPFILSLLFCKLTIPDGTPTIGSGIINEDGMFANLYFDAPLTYITVYIGINFLFAGLMALLGLAASAWSQKDYMAILFPFAVNSIPYVLLNTIFPTIGGAPIHLYDPKQPLQGMSPYILMIQCAFFFFVSLLMYIRGVKRDRKKYRRRLQKRDRCRKAF
>NC_011773.1|WP_003170543.1|1105595_1105949_+|hypothetical-protein
MQAQLNGKLMNQLAIFFSTIVMLQFIADVTGFTQNLDITYNLIHTAASYITFSLAVIFTLIGARRELSKYAIISLCLVVGIKAKGSLFYGDWLARRKRIVNKPLISKIVRKLEVYYT
>NC_011773.1|WP_000279255.1|1103078_1105445_+|endonuclease
MAVKKLLSVFLSFILLLSFTGTLVQAEETTSMSVEKAIQVFKQQGKTKGTVEGYIVGYTQSPSKYTKDPAKFDDTNVAIADSPNETNPDKIMPVQLPKGDVRAAVNVKDHPENIGKKVSLTGTLELYFSSPGLKSVTAHKFQGEEQNRVSDVVASPNGGEVAKGTAVTLTTNTEGATIYYTLDGSNPTNKSVRYNGQIIVNENSVVKAIAEKEGLTSSAISTFSFVIVNNEPVRIHDIQGKSHLSPYNGKKVYNVEGVVTALDKNGFYIEDNQPDNDPATSEGMYVYKKDANVAVGDLVQVDGVVEEYVGPGYAERFETDLTTTEIKASRVAVIAKDQPLPAPIVLGETGVKIPDQIIDNDAFGLFDPNEDAIDFYESVEGMRVTMPTPKIIAPQKNGNLYVTVKNGGNKVVTKYGTPVLDENQLNPERLSVKVPRDYVAKVGDTFTGDITGVVGYDYGSFRIAPITELPSVVDGGFKQIGANIQPRLDKLTVATYNIENFSANKKETTDEKVKALAYSIKYNLKMPDIIGVEEMQDNNGTVNDGTTDASLSAKRIIDAVLEIRGPKYEYVEIAPNNNLDGGAPGANIRVGFFYNPSRVKLATVPKLLDKNVVRIGDENPLFESTRKPLAAEFTFQGQNLVVVANHLNSKIGDATPFGKVQPLVLKSEEKRVQLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTILKNMLNTVPKENRYTYIHEGNAQVLDHILVTNNIAPHTIVDPVHLNTNIMKEHGRVSDHDPVLVQIDLKKAS
>NC_011773.1|WP_000453716.1|1101485_1102838_-|DUF4026-domain-containing-protein
MEVQTETYRAAMNGTLERHFSDMIAVIPTRITIEQLKQRLENIATKVDELKIVYSDETSLIVELHMGNKVIPYELHIDETDDPEEYKLYNRQDSTIVDRTFEDAAYGTEIFTRTLFVGDVLDCFFQQLQFLWNLAPDLLFVIDSSAAMKVISRSYIEYHVENELLPDIPDLYVIHSVYEDDKEGEPTQYWFHTHGLLRAGVTEIELIIPNRISSYYGIGDLFQTFANNAVENGQVPMNEPIVIAHSQQGSIHTVAVPWEKGLSYIGHKTSMDQLSSIEDEEVKLQPINAQNTFLGGMDDRDEYHQSPSVLLFKFDTSEEYIESFFKEHEEATGLMFYKTNSETARMAYNAKNTFGYFSNIFQIEQSNEEFRFLAKFGVSYEEGKSEHMWFEMQHITEEFIQGILINEPYFIEDMSEGNSYHLDFDDLTEWVIYAGDAVIKPNNLYMFIGE
>NC_011773.1|WP_001228084.1|1100024_1101446_+|protoporphyrinogen-oxidase
MRKKVVIIGGGITGLTTMYHLQKDIRDKNLPIDTLLIEASGKLGGKIQTVRKDGFTIERGPDSFLARKESAARLVKELGLGDELVNNQAGQSFILVNNRLHKMPSGSMMGIPTQITPFLFSGLFSPIGKLRAGFDLLMPRSKPVSDQSLGHFFRRRLGNEVVENLIEPLLSGIYAGDIDEMSLMSTFPQMYQIEQKHRSISLGMRTLAPKAEKAEPKKGIFQTVKTGLESIVESLELKMHEGMIIKGTRIEKVAKQGDGYAITLSNGKEIEADAVVVASSHKVLPSMFAQYKQFRFFRNIPSTSVANVAMAFPKSAIQRDIDGTGFVVSRNSDYTITACTWTHKKWPHTTPEGKTLLRCYVGRPGDEAVVEQTEEELVQLVLEDLRKTMDITEDPEFTVVSRWKEAMPQYTVGHNERMKKLTTFMEKELPGIYLAGSSYAGSGLPDCIDQGEKAAKRVLSHLEKVMNTELIAQ
>NC_011773.1|WP_000726793.1|1099069_1100005_+|ferrochelatase
MKKKIGLLVMAYGTPYKEEDIERYYTHIRRGRKPSPEMLEDLTERYRAIGGISPLATITLEQAKKLEKRLNEVQDEVEYHMYLGLKHIEPFIEDAVKEMHNDGIQDAIALVLAPHYSTFSVKSYVGRAQEEAEKLGNLTIHGIDSWYKEPKFIQYWVDAVKSIYSGMSDAEREKAVLIVSAHSLPEKIIAMGDPYPDQLNETADYIARGAEVANYAVGWQSAGNTPDPWIGPDVQDLTRELNEKYGYTSFVYAPVGFVAEHLEVLYDNDFECKVVTDEIGAKYYRPEMPNASDAFIDCLTDVVVKKKESVM
>NC_011773.1|WP_000252615.1|1098008_1099055_+|uroporphyrinogen-decarboxylase
MVRTINETFLKACRGERTDYVPAWYMRQAGRSQPEYRKIKEKYSLFEITHNPELCAYVTKLPVDQYNVDAAILYKDIMSPLPAIGVDVEIKSGIGPVIDNPIRSLQDVEKLGEINPEDDVPYILDTIRLLTTEMLDVPLIGFSGAPFTLASYMIEGGPSRNYHNTKAFMYAEPKAWFALMDKLADMVITYLKAQINAGAKAVQIFDSWVGTVNVADYRVFIKPAMERIFAEVRTMGVPMIMHGVGAPHLVNEWHDLPLDVVGLDWRLPIEEARARGVHKAVQGNMDPSFLLAPWSVIEEHVKGILDQGMKQPGYIFNLGHGVFPEVNPDTLKRLTTFIHEYSKGQLAK
>NC_011773.1|WP_000756259.1|1095711_1097829_+|PBP1A-family-penicillin-binding-protein
MKKVKWTLLGGLATLVLAIVLYKLIVLAGGYMMDEKQLVFHSSSRIVDQKGKEITKLYVENRDIVPIEQIPKYVQQSFIAVEDSRFYEHQGIDYPSIFRALYKDTLAGEKVEGGSTITQQLAKNVFLTREKTFTRKLKEVAISLQLEQKYTKQQILEMYMNHIYFGHGAYGIQAAAKLYFNKNVEDLTVEEGAMLAGLPKSPNGYSPYFSPEKSKERRDLVLSLMHKQGYLTAEESVRYQGKTIALYKNLDENELAYMPYIDMVIDEAARLYGLSHQEVLRGGYTFVVPMDEKIQKVAYNQFQDARNFPGKEEGAQGAFLLMDNRTGGIKAAIGGRKYVPRGFNRVFAKRQPGSVLKPLIVYAPALETKKYNPYSLLTNERYSFEGYEPRNYNREYSKEITMYDAILESANVPAVSLLNELGVEEGKQYLEKGNVHIADAGLSTALGGLKNGVSTFDLVKMYRAFLANGDIIEPHVIDKVLNRHGAVIGESPKVETKIFSKQTAWYMTKMLEGVVKEGTAKAGVYSGALAGKTGTTSLPNDDNGARDMWFVGYTPNLVGAVWIGYDRIDKEHKLQGESASATKLFKKILTKANVEQKEQFRKPEGVETIGAPIRLRKIEDVKMKLAFSPFGLFKAKLSWTPLPDERIMYRIYRVENGIHTHVGTVNGAGEYEEKFVNIFSKPSFYVVPYNTQTNREGEKSKVAKP
>NC_011773.1|WP_000644073.1|1095086_1095584_-|antibiotic-biosynthesis-monooxygenase
MKAIISYETPLEQAHFTAKNNEKDMFYKENTEESVEGSLKYDVLDAVGEFKGQPGYIVCNNISVTDEGRPVFENRFKNRAGLIENEPGFQAIRVLRPLSNDTYVILTMWETEQNFKDWTESRSFENAHKKRPAQAEGQAPAHPHAEQQKSIFSRPSFVTTFDVLV
>NC_011773.1|WP_002157388.1|1110650_1110866_+|hypothetical-protein
MMKGNLTYYFILNPLIIFLVYALSPILFHKEKYINMKDALGILVVYYVLISGYYLMDVVSERMKKDSKDKQ
>NC_011773.1|WP_000140276.1|1110902_1111208_+|DUF2087-domain-containing-protein
MTESEMKFRDATIRNFFDKEDRLKSIPGQKKKKLVLLEHLISKLNADNQYTEKEMNTFIKQYHDDFCTIRREFIVHGFMDREANMYHINGREVWTKWEELK
>NC_011773.1|WP_001068231.1|1111234_1111588_-|PlcR-regulated-protein-PRP2
MNPILTTAKQLLHKEETILSTLNCSLTGYMITYNVPYPGMLLTTNRRLLFFSQYKNTLIAEFDYEKILSIETKRRIFDKKIIFYYEDEYITLGYITSLNIEEFIDLLRRKCKISTNS
>NC_011773.1|WP_000620029.1|1111721_1112231_+|GNAT-family-N-acetyltransferase
MIRLAKETDAEAIMDIRKEIILSKTTTKFFIVSPKKLPNDTNAEREKIRKSNEKGNLYIVYEVDNKVVGFLLFNRYELDRLRHAGTMGMGIKEAYCNQGIGTKLIEFLIRWAKEKKGLEKICLGVVSVNDRAIKVYKRMGFVEEGRQRKQIKYEDGSYGDDVLMGFYID
>NC_011773.1|WP_000103718.1|1112468_1113482_+|LacI-family-DNA-binding-transcriptional-regulator
MSTIEDVAKLAGLSRTTVSRVINNHPYVSDEKKKRVQLAMKHLGFVPNSAARRLRKQKTETIAVLVPRITNPFFSRFIEAIEIAASEHKYKLIICQTRYLPEKEMEYLQLLSTKQVDGIILCSLENPWEDVEPYLQHGPIVLCNEYIEEANIPTVKFDHAQGAYIAAKHVLEQGYRNLIFCRGNETKVVSQQRKMGFLRAITEKSRQVEAIDFLENAFSWEDGKRIFHEVLKDKKNPTAILAGGDEVAAGIISEAKRHDWSIPDDLAVIGFDNQILSQITEPGITTIEQPIDEMARKVVDLMMDKIHTKNYRKKELYEFELELLVKGSTMKDTMLLA
>NC_011773.1|WP_000567010.1|1113521_1113650_-|YhfH-family-protein
MIDQPMEFFRNLPTKTCAHCGKEIDEQHEAYHNKCDDCVHEE
>NC_011773.1|WP_000784658.1|1113829_1114564_+|MBL-fold-metallo-hydrolase
MKMTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSLTHEPHTKGIPYNSEETLQIGPFSISFLKTVHPVTCFAMRITVGNDIVVYSADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDANVKELLLTHLPHTGNPADLVTEAKQIFSGHITLAHSGYVWNS
>NC_011773.1|WP_000897260.1|1114573_1115563_+|lipoate--protein-ligase
MLFIDNKGITDPRINLAIEEYCVKNLDINETYLLFYINEPSIIIGKNQNTVEEINADYVKEKGIHVVRRLSGGGAVYHDLGNLNFSFITKDDGDSFSNFKKFTEPVTKALGKLGVNAELSGRNDILAEGRKISGNAQFSTKGRMFSHGTLLFDSEIDHVVSALKVKMDKIQSKGIKSIRSRVANITEFLNEEMTTEEFRQLLLETIFEGETEIPTYELTEEDWKEIHKLSEERYRNWDWNYGKSPKFNLQHSHRFPVGQVDVRLEVKKGTVTECKIYGDFFGSLDVHDIEERLTGVQFDKDAFTTALEGVDIARYFGNITTEDFLHLFF
>NC_011773.1|WP_000832636.1|1115817_1116285_+|hypothetical-protein
MKRVMYVVLLLSFVIRIAACNDETSSSRTILSIGKPAKDNVIYFTHTDNKRKIQEIQDMFQNKKWKRNETFSTVNKTPDVVFSIDEDNAGLPALYVTVYFYEDGADAINLFGEHTTLNKEELTKLREKMSAYYPKMIFGLVSYIACKQNSLILSK
>NC_011773.1|WP_001055188.1|1116407_1117940_+|fatty-acid--CoA-ligase-family-protein
MNLVQSLAETAKKKGDKPAYIFMDQSVSYDQLNKMVTRFSSNLAEMGIGKGDNVALVVGNSPHFLVGLYGTMRAGATVIPVNPIYTADEMHYILQNGDVKTIIVLDVLLPVIQSLTTRLPSLENIIICETSSDFNHTETEKMKTFTRMIGAGDLTYEGPELDEEDVAVILYTSGTTGKPKGAMLTHKNLYSNASDVASYLQYTADDRVVAALPMFHVFCLTVAVNAPIVNGATILMLPKFSPKEVFRICRTYEPTIFAGVPTMYNYLYLFEEASAEDVKTLRLCISGGASMPVALLQNFEKRFDVIVSEGYGLSEASPVTCFNPLDRPRKPGSIGTNIWHVENKIVNELGEEVPVGAVGELIVRGPNVMKGYYNAPEDTAATLKDGWLYTGDLAKMDEEGYFYIVDRKKDIVLVGGYNVYPREVEEVLYMHESVAEVVVIGVPDENLGEAVRAYVVLKQTNVTEEELMHYCTLHLAKYKVPKSIEFLTELPKNTTGKLLRRALREKAMQV

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Crispr_ID: NC_011773_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011773_2

1228246-1228354

Orphan

Consensus_repeat	Method
TGTATGATTACCTTCCGCATGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011773_2

>merge|NC_011773|2|1228246-1228354|CRISPRCasFinder
TGTATGATTACCTTCCGCATGAGAAGAGAATCCGTTAGCGATAGTCGCGGTTCCTTCTGCATGTGCTGCTTCGCCTAAAGCGATTGTATGTTTACCTTCCGCATGAGAA

>NC_011773|2|2|1228246-1228354|CRISPRCasFinder
TGTATGATTACCTTCCGCATGAGAA	GAGAATCCGTTAGCGATAGTCGCGGTTCCTTCTGCATGTGCTGCTTCGCCTAAAGCGAT
TGTATGTTTACCTTCCGCATGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011773.1\|WP_000932921.1\|1235102_1236203_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_011773.1\|WP_001180009.1\|1224783_1225155_+\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000673188.1\|1225842_1226640_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|235317
NC_011773.1\|WP_000872722.1\|1229126_1229867_-\|bis(5'-nucleosyl)-tetraphosphatase-PrpE	unknown	unknown	gnl\|CDD\|184187
NC_011773.1\|WP_000003393.1\|1220237_1222064_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NC_011773.1\|WP_000043381.1\|1223479_1223878_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381281
NC_011773.1\|WP_000191105.1\|1224058_1224637_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143627
NC_011773.1\|WP_000651510.1\|1237739_1238420_+\|streptomycin-biosynthesis-protein-StrF	unknown	unknown	gnl\|CDD\|379345
NC_011773.1\|WP_000654694.1\|1229941_1231102_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NC_011773.1\|WP_000612273.1\|1218942_1220187_+\|competence-protein	unknown	unknown	gnl\|CDD\|226875
NC_011773.1\|WP_000428855.1\|1233081_1233927_-\|O-methyltransferase	unknown	unknown	gnl\|CDD\|377550
NC_011773.1\|WP_001004743.1\|1232186_1232945_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_011773.1\|WP_001087866.1\|1236354_1237044_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NC_011773.1\|WP_001081482.1\|1225185_1225824_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NC_011773.1\|WP_000069725.1\|1234049_1234937_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375999
NC_011773.1\|WP_000360640.1\|1222586_1223480_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372699
NC_011773.1\|WP_001079103.1\|1226655_1227549_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_011773.1\|WP_001271203.1\|1237040_1237727_+\|streptomycin-biosynthesis-protein-StrF	unknown	unknown	gnl\|CDD\|379345
NC_011773.1\|WP_000799201.1\|1217316_1218861_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NC_011773.1\|WP_000427734.1\|1231244_1232180_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154

Protein	Function_ID	Function_description	E-value
NC_011773.1\|WP_000932921.1\|1235102_1236203_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	3.01776e-55
NC_011773.1\|WP_000673188.1\|1225842_1226640_+\|NAD-kinase	gnl\|CDD\|235317	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	0
NC_011773.1\|WP_000872722.1\|1229126_1229867_-\|bis(5'-nucleosyl)-tetraphosphatase-PrpE	gnl\|CDD\|184187	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional.	0
NC_011773.1\|WP_000003393.1\|1220237_1222064_+\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NC_011773.1\|WP_000043381.1\|1223479_1223878_-\|hypothetical-protein	gnl\|CDD\|381281	cd14772, TrHb2_Bs-trHb-like_O, Truncated hemoglobins, group 2 (O); Bacillus subtilis TrHb like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include monomeric Bacillus subtilis trHb (Bs-trHb), which exhibits an extremely high oxygen affinity, and a dimeric TrHb2 from the thermophilic aerobic spore forming bacterium Geobacillus stearothermophilus(Gs-trHb).	1.17037e-69
NC_011773.1\|WP_000191105.1\|1224058_1224637_-\|CYTH-domain-containing-protein	gnl\|CDD\|143627	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup are of bacterial origin and have not been characterized.	1.94434e-83
NC_011773.1\|WP_000651510.1\|1237739_1238420_+\|streptomycin-biosynthesis-protein-StrF	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	6.29242e-108
NC_011773.1\|WP_000654694.1\|1229941_1231102_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.52707e-99
NC_011773.1\|WP_000612273.1\|1218942_1220187_+\|competence-protein	gnl\|CDD\|226875	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only].	8.92237e-59
NC_011773.1\|WP_000428855.1\|1233081_1233927_-\|O-methyltransferase	gnl\|CDD\|377550	pfam05711, TylF, Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex. The structure of one representative sequence from this family, NovP, shows it to be an S-adenosyl-l-methionine-dependent O-methyltransferase that catalyzes the penultimate step in the biosynthesis of the aminocoumarin antibiotic novobiocin. Specifically, it methylates at 4-OH of the noviose moiety, and the resultant methoxy group is important for the potency of the mature antibiotic. It is likely that the key structural features of NovP are common to the rest of the family and include: a helical 'lid' region that gates access to the co-substrate binding pocket and an active centre that contains a 3-Asp putative metal binding site. A further conserved Asp probably acts as the general base that initiates the reaction by de-protonating the 4-OH group of the noviose unit.	1.13671e-149
NC_011773.1\|WP_001004743.1\|1232186_1232945_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.00939e-20
NC_011773.1\|WP_001087866.1\|1236354_1237044_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.33577e-17
NC_011773.1\|WP_001081482.1\|1225185_1225824_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	1.66713e-95
NC_011773.1\|WP_000069725.1\|1234049_1234937_-\|hypothetical-protein	gnl\|CDD\|375999	pfam18573, BclA_C, BclA C-terminal domain. This is the C-terminal domain of BclA (Bacillus collagen-like protein of anthracis) which is expressed on spores of Bacillus species. Trimers of the C-terminal domain (CTD) form the tips of the spore's hair-like nap and are the immunodominant target of vertebrate antibodies and drive trimerization. Structure analysis indicate the C-terminal region of the peptide folding into an all-beta structure with a jelly-fold topology, similar to the first human complement C1q, a member of the tumor necrosis factor (TNF)-like family. The C-terminal globular domain has been shown to be located on the exterior of the exosporium, and therefore is critical in determining the immunogenicity of the spore in a mammalian host.	3.30703e-18
NC_011773.1\|WP_000360640.1\|1222586_1223480_-\|DsbA-family-protein	gnl\|CDD\|372699	pfam13743, Thioredoxin_5, Thioredoxin.	6.08384e-93
NC_011773.1\|WP_001079103.1\|1226655_1227549_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	7.05011e-102
NC_011773.1\|WP_001271203.1\|1237040_1237727_+\|streptomycin-biosynthesis-protein-StrF	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	4.87129e-112
NC_011773.1\|WP_000799201.1\|1217316_1218861_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	0
NC_011773.1\|WP_000427734.1\|1231244_1232180_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.94506e-22

>NC_011773.1|WP_001079103.1|1226655_1227549_+|RluA-family-pseudouridine-synthase
MNRFTLKWDIESAEEGTLVREFLKTKGISKAALTDIKFHGGAIEVNGQHASVRHQLQAGEEIRVFFPVEERSEGMIAEDIPLCIVYEDDAVLVINKEANMSTIPSREHPSGSVANALLSHYDKQYLASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEALVHGEMIEQEGTIDAPIGRKSDSIIERTVCEEGQRAITHFRVIASANHKTHVSLELDTGRTHQIRVHMAHIGHPLLGDTLYGGKRDEVKRQALHSTSLTFYHPILEKEMSFTAMIPSDMQEVLRQT
>NC_011773.1|WP_000673188.1|1225842_1226640_+|NAD-kinase
MKFTIMSKGDQSSDTLASTMKEYLLDFGFIMDEKEPDIVISVGGDGTLLYAFHRYYDRLAETAFVGVHTGHLGFYADWLPTEVEKLVIAIAKTPFQVVEYPLLEVIIRYVNGSKESQYLAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGSTAYNKALGGAIIHPSIEAIQIAEMASINNRVFRTVGSPLVLPKHHTCVLKPAAGMNLQITVDHLTMVHQDVKSIQYRVANEKVRFVRFRPFPFWKRVRDSFVADK
>NC_011773.1|WP_001081482.1|1225185_1225824_+|GTP-pyrophosphokinase-family-protein
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
>NC_011773.1|WP_001180009.1|1224783_1225155_+|hypothetical-protein
MQNKIQVKSVEKRENALIFCAENSEIEVKGLSARNHVLVDSDNLSFLYILENESSFIYVSIPHTCWEAMHEAMNNDVVMFVRVNDIEMELEGLKEEVEYLVENIEGNANYGEELVTAVEKVFL
>NC_011773.1|WP_000191105.1|1224058_1224637_-|CYTH-domain-containing-protein
MTQEIEIEFKNIVTEEEFHALCKSFSIEVFTKQVNHYFETPNFSLKEAGSALRIRHKGETYTLTLKQPAEVGLLETHQVVTENEAKMMMETNVIISGAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRHTNNKVKRFFLAKQNKAR
>NC_011773.1|WP_000043381.1|1223479_1223878_-|hypothetical-protein
MSKQPMTPFEAIGGEQCIAILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFEITPKRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPNETGEI
>NC_011773.1|WP_000360640.1|1222586_1223480_-|DsbA-family-protein
MDKQEAKHINMPSPSACEHKSVEAYLFIDPLCKDCWEIEPFIIKLWLEYGKYFSIRHIVTGKVDGTNASSHKWNKPANIRFVWEKTTSLHGFSCDGKVHMQEASSTPYLVSMAIKAAELQGRKAGSKFLRKLQEYIFLENVSNPDCELLLACAKDSDIDVEEFKKDLYSASAKKAFQCDLKFTNEMHITEIPSLVFFHANSDEEGIKIAGTYSYDVYVQLLKELVKCEIEPEPLPSLEVLLEATQFISSKEVAFIYDCSKQEIERELKKLQLKRKVQMIDVKCERYWKWIAKEEDLV
>NC_011773.1|WP_000003393.1|1220237_1222064_+|oligoendopeptidase-F
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDTEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLYTYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEAEEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFASTLSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKMNVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHSVHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQEGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEFLKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK
>NC_011773.1|WP_000612273.1|1218942_1220187_+|competence-protein
MIPIFIAKRENGEKIHLLDHHDEELLHHMRKRESFFCIACGKEVLMRLGKQKRWHFAHKKVDSCLAFYEAESTYHMYGKELLYRWFKRQNVHVEIEHYLPEIQQRPDIFIERAGRKIAIEYQCANLSIEQLCKRTYSYWQAGIQVIWIIGGNQLKKHSAYWMKFSSIMAFSLQSYPQPLLIFFCSKQKSFMKCTFITSFSTSVAFSHIIYLPIETTTFEMLFSPVPFQREVLNREWKRRKDYFRQNALPILNYNHKSLLRLLYQCKCNPANFPSEIGVPLPSSFAFQTNSFIWQAFLYMKCIGELAVGDCISLKYVCSYIKKYTKRRMLPYFSQHIWKVAVTEYMTFLCYAGVLYKVGMYTYRKIRDAVPLKTGGEIMKHDEICLAHALSLFEAKFNMRGGKGDIIKTDREGIT
>NC_011773.1|WP_000799201.1|1217316_1218861_+|cardiolipin-synthase
MKNTLKLIFFVLLLFALFVSLRMFIDVAFYSDVIGIKDVSILGIISILFTVSAFLIGCVIFLENRHPSKTLTWLIVLGIFPVFGFFAYLLFGQNFRRKRMFQKKALLDEQAFLQYKGHEDYEERILRNHKHQELLFRLADRLGALNISFQTETRTLTNGDETFQAILDGLKRAKHHIHMEYYIVRDDKLGTEIKDILIQKSKEGVVVRFLFDAVGSFKLSKSYIEELNDAGVEMIPFFPVRFPILNDKINYRNHRKIVIIDGNEGFVGGLNIGDEYLGKDKYFGFWRDTHLYLRGEAVQSLQLIFLQDWFYMTGEAVLAPEYLQAKAVEGEHWGGVQLVAGGPDNKWETIKHLYFAMIASARKSIWIATPYFIPDDDILSALKVAALAGIDVRLLMPSKPDKRTVFYASRSYFPELLDAGVKIYEYEKGFLHSKVVIVDSDLASIGTANMDMRSFHLNFEVNAFLYDTDSIRKLVQDFKDDLEESSEIHVDRFHKRRLHRRIVESTYRLLSPLL
>NC_011773.1|WP_000872722.1|1229126_1229867_-|bis(5'-nucleosyl)-tetraphosphatase-PrpE
MKYDIIGDIHGCLQEFQNLTEKLGYNWSSGLPVHPDQRKLAFVGDITDRGPHSLRMIEIVWELVIHKKVAYYAPGNHCNKLYRFFLGRNVTVAHGLETTVAEYEALPSHKQNMIKEKFITLYEQSPLYHVLDEKRLLVCHAGIRQDYIGRQDKKVQTFVLYGDITGEKHADGSPVRRDWAKEYKGTTWIVYGHTPVKEPRFVNHTVNIDTGAVFGGRLTALRYPEMETVSVPSSLPFVPEKFRPIS
>NC_011773.1|WP_000654694.1|1229941_1231102_-|rod-shape-determining-protein-RodA
MKDPNSQYQIDYVLLCILFAIGTVSCFAIASAQASLPPFLQNVNFVLKQIQWYFIGFIAIGVIMIIDFDRYQKIAWYLYSFALVLLIGLELQVPGAITIKGATAWYRLPGIGNFQPSEIMKLFLIIVTGRIIANHNEKYFYRTIHDDFLLLGKICATSLPPLLLIAKEPDLGNTMVISAMLAAMILVSGIRWRFIFGLVSGIFVTAVTLTYIFFTHTKFFKTHILQEYQLNRFYGWLAPYKYDAQGYQLRQAFLATGSGEMQGKGWENGQVYFPEPHTDFIFTNVAEQFGFLGASVIIAIFFLLIFRMIHIAIESNDPFGSYICAGTIGMFTFQVFQNIGMTIGLLPITGITLPLMSYGGSSLLTYMIAIGFVLNVRSRTKIFMFN
>NC_011773.1|WP_000427734.1|1231244_1232180_-|glycosyltransferase-family-2-protein
MENIKNVPLVSILIPTYNRPHYFKIALESALAQTYSNIEIIVGDDSTNNETEKLIYRDYLHKHKHITYIRNPSTLGQFHNALMLLEQSNGEYINFLMDDDIFYNNKIEKMMFYFQKDLDQNLALITSYRTWINDDGDIIEQHPSMKKLYDEDTLLNGKDFGNRMLILGQNIIGEPTTVLFRKRLLTEPFGTLNGRNYNCSVDMASWISLLSKGDAIYITEPLSSFRLHTGQQVHHKYLEGCEDFSHLVLHSKKYGFLQDIDYYKTSLLKACEWYKNATTFYQLYPELIPTTDTHTRLSHCLNIVTKELHAI
>NC_011773.1|WP_001004743.1|1232186_1232945_-|class-I-SAM-dependent-methyltransferase
MNENEKKITLIPPPELVQYVGGHFEEVGKEFMQYFIEIGNLKSNETVLDVGCGIGRMAVPLMNYLSDDGTYYGFDLFNKGITWCKNNISTRRNNFHFEHVDIYNQFYNPDGKEDASQYKFPYEDESFDFIFLTSVFTHLLPKELEHYVREIARVLKKDGRCFITFFLINPESSYYLNAGLSPLGFYHQIDNCYVLNKDIPNFAVAYPEEDIRTLLNKYGLEMQTPPHYGSWCGRTEHTSYQDIILTQKISER
>NC_011773.1|WP_000428855.1|1233081_1233927_-|O-methyltransferase
MENKSAVQLYLELLKKTILFEIWLEYEPYLPASLHISKELSYEPVTVPLPLFLKQYVENHNLKIVNPNVSNNERQGGKDWPRAAHSMVGRKRMNQLQEAMETVVKENIEGDFIETGVWRGGSCIFMNGFLQANNITDRTVWVADSFEGLPAPNLEQYPKDYGDYLHTFDYLRVSLETVQENFRKYDLLNDQVKFLKGWFKDTLPSAPIEKIAIARLDGDMYESTMDSLVNLYDKVSIGGFIIIDDYGLITCAEAVTDFRSERNIKTPMTQIDDFGIFWRKE
>NC_011773.1|WP_000069725.1|1234049_1234937_-|hypothetical-protein
MSNNNYSNGLNPDESLSASAFDPNLVGPTLPPIPPFTLPTGPTGPTGPTGPTGPTVPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGDTGTTGPTGPTGDTGTTGPTGPTGDTGTTGPTGPTGDTGATGLTGPTGDTGATGPTGPTGATGLTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSASIIIEKVA
>NC_011773.1|WP_000932921.1|1235102_1236203_+|glycosyltransferase-family-2-protein
MLNKQGITISLCMIVRDEEKTIARCLDSVEKIVDEIIVVDTGSIDRTKEIVEKYTSNIYDFQWIDDFAAARNFSFSKATQEYILWLDADDVLLEDAQEALKLLKRELDPKIDAVSMPYHLAMDSNGKPLYCTKRNRLVKREKQFQWFGKVHEYLAISGETFSSNVAITHKKEKKVTNRNLKIFQDAVAAGEELSPRDLFYYANECMDNQKYDDAVLLYETFLNQDEGWYEEKIYACGKLGDCYAKLGLWEKAVESCVKSFRYAIPRGENCTRIGYIYMEQQKYNEAIFWFKLATEVPMATESPFHSPASYTWLPYLQMCICYSKLGEQDKAYYYNELAASYVPNNAAIEYNRKYFRSIFDQQKKSL
>NC_011773.1|WP_001087866.1|1236354_1237044_+|class-I-SAM-dependent-methyltransferase
MNSPKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMEMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKHNGVILASIPNVAHISVLAPLLAGNWSYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYIDHKMYEPLIEELYGVCKKYRLGSGFMAETVVFQYIIEAEKSSL
>NC_011773.1|WP_001271203.1|1237040_1237727_+|streptomycin-biosynthesis-protein-StrF
MSAAEKTILFVTCINDSKMYAQCVRHILRLAVPPGYVVQFMPIRNAKSMTSGYNQAISHPAKYKVYIHQDVFIMNVAFLHGLLQLFNEHEHLGMIGMIGAQYVPPNGVWNEGKGVVGKVIGYMNDLFYMASQEQPYHESKTFMPVECIDGLLMATQYDIPWREDLFDGFDYYDVSQSFEFRKAGYTVGVPVQRDAWCIHYHIDVNMTNYEKYRKIFVEHYMSDVNQDE
>NC_011773.1|WP_000651510.1|1237739_1238420_+|streptomycin-biosynthesis-protein-StrF
MKDHTILVVVCINNEELFEQCERQIRNLFVPPGYVVQIFPIRDAKSMASAYNRALSYPAKYKVYIHQDTFLINREMFYTLISLFKDNEKLGLIGVAGAQFLPSNGIWWEGKNLVGKVIEYRRQNYQLLNLDQLFYGNQSFMSVQAIDGLLMATQYDIPWREDLFQGFHFYDVSQSLEFQKAGYLIGIPNQANLWCIHYNGDEFDADTYEKYRKVFVEHYKDILSPS

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Crispr_ID: NC_011773_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011773_3

2785644-2785818

Orphan

Consensus_repeat	Method
ATTTCGGAATGAATGTTCATTCCTCTC	PILER-CR

2 spacers

The CRISPR arrays of NC_011773_3

>merge|NC_011773|3|2785644-2785818|PILER-CR
ATTTTGAAAACACCTTTTCGGAATGAACGTTCATTCCTCTCGTTCTATTAATTTACTTTTTAGCTCTATTAAACTATGGATTTTGGAATGAATATTCATTCCTTTAATTGTACAGATTGATCATCTCCTACTTTTCTTTTTCACACCCTCATCGGAATGAATGTTCATTCCTGTC

>NC_011773|3|1|2785644-2785818|PILER-CR
ATTTTGAAAACACCTTTTCGGAATGAACGTTCATTCCTCTC	GTTCTATTAATTTACTTTTTAGCTCTATTAAACTATGG
ATTTTGGAATGAATATTCATTCCTTTAATTGTACAGATTGA	TCATCTCCTACTTTTCTTTTTCACACCCTCATCGGAATGAATGTTCA
TTCCTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011773.1\|WP_001273582.1\|2793091_2794168_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|183614
NC_011773.1\|WP_000664621.1\|2788116_2789406_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NC_011773.1\|WP_000551418.1\|2774294_2775122_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
NC_011773.1\|WP_001102427.1\|2771488_2772034_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_011773.1\|WP_000346934.1\|2776054_2776726_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NC_011773.1\|WP_002036551.1\|2794999_2798512_-\|DUF4020-domain-containing-protein	unknown	unknown	gnl\|CDD\|238697
NC_011773.1\|WP_000997708.1\|2798662_2799100_+\|YndM-family-protein	unknown	unknown	gnl\|CDD\|371204
NC_011773.1\|WP_001093212.1\|2781278_2782127_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180682
NC_011773.1\|WP_000709765.1\|2799248_2799779_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NC_011773.1\|WP_001106982.1\|2773816_2774077_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NC_011773.1\|WP_000646308.1\|2772049_2772751_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_011773.1\|WP_001100949.1\|2786671_2787829_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226925
NC_011773.1\|WP_001269434.1\|2791634_2792807_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|171518
NC_011773.1\|WP_000808762.1\|2776785_2778759_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NC_011773.1\|WP_001107293.1\|2785835_2786402_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|292911
NC_011773.1\|WP_000633862.1\|2779275_2780901_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NC_011773.1\|WP_001228119.1\|2789422_2790523_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NC_011773.1\|WP_000923442.1\|2772767_2773451_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|132880
NC_011773.1\|WP_001197259.1\|2790515_2791616_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|134568
NC_011773.1\|WP_000637713.1\|2775281_2775944_+\|DUF3841-domain-containing-protein	unknown	unknown	gnl\|CDD\|378997

Protein	Function_ID	Function_description	E-value
NC_011773.1\|WP_001273582.1\|2793091_2794168_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|183614	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed.	0
NC_011773.1\|WP_000664621.1\|2788116_2789406_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_011773.1\|WP_000551418.1\|2774294_2775122_+\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	2.21079e-85
NC_011773.1\|WP_001102427.1\|2771488_2772034_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	7.9863e-23
NC_011773.1\|WP_000346934.1\|2776054_2776726_+\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	8.67512e-74
NC_011773.1\|WP_002036551.1\|2794999_2798512_-\|DUF4020-domain-containing-protein	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	5.8202e-56
NC_011773.1\|WP_000997708.1\|2798662_2799100_+\|YndM-family-protein	gnl\|CDD\|371204	pfam10710, DUF2512, Protein of unknown function (DUF2512). Proteins in this family are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.	3.67802e-44
NC_011773.1\|WP_001093212.1\|2781278_2782127_-\|hypothetical-protein	gnl\|CDD\|180682	PRK06761, PRK06761, hypothetical protein; Provisional.	4.23165e-151
NC_011773.1\|WP_000709765.1\|2799248_2799779_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.19855e-68
NC_011773.1\|WP_001106982.1\|2773816_2774077_-\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0.000648134
NC_011773.1\|WP_000646308.1\|2772049_2772751_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	2.25267e-10
NC_011773.1\|WP_001100949.1\|2786671_2787829_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226925	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only].	4.66704e-71
NC_011773.1\|WP_001269434.1\|2791634_2792807_-\|chorismate-synthase	gnl\|CDD\|171518	PRK12463, PRK12463, chorismate synthase; Reviewed.	0
NC_011773.1\|WP_000808762.1\|2776785_2778759_-\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
NC_011773.1\|WP_001107293.1\|2785835_2786402_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|292911	pfam16295, TetR_C_10, Tetracycline repressor, C-terminal all-alpha domain.	1.12259e-71
NC_011773.1\|WP_000633862.1\|2779275_2780901_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NC_011773.1\|WP_001228119.1\|2789422_2790523_-\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	5.06467e-160
NC_011773.1\|WP_000923442.1\|2772767_2773451_-\|DNA-alkylation-repair-protein	gnl\|CDD\|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	3.93397e-27
NC_011773.1\|WP_001197259.1\|2790515_2791616_-\|histidinol-phosphate-transaminase	gnl\|CDD\|134568	PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated.	0
NC_011773.1\|WP_000637713.1\|2775281_2775944_+\|DUF3841-domain-containing-protein	gnl\|CDD\|378997	pfam12952, DUF3841, Domain of unknown function (DUF3841). This presumed domain is around 190 amino acids in length. As yet no function has been given to any member of the family.	5.01014e-32

>NC_011773.1|WP_001093212.1|2781278_2782127_-|hypothetical-protein
MNTKLIIVEGLPGFGKSTTAQLINDILSQNKIEVELFLEGNLNHPADYDSVSCFNKFEFDRLLSNSGDFKEVLLKRVLKKGSNYLLPYRKIKNEFGDQFSDELFNDISRNDIYELPFDKNVELIADKWQDFAEIALEDDKVYIFECCFIQNPLTIGMIKYGEQKEKIINYVMKVAKIIENLNPMLFYVEQDDLEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNHSGVEGAIKVLEARRNLELEIFDMLKMKKEKINNTKYEIDSYRSMLKDKLTIQMVK
>NC_011773.1|WP_000633862.1|2779275_2780901_-|ATP-binding-cassette-domain-containing-protein
MITVSNVSLRFADRKLFEDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEPSTGDIHITPGERLAVLKQNHFEYEEFPVLETVIMGHTQLYKVMQEKNAIYMKEDFSDEDGMRAAELEGEFAELNGWEAESEAAILLKGLGIGEDLHDKKLSELTGAEKVKVLLAQALFGKPDILLLDEPTNHLDLKAIQWLENFLMNFENTVIVVSHDRHFLNKVCTHMADLDFGKIQLYVGNYDFWYESSQLALKLTQDANKKKEEKVKELQNFIARFSSNASKAKQATSRKKLLDKITLDDIRPSSRRYPFVGFTPEREVGNDLLTVEGLSKTIDGEKVLDNVYFTLNKGDKVAFIGRNDIAMTTLFKILMGEMEPDSGSFKWGVTTSQSYFPRDNSKYFENSDLNLVEWLRQFSPQDESESFLRGFLGRMLFSGEEVKKNVSVLSGGEKVRCMLSKMMLSGANVITLDDPTNHLDLESITALNNGLIAFKGTMLFTSHDHQFVQTIANRIIEVTPNGVIDKEATYDEFLENEELQKQVDAMYKGQ
>NC_011773.1|WP_000808762.1|2776785_2778759_-|LTA-synthase-family-protein
MKQFLLKSKSVLSNHFGFFLFAVILFWLKTYAAYVTEFNLGISNTIQKFLLFFNPLSSAVLFLGLALFAKGKRSYIWLIVINLLLSILLYANVVYYRFFSDFITFPTLTQTNNFGDLGGSIVALLHLYDPLYFLDTIILIVLVATKFANPKPIRVAKYKVSLVFVAGILLFSVNLGLAESDRPELLTRTFDRNYIVKYLGAYNYTIYDGIQSAKASTERALADGDNMTEVRNYLTSTYASPNPEYFGKGKGMNVIYIHLESFQNFLIDYKLNGQEVTPFLNSFTKDANTLYFDNFFHQTGQGKTSDAEFMLENSMFGLPQGSVFTTKSHNTYQSAPAILGQQGYTSAVFHGNYKTFWNRDDIYKSFGFNKFFDASYYDMNEKDVVNYGLKDKPFFNESIPLLETLKQPFYTKFITLSNHFPYPIDKEEATIEPANTGDSSVDTYFQTARYLDESVKGFIDYLKQSGLYDNSIIVMYGDHYGISDNHNAAMSKVMGKEINSFENAQLQRVPLIVRVPGVKGGVQHQYGGEIDVLPTLLHLLGTDTKNYVQFGSDLLSPDHKQVVAFRNGNFVSPTVTALNGKYYDTTTGKPVEFTDEIKQNEQMVQNSLKYSDQVVNGDLLRFYTPEGFTPIDRSKYNYNNRDKNKTKVKTAPEGEAK
>NC_011773.1|WP_000346934.1|2776054_2776726_+|TerC-family-protein
MDFLSAEYLSALLAIIVIDLVLAGDNAIVIGLAARRLPKDQQKKVIIWGTIGAIAIRALATLVVVWLLKIPGLLLIGGVLLIWIAYKLIAEGKDHDIKAEEGFWSAIKTIIIADALMGIDNVLAVAGAAHGNFSLVIIGLLVSIPVVVWGSTLILKWVDRYPIIITIGAAVLAYTAAKMIVDEKWFAAFFESNPFIKWAFIIIIIAGVVFFGKAKQKATDGSI
>NC_011773.1|WP_000637713.1|2775281_2775944_+|DUF3841-domain-containing-protein
MIVYTVQTEEAWKQFKKLGYLEGNKEFIDSDDIYSYDWMVRVAKTKLPHYEGNYPIWVWEANNYPNRNHKAWGRKNSKMVILTLDVPKEWVLWSYFDYWCCAMTDGSTYLHTKNKCTLDEWYIYMDKKYGIIFNFDYLLSHPDWYLDKEDSLEKQGVIGKIPLSFVKKVRRFRAKEDTSIHTIRSDNWDNRKENRIKKMNRKLRKRNEKQKRVQKRLIRN
>NC_011773.1|WP_000551418.1|2774294_2775122_+|polysaccharide-deacetylase
MHNGIRMTTLMKRAMLICAGVLFTYEAALGSAHTALASTEDEAKSVQLVSEIQSSLAPKEAPKQYNGQVRKVAYLTFDDGPGKYTAELLDMLKKENAKATFFLIGSNVKAFPDLVKREDAEGHYVGMHSMTHNYKKLYTEGHYVDEMKEDQGLIAGVLGKSPVLTRPSYGSMPGLNEALRNKVVENGLKVWDWTIDSLDWRYNKMPVDAASAKIVENVINGANKPTEVILMHDIHPQSVKAVPGIIKGLKEKGYELEAYSENEHFPLNFWHDNRM
>NC_011773.1|WP_001106982.1|2773816_2774077_-|hypothetical-protein
MNYKKMLSIFMMSIFTVGLLIGCNPAPKDEKEPDPTEEPSEQRQEEKNEKQDPAKEQNNELNKKDEQEPDPTEEPSEEQKKKKENE
>NC_011773.1|WP_000923442.1|2772767_2773451_-|DNA-alkylation-repair-protein
MLLEEVMQQLEEYGTEQNRKTYKNHGAKEPLFGVSFANLKLLKKKIKKDHDLAISLWETKNMDAMTLATMILDPKKVTTELLNKWVQEVDYYCLMDVLMTAICTSPIAIERMEEWTKSDDEWIGRAGWSLLANIAIKNKTLQDDSFSPYLEEIKENIHNEKNRKREAMNSALIAIGIRNEDLEQTAIEIAREIGKVQVDHGATSCKTPDAESYIKKARERAEKKKMK
>NC_011773.1|WP_000646308.1|2772049_2772751_-|nucleotidyltransferase-domain-containing-protein
MKAMEAAQSIITSHFPDCDVALLGGSVARGEATKTSDLDIVIVDQSLTSCYRESFYSNGWPVEVFVHNFETYKTFFKMDCDRGRPSLPQLVSEGIVLKGENEIVEKLKREASDLLNKGPAKWTDEMMKQKRYFITDTLDDFIGASKREEELFIANLLADLLHEYVLRVNGKWLGNSKWFIRVLRKYDEQYADQFVAAFDHFYTTGEKSKLITFVEKTLEQYGGRMFEGFSIGK
>NC_011773.1|WP_001102427.1|2771488_2772034_-|GNAT-family-N-acetyltransferase
MNVPFVQLRELTLDDVEDRYQWSLDTKVTKHLVVPDQYPPFTLEDTKQWIEACINRKNGYEQRAITAENGIHIGWVDLKNFDKTNKNAELGIAIGNKEYWGKGYGIAALYXMLHVAFFEFELEKVWLRVDEDNLQARKSYEKAGFVCEGLMRNDRLRKGRFIHRYRYSMLREEYQSLISSL
>NC_011773.1|WP_001107293.1|2785835_2786402_-|TetR-family-transcriptional-regulator
MAKNKQEDIFDAAIQLFAERGYDGTTIPMIAEKAKVGAGTIYRYFENKEALVNSLFTKSVLQLSELIKTDFPVNANIREQFSHTYNRLFEFARQNADAFLFTNSHCDSYFLDEHSNEIFEDFMGFFMDLIEDGIEKGFLRPLPPIALIIIVYQPIEKLIKVMETGQLEYTEELVKELEESCWNAIRII
>NC_011773.1|WP_001100949.1|2786671_2787829_-|GNAT-family-N-acetyltransferase
MNVIRLKEDKFREALRLSEYAFQYKVDEDRLQQQITKMKESHEVYGIMEGENLAAKLHLIPFHIYIGKEKFKMGGVAGVATYPEYRRSGYVKELLQHSLQTMKKDGYTISMLHPFAVSFYRKYGWELCANLLVCHMTKSDLVMKKQVNGTVKRFNKESHPEEVEKLYETFAERFSGMLVRNEKWWLQAVYDDLTLAIYYDENQTAAGYMLYKIENYKMTVEEFVPLHNEARNGLWNFICQHDSMIKDLEMTVSENEPLLYTLQEPRVKTEIKPYFMGRIVDVEQFLKQYELNWNNVQQEVILHITDSFAPWNNVSVRLANYEITIIEEPMDKGIKLDINALSTILFGYRRPLELNELELISGSEEEIRAFENVVPVRKPFIYDFF
>NC_011773.1|WP_000664621.1|2788116_2789406_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKERTIQPVNNGLNGNITIPGDKSISHRAVMFGAIAEGTTTIKGFLPGADCLSTISCFKEMGVDIVQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDASIAKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYTSPVASAQVKSAILLAGLRAEGVTAVTEPHISRDHTERMLEAFGVKVTREGKTVKLAGGQKLTATDVQVPGDVSSAAFFLVAGAIIPNSKLVLENVGMNPTRTGIIDVLEKMGATFTVEPINEGASEPAANITIETSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIKDAHELKVKETNRIDTVVAELTKLGARIEATDDGMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCIAEGKTIIEDAEAVGVSYPTFFEELQKLAK
>NC_011773.1|WP_001228119.1|2789422_2790523_-|prephenate-dehydrogenase
MRKKVVLIGTGLIGGSLALAIKKDHDVTITGYDIFQEQVERAKELHVVDEIAVDLQHACEEAHLIVFASPVEETKKLLHKLASFHLREDVIVTDVGSTKGSIMNEAEALFSKEISFIGGHPMAGSHKTGVESAKAHLFENAFYILTPMHHVPNEHVEELKDWLKGTGSHFLVLNTEEHDYVTGIVSHFPHLIAAGLVKQVEKHAGDNPLIHQLAAGGFKDITRIASSSPKMWSDIVKQNREHLMVLLKEWISEMEDLYDTVSSGDAGEIQNYFADAKEYRDSLPVRKRGAIPAYHDLYVDVLDKVGALAHITSILAREEISITNLQILEAREGLLGVLRISFQREEDRMKAKLALGEEKYQTYETI
>NC_011773.1|WP_001197259.1|2790515_2791616_-|histidinol-phosphate-transaminase
MQVKDQLSSLQPYKPGKSPEQMKEVYGDHSFVKLASNENPFGCSPRVLDELQKSWVDHALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQMISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENEIPFYQSQTNFIFLPVENGGEIYEACAHAGFIIRPFPNGVRITVGTREQNEGVISVLQQHFENKKRKSRDEANA
>NC_011773.1|WP_001269434.1|2791634_2792807_-|chorismate-synthase
MRYITAGESHGPQLTVILEGVPAGLTLTAEHINKELLRRQKGHGRGRRMQIETDTVEIVSGVRHGMTLGSPITLIVKNDDFKHWTKVMGAEPISEKESKEMKRTITKPRPGHADLNGAIKYGHRDIRNVLERSSARETTVRVAAGAVAKQILKELGVEIAGHVLEIGGVKAKHISNLSIEEIQTITENSPVRCLDKTVEQEMMDAIDNAKSSGDSIGGIVEVIAEGMPIGVGSYVHYDRKLDAKLAGAIMSINAFKGAEIGVGFEAARQPGSKVHDEILWDEEHGYTRKTNNAGGLEGGMTTGMPIVVRGVMKPIPTLYKPLASVDIDTKEAFQASIERSDSCAVPAAGVVAESVVAWELAHALVEQFGKDRMELIQQNITQHNKYAKEF
>NC_011773.1|WP_001273582.1|2793091_2794168_-|3-deoxy-7-phosphoheptulonate-synthase
MANHELDQLRKQVDEINLQLLHLLNKRGEIVQKIGEQKQVQGTKRFDPVREREVLDMIAENNEGPFETSTVQHIFKTIFKASLELQEDDNRKALLVSRKKKQENTIVDVKGELIGNGTQTFIMGPCAVESLEQVRQVGQAMKDQGLKLMRGGAFKPRTSPYDFQGLGVEGLQILRQVADEFDLAIISEILNPNDVEMALDYVDVIQVGARNMQNFDLLRAVGKVNKPVLLKRGLAATIDEFINAAEYIIAQGNDQIILCERGIRTYERATRNTLDISAVPILKKETHLPVVVDVTHSTGRRDLLLPTAKAALAIGADAVMAEVHPDPAVALSDSAQQMDIPEFHRFMEELKGFKNKLS
>NC_011773.1|WP_002036551.1|2794999_2798512_-|DUF4020-domain-containing-protein
MTFLGKGESSVWITSEVEIPDELIDHLEKGKLVLFVGAGVSMKGKSNLPNFDDLVDEIAKTLYVEKREITEPHDYYLGKIAKTKDVHQVARDLVHIEKSKPNPLHYAIPRLFPLDTEVRIVTTNFDRHFTTAMKEMNRELNVYYAPALPTGRAFKGLAYIHGNIEQEKEALILTDGDFGRAYLTEGWARRFLVDLFSNYTVLFVGYSHNDPVMKYLATGLPPSTRRYAFVAQGENTYHWEHLGIRPIVYPNKGNNHQSLVKAVKRWAELMGDNYITKRMRIRDIVTVPPSVEQEQLSYIKQSIKKIETVRYFVEFAHDYEWVEWLEAEGKLQNLFLITSNYNEVDELLAKWLVEQFLFSHQKELFQLIFKNHSKLSPLLWRTICSYLNETKMKMDPLLFARWTLLLLETAEKDSKSIATISYLLQKCSFPEHKEIALLLLTFILDGKLKLKRERKWGNDTGESIELEESSRLPVSTFSFVEQIWNEKMKPHISYYAVPIMMMGIEKMRMLSLRQAALKKRDKENVEKEFQQNDLAFLIQIVKECLAYFCENNEKKANYYITEMIEANSVLQNRIAIDAMNKNVFVSADEKMKWLLQEGILLDVTYKHEVFQLIKNHFALSLEKTKEEVIRIVLKDLAEERAFDVCFVLDLLFTCDSNSPSTAKGYELMKQKHPHFHSERYSVQKKEAAEQSITCNVTADGLLQLKDEEIMKQVQQFSQDGVFEQRHFLEMLSKACKLNTEWSISFAYQLVGMHEISNEVWFVCIREWRNNRGMTNEQIQKVIPLLQKFVRNTAFHWLISSFLYEISNRLEELEENSIRNVKRFAFSVFPQVMKSDTDFKLAKQDFYNESIQHPVGKMTAVLLKLLSYDHLYDRNVYEYLFLFEEQVRISTERTNFMIARLVADITFLYHIEKQWCRKYLLPYLELKKENEITKYAWAGLCYTQINLPLFTEMKRFIKYAVEHLEVLHPHTREAFLKWLSFVFIKCVLYWEQKTDWLYPLLIRENEENKIKFMQFLCYYVKTLSAKEQQKFWAAWLSIFLRERPKMGGITAREYVMLLRIILFMDEIVERGLLIICKSFSDVGGKGNQTELKQLFHEILEKTESIKMYKELYANVFFTLLQTLQEANLLKTEIIQIKELLIGYRVEKCVINAIDNEIIRIGIVLENLQEEM
>NC_011773.1|WP_000997708.1|2798662_2799100_+|YndM-family-protein
MNDFTVVLIKFISCIIAFSIGLALFFPATFVQIISFSLFVTIVSYMFVDKIILNRIGNTGAIMSDFLLTYLSVWIFGNILLDNYMQIAWGSILSAIVFTLSEVIVHRFSSSRTRHHNDNIHINRRFAYGTEFAEEQNILDKDKKK
>NC_011773.1|WP_000709765.1|2799248_2799779_-|cysteine-hydrolase
MKKALLVIDVQAGMYTAGMPVHNGEKFLETLQELIGECRSNDIPVIYVQHNGPKDHPLEKGTDGWKIHAAIAPLEGECVVEKTTPDSFHKTNLKEVLQDKGIDHVIISGMQTQYCVDTTTRRACSEGYKITLVSDAHSTFDTEVLRAEDIVKHHNVVFGAFADVVTLKDLKVTASK

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Crispr_ID: NC_011773_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011773_4

3345737-3345839

Orphan

Consensus_repeat	Method
AAGTTTAGGTTTCTTTTGAGAATGT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_011773_4

>merge|NC_011773|4|3345737-3345839|CRISPRCasFinder
AAGTTTAGGTTTCTTTTGAGAATGTGGTATATTTACATGCCCCGAAGTAGCCGTGGATTGTCTCCTTTCCTTCCTTGACAATTTAGGTTTCTTTTGAGAATGT

>NC_011773|4|3|3345737-3345839|CRISPRCasFinder
AAGTTTAGGTTTCTTTTGAGAATGT	GGTATATTTACATGCCCCGAAGTAGCCGTGGATTGTCTCCTTTCCTTCCTTGA
CAATTTAGGTTTCTTTTGAGAATGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011773.1\|WP_000236547.1\|3343502_3344180_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_011773.1\|WP_000544596.1\|3342899_3343409_+\|DUF3916-domain-containing-protein	unknown	unknown	gnl\|CDD\|372464
NC_011773.1\|WP_000417237.1\|3346478_3347132_-\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000164883.1\|3351526_3352993_+\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NC_011773.1\|WP_015945654.1\|3340725_3341970_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341028
NC_011773.1\|WP_000646398.1\|3350349_3351348_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
NC_011773.1\|WP_001226325.1\|3344229_3345174_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NC_011773.1\|WP_000129212.1\|3336274_3337066_+\|arylamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225073
NC_011773.1\|WP_001102724.1\|3353247_3354342_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376220
NC_011773.1\|WP_000933357.1\|3347236_3347416_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_011773.1\|WP_000915211.1\|3339005_3340139_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_011773.1\|WP_001172053.1\|3355885_3356233_-\|DUF4260-domain-containing-protein	unknown	unknown	gnl\|CDD\|379455
NC_011773.1\|WP_000351706.1\|3342055_3342907_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176133
NC_011773.1\|WP_000275807.1\|3354600_3355200_-\|protease-synthase/sporulation-negative-transcriptional-regulator-PaiB	unknown	unknown	gnl\|CDD\|377290
NC_011773.1\|WP_000473534.1\|3334517_3336059_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|236518
NC_011773.1\|WP_000445383.1\|3347748_3349368_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|366675
NC_011773.1\|WP_000137568.1\|3337182_3338970_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NC_011773.1\|WP_000798801.1\|3340395_3340626_+\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000571887.1\|3349835_3350240_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_011773.1\|WP_000592015.1\|3354338_3354527_+\|Phr-family-secreted-Rap-phosphatase-inhibitor	unknown	unknown	gnl\|CDD\|275222

Protein	Function_ID	Function_description	E-value
NC_011773.1\|WP_000236547.1\|3343502_3344180_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.62188e-20
NC_011773.1\|WP_000544596.1\|3342899_3343409_+\|DUF3916-domain-containing-protein	gnl\|CDD\|372464	pfam13079, DUF3916, Protein of unknown function (DUF3916). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 170 amino acids in length. There is a single completely conserved residue S that may be functionally important.	1.96654e-76
NC_011773.1\|WP_000275807.1\|3354600_3355200_-\|protease-synthase/sporulation-negative-transcriptional-regulator-PaiB	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	3.21866e-71
NC_011773.1\|WP_000164883.1\|3351526_3352993_+\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	0
NC_011773.1\|WP_015945654.1\|3340725_3341970_-\|MFS-transporter	gnl\|CDD\|341028	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily. This family includes the Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.19259e-96
NC_011773.1\|WP_000646398.1\|3350349_3351348_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	2.34296e-150
NC_011773.1\|WP_001226325.1\|3344229_3345174_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	3.2422e-148
NC_011773.1\|WP_000129212.1\|3336274_3337066_+\|arylamine-N-acetyltransferase	gnl\|CDD\|225073	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism].	4.1337e-48
NC_011773.1\|WP_001102724.1\|3353247_3354342_+\|hypothetical-protein	gnl\|CDD\|376220	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal. Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.	4.37294e-18
NC_011773.1\|WP_000933357.1\|3347236_3347416_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00840603
NC_011773.1\|WP_000915211.1\|3339005_3340139_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.66756e-58
NC_011773.1\|WP_001172053.1\|3355885_3356233_-\|DUF4260-domain-containing-protein	gnl\|CDD\|379455	pfam14079, DUF4260, Domain of unknown function (DUF4260). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 114 and 126 amino acids in length. There is a conserved GLK sequence motif.	2.33749e-49
NC_011773.1\|WP_000351706.1\|3342055_3342907_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176133	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold. YofA is a LysR-like transcriptional regulator of cell growth in Bacillus subtillis. YofA controls cell viability and the formation of constrictions during cell division. YofaA positively regulates expression of the cell division gene ftsW, and thus is essential for cell viability during stationary-phase growth of Bacillus substilis. YofA shows significant homology to SoxR from Arthrobacter sp. TE1826. SoxR is a negative regulator for the sarcosine oxidase gene soxA. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine, which is involved in the metabolism of creatine and choline. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.50852e-87
NC_011773.1\|WP_000473534.1\|3334517_3336059_-\|alpha-amylase	gnl\|CDD\|236518	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed.	0
NC_011773.1\|WP_000445383.1\|3347748_3349368_-\|FAD-dependent-monooxygenase	gnl\|CDD\|366675	pfam01494, FAD_binding_3, FAD binding domain. This domain is involved in FAD binding in a number of enzymes.	4.68308e-107
NC_011773.1\|WP_000137568.1\|3337182_3338970_+\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NC_011773.1\|WP_000571887.1\|3349835_3350240_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.05847e-15
NC_011773.1\|WP_000592015.1\|3354338_3354527_+\|Phr-family-secreted-Rap-phosphatase-inhibitor	gnl\|CDD\|275222	TIGR04429, hypothetical_protein_bmyco0001_31490, Phr family secreted Rap phosphatase inhibitor. Phr peptides are short peptides, best conserved in their amino-terminal regions, that are almost always encoded immediately downstream of a Rap phosphatase. A portion of the Phr peptide is secreted, enters another cell, and forms a quorum-sensing system by inhibiting its Rap phosphatase partner. The set of Phr peptides recognized by this N-terminal region model is disjoint from the PhrC/PhrF set recognized by pfam11131. [Regulatory functions, Protein interactions].	6.04814e-06

>NC_011773.1|WP_001226325.1|3344229_3345174_-|glycerophosphodiester-phosphodiesterase
MRKIISVLVIFFMTGSIFAGGAVHAKAEGKHEWNKNKFLNIAHRGASGHAPEHTFASYDLVKKMKADYLELDIQLTKDGQLIAMHDTAVDRTTNGTGEVRDKTLSEIKSLDAGSWFNKAYPEKAKQEYVGQKVPTLEEIFQKYGRSMKYYIETKSPDVYPGMEEKLLALLEKYNLIGQNMSSSRVMIQSFSKDSLKKIHSMNENIPLVQLLWYYPNENNEIVEWSSITHEPKRVTNEDFQEIKKYAVGIGPNLRNDNGDLIINESYMKMARQNGLLIHPYTINEKPDMRLLMKWGATGMFTNYPDRLHTVLKEK
>NC_011773.1|WP_000236547.1|3343502_3344180_+|YdcF-family-protein
MVIPKYPDVPTLTKKQIDQITEITFLKEITPQKCDVIFVFGGSHPGNWQAPLEAYRQGLGNQIIVTGGTSLHGMKHPSWNYGDLSEAEVIVNKLMEHGVPKDAIMFETNSLHSIANVMEAKKIFDFTKVNRLLFVCKSLGAGRQYRVLKKHLPKTITCIPYTFDTSFDGEFIMNRYNWMENEKSRSMIFGEYLRNVCYGRKGGIEPPEKEVHGLEEYVSYYYNLA
>NC_011773.1|WP_000544596.1|3342899_3343409_+|DUF3916-domain-containing-protein
MHEKKIRGMKRKTNAMIKRIEEHTKMFPSTFYNDEYWYMPLPVSQDFIESHKTPRKVKRLCIQTLIDRVNHLIKIKPSDTHTYRVVALISIENLWRSQIIVFKNDDYFHNFFNRNNEFQKWILLSNEIDFWETWGISICPTPQMLRFQEVIYDEDTIDEKEIWFIGELS
>NC_011773.1|WP_000351706.1|3342055_3342907_+|LysR-family-transcriptional-regulator
MDIKDLTVFYEVAKENNISHAAKNLNYVQSGVTMRMKQLENELGVPLFYRNGKGVTLTSNGEILLTYAKQIIHLMDQSIKAVQSNGTEPKGTLKIGCTESTTAVRLPSILTTYYEKYPEVELILETNTTEQLIKLVLDRKLDGAFIAGSTQHNELHSNVFHEEELVLISKKTLSSLKDIEDMNLLAFSHGCYYRSLLEDWLQEEDISPKRVLEFGTIEAILACVKSSMGVAIMMKSILKGHEHDVSFNPLPNSFNKVPTTFITRNDIFRSAALQKFMEVTHNA
>NC_011773.1|WP_015945654.1|3340725_3341970_-|MFS-transporter
MEEDGGIIVLMEERMNSTYKWVMLIVATIAQTTATLITYGVGVFALFWKEEYALTNMESGLLVSVVNVGPLFCMLFVGRLLDQYNEKILISISSFLLGSSLLLTNIVSGFNGLLFVLLLIGMFYSVSQPGGSKVILKWFPKENRGLAMGIRQAGIPIGGALAGVLIPFLTVQYNMTYAINSIACICIIGGVLFFVFYKEPYVEEEARKGHIKISFWMELKVVICKKELYPIYITGICMISLQMVLVGHFMKFLAGEQSITSIVAGTVFSVMFFSGMIGRVALAAISDVFYKGNRRIPLFIAVCASIGLILLLVMSIHTITSGVLYSVSALLGFFSIGWFSLFIAEVAELASEESVGITVSVALTLNQIAIIVAPVLFGYIVDEKGYAYAWLCIVVLLSISAVSLYRRNKKIKES
>NC_011773.1|WP_000798801.1|3340395_3340626_+|hypothetical-protein
MKNTDKRNRLDDMMFHYRVTKNNIVLIEYYGKQIMILKGTAAEKFLNKINHAHNDTEKQLIMAKVTGNFKRGNERQ
>NC_011773.1|WP_000915211.1|3339005_3340139_-|serine-hydrolase
MLKKWLIVFFIFAVFSGSVVALIHASKGKKYDIKAFSNLNNKQKHDMQEVDANEKKHYEVVAGKLDQYLKDKGFNGSVLVASKDHVILRKGYGYANMKDKVFTTPRTKYRIGSITKTVVAISIMQLKEKGKLNIEDNVNKYIPSFPADKNITLRNLLTHTSGLPDQGKGRVDAASRLKLVTWIGSQALQFPAGTGWKYTDYNYMVLAYIVEKITNKPLAEYVKENIFTPVEMHESGMGATLPEDIFLAEGYTRKDNELIAAPRLKMNWLYGCGEMYTTVEDMKRLDEAIMNGKLLSKQSVLDMFTASPARKYGFSFYTYPDYYHNHGVLAGWNTFNNFNWDKKTFVILFSNVQNGMNDTFNQEFRKMANDLIEGNGA
>NC_011773.1|WP_000137568.1|3337182_3338970_+|oligoendopeptidase-F
MTELKDRLQVADKEKWNLTDIYDTIEDWESDFHKIEVLTNELHEFNGNIHDGNSLLAYLTKSEEISSIISLMFAYARLQSDLDTRDTDAQSLVDKVSQLHVKVSAAKSFFSPFLLSVDENTLHTYIEEAEGLQYYKEDLFELYRYKKHVLNKDQEEILSQMGEALSSPQHTYGMLNNADILFGEVTSNDGEKVTLTRGMYAKLIEDESREKRKEAYKAYYKPYVQLKNSIASTLSAAIKNNVTVSKLRKYPSALEKSLFGDMVPKEVYENLIETTKKNIQSLHTYNKLRKEKLNVDELRQYDLSVDLVQGVKQDIPYDNAFDIMIESLAPLGEEYIETLKSFKDKRYIDVRETPGKRSGAYNFGVYGVHPFILLNHHDDLNSLFTLTHECGHGMHTHYSHGYQPRISAHYTIFVAEVASTVNEVLLIHHLLKEAKDANVRNHLVNHFIEKFKGTFFTQIMFAEFEKITHEMAQQGKPLNAQVFSEVYENLFREYNGDSLVFDEEVKYGWARIPHFYRPFYVYKYATGFASAIQIADKLLSGDPNAQKNYLEFLKGGSSDYPLNLLKKAGVDLTTPEPIESALNRFSELVEEFSTL
>NC_011773.1|WP_000129212.1|3336274_3337066_+|arylamine-N-acetyltransferase
MTDFQKQFFARLNIEEKQKVSFEDLPNIMYAMAQTVPFENLNVLEKNFKEISQENLKEKILVNNRGGLCYELNPTMYYFLKDAGFDVYLVSGTVYNAANSIWAVDSGHIATILKHHNELYLIEVGFGSYLPLAPVPFSGEVVQSVTGDYRIRKEITEKGNYMLEMRKNDEFLDQSSTDDWTLGYAFYIEEVDEKKANAAQKIIVEHDGSPFNKVPLIVKLTEDGHASLTKDSLTIAKNGKKTKEKVTDVQYKKLLHSKFGITL
>NC_011773.1|WP_000473534.1|3334517_3336059_-|alpha-amylase
MFKKITIVGLSVVLFLPSIYGESKVYADTINNGTLMQYFEWYAPSDGNHWNRLRTDAENLAQKGITSVWIPPAYKGTTQNDVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLKSAIEALHKQNIDVYGDVVMNHKGGADYTETVTAVEVDRNNRNVEVSGDYEISAWTGFNFPGRGDNYSNFKWKWYHFDGTDWDEGRKLNRIYKFRGIGKAWDWEVSSENGNYDYLMYADLDFDHPDVANEMKNWGTWYANELNLDGFRLDAVKHIDHEYLRDWVNHVRQQTGKEMFTVAEYWQNDIQTLNNYLAKVNYNQSVFDAPLHYNFHYASKGNGNYDMRNILNGTVMQNHPALAVTLVENHDSQPGQSLESVVSPWFKPLAYAFILTRAEGYPSVFYGDYYGTSGNSSYEIPALKDKIDPILTARKNFAYGTQRDYLDHPDVIGWTREGDSVHANSGLATLISDGPGGSKWMDVGKNNAGEVWHDMTGNQTNTVTINKDGWGQFHVSGGSVSIYVQQ
>NC_011773.1|WP_000417237.1|3346478_3347132_-|hypothetical-protein
MEKYHGKSTEQIIQKLMPGSVRSSVVMVWVVINFMILTPFLFPPTFTIYLYIILPFLLIANIWGVWVFFYKPNELRLVHILYNGFMGITFSFGSFIVIQKMAYTFIKIETPLFFIVTFLLYILTNYKLISIGMKSFLRRLNNEENDNIKISPIVYLSGLGYVIGQICIGTLSQNGLATVLILVFSLFAVVLSISGVYIWVYVDLKRKEMDGMHNGQI
>NC_011773.1|WP_000933357.1|3347236_3347416_+|hypothetical-protein
MLNLIPSVTILDPIETPKPIQAPATVPIGPPKTVPTAAATPSLAPAKALTAVVPTPIAA
>NC_011773.1|WP_000445383.1|3347748_3349368_-|FAD-dependent-monooxygenase
MESNDVPVLIVGGGLSGLASALFLAKHNIEYLLIERHLSTAIHPKAGGITFRTMELFRELGLEQRIRSAGKTLENCRGRIAVHTIAEANQEELAQMRANQYENDEKLLQKIEEISPSKQTACYQITLEEIMLQEARILGGELSFYHELVSYEQNEQGVIATIRNRETEKESVIHCDYVIAADGAKSKIREQLGISAEGRGTIGGYYMNIYFEADVSEFMQGDAFGFSMVLHPEVLGALIPVDNARRWIYHVSYDPLKGERPEDFTIERCKQIIQTAIGSTNVEPEIVSVLPWKAAESTATKFQDNRIFLVGDSAHIMPPTGGFGSNTGIQDAHNLAWKLAAVIKGKAKPKLLETYHEERYPVAKLTTAYASSLLFRAANREEGSLNKMDGLAVTAGYHYSSDAIIDDAVTPHRMDIVQLNGRPGTRAPHFIGMYEEKEVSVLDLLGNDFVLLTGAENDSWAESAHTVSAKLGVNIKVYRVGLSGDFIAQENIFSELYGLSDGGAVLIRPDAFIGWRSEKEVVNLDVVLEEVMSNLLCDF
>NC_011773.1|WP_000571887.1|3349835_3350240_+|winged-helix-turn-helix-transcriptional-regulator
MIEMNKQEQLNVIKKNFIDSQKVLLAIGDETRQAILLVLMETECQTGLRVGEITKQTHLSRPAVSHHLRILREAGIILMRKEGTKNFYYIDIRTKLSLLKNLVLDIEKLLHNFYPTLTGSKTPTSEFSESKEFR
>NC_011773.1|WP_000646398.1|3350349_3351348_+|NADP-dependent-oxidoreductase
MKAMIIDKYGKVPMRMAEVPIPEINEHEVLAEIHAASINPIDFKIRDGKVKMLLKYEMPLILGNDFAGVIIKVGSKVTRFKIGDEIYARPRKNKIGTFAEYIAIHEDDIALKPKNLSFEEAASIPLVGLTSYQALHDIMQLQKDQKILIHAGSGGVGTFAIQLAKIMGATVTTTASEAGSDLVKSLGADQIINYKTEKFEEILKDYDAVFDTIGGTTLEKSFDIIKSGGNIVSVSGIPNARFGKEFGSGFFKTFLFSLASKKLTALEKKHNAQYSFLFMKPSGDQLRTIANYIEAGKIKPVIDRVFPFEDAQKAMEYSEAGRAKGKIIVKMK
>NC_011773.1|WP_000164883.1|3351526_3352993_+|YdiU-family-protein
MTKNNEAGWNLDHSYTTLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALPEGAHPLAQAYAGHQFGHFNMLGDGRALLIGEQMTPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTGEPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKWQLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEALKIAQDEISKFSVQYEKQWFLGMKKKLGLFSNEEQDQSLIEQLLKMMEKFKADYTNTFRSLTLNTIENTALFESPEFKEWYKLWQSRLEKQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALSNPYAYATEQEEYCVPPAPTNRPYRTFCGT
>NC_011773.1|WP_001102724.1|3353247_3354342_+|hypothetical-protein
MNVQLQGNEQITKLFNDWYLAMLKQDVSQATNLKHEIEENELNFEEDENLALYYSLLDFRYKVLVDSLSISKDCFDKIDSYLISSNHPLAYYYHFFKGIYATLTTDFNLASEHYEQAKLLLVNNTDNLEHAEFYYRMAIFHYHFYQPIESIEYATKAKAIFDKHTGYEVKVGLCKNTLGASFVYLKQYEQAEEQYNSAIHLLQKSNEKELILSVRNNLGWLYASQNLSTLAIRHLSEVTEKKPTHFKALFLQAREHSKLDETSIAEGLIQKGVKICTELNNEEYIYHFKILNELNNNVASEELETIILKGITFFDKELLYNYTQEYSEKLAVKFYSENNHIKASEYFHKALQAKEKTFEKGALK
>NC_011773.1|WP_000592015.1|3354338_3354527_+|Phr-family-secreted-Rap-phosphatase-inhibitor
MIKKISSVFLGLSVFGILATGIHSSFTYQAGHADLPAPQRPDLVQSVDASKDYNSTTTEKVL
>NC_011773.1|WP_000275807.1|3354600_3355200_-|protease-synthase/sporulation-negative-transcriptional-regulator-PaiB
MYIPKYFAIQDEKMKYEIMEQNSFATLFSQHNGEPYATHLPLLLNRETLTLHGHFARPNEQWKDIGTQQVLAIFQGPHSYISPSWYETKNAVPTWNYVAVHVYGELELVEDEQELIDSLQDLVDTYEDPQSTYSLNDVDPNYMEGLSKGIVGFKIKISKIEGKAKLSQNHSVARRKLVVEELEKVGSEGSRGIVELMRK
>NC_011773.1|WP_001172053.1|3355885_3356233_-|DUF4260-domain-containing-protein
MQKRIVHFEGLVVFVATIYMYSLYEFSWIIFLIFLLAPDLSMLAYGINNHIGANIYNLFHTYIISILIVIIGVYFKVDTVIMIGLIWTAHIGMDRMFGYGLKYETEFKGTHIQRL

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Crispr_ID: NC_011773_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011773_5

4538833-4538940

Orphan

Consensus_repeat	Method
TATATCAGCGATTTTTTGAATATATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011773_5

>merge|NC_011773|5|4538833-4538940|CRISPRCasFinder
TATATCAGCGATTTTTTGAATATATCAACCGCAACTCGAAATATATCAGCGATTTTTTGAATATATCGACCACAACTCGAAATATATCAGCGATTTTTTGAATATATC

>NC_011773|5|4|4538833-4538940|CRISPRCasFinder
TATATCAGCGATTTTTTGAATATATC	AACCGCAACTCGAAATATATCAGCGATTTTTTGAATATATCGACCACAACTCGAAA
TATATCAGCGATTTTTTGAATATATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011773.1\|WP_000636599.1\|4536099_4536372_-\|DUF3917-domain-containing-protein	unknown	unknown	gnl\|CDD\|372449
NC_011773.1\|WP_001998456.1\|4540605_4541163_-\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|227109
NC_011773.1\|WP_000414135.1\|4544271_4544616_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_011773.1\|WP_003298453.1\|4531540_4532230_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011773.1\|WP_001010616.1\|4543086_4543491_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|369049
NC_011773.1\|WP_001031383.1\|4544612_4545275_+\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000637881.1\|4536900_4537137_+\|DUF3949-domain-containing-protein	unknown	unknown	gnl\|CDD\|315735
NC_011773.1\|WP_000023841.1\|4532231_4533686_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_011773.1\|WP_000738010.1\|4539145_4540162_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227188
NC_011773.1\|WP_001103304.1\|4537535_4538534_-\|catabolite-control-protein-A	unknown	unknown	gnl\|CDD\|130546
NC_011773.1\|WP_000219465.1\|4545330_4546641_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_011773.1\|WP_001039679.1\|4534595_4535522_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_011773.1\|WP_000757114.1\|4542457_4542892_-\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000654739.1\|4541305_4542421_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|225191
NC_011773.1\|WP_000267000.1\|4535650_4536049_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|184416
NC_011773.1\|WP_000475145.1\|4533835_4534516_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_011773.1\|WP_000389134.1\|4536522_4536819_+\|hypothetical-protein	unknown	unknown	unknown
NC_011773.1\|WP_000494669.1\|4543581_4544136_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_011773.1\|WP_002037151.1\|4537138_4537501_+\|DUF4288-domain-containing-protein	unknown	unknown	gnl\|CDD\|379479
NC_011773.1\|WP_001057490.1\|4540279_4540606_-\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|378538

Protein	Function_ID	Function_description	E-value
NC_011773.1\|WP_000636599.1\|4536099_4536372_-\|DUF3917-domain-containing-protein	gnl\|CDD\|372449	pfam13055, DUF3917, Protein of unknown function (DUF3917). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	5.28169e-24
NC_011773.1\|WP_001998456.1\|4540605_4541163_-\|DUF948-domain-containing-protein	gnl\|CDD\|227109	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only].	4.44562e-36
NC_011773.1\|WP_000414135.1\|4544271_4544616_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	3.74036e-24
NC_011773.1\|WP_003298453.1\|4531540_4532230_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.09551e-84
NC_011773.1\|WP_001010616.1\|4543086_4543491_-\|PH-domain-containing-protein	gnl\|CDD\|369049	pfam06713, bPH_4, Bacterial PH domain. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown. Members of this family have a PH domain like structure.	3.63434e-10
NC_011773.1\|WP_000637881.1\|4536900_4537137_+\|DUF3949-domain-containing-protein	gnl\|CDD\|315735	pfam13133, DUF3949, Protein of unknown function (DUF3949). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 69 and 87 amino acids in length.	3.03202e-25
NC_011773.1\|WP_000023841.1\|4532231_4533686_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.92307e-62
NC_011773.1\|WP_000738010.1\|4539145_4540162_-\|hypothetical-protein	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	2.02404e-64
NC_011773.1\|WP_001103304.1\|4537535_4538534_-\|catabolite-control-protein-A	gnl\|CDD\|130546	TIGR01481, catabolite_control_protein_A, catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways. [Regulatory functions, DNA interactions].	0
NC_011773.1\|WP_000219465.1\|4545330_4546641_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_011773.1\|WP_001039679.1\|4534595_4535522_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.06989e-49
NC_011773.1\|WP_000654739.1\|4541305_4542421_+\|aminopeptidase	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	2.90365e-128
NC_011773.1\|WP_000267000.1\|4535650_4536049_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|184416	PRK13955, mscL, large conductance mechanosensitive channel protein MscL.	8.87775e-77
NC_011773.1\|WP_000475145.1\|4533835_4534516_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.4834e-25
NC_011773.1\|WP_000494669.1\|4543581_4544136_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	4.94599e-26
NC_011773.1\|WP_002037151.1\|4537138_4537501_+\|DUF4288-domain-containing-protein	gnl\|CDD\|379479	pfam14119, DUF4288, Domain of unknown function (DUF4288). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.	1.57432e-19
NC_011773.1\|WP_001057490.1\|4540279_4540606_-\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|378538	pfam11009, DUF2847, Protein of unknown function (DUF2847). Some members in this bacterial family of proteins with unknown function are annotated as YtxJ, a putative general stress protein. This cannot be confirmed.	4.38943e-48

>NC_011773.1|WP_001103304.1|4537535_4538534_-|catabolite-control-protein-A
MNVTIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISNTFYAELARGIEDIATMYKYNIILSNSDQNKEKEFHLLNTMLGKQVDGIVFMGEDITDIHIEEFKKSPVPIVLAASFDEQNETPSVNIDYTQAAYDAMKHFIEQGHKRIGFVSGPFIDKAGSAKKLQGYKNALEEAGISYDENLVIDGDYTYDSGIEAFEKLWSLDEKPSAIFVSSDEMALGVIHAAQDAGLNVPTDVEVLGFDNTRLALMVRPQLSTVVQPMYDIGAVAMRLLTKYMNKEKVEDHTVILPHRIQFRDSTK
>NC_011773.1|WP_002037151.1|4537138_4537501_+|DUF4288-domain-containing-protein
MYAVKLLFESVHSGEPDPTKIDEHYEKNHDTLFEESIILVKASGLEEAHALGEQIAIQSEHTYDNMYGEQITWTFRKVLHVFELDNAPFETGKELYARFLHVKKNETVDTIIQTYYPEYK
>NC_011773.1|WP_000637881.1|4536900_4537137_+|DUF3949-domain-containing-protein
MIWISLIVLAYFIILVPIQYNYIKILKEKQKKMNMSQNELYDNMSYEESQIHYHYQSNVFTIPASLVASIIYRVKHAA
>NC_011773.1|WP_000389134.1|4536522_4536819_+|hypothetical-protein
MEDDIVGYFKQVERYDYIIIDLDKKFFYMEVVQLKTNITSLKISLNLDKDETIIAGNVKQYDPSRLEQFIQNFKHTAQTCLEHNLRSPEELFAFWKGN
>NC_011773.1|WP_000636599.1|4536099_4536372_-|DUF3917-domain-containing-protein
MIVLWIITLCMTAIFAYMTLKQNGLKRFVPGSILAGIALITYVTSIFIESVSVDMSTSLMFMGITLFASSIMVLMVAGIILFIHMNSETL
>NC_011773.1|WP_000267000.1|4535650_4536049_+|large-conductance-mechanosensitive-channel-protein-MscL
MWNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLGGVDFTDLKITFGKSSIMYGNFIQTIFDFLIIAAAIFMFVKVFNKLTSKREEEKEEEIPEPTKEEEILGEIRDLLKQQNSSKDRA
>NC_011773.1|WP_001039679.1|4534595_4535522_+|Gfo/Idh/MocA-family-oxidoreductase
MNKPKIGMIGLGSIAQKAYLPTLSKETDWNFVGAFTPNAEKRKQVCQQYRIQDFHSIETLASECDAIFVHSSTASHYEIVSELLKKGIDVYVDKPLAATVEQAEKLVELSEKYNRKLMVGFNRRFVPMYVAAKEQAHHISWIRIEKHRTNKVGPYTYDFTMLDDYLHIVDTARWLANDELNVVHNMMQINEKNELLYGHHTYTTANGLLLSTAMHRNAGTNLEQIELVTAGKIIRVKNMNTFEVEQENSVSQSGSPSWETTLKQRGFEDAVHHFIDCVHGDTKPLVDGLEGLKTQQMLQSLLNDINKN
>NC_011773.1|WP_000475145.1|4533835_4534516_+|ankyrin-repeat-domain-containing-protein
MFKKTLSMICCVIFLQGCSQEQEVKKEMTNMETALLTATEKQETNTVISLLKKGADINITDNKGRTPLMIATYKNDVKTAKALIDAGADVNIQDDMKNNPFLYAGAEGYLDILKLTIDAGADPSLTNRYGGTALIPASEHGYVDVIKELLTRTNIDVNHVNNLGWTALMEAIVLSNGNETQQQVIRLLIEHGADINIPDNDGVTPLEHARAHNFEEIEKILLEGHK
>NC_011773.1|WP_000023841.1|4532231_4533686_-|HAMP-domain-containing-histidine-kinase
MSIKTRFLFSYIAVILVSITLILIAGFLIVFSITGDLEAVKNFYKSSYIQKPLTSEEENAYIELKTAAKKHQSQLLDESFVSSLEKEGVKIVVRKGETISYATKVFESVALKEALPKFESANINSRGTTELGDTFYRYVKFDFYFPQEEEGSIFVLKKQSSFVDLTQKLFPILFVSLLLLAILLIGLLSYLVSRSVIKPIFVLKDATGKIKEGNLDFQIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEKVEKCGE
>NC_011773.1|WP_003298453.1|4531540_4532230_-|response-regulator-transcription-factor
MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYERLLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV
>NC_011773.1|WP_000738010.1|4539145_4540162_-|hypothetical-protein
MKKMALSFAVVSLLLGACSNDTISKKDEVIQKDTKEKSMIPRTAVSKDYYRTVIPLKEQKVINTANITTNSKLDLAEYENGLMNIAKEQFDTENHVLQLNQYIPEKLVDELVAKVKAPVLTNIIEQDYFGKQNSNELSLSGVMIGLAMSSSVSNEEAMSKGTEVANQLIEAIHKNDKYNKSPITFAIFKQESTSSLKNGTYIASATVQKNDTNLGNWNAIEEKAYSYPSDEFTQAHGEDNTKINKFAEAMKGFSPGDFIPVNAKVSYKKNQMDTLNMDIVIKYNGKTELMALTQLAAQSMLEQLPKDAKVQLQIKSENKIEAIVIKEKNSDKPFVSFL
>NC_011773.1|WP_001057490.1|4540279_4540606_-|bacillithiol-system-redox-active-protein-YtxJ
MNMTKVETIEELEVLVEKNEPYVLFKHSTTCPISHGAYTEFQAYCSEERAVPAYYLYVQDARDVSNRVAEQYSIKHESPQVLYIKDGMVVWNTSHWNIKKDALEENIK
>NC_011773.1|WP_001998456.1|4540605_4541163_-|DUF948-domain-containing-protein
MYNRGKYEKDKGSDEMQVLLYVSAAIIAVAFAVLVVYVCRTLLSVQKTLENVASTLEGLEKQMQGISVETEQLLHKTNALADDIQQKSQSLNKVVSGVDGIGTTIHSLNTKLRNVSESVTDEIENNADKVAQVVQWSSAAIEVYNHYRATRQEKKVEKEERKLERLEKKAEKKEKRSRLRMRGES
>NC_011773.1|WP_000654739.1|4541305_4542421_+|aminopeptidase
MKDPRIEKLAYNLINYSIRLQKGEKVLIENFGLQKELVTALVKEAYAAGGFPFVSLKDHQVDRSLLMGATEEHFEQIAAYEASVMKDMDAYIGLRSGDNINEQADVPSERMQIHGQTVGKKVHRDIRVPKTRWVVLRYPNASMAQLAKMSTEAFEDFYFEVCNLDYGKMDKAMDSLVTLMNKTDKVRLTGPGTDLTFSIKDIPAIKCSGHLNIPDGEVYSAPVRDSVNGTVSYNTPSPYNGYTFENVQLKFENGQIVEATANDTERINKIFDTDEGARYVGEFAIGVNPYILHPMGDILFDEKIDGSFHFTPGQAYDDAWNGNNSNIHWDLVCIQRPEYGGGEIYFDDVLIRKDGRFVVPELEALNPENLK
>NC_011773.1|WP_000757114.1|4542457_4542892_-|hypothetical-protein
MKKVLMLFVLLLTASILLIGCSTKKEKAGMNLEKAQKVEIESLTDSSEKKVITDKNEIEKLFEVMKMDKWEMQSAPLDTPQGKTFKMYQEDTTKLSESSKDKKELHEIGTMTVYKDVPYVEVEMKNKKMSFKVPEDVAKDLLKY
>NC_011773.1|WP_001010616.1|4543086_4543491_-|PH-domain-containing-protein
MNFPIQRSKSVVFFVCLTLAFMFVYPLVMIIANKEQWMSALIGMGLCFIVNVPLVWEVFIKKHKVENGVLKYGILNDDIVLKEIRIIRQVGRSLEITTNSYKVHLLAMPQHMKQFLSLVEKENPHVKIEMVGKK
>NC_011773.1|WP_000494669.1|4543581_4544136_-|GNAT-family-N-acetyltransferase
MFTLRVDDEIELQLLEKHHKEELYQLINQNRNHLRRWLPWVDGTKSADAYNEICPMWLKKFAEGDGFESGIRYKGKLVGMVGIHPVSWGKKAASLGYYLAEDAGGKGIMTRSVKAVLHYAFENLKLNKMEIRCGVENVKSRAIPERLEFKLDGILRDEEWLYDHFHDIAVYSLLASEWKEIQDK
>NC_011773.1|WP_000414135.1|4544271_4544616_+|PadR-family-transcriptional-regulator
MEKNDNFIIQLRKGVFDLAILSLISKQPMYGYEITSALQAIPVFHIPNGSIYPILNRITKNNWAISYWEESGDGPKRKYYRITDEGREILNSRLHDYDAVYHALMLLAKGEDKK
>NC_011773.1|WP_001031383.1|4544612_4545275_+|hypothetical-protein
MNKEQFFSNELIISFLHDFQKGLMNLPTSAREQHVLEIKSDLYENALSKESERIPPANIPSQVIAEFLPPKELAKEIAAEYTDVIEEAQQSTNTFIKYYSGLSIGPLGALSVPIVLGFINISANLPFVLAFIASNIWFICRENHWNTDLLKYFKTIISISSRLLIALPFTFFAIRIIITKQFDMFSFYYLIGYVLFSSIYIFLLKQLYKKNKQYQPINAF
>NC_011773.1|WP_000219465.1|4545330_4546641_-|UDP-N-acetylmuramate--L-alanine-ligase
MTVYHFVGIKGTGMSSLAQILHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKSNVKEGQVIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAHPTSYLIGDGTGHGVENSKYFVFEACEYRRHFLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKGIIACGDDEELQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQVIIDDYAHHPTEINATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGELTIEDLQKRIDGAELITDTTTDVLKKHKNGVLIFMGAGDIQKFEAAYVKEVQVAEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

259149 : 267098

uncultured_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000917306.1\|259149_259434_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	1.2e-20	53.8
WP_001029999.1\|259472_261107_+	chaperonin GroEL	A0A219YK78	uncultured_virus	2.0e-157	58.2
WP_000743900.1\|261514_263053_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.6e-21	31.2
WP_000833104.1\|263436_264762_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.2e-43	29.4
WP_000929888.1\|264907_265609_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.3e-40	36.9
WP_000719215.1\|265592_267098_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-31	30.8

DBSCAN-SWA_2

304940 : 313317

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625683.1\|304940_306248_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	6.4e-21	25.3
WP_001170542.1\|306336_307056_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	5.2e-49	44.3
WP_000278820.1\|307048_307303_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666779.1\|307299_307983_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000055577.1\|307966_310186_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.7e-162	41.2
WP_000879029.1\|310170_311586_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.3e-55	35.4
WP_001262436.1\|311692_312733_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	9.4e-68	46.4
WP_000088592.1\|312729_313317_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.2e-27	37.1

DBSCAN-SWA_3

493769 : 565745

Bacillus_phage(80.0%)

terminase,protease,tail,integrase,tRNA,portal,capsid,transposase,plate

attL 519229:519247|attR 572578:572596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_113712782.1\|493769_494675_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-26	31.3
WP_000506628.1\|494897_495428_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_001161615.1\|495482_497243_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-56	29.1
WP_000765785.1\|497256_498345_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_000932986.1\|498605_503042_-	glutamate synthase	NA	NA	NA	NA
WP_000260528.1\|503241_504546_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
WP_000843645.1\|504667_505681_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	5.8e-22	31.1
WP_000521523.1\|505673_506465_+	ABC transporter permease	NA	NA	NA	NA
WP_000639352.1\|506469_507255_+	ABC transporter permease	NA	NA	NA	NA
WP_000964357.1\|507327_507732_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_000259041.1\|507776_508232_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002002038.1\|508524_508959_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA
WP_000025061.1\|509157_509514_-	YgzB family protein	NA	NA	NA	NA
WP_000149822.1\|516319_516640_-	DUF3884 family protein	NA	NA	NA	NA
WP_000532948.1\|516992_517712_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000400446.1\|517862_518324_+	NUDIX hydrolase	NA	NA	NA	NA
WP_000664707.1\|518810_519587_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
519229:519247	attL	NA	NA	NA	NA
WP_000842723.1\|519774_520428_+	DsbA family protein	NA	NA	NA	NA
WP_000345218.1\|520815_521958_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_000260551.1\|522002_522890_+	amidase domain-containing protein	NA	NA	NA	NA
WP_000538147.1\|522948_523437_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_000664304.1\|523564_525634_+	phosphodiesterase	NA	NA	NA	NA
WP_000353280.1\|526038_527934_+	PrkA family serine protein kinase	A0MN77	Thermus_phage	9.0e-101	36.2
WP_000503509.1\|528379_529480_+	sporulation protein YhbH	A0A140HLI1	Bacillus_phage	8.3e-22	44.1
WP_000286207.1\|529464_531015_-	recombinase	D2XR37	Bacillus_phage	1.4e-253	99.5
WP_000377559.1\|531176_531356_+	hypothetical protein	D2XR40	Bacillus_phage	1.3e-17	75.0
WP_000351739.1\|531352_531787_-	ImmA/IrrE family metallo-endopeptidase	D2XR38	Bacillus_phage	3.3e-75	97.9
WP_000853781.1\|531805_532267_-	XRE family transcriptional regulator	D2XR39	Bacillus_phage	2.5e-28	55.4
WP_001101797.1\|532400_532586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000115363.1\|532629_532839_+	hypothetical protein	D2XR40	Bacillus_phage	4.7e-27	91.2
WP_000537288.1\|532880_533468_+	hypothetical protein	D2XR41	Bacillus_phage	6.9e-100	92.8
WP_000215303.1\|533480_533702_+	hypothetical protein	NA	NA	NA	NA
WP_000857130.1\|533886_534171_+	hypothetical protein	D2XR42	Bacillus_phage	6.1e-38	83.0
WP_000312144.1\|534452_535382_+	DnaD domain protein	D2XR43	Bacillus_phage	1.3e-153	92.6
WP_000063898.1\|535378_536701_+	replicative DNA helicase	D2XR44	Bacillus_phage	1.8e-244	99.1
WP_000926803.1\|536703_536892_+	hypothetical protein	D2XR45	Bacillus_phage	6.7e-25	100.0
WP_000604169.1\|536866_537136_+	hypothetical protein	D2XR46	Bacillus_phage	8.9e-47	100.0
WP_000549518.1\|537128_537491_+	hypothetical protein	D2XR47	Bacillus_phage	2.7e-62	100.0
WP_000974683.1\|537564_537756_+	DUF3954 domain-containing protein	D2XR48	Bacillus_phage	6.6e-28	98.4
WP_000778213.1\|537777_538293_+	dUTP diphosphatase	D2XR49	Bacillus_phage	1.9e-90	98.8
WP_001270899.1\|538330_538531_+	hypothetical protein	NA	NA	NA	NA
WP_000431209.1\|538575_539295_+	hypothetical protein	NA	NA	NA	NA
WP_012614791.1\|539321_539495_+	hypothetical protein	A0A140HLS3	Bacillus_phage	9.6e-10	55.6
WP_000589342.1\|539491_539869_+	hypothetical protein	A0A0D4DCF5	Staphylococcus_phage	3.6e-09	34.4
WP_001216585.1\|540185_540407_+	hypothetical protein	D2XR53	Bacillus_phage	2.0e-36	100.0
WP_041185091.1\|540863_541316_+	hypothetical protein	A0A0A7AQW7	Bacillus_phage	2.3e-63	75.3
WP_000017813.1\|541363_542059_+	hypothetical protein	A0A2I7RG90	Vibrio_phage	7.5e-21	25.7
WP_000862742.1\|542080_542218_+	hypothetical protein	NA	NA	NA	NA
WP_001041414.1\|542632_543103_+	ArpU family transcriptional regulator	A0A1B1P744	Bacillus_phage	1.2e-46	59.2
WP_001028530.1\|543099_543642_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P746	Bacillus_phage	3.8e-89	91.1
WP_001226912.1\|543844_544087_+	hypothetical protein	NA	NA	NA	NA
WP_000448700.1\|544477_544657_+	hypothetical protein	NA	NA	NA	NA
WP_001177578.1\|544647_544851_+	hypothetical protein	H0USV9	Bacillus_phage	4.4e-06	37.9
WP_000447507.1\|544854_545166_+	HNH endonuclease	A0A1B1P757	Bacillus_phage	6.5e-33	67.0
WP_000586123.1\|545169_545469_+	hypothetical protein	NA	NA	NA	NA
WP_001228911.1\|545576_545897_+	hypothetical protein	A0A1B1P762	Bacillus_phage	1.7e-44	84.9
WP_000178966.1\|545880_547551_+\|terminase	terminase large subunit	A0A1B1P766	Bacillus_phage	4.4e-301	92.3
WP_000522856.1\|547567_548761_+\|portal	phage portal protein	A0A1B1P754	Bacillus_phage	3.9e-134	60.5
WP_000217625.1\|548726_549470_+\|protease	Clp protease ClpP	Q8W605	Listeria_phage	1.4e-62	57.6
WP_000153081.1\|549507_550650_+\|capsid	phage major capsid protein	A0A1B1P752	Bacillus_phage	9.2e-125	59.3
WP_000438402.1\|550811_551117_+	hypothetical protein	A0A1B1P751	Bacillus_phage	4.0e-19	55.3
WP_000844456.1\|551100_551448_+	hypothetical protein	A0A1B1P760	Bacillus_phage	6.8e-31	62.7
WP_000950462.1\|551437_551824_+	hypothetical protein	NA	NA	NA	NA
WP_000729812.1\|551813_552236_+	hypothetical protein	R4IBU7	Listeria_phage	3.5e-21	40.4
WP_085965404.1\|552238_552814_+\|tail	phage tail protein	R4IBJ8	Listeria_phage	1.9e-54	56.0
WP_000861919.1\|552849_553302_+	hypothetical protein	NA	NA	NA	NA
WP_001273476.1\|553484_555062_+	hypothetical protein	A0A2H4JAI2	uncultured_Caudovirales_phage	4.4e-101	74.4
WP_000566742.1\|555316_555574_+	hypothetical protein	D2XR26	Bacillus_phage	1.0e-31	79.8
WP_157405710.1\|556904_557942_+	hypothetical protein	A0A2I7SCT8	Paenibacillus_phage	1.1e-20	63.2
WP_000884133.1\|557943_558621_+	hypothetical protein	A0A1C8EA72	Bacillus_phage	5.2e-83	65.5
WP_000594201.1\|558617_561041_+	peptidase S74	A0A1B1P770	Bacillus_phage	1.5e-265	58.6
WP_001064842.1\|561109_562459_+\|plate	BppU family phage baseplate upper protein	A0A1B1P836	Bacillus_phage	1.0e-37	33.8
WP_001152011.1\|562471_563143_+	hypothetical protein	A0A1B1P882	Bacillus_phage	1.4e-53	63.9
WP_000151296.1\|563184_563466_+	hypothetical protein	D2XR31	Bacillus_phage	1.2e-38	90.3
WP_000032301.1\|563468_563675_+	hypothetical protein	D2XR32	Bacillus_phage	4.0e-31	92.6
WP_000509870.1\|563674_564475_+	N-acetylmuramoyl-L-alanine amidase	D2XR33	Bacillus_phage	6.2e-112	70.9
WP_000713104.1\|564665_565178_-	hypothetical protein	D2XR34	Bacillus_phage	7.4e-50	100.0
WP_000632231.1\|565273_565522_-	hypothetical protein	D2XR35	Bacillus_phage	4.1e-38	100.0
WP_002170333.1\|565496_565745_-	winged helix DNA-binding protein	D2XR36	Bacillus_phage	6.8e-41	100.0
572578:572596	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1895064 : 1903797

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000755548.1\|1895064_1896327_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	2.6e-11	31.5
WP_001194297.1\|1896425_1897190_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000453756.1\|1897430_1899191_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.4e-265	95.3
WP_002036191.1\|1899270_1899957_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-118	93.4
WP_000823560.1\|1901052_1901640_-	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_000818985.1\|1901835_1902555_+	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	5.9e-61	100.0
WP_002036196.1\|1902670_1902784_+	hypothetical protein	W8CYT3	Bacillus_phage	2.1e-05	91.7
WP_001258549.1\|1902924_1903797_+	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	6.0e-68	46.6

DBSCAN-SWA_5

2220038 : 2227141

Bacillus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000249922.1\|2220038_2221244_-	WXG100 family type VII secretion target	A0A2H4J389	uncultured_Caudovirales_phage	1.0e-49	47.0
WP_000669607.1\|2221425_2222577_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_000637732.1\|2223921_2224386_-	restriction endonuclease	Q331T5	Clostridium_botulinum_C_phage	7.0e-15	43.2
WP_000649834.1\|2224422_2224623_-	helix-turn-helix domain-containing protein	A0A288WG80	Bacillus_phage	9.0e-20	76.6
WP_001267637.1\|2224788_2225091_+	hypothetical protein	A0A288WG38	Bacillus_phage	3.1e-24	51.5
WP_000156980.1\|2225087_2225270_+	hypothetical protein	Q2I8E2	Bacillus_phage	2.4e-19	80.0
WP_000571537.1\|2225388_2226579_+	cell division protein FtsK	A0A288WFS1	Bacillus_phage	1.2e-148	64.4
WP_009879021.1\|2226556_2227141_+	hypothetical protein	A0A288WFQ7	Bacillus_phage	1.9e-81	77.0

DBSCAN-SWA_6

4114897 : 4180127

Bacillus_phage(57.14%)

terminase,protease,tail,integrase,tRNA,head,capsid,portal,bacteriocin

attL 4142066:4142084|attR 4180160:4180178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000108695.1\|4114897_4116250_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_001190167.1\|4116256_4117006_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000872105.1\|4117151_4118090_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_000043939.1\|4118118_4119234_-	chaperone protein DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	9.9e-23	35.1
WP_000034699.1\|4119438_4121274_-	chaperone protein DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.1e-138	47.5
WP_000392710.1\|4121300_4121867_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_000954957.1\|4121981_4122998_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_041185085.1\|4123131_4124271_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_001293546.1\|4124323_4124698_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001030953.1\|4124829_4126653_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.0e-26	25.9
WP_001983721.1\|4126863_4127226_-	YqxA family protein	NA	NA	NA	NA
WP_000662639.1\|4127225_4128332_-	GPR endopeptidase	NA	NA	NA	NA
WP_001274011.1\|4128513_4128771_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_001279912.1\|4128853_4129864_-	DNA polymerase III subunit delta	D9ZNJ1	Clostridium_phage	1.7e-05	24.2
WP_000997609.1\|4130210_4130345_+	YqzM family protein	NA	NA	NA	NA
WP_041185086.1\|4130373_4132695_-	DNA internalization-related competence protein ComEC/Rec2	Q332B9	Clostridium_botulinum_C_phage	4.3e-36	36.0
WP_000439784.1\|4132709_4133267_-	ComE operon protein 2	A0A127AWN5	Bacillus_phage	2.4e-30	50.7
WP_000989926.1\|4133330_4133930_-	competence protein ComEA	NA	NA	NA	NA
WP_001020551.1\|4134007_4134835_+	late competence protein ComER	NA	NA	NA	NA
WP_001105570.1\|4135006_4135756_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_000653200.1\|4135752_4136109_-	ribosome silencing factor	NA	NA	NA	NA
WP_001078244.1\|4136105_4136675_-	HD domain-containing protein	NA	NA	NA	NA
WP_001226054.1\|4136664_4137234_-	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_000955224.1\|4137365_4137659_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_000812089.1\|4137664_4138498_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_000140795.1\|4138513_4139620_-	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA
WP_000765311.1\|4139623_4140136_-	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA
WP_000850094.1\|4140383_4140539_+	sporulation histidine kinase inhibitor Sda	NA	NA	NA	NA
WP_001254997.1\|4140685_4141474_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
4142066:4142084	attL	NA	NA	NA	NA
WP_000604232.1\|4142181_4142400_+	winged helix-turn-helix transcriptional regulator	A0A1B1P7Q3	Bacillus_phage	9.2e-18	61.2
WP_000633249.1\|4142418_4142658_+	hypothetical protein	A0A1B2APX4	Phage_Wrath	2.2e-20	59.0
WP_000509867.1\|4142690_4143527_-	N-acetylmuramoyl-L-alanine amidase	A9QTG1	Bacillus_phage	6.5e-112	66.0
WP_000389069.1\|4143526_4143754_-\|bacteriocin	bacteriocin biosynthesis protein	A0A2H4JGN9	uncultured_Caudovirales_phage	2.0e-23	98.6
WP_000822818.1\|4143805_4144765_-\|integrase	tyrosine-type recombinase/integrase	D2XR30	Bacillus_phage	2.0e-173	94.0
WP_000511058.1\|4144832_4145288_-	DUF2441 domain-containing protein	NA	NA	NA	NA
WP_001103982.1\|4145417_4145558_-	XkdX family protein	NA	NA	NA	NA
WP_001223909.1\|4145557_4145908_-	hypothetical protein	NA	NA	NA	NA
WP_000106369.1\|4145924_4146293_-	hypothetical protein	NA	NA	NA	NA
WP_000482705.1\|4146289_4148161_-	hypothetical protein	NA	NA	NA	NA
WP_000962012.1\|4148211_4149828_-	hypothetical protein	A0A0K1LLF9	Bacillus_phage	1.4e-81	33.9
WP_000550759.1\|4149838_4150660_-\|tail	phage tail family protein	A0A2H4JBY6	uncultured_Caudovirales_phage	1.3e-75	55.5
WP_041185087.1\|4150659_4155345_-\|tail	phage tail tape measure protein	D6R3Z8	Bacillus_phage	7.4e-104	35.0
WP_000662581.1\|4155510_4155900_-	hypothetical protein	NA	NA	NA	NA
WP_001013841.1\|4155957_4156563_-\|tail	tail protein	A0A2H4JET9	uncultured_Caudovirales_phage	5.7e-49	52.4
WP_001205302.1\|4156566_4156941_-	DUF3168 domain-containing protein	A0A2H4JAR3	uncultured_Caudovirales_phage	1.9e-23	47.5
WP_000002525.1\|4156937_4157372_-	hypothetical protein	A0A1B1P7R6	Bacillus_phage	5.2e-28	43.8
WP_001275012.1\|4157364_4157697_-\|head	phage head closure protein	A0A2H4JHA9	uncultured_Caudovirales_phage	3.0e-12	43.6
WP_001181001.1\|4157693_4157969_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBP7	Clostridium_phage	8.4e-08	44.7
WP_000695231.1\|4158016_4159216_-\|capsid	phage major capsid protein	Q4ZCT8	Staphylococcus_virus	2.5e-88	47.8
WP_000676687.1\|4159231_4159951_-\|head,protease	HK97 family phage prohead protease	A0A1B2APW1	Phage_Wrath	3.6e-18	32.3
WP_001254376.1\|4159954_4161133_-\|portal	phage portal protein	A0A0U3SQF0	Bacillus_phage	2.1e-76	42.1
WP_000153209.1\|4161163_4162852_-	hypothetical protein	A0A1B1P7R3	Bacillus_phage	1.1e-134	44.2
WP_000343051.1\|4162841_4163225_-\|terminase	phage terminase small subunit P27 family	A0A1B1P7R2	Bacillus_phage	5.5e-50	73.2
WP_015945683.1\|4163402_4163708_-	hypothetical protein	NA	NA	NA	NA
WP_000201452.1\|4163713_4164067_-	HNH endonuclease	A0A0C5AEM7	Paenibacillus_phage	2.3e-26	57.6
WP_000813721.1\|4164056_4164383_-	hypothetical protein	NA	NA	NA	NA
WP_000357096.1\|4164901_4165237_-	hypothetical protein	NA	NA	NA	NA
WP_000789356.1\|4165285_4165504_-	hypothetical protein	NA	NA	NA	NA
WP_001055137.1\|4165705_4166248_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7Y2	Bacillus_phage	6.3e-92	95.0
WP_000744471.1\|4166244_4166715_-	ArpU family transcriptional regulator	A0A1B1P744	Bacillus_phage	6.8e-58	70.3
WP_000862742.1\|4167098_4167236_-	hypothetical protein	NA	NA	NA	NA
WP_000017813.1\|4167257_4167953_-	hypothetical protein	A0A2I7RG90	Vibrio_phage	7.5e-21	25.7
WP_157405708.1\|4167997_4168978_-	DNA (cytosine-5-)-methyltransferase	D2IZY5	Enterococcus_phage	6.1e-93	54.1
WP_000521775.1\|4169008_4169350_-	hypothetical protein	NA	NA	NA	NA
WP_001037530.1\|4169503_4169689_-	hypothetical protein	NA	NA	NA	NA
WP_015945685.1\|4169726_4170149_-	hypothetical protein	A0A1B1P7B4	Bacillus_phage	1.7e-76	95.0
WP_157405716.1\|4170189_4170642_-	hypothetical protein	U5PVF9	Bacillus_phage	6.1e-32	43.9
WP_000418882.1\|4170870_4171050_-	hypothetical protein	A0A0U3B243	Bacillus_phage	1.0e-14	67.8
WP_001255655.1\|4171241_4171463_-	hypothetical protein	NA	NA	NA	NA
WP_000974689.1\|4171478_4171670_-	DUF3954 domain-containing protein	D2XR48	Bacillus_phage	6.8e-25	90.5
WP_001126007.1\|4171745_4172108_-	hypothetical protein	D2XR47	Bacillus_phage	2.2e-56	90.0
WP_000926795.1\|4172082_4172271_-	hypothetical protein	D2XR45	Bacillus_phage	2.2e-15	88.5
WP_000063894.1\|4172273_4173596_-	replicative DNA helicase	D2XR44	Bacillus_phage	6.9e-241	97.3
WP_000312165.1\|4173592_4174534_-	DnaD domain protein	D2XR43	Bacillus_phage	4.6e-138	85.3
WP_000857129.1\|4174817_4175102_-	hypothetical protein	D2XR42	Bacillus_phage	5.2e-45	93.6
WP_000215306.1\|4175282_4175504_-	hypothetical protein	NA	NA	NA	NA
WP_000537284.1\|4175516_4176104_-	hypothetical protein	D2XR41	Bacillus_phage	7.8e-104	94.9
WP_015945687.1\|4176192_4176441_-	hypothetical protein	NA	NA	NA	NA
WP_000405169.1\|4176495_4176687_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000172327.1\|4176856_4177276_+	helix-turn-helix transcriptional regulator	D2XR39	Bacillus_phage	3.9e-33	59.7
WP_000351731.1\|4177289_4177724_+	ImmA/IrrE family metallo-endopeptidase	D2XR38	Bacillus_phage	6.5e-63	82.4
WP_000760416.1\|4177759_4178359_+	hypothetical protein	NA	NA	NA	NA
WP_000844795.1\|4178573_4180127_+	serine recombinase	I3VYZ3	Thermoanaerobacterium_phage	7.8e-151	53.4
4180160:4180178	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4263857 : 4318710

Klosneuvirus(25.0%)

integrase,protease,coat,tRNA

attL 4283975:4283994|attR 4299907:4299926

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000690814.1\|4263857_4265705_-\|coat	spore coat assembly protein ExsA	NA	NA	NA	NA
WP_000025295.1\|4266079_4267186_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_001092245.1\|4267216_4268050_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_001138563.1\|4268069_4269599_-	L-aspartate oxidase	NA	NA	NA	NA
WP_000973794.1\|4269751_4270891_+	aminotransferase class V-fold PLP-dependent enzyme	A0A1X7QGF3	Faustovirus	7.7e-31	28.9
WP_000812272.1\|4270893_4271436_+	transcription repressor NadR	NA	NA	NA	NA
WP_000510694.1\|4271517_4272165_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_000621730.1\|4272246_4273098_-	prephenate dehydratase	NA	NA	NA	NA
WP_001026345.1\|4273194_4275111_-	ABC transporter permease	NA	NA	NA	NA
WP_001011379.1\|4275160_4277083_-	ABC transporter permease	NA	NA	NA	NA
WP_000114531.1\|4277057_4277834_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.2e-19	31.0
WP_000865405.1\|4277927_4279010_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_000276720.1\|4278999_4279707_-	response regulator transcription factor	NA	NA	NA	NA
WP_000496110.1\|4279846_4281133_-	GTPase ObgE	NA	NA	NA	NA
WP_001037006.1\|4281132_4281681_-	sporulation protein	NA	NA	NA	NA
WP_000944957.1\|4281744_4282035_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_001973720.1\|4282038_4282383_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_000270907.1\|4282394_4282703_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_000855430.1\|4282872_4284261_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
4283975:4283994	attL	NA	NA	NA	NA
WP_000599079.1\|4284328_4285189_-	stage IV sporulation protein SpoIVFB	NA	NA	NA	NA
WP_000797461.1\|4285181_4285928_-	stage IV sporulation protein SpoIVFA	NA	NA	NA	NA
WP_000503310.1\|4286061_4286859_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_000391517.1\|4286861_4287548_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_000975747.1\|4287583_4288129_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_001135477.1\|4288143_4288995_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000466737.1\|4289036_4290056_-	rod shape-determining protein MreB	NA	NA	NA	NA
WP_000760789.1\|4290612_4292253_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	4.3e-51	31.0
WP_001265888.1\|4292269_4292608_-	mercury resistance system substrate-binding protein MerP	NA	NA	NA	NA
WP_000660890.1\|4292626_4292929_-	mercuric transport protein MerT	NA	NA	NA	NA
WP_000799119.1\|4292925_4293195_-	hypothetical protein	NA	NA	NA	NA
WP_001160578.1\|4293208_4293607_-	mercury resistance transcriptional regulator MerR1	NA	NA	NA	NA
WP_000198309.1\|4293797_4294163_-	hypothetical protein	NA	NA	NA	NA
WP_000671711.1\|4294164_4296078_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000867972.1\|4296081_4297167_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WIF9	Clostridium_phage	4.9e-11	25.9
WP_001013375.1\|4297280_4297841_-	JAB domain-containing protein	NA	NA	NA	NA
WP_001226272.1\|4297887_4298463_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_000360979.1\|4298684_4299647_-	hypothetical protein	NA	NA	NA	NA
WP_000582046.1\|4299812_4301114_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
4299907:4299926	attR	NA	NA	NA	NA
WP_000072239.1\|4301207_4303853_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	4.7e-164	42.9
WP_000366998.1\|4304248_4305274_-\|coat	spore coat protein YsxE	NA	NA	NA	NA
WP_002037253.1\|4305336_4306350_-	stage VI sporulation protein D	NA	NA	NA	NA
WP_001224512.1\|4306429_4307719_-	glutamate-1-semialdehyde 2,1-aminomutase	A0A1V0SKB7	Klosneuvirus	1.7e-05	34.1
WP_001087068.1\|4307718_4308708_-	porphobilinogen synthase	NA	NA	NA	NA
WP_000992329.1\|4308728_4309481_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_001226418.1\|4309482_4310412_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_000008996.1\|4310427_4311261_-	cytochrome c assembly protein	NA	NA	NA	NA
WP_000547860.1\|4311278_4312613_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_000568752.1\|4313028_4313481_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000359781.1\|4313483_4313900_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_000869113.1\|4313932_4314529_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
WP_000097302.1\|4314525_4316856_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.9e-178	43.8
WP_009879805.1\|4317039_4318710_-\|protease	ATP-dependent protease LonB	E3T4F6	Cafeteria_roenbergensis_virus	9.6e-14	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011773

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection