CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_011734	Gloeothece citriformis PCC 7424 plasmid pP742406, complete sequence	0 crisprs	NA	0	0	0
NC_011733	Gloeothece citriformis PCC 7424 plasmid pP742405, complete sequence	0 crisprs	NA	0	0	0
NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	1 crisprs	cas3,cas2,cas1,cas5,cas7,cas8b3,cas6	0	15	1
NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	1 crisprs	cmr4gr7,cmr5gr11,WYL,csm6,RT,cas1,cas2	0	9	2
NC_011730	Gloeothece citriformis PCC 7424 plasmid pP742403, complete sequence	0 crisprs	NA	0	0	0
NC_011729	Gloeothece citriformis PCC 7424, complete sequence	46 crisprs	cas14j,cas14k,DEDDh,c2c9_V-U4,cas6,cas5,cas7,cas8a4,cas3,Cas14c_CAS-V-F,cas10,cmr3gr5,cmr4gr7,cmr5gr11,Cas14u_CAS-V,RT,csa3,WYL,cas10d,csc2gr7,csc1gr5,cas4,cas1,cas2,PD-DExK,cas8b3,DinG,cas8e,cse2gr11,cas6e,Cas9_archaeal,csx15,2OG_CAS	6	50	4
NC_011732	Gloeothece citriformis PCC 7424 plasmid pP742404, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011738_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011738_1

262869-263274

TypeIII-A

N:A

Consensus_repeat	Method
GTTTCCAACTATTCCTATTTAACCCAATAGGTAGGG	PILER-CR
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGA	CRISPRCasFinder
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CRT

5 spacers

csm6,WYL,RT,cas1,cas2

The CRISPR arrays of NC_011738_1

>merge|NC_011738|1|262869-263274|PILER-CR,CRISPRCasFinder,CRT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGACTCTTTTTGGAGAAAGCGCGATCGGCAAATCTCTCCCGAACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGATCCTCCCCTCGCTTCGGGTTAGCAATACTTGAAGCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGAGTCGAACTTAAAAATCATTCCATCGAGAGTAATCCCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACATTTTTTTGGTCTTCTTTGTATTTGATGTCCTCAACCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCAGAACCAATTTCTTATCTAGATTTTCAATGGCAGTTTTGCCCTACCTATTGAGTTAAATAAGACTTCTCCCTTGA

>NC_011738|1|1|262869-263198|PILER-CR
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GACTCTTTTTGGAGAAAGCGCGATCGGCAAATCTCTCCCGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GATCCTCCCCTCGCTTCGGGTTAGCAATACTTGAAGC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GAGTCGAACTTAAAAATCATTCCATCGAGAGTAATC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	ATTTTTTTGGTCTTCTTTGTATTTGATGTCCTCAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC

>NC_011738|1|1|262869-263200|CRISPRCasFinder
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGA	CTCTTTTTGGAGAAAGCGCGATCGGCAAATCTCTCCCGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGA	TCCTCCCCTCGCTTCGGGTTAGCAATACTTGAAGC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACGA	GTCGAACTTAAAAATCATTCCATCGAGAGTAATC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACAT	TTTTTTGGTCTTCTTTGTATTTGATGTCCTCAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAACCA

>NC_011738|1|1|262869-263274|CRT
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GACTCTTTTTGGAGAAAGCGCGATCGGCAAATCTCTCCCGAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GATCCTCCCCTCGCTTCGGGTTAGCAATACTTGAAGC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	GAGTCGAACTTAAAAATCATTCCATCGAGAGTAATC
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	ATTTTTTTGGTCTTCTTTGTATTTGATGTCCTCAA
CCCTACCTATTGGGTTAAATAGGAATAGTTGGAAAC	CAGAACCAATTTCTTATCTAGATTTTCAATGGCAGTTTTG
CCCTACCTATTGAGTTAAATAAGACTTCTCCCTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011738.1\|WP_012599787.1\|255130_255487_+\|hypothetical-protein	unknown	unknown	unknown
NC_011738.1\|WP_012599796.1\|265617_266622_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_011738.1\|WP_012599785.1\|254243_254873_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NC_011738.1\|WP_012599788.1\|257316_257991_+\|hypothetical-protein	unknown	unknown	unknown
NC_011738.1\|WP_012599799.1\|271409_271904_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225269
NC_011738.1\|WP_012599801.1\|272235_273852_-\|hypothetical-protein	unknown	unknown	unknown
NC_011738.1\|WP_157867673.1\|258046_259420_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350691
NC_011738.1\|WP_012599790.1\|259422_260007_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|379122
NC_011738.1\|WP_012599797.1\|266622_266898_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_011738.1\|WP_012599800.1\|271900_272122_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377095
NC_011738.1\|WP_012599486.1\|255982_257116_-\|ISAs1-like-element-ISCysp8-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_011738.1\|WP_012599802.1\|274515_275268_-\|hypothetical-protein	unknown	unknown	unknown
NC_011738.1\|WP_157867674.1\|261506_262655_+\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_011738.1\|WP_012599791.1\|260006_261383_-\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	gnl\|CDD\|274901
NC_011738.1\|WP_012599786.1\|254893_255118_+\|hypothetical-protein	unknown	unknown	unknown
NC_011738.1\|WP_012599783.1\|252601_252841_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_011738.1\|WP_012599793.1\|263336_263669_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	unknown	unknown	gnl\|CDD\|236638
NC_011738.1\|WP_012599795.1\|264544_265474_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_011738.1\|WP_157867667.1\|270936_271074_-\|hypothetical-protein	unknown	unknown	unknown
NC_011738.1\|WP_012599794.1\|263671_264190_+\|type-II-toxin-antitoxin-system-YhaV-family-toxin	unknown	unknown	gnl\|CDD\|371659

Protein	Function_ID	Function_description	E-value
NC_011738.1\|WP_012599785.1\|254243_254873_+\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	1.81024e-94
NC_011738.1\|WP_012599799.1\|271409_271904_-\|hypothetical-protein	gnl\|CDD\|225269	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	5.92427e-14
NC_011738.1\|WP_157867673.1\|258046_259420_+\|AAA-family-ATPase	gnl\|CDD\|350691	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins. RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.3377e-27
NC_011738.1\|WP_012599796.1\|265617_266622_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	9.66066e-109
NC_011738.1\|WP_012599790.1\|259422_260007_-\|HD-domain-containing-protein	gnl\|CDD\|379122	pfam13328, HD_4, HD domain. HD domains are metal dependent phosphohydrolases.	6.1465e-37
NC_011738.1\|WP_012599797.1\|266622_266898_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.04135e-25
NC_011738.1\|WP_012599800.1\|271900_272122_-\|hypothetical-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	2.91303e-08
NC_011738.1\|WP_012599486.1\|255982_257116_-\|ISAs1-like-element-ISCysp8-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	2.44104e-41
NC_011738.1\|WP_157867674.1\|261506_262655_+\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.90208e-46
NC_011738.1\|WP_012599791.1\|260006_261383_-\|TIGR03985-family-CRISPR-associated-protein	gnl\|CDD\|274901	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family. Members of this protein family belong to CRISPR-associated (Cas) gene clusters. The majority of members are Cyanobacterial.	1.26172e-128
NC_011738.1\|WP_012599783.1\|252601_252841_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	9.5634e-07
NC_011738.1\|WP_012599793.1\|263336_263669_+\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	gnl\|CDD\|236638	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin.	1.24879e-59
NC_011738.1\|WP_012599795.1\|264544_265474_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	8.49242e-101
NC_011738.1\|WP_012599794.1\|263671_264190_+\|type-II-toxin-antitoxin-system-YhaV-family-toxin	gnl\|CDD\|371659	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system. YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity.	2.81672e-88

>NC_011738.1|WP_157867674.1|261506_262655_+|putative-CRISPR-associated-protein
MNEQNRAKVIISTVGTSLLTNQINRETERDWFKQLSNHANLTWDNLPNSVKEIIEELKFRASEQLKQNNLKKIRQASAELNGVFGIYDNDLTTGKVDLHYLIATDTAQGQATAEIVQAFLLQRGLSVNIYTPSGLSTANTSAFSEGIDQLIVWLREEIVKNYRGGYKIYFNLVGGFKSLQGYLNTLAMFYADAIAYIFEGENSELITIPRLPISIDHSVIEIYKVPLALMSNGAELSVSEVGGIPESLVYAVDGVLILSTWGKLFWGECKDEFLSGDLLEFKGLVYLDSFLQDYKKAKNPLQRIQLQNTLAKVCCFLEKSGGDTAILRGNNAGGILYDSYTGKYSQYDHFRVSLNWRVSCVAKEGVLYLRHFGEHDDVNNNP
>NC_011738.1|WP_012599791.1|260006_261383_-|TIGR03985-family-CRISPR-associated-protein
MSMFAPSLGLFEKLVPELLKIKTRQNNLQKNHKREYYLSLLKTATIRWIIIRSLYDEESQYWFNNSSNPFKCIDWFQTFQKKSPKFSQLVTDYWLFDEYTDLIKQSFLTSLQKRYHLSSDQIEQFLTACPFQIDEKTLRNNFTALSLQKDQLIEKPERGHYQKISRNQLNSILENLKNSVELDLTFMTEDVASIVELLITKLQGKQRLFIHHNYVVPEGQREMVADKADFLKEIWKKQPTPPLEITYYSASLNKKDNYIVYPVCLYYYQRAYYLCAYGQAPENFKRHEQWYNYRLERILDLTEISWQGDKLPLTKDQIINDEKSYNPDYIQEQLKKAYGFDFYQPIDQMLLKFEPDFARRYINNSFRHQTFEKIEDIEEIISFIKQAKTAIQEQLIAKVKNFPHYDYYILSYRKNDNNVIMRLRSWSPNVEVLLPTELRQQIREDFLLTWQYYQDDVL
>NC_011738.1|WP_012599790.1|259422_260007_-|HD-domain-containing-protein
MNNNQFPLLTDRFQKALVYATQLHAQQVRKGSNVPYISHLLSVAALVLEDGGDEDEAIAGLLHDAIEDQGGEATRQEICRQFGDRVAEIVEGCTDSDTIPKPPWRERKQAYIERFPRASSSVRRVSLADKLHNARSLVADYYSQKQATWNKFKGGREGTLWYYRSIIEAARQAGECGFLLEELETVVQYLENCA
>NC_011738.1|WP_157867673.1|258046_259420_+|AAA-family-ATPase
MSYEGFHESSHPPTQLFYRFQFPLTKQQRKALFKLWQFVHSDECFFLVKGYAGTGKSTIIFALLAELQRLGSQIVLCAPTNKAVNILSAIAVSNNVFIPTMTIHQLLGLGVRNLNGEKVLTQTGPSSLHLYNLVILDECSMVNRELWKYIQAAFEQSFCLKKRQLIAMGDPAQLNPIGELSSPSFSISNRVCLNEVVRQGQSPLLDFITGWRTALSNKELLVPTSMYDPLNKQGAFKVGRDRIISYGIRKIERYFDKDPDRFRILCYSNIQVGNYNRRIRQAIYGSHSNQFIPGERLITKSPVVAPDGKTILLPTSTEFTVTGTTPTQYYGYQAWALTIACEGGTKQIYTLDKNEENRFQKTLQSLLEKAKANPYFWRKYYQFKEDIFAQVTNCYALTVHNSQGSTFTEGAVDGDDIHKRLYVGEESRKFKEKEFLRLWYVASSRFRKRLLFCRKSA
>NC_011738.1|WP_012599788.1|257316_257991_+|hypothetical-protein
MQSIENNLITLKDNKTDTIYQLPLDTFHQYGKPFAHVVSFPPYQYSLDELNHLWNIGLTELTEQQLIKKGIYGFILNGKVWDKTNEKFGEITELIPQNLQIQIRWDETRHINYTALELKALNIFPIHFIKLSRHVAYELSLDEESYLKAYISFKTKKLAQQWFPILNPLIGKLSALNKHENPVYQHLPPFIWEYEVEKFKHKILNNKLKILRKIASLDLQEPPP
>NC_011738.1|WP_012599486.1|255982_257116_-|ISAs1-like-element-ISCysp8-family-transposase
MKLRFKRTICDYFSDIKDPRLERRKRHKLIDIITITICAIISGVQQWTEIEAYGQAKSKWFKKMLELPNGIPSHDTFSRVFQILDPEELRKGFLKWVQSVYEITEGEIVPIDGKTLKGSSDMTNDQKAIHMVSAWASKNRLVLGQIKVDKKSNEITAIPTLLKLLKLKGCIVTIDAMGCQRKIVDEIVKQEADYLITVKKNQSSLYKILEELFKPTLNSKNLPPNAQVDCEDNWDHGRDERRDVTVLNNIQPVTDLSSKWKNLKSIIKVEYVQFDSKGKMKYNRRYFISSLLLDAKSFAKIIRTHWTIENQMNWVLDVQLGEDASRIRKGHSPENLAIIRHLALSLINQETTLKKSVKGKQNKAGWDNNYLSKILAI
>NC_011738.1|WP_012599787.1|255130_255487_+|hypothetical-protein
MIQLDEFSVGTIVYQRSPKKKEYGVVIKIISDDYRPIIIRWDCEPQERYSYTLDEIEVIKIQIVPFLQPQKTLVKLLPNQPIPLSNGKTIILLQSAVCPGQSHLILLSYLDKLSSNVN
>NC_011738.1|WP_012599786.1|254893_255118_+|hypothetical-protein
MSQHSLVLIVFTETTTFNKLELYQLFQIDQTPDIWIKITNEQGCIINHHHSTLKNFFQHQQVIILIPDTIEEEQ
>NC_011738.1|WP_012599785.1|254243_254873_+|uracil-DNA-glycosylase
MKQRSLLDILPSSNSTSPLKTLKKTCARCTQCGLHKNRTKVVFGSGTLEADIMLIGEAPGQTEDKTGKPFTGKAGKLLDKMLASINLERGQIYLTNIIKCRPPNNRTPTEKEIETCRPYLLAQIEFINPKFIVLAGGSAYRGLTGKRKPISQVRGKWFKWHNSKCISIFHPAYLLRNPSLEKGSPKWLTWQDLISLKRKLNKLTTKLHQ
>NC_011738.1|WP_012599783.1|252601_252841_-|helix-turn-helix-transcriptional-regulator
MRYKSGYKISLQALTKLLDETPKQLKIETMQAICTAFNCKLSDFCEVVSDLELIWDQVIPSSAVKRPSTDDLNQFKNTD
>NC_011738.1|WP_012599793.1|263336_263669_+|type-II-toxin-antitoxin-system-PrlF-family-antitoxin
MTTKQTPCSESTLTKRYQTTIPESIRKVLGLKKHDKICYTILEDGQVTISRAAQTENDPILENFLVFLAQELKKNPQHLQGISANLVSHLKSLVADVDLDLDAPLSDEDE
>NC_011738.1|WP_012599794.1|263671_264190_+|type-II-toxin-antitoxin-system-YhaV-family-toxin
MSEDYQIVINGWSILAHPLFLQQLEELQMQVEDLRQKYPKDYIRKNATKRLAAIVKLAFEVIPQDPTHSNYRQGTTLGDNYKHWFRAKFFQQYRLFFRYHTESKIIVFVWVNDEKSKRAYESNTDAYRIFKKMLESGNPPDDWNDLVKEAQNQIKRLEQIINQDPDPDISKS
>NC_011738.1|WP_012599795.1|264544_265474_+|group-II-intron-reverse-transcriptase/maturase
MTNLIDEFLSLPNFRQAWFKVADNKGCAGIDGETIEHFALNLDFNLTFLLNSVTNSNYIPQPLKQVLIPKSQEKWRELRIPTVRDRIVQQALLNVLYPVMEERFSDASFAYRPNRSYLDAVKRAAYWRDLGYQWVLDADIVEYFDNISHSLLLKEVRKTVDNSGILCLIKAWISAGVSTDKGIIFPEKGVPQGAVISPMLANIYLDEFDHRITQSDLKLVRYADDFLVLSDTEDGIMRAYSQVVQLLHFWGLKLHEEKTQITHFKKGFQFLGHGFLRKAIFPIDDQVKSSKSSLKKKSRQRVRNKRVRI
>NC_011738.1|WP_012599796.1|265617_266622_+|CRISPR-associated-endonuclease-Cas1
MATLYLMEQGTWVQKEQERLIIQVSKTQKMEVLMREVERIMIFGNVQLSTPAINACLKHNILVLFLNQAGQYNGHLWSLGSIHLNNEMVQIKRHQEHEFQVKISKAIVYGKLMNSKRLLMRLNRKRQVPDMDKVIEGINSDILSLESVDNLDQLRGYEGIAAARYFPAFGQLITNAAFSFSLRNRQPPTDPVNSLLSFGYTLLFNNVLSLIISEGLSPYFGNFHYGERDKPYLAFDLMEEFRAIIVDGMVLRVINNGLLTLKDFEPVASNGGVYLTDKGRRIFLKEFESRINKLISHPDIQSPVSYRQTIQLQIRRYKQSLLSDVSYQSFVRDI
>NC_011738.1|WP_012599797.1|266622_266898_+|CRISPR-associated-endonuclease-Cas2
MLVLVVYDIPDNKRRTKLSKFLEGYGERVQWSVFECFLSLEEMRVLYQKVKKRVEPLEDNVRFYWISNEAVSRVLTIGGESPSPPPNYYLI
>NC_011738.1|WP_157867667.1|270936_271074_-|hypothetical-protein
MRKHPRRCAERSLRNSTPQTTAQIIEPEQQLRHIGYFLSQLRNVN
>NC_011738.1|WP_012599799.1|271409_271904_-|hypothetical-protein
MNYQSSIVCDTGPLISLEKIKNGYQFINQLYNQIFVPKIVIEELYRGQFANWDDYKYFYSVGDCLKIVEEELETLPILEILDNGEKQAIQLAYQLQLPLLIEEEKGRKIAQQLGLKFSGIAGQILKANRENLITSEEAKKKLGELLNNGRIGQKMYNELANAIL
>NC_011738.1|WP_012599800.1|271900_272122_-|hypothetical-protein
MKITLDLPDIPDVDQQYINEALVAVLYVQGKLSQSQACQILNLNRRAFEEMLPNYGFSILVDSVDNINIELSA
>NC_011738.1|WP_012599801.1|272235_273852_-|hypothetical-protein
MTMITQTTFVQPNSTLFQDSDDCLSLTEAITEQCQKLTLDIDIQEIVAELTEANQELGKLFSIFSKIGEIEERIRAKCHSITKIEYKNRVWEEQEEYEENLYKSLLQTLFPGSNIGTLLKYCFNLFTWSEASRSHTAASTVQKKLDLLELGQQVGGEQVGQRLISGDKKHPIYIKVLGDTELHSLKVKDLLQIEKRIDETITRVAPSEQLPSITTEVETLEDKLRSPLRWPLSLMTSVKKFIDEVTRKRPVVNKLEALSLDTWNVIGPKMKRVEGQKLKGEYLSIRLEEPNHWVKISNRLSDSNTQLSQVQNRVWELAQEKQEKLKHLQEGLGRPAGKVGKNYCPVPWTSDVLEVLEGLGLETDILALIRYDLGVFVEEYDWQIVVYKYKLDEDAVTSLKRTVDEIALENNRPLDPITGLCRPWKDDLYQVIQKSGRDATKLLKKEVMKYSVEEVEALVQERTFEIKEQLEVTEQRLSEEQKYREQLQSKVNSLESKINTMQQEFEQKIQDMFNQFIAQTANAVNSNGHQLVTVDKLD
>NC_011738.1|WP_012599802.1|274515_275268_-|hypothetical-protein
MSRVKKEDKIIQIREDVSSDTIFNLLFITPSDPTIGIQLANLFNPPQGISQEKIQQILKKNGGDFTFMIQVASSYKEALSLIARNNIFVIESLNSQYSNRIHGIAFELSSNNEEEKNLWDWEKFLDTLISSWGLARCRLLYGFIALVNEQEINDPYVLAKLLRYGVRCLISTPVNPDEVEVKLIDFCKDIYGRSGRFSLETNELETEEGYIQVTEILRYKGPDGNNTGITLPKYKKIISKQGKILYQNET

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011738_1	1.1\|262905\|42\|NC_011738\|PILER-CR,CRT	262905-262946	42	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	262905-262946	0	1.0
NC_011738_1	1.2\|262983\|37\|NC_011738\|PILER-CR,CRT	262983-263019	37	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	262983-263019	0	1.0
NC_011738_1	1.3\|263056\|36\|NC_011738\|PILER-CR,CRT	263056-263091	36	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	263056-263091	0	1.0
NC_011738_1	1.4\|263128\|35\|NC_011738\|PILER-CR,CRT	263128-263162	35	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	263128-263162	0	1.0
NC_011738_1	1.5\|262907\|40\|NC_011738\|CRISPRCasFinder	262907-262946	40	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	262907-262946	0	1.0
NC_011738_1	1.6\|262985\|35\|NC_011738\|CRISPRCasFinder	262985-263019	35	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	262985-263019	0	1.0
NC_011738_1	1.7\|263058\|34\|NC_011738\|CRISPRCasFinder	263058-263091	34	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	263058-263091	0	1.0
NC_011738_1	1.8\|263130\|33\|NC_011738\|CRISPRCasFinder	263130-263162	33	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	263130-263162	0	1.0
NC_011738_1	1.9\|263199\|40\|NC_011738\|CRT	263199-263238	40	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	263199-263238	0	1.0
NC_011738_1	1.4\|263128\|35\|NC_011738\|PILER-CR,CRT	263128-263162	35	MH363700	Vibrio phage VP-1, complete genome	12039-12073	8	0.771
NC_011738_1	1.4\|263128\|35\|NC_011738\|PILER-CR,CRT	263128-263162	35	NC_048765	Vibrio phage VAP7, complete genome	41369-41403	8	0.771
NC_011738_1	1.8\|263130\|33\|NC_011738\|CRISPRCasFinder	263130-263162	33	NZ_CP022700	Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence	118400-118432	8	0.758
NC_011738_1	1.8\|263130\|33\|NC_011738\|CRISPRCasFinder	263130-263162	33	MH363700	Vibrio phage VP-1, complete genome	12041-12073	8	0.758
NC_011738_1	1.8\|263130\|33\|NC_011738\|CRISPRCasFinder	263130-263162	33	NC_048765	Vibrio phage VAP7, complete genome	41371-41403	8	0.758
NC_011738_1	1.4\|263128\|35\|NC_011738\|PILER-CR,CRT	263128-263162	35	NZ_CP022700	Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence	118398-118432	9	0.743

1. spacer 1.1|262905|42|NC_011738|PILER-CR,CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

gactctttttggagaaagcgcgatcggcaaatctctcccgaa	CRISPR spacer
gactctttttggagaaagcgcgatcggcaaatctctcccgaa	Protospacer
******************************************

2. spacer 1.2|262983|37|NC_011738|PILER-CR,CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

gatcctcccctcgcttcgggttagcaatacttgaagc	CRISPR spacer
gatcctcccctcgcttcgggttagcaatacttgaagc	Protospacer
*************************************

3. spacer 1.3|263056|36|NC_011738|PILER-CR,CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

gagtcgaacttaaaaatcattccatcgagagtaatc	CRISPR spacer
gagtcgaacttaaaaatcattccatcgagagtaatc	Protospacer
************************************

4. spacer 1.4|263128|35|NC_011738|PILER-CR,CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

atttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
atttttttggtcttctttgtatttgatgtcctcaa	Protospacer
***********************************

5. spacer 1.5|262907|40|NC_011738|CRISPRCasFinder matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

ctctttttggagaaagcgcgatcggcaaatctctcccgaa	CRISPR spacer
ctctttttggagaaagcgcgatcggcaaatctctcccgaa	Protospacer
****************************************

6. spacer 1.6|262985|35|NC_011738|CRISPRCasFinder matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

tcctcccctcgcttcgggttagcaatacttgaagc	CRISPR spacer
tcctcccctcgcttcgggttagcaatacttgaagc	Protospacer
***********************************

7. spacer 1.7|263058|34|NC_011738|CRISPRCasFinder matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

gtcgaacttaaaaatcattccatcgagagtaatc	CRISPR spacer
gtcgaacttaaaaatcattccatcgagagtaatc	Protospacer
**********************************

8. spacer 1.8|263130|33|NC_011738|CRISPRCasFinder matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

ttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
ttttttggtcttctttgtatttgatgtcctcaa	Protospacer
*********************************

9. spacer 1.9|263199|40|NC_011738|CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 0, identity: 1.0

cagaaccaatttcttatctagattttcaatggcagttttg	CRISPR spacer
cagaaccaatttcttatctagattttcaatggcagttttg	Protospacer
****************************************

10. spacer 1.4|263128|35|NC_011738|PILER-CR,CRT matches to MH363700 (Vibrio phage VP-1, complete genome) position: , mismatch: 8, identity: 0.771

----atttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
caggattgct----tcttctttgtatttgaagttctcaa	Protospacer
    *** .*    **************** **.*****

11. spacer 1.4|263128|35|NC_011738|PILER-CR,CRT matches to NC_048765 (Vibrio phage VAP7, complete genome) position: , mismatch: 8, identity: 0.771

----atttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
caggattgct----tcttctttgtatttgaagttctcaa	Protospacer
    *** .*    **************** **.*****

12. spacer 1.8|263130|33|NC_011738|CRISPRCasFinder matches to NZ_CP022700 (Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence) position: , mismatch: 8, identity: 0.758

ttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
atttttgggctactttgtatttgatgccatgtc	Protospacer
 ******* ** **************.* *

13. spacer 1.8|263130|33|NC_011738|CRISPRCasFinder matches to MH363700 (Vibrio phage VP-1, complete genome) position: , mismatch: 8, identity: 0.758

ttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
ggattgcttcttctttgtatttgaagttctcaa	Protospacer
   **   **************** **.*****

14. spacer 1.8|263130|33|NC_011738|CRISPRCasFinder matches to NC_048765 (Vibrio phage VAP7, complete genome) position: , mismatch: 8, identity: 0.758

ttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
ggattgcttcttctttgtatttgaagttctcaa	Protospacer
   **   **************** **.*****

15. spacer 1.4|263128|35|NC_011738|PILER-CR,CRT matches to NZ_CP022700 (Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence) position: , mismatch: 9, identity: 0.743

atttttttggtcttctttgtatttgatgtcctcaa	CRISPR spacer
ctatttttgggctactttgtatttgatgccatgtc	Protospacer
 * ******* ** **************.* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6213 : 53209

Virus_Rctr85(25.0%)

integrase,transposase

attL 5980:6039|attR 33790:35326

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5980:6039	attL	NA	NA	NA	NA
WP_012599486.1\|6213_7347_-\|transposase	ISAs1-like element ISCysp8 family transposase	NA	NA	NA	NA
WP_012599622.1\|7517_8096_-\|integrase	integrase/recombinase	A0A1P8DJ76	Virus_Rctr85	1.2e-19	39.5
WP_157867669.1\|8410_11818_-	DUF3854 domain-containing protein	A0A2D2W6Z8	Pectobacterium_phage	4.0e-06	31.8
WP_157867658.1\|11973_12189_+	hypothetical protein	NA	NA	NA	NA
WP_012599626.1\|12919_13846_-	sigma-70 family RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	4.6e-34	35.4
WP_012599628.1\|15967_16690_-	hypothetical protein	NA	NA	NA	NA
WP_012599629.1\|16783_17083_+	hypothetical protein	NA	NA	NA	NA
WP_041238492.1\|17165_18725_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_012599631.1\|18721_21190_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_012599632.1\|21419_22703_+	sulfotransferase	NA	NA	NA	NA
WP_012599633.1\|22742_24920_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012599634.1\|24931_25534_+	hypothetical protein	NA	NA	NA	NA
WP_012599635.1\|25502_27563_+	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_012599636.1\|27887_28112_-	hypothetical protein	NA	NA	NA	NA
WP_012599637.1\|28140_28665_+	hypothetical protein	NA	NA	NA	NA
WP_012599486.1\|34023_35157_-\|transposase	ISAs1-like element ISCysp8 family transposase	NA	NA	NA	NA
WP_157867670.1\|35303_36068_+\|transposase	IS4 family transposase	NA	NA	NA	NA
33790:35326	attR	NA	NA	NA	NA
WP_157867659.1\|35934_36201_+	hypothetical protein	NA	NA	NA	NA
WP_012599638.1\|36314_36698_+	hypothetical protein	NA	NA	NA	NA
WP_083775387.1\|36764_37427_+	type III-B CRISPR module RAMP protein Cmr4	NA	NA	NA	NA
WP_012599639.1\|37442_37835_+	hypothetical protein	NA	NA	NA	NA
WP_012599641.1\|38840_39674_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_041238520.1\|39674_39986_-	hypothetical protein	NA	NA	NA	NA
WP_012599643.1\|40025_40241_+	hypothetical protein	NA	NA	NA	NA
WP_157867660.1\|40285_40702_-	hypothetical protein	NA	NA	NA	NA
WP_157867661.1\|44112_44646_-	hypothetical protein	NA	NA	NA	NA
WP_015955833.1\|44922_45744_+\|transposase	IS5-like element ISCysp19 family transposase	NA	NA	NA	NA
WP_012599645.1\|46849_47146_+	hypothetical protein	NA	NA	NA	NA
WP_012599646.1\|47451_48840_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.0e-45	37.5
WP_012599647.1\|48855_49815_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_012599648.1\|49911_50424_-	PIN domain-containing protein	NA	NA	NA	NA
WP_012599649.1\|50416_50764_-	hypothetical protein	NA	NA	NA	NA
WP_157867671.1\|51085_51751_+	response regulator	NA	NA	NA	NA
WP_012599651.1\|52027_53209_-\|transposase	ISAs1-like element ISCysp7 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

224469 : 257116

Salmon_gill_poxvirus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015955833.1\|224469_225291_+\|transposase	IS5-like element ISCysp19 family transposase	NA	NA	NA	NA
WP_012599763.1\|225543_226656_+	hypothetical protein	NA	NA	NA	NA
WP_012599486.1\|227601_228735_+\|transposase	ISAs1-like element ISCysp8 family transposase	NA	NA	NA	NA
WP_049858586.1\|228849_229227_+	hypothetical protein	NA	NA	NA	NA
WP_157867459.1\|229214_229787_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012599764.1\|230031_230274_+	hypothetical protein	NA	NA	NA	NA
WP_012599765.1\|230342_232733_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012599766.1\|232785_233445_+	DUF928 domain-containing protein	NA	NA	NA	NA
WP_012599767.1\|233593_235588_+	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_012599768.1\|235695_236025_-	hypothetical protein	NA	NA	NA	NA
WP_012599769.1\|236050_236491_-	hypothetical protein	NA	NA	NA	NA
WP_012599770.1\|236669_237524_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_157867666.1\|237727_237943_-	hypothetical protein	NA	NA	NA	NA
WP_012599771.1\|237996_238506_-	hypothetical protein	NA	NA	NA	NA
WP_157867463.1\|239328_240151_-\|transposase	IS5-like element ISCysp19 family transposase	NA	NA	NA	NA
WP_012599773.1\|240255_240426_-	hypothetical protein	NA	NA	NA	NA
WP_012599774.1\|241268_242966_+	solute carrier 26 family protein	NA	NA	NA	NA
WP_012599775.1\|244295_245450_-	serine/threonine protein kinase	A0A0H4Y184	Salmon_gill_poxvirus	2.9e-17	32.8
WP_012599776.1\|246500_246791_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_012599777.1\|246780_247125_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_012599778.1\|247442_247769_+	hypothetical protein	NA	NA	NA	NA
WP_083775390.1\|249103_250072_+	hypothetical protein	NA	NA	NA	NA
WP_012599780.1\|250068_250851_+	hypothetical protein	NA	NA	NA	NA
WP_012599781.1\|250892_251831_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.4e-09	44.2
WP_012599782.1\|251832_252591_-	ParA family protein	Q8JL10	Natrialba_phage	4.7e-16	32.4
WP_012599783.1\|252601_252841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012599785.1\|254243_254873_+	uracil-DNA glycosylase	S5M974	Bacillus_phage	1.8e-21	35.5
WP_012599786.1\|254893_255118_+	hypothetical protein	NA	NA	NA	NA
WP_012599787.1\|255130_255487_+	hypothetical protein	NA	NA	NA	NA
WP_012599486.1\|255982_257116_-\|transposase	ISAs1-like element ISCysp8 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_011737

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_011737_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011737_1

168133-169237

Unclear

N:A

Consensus_repeat	Method
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	PILER-CR
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CRISPRCasFinder
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CRT

15 spacers

cas2,cas1,cas5,cas7,cas8b3,cas3,cas6

The CRISPR arrays of NC_011737_1

>merge|NC_011737|1|168133-169237|PILER-CR,CRISPRCasFinder,CRT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGCCCATAAAAAAGACAATAAAAAAATAGAGAAATTTGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGAAGCTAAAAAGCTTCTGATAAAGGGCTTTAGTTTCCTGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGTCGGTGGCATCAGCATAAAATCATGTCTGATTATGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGAATTGCTCCGAGCAATTCAAATCTAAAGTAAGGGTGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGCTTACCAGCAAGTAAATCTCATCGTCATTATTTAGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGATAGCATTGGAGTAAGAGGAACTTTTTCCATTAAGGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGTTTCAAGTGCCCAAACTTCACGGTATTTGTCAGTATTGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGCTATTGCTTCCCCCCATTTGTCTGCGAATATTTCGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGAGAAATCCAAGTTTCAGAGAAATATAAGTAGTCATGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGCTTTCAATTTCCTTGGGGTTAATCGTAGGATTGTGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGTTAAGTTAATTTTTGAGAATAATTTAAAGATTGGTATGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGCGTGGGCTTCTAGTAAAATTTCGCCAGATTGTATCTGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGGATTGTATATTGTTTGTGTTGTACCGTTTTTATTAGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGAACACAAGATTTCAGGGGAACGACCCACAACAATAAGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAGTCTTCAGAGAGTGCATCAAGCACCTCCACAGCATTGTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG

>NC_011737|1|1|168133-169237|PILER-CR
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CCCATAAAAAAGACAATAAAAAAATAGAGAAATTT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AAGCTAAAAAGCTTCTGATAAAGGGCTTTAGTTTCCT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TCGGTGGCATCAGCATAAAATCATGTCTGATTAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AATTGCTCCGAGCAATTCAAATCTAAAGTAAGGGT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTTACCAGCAAGTAAATCTCATCGTCATTATTTA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	ATAGCATTGGAGTAAGAGGAACTTTTTCCATTAAG
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TTTCAAGTGCCCAAACTTCACGGTATTTGTCAGTATT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTATTGCTTCCCCCCATTTGTCTGCGAATATTTC
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AGAAATCCAAGTTTCAGAGAAATATAAGTAGTCAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTTTCAATTTCCTTGGGGTTAATCGTAGGATTGT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TTAAGTTAATTTTTGAGAATAATTTAAAGATTGGTAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CGTGGGCTTCTAGTAAAATTTCGCCAGATTGTATCT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	GATTGTATATTGTTTGTGTTGTACCGTTTTTATTA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AACACAAGATTTCAGGGGAACGACCCACAACAATAA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TCTTCAGAGAGTGCATCAAGCACCTCCACAGCATT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG

>NC_011737|1|1|168133-169237|CRISPRCasFinder
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CCCATAAAAAAGACAATAAAAAAATAGAGAAATTT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AAGCTAAAAAGCTTCTGATAAAGGGCTTTAGTTTCCT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TCGGTGGCATCAGCATAAAATCATGTCTGATTAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AATTGCTCCGAGCAATTCAAATCTAAAGTAAGGGT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTTACCAGCAAGTAAATCTCATCGTCATTATTTA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	ATAGCATTGGAGTAAGAGGAACTTTTTCCATTAAG
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TTTCAAGTGCCCAAACTTCACGGTATTTGTCAGTATT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTATTGCTTCCCCCCATTTGTCTGCGAATATTTC
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AGAAATCCAAGTTTCAGAGAAATATAAGTAGTCAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTTTCAATTTCCTTGGGGTTAATCGTAGGATTGT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TTAAGTTAATTTTTGAGAATAATTTAAAGATTGGTAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CGTGGGCTTCTAGTAAAATTTCGCCAGATTGTATCT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	GATTGTATATTGTTTGTGTTGTACCGTTTTTATTA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AACACAAGATTTCAGGGGAACGACCCACAACAATAA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TCTTCAGAGAGTGCATCAAGCACCTCCACAGCATT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG

>NC_011737|1|1|168133-169237|CRT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CCCATAAAAAAGACAATAAAAAAATAGAGAAATTT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AAGCTAAAAAGCTTCTGATAAAGGGCTTTAGTTTCCT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TCGGTGGCATCAGCATAAAATCATGTCTGATTAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AATTGCTCCGAGCAATTCAAATCTAAAGTAAGGGT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTTACCAGCAAGTAAATCTCATCGTCATTATTTA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	ATAGCATTGGAGTAAGAGGAACTTTTTCCATTAAG
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TTTCAAGTGCCCAAACTTCACGGTATTTGTCAGTATT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTATTGCTTCCCCCCATTTGTCTGCGAATATTTC
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AGAAATCCAAGTTTCAGAGAAATATAAGTAGTCAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CTTTCAATTTCCTTGGGGTTAATCGTAGGATTGT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TTAAGTTAATTTTTGAGAATAATTTAAAGATTGGTAT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	CGTGGGCTTCTAGTAAAATTTCGCCAGATTGTATCT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	GATTGTATATTGTTTGTGTTGTACCGTTTTTATTA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	AACACAAGATTTCAGGGGAACGACCCACAACAATAA
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG	TCTTCAGAGAGTGCATCAAGCACCTCCACAGCATT
GTGATCAACGCCTTTCGGCATCAAAGGTTAAAGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011737.1\|WP_012599594.1\|174745_175387_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011737.1\|WP_012599474.1\|169968_171132_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_011737.1\|WP_041238577.1\|166193_166493_+\|hypothetical-protein	unknown	unknown	unknown
NC_011737.1\|WP_012599583.1\|160314_161673_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|237862
NC_011737.1\|WP_012599592.1\|172654_172948_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_011737.1\|WP_012599600.1\|182030_182552_-\|hypothetical-protein	unknown	unknown	unknown
NC_011737.1\|WP_012599596.1\|176218_177244_-\|DevR-family-CRISPR-associated-autoregulator	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_011737.1\|WP_012599593.1\|172955_174632_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NC_011737.1\|WP_012599595.1\|175559_176222_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NC_011737.1\|WP_012599585.1\|162671_164483_+\|DNA-directed-DNA-polymerase-B	unknown	unknown	gnl\|CDD\|223494
NC_011737.1\|WP_012599587.1\|165240_166197_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|180982
NC_011737.1\|WP_012599599.1\|181282_181927_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NC_011737.1\|WP_012599584.1\|161742_162345_+\|hypothetical-protein	unknown	unknown	unknown
NC_011737.1\|WP_012599590.1\|166892_167813_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236011
NC_011737.1\|WP_012599582.1\|158803_160243_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|238082
NC_011737.1\|WP_012599586.1\|165012_165225_+\|hypothetical-protein	unknown	unknown	unknown
NC_011737.1\|WP_012599598.1\|178802_181286_-\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
NC_011737.1\|WP_012599589.1\|166523_166853_+\|hypothetical-protein	unknown	unknown	unknown
NC_011737.1\|WP_012599597.1\|177243_178812_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NC_011737.1\|WP_041238576.1\|164489_165011_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|100107

Protein	Function_ID	Function_description	E-value
NC_011737.1\|WP_012599594.1\|174745_175387_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.46696e-23
NC_011737.1\|WP_012599474.1\|169968_171132_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.00411865
NC_011737.1\|WP_012599583.1\|160314_161673_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|237862	PRK14948, PRK14948, DNA polymerase III subunit gamma/tau.	1.74086e-163
NC_011737.1\|WP_012599592.1\|172654_172948_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	4.08894e-17
NC_011737.1\|WP_012599596.1\|176218_177244_-\|DevR-family-CRISPR-associated-autoregulator	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	3.72141e-26
NC_011737.1\|WP_012599593.1\|172955_174632_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NC_011737.1\|WP_012599595.1\|175559_176222_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.70843e-57
NC_011737.1\|WP_012599585.1\|162671_164483_+\|DNA-directed-DNA-polymerase-B	gnl\|CDD\|223494	COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair].	1.55931e-47
NC_011737.1\|WP_012599587.1\|165240_166197_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|180982	PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.	2.61988e-96
NC_011737.1\|WP_012599599.1\|181282_181927_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	5.9749e-98
NC_011737.1\|WP_012599590.1\|166892_167813_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236011	PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated.	2.61163e-81
NC_011737.1\|WP_012599582.1\|158803_160243_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	4.34728e-85
NC_011737.1\|WP_012599598.1\|178802_181286_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.29185e-42
NC_011737.1\|WP_012599597.1\|177243_178812_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	5.91893e-27
NC_011737.1\|WP_041238576.1\|164489_165011_+\|SAM-dependent-methyltransferase	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	0.00123776

>NC_011737.1|WP_012599590.1|166892_167813_+|DNA-polymerase-III-subunit-delta'
MTIKNLILPITSLDLLNQIKGQKVAHTLFRHLFLSPYIPLAPAYLFTGIEGIGKITFAKLLAQCILNTDNITNYPNILWIEPTYLQQGELISLSIAKRENLEFKIAPIIRIEQVKQIIQFISNSPISNERLLVIIEKADCLNPIAANALLKSLEEPGKATFILTSSNPEKLLATVISRCQIVPFFPLNDSNIREILNKCGYADISNEVIELAQGSPGKAIIYHQLIDSIPDELLNCPKIGKVSNALQLAKEMTKYSLEQQLLLADYWQYKQSDNREVVQLMETLKSQLFKANHHLVWEVNLIRLTQ
>NC_011737.1|WP_012599589.1|166523_166853_+|hypothetical-protein
MDKILRFKAIAFSIRDIKIINLTEGEKQILIASTNTEFGSALEDKFPWTWSVIDNSGLEPKIARGVISSLIKKGLVHIVDYPDRRNPDDFIFSLSDTGKKITQQLLKDI
>NC_011737.1|WP_041238577.1|166193_166493_+|hypothetical-protein
MKDNTLVILVIKAIASTKNFDSFGEIMSYVVIQETAQEGYYYLDNNHKFSPFVEEAKQFEFSEEAEQQAEYWNKYWQENKHPYFVGKMSGNFVIVILPY
>NC_011737.1|WP_012599587.1|165240_166197_+|DNA-polymerase-III-subunit-delta
MKIYIFHGNDDYLISLQIEEIKSKVLSPAWVNFNFTTYPPGVNSIEQGCNDLTTQPWGEGDRLILLKDSSWLGAMDNALLNTIKSAISTAPFSSHLILTTPKLDKRLKSVKYLISIATVIKEFALMMPWDDKGIANQIRQAAASLDITLTPTALNTLAESIGNNTRLLYQELEKLKIYCPVSPIQATDIKNLVEYSTSNSLSLAKFLLQKDIVNVHQTLNELIHSGENYLKILSTLTTCFRQWLTVKALIDEGVNDNQLIASAANIGNPARIYYLRKEVANISLPKFIEIMGILLETEIHLKQSNTSAFTPQMLKICS
>NC_011737.1|WP_012599586.1|165012_165225_+|hypothetical-protein
MKFKQAVEESQKRKIKLEKIDGKTVLYGNYKTGYLATDLETNKTHRWAKLDDYILNVLELGRDIDGFARR
>NC_011737.1|WP_041238576.1|164489_165011_+|SAM-dependent-methyltransferase
MKHFPFDYFPTPTWVSSFLVKQVNIKPSDVIIESSAGTGELINSIKQAGGKNILSFEIVPQFQVTLAQQGILVVSDNFLTYPNLSSSANVIIQNPPFSLQLSFIYKAYQCLKKDGQLVSLMSNTPWRFNRPSYQRFKGWCERVNAKVVELPYGLFLNSTRPTSVNCYCLKIIK
>NC_011737.1|WP_012599585.1|162671_164483_+|DNA-directed-DNA-polymerase-B
MLFKPNEKRNSILKTFESIIIDESQLDLKSEWLRMIPDYNPPYSITPYGEARSLTVDIETLGLNSISDRILAIGVMESDGKSHLFIDSDERIILVNFLSFLQNYQPEMLFGYNQITFDLPFIKQRAELYGLNTPYRIENYTRRIATAQVFGKPIEFKPINYRGVGVIDLYHQTLSWDFVNRKLNRYDLETVALEMKLRDSPRLELSYHQIVDNWKNGNIEAIAQYLTYDLEDTLNIANYLIPAIYYQQLFLPLSVQELSILGNGKKWEFILEKLYPTVPLPEPDCKLNFDGGMTWAEAGLYNNVAKIDVSSLYPSLMLRYGITSRKDTDYKMLGVLRYLTRERLRLKDLAKTGDEMANQQQGALKILINSAFGFLGTAGCAYNDFEGAALITAYGRGILKLMMEVAKTERATIATCDTDGLILEHSNPQHIYECISKALPTGINIELEWVADGCYVPGKDGEGLRKNYLVFKNGQCIIKKGQYRKRDRTILEREFPIDYLLNYLQSPEDAERFYKSLKSQLLKGEYEIDKLLIRRKIRKNEKALLHLGNTDEEVTYWEQDDGTKGNTRPYNRYYYTNLVEEMKQKILKDIQPFQSTSVQLSLF
>NC_011737.1|WP_012599584.1|161742_162345_+|hypothetical-protein
MLCQLPLTLPDVFYQAALINAPRRYVAIYYQRTKATWDAGDWGATFSYYALYRPLISHFVVSYYLAIAEADLGSDDTNATHCLLIDRKTNIVYLGSWRNVHLFVKDNQEKLKVKGFTLSEDEPVTRQGLFEFLGGAFGGGYSEKQQQETKELIEHLDSCVTEEIAKDFVNWAENAHSFAPMLIAKAFNSYYNRISQADNS
>NC_011737.1|WP_012599583.1|160314_161673_+|DNA-polymerase-III-subunit-gamma/tau
MNYQPFHHKYRPQTLNDLIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAKSLNCVKDNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVSSTQFAPIGRRYKIWIIDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKRFNNDVIVNQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQVSLLSDNVTPVEVHQLLGTISEDNLFELLNAIALSKTEPIIRIIKQLYADGKDPLVILQQLLEFYTNALITLENPKSPLNTLTSTTTQRIKELALNSNTVLNHQQHLRSCETQIKFSRLPRVMLEVAILGLLVQPTEVKIPLSSNGTKSSPKTTVNSELIWTQVINLQTPTIKALLNQQTKLIDYDGETATISTPNEIFRQKVEANRFPIKMGFQKVTGKMIDIAIN
>NC_011737.1|WP_012599582.1|158803_160243_+|DNA-polymerase-III-subunit-beta
MRLTINQSDLSTHLEKVKPIIPNRPTHPILGNFVLQATEGQLTISAFNLSLGVKTSLKAEVSGLGTITVPAKLLSGLIASLPNQSLTLEVDENKEENNDILWIKCSESKYQIRYLDVDEYPDIPSLDESETISIKMKTFIELLNPVLPTYSEDETKQVLVGVHLVGKNNKLELATTDGHRLSVTGALLESDSENPVDYKEMDLTIRGKDLEYLYKNIKDLDPTEELKISWNKELVKFNLTSSVITTRLLQGVYPNYNELIPPQFKGQLTFIGSEMIEAVKRLLLLNPDKNIIVIEANKNLQTLTVTTFDTEVGQGSETIHAEFALNLKMGVNGKYLIEAIKALDAKSLTMNINTPTSPAVLVPSECTLARCLVLIMPFTIKGSDMYVEDINYKDKSTTNNPSLPDDNIENPQENDNNDEPIVEEDLPSEISVVAHDVPVLPETSEPQKIAESIQDTPVEESQPATKKKNSKRKKSVAHH
>NC_011737.1|WP_012599474.1|169968_171132_-|IS4-family-transposase
MNLRSYYQDYLKNSLTKSELLTLQLLIWLLQVHKQVKIERLGACLPIPILYESRRRKIQRFLKSKKLSLSLFWFPLIKLIIEQEFKGQERLVLVLDRTQWKSNNIIMISVIWRKRALPIYWLILNKKGRSSLSEQQAIIRPILKLLSDWEIVILGDREFHGIELAYWLKQQDKKRKNPIYFAFREKGDVNFKKGKKGYQTMKELCKDPGFKAFYSDVEVTKKKGFGKFNLGFYWKRNYKNYKEKQPWFILTNLPSLNETIKYYRKRSGIEAMFKDCKTGGYNLEGSQANQVRLTNLILLIAIAYTNSALKGKSIKNQGHQKYITRLREARRKNKRHSDFWVGLYGDSWIFAVEFCFHFIQELMALNKNKLTFYQKGMKVYSKISAIS
>NC_011737.1|WP_012599592.1|172654_172948_-|CRISPR-associated-endonuclease-Cas2
MAELKHWYIICYDIRCPKRWRKAYKLLEGYGDRLQYSIFRCWLSQRMREKLRWDLEKILTLEDDLILIRLSGQCVKDLPKYNRPNTWLLNEKGFRVL
>NC_011737.1|WP_012599593.1|172955_174632_-|type-I-MYXAN-CRISPR-associated-endonuclease-Cas4/Cas1
MQTTDLDLETLAEPMGDTMRVSALHAFAYCPRLFYLEEVEELYTQDAAVFAGRRLHEEIDKKEDEEWEDLYLEDEHLGLRGRVDALRTRDGQTIPYEHKRGRCYRDEKKQPQAWDSDRLQILAYCCLIEAALGITVPEGRIRYHADNVLVHVPFDETGRQWVKDSIRQARELRKSPYRPAVIDNEHLCSRCSLSPVCLPEEARLAHNKEWHPVRLFPVDDEREVIHVLEPGTRVGRTGEQLKISRPNQPDEKIAIGQVSQVVLHSFSQISTQAVHFLAYKEVGIHFVSGGGRYIGSIDARSRSIQRRVRQYQALSQPDFCLELARKLVACRGEGQRKFLMRGKRNKKGDSLALEKTIAQMKAVLKQVPQIQSLDSLLGIEGNLAALYFGALSNLLAENAPESLLFSGRNRRPPKDRFNALLSFGYSLLIKDVMNAILAVGLEPALGFYHQPRTQAPPLALDLMEIFRVPLVDMPVVTSINRSQWDIQADFDVRGQQVWLSDSGRRKFINLYEQRKAETWKHPVTGYSLTYRRLLELEVRLLEKEWSGEGGLFGQLIVR
>NC_011737.1|WP_012599594.1|174745_175387_-|Uma2-family-endonuclease
MSYSTLIVTNTWIPAEWEAFCSIIEDPVYEKAKAYYYHHHMRLEMSPVGFDHSTNHSIIIVAINLFCILNNIPFQLADNCSYRQTGIKECQPDISVYVAEQANIIPQGTNIVNIDQYPPPDLVVEVAKTSLLDDLGTKRSLYETLGVKEYWIVDVDNTAIIAYKMENKGSYQIQCSQVFLGLDISILEEALRQSRQSDQSAVGRWLMTQFQPS
>NC_011737.1|WP_012599595.1|175559_176222_-|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MIALYVDVPYASFRKSYARSLAETYPFPPPATVYGMLLSLVGEWFRSRHTGVELAFAYKKRPKVATTLRKLSRYKYGVSSKQKTHGNAPDFIETLCDIEFICWINSSNELQNPTLETRIINALEYPERINRKGVVALGLNDDAVNDIALLKFNQFQESEHCQNTWYWLIPCDNGNIELPLWVDHIGSIDTRWQRYRFDSNPSLVTSEPSFEKFVPILDPR
>NC_011737.1|WP_012599596.1|176218_177244_-|DevR-family-CRISPR-associated-autoregulator
MADYLYGTSLTNEAVAANNRGDNIGNTTTLQKIFHQDDVHTSVSAETIRFSWRYRFQLENINLVNRTFDYEPQTGKLKLLYKDEKVSYWNDPNRQIVYIDDDLMGFMDAEAASKEKEEMEEEEQEDSTAKKKSRSKKAKGKVTLRPSPLAVGRAVSLRPYRGELSFNCVSGEKQKGELSLYSAEMHTTEYQYSFGLNLGDVVKKEHIKNLIDAIIDPPPVAGNHARFAYDFSPASIIFRLTNAHSSRIQNCFEHDEENRTYTIEKLIRKVKSGDIPADELIIGGDLFYTEEGEQLREKYQVTMFEGVYAAANEVLTRIANLGGDYRVVKPQTETETQETNQ
>NC_011737.1|WP_012599597.1|177243_178812_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MALKYRLFNPNYTICHRGAMGGLAATIKAWGDNLPEGIQAQYDAETITIDWDETLTEQEALEKILAASFKLTEDKLIDLPGQFIGEDSPDLRLVIHEALCLTFLQHNKMRPGEKTPRISPWQPVDQEDTEPITYRAINSYAHQKAQGTGLLDKAKEGEIGKFPFTATLPQSVIPGAMTGKKALQAMAEDAILLLYLMVGSVIFLLRPTTYRGKSDKKAREKAQACIVIPNVTNLKDFVDSLEILTATSKNIERFNSTYLGRIVGGAEEAALTFLSNIQADDIANSSGVSGCQVIAMGKVAWDKNQINRSLSIQLRNSYPEMTVFRAAKKYLGQSKWITAANGKRFAIPNSPVPELIAANLASERHWCAYFSDLISKKKDFQQMLFRQGGLHAMAKAVKDEDDQAIIQAFHKAWEMTMGQIGDRSREKNLDFSRLVEVKREKIRNEILRAKTASGLATWFLQFCTDATKGASLLPIRNEADRIRAFIFNARNFERFQNLLLFALLSYANDETNRNNNSEGDKN
>NC_011737.1|WP_012599598.1|178802_181286_-|CRISPR-associated-helicase-Cas3'
MKRLLAKSYDRKKSSEPPDYALLIVHSRDVSTACKALANLGGKIAISNAQISISKLEEFYITLVTNGWMQDTGKASQHFQEMVSGKPEITQLLRHETISGFLFLLVPELSEWIKTLPINPTIAIWGAMGHHRKFDKGTMEKNVEELIIKVEHPDFQTILQEMGSDLEIKQSPPIFSKPLIIGVNKNDICDLPARESLNKIKSQFKELEKKFSSEEDRRFIALIKAFGIAADMAASAIAKKYQSANKYSLQEFVRKTLSEGLKPEDLRKLIHQWAWKEWRKHNQFNTKFEQQNLRKLPPNFKLRKFQKQVGRAKTKLTLAIAGCGSGKSIAAYIWMLLWCKRFQQQGRTNFRVFFCLPTTGTTTEHFKDYALESGISEEQIGLTHSRSFVDLETMAETSDQEEVIKDNDENDPPRVAEAVLKAQRDKIESLALWSTPLVVTTADTILGLMANSRRGIYSIPAIMQSVIVFDEIHAFDEVLLGHLLVFLKNFPNLPVLLMTASLPEQYLQAIEKIRPDLALIPGDSRLEELERYTIDYPTTEEKVWQAVKECLAENGKVLWVRNQVEWANIIYHQAITHAENEPVFANTSINVYHSRLRYKDRSYRHRQVIDDFSKKGQSAFLIATQVAEMSLDLSADLLITDIAPIPSLIQRMGRLNRRATPEKPGNPKSALICALSNEKDVKPYESKDLKMAQQWLDALKLLNKPLSQKDLVKQFKLPNNEPEYNYAKAEERACFFSGLWQTRPGFTRGEGYTIPVILKKDLDVWKKDNPKKEKPDQEWLRRYEVSIPIRQEVLKWEKVSGIRIAPQEFIEYDYNENTKKGTGAKWL
>NC_011737.1|WP_012599599.1|181282_181927_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MLTLKREENLLSATIYVDLNFQVLGNILPADHGYGLYAALTHWNPIIHDLEGLSIQTIAGIPDKQGKIYLTERSRFRIRLPHDQVPLVYGLAGKTLTIGKHTIRLGIPQIYLLQPASKLRSRLVVIKGYQEPKIFLEAVQRQLEKLRINGIVAISTANSKPDRKTIKIKRFTVVGFGLEMSNLSDEDSLLLQEVGLGGKRRMGCGVFVPCQEGL
>NC_011737.1|WP_012599600.1|182030_182552_-|hypothetical-protein
MEKNKHGIWCNIKVLKPLIQLWCVEQQLGCVDHYSFNLKSSLPKWQSTSDAARRLAILGLLSKKIFYVLIQTEKKVLLYKKATQASKTRAEIFNRIIFIMDNKHQPCNDAVKASPTSVHQIDYSEYRRIQEENDALRTENDRLRHLVDPLSEDCCSVEDSLQKEYSKERKMTN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011737_1	1.1\|168169\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168169-168203	35	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168169-168203	0	1.0
NC_011737_1	1.2\|168240\|37\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168240-168276	37	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168240-168276	0	1.0
NC_011737_1	1.3\|168313\|34\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168313-168346	34	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168313-168346	0	1.0
NC_011737_1	1.4\|168383\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168383-168417	35	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168383-168417	0	1.0
NC_011737_1	1.5\|168454\|34\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168454-168487	34	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168454-168487	0	1.0
NC_011737_1	1.6\|168524\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168524-168558	35	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168524-168558	0	1.0
NC_011737_1	1.7\|168595\|37\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168595-168631	37	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168595-168631	0	1.0
NC_011737_1	1.8\|168668\|34\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168668-168701	34	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168668-168701	0	1.0
NC_011737_1	1.9\|168738\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168738-168772	35	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168738-168772	0	1.0
NC_011737_1	1.10\|168809\|34\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168809-168842	34	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168809-168842	0	1.0
NC_011737_1	1.11\|168879\|37\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168879-168915	37	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168879-168915	0	1.0
NC_011737_1	1.12\|168952\|36\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168952-168987	36	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	168952-168987	0	1.0
NC_011737_1	1.13\|169024\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	169024-169058	35	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	169024-169058	0	1.0
NC_011737_1	1.14\|169095\|36\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	169095-169130	36	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	169095-169130	0	1.0
NC_011737_1	1.15\|169167\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	169167-169201	35	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	169167-169201	0	1.0
NC_011737_1	1.5\|168454\|34\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168454-168487	34	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	142854-142887	8	0.765
NC_011737_1	1.1\|168169\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168169-168203	35	NZ_CP019241	Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed1	19534-19568	9	0.743
NC_011737_1	1.1\|168169\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168169-168203	35	NZ_CP015865	Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T plasmid unnamed, complete sequence	4064-4098	9	0.743
NC_011737_1	1.1\|168169\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168169-168203	35	CP009912	Borreliella chilensis strain VA1 plasmid lp54, complete sequence	52643-52677	10	0.714
NC_011737_1	1.1\|168169\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168169-168203	35	CP009912	Borreliella chilensis strain VA1 plasmid lp54, complete sequence	52667-52701	10	0.714
NC_011737_1	1.6\|168524\|35\|NC_011737\|PILER-CR,CRISPRCasFinder,CRT	168524-168558	35	NZ_CP012103	Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence	5884-5918	10	0.714

1. spacer 1.1|168169|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

cccataaaaaagacaataaaaaaatagagaaattt	CRISPR spacer
cccataaaaaagacaataaaaaaatagagaaattt	Protospacer
***********************************

2. spacer 1.2|168240|37|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

aagctaaaaagcttctgataaagggctttagtttcct	CRISPR spacer
aagctaaaaagcttctgataaagggctttagtttcct	Protospacer
*************************************

3. spacer 1.3|168313|34|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

tcggtggcatcagcataaaatcatgtctgattat	CRISPR spacer
tcggtggcatcagcataaaatcatgtctgattat	Protospacer
**********************************

4. spacer 1.4|168383|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

aattgctccgagcaattcaaatctaaagtaagggt	CRISPR spacer
aattgctccgagcaattcaaatctaaagtaagggt	Protospacer
***********************************

5. spacer 1.5|168454|34|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

cttaccagcaagtaaatctcatcgtcattattta	CRISPR spacer
cttaccagcaagtaaatctcatcgtcattattta	Protospacer
**********************************

6. spacer 1.6|168524|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

atagcattggagtaagaggaactttttccattaag	CRISPR spacer
atagcattggagtaagaggaactttttccattaag	Protospacer
***********************************

7. spacer 1.7|168595|37|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

tttcaagtgcccaaacttcacggtatttgtcagtatt	CRISPR spacer
tttcaagtgcccaaacttcacggtatttgtcagtatt	Protospacer
*************************************

8. spacer 1.8|168668|34|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

ctattgcttccccccatttgtctgcgaatatttc	CRISPR spacer
ctattgcttccccccatttgtctgcgaatatttc	Protospacer
**********************************

9. spacer 1.9|168738|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

agaaatccaagtttcagagaaatataagtagtcat	CRISPR spacer
agaaatccaagtttcagagaaatataagtagtcat	Protospacer
***********************************

10. spacer 1.10|168809|34|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

ctttcaatttccttggggttaatcgtaggattgt	CRISPR spacer
ctttcaatttccttggggttaatcgtaggattgt	Protospacer
**********************************

11. spacer 1.11|168879|37|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

ttaagttaatttttgagaataatttaaagattggtat	CRISPR spacer
ttaagttaatttttgagaataatttaaagattggtat	Protospacer
*************************************

12. spacer 1.12|168952|36|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

cgtgggcttctagtaaaatttcgccagattgtatct	CRISPR spacer
cgtgggcttctagtaaaatttcgccagattgtatct	Protospacer
************************************

13. spacer 1.13|169024|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

gattgtatattgtttgtgttgtaccgtttttatta	CRISPR spacer
gattgtatattgtttgtgttgtaccgtttttatta	Protospacer
***********************************

14. spacer 1.14|169095|36|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

aacacaagatttcaggggaacgacccacaacaataa	CRISPR spacer
aacacaagatttcaggggaacgacccacaacaataa	Protospacer
************************************

15. spacer 1.15|169167|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 0, identity: 1.0

tcttcagagagtgcatcaagcacctccacagcatt	CRISPR spacer
tcttcagagagtgcatcaagcacctccacagcatt	Protospacer
***********************************

16. spacer 1.5|168454|34|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.765

cttaccagcaagtaaatctcatcgtcattattta	CRISPR spacer
gttgcacccaagtcaatctgatcgtcattatttt	Protospacer
 **.*   ***** ***** *************

17. spacer 1.1|168169|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019241 (Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed1) position: , mismatch: 9, identity: 0.743

-cccataaaaaagacaataaaaaaatagagaaattt	CRISPR spacer
gtgcgt-ggaacgccaataaaaaaatagagaaatta	Protospacer
 . *.* ..** * *********************

18. spacer 1.1|168169|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015865 (Vibrio campbellii CAIM 519 = NBRC 15631 strain ATCC 25920, CAIM 519T plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

cccataa----aaaagacaataaaaaaatagagaaattt	CRISPR spacer
----tgatatcaaaagacaataaaaatatagaaaaagat	Protospacer
    *.*    *************** *****.***  *

19. spacer 1.1|168169|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to CP009912 (Borreliella chilensis strain VA1 plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.714

cccataaaaaagacaataaaaaaatagagaaattt	CRISPR spacer
tagatgaaaaagacaataaaaaattagatgaaaaa	Protospacer
.  **.***************** **** .**

20. spacer 1.1|168169|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to CP009912 (Borreliella chilensis strain VA1 plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.714

cccataaaaaagacaataaaaaaatagagaaattt	CRISPR spacer
tagatgaaaaagacaataaaaaattagatgaaaaa	Protospacer
.  **.***************** **** .**

21. spacer 1.6|168524|35|NC_011737|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012103 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence) position: , mismatch: 10, identity: 0.714

atagcattggagtaagaggaactttttccattaag	CRISPR spacer
tctctgttggagtaagaggacctgtttccattcat	Protospacer
 .  ..************** ** ******** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5699 : 55683

Salmonella_phage(25.0%)

integrase,transposase,protease

attL 7628:7646|attR 67807:67825

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012599448.1\|5699_8672_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.7e-77	25.9
7628:7646	attL	NA	NA	NA	NA
WP_041238583.1\|8726_9338_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	3.2e-31	38.9
WP_083775393.1\|9667_9856_-	hypothetical protein	NA	NA	NA	NA
WP_012599450.1\|9938_10544_-	hypothetical protein	NA	NA	NA	NA
WP_012599451.1\|10716_11187_+	hypothetical protein	NA	NA	NA	NA
WP_012599452.1\|11284_11779_+	hypothetical protein	NA	NA	NA	NA
WP_157867676.1\|12576_12732_-	hypothetical protein	NA	NA	NA	NA
WP_012599454.1\|12745_13495_-	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_012599455.1\|13583_13943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012599457.1\|14931_17655_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012599458.1\|17657_18386_+	AAA family ATPase	NA	NA	NA	NA
WP_012599459.1\|20809_21052_-	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_012599460.1\|21066_21408_-	hypothetical protein	NA	NA	NA	NA
WP_157867677.1\|21501_21708_-	hypothetical protein	NA	NA	NA	NA
WP_012599461.1\|21773_22082_-	hypothetical protein	NA	NA	NA	NA
WP_012599462.1\|22231_22429_-	hypothetical protein	NA	NA	NA	NA
WP_157867678.1\|22491_22641_-	hypothetical protein	NA	NA	NA	NA
WP_012599463.1\|22898_23366_+	hypothetical protein	NA	NA	NA	NA
WP_012599464.1\|23825_24398_+	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	2.5e-22	37.6
WP_012599465.1\|24793_24988_+	prevent-host-death protein	NA	NA	NA	NA
WP_049858594.1\|28301_28496_-	hypothetical protein	NA	NA	NA	NA
WP_012599469.1\|29149_29380_+	hypothetical protein	NA	NA	NA	NA
WP_012599470.1\|29816_30194_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_049858599.1\|30444_30903_+	hypothetical protein	NA	NA	NA	NA
WP_012599472.1\|30899_31505_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_012599473.1\|31536_31836_-	hypothetical protein	NA	NA	NA	NA
WP_012599474.1\|32099_33263_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012599475.1\|33428_33599_-	hypothetical protein	NA	NA	NA	NA
WP_012599476.1\|33598_33856_-	prevent-host-death family protein	NA	NA	NA	NA
WP_012599477.1\|34348_34837_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012599478.1\|34926_35841_+\|integrase	tyrosine-type recombinase/integrase	A0A2R2ZHE2	Clostridioides_phage	1.4e-06	29.3
WP_012599479.1\|36102_39846_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_012599480.1\|40029_40575_-	hypothetical protein	NA	NA	NA	NA
WP_012599482.1\|41041_41779_-	hypothetical protein	NA	NA	NA	NA
WP_012599483.1\|41824_43066_-	DUF3137 domain-containing protein	NA	NA	NA	NA
WP_012599484.1\|43107_43665_-	LemA family protein	NA	NA	NA	NA
WP_012599485.1\|43773_44004_+	hypothetical protein	NA	NA	NA	NA
WP_012599486.1\|44235_45369_+\|transposase	ISAs1-like element ISCysp8 family transposase	NA	NA	NA	NA
WP_012599487.1\|45554_46310_-	hypothetical protein	NA	NA	NA	NA
WP_157867679.1\|46376_46541_+	hypothetical protein	NA	NA	NA	NA
WP_012599488.1\|46583_47678_-	hypothetical protein	NA	NA	NA	NA
WP_012599489.1\|48146_49127_+	hypothetical protein	NA	NA	NA	NA
WP_012599490.1\|49275_52497_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012599491.1\|52493_54116_+	hypothetical protein	NA	NA	NA	NA
WP_012599492.1\|54213_55683_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
67807:67825	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_011729

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_011729_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_1

7479-7566

Orphan

Consensus_repeat	Method
AAATCTTGCTCAAACTGACGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_1

>merge|NC_011729|1|7479-7566|CRISPRCasFinder
AAATCTTGCTCAAACTGACGTAAGGCGGTGCGTTACATTTCATTAACGCACCCTACAAAAGGGTTAAATCTTGCTCAAACTGACGTAA

>NC_011729|1|1|7479-7566|CRISPRCasFinder
AAATCTTGCTCAAACTGACGTAA	GGCGGTGCGTTACATTTCATTAACGCACCCTACAAAAGGGTT
AAATCTTGCTCAAACTGACGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_041237603.1\|8188_8884_-\|DevA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274374
NC_011729.1\|WP_012597435.1\|10064_11384_-\|ABC-exporter-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|213754
NC_011729.1\|WP_012597438.1\|15436_15844_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_011729.1\|WP_012597429.1\|3713_4229_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NC_011729.1\|WP_012597440.1\|16509_17745_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_011729.1\|WP_012597439.1\|15966_16374_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_011729.1\|WP_012597431.1\|5733_7242_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_011729.1\|WP_012597428.1\|2616_3723_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372979
NC_011729.1\|WP_012597437.1\|14378_15233_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NC_011729.1\|WP_012597430.1\|4802_5540_-\|cyanoexosortase-A	unknown	unknown	gnl\|CDD\|163475
NC_011729.1\|WP_012597427.1\|1605_2505_+\|homogentisate-phytyltransferase	unknown	unknown	gnl\|CDD\|183813
NC_011729.1\|WP_041237892.1\|8910_10062_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NC_011729.1\|WP_012597442.1\|19064_20198_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_011729.1\|WP_012597441.1\|17965_19051_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_011729.1\|WP_012597426.1\|89_1451_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|234667
NC_011729.1\|WP_012597436.1\|11864_14243_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|214361

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_041237603.1\|8188_8884_-\|DevA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	5.26244e-145
NC_011729.1\|WP_012597435.1\|10064_11384_-\|ABC-exporter-membrane-fusion-protein	gnl\|CDD\|213754	TIGR02971, devB-like_secretion_protein, ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.	4.89898e-92
NC_011729.1\|WP_012597438.1\|15436_15844_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	5.25583e-48
NC_011729.1\|WP_012597429.1\|3713_4229_-\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	2.4836e-38
NC_011729.1\|WP_012597440.1\|16509_17745_-\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.20812e-128
NC_011729.1\|WP_012597439.1\|15966_16374_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	8.03475e-46
NC_011729.1\|WP_012597431.1\|5733_7242_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NC_011729.1\|WP_012597428.1\|2616_3723_+\|hypothetical-protein	gnl\|CDD\|372979	pfam14249, Tocopherol_cycl, Tocopherol cyclase. This family contains tocopherol cyclases. These enzymes are involved in the synthesis of tocopherols and tocotrienols (vitamin E).	0
NC_011729.1\|WP_012597437.1\|14378_15233_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	0
NC_011729.1\|WP_012597430.1\|4802_5540_-\|cyanoexosortase-A	gnl\|CDD\|163475	TIGR03763, conserved_hypothetical_protein, cyanoexosortase A. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci and/or different taxonomic lineages. We designate this relatively divergent cyanobacterial type to be type 3. We propose the gene symbol xrtC. This type coexists with a TIGR02602-recognized form in Nostoc sp. PCC 7120. [Protein fate, Protein and peptide secretion and trafficking].	4.40639e-86
NC_011729.1\|WP_012597427.1\|1605_2505_+\|homogentisate-phytyltransferase	gnl\|CDD\|183813	PRK12887, ubiA, tocopherol phytyltransferase; Reviewed.	2.41429e-168
NC_011729.1\|WP_041237892.1\|8910_10062_-\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	0
NC_011729.1\|WP_012597442.1\|19064_20198_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.0011e-104
NC_011729.1\|WP_012597441.1\|17965_19051_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	2.13716e-105
NC_011729.1\|WP_012597426.1\|89_1451_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|234667	PRK00149, dnaA, chromosomal replication initiator protein DnaA.	0
NC_011729.1\|WP_012597436.1\|11864_14243_-\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0

>NC_011729.1|WP_012597431.1|5733_7242_+|UbiD-family-decarboxylase
MARDLRGFIKLLEDRGQLRRIKALVDADLEIAEISNRMLQAAGPALLFENVKGASFPVAVNLMGTVERICWAMNMNHPQELEELGKKLALLQQPKPPKKLSQFVDFGKVLFDVVKAKPGRNFFPPCQQVVIEGDDLDLNTLPLIRPYPGDAGKIITLGLVITKDCETGTPNVGVYRLQLQSKNTMTVHWLSVRGGARHLRKAAEKGKKLEIAIALGVDPLIIMAAATPIPVDLSEWLFAGLYGGSGVQLTRCKTLDLEVPADSEFILEGTITPGEMLPDGPFGDHMGYYGGVEDSPLIRFHCMTHRQDPIYLTTFSGRPPKEEAMMAIALNRIYTPILRQQVSEITDFFLPMEALSYKAAIISIDKAYPGQAKRAALAFWSALPQFTYTKFVIVVDKDINIRDPRQVVWAISSKVDPSRDVFILPETPFDSLDFASQKIGLGGRMGIDATTKIYPETDHQWGEVLESDEDVAAMVSRRWSEYGLEDLNLKEVDANLFGYEIK
>NC_011729.1|WP_012597430.1|4802_5540_-|cyanoexosortase-A
MSGLFLLVVGSIIWDKRNNLKIESSLLFKIIGILLIGCIVINLPLSPQKNKLDPFLRCSPFIFGLSLGLIASGLKGIKLYWRELTILFFLGMPAVIAEWLKFNPSSLTAQFSTFILWCINLNPIREGVHIYLPTGAVEVNKGCSGLEAMTYLLGISVIMLLMFPLRRIYNILVPIVAVSLGFIVNGFRVVLLTLLVASNKMEGFKYWHEGEGSLMVGMVAIGLFVIFYFFLIRFSDVEELEDREA
>NC_011729.1|WP_012597429.1|3713_4229_-|L,D-transpeptidase
MKSLSHNTRSLYWKTIIAGLVLTVTTLGIESIPLPSLAHSQDQITEKIVALKSSQNRWIEINLTTQRLIAWEGEKPVYAVIVSTGKKETPTLTGVFNIQIKRPLDRMIGPDYDVPNVPHAMYYDRGYAIHGAYWHNNFGTPVSHGCTNVAVDHAEWLYNWASVGTPVVIHR
>NC_011729.1|WP_012597428.1|2616_3723_+|hypothetical-protein
MMDKFKENKLQTPHSGYHWDGWTKRFFEGWYFRVTLPDTNDTFAFMYSIEDPIGGQPVSGGAAQILALEDEYLCRTFPDVKKFWASRDYLGLGHWGKTDLRMSPQLLTPTEFNEHIEQGYQVTATFHQGIIKDIGRNKSCRWQYETKPIYGWGNPQKPQQSTAGWLSYFPIFEPGWQILMAHGLASGWIEWNEKMYEFKNAPAYSEKNWGSSFPEKWFWFNCNNFINEPDLALTAGGGKRGVLWWSEEVALICFHYRGKFYEFVPWNSQVSWQIHPWGRWEMQALNEEFEVKLIGTTDLPGTVLRAPTNQGLIFCCRDTTKGQVTLELSKRDGETLLKAKSSACGLEIGGSPWDEPWIVKECAGGCHR
>NC_011729.1|WP_012597427.1|1605_2505_+|homogentisate-phytyltransferase
MSSIYTLWKFARPHTVIGTSLSVFALYLIAIAATNSLINLTNLGQTLGTLIACLCGNVYIVGLNQLFDAEIDKINKPNLPIASGELTQKQGIFIIIITGILSLIISAYLGKWLLITVAVSLLLGTAYSMPPIRLKRFPLLAAFCIFTVRGVVINLGLFLFFSKTLGGQEFLTPSVWTLTLFVLIFTVAIAIFKDVPDMEGDKKYKISTFTLLLGKELVFKIASSVIIICYLGMILAGMFWLPSVNSYFLVFSHVILLALLWLRSQNVDLEKRSGIRSFYQFIWKLFYLEYFFFTAACLL
>NC_011729.1|WP_012597426.1|89_1451_+|chromosomal-replication-initiator-protein-DnaA
MELSPQDLWTQVLERLQSRLPRPAFDTWIGTAKIEQLTPQYLVICAANPFILNHLQKNYLQIIADVVEEILGYSIDIQLTSTQGENIAIVGETQVSAYYPTLSGEHPKPIKLNPKYTFSRFVVGSNNRLAHAATLAVAESPGREFNPLFLCGGVGLGKTHLMQAIAHYRLQMYPDSKVFYVSTEQFTNDLITAIRQDSLQSFREHYRTADILLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKQIPTLEDRLISRFSMGLIADIQVPDLETRMAILQKKAEYENMRLPREVIEYIATHYTSNIRELEGALIRAITYISISGLSMTVENLAPVLNPPVERGEVTPELILNIIAETYKVSVEDLKGNSRRREISLARQIGMYLMRQHTDLSLPRIGEEFGGKDHTTVMYSYDKINQLQKKDLDLSQTLSQLSDRIHLASRTQKTT
>NC_011729.1|WP_041237603.1|8188_8884_-|DevA-family-ABC-transporter-ATP-binding-protein
MNNNPVVDINHLNHYFGEGALKKQILFDIHLTLLPGEVVILKGPSGSGKTTLLTLMGGLRSAQSGSLKVFGKEIVGAKKHKLIQIRRNIGYIFQAHNLLDCLTARQNVQMSLELHRGLGDREIKHRSIAMLESVGLGDRVNYYPRNLSGGQKQRVAIARALVSRPKMVLADEPTASLDSKSGHDVVVLMQKLAKEQGCTILIVTHDNRILDVADRIVELEDGRLKQNQLII
>NC_011729.1|WP_041237892.1|8910_10062_-|FtsX-like-permease-family-protein
MKIPLSWLQLTHEKTRLLVAIAGITFADILMFMQLGFRDALFDSSVKFHKQLETDIVLLNSRSETFVNLKQFSQRRLYTALGVPGVESVTPMYIGFAFWKNPVKQNLKNILVIGFNPEKNVVRLPGVAEKKALLKQQDLVLFDQKSRQEFGPVVQWFNQGKTVTTEVAERKIKIGGLFSLGTSFGADGNLITSDVNFFRLFSNRDRGLIDLGLIQVAPNADVNAVVQAIQKEIAAEDVMVMTKADFIEFEKNYWRTRTTIGFVFAFGTLMGFIVGTVIVYQILYTDVADHLPEYATLKAMGYTDFYLLSVVFQEAIILAIIGFIPGVSAALFMYYRVANATGLPIMMTVSRAITILILTILMCVISGIISVGKLRSADPADIF
>NC_011729.1|WP_012597435.1|10064_11384_-|ABC-exporter-membrane-fusion-protein
MGQATEFKKQILIKDGKRWVIVTCILGVLITAGSTIYGLRQTNLDSQDPPPVVTEPPKISSVTALGRIEPKGEVIKLAPAPNMGGAKVVQLLIEEGDRVQKGQVVAILDNLKQEQTAVNLAQQELKVAQANLDIVKAGAKQGEIEAQRATIQRLQAQLDGEIATHQVTIERLQAELAGEQQEQQATIERLQAELNDAEKDFQRYQKLALDGVISESDLDQRSLNLATARERVAEAKARLKKTSDTLNQRIAEERANFQKQIDTLQKQIDEAKATLDRIAEIRPVDVQKAQAEVDKANAALKQAQADLDLAYVKAPVDGQILKIHSRPGAKVDDDKGIAEIGNTDQMMVIAEVYESDISKVKLGQKALITSENNTFTDKLTGTVTQIGLQIGKKDVLETDPAADVDVRVIEVKILLDPDSSRRVDHLTYAKVVTEIPLEN
>NC_011729.1|WP_012597436.1|11864_14243_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MFEHFSDKAVKAIMFAQEEARRTGHNVVGTEHLLLGVIGEETSLAASVLRDLGINLPQTRRIIEDMTGRGPGYSPANIPFTPKVKRIFEGAFQEARQLGDRVITPVHLLLAITTEKESLAGKILTQQGVDLKKLRTELINKNAEKSAAGATVGATNEPYRFGTPGGRQASLSEFGINLTQQAAEGKLDPVVGRDREVERTIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIVQGDVPPLLHDKQVFSLDLGLLLAGTRFRGEFEERLKGIVEEVRQAGNIILVIDEIHTLVGAGALGGSLDAANMIKPALARGELQCLGTTTLNEYRQYIEKDAALERRFQPVKVGEPSITETIEILHGLRKQYEDHHKVKFSDAALTAAAKLSDRYISDRFLPDKAIDLIDEAGSRMHVQYSQKKKAHPETEAEESPIINPQSLVPVVDEEEIAEIVSSWTGVPVNKVNETESESLIYLEARLHERIIGQNEAVSAVARAVRRARVGMKDPNRPIASFVFAGPTGVGKTELAKALATFLFGAADAMIRLDMSEFMEPHTVSKLIGSPPGYIGYDEGGQLTEAVRRKPYTVILFDEIEKAHPDVFNTLLQLLDDGRLTDAKGRTVDFKNTLIIMTSNIGSKVIEKGGGGLGFAISDDIDESQYNYVRNLVTEEMKNYFRPEFLNRLDEIIVFRQLTKNEVKEIADILLQEIAIQLKEQRDISLDVTEQFKELVVKEGYDPSYGARPLRRAIMRRLEDSLAEAILAGQVRDGDNIIIDADDQGQVRILNSEKAVLHLQPVG
>NC_011729.1|WP_012597437.1|14378_15233_-|formyltetrahydrofolate-deformylase
MNGSTATLLISCPDQKGLVAKIANFIYSNGGNIIHADQHTDFSAGLFLTRLEWQLDGFNLPKPMIEPAFAAIAKPLDAVWSLHFSDVTPRIAIWVTKQNHCLLDLLWRQQAKEIAAEIPLMISNHKQLQPIAEQFGIDFHHIPITKETKLEQEAKQLELLRHYNIDLVVLAKYMQILSPEFVEKFPHVINIHHSFLPAFPGANPYQRAYERGVKIIGATAHYVTADLDEGPIIEQDVERISHRDTVGDLIRKGKDLERMVLARAVRLHLQNRVLVYENKTVVFT
>NC_011729.1|WP_012597438.1|15436_15844_-|DUF29-domain-containing-protein
MPTYEQDFYQWTIEQAQALRERNIKALDWDNLIEEIESLGRDYYKDCFSYAVLIIVHRLYIDYWVAQRERNQFHWQGEIDNWQTLIQNHLTTNIKNKLEKEWDTIYHQARQKFIKKTGIDTLPESCPYTLEEILE
>NC_011729.1|WP_012597439.1|15966_16374_-|DUF29-domain-containing-protein
MSKLNIYDKDFYQWTIEQAKAIDERNLNSLDWENLKEEIEALGRSEYNAVVSLLLKEIEHLLKIDYVPIPECRNKWKAEAAAFKKNIARKITPSMKPKLESQFEGIFQDAAEVVAIEYEIELPQECPYNLEDLLD
>NC_011729.1|WP_012597440.1|16509_17745_-|PDZ-domain-containing-protein
MANTTDVHRSIKSKSSPWKKALTYGSLVILGAGVGVGGSYAFNSPTLSARTTDNPIIAQRQDINQTPGSPQIAVPTNFVTQVVEKVGPAVVRIDAARTVTQQTPEIFNDPFFRQFFGSQIPQTPNRQVQRGTGSGFIISSEGKIITNAHVVDGADRVTVTLKDGRTFTGQVLGTDPLTDIAVVKIEANNLPTAKVGNSDRLQVGEWAIAIGNPLGLDNTVTTGIVSGTGRSSALIGAGDKRLQFIQTDAAINPGNSGGPLLDQNGEVIGVNTAIIQNAQGIGFAIPINKAQEIADQLIAKGKVDHPYLGIQMAQITPDIKQKLQQAKGWRLSEDQGVVIIGIVPNSPAARSGIREGDVITAIGEKSIDNPTEVQQEVDKTQVGSRIPLQISRDGRIINLDVEVGVLPNQVS
>NC_011729.1|WP_012597441.1|17965_19051_-|glycosyltransferase-family-4-protein
MTHNLLVNLSFLLSQPTGLATYAGNLFPYLKSLEPTLLTANKIDNFNCVPVPPNLTQAQGTKGNIQRLLWTEFQLPKLYHHLKTSLLFSPIPEAPIYSNCRFVVTVHDLIPLRFPRRFSALTLYCRYYLPQVLAQAEHIICDSVATKKDLQTFFSLPDTKITPVLLAYDKTHFRPLPKDTQPSTIPYFFYIGRHDPYKNLHRLITAFAKLPNYQDYQLWIAGSSDPRFTPLLKTQTDELGLSEQIKFLDYLPYEQLPQILNQALALVFPSLWEGFGLPVLEAMGCGTPVITSNLSSLPEVAGDAALLVNPYKVEEITAAMEALATDAQLRSRLSQQSLHQASQFSWQKTAQETVEVLTRHW
>NC_011729.1|WP_012597442.1|19064_20198_-|glycosyltransferase-family-4-protein
MLNILIDGTALRPKPSGIGLYVYHLINGLEKLQTEENFNLSVSYQPSVKNWLKGDLSIPEKLQNYSQVHCLPIPVTLSNFLAKYPNPSLAYFEKFLGSPTIVHGPDHVVYPCRNSLKVMTITDLTFIKYPQFVNSIVKTYTERVKQCLKWTDLVITISQSSKQDIIDYLGVKPDKVYVTPLASRYSFQEVTEEQDKPLKPYLLFVSTLEPRKNVKTLILAFNLLKQTYKIEHRLILIGQKGWKYQPIFETLENSPWKHEIDHLDYVSDEKVAWFYRHADVFVYPSIYEGFGLPVLEAMTLGTPVVTSNTSSIPEVTGDAALLVDPNDPHQLAEAIFQIISDHNFRQTLIRKGQERAKLFSWEKTARETFKAYCSLLK

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Crispr_ID: NC_011729_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_2

84037-84437

TypeV

Consensus_repeat	Method
GATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAATGGGAAAAGTTT	PILER-CR

4 spacers

The CRISPR arrays of NC_011729_2

>merge|NC_011729|2|84037-84437|PILER-CR
GATCGCACTCCCTTCAGCCTTTTGAGCTAGTTGTTGGATAATGGGTAAGGTTTCGGGTTCATCGTGCCAATGTTCGGCTAAAGCAGAGATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAATGGGAAAAGTTTCCGGTTCATCAGGCCAATGTTCGGCTAAAACATAGATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAATGGGAAAAGTTTCCGGTTCATCAGGCCAATGTTCGGCTAAAACATAGATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAAAGGGGAAAGTTTGGGGGTCATCGCGCCAATGTTTGGCTAAAGCATCGATCGCACTCCATTCACCCTTTTGAGCTAGTTGTTGGATGATGGGGAAAGTTT

>NC_011729|2|1|84037-84437|PILER-CR
GATCGCACTCCCTTCAGCCTTTTGAGCTAGTTGTTGGATAATGGGTAAGGTTT	CGGGTTCATCGTGCCAATGTTCGGCTAAAGCAGA
GATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAATGGGAAAAGTTT	CCGGTTCATCAGGCCAATGTTCGGCTAAAACATA
GATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAATGGGAAAAGTTT	CCGGTTCATCAGGCCAATGTTCGGCTAAAACATA
GATCGCACTCCATTCACCCTTTTGAGCTTGTTGTTGGATAAAGGGGAAAGTTT	GGGGGTCATCGCGCCAATGTTTGGCTAAAGCATC
GATCGCACTCCATTCACCCTTTTGAGCTAGTTGTTGGATGATGGGGAAAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_041237605.1\|93546_93768_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597492.1\|81942_82635_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
NC_011729.1\|WP_012597497.1\|87567_88995_-\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|274644
NC_011729.1\|WP_012597486.1\|72136_73042_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|178419
NC_011729.1\|WP_012597500.1\|90192_90672_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|238269
NC_011729.1\|WP_012597495.1\|83027_83252_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597502.1\|91652_93152_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NC_011729.1\|WP_157867319.1\|87197_87335_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597506.1\|98062_98953_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_011729.1\|WP_012597490.1\|78750_80103_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376625
NC_011729.1\|WP_012597501.1\|91337_91544_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597505.1\|97304_97970_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|369942
NC_011729.1\|WP_012597493.1\|82655_82847_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597488.1\|74162_75665_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379073
NC_011729.1\|WP_041237604.1\|80235_81939_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_011729.1\|WP_012597489.1\|75661_78454_-\|protein-kinase	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_012597499.1\|89626_90181_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NC_011729.1\|WP_012597494.1\|82843_83008_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597498.1\|89026_89581_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_012597487.1\|73114_73993_-\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012597492.1\|81942_82635_-\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.03012e-14
NC_011729.1\|WP_012597499.1\|89626_90181_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	6.53567e-55
NC_011729.1\|WP_012597500.1\|90192_90672_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|238269	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.	1.37662e-61
NC_011729.1\|WP_012597502.1\|91652_93152_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.5942e-109
NC_011729.1\|WP_012597486.1\|72136_73042_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|178419	PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.	1.29645e-126
NC_011729.1\|WP_012597506.1\|98062_98953_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.03544e-30
NC_011729.1\|WP_012597490.1\|78750_80103_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|376625	pfam01832, Glucosaminidase, Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J that has been shown to hydrolyze peptidoglycan.	5.05236e-06
NC_011729.1\|WP_012597505.1\|97304_97970_-\|calcium-binding-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	1.09734e-16
NC_011729.1\|WP_012597488.1\|74162_75665_+\|hypothetical-protein	gnl\|CDD\|379073	pfam13205, Big_5, Bacterial Ig-like domain.	6.3714e-05
NC_011729.1\|WP_041237604.1\|80235_81939_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NC_011729.1\|WP_012597489.1\|75661_78454_-\|protein-kinase	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	8.03132e-100
NC_011729.1\|WP_012597497.1\|87567_88995_-\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|274644	TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_011729.1\|WP_012597498.1\|89026_89581_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	9.42832e-26
NC_011729.1\|WP_012597487.1\|73114_73993_-\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.21419e-99

>NC_011729.1|WP_012597495.1|83027_83252_+|hypothetical-protein
MESKPRSFKEIILLFAGGAGAGLIIFALFGGVWQVTHFWWVMTATTIFCGLLAAVFRQKFEKMLDVLMDNAPWI
>NC_011729.1|WP_012597494.1|82843_83008_-|hypothetical-protein
MNTHFFIVIVNSSSTNSIADAVTLELLNRTIEQNLRGFAAVEASIQETKGGLGL
>NC_011729.1|WP_012597493.1|82655_82847_-|hypothetical-protein
MIQQTPDPEAFKRAAKRLREACYVLDAFNLQLDELIAKVEEDIRRNSLRHKRLRKVEPISEPE
>NC_011729.1|WP_012597492.1|81942_82635_-|hypothetical-protein
MVQLQPSSEEEVIYPDSDGQPMADNTKQFRWIVIIKENLDWLFANDPNVFVAGDLLWYPVEGNNKIRQAPDAMVVFGRPKGDRGSYKQWQEANIAPQVVFEILSPGNRRAEMNRKLLFYDRFGVEEYYLYDPEQNNLSGWVRREGFLDVIESIDNWVSPRLNIRFNLVSPQLQIFYPDGSQFLTYTEISQRAQEAEQRAEQAETRAQEAEQRAARLAEKLRSMGIEPDEE
>NC_011729.1|WP_041237604.1|80235_81939_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MLRLEHISKIYPTGEVLKDINWEVKPEERVGLIGVNGAGKSTQLKIIMGKIEPTAGEVIRPASLHIAYLTQEFEVDPTRTVREEFWTVFAEANEVQHQLTQVQREMEMADPDDLDPLIKKLDKFQRKFEALDGYVLESQIEKILPEMGFSPEDGDRLVSSFSGGWQMRMSLGKILLQSPDILLLDEPTNHLDLETIEWLENYLKGLKTPMVIISHDREFLDRLCTKIVETERGVSTTYLGNYSAYLQQKEEAKLAQLSAYEHQQKEIEKQQVFVERFRASATRSTQAKSREKQLEKIERIEAPISDLKTLKFQFPPAPRSGREVVIIEDLVHTYNDNILFLGANLLIERGDRIAFLGPNGAGKSTLLRLMMGMEKASEGVVNLGKHNVIPSYFEQNQAEALDLQKTVMETIHDEVPEWKNEEVRTLLGRFLFTKETVFKKVEALSGGEKARLALAKMLLRPANLLILDEPTNHLDIPAKEMLEEALCNYDGTVIIVSHDRYFISKVANKIVEIREGELIAYAGDYHYYLSKIEEEKEKERQRIEAEKKAAKKAEQATKKKKKKEKVA
>NC_011729.1|WP_012597490.1|78750_80103_+|glucosaminidase-domain-containing-protein
MGNIFVWINYLDTLKKLNLGKTQAIEQMLRLRNEVVFELRSRGCKSFVVPEDLNLSSAIEWINDRADSLDIALGIGLDYSQDSRVRGTYITYIANNLDRKKQAELVLLLLLQSLPNLISRGTQPDTHTVMRQLPFCRQVIIPSLQVTLGCLSNSEDKTIVFNEHPKLVQGLADGLMAWSREVTGVEPNQQSFELDFTLDYPSIDIRWNNRMYEEKGILVQGNPCLPINLVERLGINLTDFSQMNLSEYKGIVYLKAIDLQAYHLKIEWEHLSQTLILHSILSFDSHQFENIMGQGKLSEVQMMMFLKLNNEKALKDFPQIAKFYREEATIEGVNPDIAFSQMCLETDFLRFDGHQLTNHHNFANLGTLEGNELAIFAEPRLGVRSHIQHLKAYSCLEPLVQDIVAPRFSVIVRGIAPTVSRLSGRWSADLSYGDKIIAIVNRLYESANLL
>NC_011729.1|WP_012597489.1|75661_78454_-|protein-kinase
MRCLQCHYEGIDPLTELCPNCGVYLPSLLREVLPKGTQLKNNTYQIDYALGRGSFGITYQAHHNILGYRVAIKEFFPQDYAIRNTNNGEITIPHNQEENFQKGLKRFLKEGQLLVQLNHPNVVKIQDLFAEKNTAYIVMELIEGATLGLELDSQPGKKLLPRRVEILMEQLVSALTAIHEAGIFHLDIKPNNILVTSKDRLVLVDFGSAKQVASNSINRTRFFTESYAAPEVIIGGKIGRESDVFELGMLLYEMLTGTLPPKALTRLFEGDTFTPHSLDNPWRTLVTSALHLKQEYRPKTVKEWWESRYKNFNSPGFSSGNGTSEKPLGMTLRGYFVLPFFKEQGMQRRFGRGLIKKVFFIKDNLAVVIAAGGTALFELKSGETLWEIDCPADKGTLSLDCSQLALIWQEIIYIWDLKTGGLLQQLKGHSKLINDVAFSPDGQILVSGSNDESLKVWDVISGQIIYHLQGHNAAVTCVSFSSDGRFIASGSRDQSVRIWLLDSGQEFRVLESPNLGIESIAFSVDNQWIATGSRDHKVRLWTIESAEILDRFDGHKDWVTSVAFSQDGHLLAFAGGINDKKIRVWNLISQKEILPLEGHGNTVNTIMFSPDSRYLISGSYDYTLRVWDLNEGGEIQQLKKHTNWVYTVACSPDNRLITCAGNDHLIHVWDSVQNRKIMSLAGHTDFVTSLAFSEDGKFLVSGSWDKTVRLWEVMSGKQLRCWPGHQDLIKSVAFSPNKRFIASGSWDKTVRLWDLSSPRLTLTGGKGVRILKGHTQQVECVTFSLDNLLLASGSWDQTIRIWEVSSGQEVQQFHEHTSPVLSVAFSPDSQWLISGGKDNILILWDVMKGTIIHKLQGHTHYVNSVAFSPDGKLIVSGSHDCTVRLWDVESGSLLQVWQGHTNSVKSVCFSADGTFITSGDNDGVVRLWRV
>NC_011729.1|WP_012597488.1|74162_75665_+|hypothetical-protein
MTKSVLQLQPIDKLSLSLIMAFSLVIGGLVWGGKACGDNCFFHNKPRVKEFSWDNQQIGAKDSSFIITFDRPMDQTSVEQNLIIDPPLGGKISWAGRRLAYTLNTPVPYGKTYQVHLRGAREKFREGNQSGQTVEPFFSQFTTRDRAFAYIGTQPNEQGQLILYNLTDNKKTILTPPNLVVMDFKFYPNGQKILFSAAQKSRGSFGIRELELYTVETEIQGDSKQELLPKIELILDNKDYQNNQFDLASDGETVVVQRVNRENPADFDLWMVKEGSKPERLNAPGGDFKITPDGQAVAVAQGQGIAIVPLKPDAEPLEFLPKFGQVLSFSRDGSAAAMVNFNTDNANLRYIRSLYYVNNQGVQKELLKVEGSIINCQFNPNGTALYCLLTQLLEDKEEYIEQPYFAKIDIKTGQLIPLVSLPDYRDIEISLAPDGLGILFDQVITRYDPTPNDPLTTDSGEAIVGSRLWLLIPPNGKPVKGTKPELNALPLVGFRPQWSP
>NC_011729.1|WP_012597487.1|73114_73993_-|SMP-30/gluconolactonase/LRE-family-protein
MNNELELVVETQALLGECPCWDHHKQLLYWVDILNKQLHIYSPQNNTDRIIQLEEYVSCVVPRSSGGVVLGLATGFAALDLDSETVKFLAKPENHPPTNRFNDGKCDPAGRFLAGTMDFEQRENAGFLYTLESNLQIKQLLDHTTVANGMGWSPDYSTLYFIDSPTQTIFAFDYDLDQGTIKNRREAIKIPDGEGFPDGMTTDLEGMIWVALWAGAKVMRWNPNTGELLQTIPIPARNVTSCTFGGQNMNELYITTARQDMNEDDFQKYPQTGSLFKLKTDVVGMTNFEFRG
>NC_011729.1|WP_012597486.1|72136_73042_-|alpha/beta-fold-hydrolase
MSSVSPLSISWDNSVKTWVWRGFPIAYQTAGDTGPAVVFVHGFGASWGHWRKNLPVLGQSCRCYALDLIGFGASAKPSPKGEIEYTFETWGTQVADFCREVVGSPVFLVGNSIGCIVIMQTAVDNPDLVLGIAALNCSLRLLHERKRSTIPWYRSLGATIVQKLLTNPSIGHFFFQQIANPKTVRKILLQAYRHPEAVTEELIEMLMKPATDEGAADVFLAFTGYSQGPLPEDLLPILPCDTILLWGDEDPWEPIELGREFAKYPTVKAFIPLKGLGHCPQDEAPEVVNPILQKWILEKKG
>NC_011729.1|WP_157867319.1|87197_87335_+|hypothetical-protein
MMRRGRILQFEREDCVIQLFRIGIPLFMATYLFLIVREIIEPRQQ
>NC_011729.1|WP_012597497.1|87567_88995_-|deoxyribodipyrimidine-photo-lyase
MSDLILFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQNYQQAGSQLLILKGKPSQAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEKGIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQQISLAKEAGIIDLPTAKDLGYLWENPLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAIDGTSRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFFPELADGPYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKPLRIFNPASQSQKYDPDGEYIRQWIPELKSLDTEYLVTGKIPTSELRQCGYPEPIVDHKKRQAEFKQRYKEVKG
>NC_011729.1|WP_012597498.1|89026_89581_-|Uma2-family-endonuclease
MTLTNIHLWTVEDYHRMIEAAILTTDDRVELLEGQIIEKSFQNAPHAATIQRASDYLRSLLSGRATIRVQLPITLPPNSEPEPDIALVRVDSRDYFEGHPRAKDIFLVIEIADTTLRVDPRKALIYARAKIPEYWILDLNNQQVYRYCNPAENNYQQETILVGDISVSLVIFPQVKIQVSSLFP
>NC_011729.1|WP_012597499.1|89626_90181_-|NUDIX-hydrolase
MQLGQEPSQFLENRLFYRGRKFNFEVNKLRLPIGIEGYWEVIRHPGGALAVPITPEGKLVLVRQYRFTVEGRLLEFPAGTVEPDEDPAETIKRELEEEAGYRAKTWQTLGKFPLAPGYSDEFIYAYLAQDLEKLDQPPQQDEDEDIEVVLMSFEEFEQAIMAGEPIDAKSITSFFMARLLMDNG
>NC_011729.1|WP_012597500.1|90192_90672_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTPAAIALGSNLGESVFILENALSKLAQTPKITIVSRSHWYNTTAVGPPQPDYVNGCAILNVDWSPERLIDILLEIEQDFGRMRREKWGPRTLDLDLLFYDNLILNTPKLQLPHPRMRERAFVLIPLAEIATDWIDPVTGKSIVDLLKAVDPSGVKLIH
>NC_011729.1|WP_012597501.1|91337_91544_-|hypothetical-protein
MSNPNIEVCPVCGVKIENGDKVIFSVGNPGTRARLYARVCNYVQKSGCINQEQESLGVISANDYYRPI
>NC_011729.1|WP_012597502.1|91652_93152_+|DEAD/DEAH-box-helicase
MVRVSTLTYNRGTLILHPPPKGKEWLDFATWDDRIEKFRIPGIYYRSLVETLQATETEFIDNAKEFMPLDLSPSVEMNPYPHQQEALLAWKKAGRKGVVVLPTASGKTYLAQLAMEATPRTTLIVVPTLDLLHQWYAQIEAAFPDIDVGLLGGGSKDRSAILIATYNSAAIHSEVLGNRYALVIFDECHHLPTDFFRRIAEDAIAPYRLGLTATPERTDGTHQHLDTLIGPIVYRKTPQDLSGQALAQHKVIQIKVKLSPKERETYDRAIKTRNDFLKETNISLSSLQGWQLFVQASARSAQGRRAMLAHREAKEIASGTDGKLRVLTELISQHYPEAILIFTNDNATVYRISQEFLIPAITHQTPVKERHDILKRFREGDYKILVTSHVLNEGVDVPDARIAIILSGTGSAREYVQRLGRVLRKGKTPDKLAILYEVITEDTSEERTSKRRRGAQEQQNPPEPPKHQQLELISFSEPKKRPKTPKAAESSTPWHPEEE
>NC_011729.1|WP_041237605.1|93546_93768_-|hypothetical-protein
MKGFNVLEATVEDYNYGAGDKIGLVGGLGQYLFSQVGSNVRITFTNNPDDWAAIINNANAFQLTLIDIIDPVG
>NC_011729.1|WP_012597505.1|97304_97970_-|calcium-binding-protein
MALISGTSGNNNLVGTANADTMFGYDLVVPSPDGNDTINGLGGNDTIYGGNGDDIIFGGFSSLAGSSDFLYGGNGNDSLVGGSGSDSLYGGNGNDTLTGGSGIDRMFGGAGADIFRFSSISDSNTGIGNRDVIEDFTVGIDRIDLSAIDANLDVAGNQAFSFIGTNDFSGAGVGQVRFTQVFDSNPRTVIEIDREGDNNLTTDMQIALSGIVNLSSSSFIL
>NC_011729.1|WP_012597506.1|98062_98953_-|helix-turn-helix-transcriptional-regulator
MSKQFSEDNFSNNNQSFNLYPQLPLFFNTQADWNEISLEYHIQPPGETPEFVLSHHTISINVGQNVQIERMIDGHLQSKVMFTGAVSFCPMALPHAIRWDTKAEILLLNLEDRLLSDNALELLNTDEIEIIPYHAIEDPLIQQMGLALRREFQSGQSDSKLYAQTMANALAVHLLRHYSTRGNKARTYTNKLPQHQLKLVKDYINDNLERSLCLHELAGLTQLSPYHFCRVFKQSIGKSPYQYVIQCRVERAKQLLKQSKLNLAEIAIVCGFAHQSHLCRHFKRLTGVTPKAFLKS

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Crispr_ID: NC_011729_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_3

465444-465541

Orphan

Consensus_repeat	Method
ATGCGTTCCCAACGCATCAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_3

>merge|NC_011729|3|465444-465541|CRISPRCasFinder
ATGCGTTCCCAACGCATCAAAACCTAAATTGTAGAATGCGTTCCCAACGCATCAAGAACTGTAGCCAATGGTAGGATGCGTTCCCAACGCATCAAGAA

>NC_011729|3|2|465444-465541|CRISPRCasFinder
ATGCGTTCCCAACGCATCAAAAC	CTAAATTGTAGAATGCGTTCCCAACGCATCAAGAACTGTAGCCAATGGTAGG
ATGCGTTCCCAACGCATCAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012597828.1\|456734_457460_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|275293
NC_011729.1\|WP_012597840.1\|467140_467437_-\|Nif11-like-leader-peptide-family-natural-product-precursor	unknown	unknown	gnl\|CDD\|369562
NC_011729.1\|WP_012597844.1\|470717_470915_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237974
NC_011729.1\|WP_012597831.1\|458115_458337_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597827.1\|455150_456665_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_011729.1\|WP_012597846.1\|471970_473827_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|224271
NC_011729.1\|WP_041237621.1\|464263_465415_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270690
NC_011729.1\|WP_012597832.1\|458588_460034_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NC_011729.1\|WP_012597839.1\|465745_467008_-\|nif11-class-peptide-radical-SAM-maturase-3	unknown	unknown	gnl\|CDD\|200354
NC_011729.1\|WP_012597825.1\|451728_452346_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379267
NC_011729.1\|WP_012597841.1\|467892_468600_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_011729.1\|WP_012597826.1\|452351_455078_+\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NC_011729.1\|WP_012597836.1\|463166_464252_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375425
NC_011729.1\|WP_012597847.1\|473865_474267_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597830.1\|457711_458119_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350311
NC_011729.1\|WP_157867519.1\|471344_471908_+\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
NC_011729.1\|WP_012597833.1\|460030_461332_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|214640
NC_011729.1\|WP_012597843.1\|469760_470585_+\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238819
NC_011729.1\|WP_012597842.1\|468851_469475_-\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NC_011729.1\|WP_012597848.1\|474550_476662_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|237425

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012597828.1\|456734_457460_+\|peptidylprolyl-isomerase	gnl\|CDD\|275293	TIGR04500, PpiC_rel_mature, putative peptide maturation system protein. Members of this protein family have a novel N-terminal sequence region. Close homologs to the C-terminal region of this protein score well to PpiC-type peptidyl-prolyl cis-trans isomerase models (see pfam00639), yet no sequence within the family scores well to such models, suggesting origin within a branch of the PpiC family but subsequent neofunctionalization with a rapid change of sequence. The genome context for members always includes an ATP-grasp enzyme associated with peptide modification and a short polypeptide likely to be the modification target.	2.45115e-12
NC_011729.1\|WP_012597840.1\|467140_467437_-\|Nif11-like-leader-peptide-family-natural-product-precursor	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	8.95911e-14
NC_011729.1\|WP_012597844.1\|470717_470915_+\|hypothetical-protein	gnl\|CDD\|237974	PRK15489, nfrB, glycosyl transferase family protein.	3.24853e-08
NC_011729.1\|WP_012597827.1\|455150_456665_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	8.03521e-49
NC_011729.1\|WP_012597846.1\|471970_473827_+\|PAS-domain-S-box-protein	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.52098e-75
NC_011729.1\|WP_041237621.1\|464263_465415_-\|phosphotransferase	gnl\|CDD\|270690	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase and Choline Kinase family. This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.88898e-11
NC_011729.1\|WP_012597832.1\|458588_460034_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	3.9689e-18
NC_011729.1\|WP_012597839.1\|465745_467008_-\|nif11-class-peptide-radical-SAM-maturase-3	gnl\|CDD\|200354	TIGR04103, heme_biosynthesis_protein, nif11-class peptide radical SAM maturase 3. Members of this protein family are peptide-modifying radical SAM enzymes, with a C-terminal additional 4Fe-4S cluster binding domain like many other peptide-modifying radical SAM enzymes. This form occurs primarily in the genera Cyanothece and Nostoc.	0
NC_011729.1\|WP_012597825.1\|451728_452346_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379267	pfam13565, HTH_32, Homeodomain-like domain.	6.90899e-09
NC_011729.1\|WP_012597841.1\|467892_468600_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.83782e-20
NC_011729.1\|WP_012597826.1\|452351_455078_+\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NC_011729.1\|WP_012597836.1\|463166_464252_-\|hypothetical-protein	gnl\|CDD\|375425	pfam17914, HopA1, HopA1 effector protein family. This family includes the HopA1 effector protein from Pseudomonas syringae. Structurally this protein has an alpha + beta fold. The effector protein HopA1 was shown to affect the EDS1 complex by binding EDS1 directly and activating the immune response signaling pathway.	6.07414e-69
NC_011729.1\|WP_012597830.1\|457711_458119_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350311	cd18744, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.39677e-62
NC_011729.1\|WP_157867519.1\|471344_471908_+\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	3.82145e-92
NC_011729.1\|WP_012597833.1\|460030_461332_-\|AAA-family-ATPase	gnl\|CDD\|214640	smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.	0.0014564
NC_011729.1\|WP_012597843.1\|469760_470585_+\|inositol-monophosphatase-family-protein	gnl\|CDD\|238819	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.	6.18084e-104
NC_011729.1\|WP_012597842.1\|468851_469475_-\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	2.83998e-129
NC_011729.1\|WP_012597848.1\|474550_476662_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	4.54401e-84

>NC_011729.1|WP_041237621.1|464263_465415_-|phosphotransferase
MMFTLSVKNSLDYLNQRNLIDLSTKSLVNLDVIQAKNFNVLLTFSDGKKILVKQERLNPKEKIGGDFLGEKSIQEFWRNFPELEELNQFLPQLIDFDAENYIVVYNYLGSYQDLYQFYLKDKIFSTAIASSIGTTLGKIHRLTFQKQDYKIFLQQRESDSQLHPVFHLINKLERIPPEIFGMIPKDGLKFFALYQRFDSLGKAIAELGDSYCACCLTHNDLKLNNIILDKNWKNKPDNLVKFIDWERLRWGDPAFDLGMLIGNYIQMWLSSLMISKSLSIEESLRLATIPLETLQPSIGTLMLAYLKTFPDILQTRPDFLKQVVQFTGFALIQQIQVMLQYQKTFNNSGIATLQVAKSLLCRPETSLPTVFGATFTQFSPLSV
>NC_011729.1|WP_012597836.1|463166_464252_-|hypothetical-protein
MIQLDETLLLSSTIDPKRELLNTLEEIVNKVEIKPNFSISHPDYQPLEVTQEILEHLQKMPEDLQKKYLSLLLRTFLYGIYYNGSMRNALGIHQEKPNFALDLENNTFLEVDVEFYERLQENNHGEGYFDSDWSILHQENDGTFAVIKGGLRLHIEKNIHLQPHQKNAQSGDIVSIRMPKNLLQNGFYVAVGNEGLQSSLQAVRMYFNFTPEGAVKVMDSLTQELNQLAIPFSFKVLYNPGDYGRYDSGVLYFDKHNYRVIKPVLLKIYQAHQSEFKSQVPLFTLSLAPGLGLAEEPEQKFAVQESFGMNRCQLVANGLIKAWYQKEYSSEGGMRAILEQFNILEIDLERPYLNPNAEDIY
>NC_011729.1|WP_012597833.1|460030_461332_-|AAA-family-ATPase
MTANRLEQFQQAFRNLQLQPLITPEEIKNFRVEYNEELLEELEQPVFDCSDYTNKLFFVGHRGCGKSTLLKEFAEKIQSDYFTVFFSIADLIEISDINHINILFAIAVQIMTQADEENIDIEIAKKQKFYDWFKEKTQITQYGASAEAKAGFNLLNFISGALKTNATFREEIKTKFEKNTRELLDLINLIATEIMLACNKKIVVIIDDLDKVSLAKVEEIFKYNIKVLLEAKFIVIYTIPIATIRDGVLSSYMKNEAGNRFFVMPVLKMYAKGDSHKPDSQPVKITMNKLREILRRRIDDDLIDEDVAIKICLYSGGVIRELIRIAQECCRLMLLQLRRKLKNQESIEGLRIDNTIIDKALNQLRNSMAITLSKTDRDILIQTYNNYRPDDPKEQNFLDLLHNIVAIEYRNDETWYDLHPLIIMQLKQEGLIS
>NC_011729.1|WP_012597832.1|458588_460034_-|tetratricopeptide-repeat-protein
MNNITYESVAQANEEIYEKLLVSIEAGVGMLQIFIAVCDTDRQREAIITRYERDLAPSINTYRVFLDPEEPTLRLAVSQQITDTKRENAVAMVMGTQTLGLRKNDESLNKFFGYLQWTREGLRELKMPIVLWIPSRILVQLAKKAPDFYSWRNGVFQFQPEPYEETVEPLTTQSIEFEGNKSSSIFDVEQLESSLAKALAMWGENSSNLEPLYSQLGNLYADRVQSGESPDREREFILAQDYLNKAIALQTQFKQEDALAHTLSTLALLYRSQGRYTEAEPLFLQALELSKHILGNNHLDVATSLNNLALLYDSQGRYSEAELLHKKTLKLRKHLLGDNHFDVATSLNNLALLYKSQGRYEEAEPLLRQALELYKRLLGENHPNVATCLNNLAALYDSQGKYEEAEPFLIQALELRKRLLGDNHPDVAISLNNLASLYSSQGRYAEAEPFFLQALLILEKSLGEHHPHTQTARKNLQRMRR
>NC_011729.1|WP_012597831.1|458115_458337_-|hypothetical-protein
MTLKEQLIKEIETTPISLLPEILHFVKSLKTKHPDIDFMEFAGIAADAENIMQEIVQEAEANRQLDSLRMNDL
>NC_011729.1|WP_012597830.1|457711_458119_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MNQALLDTNILSYFLRGNPAVIEQLRIYRQHYSYLSFSIFTYYEIKSGLLYKDARQQQQQFERLAQISEVIPYDREISDIASQIYVNLRTKGQLITPIDLFIGATALYRNYTLITANIKHFQNIPNLNYENWYNG
>NC_011729.1|WP_012597828.1|456734_457460_+|peptidylprolyl-isomerase
MVQTVKITEEEILKQVKLSSMMTDVVKDIVNRKIIEDETQKLGITVDEKELQQAADKLRLMYQLYKAEDTWKWLKENHLTVDDFEEIVFNKALSSKLAVHLFNDKIEPYYYEHQLDYTGVIMYEVILNDEELALELFYALQEGEITFSEIAHQYIEDTELRRKGGYRGLVYRKDLKPEISATVFAAKPPQVIKPIVTSKGVHLILVEEIIQRQLDNPLRHIIANSLFNEWLEKHTQQVEII
>NC_011729.1|WP_012597827.1|455150_456665_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MPNSLNGRTEDYYNLESEVIQFPEVRSSDNDWSYSTKELLDSLPKVWTRGLLYFLVIFITIALPWAMFSKIDETGKAQGQLEPKGKTIRLDAPVSGTVATIKVKEGEKVKVGQTLVELESDLVNADLQLQKNKLEGQENRLHQLDILKNQLQIVLQTQTQQNQAQKLEKLAQVNQAKQELEVLQNTYHLQQQEKLAQVNQAKQDLQHSQVDNHLAGIGLKTAEHEAQRYREAAEEGIVSQIQIVEKEDVIQERTRVYEQTKSDIEQAKLRLSEQQSIYERTIKQTKSDIEKSKLRLKEQENSYNSLIQSGEIAILKVKEQLKNVETDVTSLKSEIKQTKSQIQSLEFQLSQRVIKSPVEGTIFDLAVEREKSVLQSGNKIIEIAPQGTKLVLRAEMATQESGFLEKGMLVKMKFDAYPFQDYGIIEGKLSQVSPTTKKIETSDGETSAYELEIELDQTCIPSSKECIPLRPGDTATAEVVVRQRRLIDFILDPFKKLNSGGLEL
>NC_011729.1|WP_012597826.1|452351_455078_+|peptidase-domain-containing-ABC-transporter
MVQNTTDTLISHQQLQQTLGYAIKAADYAKYLKQIKILEPKVGRFWQTENAEAGIYIILTGKVRLINSEGDLMTTLEEGASFGECTFFPDDNFAPYSVRVSVKTVLAYLSPELLFPLINKYPQIRDHFYHQAQNYHNLLPKSELSSEQSTPQTAAIIPVAFTPEAQKSQKPISKAYFPNPTQRVGHLLQRVIRRYPFYAQQSGSDCGAACLIMVARYWGKKFSLNRIRDIANVDRNGASLRGLSAAAESIGFSTRPVKASLDQLAKQQLPAIVHWEGKHYIVVYEISRRKVIIADPAIGQKTLTHREFKANWTGYTLLLQPTTLLQRAKEHTNSFWQFFDLIKPHGLVLFEVFIASLFIQIFGLVTPIFTQLILDRVVVQRSELTLMAVGLGLLIFGLFRVAMMGLRQYLLDHTANKVDLALIVGFIRHTLRLPLSFFESRYVGDILSRVQENRKIQRFLTGEALSILLDLLTVFIYVGLMFWYSWKLAILALAIVPPFFLLAIIATPFLKRISREIFASIANEQSYLIEALSGIRTVKSTSVEQTVRWHWEELLHQEVKSNFSGQVIGNRLQIFSNTIEALATTGLLWFGAWLVIQNQLTIGQLVAFNMLLSNIIRPFQRLTVLWEQLQEVVIAVERLNDVLDYEPEEDLHHQARQSLPRLQGEIEFNNVTFRYHPESDLNILENLSFKIKPGQMVALVGRSGSGKTTISKLVLGLYMPTDGKILIDGHDITSLSLHSLRGQIGVVDQDTFLFGGTIRENISLGHPSSSLEEIIKAAKLAGADDFIKRLPMGYETQIGEGGGLLSGGQRQRIAIARALLGNPRLLVMDEATSHLDSESERIIQNNLNSILKNRTTLIIAHRLSTVRKADLILVLDRGVLIESGTHQELMAKRGHYYYLNQQQLDVTP
>NC_011729.1|WP_012597825.1|451728_452346_+|helix-turn-helix-domain-containing-protein
MNTAKQKSPDKNKDLENFKTGKFLTPFQRKLLQKSCQNRELSEPYRQRLQIMLLADEGKSQAEICQQVGCCHGTARHWILMARTGQAHHWQDQPIGRPKAVNDQYLERLKELVNQSPKDCGYSFSRWTAGWLSKHLAKEFEIEVSDRHINRLLKQMGLSTRPKSPQTQNNNSLTHSGKRILIDDLSSHSNLDPQPLWHLQTLTFN
>NC_011729.1|WP_012597839.1|465745_467008_-|nif11-class-peptide-radical-SAM-maturase-3
MNYQRISYAVWEITLKCNLACQHCGSRAGHSRNKELSTEEALNLVQQLAEVGIKEVTLIGGEAFLRPDWLEIAKAISQAGMLCGMTTGGYGITLDTAQKMKEAGIKMVSVSMDGLETTHNYLRGKKDSWQWAFKTMSHLKQAGISFGCNTQINRLSAPEFPRIYETIRNAGALAWQIQLTVPMGRAADNSNILLQPYELLDVYPMIARVAQRAKREGVKIQAGNNIGYYGPYERLLRGGDDWSFWQGCGAGLSTLGIEADGAIKGCPSLPTTAYTGGNIRDYNLKTIIEETEELRFNLGAGTPKGTEHLWGFCKTCEFAELCRGGCSWTAHVFFDRRGNNPYCHYRALTQEKNGIRERVFLKRQADGNPFDNGEFQLIEEPINTPWPDNDSLHFTADKIQWPEDWAEETNMSLPLAVSNV
>NC_011729.1|WP_012597840.1|467140_467437_-|Nif11-like-leader-peptide-family-natural-product-precursor
MSLQNVEAFYQRMTTDPEFSNQVQQAKTSEERIKVIRNEGYYFTQEEFDEYTDKFLMSKFEEGELVDLSERELDAVLGGLKGSFPKAIALYGIPPYLY
>NC_011729.1|WP_012597841.1|467892_468600_+|tetratricopeptide-repeat-protein
MLESKDQVMNYNTVNNPSLSEIGSFYPLKREKNRFILVGSEENLQLSVRQKAKQGDYSGAIALLDQLIKWYPQNALVYNNRGLLYFWKGQNFQAIKDYNQAIKLNEKLDKAYNNRANCYVSQGNWAAALTDYETAIDLNPANIKAWMNQGITLRELGLYDLALDNFDWALMISHRFQGRLYAERGYTYHLRGDWNCAIADYHRALSVLPLTDNYLPYRQKVEGWLSELLTYSGVR
>NC_011729.1|WP_012597842.1|468851_469475_-|imidazoleglycerol-phosphate-dehydratase-HisB
MQTLNRQIPSFENRIATVSRTTKETDVQVTLNLDGQGKCSAATGIPFLDHMLDQIASHGLIDLDVRATGDINIDDHHTNEDVGITLGQALLKALGDRKGIVRFGHFVAPLDEALIQVALDFSGRPHLSYGLQIPTQRVGTYDTQLVREFFVALVNHSQMTLHIRHLDGINSHHIIEATFKAFARAMRMAIEIDPRRSDAIPSSKGVL
>NC_011729.1|WP_012597843.1|469760_470585_+|inositol-monophosphatase-family-protein
MSTHLHPLDQDINLAEQLADISGEIIRRYFRQPHLRAETKLGQVSSIVTIADQQAEEAMVKMILTHAPDDGIIREEGENIPSRSGRYWVLDPIDGTSSFVKGLPIFGTLIGLVDLEQNLPLLGVVNQPILQQRWLGIRGKPTYYNHQPVVNPYANDDQSKLEDACLTSTTPLMFITDRQQQIAKKLQQICVRTAFGGDCYNYVALASGWCAMPMIILEADLNFYDFCAIIPIIQGAGGIITDWSGNTLVPQSTEVIACSTSSLWEQALQEIESI
>NC_011729.1|WP_012597844.1|470717_470915_+|hypothetical-protein
MLLGQILMRKKLISPDQLEAVINQQSTSKKKLGELLLQRGLIVNEELEAALKEQYWRKNGFWVID
>NC_011729.1|WP_157867519.1|471344_471908_+|chemotaxis-protein-CheB
MAASAGGLKALSEVLSHLPSNFPAAIVIVQHLDPSSRSFMSQILTRRTTLEVKQAEEGDTLEPGSIYIAPPNYHVLVNSNGTLSLTQSKLVHFVRPSADLLFDSVAKSYKNRAIAVILSGTGKDGSVGIKTIQEMEGVVIVQDEKTSEYFGMPDAAIKTGKVDYIVPLDEIASLLLTLVTENDPKMR
>NC_011729.1|WP_012597846.1|471970_473827_+|PAS-domain-S-box-protein
MTTSENDPVFESLLEFLRQSRGFDFTGYKRSSLQRRVRKQMQSHNIDNFGDYLDYLQVHPEEFLPLFNTILINVTGFYRDLNAWQYLQRQVINRNFDLESDRKPIRVWSAGCASGEEAYTLAMILADSLGIEKFRQRVKIYATDLDEEALSQARHASYSDKDLNSFPQELRDRFFEQVGNLYVFRPDLRRAVIFGRHDLVQDAPISRLDLLVCRNTLMYFNAETQGKILQRFHFALKNSGILFLGKAEMLLTHTNLFTPINLQHRIFRPVPKNNRQRTVTLVPLIDDEMDNAIERYSRVREIAFDSVSLAQLIIDLNGNLILANTPARTLFNINLLDLGRPLQDLEISYRPLELRSYLDEIYRTRSNIVVNDVVRNLRDNTTQYLDVQFNLLEDNNGEMLGVSITFTDVTRYHELQEELQRANQELETANEELQSSNEELETTNEELQSTNEELETTNEELQSTNEELETMNEELQSTNEELQTINDELRQRTSELNQANAFLNSILTSLQAGVVVVNGQFNILTWNEEAENMWGLRADEVQEQSILSLDIGLPVEQLREPIRNCLTGTTNSQEITLEAVNRRGKRIQCRISLNPLISHERERQGVILLMEEVEILDQ
>NC_011729.1|WP_012597847.1|473865_474267_+|hypothetical-protein
MASSDNISREHHISQESFDLANKHAKSSLKHGKQLEELGKGLQQRGRNQGKIIENQGKKVQEHAKDSLQILKKAEYEQEEGLGGTETFTSVAKEHIKQTQAQVKGVKEFGQVVTEQIKLSKELMNDNKSDQPK
>NC_011729.1|WP_012597848.1|474550_476662_+|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator
MDIKNFEQQIQKAHYRWQNLQKSAEESSEPSTHWQTEIITELSIALEELRVATEELHEQNEQLDIAREEAEEVRQHYQDLFEFAPDGYIVTDEKGVIQEANEVASQLLNVQKKYLFNKPIDIFVARIDQDIFNNHWSKIQKTLNNLGNYQPQKFIKSWEMILQPRHQDPFPVAVSVSVSVNIKGEIIKLRWLLRDLTQQKKTQEQLSEQAALLNVVSDAIIVYNLHDQIVFWNRSAQDLYGWTAQEIEGKNISLILSADSQQKLAQIYQSLFKQGEWKGELNQIKRTGKSIIVDSRWTVVRDEKKNLKSILVVNTDITLAKQLETERLQSQRLEIIGSLASGISHDLNNILTPILGMAQLLPRKLPHADEQIQQMFKIIEINAQRGASLLRQILTFSRGFTPKQDPILVDSLLSDITHLAQETFPKSITIDNFIPPNLWAIRGDTTQIHQVLMNLCLNGRDAMPDGGNLTLTAQNMVIDECYTSMETNAQPGLYVVITVSDTGVGIPEPIKKRIFEPFFSSKELGKGTGLGLSIVMNIVKNHGGFIKVLSEPGKGSQFQVFLPAVNISLSSAKKNIDLPKGNGALILVVDDEANINQTTKHLLNTFGYQVLTANNGIEALALYAQYHDKIEAILMDMIMPSMDGITAIRTLQKINPQVKIIATSGLSSIEESADIFDDNVKAFLHKPYTSQDLLTTLYKVLSN

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Crispr_ID: NC_011729_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_4

535108-535190

Orphan

Consensus_repeat	Method
AGCGTAACGCACCTCTACCCATGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_4

>merge|NC_011729|4|535108-535190|CRISPRCasFinder
AGCGTAACGCACCTCTACCCATGAACCAGTTAAGCCGAATTGTAGGGTGTGTTAGCGTAGCGTAACGCACCTCTACCCATCAA

>NC_011729|4|3|535108-535190|CRISPRCasFinder
AGCGTAACGCACCTCTACCCATGAA	CCAGTTAAGCCGAATTGTAGGGTGTGTTAGCGT
AGCGTAACGCACCTCTACCCATCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_157867523.1\|533351_535085_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|223503
NC_011729.1\|WP_012597891.1\|530821_532549_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|223503
NC_011729.1\|WP_012597888.1\|527980_529066_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_011729.1\|WP_012597896.1\|536220_537054_+\|alpha-L-glutamate-ligase	unknown	unknown	gnl\|CDD\|223267
NC_011729.1\|WP_012597897.1\|537139_537778_+\|DUF1361-domain-containing-protein	unknown	unknown	gnl\|CDD\|369208
NC_011729.1\|WP_012597889.1\|529238_529727_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NC_011729.1\|WP_012597894.1\|535461_535677_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012597901.1\|540181_541333_+\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213362
NC_011729.1\|WP_012597892.1\|532679_533252_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225965
NC_011729.1\|WP_012597899.1\|538758_539232_+\|TspO-and-MBR-like-protein	unknown	unknown	gnl\|CDD\|226007
NC_011729.1\|WP_012597904.1\|543439_544201_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NC_011729.1\|WP_012597890.1\|529743_530382_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NC_011729.1\|WP_012597886.1\|525852_526956_+\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|273039
NC_011729.1\|WP_012597885.1\|524354_525644_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|179486
NC_011729.1\|WP_012597898.1\|537821_538388_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|377965
NC_011729.1\|WP_012597895.1\|535681_536146_+\|DNA-phosphorothioation-associated-protein-4	unknown	unknown	gnl\|CDD\|274953
NC_011729.1\|WP_012597903.1\|542032_543355_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NC_011729.1\|WP_012597900.1\|539256_540042_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_011729.1\|WP_012597884.1\|522617_524021_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237045
NC_011729.1\|WP_012597887.1\|526965_527997_-\|histone-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|212525

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_157867523.1\|533351_535085_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	2.50217e-174
NC_011729.1\|WP_012597891.1\|530821_532549_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	7.56159e-174
NC_011729.1\|WP_012597888.1\|527980_529066_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.88627e-101
NC_011729.1\|WP_012597896.1\|536220_537054_+\|alpha-L-glutamate-ligase	gnl\|CDD\|223267	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis].	5.81993e-16
NC_011729.1\|WP_012597897.1\|537139_537778_+\|DUF1361-domain-containing-protein	gnl\|CDD\|369208	pfam07099, DUF1361, Protein of unknown function (DUF1361). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.	6.05506e-53
NC_011729.1\|WP_012597889.1\|529238_529727_+\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	1.37697e-11
NC_011729.1\|WP_012597901.1\|540181_541333_+\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213362	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.1085e-160
NC_011729.1\|WP_012597892.1\|532679_533252_+\|hypothetical-protein	gnl\|CDD\|225965	COG3431, COG3431, Predicted membrane protein [Function unknown].	3.70198e-30
NC_011729.1\|WP_012597899.1\|538758_539232_+\|TspO-and-MBR-like-protein	gnl\|CDD\|226007	COG3476, COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms].	2.38451e-37
NC_011729.1\|WP_012597904.1\|543439_544201_-\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	9.34154e-97
NC_011729.1\|WP_012597890.1\|529743_530382_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.32073e-102
NC_011729.1\|WP_012597886.1\|525852_526956_+\|calcium/sodium-antiporter	gnl\|CDD\|273039	TIGR00367, Uncharacterized_membrane_protein_MJ0091, K+-dependent Na+/Ca+ exchanger related-protein. This model models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat. [Unknown function, General].	1.32265e-82
NC_011729.1\|WP_012597885.1\|524354_525644_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|179486	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NC_011729.1\|WP_012597898.1\|537821_538388_-\|SH3-domain-containing-protein	gnl\|CDD\|377965	pfam08239, SH3_3, Bacterial SH3 domain.	0.00021644
NC_011729.1\|WP_012597895.1\|535681_536146_+\|DNA-phosphorothioation-associated-protein-4	gnl\|CDD\|274953	TIGR04062, hypothetical_protein_CY0110_29519, dnd system-associated protein 4. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein fam ily are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of species such as Nostoc sp. PCC 7120, Geobacter uraniireducens Rf4, and Roseobacter denitrificans OCh 114. [DNA metabolism, Restriction/modification].	1.14942e-73
NC_011729.1\|WP_012597903.1\|542032_543355_-\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.02365e-77
NC_011729.1\|WP_012597900.1\|539256_540042_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.80508e-78
NC_011729.1\|WP_012597884.1\|522617_524021_-\|hypothetical-protein	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0.00521859
NC_011729.1\|WP_012597887.1\|526965_527997_-\|histone-deacetylase-family-protein	gnl\|CDD\|212525	cd10001, HDAC_classII_APAH, Histone deacetylase class IIa. This subfamily includes bacterial acetylpolyamine amidohydrolase (APAH) as well as other Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Mycoplana ramosa APAH exhibits broad substrate specificity and catalyzes the deacetylation of polyamines such as putrescine, spermidine, and spermine by cleavage of a non-peptide amide bond.	7.49732e-151

>NC_011729.1|WP_157867523.1|533351_535085_+|MBL-fold-metallo-hydrolase
MMMSTLSPTRPRDVQVANLATNTTIIRSRTWDRLKFEVEYARQKGTTANSYLIKSDRIALIDPPGESFTQIFLEELQQHLPLNQLDYIILGHVNPNRMATVKVLIQQAPQVKLICSKPAAKLLKNAFPEWESQIQIVRSEDTLDLGGGHQLQFIFVPTPRWADGLCTYDPQSRILYTDKLFGVHLCDDVLYDEDWKQLDQDRRYYFDCIHAAQAKQVESALDKLGTFTAKYYAPGHGPVVRYSLSRLTYDYRQWCQQQKTQELKVALFYASAYGNTATLANAIAQGLVDNGIAVDSINCELADPAQMSEAIENCDGFLIGSPTLGGHAPVQIQTALGIILASAAKTKLAGVFGSYGWSGEAIDLLEEKLRDANYRFGFESIRVKFTPDEPILQQCQEAGANFAQALKNKQKMRVPRSPVTEGQADRTEQALGRIIGSLSVLTTRRGERDQGFLTAWVSQASFNPPGLMIALGEQQGAEALIEPGTQFVLNILQEGRTLRRHFSFNVSGENTFPDVETQRSTNGCLILSSALAYLECTVQQRMASGDHWLIYAVVNKGEVLERNGVTAIWQRKSGSCY
>NC_011729.1|WP_012597892.1|532679_533252_+|hypothetical-protein
MQETLTESSKQRSSLLNLNIIVQSLELIQDFIVICLCLGLFSFMVLQIREMFLSLLPPVQFQAVTADILSLLIWVELFRLLIIYLKEQRVSIGVAVEVAIVSVLREIIVRGVLETNSTQVLAACGFLLVLGVLMVVRVWLPPTFDGIDPENQVSKRHKSRLILPNTDSNTHNNSTSPLFKVNPTENHQST
>NC_011729.1|WP_012597891.1|530821_532549_+|MBL-fold-metallo-hydrolase
MIAPTTTTQPVNSGRLTTQTLEIGEQTTAIRSLDWDRDRFDIEFGLRNGTTYNSFIIKGEKTALIDTSHRKFEQLYLDALKELVDLSKLDYLIISHTEPDHSGLVKEVLKLAPQVVVVGAKVAIQFLENMLHQPFQHLTVKSGDRLDLGNGHHLEFVSAPNLHWPDTIFSYDEKTRILYTCDAFGMHYCDDHVFDEEPELLEEDFKYYYDCLMGPNARSVLAGIKRMEKLNIGMIATGHGPLLQHHLQEWVNRYRQWSQEQAKTDTLVALFYSEDYGYSDQLARAIALGIHKTGVAVELIDLSSSDPHEIREWVHQAAGIIIGMPPQSDKIAHTALSTILATANPKQSIGLLESGGGEDEPIYPLRNKFQEIGLTEAFPPILVKEPPTPTLEKLCDEAGTDLGQWLTRDKTIKQMKSMDTDLDRALGRLSGGLYLITAVKEDVTGAMLASWVTQASFEPLGVAIAVAKDRAIESLMQVGDRFILNVLEEGNYQKLMKHFLKRFAPGADRFEGIKTYQGSNGCPILAEALAYMECVVTSRMESSDHWIIYSTVQVGRVAKIDGLTAIHHRKVGNHY
>NC_011729.1|WP_012597890.1|529743_530382_-|phosphoribosylglycinamide-formyltransferase
MTNQLPSFISPQYSLEELPLDKTLKLGVMASGSGTNFEALAQAIADKRLNAKIEVLIYNNPDAKAKERAQKWNIRHVLINHRDYKKNREALDQKIVETLKHYEVEWVIMAGWMRIITPVLLNAFPNHVLNIHPSLLPSFKGIKAIEQALEAGVKVTGCTVHIASLEVDSGPILIQAVVPILPDDTPETLHARVQIQEHKIFPIGIALAAKQY
>NC_011729.1|WP_012597889.1|529238_529727_+|metal-dependent-hydrolase
MPSPIAHGVTGYVLSNSLPLKKLNFYLFYGVFVAIAPDFDFIPQWITGEKFHRGVTHSLVFALAFSLIAAGLIHYSRKDSYKLIFFCTFIIYSSHLFLDMFSMGSPGIKLLFPFSNDYIRASFLIFPPIDYTLGLFHPSYLVFLGVELGYSILLLILLRIVK
>NC_011729.1|WP_012597888.1|527980_529066_-|glycosyltransferase-family-4-protein
MNQVLINLSVIFNKPTGISNYILNVLPYLKPLNPILLTASSREGFKTYTIPENLSPEQGIKGHFNRLLWTQFKLGKIYQDLKGSLLFSPLPEAPLFQNYPFVVMVHDLIPLRFPNPYSPLTPYFRYYIPQVLRQADHIICNSQATAKDIQDFLGISAQKITPIPLAYDDHHFRPLSLPQPEHPYFIYLGRSNPHKNLPRLISAFAKLPNCKEYQLWLAGPKDPRYIPKLESQVKELELIDRVKFLDYVSYDQLPVILNQALALVFPSLWEGFGLPVLEAMGCGVPVITSNLSSLPEVTSDAAILINPYHTEEITAAMAAIARDSQLRSHLRSLSLQRAQTFSWAKTGQATLEILKHYANCL
>NC_011729.1|WP_012597887.1|526965_527997_-|histone-deacetylase-family-protein
MLTVYSPDHLYQNAQFELIDGQLLPPVDTPKRVEAVLEKIEAIKLGEVLPAQEFGLDPILRVHEDSFVNFLQNAWSDWVKEYGEKEALPLNWPARTLRQDKIPEAIDGKLGYYSFDAGTPITAGTWRAAKASANVALTAQQLLKTGEKTVFALCRPPGHHAAKSLYGGYCFLNNAAIATQALLDAGAQRVGILDVDYHHGNGTQDIFYHRNDVLFVSLHADPRLDYPFYLGYEDETGIGQGEGFNFNYPLPWGIRWPEYCQRLKQGIDLMINYSPDVLVVSLGVDTYEHDPIAKFALTTEDYLSLGKMLASINKPTLWVMEGGYAVPEIGNHITNVLIGFEDN
>NC_011729.1|WP_012597886.1|525852_526956_+|calcium/sodium-antiporter
MNIFVLSQLVAGLVLLVVGAEILVRGASKLATLLGIPSLVIGLTIVAYGTSAPEMAVSVQSALAGEGDIAIGNVIGSNIFNVLAILGISSVVVPLFVDKQLIKLDVPIMIGLSVLTFFFSLDRTINRSDGVILFLGAVIYTAFLFYQSRREKPSEEELKQEEQQIIGHISLVQWLTNIGFIIIGLGLLVLGSRWLVNSSIIIAQAIGVSELIIGLTIVSAGTSLPELATSVVASFRGERDIAVGNVVGSNIFNILAVLGLAAAVSPTGITVSSSLLNFDLPVMIAVAVACLPVFFTGRRINRWEGLLFLGYYVAYTIYLLLKSTQHDSLPIFSSIMLSFVIPITAVTLLVLSLQSLHKRNKRKTKEL
>NC_011729.1|WP_012597885.1|524354_525644_+|glucose-1-phosphate-adenylyltransferase
MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEITKIYVLTQFNSASLNRHLSRTYNFTGFNDEFVEVLAAQQTAENPSWFQGTADAVRQYLWLMEEWDVDEYLILSGDHLYRMDYREYIQRHRETKADITLSVVPIDEKRASSFGLMKIDDNARVVDFSEKPKGEALRQMQVDTSILGLSPDQARKNPYIASMGIYIFNREVLGKLLRQNPEQTDFGKEIIPGAKTDYNLQAYLYKGYWEDIGTIEAFYESNLALTQQPQPPFSFYDEKAPIYTRPRYLPPTKVLNCTITESMISEGCILKDCRIHHSVLGIRSRVESDCTIEDSMLMGADYYESSTKRKAVLEAGKVPQGIGAGTTIRRAIIDKNARIGRNVLIINKDRIEEAEREDEGFLIRSGIVVVIKNATIPDGTVI
>NC_011729.1|WP_012597884.1|522617_524021_-|hypothetical-protein
MGFFGKISLCLLFLSCSYILPSSSKIGQCDSAVLAANETREFGSHGNNGNNGERGQNAQNTQSTTVFADGSPARLNLAGQNGGEGKNGQNGADAKCVDQPQDVTHNLRATNGGNGGNGGDGGDGGNGGDLTVYTTNPANLRQITVNTVGGQGGQPGLGGKGGKGCQCSRPYWTVQTCRGRPGSSNYRCTTETFQCQNGLDGIDGTQGRVGRDGRLGQLTLISLNRPLVDDKPSATVALSELKDRGFTLSKNKWETRTGALSLFAPGSVIDDQYRIMVERLEHSFLLTWNAPQSFDKFAAQRMTLSLEDNQQINVNPPSQVWLEATTKKDNNMTQFVVYNAILEKEVTDLVSQGIAGNRADFQLTLEDKADLSNLIATKFEVRYRTTRSDPRFRQVSDYRTQYEGFMPPELINQQGNKFIFNMGKLPLDPENFRPGLGFEIEVIATRSFGGYSKQQTIIVRDIIPGLR
>NC_011729.1|WP_012597894.1|535461_535677_+|hypothetical-protein
MAKIALFLPDELLNYLQEKGKEPKALIETLVQEWRQQNQIEELAQACAIIDQLELGWTQEWQQAVIKDFQG
>NC_011729.1|WP_012597895.1|535681_536146_+|DNA-phosphorothioation-associated-protein-4
MAISRIRIAKDKGELVQALVDFNGATGPFQTYADVMAFAAALGAKLKKRVPLSIISKEPAPISLEIFISRGYDTLIKLLAIAETKDPKILSVYEAEAEAQRVEIFEEYANGGLERLRDEVRGAVDYSDRLLLLLSNERLPEEPSQEEFDLSRFL
>NC_011729.1|WP_012597896.1|536220_537054_+|alpha-L-glutamate-ligase
MLTNIRLLLSACEALEIKSENFHPTRNLVKVTLNDKDYFFTNYSTPFLTQSTGQLFKDKDYVYHVFKNFVNLPKTLSFLSPYCHEKYQPYLIFKDIDSIVEEIARHFSPPLIVKKNGGSGGDNVFLCQDLSQVRVCLEEIFNINSRLYDYVALAQEYINIDREYRAVIFKNELLLLYEKSTKNATFTGNLSPLHWEGAKAIHITDEQEIFPFKKFLQPIFQAMTIDYGGFDIAIDKTGNYWFIEVNSHPNFDIFIRDNDEGIIIEMFKKILKSYLEM
>NC_011729.1|WP_012597897.1|537139_537778_+|DUF1361-domain-containing-protein
MIDKLLKWLKHSLSALAHSRYLITWNLFLAFIPLVLSVWLFRWSKKASIFWWIVFLVFIAFLPNAPYVLTDVIHLIDLIRSGYSVWTITLVLIPQYTLFILAGFEAYVMSLINLGFFLHRQKLSQYILAVELIIHALSAIGIYLGRFERFNSWDFVTKPKILLSSIMDNLARKQPIIVILITFVVITGLYWLVKQVNLGVALRIKESKSGKS
>NC_011729.1|WP_012597898.1|537821_538388_-|SH3-domain-containing-protein
MIDFNQFKYIISSSILLSLGAGFGMTSPVQAQIPSTCYMITNTGQYINLSSICGIEQNPTNSQSNAVTGQQTNQNQSSYQQNVTQQQATGQQRNVLEQGTIAIPTGYTTSRQGLGGTVISGQWQPILDSASLRTEPGTGSLVQQLQEGQPVRVYDGMQTNNSVFVETENGQRGWVNIWNLPGGAGVLP
>NC_011729.1|WP_012597899.1|538758_539232_+|TspO-and-MBR-like-protein
MLKPWMIIGAVTLLVALGGLFIRPKDIPWAKHLDRPNWLFFEPAIPFIWTVIYTCGAISALFVWQADPGSVKTWLLMGLYLLIEIVTTAYIPATLRSRSLGVGKVVGASGSVLGILLFFLVLPINQSAAFFLLPYLIWSPIGTYATEQMIELNPREV
>NC_011729.1|WP_012597900.1|539256_540042_-|SDR-family-oxidoreductase
MNSTVLITGASQGIGKATALLLAKKGYNLALAARNSERLEAVTQTINNQGGKAIAIPTDVTHAQQVESLVKKALDHYKQIDILINNAGICMTAPMEESTLENWQQVMNVNLWGYVYTIQALLPHFLAQKRGIIINVGSIGGKIPLPNMTAYCTSKYAVTGLTETLRLELEPKGIQVCCVHPSVTNSDFLERAIFNSDTRKKQMEETLKTAIASQPEDVAKTIVEVIEHPKPEVMVGSGVMLNTIYNFVPRLYDWVVKQSSQ
>NC_011729.1|WP_012597901.1|540181_541333_+|magnesium/cobalt-transporter-CorA
MSKSLPSIHAENFEDDLFDYYYNQPGTMPGTLTIDSTAQSVEIVLINYDSHQANRLTNLSLEDCLPYIENSSVAWMDVLGLGDEELLRKLGEILHLDRLALEDIVNVPQRPKVEENLQYLLIITQMVIPKEKGKGFWQEQVSLVLGKDYVVTVQEEPQRDCFNLVRDRIRHNKGIIRQRGADYLTYALWDAIIDTFFVVLETYRERIEDLEEEVAFKATHKTLNKIYKMKRELLALRRAIWPQREALNSIIKERFSLISEEVRRDFRDCYDHAVQIIDLIEVYNELLGELMNVYMSSYANKTNEVMKILTVISTIFIPLTFIAGIYGMNFDTEKSPWNMPELEWYWGYPACLSVMLFIAVSLIIFFWRRGWFKDMTKVKQPNS
>NC_011729.1|WP_012597903.1|542032_543355_-|serine-hydrolase
MTNKTLNKRRQNSSIVIRPVSDTSKPESSETQIKPEIIIPKRFERNLKPRSSQKRGSSKVVTSSGLYALRLLILGIGLSAIAGTVLTVFDPTVITEFLATKLNLPQLLPSPDSQDPPETEPQSEPSPVASPVGVTLSEKLPSLEKKITDLAAKYPKLQPGSFFVDLDNGAYIDVNGQAPFSAASTIKIPVLVAFFEDVDAGKIYLDEELVMTKDVIGSGSGDMQYQPVGKKYSALETAAKMNIISDNTATNMLIKRLGGKEALNERFKAWGLTQTVINNPLPDLEGTNTTSPRDLAYLLARVNQGEILSLRSRDRLMGIMQKTKTRTLLPQGIEKDAIIAHKTGDIGTVLGDAGIIDMPTGKRYVGAVLVKRPHNDYSARTLIQDISRTVYQHFKWYIPRPKIEPQITNQPSPEASPQASPQASPQPSPQPAPSPSNPPI
>NC_011729.1|WP_012597904.1|543439_544201_-|RNA-methyltransferase
MSQTPLEEIKIILVEPAGALNVGSVARVMKNMGLKRLILVNPRCDPFSDEAKRMAVHGQDILEQLQLVNSLPQALTGCQRAIATTSRMRTLPTVLETPRDALPWLLDSGVKGALIFGPEDRGLSNEELNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQATLTPVAKRKSEDESASLEDLERYYQDLETLLLKIGYLYPHTASARMEKFRRMYYKANLNREELAMLRGILRQMNWAMQHLAKIESHKNPEQ

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Crispr_ID: NC_011729_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_5

684808-684891

Orphan

Consensus_repeat	Method
AAACTTTAACACCACAATCAATGGCTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_5

>merge|NC_011729|5|684808-684891|CRISPRCasFinder
AAACTTTAACACCACAATCAATGGCTCAAATTGTAGGATGCGTTCCTAACCCATCAAAACCTTAACACCACAATCAATGGCTCA

>NC_011729|5|4|684808-684891|CRISPRCasFinder
AAACTTTAACACCACAATCAATGGCTCA	AATTGTAGGATGCGTTCCTAACCCATCA
AAACCTTAACACCACAATCAATGGCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012598032.1\|691130_691856_-\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	unknown	unknown	gnl\|CDD\|223704
NC_011729.1\|WP_012598038.1\|697259_697937_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_011729.1\|WP_012598019.1\|675797_676763_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NC_011729.1\|WP_157867529.1\|689933_690905_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|224868
NC_011729.1\|WP_012598023.1\|679829_680909_+\|DUF3326-domain-containing-protein	unknown	unknown	gnl\|CDD\|371736
NC_011729.1\|WP_012598022.1\|679638_679830_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598036.1\|694776_695085_-\|TIGR03792-family-protein	unknown	unknown	gnl\|CDD\|274785
NC_011729.1\|WP_012598028.1\|685206_686538_+\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_011729.1\|WP_012598035.1\|694418_694766_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598020.1\|677076_678945_-\|cyanophycin-synthetase	unknown	unknown	gnl\|CDD\|237586
NC_011729.1\|WP_012598037.1\|695310_696942_-\|DUF3352-domain-containing-protein	unknown	unknown	gnl\|CDD\|371750
NC_011729.1\|WP_012598034.1\|693736_694051_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370478
NC_011729.1\|WP_012598029.1\|686600_689219_-\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227922
NC_011729.1\|WP_012598025.1\|681506_681956_+\|DUF3531-family-protein	unknown	unknown	gnl\|CDD\|371866
NC_011729.1\|WP_041237633.1\|682700_683903_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_011729.1\|WP_012598021.1\|679161_679602_+\|ATP-dependent-zinc-protease	unknown	unknown	gnl\|CDD\|226553
NC_011729.1\|WP_012598024.1\|680895_681486_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NC_011729.1\|WP_012598027.1\|684053_684728_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_011729.1\|WP_041237632.1\|682191_682434_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598033.1\|691895_693653_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012598032.1\|691130_691856_-\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	5.74317e-88
NC_011729.1\|WP_012598038.1\|697259_697937_+\|DnaJ-domain-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	9.27451e-29
NC_011729.1\|WP_012598019.1\|675797_676763_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	1.90816e-17
NC_011729.1\|WP_157867529.1\|689933_690905_+\|nucleoside-hydrolase	gnl\|CDD\|224868	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism].	5.13047e-79
NC_011729.1\|WP_012598023.1\|679829_680909_+\|DUF3326-domain-containing-protein	gnl\|CDD\|371736	pfam11805, DUF3326, Protein of unknown function (DUF3326). This protein is functionally uncharacterized. It is about 300-500 amino acids in length. This family is found in plants and bacteria.	0
NC_011729.1\|WP_012598036.1\|694776_695085_-\|TIGR03792-family-protein	gnl\|CDD\|274785	TIGR03792, conserved_hypothetical_protein, uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown. [Unknown function, General].	3.139e-40
NC_011729.1\|WP_012598028.1\|685206_686538_+\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	2.19302e-55
NC_011729.1\|WP_012598020.1\|677076_678945_-\|cyanophycin-synthetase	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	4.18541e-114
NC_011729.1\|WP_012598037.1\|695310_696942_-\|DUF3352-domain-containing-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	4.42328e-169
NC_011729.1\|WP_012598034.1\|693736_694051_-\|hypothetical-protein	gnl\|CDD\|370478	pfam09421, FRQ, Frequency clock protein. The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa. This protein has been shown to interact with itself via a coiled-coil.	0.00696464
NC_011729.1\|WP_012598029.1\|686600_689219_-\|NACHT-domain-containing-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	6.09076e-34
NC_011729.1\|WP_012598025.1\|681506_681956_+\|DUF3531-family-protein	gnl\|CDD\|371866	pfam12049, DUF3531, Protein of unknown function (DUF3531). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 149 to 199 amino acids in length.	5.31692e-96
NC_011729.1\|WP_041237633.1\|682700_683903_-\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.57147e-115
NC_011729.1\|WP_012598021.1\|679161_679602_+\|ATP-dependent-zinc-protease	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	3.32439e-41
NC_011729.1\|WP_012598024.1\|680895_681486_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.65051e-13
NC_011729.1\|WP_012598027.1\|684053_684728_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	4.10736e-33
NC_011729.1\|WP_012598033.1\|691895_693653_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	0

>NC_011729.1|WP_012598027.1|684053_684728_+|TVP38/TMEM64-family-protein
MLKAKRNIILLLLICIVVTAIGIYFLGALKPEQIQLWLTKMGIWAPIIYIILYTIGTILILPSTPLNLSGGALFGVGWGTLWTTVAALVAAVVSFGFTRTIGRNYIAQKLAGRWEAIDAEMRQGGLFYMFAIRLLPIIPYGIVNFAAGLTSIRFRDYLIGTTLGTVPGILPFVMMGAGLQALSSGNIFPLTVAFTLTGILVGVATWYRRRRQFPSQLQNKSNKK
>NC_011729.1|WP_041237633.1|682700_683903_-|PDZ-domain-containing-protein
MKLSRSMRQLSTHLIALLLGVLLCFNGFQALSSVASPLAQANNSSVTPADLARIPPSTSSDSFVAAAVATTGPAVVRIDTETVVSRRLDPMFDDPLFRQFFGEQMIPQTPQQQRITGQGSGFIVDRSGIILTNAHVVDNADKVTVTLKDGRTFDGIVRGSDDVTDLAVVKIDPQGEQLPIAPLGDSTQIQVGDWAIAVGNPVGLDNTVTLGIISTIGRSAAKAGIPDKRIDFIQTDAAINPGNSGGPLLNAKGEVIGINTAIRADANGIGFAIPINKAKSLQDTLAAGQEVPHPYIGVQMVNLTPQVAKESNRNPNSPFLIPEVEGILVVQVLPSTPAERAGIRRGDVILKINNQRIKDGAQLQSFVENAGINQDIRLTVQRGDRVFDVTVKTTQMARNS
>NC_011729.1|WP_041237632.1|682191_682434_-|hypothetical-protein
MSRYLFPQRVSYAPSSQLLKITQNHLKYNFNNFFAIQNPTEDLLFTNLEVETIKSFFPSAQVLAYQTVSKTALKDSQNLL
>NC_011729.1|WP_012598025.1|681506_681956_+|DUF3531-family-protein
MEVEFREFDPFDLWIWLEFDTIPSPMEKQYLEEVFNSWFYLGKLGGFNAENLQVQDTGIDISYMDYDTSATESSLMSLMHNMSELEYRGTWGRCWFDLGTSDLMALDVLINVLHQLSREYVEIKRLIIGGQNEDWKAESKKMSMFLEEN
>NC_011729.1|WP_012598024.1|680895_681486_+|CPBP-family-intramembrane-metalloprotease
MTNSNNPDLEPLTRTQILVVMGVTAIILLVVAKVWQYLGSITIVEIKFNVQALLFGLGIAAGIITASSIIYRLWPAYRRSADAYLELVIRPLIWPDLIWLGLLPGLSEELLFRGVMLPALGGNLIAVILSSCLFGILHLSGTQQWPYVVWATIVGFALGYSILITGNLLVPIIAHIITNLVASFLWKAGQGKSVHH
>NC_011729.1|WP_012598023.1|679829_680909_+|DUF3326-domain-containing-protein
MTKPYTVVLIVPTGIGAAIGGYAGDALPVARAVSSICDRLITHPNVLNGAQLYWNLPNTYYVEGYGLDQFAQGNWGLKPVHQNRVGLILDQGIESDLRLRHLQAADATRATLGLNLTDYVITDAPLQVELRTAESGASWGTIGNPGSLLRAAETLIEQARAQAIAIVARFPDDPDSLALQNYRYGCGVDALAGAEAVISHLIVRSFKIPAAHAPALMPLPLDENISPRSAAEELGYTFLPCVLVGLSRAPQFILKTDNYSPVSETIWSDSVDAVIIPANACGGSATLSFTAQNSLIIAVQDNKTQMQVPPEALGIKGIRVNSYIEALGLLVTHRAGISSDALRPNLSSLHCLSQTRDQF
>NC_011729.1|WP_012598022.1|679638_679830_+|hypothetical-protein
MTTHFISAEIDLQETPLKLHQAIESELQKQGEPLRWAITEVDTDKQTAHVEAIVTTQLTVNSD
>NC_011729.1|WP_012598021.1|679161_679602_+|ATP-dependent-zinc-protease
MKKPELLVIGWREWLNLPELGIKHIKAKIDTGARSSALHAFHIQPFQVQGKDMIRFGVHPYQRNNHDTITAEAELLEWREVRNSGGVAQLRPVIKTQVELGEQQWLIELTLTNRDVMGFRMLLGREAVRKRFLVDPSRSYLYHKDS
>NC_011729.1|WP_012598020.1|677076_678945_-|cyanophycin-synthetase
MSKSDYDSFYLSHFKYFLGPNPYLNTGALVFDFSISAPSKVLPLEDYHQEISQRFPQLESYPLTSYGELFAQTVAEVNQLEMDLHLNLYSIKDERIAVQSLDYQTSIEVVDLVWDWWEAITKDQRFNYQFRLKKAQETFRFSPYGGPSSYALIESAYKRKIPTFYLPEERLTQYGYGKYQIRGVSTTFNSDSHVDLDFTTVKDDCKGFLANCGFPVPQGYVVYSLREALNSAEDLGYPVVVKPVIGHKGIGVTANIENDKELEFAYDRAVDASPNQRGQIIVEKYIPGADFRLLCVGGKFVAALERRPSYVIGDGRSTIYDLIEDENESPARQDTPTSALSPILIDKSLENYLEQQGLSLDSILERDRLVYLRKVANISAGGVSINVTPTIHPDNIILAEEIAQYFHIVCFGIDVISTDLSRSWKEGDFGIIEINAAPGIFMHLKPAIGDSIDVPGKILDYLFVSESTSRMPIITFNYLPKQTLLEIVNLVLQSHPHWTVGSICQDGMWINKSPKPLPKDYNTGVLTLLRHPKLDLLIAEYSQDIFETEGMLYEGSDLIILDEPTETEKILARDLRKEGILITKQENQVLIQRAEEQENYQLDELTSLSNLYEKQIYHLFER
>NC_011729.1|WP_012598019.1|675797_676763_-|polysaccharide-pyruvyl-transferase-family-protein
MNITPQSIFFQYLEKIQKSKIFFVPTRGNPGDILIRLGAEYALQKANCSITDNLADAEYIIINGGGFFNPYWGDGQNFGNNLLRYYRQNAPNTPLIMAPQTFKFTNDILQEFLSICQISSASIILFARELYSYELLSKLNLPNNVEIKISQDLAFELKDSTFIKDYKKKSSEEYCLLCMRLDKESSFSLMCQLNDYRKKAKNLKLIQPITTKIFAKMQRLTGRWLGNSLYNDIINQFGFTPLTRLHKDIAYTSSLDEYCNAITKSAMIITERLHVGILGYLLNKPVIFISNPNYHKIRAVYEYSMKGTDLFPILYELSSKK
>NC_011729.1|WP_012598028.1|685206_686538_+|TldD/PmbA-family-protein
MLTLLTHEEALSLIESVIKQSEAEGVFVSLGASESALSRFSENQISQNINKTNFTLNITSYFGKRSACVSTTELDPEAITQTLRRSETLALVAPEDPEWVSLLEPQDYDPRLPAFDLMTAELSPLERGEKVKLMCDLCRQAGVEGSGTLSSNVGLQAVGNSLGLRGYYCTTDANFSITARVNTGSSWSSHSAWGIEQLPIATTTEKVIERALASRNPQEIKPGVYPVVFDAAAFAELLSWVIWNLDARAADEGRSFMSRIDEEGKPAGNRLGEALFSPLVQVSRDPGHPLLQSGTFFEDGLSNSYLEIIRDGIPQNLSYSRYWAQEQGKQPTGGMFPMVMKGSDQSLSDLIAQTERGILVSRAWYVRYVNPRTLEVTGMTRDGTFWIEDGKIAYPIKNLRFNQRLPEMLRDVDGLTSIQRFGSRVVPGVRVKAFNFSSVTDSV
>NC_011729.1|WP_012598029.1|686600_689219_-|NACHT-domain-containing-protein
METWIEWDNFIKIKATEKKFTPEQSKCFQKFFKKDNIDFEQNKFNSPREEIDKKLQITEDDRKKRLTAIYEKFKKDCEFPKNNKYKYLIEHLKKKYQEWISQINQQPSSSTTPTETPETKINWHEICEKILQQQKRLTTNPLLHDNEKAKKEYPDVYIELGLVHRKKRENPEPVDNSQQGSKIYRPKEPERIYSQQQFFSEFLDKRKAKRIAIIGEPGAGKTTLLQKISDYVLKENLGLPIWISLSELTTTENLDNIEEYIFDLLTRHFSPLKRETAKQELATYLETNLGNLWLLLDGLDEVTTVNNLLSKINQQLGGWLSNSRVIVTCRFNLWDGDLNYLSDFETYRLLDYEYPQQVYEFIDKFFKVKSDLTPPIPLPYEERGKLATRLKTALNQPEKASVRDLIRNPLRLTLLCYFGLDREILPDTQAQLYDFYRDYFYKWKPDRFLLTHSEKRELNEALGKLALDAIKEKKSRFLLNREFVTQELGDKWFEKATQIGWLNQLGDYYAFYHATFQEYFATRAIADWDYFLPRLHQDKPIEGKEYRIFDPKWKQVILFWLGREDIDTQEKEAFIDALINFNDGCNHIYGYRAVFLAASGVGQFQECSKAKEIVETIVRWGFGFWDEEKQGWTIYFDPIAQTANEVVTQSIQNLVILQLIGILNSCEDEYSCWLVADSLGKIDPGNPKAISTLIQVLKNCKNRLVVLMAADSLRKLDPTNQEVFSTLIRFLISSKYEWGCQLAVEILRKIDPTNQEAIAGLIALLFECEDECIRIRTAQSLKIDLGNQETISGLITLFNSSQEESTLMKVTYSFKKIEPGNKYLTLVVSRLKPNLTNTVYQNNFDLYENSFNILWQCAANLPYPDFYHAWHS
>NC_011729.1|WP_157867529.1|689933_690905_+|nucleoside-hydrolase
MPLIVDDDGSQDGMTALVYLLQNPKFEVKAITISQGIAYPKIFGTNLMRMLARLGKTGIPVGVGSETPLEGNNSFPEQFREESNSFWSPFVSLPNQALETLDSRDAATLIIDTIQQSPKPVTILATGSLTNIAEALRQEPTIINNIASLHIMGGAVFVPGNLREHLDPMIKQNQVAEFNIWVDPIAAQEVFKAASAGLKIILTTLDATNQVGFSRGDQQAWKATGTPEGIIASEFLDFALSVISGNDPLIPNPVWDLVAAINLSEPSFCNPVPLHIQVDTMGKPNTTQGQTVVIENQPPNTYVCLNPSFNNLKFGTNEIFTNE
>NC_011729.1|WP_012598032.1|691130_691856_-|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase
MKNRRSTGLTDPGLIRSVNQDSYYIDPEGRFFIVADGMGGHAGGQEASQIATKRIQTHLEDHWDSDTPSEELLQEALQQANKGILEDQSDHPERADMGTTAVVVAFRKDESWYAHIGDSRLYLFRDSQLRQITEDHTWVARALKMGDIKPDQAKVHPWRHVLFQCLGRKDLRQVDVYPLEVQTGDWLLLCSDGLTEEVSDDLIAEILNSKKSDKDIAKQLIKSAKEGGGSDNITVILVAQE
>NC_011729.1|WP_012598033.1|691895_693653_-|AarF/ABC1/UbiB-kinase-family-protein
MTALSENANNPYGYSTTPVTTSSGGRPEAAKTSYRWNQENYSVNRRRFDIWRFVLLLLLKLTLNGKKWSYIGGYTDEKFAARRKKQAVWIRESLLDLGPTFIKVGQLFSTRADLFPSEYVEELSKLQDQVPAFTYEQVEKIIKADLGKPIAKLFRSFDPSPLAAASLGQVHKAQLNSGEEVVVKVQRPGLKKLFTIDLAILKRIAQYFQNHPKWGRGRDWMGIYEECCRILWQETDYLNEGRNADTFRRNFRSADWVKVPRVYWRYTSPQVVTLEYLPGIKISHYEAIEAAGLDRKLLARLGAKAYLQQLLNDGFFHADPHPGNIAVSPDGSLIFYDFGMMGKITSNIRADLMETLFGIAQKDADRVVNSLIALGALAPTNDMGPVRRSIQYILDNLMDKPFEEQSVTAISEDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPEFNFMEVAQPFAMQLMSNDVGNYSSTILDELGRQAAQVSNTALGLPRRIEDTLEKLERGDIRVRVRSLESERTLRRLGAIQLGTNYTLFICSLMISATLLFVNGYVKIAVVVLLVAIFPAWALFRLLRQLDRLDRMF
>NC_011729.1|WP_012598034.1|693736_694051_-|hypothetical-protein
MSKPVIHAFFLGRALAEVISEKVEETFTNALSEIGKFDAETRENLRQFIEEVQFRADRQASQSNTDGSSVGYSNAQGDLQETIDELRAEIARLKAELKNYRESV
>NC_011729.1|WP_012598035.1|694418_694766_-|hypothetical-protein
MATCSRCHQLVDNQAVRCPHCGNQLKGFGHPGIPLYQAEKDTFLCESCLYHEDDSCNFPQRPYAKTCTLYQDKHQPLIHESPKPSLSKNVRLWVERNRWLILLIGLIMVSIALAI
>NC_011729.1|WP_012598036.1|694776_695085_-|TIGR03792-family-protein
MVIEWLKFKIDPESRETFIEKDNQIWTAALAPYPGFLGKEVWINPHIPDEIVLVIHWETRQQWSAVPNSVLEETERQFREEMGKDQYQLVETKEYQVRKFIN
>NC_011729.1|WP_012598037.1|695310_696942_-|DUF3352-domain-containing-protein
MTTTNSKKSGCGCFPILAVITLAAGGIYYWRGELLGKKLTPLEVAKAIPEEAFLTSYITTDAQVWSQLSKFGTPEAQKVFSQKIDQLKDELSSDNINYVEDIQPWLGGVMLAFLPSQTGQDSPMLIVAGIQNKLKAKAFQDKLKNQSQTSTTKTDYKGITITTIAHQNDSPVSVAYIGNYLILSDNIQTVKEAIDTLKGEPSYAQKSGVKQALSQSLTLKNSLGQIYITDYQTLIGQGLQNPYPNSSIPLDPWKQLEQIESIVVGVGIEEEGLRFQAITKLNSSANQPVVNSNPGKILEKFPAQTFAFMSGQGIKEGWSNLVTQAQTNQDLQLGIDQIRQGFRMVNLDVDRDIFSWMDGEFAIGMMFTPQSSIPQVNLGGMMVWETSDRPTAENTLNQLNQIVRLSNISVQSNQVNGIKVTDWKTPPQTLLLSYGWLDRDSLAMTIGMPFTTATNVKANSSLAQSSNFQEITQSLPKKNLGYFYLDFKGAVNEMEKIAQQQGLPLEPDSIAILKSINGLAATAIISDQTTNQLDMILGLKSSQ
>NC_011729.1|WP_012598038.1|697259_697937_+|DnaJ-domain-containing-protein
MKELERYYDMLGLELGASLEEINQAYKDLAFIWHPDRLPKDNPRLLEKATAKLQELNLAREQLRLNYLHRHEPSPTPPKKPPSYPSSPIYHPTEERYHQAKRPYYRDYRQADFRGANLREKDFSGRNLAQADLSHADLTDSFLHKINLEGANLYRANLFRANLLEANLRGANLQQTHLIGADLSGSDLREADLRGAKIGYGKRIMVKLTGAILTGAILPDGSIHR

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Crispr_ID: NC_011729_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_6

873485-874248

TypeIII

Consensus_repeat	Method
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CRISPRCasFinder
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CRT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	PILER-CR

10 spacers

cas14j,cas10,cmr3gr5,cmr4gr7,cmr5gr11

The CRISPR arrays of NC_011729_6

>merge|NC_011729|6|873485-874248|CRISPRCasFinder,CRT,PILER-CR
ATTATTTGTTATTCTTATTCAACCCAATAGGTAGAGTCCTCACAAAGATGGGGATAAGGCAAACGTCGGAAATCCGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGGCAAACAAACAAAAGAAAAAGCCCGTGACAATCATGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGGAAGGAGGTGGCGGTGGCGGTGACGGTGATTTCCTGAGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGGCAACCATAGGAATAATCATGACTGGAGGCTTAGAGGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGCACTATGAAATGTATAGCAGGTTGGGCGGAGTATCTGTCGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGAAGCGCTAATTTATTTAGCAAGCAAATTAACCAGATTCTGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGTCTCGATCAACAAAAAATATCTTCCCAAGCTTGAAGGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGATTACACTCAAGCAGAGCAGTCTTTAATAACTTCAGGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGCCACAACCTCAACCCCTTAATTCTGAAGATCCTTTGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGGATTTAGAGAGAGTAGCGAAAAAGTTTGGATATGTCAGTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG

>NC_011729|6|5|873485-874248|CRISPRCasFinder
ATTATTTGTTATTCTTATTCAACCCAATAGGTAGAG	TCCTCACAAAGATGGGGATAAGGCAAACGTCGGAAATCC
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GCAAACAAACAAAAGAAAAAGCCCGTGACAATCAT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GAAGGAGGTGGCGGTGGCGGTGACGGTGATTTCCTGA
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GCAACCATAGGAATAATCATGACTGGAGGCTTAGAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CACTATGAAATGTATAGCAGGTTGGGCGGAGTATCTGTC
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	AAGCGCTAATTTATTTAGCAAGCAAATTAACCAGATTCT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	TCTCGATCAACAAAAAATATCTTCCCAAGCTTGAAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	ATTACACTCAAGCAGAGCAGTCTTTAATAACTTCAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CCACAACCTCAACCCCTTAATTCTGAAGATCCTTT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	ATTTAGAGAGAGTAGCGAAAAAGTTTGGATATGTCA
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG

>NC_011729|6|1|873485-874248|CRT
ATTATTTGTTATTCTTATTCAACCCAATAGGTAGAG	TCCTCACAAAGATGGGGATAAGGCAAACGTCGGAAATCC
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GCAAACAAACAAAAGAAAAAGCCCGTGACAATCAT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GAAGGAGGTGGCGGTGGCGGTGACGGTGATTTCCTGA
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GCAACCATAGGAATAATCATGACTGGAGGCTTAGAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CACTATGAAATGTATAGCAGGTTGGGCGGAGTATCTGTC
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	AAGCGCTAATTTATTTAGCAAGCAAATTAACCAGATTCT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	TCTCGATCAACAAAAAATATCTTCCCAAGCTTGAAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	ATTACACTCAAGCAGAGCAGTCTTTAATAACTTCAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CCACAACCTCAACCCCTTAATTCTGAAGATCCTTT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	ATTTAGAGAGAGTAGCGAAAAAGTTTGGATATGTCA
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG

>NC_011729|6|2|873560-874248|PILER-CR
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GCAAACAAACAAAAGAAAAAGCCCGTGACAATCAT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GAAGGAGGTGGCGGTGGCGGTGACGGTGATTTCCTGA
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	GCAACCATAGGAATAATCATGACTGGAGGCTTAGAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CACTATGAAATGTATAGCAGGTTGGGCGGAGTATCTGTC
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	AAGCGCTAATTTATTTAGCAAGCAAATTAACCAGATTCT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	TCTCGATCAACAAAAAATATCTTCCCAAGCTTGAAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	ATTACACTCAAGCAGAGCAGTCTTTAATAACTTCAG
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	CCACAACCTCAACCCCTTAATTCTGAAGATCCTTT
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG	ATTTAGAGAGAGTAGCGAAAAAGTTTGGATATGTCA
GTTTCCAACAATTCCTATTCTACCCAATAGGTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012598192.1\|883528_883966_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350263
NC_011729.1\|WP_012598180.1\|870554_870965_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041237639.1\|870093_870555_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NC_011729.1\|WP_157867534.1\|865756_866380_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NC_011729.1\|WP_012598173.1\|861223_861883_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598188.1\|880720_881146_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NC_011729.1\|WP_012598178.1\|868523_869963_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_011729.1\|WP_012598191.1\|883262_883532_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598187.1\|879863_880721_+\|hypothetical-protein	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_011729.1\|WP_041237985.1\|881255_882941_+\|RAMP-superfamily-protein	unknown	unknown	gnl\|CDD\|213662
NC_011729.1\|WP_012598175.1\|863244_865155_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_011729.1\|WP_012598182.1\|872902_873307_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_011729.1\|WP_012598193.1\|885723_886029_+\|DUF2499-domain-containing-protein	unknown	unknown	gnl\|CDD\|371197
NC_011729.1\|WP_012598186.1\|878009_879134_+\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_011729.1\|WP_012598194.1\|886048_886345_+\|DUF3593-domain-containing-protein	unknown	unknown	gnl\|CDD\|371929
NC_011729.1\|WP_012598195.1\|886905_887952_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
NC_011729.1\|WP_012598185.1\|875979_878022_+\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_011729.1\|WP_012598172.1\|860186_861212_-\|polyprenyl-synthetase	unknown	unknown	gnl\|CDD\|223220
NC_011729.1\|WP_012598181.1\|871332_872835_-\|transposase	cas14j	-	gnl\|CDD\|223747
NC_011729.1\|WP_012598174.1\|861892_863020_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012598192.1\|883528_883966_+\|PIN-domain-containing-protein	gnl\|CDD\|350263	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins. Mycobacterium tuberculosis VapC26 cleaves 23S rRNA in the Sarcin-Ricin Loop, it is inhibited by the cognate VapB26 antitoxin. This subfamily belongs to the VapC (virulence-associated protein C)-like nuclease family of the PIN domain-like superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.6734e-12
NC_011729.1\|WP_041237639.1\|870093_870555_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.14431e-32
NC_011729.1\|WP_157867534.1\|865756_866380_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.2168e-43
NC_011729.1\|WP_012598193.1\|885723_886029_+\|DUF2499-domain-containing-protein	gnl\|CDD\|371197	pfam10693, DUF2499, Protein of unknown function (DUF2499). Members of this family are found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins.	1.47511e-43
NC_011729.1\|WP_012598178.1\|868523_869963_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.75567e-38
NC_011729.1\|WP_012598194.1\|886048_886345_+\|DUF3593-domain-containing-protein	gnl\|CDD\|371929	pfam12159, DUF3593, Protein of unknown function (DUF3593). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 98 and 228 amino acids in length. There is a conserved LHG sequence motif.	4.08404e-46
NC_011729.1\|WP_012598187.1\|879863_880721_+\|hypothetical-protein	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.65842e-19
NC_011729.1\|WP_041237985.1\|881255_882941_+\|RAMP-superfamily-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	0.00942675
NC_011729.1\|WP_012598175.1\|863244_865155_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.00119362
NC_011729.1\|WP_012598182.1\|872902_873307_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	9.07212e-49
NC_011729.1\|WP_012598195.1\|886905_887952_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.28263e-144
NC_011729.1\|WP_012598185.1\|875979_878022_+\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.14089e-13
NC_011729.1\|WP_012598186.1\|878009_879134_+\|hypothetical-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	7.16142e-08
NC_011729.1\|WP_012598172.1\|860186_861212_-\|polyprenyl-synthetase	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.41682e-28
NC_011729.1\|WP_012598181.1\|871332_872835_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.38688e-34

>NC_011729.1|WP_012598182.1|872902_873307_+|IS200/IS605-family-transposase
MTQQYRRKSHTVSLVNYHLVWIPKRRKKVLMGDVEKRLRQIIWDVALEKEWNIIALEIMPDHVHLFINVPPNIAPHDVAKAIKGRSSRLLRQEFPHLLKLPSLWTHSYFVSTAGNVSSETIRIYIEEQRHHDTT
>NC_011729.1|WP_012598181.1|871332_872835_-|transposase
MLLGYLYKLRPNQEQSAKIDSWLDLLRSTYNWSLADRINSYHQSFIQGEYCDLRSKAVASPLTCCIVKGGATGEPWKDNGKKRSVCEMQMTSLPELKKARPWYKEIDSTVLQQNLKRLEVAYKNFFSSNRKFPKFKNCSTFRSFTYTVGVKLKGNKIYLPKLGWIKYYNSRPLPDGFKIKSVTVRKKSDGYYVSIRIEDVSVPSFPIKPVEEIKTVIGLDMGLGKLIYCSDNSAINNPKFATNPKTKRLQRIIQRRVSRKKKRSNNRKKAQKKLSLFQHKIAQKREAYQWQAAQKIVNSSDAIAVEDLKISNMVKRCKPKYDKEKGRFLKNGQSAKRALNRLILDASWYSLIQKIEYLAAKSGKIVLKVNPKHTSQECSKCHHIDSSNRKGEKFLCVRCGHVDDANFQACLNIKNKAINQYQLKIKKRTFSQKKCELIKVGRDLPEPKQLNLFQTSTSELTGGKRRKHSARNGKQNVPGNLGKQLNLFEQENNYRASDTL
>NC_011729.1|WP_012598180.1|870554_870965_-|hypothetical-protein
MVNLIIESTHKPWMAVYLKILALFYLYGAAVHCANVFGFGELAWVDMPFSWKFGDISYGILDILAFIGLWLKSRWGLGIFGLIVISQLVLYVGFPQWFVLDREDQQDLWNLVMFHLVTLFIFFGLLLSKNTASPQK
>NC_011729.1|WP_041237639.1|870093_870555_-|GNAT-family-N-acetyltransferase
MTWEIRQATVQDFSQIYQLIKQVFEENTKYEMTEEGQRNFLQFIQPSQMEFRYQNGAIFWVCEVESQLVGMIEFAYYNHIYLYFVDKNYRGKGIGKALFNQVKKEIKGNITANSTEYALPIYLKLGFTQNGSVVTRNGIRAYPIIYQKTVDNE
>NC_011729.1|WP_012598178.1|868523_869963_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MLKLNRIKNSSVKWQLLSKVTLLTLLGTTTIGCQNLWDKQVDAQPQSQQPENTAIAVDAAIAKSGNLREDIEYTGNTAPVREVSLRSQVEGQLQELTVDVGDEVKQGEILARLDDKLLLSEVSQAKAQKAAQRSQVVQAQSQVNDALIRVEQARLELQQAQADITRLQASLNATVEQARLEAQQTAADAARLRLLAQEGAIPEQQAEQAETEAKQAQQILLNQQASAEQQISQAQTAAQTAAQILRSAEAQVKIEQQQVSTAQAQVEAQRELMTQAKTRQSYSILTSPVTGKVLEKVSEPGNLIQPGTEILKLGDFSRVKVIVEVSELQRSKIKTGQRVDVKLDAFPQENFLGIVTRISPAADPTARLIPVEITISNPEGKIGSGLLARVSFSQGEQTHIVVPETALQDDSTIYIIQENTQNPTVKARSVVVGNKANGQVEILSGLSEGEHYVVRSSEPLNENQTVRLSILSEPSKPTL
>NC_011729.1|WP_157867534.1|865756_866380_+|phosphatase-PAP2-family-protein
MINTLLNKSLNQANKHLIWIGGTVGTLAIATGLLHYFKLDTAILLFLQKLHTPILDRIMLGITFLGEPGTLLLVCLGLIISPLTPKRKETTTTLSLATLGAVSLNYWLKIRFGRLRPALWRQIIRVRHYSFPSGHAMMSSVTYGFIAYLLSKQFPQRRTEILAVSSILIVAIGLSRLYLGVHWPTDVLAGYAVGLVWLSACIFFVEL
>NC_011729.1|WP_012598175.1|863244_865155_-|tetratricopeptide-repeat-protein
MTDQSHYQPSNSPELSLPQQYQNFIEQAITATLQGKILSKEQLYQMVVKEIQSGTGEIFERCLNERVRIAQEQLEHQTSEAKKAKISRQIRALDTIGGVWERWQKEKQDINIYSQASEDILQASPQDRFSILLQKLDLNQTNSLNRNQIKQLADSLTKTADSLNSSEEANQLHLFSRGLLKGLESFRNLENDLVSWIYQGGNKSVGFEGIPGSNSPWTIWAKRLDSPLPRHLFELQALNQPVTELAKTQNYQDISAWIELVIILRSLQQGLVNWFDQQPYSATWGKRLSNATLLTFAVIWCELSNGLQQATNLNSLTRQLLAKGCFQITLQILRTFAQRPDFPLYGGVFVSFWGDSLRDTLNYLSEPLRQIEGTQEKGRILTILGYSQRTLGRYEQANTFHQEALRIAQDAGDNLCQIANFNHLSRNSIAQKEYAIAINYSQRALILARQTGDRLGEANALANLGYSQVLAAQATEEISLEVYQQNISYLEQGLQLSERLEDHQSLALCYNSLGIAYLVINQPTVAYDYLEKAVKAAQLVRDLYLQGISFTYLAEAYYNLNQVERAVYNGCLGMYLLERIGTKEWRGAAGLLTVIQGRVGQEKFQSLIVQYRPKLIEIIGVEGVDHLPQLLKQYQE
>NC_011729.1|WP_012598174.1|861892_863020_-|hypothetical-protein
MERVEVQKVPSSTSPVTSQIKRVQSHDHSEEPEGELQQDKTFDLGEQLERSARLSHNLANISVTTPNSSTPNGVAIQSKTEMSIQPLWRNISSISGSATQNSQLFRQKITQFQQENTTSKIAAKQQQLHHNPKSTPVTLKDSSSTIRRCASNPSFSPSLGRKNTNLKGTYGEFKVEHGLDKAPTKSEYGEYYIKIEMTPNDKTGSSEIGFLQTARRGTSAGNWSTKASDAGMTKERAERTTKSGWRVDRADPGKDKTPLYGMTKNKSGKVVSRGNAQTGKFKGSNPWMWDTPGVLDPTAMQFVATAIDVSTGTSFGAVLWGFEYDSSSSHYQEQTPTLLSSGNALLKQRDEAIDKWNKSVATPGSGIDQAPTITE
>NC_011729.1|WP_012598173.1|861223_861883_-|hypothetical-protein
MLIRNLLIILSVGITLGLGGFWLSNSQAILPNNYTHTTLLAQETMLKKLKSALDKCIKDSRSYFSLEGLKERETVKNIIQQIDDPFWEKLNPLENFFALEIVPEIKQKASPNTVAQAYCTALEQLPSDWWGLPGGTPSESGEHLLKIPNIQACLSQLLNNTNSLNYLDGEARTLTKVHQWQISDLAASFLLTLSDQEYSADASVEERNIIKKQLQNSNQ
>NC_011729.1|WP_012598172.1|860186_861212_-|polyprenyl-synthetase
MNWLTPLYPIIKDYLLAQIPPQWTQLYQLTDSWFQTEIIPEIIPVVAACKAVGGDPNQTIPLCAALLASAISIRILDDLQDQDKPNALHHVIGSASALNYADTFKTLAFKIIGDLSLKNKADGSPLYQAFIDGYFTLLAGQERDIQGMSRTWEDCWQTIEMKTGYSYAMATALGAMIGTNHQEWIQICKIYGYHLGLAIQIFNDLEGIWQPVGKSDLHRGKITLPLLYGLECSHPDREELLSIIEDHQIIVKSQRIKEILDKIEAKNYLIWMALQHRDCALQIIKVFPDEEGKKALEYRFTAMYGDLDQLLEPKEESELLKIENNTYQSMGLNLRNQLRQS
>NC_011729.1|WP_012598185.1|875979_878022_+|hypothetical-protein
MDKNSCTIVTFAPIQGFIEDSRKLRDLYGSSFLLSYLAKSICEAAKKEKYCVISPAPPVNVTQGTPHQIIIKGKFPQEIAQNEFNEAWHTIVTTCRYWIEDHLPNFNYCWKRDWNAWSNHAWEFFWINVEGENGEDFGQLIHRTKAKLIEEKRQRQWIGINWVGESSTLSGTDAIAFPQMSLINPKDWDYQTQKQDLETFYEDLSQAVGKAFIEYIQNNLNEPILQERYGKGFINFAANVYPRCNQTLQQKIIKRYGQRIIDLEEELSIPELVKRLITLEAIGTKAEIKLKEIPSTYRDLNRLNKDEKTENLEPDNRWTGWFLGDGDGVGNHLKNLSPESITKFSENMLNWGHKTLKTSLENTGQGRVIYAGGDDFFGIFYRTPPEPRFLKSLLNYLSQELLKIKPNLKEKVQLFKQEVKQKGLHKNINIPEQLKEGFKLIFQQKAEEINLKDCLEEAGLTLEEAKHLFSHPVLKPEECIQWFYQFNGNHQNTFWRKHGEPITVSVGFVWAAPGIPQRDVIQHCRITQEMAKKLGRDRIAIKILFNGGNYLQWSCPWVFLQGILSGYEDKKGGKNWSHFYQDIAILEARHAFRETEDKSLTHNSEIAIALFNFYFNNQENQVIDFENEQHLWNRKDENGKQISSGILGNREDYPDIKAQSRALNNWVINLAKVGFQLCLS
>NC_011729.1|WP_012598186.1|878009_879134_+|hypothetical-protein
MSIITEIDPKQQQTSAFKFNYLIAIKPLGLLYGSRGRFISPDNIVGRSGTSFPPVSPTLSGVFAAEYGQDNPCLKDLVVAGGFWAKSQDIQSFFVPTPLNILVNQEEIQPFKDCSLKWHTIKDKLTWDSTEQKWTKQQKTDTGKNHQSATWIKIDDWQKLQHWSIKSPLLVCESPWQELPHLHPGLEENERHTKRVEEDGRGSLFLENAVQLNPDVSLVYLSNQSLSLDLGKTGWYRFGGEGHIVEISCHELAETTQNLLTETITDQLALITPAVWGSNHLSYRDPKIFDNEQWRDIWKLKTLITERPTPFRYRLGGKGKNKRLSRGRYAIPAGTVYLLENPLNLPWLQWPESWFPVEGYSFKRWGCGLALPLK
>NC_011729.1|WP_012598187.1|879863_880721_+|hypothetical-protein
MYHKAYGIIETKAPLHVGASSGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRQKRFKWENENQDKSKELPKEYDENYWYGHQSIQEQQDGGTTEALVKFEYASLIWLPVFCPGQPVVWVSCPRLLERYQQIINLDDSLPKPYTGANNLRGRNIKGNHQILFFNLGFLEIEHKADLSKWIPKEISLPQDNLVVVGDNDIAQIHDMALYRQSRVKLLDDMKKVDTGSFFNVEALPEGSILIFPIALKETGWKPFEKLKNYPLYFGGLESIGFGRCEVVLGGEI
>NC_011729.1|WP_012598188.1|880720_881146_+|hypothetical-protein
MSWQSYDLDRKAQKLVLNALKREPKTLNQSYKMRMTCSYGLERFWGEHLRLQKKEPEKSIYWQETWDSLVEIMKKAQVEIPNDPVNVDSPTAIETMSKKLWDLDLDTQRISLAVLTQLCDCIVWWTQRYKGRHSDIDEEER
>NC_011729.1|WP_041237985.1|881255_882941_+|RAMP-superfamily-protein
MTIADAYKKVPMMYRAQVGDRSQLQYIKKDADSDIKFWTSEWIERTYPYPPSFTPDNQTRTITASFNWRFVTNGGQDDGIIRPVIGAKGYPFYPGSSMKGAFSRACTPIQRQRYCGKPTPDGDVEPGILRFHGGYPVDKSWQDNLIDIVHPQQCWQVQDDKKEGGAFAQISLYQPTLCFAISSTITLKDREWEIILDIWQKAISTGLGCRVSAGYGQPKKFIGNILYQTELKGTGIAAKLLDDSAEFRTNIFRAGIRGHALRVFGGLTDEKNAETVVEKLFGGTKNNGGTVGLLSMNFQQKYPGKELGTFGSDAWEVDTYDVEGCLNWGLTQTLPEEQEKALKQLIQALTRFGMVFGGFGKSWRRVDHRQFYPEYYAQKQQKPLIGCHWQWNGNRALIFDVKVYKLEQVSKFINEVQEIAKHWLKLQKITITSGQYATSWRESWHQEKVQVWGRIAENEDDCRAIKWLHQPYRKEDVNFGIKQGSIYKSLLTGQMSQIGRLWHRMYPVIRLLKDPKNPKKPIVRETPHYLELLTIFPDDSEQTEDFLAYLSSNLSKFEQLW
>NC_011729.1|WP_012598191.1|883262_883532_+|hypothetical-protein
MLSIQLDPETEAYLTEILSAEKTTSSELLKRLIYEHWLSLKPRQTLIERRGGHPQHLLQDAPSNLSLRENRKKAVSEYIKQRHQKIQSE
>NC_011729.1|WP_012598192.1|883528_883966_+|PIN-domain-containing-protein
MNYPPIILVDSSILVAYYSTNDDYHQPVCTFFERCTSQLITTVPCVTEVMYLLSSSYLTQNEFLNDLAQKLYECIPLLNQDFERIKQLNQQYADLPGDFADLSLVAISERLNIAAIVTLDDDFNIYRRYRKQPFERILLPNSNSF
>NC_011729.1|WP_012598193.1|885723_886029_+|DUF2499-domain-containing-protein
MHALSIPTWIIHISSVIEWIAATWLVWTYGDVTGDRVWRYLSYAMLPALVGALCACTWHFFDNSPSLNWLVTVQASMTVLGNCTLLAAAWWIWRSSQENMS
>NC_011729.1|WP_012598194.1|886048_886345_+|DUF3593-domain-containing-protein
MLPKDTLFALSLFPYLGFLWFLTRSGKTPHLALVGFYALLVFVAVTIPAGIYAKIHYGEQLANIDWLHGAAESFLTVSNILVALGFRQAIIERKKTSS
>NC_011729.1|WP_012598195.1|886905_887952_+|Fe(3+)-ABC-transporter-substrate-binding-protein
MNKITRRVFIGAGAATTAVVASQLSKLTIITAQTRELNLYSSRHYNTDRRLYDNFTKQTGIKVNLVEAEADPLIERIKSEGRNSPADILITVDAGRLWRAQQEGIFAPVNSRILQQKIPSYLREPKGHWYGFSKRLRVIMYNKKRVNPSQLSSYDDLINPRWRSKVVSRSSSNIYSQSFTAWLVATRGEAAAEKWCRGLVGNFARPPQGNDKAQIEAVAAGMADLALANTYYLAGYASDKDPAKRAIYEQVGVFFPTGRGAHVNISGAGLIKTAPNREAAIKFLEYLATPEAQNFFAQGNNEYPVVEGITVTASLAKFGSYKSDVASVANYGPNLAKSVQVMNRAGWK

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Crispr_ID: NC_011729_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_7

884072-885274

TypeIII

Consensus_repeat	Method
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CRISPRCasFinder
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CRT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	PILER-CR

16 spacers

cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas14j

The CRISPR arrays of NC_011729_7

>merge|NC_011729|7|884072-885274|CRISPRCasFinder,CRT,PILER-CR
TTTTTCAGTTATTCCTATTCAACCCAATAGGTAGGGCTTACCTTAAACAATTCGAGAGAGCGGAAAAGTTTAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGGTTGGTTTGAAGGAGGACTAAAAGATTGGGCAAATGCGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGCGGCTGAAAAATCCGGTTTTACTGATCTCGATCGCGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGATATCCAGGGGATTACCGCACTTTATGATCTTCATCAGATGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTTTCAAGAATTTTTAAGAGGGCAATTCGCTGAAAAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGACTTTGGTGTATTCCGATTAGATGGCGTTCCTCTTGAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGCCGGTGCATATGCCATCGGGCCATTTACCTCCAAAGAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGGTCAAACTAGGTAAACCTTATGAAATATAGCTACTTTACGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGAATCCGTCAGGGAGTTGACAGCGATTGTTTCTCCGGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGCTGTCAAACTGTTCGAGGCCGAAAAGCCCAGCAGTAATGAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGATGATGGGAACGGAAGCATATGATGCTACCGTTAAGGGTAAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGCTTGTTTGTATTTTATTTACTTTAAGTTTGTCTTCAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGAAGAAGCAAAAAATTCAAAAGCGCAAAGAATATTTCGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGACTTTTCCGGGCAAAAGGTCGAGCATTTCGGTCGAACGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTAAAGCCAATTGGTCTAGCAATACTTCCAGTAACTTGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGAAGAGCCTGCCAAACCTAGGGTGTAAAACCGCCTGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

>NC_011729|7|6|884072-885274|CRISPRCasFinder
TTTTTCAGTTATTCCTATTCAACCCAATAGGTAGGG	CTTACCTTAAACAATTCGAGAGAGCGGAAAAGTTTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTTGGTTTGAAGGAGGACTAAAAGATTGGGCAAATGC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CGGCTGAAAAATCCGGTTTTACTGATCTCGATCGC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATATCCAGGGGATTACCGCACTTTATGATCTTCATCAGAT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTCAAGAATTTTTAAGAGGGCAATTCGCTGAAAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ACTTTGGTGTATTCCGATTAGATGGCGTTCCTCTTGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CCGGTGCATATGCCATCGGGCCATTTACCTCCAAAGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTCAAACTAGGTAAACCTTATGAAATATAGCTACTTTAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AATCCGTCAGGGAGTTGACAGCGATTGTTTCTCCG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CTGTCAAACTGTTCGAGGCCGAAAAGCCCAGCAGTAATGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATGATGGGAACGGAAGCATATGATGCTACCGTTAAGGGTAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CTTGTTTGTATTTTATTTACTTTAAGTTTGTCTTCA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AAGAAGCAAAAAATTCAAAAGCGCAAAGAATATTTC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ACTTTTCCGGGCAAAAGGTCGAGCATTTCGGTCGAAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TAAAGCCAATTGGTCTAGCAATACTTCCAGTAACTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AAGAGCCTGCCAAACCTAGGGTGTAAAACCGCCT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

>NC_011729|7|2|884072-885274|CRT
TTTTTCAGTTATTCCTATTCAACCCAATAGGTAGGG	CTTACCTTAAACAATTCGAGAGAGCGGAAAAGTTTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTTGGTTTGAAGGAGGACTAAAAGATTGGGCAAATGC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CGGCTGAAAAATCCGGTTTTACTGATCTCGATCGC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATATCCAGGGGATTACCGCACTTTATGATCTTCATCAGAT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTCAAGAATTTTTAAGAGGGCAATTCGCTGAAAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ACTTTGGTGTATTCCGATTAGATGGCGTTCCTCTTGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CCGGTGCATATGCCATCGGGCCATTTACCTCCAAAGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTCAAACTAGGTAAACCTTATGAAATATAGCTACTTTAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AATCCGTCAGGGAGTTGACAGCGATTGTTTCTCCG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CTGTCAAACTGTTCGAGGCCGAAAAGCCCAGCAGTAATGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATGATGGGAACGGAAGCATATGATGCTACCGTTAAGGGTAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CTTGTTTGTATTTTATTTACTTTAAGTTTGTCTTCA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AAGAAGCAAAAAATTCAAAAGCGCAAAGAATATTTC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ACTTTTCCGGGCAAAAGGTCGAGCATTTCGGTCGAAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TAAAGCCAATTGGTCTAGCAATACTTCCAGTAACTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AAGAGCCTGCCAAACCTAGGGTGTAAAACCGCCT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

>NC_011729|7|3|884144-885274|PILER-CR
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTTGGTTTGAAGGAGGACTAAAAGATTGGGCAAATGC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CGGCTGAAAAATCCGGTTTTACTGATCTCGATCGC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATATCCAGGGGATTACCGCACTTTATGATCTTCATCAGAT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTCAAGAATTTTTAAGAGGGCAATTCGCTGAAAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ACTTTGGTGTATTCCGATTAGATGGCGTTCCTCTTGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CCGGTGCATATGCCATCGGGCCATTTACCTCCAAAGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTCAAACTAGGTAAACCTTATGAAATATAGCTACTTTAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AATCCGTCAGGGAGTTGACAGCGATTGTTTCTCCG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CTGTCAAACTGTTCGAGGCCGAAAAGCCCAGCAGTAATGA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATGATGGGAACGGAAGCATATGATGCTACCGTTAAGGGTAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CTTGTTTGTATTTTATTTACTTTAAGTTTGTCTTCA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AAGAAGCAAAAAATTCAAAAGCGCAAAGAATATTTC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ACTTTTCCGGGCAAAAGGTCGAGCATTTCGGTCGAAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TAAAGCCAATTGGTCTAGCAATACTTCCAGTAACTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AAGAGCCTGCCAAACCTAGGGTGTAAAACCGCCT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012598192.1\|883528_883966_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350263
NC_011729.1\|WP_012598180.1\|870554_870965_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598202.1\|893558_894056_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|269826
NC_011729.1\|WP_012598194.1\|886048_886345_+\|DUF3593-domain-containing-protein	unknown	unknown	gnl\|CDD\|371929
NC_011729.1\|WP_012598188.1\|880720_881146_+\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NC_011729.1\|WP_041237986.1\|888501_889980_+\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_011729.1\|WP_012598198.1\|890468_890999_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598191.1\|883262_883532_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598187.1\|879863_880721_+\|hypothetical-protein	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_011729.1\|WP_012598201.1\|893106_893370_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041237985.1\|881255_882941_+\|RAMP-superfamily-protein	unknown	unknown	gnl\|CDD\|213662
NC_011729.1\|WP_012598199.1\|891012_891312_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598182.1\|872902_873307_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_011729.1\|WP_012598195.1\|886905_887952_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
NC_011729.1\|WP_012598185.1\|875979_878022_+\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_011729.1\|WP_012598186.1\|878009_879134_+\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_011729.1\|WP_041237987.1\|891736_893098_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NC_011729.1\|WP_012598181.1\|871332_872835_-\|transposase	cas14j	-	gnl\|CDD\|223747
NC_011729.1\|WP_012598197.1\|889998_890334_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NC_011729.1\|WP_012598193.1\|885723_886029_+\|DUF2499-domain-containing-protein	unknown	unknown	gnl\|CDD\|371197

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012598192.1\|883528_883966_+\|PIN-domain-containing-protein	gnl\|CDD\|350263	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins. Mycobacterium tuberculosis VapC26 cleaves 23S rRNA in the Sarcin-Ricin Loop, it is inhibited by the cognate VapB26 antitoxin. This subfamily belongs to the VapC (virulence-associated protein C)-like nuclease family of the PIN domain-like superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.6734e-12
NC_011729.1\|WP_012598202.1\|893558_894056_-\|hypothetical-protein	gnl\|CDD\|269826	cd14741, PAAR_5, proline-alanine-alanine-arginine (PAAR) domain. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family in bacteria as well as some archaea, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	3.15217e-18
NC_011729.1\|WP_012598193.1\|885723_886029_+\|DUF2499-domain-containing-protein	gnl\|CDD\|371197	pfam10693, DUF2499, Protein of unknown function (DUF2499). Members of this family are found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins.	1.47511e-43
NC_011729.1\|WP_041237986.1\|888501_889980_+\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	2.37095e-33
NC_011729.1\|WP_012598187.1\|879863_880721_+\|hypothetical-protein	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.65842e-19
NC_011729.1\|WP_012598194.1\|886048_886345_+\|DUF3593-domain-containing-protein	gnl\|CDD\|371929	pfam12159, DUF3593, Protein of unknown function (DUF3593). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 98 and 228 amino acids in length. There is a conserved LHG sequence motif.	4.08404e-46
NC_011729.1\|WP_041237985.1\|881255_882941_+\|RAMP-superfamily-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	0.00942675
NC_011729.1\|WP_041237987.1\|891736_893098_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.63781e-149
NC_011729.1\|WP_012598182.1\|872902_873307_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	9.07212e-49
NC_011729.1\|WP_012598195.1\|886905_887952_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.28263e-144
NC_011729.1\|WP_012598185.1\|875979_878022_+\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.14089e-13
NC_011729.1\|WP_012598186.1\|878009_879134_+\|hypothetical-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	7.16142e-08
NC_011729.1\|WP_012598181.1\|871332_872835_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.38688e-34
NC_011729.1\|WP_012598197.1\|889998_890334_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	9.31632e-09

>NC_011729.1|WP_012598192.1|883528_883966_+|PIN-domain-containing-protein
MNYPPIILVDSSILVAYYSTNDDYHQPVCTFFERCTSQLITTVPCVTEVMYLLSSSYLTQNEFLNDLAQKLYECIPLLNQDFERIKQLNQQYADLPGDFADLSLVAISERLNIAAIVTLDDDFNIYRRYRKQPFERILLPNSNSF
>NC_011729.1|WP_012598191.1|883262_883532_+|hypothetical-protein
MLSIQLDPETEAYLTEILSAEKTTSSELLKRLIYEHWLSLKPRQTLIERRGGHPQHLLQDAPSNLSLRENRKKAVSEYIKQRHQKIQSE
>NC_011729.1|WP_041237985.1|881255_882941_+|RAMP-superfamily-protein
MTIADAYKKVPMMYRAQVGDRSQLQYIKKDADSDIKFWTSEWIERTYPYPPSFTPDNQTRTITASFNWRFVTNGGQDDGIIRPVIGAKGYPFYPGSSMKGAFSRACTPIQRQRYCGKPTPDGDVEPGILRFHGGYPVDKSWQDNLIDIVHPQQCWQVQDDKKEGGAFAQISLYQPTLCFAISSTITLKDREWEIILDIWQKAISTGLGCRVSAGYGQPKKFIGNILYQTELKGTGIAAKLLDDSAEFRTNIFRAGIRGHALRVFGGLTDEKNAETVVEKLFGGTKNNGGTVGLLSMNFQQKYPGKELGTFGSDAWEVDTYDVEGCLNWGLTQTLPEEQEKALKQLIQALTRFGMVFGGFGKSWRRVDHRQFYPEYYAQKQQKPLIGCHWQWNGNRALIFDVKVYKLEQVSKFINEVQEIAKHWLKLQKITITSGQYATSWRESWHQEKVQVWGRIAENEDDCRAIKWLHQPYRKEDVNFGIKQGSIYKSLLTGQMSQIGRLWHRMYPVIRLLKDPKNPKKPIVRETPHYLELLTIFPDDSEQTEDFLAYLSSNLSKFEQLW
>NC_011729.1|WP_012598188.1|880720_881146_+|hypothetical-protein
MSWQSYDLDRKAQKLVLNALKREPKTLNQSYKMRMTCSYGLERFWGEHLRLQKKEPEKSIYWQETWDSLVEIMKKAQVEIPNDPVNVDSPTAIETMSKKLWDLDLDTQRISLAVLTQLCDCIVWWTQRYKGRHSDIDEEER
>NC_011729.1|WP_012598187.1|879863_880721_+|hypothetical-protein
MYHKAYGIIETKAPLHVGASSGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRQKRFKWENENQDKSKELPKEYDENYWYGHQSIQEQQDGGTTEALVKFEYASLIWLPVFCPGQPVVWVSCPRLLERYQQIINLDDSLPKPYTGANNLRGRNIKGNHQILFFNLGFLEIEHKADLSKWIPKEISLPQDNLVVVGDNDIAQIHDMALYRQSRVKLLDDMKKVDTGSFFNVEALPEGSILIFPIALKETGWKPFEKLKNYPLYFGGLESIGFGRCEVVLGGEI
>NC_011729.1|WP_012598186.1|878009_879134_+|hypothetical-protein
MSIITEIDPKQQQTSAFKFNYLIAIKPLGLLYGSRGRFISPDNIVGRSGTSFPPVSPTLSGVFAAEYGQDNPCLKDLVVAGGFWAKSQDIQSFFVPTPLNILVNQEEIQPFKDCSLKWHTIKDKLTWDSTEQKWTKQQKTDTGKNHQSATWIKIDDWQKLQHWSIKSPLLVCESPWQELPHLHPGLEENERHTKRVEEDGRGSLFLENAVQLNPDVSLVYLSNQSLSLDLGKTGWYRFGGEGHIVEISCHELAETTQNLLTETITDQLALITPAVWGSNHLSYRDPKIFDNEQWRDIWKLKTLITERPTPFRYRLGGKGKNKRLSRGRYAIPAGTVYLLENPLNLPWLQWPESWFPVEGYSFKRWGCGLALPLK
>NC_011729.1|WP_012598185.1|875979_878022_+|hypothetical-protein
MDKNSCTIVTFAPIQGFIEDSRKLRDLYGSSFLLSYLAKSICEAAKKEKYCVISPAPPVNVTQGTPHQIIIKGKFPQEIAQNEFNEAWHTIVTTCRYWIEDHLPNFNYCWKRDWNAWSNHAWEFFWINVEGENGEDFGQLIHRTKAKLIEEKRQRQWIGINWVGESSTLSGTDAIAFPQMSLINPKDWDYQTQKQDLETFYEDLSQAVGKAFIEYIQNNLNEPILQERYGKGFINFAANVYPRCNQTLQQKIIKRYGQRIIDLEEELSIPELVKRLITLEAIGTKAEIKLKEIPSTYRDLNRLNKDEKTENLEPDNRWTGWFLGDGDGVGNHLKNLSPESITKFSENMLNWGHKTLKTSLENTGQGRVIYAGGDDFFGIFYRTPPEPRFLKSLLNYLSQELLKIKPNLKEKVQLFKQEVKQKGLHKNINIPEQLKEGFKLIFQQKAEEINLKDCLEEAGLTLEEAKHLFSHPVLKPEECIQWFYQFNGNHQNTFWRKHGEPITVSVGFVWAAPGIPQRDVIQHCRITQEMAKKLGRDRIAIKILFNGGNYLQWSCPWVFLQGILSGYEDKKGGKNWSHFYQDIAILEARHAFRETEDKSLTHNSEIAIALFNFYFNNQENQVIDFENEQHLWNRKDENGKQISSGILGNREDYPDIKAQSRALNNWVINLAKVGFQLCLS
>NC_011729.1|WP_012598182.1|872902_873307_+|IS200/IS605-family-transposase
MTQQYRRKSHTVSLVNYHLVWIPKRRKKVLMGDVEKRLRQIIWDVALEKEWNIIALEIMPDHVHLFINVPPNIAPHDVAKAIKGRSSRLLRQEFPHLLKLPSLWTHSYFVSTAGNVSSETIRIYIEEQRHHDTT
>NC_011729.1|WP_012598181.1|871332_872835_-|transposase
MLLGYLYKLRPNQEQSAKIDSWLDLLRSTYNWSLADRINSYHQSFIQGEYCDLRSKAVASPLTCCIVKGGATGEPWKDNGKKRSVCEMQMTSLPELKKARPWYKEIDSTVLQQNLKRLEVAYKNFFSSNRKFPKFKNCSTFRSFTYTVGVKLKGNKIYLPKLGWIKYYNSRPLPDGFKIKSVTVRKKSDGYYVSIRIEDVSVPSFPIKPVEEIKTVIGLDMGLGKLIYCSDNSAINNPKFATNPKTKRLQRIIQRRVSRKKKRSNNRKKAQKKLSLFQHKIAQKREAYQWQAAQKIVNSSDAIAVEDLKISNMVKRCKPKYDKEKGRFLKNGQSAKRALNRLILDASWYSLIQKIEYLAAKSGKIVLKVNPKHTSQECSKCHHIDSSNRKGEKFLCVRCGHVDDANFQACLNIKNKAINQYQLKIKKRTFSQKKCELIKVGRDLPEPKQLNLFQTSTSELTGGKRRKHSARNGKQNVPGNLGKQLNLFEQENNYRASDTL
>NC_011729.1|WP_012598180.1|870554_870965_-|hypothetical-protein
MVNLIIESTHKPWMAVYLKILALFYLYGAAVHCANVFGFGELAWVDMPFSWKFGDISYGILDILAFIGLWLKSRWGLGIFGLIVISQLVLYVGFPQWFVLDREDQQDLWNLVMFHLVTLFIFFGLLLSKNTASPQK
>NC_011729.1|WP_012598193.1|885723_886029_+|DUF2499-domain-containing-protein
MHALSIPTWIIHISSVIEWIAATWLVWTYGDVTGDRVWRYLSYAMLPALVGALCACTWHFFDNSPSLNWLVTVQASMTVLGNCTLLAAAWWIWRSSQENMS
>NC_011729.1|WP_012598194.1|886048_886345_+|DUF3593-domain-containing-protein
MLPKDTLFALSLFPYLGFLWFLTRSGKTPHLALVGFYALLVFVAVTIPAGIYAKIHYGEQLANIDWLHGAAESFLTVSNILVALGFRQAIIERKKTSS
>NC_011729.1|WP_012598195.1|886905_887952_+|Fe(3+)-ABC-transporter-substrate-binding-protein
MNKITRRVFIGAGAATTAVVASQLSKLTIITAQTRELNLYSSRHYNTDRRLYDNFTKQTGIKVNLVEAEADPLIERIKSEGRNSPADILITVDAGRLWRAQQEGIFAPVNSRILQQKIPSYLREPKGHWYGFSKRLRVIMYNKKRVNPSQLSSYDDLINPRWRSKVVSRSSSNIYSQSFTAWLVATRGEAAAEKWCRGLVGNFARPPQGNDKAQIEAVAAGMADLALANTYYLAGYASDKDPAKRAIYEQVGVFFPTGRGAHVNISGAGLIKTAPNREAAIKFLEYLATPEAQNFFAQGNNEYPVVEGITVTASLAKFGSYKSDVASVANYGPNLAKSVQVMNRAGWK
>NC_011729.1|WP_041237986.1|888501_889980_+|iron-uptake-porin
MSQVTNVNQLRDVAPTDWAYEALRSLVERYGCIVGYPDRTFRGDRALTRWEFAAGLNACLTQLERLIQEGVAVLREDIEKLRRLAQEFEAELAALGSRIDNLEDRVAFLEDHQFSTTTTLTGEVIFAISGIADGERNNGTEDIPRITTFGHRTRLEFNTSFTGEDLLYTRVATGTAPEYAETAETSQANLAFAQPEDSDTFVEVLYYTFPVTDNLALWLEANGGAFDDFTPTLNALDGDGAFGALSVFGTRNPIYYQGEGGGIGLDWTFGDFQLSGGYLASLKEDPLPGRGLFNGPFAALAQFAYVPSEDFQVAFIFNHGYKTLSSGTNSRLRGLDRLFGDELIDTVHDSYSLGFTWTITDNFILSGWGGYTDAKTLNSFEDPDDDFEGTINRGFLDIWNWAITMGFPDILREGSLAGIVIGQPPWVTSSDIQLADGSRLREDSPFHVEGFFQFPFSDNISITPGIIVVTSPDNDESNDALVIGVIRTTFTF
>NC_011729.1|WP_012598197.1|889998_890334_+|ferrous-iron-transport-protein-A
MTENQPAKKWKFDFIGGSEGLSDTTEETEESFFPLTQAKVGDRVWITGLRNTQDIKPLLKMGLQPGNQLEVLPPTAGGSIVVSYQGNRIGLSSYIACHIMVTDNSTLMEDV
>NC_011729.1|WP_012598198.1|890468_890999_+|hypothetical-protein
MKFKVRSLAIAISLSILFWFTGLIFTAQGINILNQPKAYAQDVEVKVLCNLPQEIAITFLNSECQEITLTEPTVYYRYYSGDNNRYGRYLTSERYERNIDIISKLALNQAWGNGATKMLLVTLPAGTVVYEGIVAPQNPDTCYPGGGKQTFIIDSRVPEIIWAEGTPINVEDFLCQ
>NC_011729.1|WP_012598199.1|891012_891312_+|hypothetical-protein
METKQQKLLDLIDQAILIGEQISTTKNPKQADNFPQERLNRVIHQLETLKTKTLNNQLEPSQGTLSLGLARDVADWIDSLDSPLLKAVGAVEHYYQEQF
>NC_011729.1|WP_041237987.1|891736_893098_+|NCS2-family-permease
MKGLLTWISQFFQFSDHQTNFSTEILAGVTTFLTMAYILAVNPDILSNAIYLEQPKDLFGELVIATALSAAIATLLMAFLANYPFALAPGMGLNAFFAFSVVIGLNIPWQMALSTIFLEGLIFIFLTLFDIRRQIVKAIPPCLKQATATGIGLFIAYIALINGGIILPSETTTTTLTNFNQPTPLMAVVGILITSAFVARRISGALLWGILATALLGWILQISPFPSAIVAIPPFPKDLLGQALIGFWQVDLQRIWDFIAVTFVFLFVDLFDTIGTLTGVGTQAGYIDENGELPKANPALMADAIGTTLGALLGTSTVTTYIESASGISEGGKTGFTGVVVAILFTLSIFFIPVISAIPAYATVPALLIVGVLMAGNVRLIRWDDPAESIPSFLTILIMPLSYSIAEGLAVGFITYPLIKGFQGKLQETTITMWILAGVFILRFGLKALNLTD
>NC_011729.1|WP_012598201.1|893106_893370_-|hypothetical-protein
MNWYLVNLKPGKRELFVKYLNQAIQKNQLEDIFLGILTPADSIYKDMVFLQLKDLKTARPHLQLIEHFQKIEPRPIPPEQISKIVGV
>NC_011729.1|WP_012598202.1|893558_894056_-|hypothetical-protein
MGKLAARITDTVAHPLPPVLTGGPGSLNVFIGGLPAWRGIFAAAVPALQSAKQATDIAIKSAEAATAAAAGTPGLPAAKAAEETTKATSAATMSSMITSAAAGADIHTCSTPLPIPPHGPGVVIDGSKTVFINNLPACRQGDTILEALGPTNKITGGCPTVFIGG

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Crispr_ID: NC_011729_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_8

1278038-1278136

Orphan

Consensus_repeat	Method
TCAAGCACGAATGGAGGAAAAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_8

>merge|NC_011729|8|1278038-1278136|CRISPRCasFinder
TCAAGCACGAATGGAGGAAAAATTCAATACTGTTGAAGAGAAATTTAACACAATTGAGGAAAAGCTTAATACCAATCAAGCACGAATTGAGGAAAAATT

>NC_011729|8|7|1278038-1278136|CRISPRCasFinder
TCAAGCACGAATGGAGGAAAAATT	CAATACTGTTGAAGAGAAATTTAACACAATTGAGGAAAAGCTTAATACCAA
TCAAGCACGAATTGAGGAAAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012598557.1\|1268479_1270132_+\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NC_011729.1\|WP_012598566.1\|1283986_1285657_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_011729.1\|WP_012598573.1\|1291267_1291867_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|236703
NC_011729.1\|WP_012598568.1\|1287167_1287464_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598564.1\|1278558_1282050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_012598558.1\|1270267_1270615_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238786
NC_011729.1\|WP_012598554.1\|1264923_1266339_+\|15-cis-phytoene-desaturase	unknown	unknown	gnl\|CDD\|131778
NC_011729.1\|WP_012598559.1\|1270787_1271870_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_011729.1\|WP_012598555.1\|1266510_1267443_+\|phytoene-synthase	unknown	unknown	gnl\|CDD\|215339
NC_011729.1\|WP_012598572.1\|1290545_1291271_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|367950
NC_011729.1\|WP_012598571.1\|1289225_1290323_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379646
NC_011729.1\|WP_012598567.1\|1286369_1287140_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|223531
NC_011729.1\|WP_012598553.1\|1264336_1264732_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_011729.1\|WP_012598570.1\|1288651_1289170_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598565.1\|1282119_1283682_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_011729.1\|WP_012598552.1\|1262593_1264162_-\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|379101
NC_011729.1\|WP_012598556.1\|1267497_1268382_-\|4-hydroxybenzoate-solanesyltransferase	unknown	unknown	gnl\|CDD\|237240
NC_011729.1\|WP_012598569.1\|1287576_1288518_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|223282
NC_011729.1\|WP_012598562.1\|1274413_1277545_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NC_011729.1\|WP_012598560.1\|1272076_1272652_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012598557.1\|1268479_1270132_+\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	5.68556e-159
NC_011729.1\|WP_012598566.1\|1283986_1285657_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.13384e-32
NC_011729.1\|WP_012598573.1\|1291267_1291867_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|236703	PRK10502, PRK10502, putative acyl transferase; Provisional.	4.77236e-114
NC_011729.1\|WP_012598571.1\|1289225_1290323_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|379646	pfam14559, TPR_19, Tetratricopeptide repeat.	1.89825e-05
NC_011729.1\|WP_012598564.1\|1278558_1282050_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.81854e-124
NC_011729.1\|WP_012598558.1\|1270267_1270615_+\|hypothetical-protein	gnl\|CDD\|238786	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.	1.8319e-45
NC_011729.1\|WP_012598554.1\|1264923_1266339_+\|15-cis-phytoene-desaturase	gnl\|CDD\|131778	TIGR02731, Phytoene_dehydrogenase_chloroplastic/chromoplastic, phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_011729.1\|WP_012598559.1\|1270787_1271870_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.63875e-136
NC_011729.1\|WP_012598555.1\|1266510_1267443_+\|phytoene-synthase	gnl\|CDD\|215339	PLN02632, PLN02632, phytoene synthase.	1.28764e-159
NC_011729.1\|WP_012598572.1\|1290545_1291271_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|367950	pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.	3.67054e-69
NC_011729.1\|WP_012598567.1\|1286369_1287140_+\|MinD/ParA-family-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	2.52781e-41
NC_011729.1\|WP_012598553.1\|1264336_1264732_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	3.64269e-65
NC_011729.1\|WP_012598565.1\|1282119_1283682_-\|TIR-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	0
NC_011729.1\|WP_012598552.1\|1262593_1264162_-\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|379101	pfam13282, DUF4070, Domain of unknown function (DUF4070). This is a bacterial domain often found at the C-terminus of Radical_SAM methylases.	1.07976e-62
NC_011729.1\|WP_012598556.1\|1267497_1268382_-\|4-hydroxybenzoate-solanesyltransferase	gnl\|CDD\|237240	PRK12870, ubiA, 4-hydroxybenzoate octaprenyltransferase.	2.07904e-167
NC_011729.1\|WP_012598569.1\|1287576_1288518_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	2.41463e-26
NC_011729.1\|WP_012598562.1\|1274413_1277545_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NC_011729.1\|WP_012598560.1\|1272076_1272652_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.62063e-18

>NC_011729.1|WP_012598562.1|1274413_1277545_+|multidrug-efflux-RND-transporter-permease-subunit
MFVDFFIKRPVFSTVCAIIILLVGTISIFTLPVDRFPDISPTQVQVTATYNGANAQVVENAVTNILERQINGVEGMKYITSSSSNDGTSSITVTFDSSRDKDIAAVDVQNQVALVEPQLPEDVQRLGVQVSKQSNNILLGIGLYDENQQYDNVFLSNYADRYIVDALKRIEGVGNVRIFGERRYAMRLWLDPVRLASRGLTMQDVIQALSEQNIQVGAGKIGAQPAPEGQQYQLDIRAESQLSDPGEFENLLLKADENVGLVRLRDVGRAELGAQDYNSFIRYRGQEAVGVGIYQLTGSNALQVAHKVKQAMEELATTFPAGVRYQVAFDTTLFIEESLREVVITLLMAVGLVVLVILIFLQDWRTTLIPSITIPVALVGTFAYVKVFGFSLNSLTLFGLTLATGMVVDDAIIVVEQISRYIQERGMSPQEAASQAMKELFGAVIATSLVLLAVFVPVAFFPGTTGALYQQFALTIAFSITISTFLAVTLTPSLCALMLRPDSSIPGWLMVIFGKFNDFLDWTRQGYRRSLIFLARIRPIVMIVFAGLLGATAWLYVQVPNAFLPQEDEGYFMTIIQAPEGVSLQYTSEVMKKVEAAILEEPEIRATFAIGGFAFSGSTPNQGIIFCPLKPWEERQGPQSTAEAVIGRLWGKFAQIPEARILPINPPAIRSLGNFGGFVFQLQDRRANADFPSFMESLGQLLGQANQNPNLQRVFTTFTANTPQLIVDVDRNRAKALQVSIDEIFNTLQTALGGQYVNDFTLQQRTYRVYVQADEQFRANPEDIGRLYVRSENDQMIPIGNLVNIRRAVGPQTINHFNLYRSIEVTGSAGPGVSSGQAMDSMETVATQALAPGLGYEWSGISLEEVESGGLAPLIFGLGLLFVFLVLAAQYENYIDPLIIMLAVPLAILGALLAQMLRGFPNDVYCQIGLVMLIGLASKNSILIVEFANQLREEGLPIVKAAIEASQERLRPILMTAISTLLGIFPLVIAVGAGSASRQSLGTAVFGGMLIATFLSLFIVPILYIVIKSFTEQLWPKKSAVKH
>NC_011729.1|WP_012598560.1|1272076_1272652_-|helix-turn-helix-transcriptional-regulator
MLELATLGLLQREPLHGYRLKQQLELLMSGCISVNYGAIYPLLKRLEEKGFLEVCLEEDGHGGNTRKIYQITETGRERWKKKMMEHPHESWVHARSRFMIKFFFFSYIESQERIKLLEHRLKVCQLRLENQDIEIFSPDSYQSIAWGRCQEMLANEILWLEKQIVHEKTKLLPLNSRRKVQLTIKSRVDNG
>NC_011729.1|WP_012598559.1|1270787_1271870_+|heat-inducible-transcriptional-repressor-HrcA
MSVRLKLSDRHQNILRATIQHYIATAEPVGSKTLVEEYNFSVSSATVRNVLGRLEKAGLLYQPHTSSGRVPSDQGYRTYVDQLIVPDEKIGKKIEKSLNKELNWDSWSFEALLQRATQILANLSGYIALITLPQSSANRLRHLQLVQVSSKQLMLIMVTDSYQTQSVLIDNPLSVPEEQEDNQEGIEEELQILSNFLNSKLKGLSLAELATLDWSELDQEFTQYTNFLKKLLRELARNLQSSVTTPIIVHGVSEVLRQPEFSQLQQIQMLLHLLEEEQDQLLPLVFEISNPAVLIKRVRVKIGSENPLESMRPCALISATYNQGDLPIGSVGIIGPTRMLYENTIPLVESTADYLSDALS
>NC_011729.1|WP_012598558.1|1270267_1270615_+|hypothetical-protein
MINEPIPQITVEELAIRLADRDPDLQLIDVREPNEIEIAYIEGFTVLPLSEFSQWSPQINTQFNPSGETLVLCHHGMRSAQMCQWLRNAGFTNVKNIVGGIDAYSLLIDPNIPRY
>NC_011729.1|WP_012598557.1|1268479_1270132_+|Ppx/GppA-family-phosphatase
MVNSYHQTIPNRTKSTMITQSAPCTLAAIDIGTNSIHMVVVHIDPVIPAFTIIAREKDTVRLGDREPKTGELTREAILRSIATLKRCKEFAHSLEADHIVAVATSATREAPNGENFLQLIEQEVGIGVDLISGYEEARRIYLGVLSGMDFQSQPHIIIDIGGGSTEIILADSEDARFLSSTKVGAVRLTQDFVKSDPITETDFASLRAYVQGMLERPIDELRTYLQPGEEPRIVGTSGTIETLVTILALEKLGTVPSPLNGYQITRKEIKDMVKRFASMTYEQRLTIAGMSDKRAEIILAGSVVLLEAMTMLKAETITLCERALREGMIVDWMLTHGYIADRLRYQSEVRQRSVFKLAHKYNVNLDHAQRVAGFALSLFDQIQGYLHTWGTQEKELLWAASILHNSGLYISHSAHHKHSYYLIRHGELLGYTEIELELIANIARYHRKSKPKKKHIPYSQLPDNQRKMIKQLSSILRIAVALDRRQIGAIERLESKYDPEYKKLHLHLFPSQPEDDCALELWNLDYKKVVFEEEYNVQVVATLESVAVRV
>NC_011729.1|WP_012598556.1|1267497_1268382_-|4-hydroxybenzoate-solanesyltransferase
MTHSQQTLEPTWMTIIRLLRWDKPAGRLILMIPALWAVFLAAHGTPPLPLVGVIILGTLATSATGCVVNDLWDRDIDPQVERTCNRPIAARALSVRVGIIIAFIALCCAAVLAFYLNSVSFWLCVGAVPVIIGYPLAKRVFPVPQLVLSMAWGFAVLISWSAVTAGLETATWLLWGATIFWTLGFDTVYALSDREDDLKIGINSSAIFFGDYAPDAVGFFFATTAGLLACLGVEMRLNMVFWLAWAIAVMVWITQYIRLRQKEIPKAVYGQIFSQNVWIGFILLSGMILGLLLT
>NC_011729.1|WP_012598555.1|1266510_1267443_+|phytoene-synthase
MLQLPKPTQPNPPLASLDEAYELCRQITEKYSKTFYLGTLLMPPEKRQAIWAIYVWCRRTDELVDGPQAKLTTPETLDNWEKHLESVFAGHPLDDADVALVDTLKRFPMDIQPFRDMIAGQRMDLYRSRYETFEELQLYCYRVAGTVGLMSSAVLGIDERYRTAPWEKNQPLYIPQQEAIALGIANQLTNILRDVGEDAGRGRIYLPLEDLDLFNYSQEDLFNGVIDERWRELMRFQIQRARKYYTEAERGIRALNADSRWPVWAALMLYQGILDVIEMNDYDVFNQRAFVPTAKKMLYLPIAWLRAQTL
>NC_011729.1|WP_012598554.1|1264923_1266339_+|15-cis-phytoene-desaturase
MRVAIAGAGLAGLSCAKYLVDAGFTPIVLERRDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELKIEDRLQWKEHTMIFNQPEKPGTYSRFDFPDIPAPINGVMAILSNNDMLTWPEKIKFGLGLIPAMIKGQSYVEEMDQYSWSEWLKKQNIPPRVEKEVFIAMSKALNFINPDEISATILLTALNRFLQEKNGSKMAFLDGSPTERLCQPLVDYITARGGEVRLNAPLKEILLNGDGTVQSFLIRGLDGAADEILTADLYVSAMPVDPLKVMLPKPWREMDFFKKLEGLEGVPVINLHLWFDRKLTEIDHLLFSRSPLLSVYADMSNTCKEYANPDKSMLELVLAPAKDWISKSDEEIIAATMTELEKLFPRHFLGEKPAKLLKYHVVKTPRSVYKATPGRQACRPDQKTPLANFYLAGDYTMQRYLGSMEGAVLSGKLAARAIAEDYSPKTSAVPMLGNPA
>NC_011729.1|WP_012598553.1|1264336_1264732_-|glycine-cleavage-system-protein-GcvH
MEHEYPDDLRYLDSHEYVRLDGEIATIGISAFAIEQLGDIVFLELPEVGEAVEVGESFGHIESVKAVEDLYPPVSGTVIERNEAMIDSPELIGDDPYGEGWLLKLRVVNPDNELDDTLTADEYRSQVEGEA
>NC_011729.1|WP_012598552.1|1262593_1264162_-|B12-binding-domain-containing-radical-SAM-protein
MKILLIYPLFPPTFWSYEKSLELVNRKVLLPPLGLITVAAILPQDWEFKLCDRNIRAVTEEEWNWADLVIISGMIVQKPDLIAQIQEAKQRGKLVAVGGAYPTSVPLDMEQAGADFLILDEGENTLPEFVEALNRGETQGIFRSSEKPDITLTPIPRYDLLELDAYDSMSIQFSRGCPFQCEFCDIIILYGRKPRTKTPFQLLKELDYLYQLGWRRGVFMVDDNFIGNKRNVKNFLRQLKVWQIEHHFPFRFNTEASVDLAQDDELMDLMVECNFDAVFLGIETPDEDSLKLTKKFQNTRHPLLETVDKMIRKGLRPMAGFIIGFDGEKPGAATRIIDFVEEAAIPTAMFGMLQALPNTALWERLEKEGRLLANNKQDINQSTLMNFLPTRPIEEIAAEYIEAFWKLYDEEMFLERTYRCFLKLGAPRAKVDFKWPAWVDLKALLIILWRQGIKRKTRWKFWLYFWNIVRHNSPVWEHYLTVCAHNEHFLEYRQVVRQEIENQLEMFLQQKAQLKPHPVPVN
>NC_011729.1|WP_012598564.1|1278558_1282050_-|hypothetical-protein
MSESNAEFNYVVGGALPADAPSYVKREADEELYQALKRGEFCYIFNSRQMGKSSLKVQTLKRLQKEGIACTEIDITRMGSQDINSQQWFNSIISNLIDDFELSSNDRTWVKEHDHLTPVKRLDELINSVLLQEIKQPIVIFIDEIDSTLQLNFKDDFFAFIRACYNQRPHQPDYNRLTFALIGTATPSDLIQDKTRTPFNLGTAIDLKGFNVREVELLAQGLEGKADSPKIVIKKIYHWTRGQPFLTQKICNLLLDNYQFIRAGDEENLIENLVKSCVIKNWEAYDDPEHLRTIGDRILRNEQRAVRLLGLYQQILTQGKINADGSSDQMELCLSGLVVKRDGKLKAFNGIYEQVFDEDWIKVELNRLRPYSEAIDAWLKSERKDESLLLQGKALDEALRWKQGKQLSLDDDDFLNASQQKALEITQEKLAQTEAILAQTQKQVEQAKREQQQLQQEAKKLQQEQQKAQYTLEVTEIKVMATESKALQREGQIFDALLVALKAGDQFLSLPPQPVSLKSETKTLLATLQPQIIGALHTIYNLRECNRFIGHKNSVNSISFSPDGKTLASSSDDNTIKIWDIATAKELITLTGHQKSVNCISFSPDGKILASGSADQTIKLWDVTTWQEIKTFTGHRDSINSISFSPDSKMIASGSNDKTIKIWYLTKRQRPKNLRYHQPILSVSFSPDGKTIASSSYSKTIKLWDVAKDKPFQTLKGHKDWVTDVSFSPDGKFLVSGSGDETIKLWDVTKGKEVKTFIGHLHWVVSVNFSFDGKTIVSSSKDQMIKLWSVLEGKELMTLTGHQNMVSNVSFSPDDKMVATGSDDKTVKLWDIAINKEITTLRGHQNSVLSVSFSPDGKILASGSSDKTAKLWDMTTGKEITTFEVHQHPVLSVSFSPDGKTLASGSRDNTVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLASGSRDNTVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLASGSRDNTVKLWDVDTGKEITTFEGHQHLVLSVSFSPDGKILASGSDDNTVKLWDVDTGKEISTFEGHQDVVMSVSFSPDGKILASGSFDKTVKLWDLTTGKEITTFEGHQDWVGSVSFSPDGKTLASGSRDGIIILWRRSFDIEELMAKGCNWIQYYLNSHPEEKELREICEQYQS
>NC_011729.1|WP_012598565.1|1282119_1283682_-|TIR-domain-containing-protein
MTENSHPLPSQRVFISYRSQDPDASLAKVFYEHLKDAGHLPFMAAESIRLGENWPEGVDKELEKSDYFLLLLSEKSATSEMVIEEVSSAKRLQGRNSNNKPIIVPIRVNFPFSAPLSYDLRAYTARIQQEKWNSDTDTPIILAKVLSLLANNETPATVEPETTLTYAVETYDKPPLPAAELELPEGMIRLASPFYVQPKSCKSKCDQEIEKPGALIRIKAPRQMGKTSLLARISYYGKQQGYQTVSLDFSQFEENIFQDLKQFLKRFCASVARQLKISQEKVKEHLDNDSYGPIENCCQFFEDVIFKDLTVPLILGLDKIDLIFPYSDTAKEFLKILRLWHQNAIDKNAWKKLRLIIVHSTESYVKMDINHSPFNVGLGVKLPEFTSAQVLELAQRHGLDWNNGEVQQLMGMVGGHPYLIRLGLYNIAQQGITLSQLLQKAPTDEGIYGEHLRRHLWNLQQHPELLNAFQQVINSPQSINLETREKFKLNGMGLVDLEDNKVKLRYEQLYRPYFRDCLNL
>NC_011729.1|WP_012598566.1|1283986_1285657_-|mechanosensitive-ion-channel
MKKRLKILIVGFFMTFLIVMSIPLVAAQQTPSPPSPKPTKQQEGVPVVFNEDTLFTIKERFGGYSPETRVEVITQRLQDYAKDYTLPVNDLKIVSEKIENIPLSVITGDNIEIVTITNRDAQAAEYARDELAQIYLQKIKKAISHYREERSTGNLIRGVIFTIVTTIILLISLFIINNIFTKIYQRLKAWGNTHIRPVYIGTFELIRANQLDNILIFVTQVTQALIIVGLFVIYFPLIFSQFFWTQGWAVIFWNSIFQTLETGWNAFSNYLPNLLTIILVTTITYIILRFSKPFFHELSQGAFHLPNFYPEWALPTYRLITFLIIALATIIVFPLLPGFNSPAFQGISVFLGILFSLGSTSIVANVVSGTILIYTRAFRVGDPIKIDDKFGQVIETTLLVTRLLTPTNEVISIPNSEIITSSIMNLNFATKELDKPYIVRTTVYLGYEVPWRKAYEALMEAALKMDGVADFPAPFVLQGELNDVYVTYSLNVYVNQDYFKDKTATDLEKTRSKLHENIRDCCQQAEIRIFAPSYEADPTAYGPAAESFVLPSGENN
>NC_011729.1|WP_012598567.1|1286369_1287140_+|MinD/ParA-family-protein
MTQLVSIHSYRGGTGKSNLTANLAAMMALLGKRVGIVDTDIQSPGIHVLFRLDETKINKTLNDYLWNERCHVKEIAYEVSSILNQFAGEKTEELGKIFLIPSSMKSQDIATIISDGYDVEILQQGFLQLSEYFNLDYLFVDTHPGLNEETLLSIGLSNILIIILRPDQQDYLGTAVIVEVAKELEVPKILLVVNKTLPELDFNLLKDKICETYQLPVAGILPLSTEMLRLGSQGLFCLYNPEHQLTKQLRSIANFI
>NC_011729.1|WP_012598568.1|1287167_1287464_+|hypothetical-protein
MSDTYFELSYSSGLTLSKFKKLSSYQQHLINWIRQKEECSLLEVALHLCQDEETAFKTLEPLVKQGILIQIIHEDESFYRVYFAPKRSRKIPSKLKKS
>NC_011729.1|WP_012598569.1|1287576_1288518_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTTNSPKTKTLPDTIPPLTPETVERAKEGLEAACDRAVKGGIEQALGEISQIGEGGEDRRASGALRRFVMRSLIHLLFRVKVEYPERLPCGAAIIAPNHLNHIDPFLLLSELPSAPFYYILGDARTLYNQWWKRRILRFAGGVIPLVRRWREEFAVIEGAKTDAPELTELAKAIEENVPTGGDIQTLRQIDRSVQGILARGDGIILFPEGRLGTAEGQLILPLKKGVALYALRSGVPIVPVAIIGTKNLFLWKTLTLRIGYPLEIPQVKHPKRKEIEEVLDKLEKALIELMPENYQETAQLKLFSHFLNRIFY
>NC_011729.1|WP_012598570.1|1288651_1289170_-|hypothetical-protein
MGVKSNQSQSANLLNYTNVYRCPVCRHGEISNLSLMDAFACNFCNHIFSADLEQQVIQMADSQLALKWRWNGRSWQGVRGDGVELTWGYWLAGIVFVLLPTAIVSLSAYLFPPLPGSRLSWLPVIWVLLTFLSHLCCLIWLIIEYYQFPVFRYFRVLTGRFLTRFQFQRSNS
>NC_011729.1|WP_012598571.1|1289225_1290323_-|tetratricopeptide-repeat-protein
MYNNVVSAIERQDYQTAQNLLNQIEKEDSENPWFLYYTARLEEATGNLEKAKQNYSELLRQTPNPKIISQARQGIDRIKEQEEYQYQIAKAQRQEILAQIKANSDNNDFALLILEPIENELKKTAAQKFARIMDIDPYTARLQLPSRAWRLYRTGLMGTLSYYQELLTAAEIPCFCVSLPEIKQISVYQIKYFQSLSPRVVGVYETQKGEQHTITFEWNDVSQRVEGLIPIFEECVEMDAKRKLYRKTKTLDYIHICDLHLKKTNSIIRLWDQNYDFQKGVSFSDQPPSTEGKTTHNNWTQLTQYLKQQLPDVSVWSDFTPFAETALNFQEMLKLIEPHLSLFRREETAWDAAFELYSRLALIKK
>NC_011729.1|WP_012598572.1|1290545_1291271_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MTYRLVIEPTQKQQEWVNLTEQQLHYLRRVLRLKNGAHFIVMDGQGNVWNAILHENSAQLLDIITTSTELSIKLTLMVALPKGNGFEDIVRSCTELGVNTFIPVISERTLLNPSPQKVERWRKIAIEAAEQSEREIIPQIFEPINFPTALTKIKEIETNKYICVTRREEVNHLFIHLQKPLLNSLVVATGPEGGWTNLEVQTAIKAGFEPVSLGRRILRAVTAPVYIASLVSAVGETHSMS
>NC_011729.1|WP_012598573.1|1291267_1291867_-|colanic-acid-biosynthesis-acetyltransferase-WcaF
MKFDSDLTPILEAQPWVDLRQYHQSEFDRGRPSWLILIWWLVQAIVFPLSLHNWHSIRCGLLRLFGAKIGQGVVIRPTARVTYPWKVEIGDYSWIGDDVVIYSLDEIKIGSHCIISQKCYLCTGSHDIEDERFGLITAPIIIGNGVWIATDCFVAPGVKIGANSVIGARSSIFSNIPGEQVAWGTPCRPRYQRHLKQQK

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Crispr_ID: NC_011729_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_9

1283764-1283884

Orphan

Consensus_repeat	Method
GTAGGGTGTGTTAGCGCAGAGTAACGCACCAAAACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_9

>merge|NC_011729|9|1283764-1283884|CRISPRCasFinder
GTAGGGTGTGTTAGCGCAGAGTAACGCACCAAAACCCATACAAAACTGTAAATCATATCATGAATAATTGGGGCGATCGCTATCGTAGGGTGTGTTAGCGCAGCGTAACGCACCAAAACCC

>NC_011729|9|8|1283764-1283884|CRISPRCasFinder
GTAGGGTGTGTTAGCGCAGAGTAACGCACCAAAACCC	ATACAAAACTGTAAATCATATCATGAATAATTGGGGCGATCGCTATC
GTAGGGTGTGTTAGCGCAGCGTAACGCACCAAAACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012598557.1\|1268479_1270132_+\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NC_011729.1\|WP_012598566.1\|1283986_1285657_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_011729.1\|WP_012598573.1\|1291267_1291867_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|236703
NC_011729.1\|WP_012598568.1\|1287167_1287464_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598564.1\|1278558_1282050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_012598558.1\|1270267_1270615_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238786
NC_011729.1\|WP_012598565.1\|1282119_1283682_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_011729.1\|WP_012598559.1\|1270787_1271870_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_011729.1\|WP_041238036.1\|1292851_1293271_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598555.1\|1266510_1267443_+\|phytoene-synthase	unknown	unknown	gnl\|CDD\|215339
NC_011729.1\|WP_012598572.1\|1290545_1291271_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|367950
NC_011729.1\|WP_012598567.1\|1286369_1287140_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|223531
NC_011729.1\|WP_012598570.1\|1288651_1289170_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598571.1\|1289225_1290323_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379646
NC_011729.1\|WP_012598556.1\|1267497_1268382_-\|4-hydroxybenzoate-solanesyltransferase	unknown	unknown	gnl\|CDD\|237240
NC_011729.1\|WP_012598574.1\|1292081_1292639_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612
NC_011729.1\|WP_012598563.1\|1277927_1278338_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598569.1\|1287576_1288518_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|223282
NC_011729.1\|WP_012598562.1\|1274413_1277545_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NC_011729.1\|WP_012598560.1\|1272076_1272652_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012598557.1\|1268479_1270132_+\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	5.68556e-159
NC_011729.1\|WP_012598566.1\|1283986_1285657_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.13384e-32
NC_011729.1\|WP_012598573.1\|1291267_1291867_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|236703	PRK10502, PRK10502, putative acyl transferase; Provisional.	4.77236e-114
NC_011729.1\|WP_012598574.1\|1292081_1292639_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	3.26743e-92
NC_011729.1\|WP_012598564.1\|1278558_1282050_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.81854e-124
NC_011729.1\|WP_012598559.1\|1270787_1271870_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.63875e-136
NC_011729.1\|WP_012598565.1\|1282119_1283682_-\|TIR-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	0
NC_011729.1\|WP_012598558.1\|1270267_1270615_+\|hypothetical-protein	gnl\|CDD\|238786	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.	1.8319e-45
NC_011729.1\|WP_012598555.1\|1266510_1267443_+\|phytoene-synthase	gnl\|CDD\|215339	PLN02632, PLN02632, phytoene synthase.	1.28764e-159
NC_011729.1\|WP_012598572.1\|1290545_1291271_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|367950	pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.	3.67054e-69
NC_011729.1\|WP_012598567.1\|1286369_1287140_+\|MinD/ParA-family-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	2.52781e-41
NC_011729.1\|WP_012598571.1\|1289225_1290323_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|379646	pfam14559, TPR_19, Tetratricopeptide repeat.	1.89825e-05
NC_011729.1\|WP_012598556.1\|1267497_1268382_-\|4-hydroxybenzoate-solanesyltransferase	gnl\|CDD\|237240	PRK12870, ubiA, 4-hydroxybenzoate octaprenyltransferase.	2.07904e-167
NC_011729.1\|WP_012598569.1\|1287576_1288518_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	2.41463e-26
NC_011729.1\|WP_012598562.1\|1274413_1277545_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NC_011729.1\|WP_012598560.1\|1272076_1272652_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.62063e-18

>NC_011729.1|WP_012598565.1|1282119_1283682_-|TIR-domain-containing-protein
MTENSHPLPSQRVFISYRSQDPDASLAKVFYEHLKDAGHLPFMAAESIRLGENWPEGVDKELEKSDYFLLLLSEKSATSEMVIEEVSSAKRLQGRNSNNKPIIVPIRVNFPFSAPLSYDLRAYTARIQQEKWNSDTDTPIILAKVLSLLANNETPATVEPETTLTYAVETYDKPPLPAAELELPEGMIRLASPFYVQPKSCKSKCDQEIEKPGALIRIKAPRQMGKTSLLARISYYGKQQGYQTVSLDFSQFEENIFQDLKQFLKRFCASVARQLKISQEKVKEHLDNDSYGPIENCCQFFEDVIFKDLTVPLILGLDKIDLIFPYSDTAKEFLKILRLWHQNAIDKNAWKKLRLIIVHSTESYVKMDINHSPFNVGLGVKLPEFTSAQVLELAQRHGLDWNNGEVQQLMGMVGGHPYLIRLGLYNIAQQGITLSQLLQKAPTDEGIYGEHLRRHLWNLQQHPELLNAFQQVINSPQSINLETREKFKLNGMGLVDLEDNKVKLRYEQLYRPYFRDCLNL
>NC_011729.1|WP_012598564.1|1278558_1282050_-|hypothetical-protein
MSESNAEFNYVVGGALPADAPSYVKREADEELYQALKRGEFCYIFNSRQMGKSSLKVQTLKRLQKEGIACTEIDITRMGSQDINSQQWFNSIISNLIDDFELSSNDRTWVKEHDHLTPVKRLDELINSVLLQEIKQPIVIFIDEIDSTLQLNFKDDFFAFIRACYNQRPHQPDYNRLTFALIGTATPSDLIQDKTRTPFNLGTAIDLKGFNVREVELLAQGLEGKADSPKIVIKKIYHWTRGQPFLTQKICNLLLDNYQFIRAGDEENLIENLVKSCVIKNWEAYDDPEHLRTIGDRILRNEQRAVRLLGLYQQILTQGKINADGSSDQMELCLSGLVVKRDGKLKAFNGIYEQVFDEDWIKVELNRLRPYSEAIDAWLKSERKDESLLLQGKALDEALRWKQGKQLSLDDDDFLNASQQKALEITQEKLAQTEAILAQTQKQVEQAKREQQQLQQEAKKLQQEQQKAQYTLEVTEIKVMATESKALQREGQIFDALLVALKAGDQFLSLPPQPVSLKSETKTLLATLQPQIIGALHTIYNLRECNRFIGHKNSVNSISFSPDGKTLASSSDDNTIKIWDIATAKELITLTGHQKSVNCISFSPDGKILASGSADQTIKLWDVTTWQEIKTFTGHRDSINSISFSPDSKMIASGSNDKTIKIWYLTKRQRPKNLRYHQPILSVSFSPDGKTIASSSYSKTIKLWDVAKDKPFQTLKGHKDWVTDVSFSPDGKFLVSGSGDETIKLWDVTKGKEVKTFIGHLHWVVSVNFSFDGKTIVSSSKDQMIKLWSVLEGKELMTLTGHQNMVSNVSFSPDDKMVATGSDDKTVKLWDIAINKEITTLRGHQNSVLSVSFSPDGKILASGSSDKTAKLWDMTTGKEITTFEVHQHPVLSVSFSPDGKTLASGSRDNTVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLASGSRDNTVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLASGSRDNTVKLWDVDTGKEITTFEGHQHLVLSVSFSPDGKILASGSDDNTVKLWDVDTGKEISTFEGHQDVVMSVSFSPDGKILASGSFDKTVKLWDLTTGKEITTFEGHQDWVGSVSFSPDGKTLASGSRDGIIILWRRSFDIEELMAKGCNWIQYYLNSHPEEKELREICEQYQS
>NC_011729.1|WP_012598563.1|1277927_1278338_+|hypothetical-protein
MSITVEESILNQILQKLDTLQKDVGDIKDNVKKLEIGQARMEEKFNTVEEKFNTIEEKLNTNQARIEEKFNTVEEKFNTFGEKFNGMDERFKGIDKRLDDINNRLNITTVGFLSIVGILVTGILAAVWNVILSRRV
>NC_011729.1|WP_012598562.1|1274413_1277545_+|multidrug-efflux-RND-transporter-permease-subunit
MFVDFFIKRPVFSTVCAIIILLVGTISIFTLPVDRFPDISPTQVQVTATYNGANAQVVENAVTNILERQINGVEGMKYITSSSSNDGTSSITVTFDSSRDKDIAAVDVQNQVALVEPQLPEDVQRLGVQVSKQSNNILLGIGLYDENQQYDNVFLSNYADRYIVDALKRIEGVGNVRIFGERRYAMRLWLDPVRLASRGLTMQDVIQALSEQNIQVGAGKIGAQPAPEGQQYQLDIRAESQLSDPGEFENLLLKADENVGLVRLRDVGRAELGAQDYNSFIRYRGQEAVGVGIYQLTGSNALQVAHKVKQAMEELATTFPAGVRYQVAFDTTLFIEESLREVVITLLMAVGLVVLVILIFLQDWRTTLIPSITIPVALVGTFAYVKVFGFSLNSLTLFGLTLATGMVVDDAIIVVEQISRYIQERGMSPQEAASQAMKELFGAVIATSLVLLAVFVPVAFFPGTTGALYQQFALTIAFSITISTFLAVTLTPSLCALMLRPDSSIPGWLMVIFGKFNDFLDWTRQGYRRSLIFLARIRPIVMIVFAGLLGATAWLYVQVPNAFLPQEDEGYFMTIIQAPEGVSLQYTSEVMKKVEAAILEEPEIRATFAIGGFAFSGSTPNQGIIFCPLKPWEERQGPQSTAEAVIGRLWGKFAQIPEARILPINPPAIRSLGNFGGFVFQLQDRRANADFPSFMESLGQLLGQANQNPNLQRVFTTFTANTPQLIVDVDRNRAKALQVSIDEIFNTLQTALGGQYVNDFTLQQRTYRVYVQADEQFRANPEDIGRLYVRSENDQMIPIGNLVNIRRAVGPQTINHFNLYRSIEVTGSAGPGVSSGQAMDSMETVATQALAPGLGYEWSGISLEEVESGGLAPLIFGLGLLFVFLVLAAQYENYIDPLIIMLAVPLAILGALLAQMLRGFPNDVYCQIGLVMLIGLASKNSILIVEFANQLREEGLPIVKAAIEASQERLRPILMTAISTLLGIFPLVIAVGAGSASRQSLGTAVFGGMLIATFLSLFIVPILYIVIKSFTEQLWPKKSAVKH
>NC_011729.1|WP_012598560.1|1272076_1272652_-|helix-turn-helix-transcriptional-regulator
MLELATLGLLQREPLHGYRLKQQLELLMSGCISVNYGAIYPLLKRLEEKGFLEVCLEEDGHGGNTRKIYQITETGRERWKKKMMEHPHESWVHARSRFMIKFFFFSYIESQERIKLLEHRLKVCQLRLENQDIEIFSPDSYQSIAWGRCQEMLANEILWLEKQIVHEKTKLLPLNSRRKVQLTIKSRVDNG
>NC_011729.1|WP_012598559.1|1270787_1271870_+|heat-inducible-transcriptional-repressor-HrcA
MSVRLKLSDRHQNILRATIQHYIATAEPVGSKTLVEEYNFSVSSATVRNVLGRLEKAGLLYQPHTSSGRVPSDQGYRTYVDQLIVPDEKIGKKIEKSLNKELNWDSWSFEALLQRATQILANLSGYIALITLPQSSANRLRHLQLVQVSSKQLMLIMVTDSYQTQSVLIDNPLSVPEEQEDNQEGIEEELQILSNFLNSKLKGLSLAELATLDWSELDQEFTQYTNFLKKLLRELARNLQSSVTTPIIVHGVSEVLRQPEFSQLQQIQMLLHLLEEEQDQLLPLVFEISNPAVLIKRVRVKIGSENPLESMRPCALISATYNQGDLPIGSVGIIGPTRMLYENTIPLVESTADYLSDALS
>NC_011729.1|WP_012598558.1|1270267_1270615_+|hypothetical-protein
MINEPIPQITVEELAIRLADRDPDLQLIDVREPNEIEIAYIEGFTVLPLSEFSQWSPQINTQFNPSGETLVLCHHGMRSAQMCQWLRNAGFTNVKNIVGGIDAYSLLIDPNIPRY
>NC_011729.1|WP_012598557.1|1268479_1270132_+|Ppx/GppA-family-phosphatase
MVNSYHQTIPNRTKSTMITQSAPCTLAAIDIGTNSIHMVVVHIDPVIPAFTIIAREKDTVRLGDREPKTGELTREAILRSIATLKRCKEFAHSLEADHIVAVATSATREAPNGENFLQLIEQEVGIGVDLISGYEEARRIYLGVLSGMDFQSQPHIIIDIGGGSTEIILADSEDARFLSSTKVGAVRLTQDFVKSDPITETDFASLRAYVQGMLERPIDELRTYLQPGEEPRIVGTSGTIETLVTILALEKLGTVPSPLNGYQITRKEIKDMVKRFASMTYEQRLTIAGMSDKRAEIILAGSVVLLEAMTMLKAETITLCERALREGMIVDWMLTHGYIADRLRYQSEVRQRSVFKLAHKYNVNLDHAQRVAGFALSLFDQIQGYLHTWGTQEKELLWAASILHNSGLYISHSAHHKHSYYLIRHGELLGYTEIELELIANIARYHRKSKPKKKHIPYSQLPDNQRKMIKQLSSILRIAVALDRRQIGAIERLESKYDPEYKKLHLHLFPSQPEDDCALELWNLDYKKVVFEEEYNVQVVATLESVAVRV
>NC_011729.1|WP_012598556.1|1267497_1268382_-|4-hydroxybenzoate-solanesyltransferase
MTHSQQTLEPTWMTIIRLLRWDKPAGRLILMIPALWAVFLAAHGTPPLPLVGVIILGTLATSATGCVVNDLWDRDIDPQVERTCNRPIAARALSVRVGIIIAFIALCCAAVLAFYLNSVSFWLCVGAVPVIIGYPLAKRVFPVPQLVLSMAWGFAVLISWSAVTAGLETATWLLWGATIFWTLGFDTVYALSDREDDLKIGINSSAIFFGDYAPDAVGFFFATTAGLLACLGVEMRLNMVFWLAWAIAVMVWITQYIRLRQKEIPKAVYGQIFSQNVWIGFILLSGMILGLLLT
>NC_011729.1|WP_012598555.1|1266510_1267443_+|phytoene-synthase
MLQLPKPTQPNPPLASLDEAYELCRQITEKYSKTFYLGTLLMPPEKRQAIWAIYVWCRRTDELVDGPQAKLTTPETLDNWEKHLESVFAGHPLDDADVALVDTLKRFPMDIQPFRDMIAGQRMDLYRSRYETFEELQLYCYRVAGTVGLMSSAVLGIDERYRTAPWEKNQPLYIPQQEAIALGIANQLTNILRDVGEDAGRGRIYLPLEDLDLFNYSQEDLFNGVIDERWRELMRFQIQRARKYYTEAERGIRALNADSRWPVWAALMLYQGILDVIEMNDYDVFNQRAFVPTAKKMLYLPIAWLRAQTL
>NC_011729.1|WP_012598566.1|1283986_1285657_-|mechanosensitive-ion-channel
MKKRLKILIVGFFMTFLIVMSIPLVAAQQTPSPPSPKPTKQQEGVPVVFNEDTLFTIKERFGGYSPETRVEVITQRLQDYAKDYTLPVNDLKIVSEKIENIPLSVITGDNIEIVTITNRDAQAAEYARDELAQIYLQKIKKAISHYREERSTGNLIRGVIFTIVTTIILLISLFIINNIFTKIYQRLKAWGNTHIRPVYIGTFELIRANQLDNILIFVTQVTQALIIVGLFVIYFPLIFSQFFWTQGWAVIFWNSIFQTLETGWNAFSNYLPNLLTIILVTTITYIILRFSKPFFHELSQGAFHLPNFYPEWALPTYRLITFLIIALATIIVFPLLPGFNSPAFQGISVFLGILFSLGSTSIVANVVSGTILIYTRAFRVGDPIKIDDKFGQVIETTLLVTRLLTPTNEVISIPNSEIITSSIMNLNFATKELDKPYIVRTTVYLGYEVPWRKAYEALMEAALKMDGVADFPAPFVLQGELNDVYVTYSLNVYVNQDYFKDKTATDLEKTRSKLHENIRDCCQQAEIRIFAPSYEADPTAYGPAAESFVLPSGENN
>NC_011729.1|WP_012598567.1|1286369_1287140_+|MinD/ParA-family-protein
MTQLVSIHSYRGGTGKSNLTANLAAMMALLGKRVGIVDTDIQSPGIHVLFRLDETKINKTLNDYLWNERCHVKEIAYEVSSILNQFAGEKTEELGKIFLIPSSMKSQDIATIISDGYDVEILQQGFLQLSEYFNLDYLFVDTHPGLNEETLLSIGLSNILIIILRPDQQDYLGTAVIVEVAKELEVPKILLVVNKTLPELDFNLLKDKICETYQLPVAGILPLSTEMLRLGSQGLFCLYNPEHQLTKQLRSIANFI
>NC_011729.1|WP_012598568.1|1287167_1287464_+|hypothetical-protein
MSDTYFELSYSSGLTLSKFKKLSSYQQHLINWIRQKEECSLLEVALHLCQDEETAFKTLEPLVKQGILIQIIHEDESFYRVYFAPKRSRKIPSKLKKS
>NC_011729.1|WP_012598569.1|1287576_1288518_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTTNSPKTKTLPDTIPPLTPETVERAKEGLEAACDRAVKGGIEQALGEISQIGEGGEDRRASGALRRFVMRSLIHLLFRVKVEYPERLPCGAAIIAPNHLNHIDPFLLLSELPSAPFYYILGDARTLYNQWWKRRILRFAGGVIPLVRRWREEFAVIEGAKTDAPELTELAKAIEENVPTGGDIQTLRQIDRSVQGILARGDGIILFPEGRLGTAEGQLILPLKKGVALYALRSGVPIVPVAIIGTKNLFLWKTLTLRIGYPLEIPQVKHPKRKEIEEVLDKLEKALIELMPENYQETAQLKLFSHFLNRIFY
>NC_011729.1|WP_012598570.1|1288651_1289170_-|hypothetical-protein
MGVKSNQSQSANLLNYTNVYRCPVCRHGEISNLSLMDAFACNFCNHIFSADLEQQVIQMADSQLALKWRWNGRSWQGVRGDGVELTWGYWLAGIVFVLLPTAIVSLSAYLFPPLPGSRLSWLPVIWVLLTFLSHLCCLIWLIIEYYQFPVFRYFRVLTGRFLTRFQFQRSNS
>NC_011729.1|WP_012598571.1|1289225_1290323_-|tetratricopeptide-repeat-protein
MYNNVVSAIERQDYQTAQNLLNQIEKEDSENPWFLYYTARLEEATGNLEKAKQNYSELLRQTPNPKIISQARQGIDRIKEQEEYQYQIAKAQRQEILAQIKANSDNNDFALLILEPIENELKKTAAQKFARIMDIDPYTARLQLPSRAWRLYRTGLMGTLSYYQELLTAAEIPCFCVSLPEIKQISVYQIKYFQSLSPRVVGVYETQKGEQHTITFEWNDVSQRVEGLIPIFEECVEMDAKRKLYRKTKTLDYIHICDLHLKKTNSIIRLWDQNYDFQKGVSFSDQPPSTEGKTTHNNWTQLTQYLKQQLPDVSVWSDFTPFAETALNFQEMLKLIEPHLSLFRREETAWDAAFELYSRLALIKK
>NC_011729.1|WP_012598572.1|1290545_1291271_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MTYRLVIEPTQKQQEWVNLTEQQLHYLRRVLRLKNGAHFIVMDGQGNVWNAILHENSAQLLDIITTSTELSIKLTLMVALPKGNGFEDIVRSCTELGVNTFIPVISERTLLNPSPQKVERWRKIAIEAAEQSEREIIPQIFEPINFPTALTKIKEIETNKYICVTRREEVNHLFIHLQKPLLNSLVVATGPEGGWTNLEVQTAIKAGFEPVSLGRRILRAVTAPVYIASLVSAVGETHSMS
>NC_011729.1|WP_012598573.1|1291267_1291867_-|colanic-acid-biosynthesis-acetyltransferase-WcaF
MKFDSDLTPILEAQPWVDLRQYHQSEFDRGRPSWLILIWWLVQAIVFPLSLHNWHSIRCGLLRLFGAKIGQGVVIRPTARVTYPWKVEIGDYSWIGDDVVIYSLDEIKIGSHCIISQKCYLCTGSHDIEDERFGLITAPIIIGNGVWIATDCFVAPGVKIGANSVIGARSSIFSNIPGEQVAWGTPCRPRYQRHLKQQK
>NC_011729.1|WP_012598574.1|1292081_1292639_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MNDKSSARQIILVTGAARSGKSEWAEQLATQMDKPVTYVATAYRDPTDLEWQERINQHCLRRPPHWQTWEIPLQLATMINKVSPPRCLIIDSLGTWVSNCLEEDDPTWEQTTMNLLTSLKQSSVDVILVAEEAGWGVVPAYPIGRLFRDRLGHLIRQIGIIADVAYLVTGGHILNLSQLGQRLNH
>NC_011729.1|WP_041238036.1|1292851_1293271_+|hypothetical-protein
MATEDQVKLYLAYWFQLGKKVLLNNGREKLLPNPIFEENRYSAEFENCWQRLIDPKSGDCYLEGTDQTIQQLLSPAWEIVDCARCQMPIPINQIGQTVLGCPCADLPLWPNTELPAPRFGVDSRKHLSNLSERLQRYQK

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Crispr_ID: NC_011729_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_10

1288514-1288606

Orphan

Consensus_repeat	Method
ATTAAATAGTAGGGTGTGTTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_10

>merge|NC_011729|10|1288514-1288606|CRISPRCasFinder
ATTAAATAGTAGGGTGTGTTAGCATCGCGTAACGCAATAAATAGTAGGGTGTGTTAGCGTAGCGTAACGCAATAAATAGTAGGGTGTGTTAGC

>NC_011729|10|9|1288514-1288606|CRISPRCasFinder
ATTAAATAGTAGGGTGTGTTAGC	ATCGCGTAACGCAATAAATAGTAGGGTGTGTTAGCGTAGCGTAACGC
AATAAATAGTAGGGTGTGTTAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012598566.1\|1283986_1285657_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_011729.1\|WP_012598568.1\|1287167_1287464_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598564.1\|1278558_1282050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_012598558.1\|1270267_1270615_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238786
NC_011729.1\|WP_012598565.1\|1282119_1283682_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_011729.1\|WP_012598559.1\|1270787_1271870_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_011729.1\|WP_041238036.1\|1292851_1293271_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598572.1\|1290545_1291271_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|367950
NC_011729.1\|WP_012598567.1\|1286369_1287140_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|223531
NC_011729.1\|WP_157867355.1\|1294470_1296219_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598560.1\|1272076_1272652_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559
NC_011729.1\|WP_012598571.1\|1289225_1290323_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379646
NC_011729.1\|WP_012598576.1\|1293273_1294230_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|274246
NC_011729.1\|WP_012598574.1\|1292081_1292639_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612
NC_011729.1\|WP_012598563.1\|1277927_1278338_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598577.1\|1294307_1294490_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598573.1\|1291267_1291867_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|236703
NC_011729.1\|WP_012598562.1\|1274413_1277545_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NC_011729.1\|WP_012598570.1\|1288651_1289170_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012598579.1\|1296339_1297380_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012598566.1\|1283986_1285657_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.13384e-32
NC_011729.1\|WP_012598574.1\|1292081_1292639_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	3.26743e-92
NC_011729.1\|WP_012598564.1\|1278558_1282050_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.81854e-124
NC_011729.1\|WP_012598559.1\|1270787_1271870_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.63875e-136
NC_011729.1\|WP_012598565.1\|1282119_1283682_-\|TIR-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	0
NC_011729.1\|WP_012598558.1\|1270267_1270615_+\|hypothetical-protein	gnl\|CDD\|238786	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.	1.8319e-45
NC_011729.1\|WP_012598572.1\|1290545_1291271_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|367950	pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.	3.67054e-69
NC_011729.1\|WP_012598567.1\|1286369_1287140_+\|MinD/ParA-family-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	2.52781e-41
NC_011729.1\|WP_012598571.1\|1289225_1290323_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|379646	pfam14559, TPR_19, Tetratricopeptide repeat.	1.89825e-05
NC_011729.1\|WP_012598576.1\|1293273_1294230_-\|ribonuclease-Z	gnl\|CDD\|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	2.88132e-154
NC_011729.1\|WP_012598573.1\|1291267_1291867_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|236703	PRK10502, PRK10502, putative acyl transferase; Provisional.	4.77236e-114
NC_011729.1\|WP_012598562.1\|1274413_1277545_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NC_011729.1\|WP_012598560.1\|1272076_1272652_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.62063e-18
NC_011729.1\|WP_012598579.1\|1296339_1297380_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0

>NC_011729.1|WP_012598568.1|1287167_1287464_+|hypothetical-protein
MSDTYFELSYSSGLTLSKFKKLSSYQQHLINWIRQKEECSLLEVALHLCQDEETAFKTLEPLVKQGILIQIIHEDESFYRVYFAPKRSRKIPSKLKKS
>NC_011729.1|WP_012598567.1|1286369_1287140_+|MinD/ParA-family-protein
MTQLVSIHSYRGGTGKSNLTANLAAMMALLGKRVGIVDTDIQSPGIHVLFRLDETKINKTLNDYLWNERCHVKEIAYEVSSILNQFAGEKTEELGKIFLIPSSMKSQDIATIISDGYDVEILQQGFLQLSEYFNLDYLFVDTHPGLNEETLLSIGLSNILIIILRPDQQDYLGTAVIVEVAKELEVPKILLVVNKTLPELDFNLLKDKICETYQLPVAGILPLSTEMLRLGSQGLFCLYNPEHQLTKQLRSIANFI
>NC_011729.1|WP_012598566.1|1283986_1285657_-|mechanosensitive-ion-channel
MKKRLKILIVGFFMTFLIVMSIPLVAAQQTPSPPSPKPTKQQEGVPVVFNEDTLFTIKERFGGYSPETRVEVITQRLQDYAKDYTLPVNDLKIVSEKIENIPLSVITGDNIEIVTITNRDAQAAEYARDELAQIYLQKIKKAISHYREERSTGNLIRGVIFTIVTTIILLISLFIINNIFTKIYQRLKAWGNTHIRPVYIGTFELIRANQLDNILIFVTQVTQALIIVGLFVIYFPLIFSQFFWTQGWAVIFWNSIFQTLETGWNAFSNYLPNLLTIILVTTITYIILRFSKPFFHELSQGAFHLPNFYPEWALPTYRLITFLIIALATIIVFPLLPGFNSPAFQGISVFLGILFSLGSTSIVANVVSGTILIYTRAFRVGDPIKIDDKFGQVIETTLLVTRLLTPTNEVISIPNSEIITSSIMNLNFATKELDKPYIVRTTVYLGYEVPWRKAYEALMEAALKMDGVADFPAPFVLQGELNDVYVTYSLNVYVNQDYFKDKTATDLEKTRSKLHENIRDCCQQAEIRIFAPSYEADPTAYGPAAESFVLPSGENN
>NC_011729.1|WP_012598565.1|1282119_1283682_-|TIR-domain-containing-protein
MTENSHPLPSQRVFISYRSQDPDASLAKVFYEHLKDAGHLPFMAAESIRLGENWPEGVDKELEKSDYFLLLLSEKSATSEMVIEEVSSAKRLQGRNSNNKPIIVPIRVNFPFSAPLSYDLRAYTARIQQEKWNSDTDTPIILAKVLSLLANNETPATVEPETTLTYAVETYDKPPLPAAELELPEGMIRLASPFYVQPKSCKSKCDQEIEKPGALIRIKAPRQMGKTSLLARISYYGKQQGYQTVSLDFSQFEENIFQDLKQFLKRFCASVARQLKISQEKVKEHLDNDSYGPIENCCQFFEDVIFKDLTVPLILGLDKIDLIFPYSDTAKEFLKILRLWHQNAIDKNAWKKLRLIIVHSTESYVKMDINHSPFNVGLGVKLPEFTSAQVLELAQRHGLDWNNGEVQQLMGMVGGHPYLIRLGLYNIAQQGITLSQLLQKAPTDEGIYGEHLRRHLWNLQQHPELLNAFQQVINSPQSINLETREKFKLNGMGLVDLEDNKVKLRYEQLYRPYFRDCLNL
>NC_011729.1|WP_012598564.1|1278558_1282050_-|hypothetical-protein
MSESNAEFNYVVGGALPADAPSYVKREADEELYQALKRGEFCYIFNSRQMGKSSLKVQTLKRLQKEGIACTEIDITRMGSQDINSQQWFNSIISNLIDDFELSSNDRTWVKEHDHLTPVKRLDELINSVLLQEIKQPIVIFIDEIDSTLQLNFKDDFFAFIRACYNQRPHQPDYNRLTFALIGTATPSDLIQDKTRTPFNLGTAIDLKGFNVREVELLAQGLEGKADSPKIVIKKIYHWTRGQPFLTQKICNLLLDNYQFIRAGDEENLIENLVKSCVIKNWEAYDDPEHLRTIGDRILRNEQRAVRLLGLYQQILTQGKINADGSSDQMELCLSGLVVKRDGKLKAFNGIYEQVFDEDWIKVELNRLRPYSEAIDAWLKSERKDESLLLQGKALDEALRWKQGKQLSLDDDDFLNASQQKALEITQEKLAQTEAILAQTQKQVEQAKREQQQLQQEAKKLQQEQQKAQYTLEVTEIKVMATESKALQREGQIFDALLVALKAGDQFLSLPPQPVSLKSETKTLLATLQPQIIGALHTIYNLRECNRFIGHKNSVNSISFSPDGKTLASSSDDNTIKIWDIATAKELITLTGHQKSVNCISFSPDGKILASGSADQTIKLWDVTTWQEIKTFTGHRDSINSISFSPDSKMIASGSNDKTIKIWYLTKRQRPKNLRYHQPILSVSFSPDGKTIASSSYSKTIKLWDVAKDKPFQTLKGHKDWVTDVSFSPDGKFLVSGSGDETIKLWDVTKGKEVKTFIGHLHWVVSVNFSFDGKTIVSSSKDQMIKLWSVLEGKELMTLTGHQNMVSNVSFSPDDKMVATGSDDKTVKLWDIAINKEITTLRGHQNSVLSVSFSPDGKILASGSSDKTAKLWDMTTGKEITTFEVHQHPVLSVSFSPDGKTLASGSRDNTVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLASGSRDNTVKLWDVETGKEITSLPGHQDWVISVSFSPDGKTLASGSRDNTVKLWDVDTGKEITTFEGHQHLVLSVSFSPDGKILASGSDDNTVKLWDVDTGKEISTFEGHQDVVMSVSFSPDGKILASGSFDKTVKLWDLTTGKEITTFEGHQDWVGSVSFSPDGKTLASGSRDGIIILWRRSFDIEELMAKGCNWIQYYLNSHPEEKELREICEQYQS
>NC_011729.1|WP_012598563.1|1277927_1278338_+|hypothetical-protein
MSITVEESILNQILQKLDTLQKDVGDIKDNVKKLEIGQARMEEKFNTVEEKFNTIEEKLNTNQARIEEKFNTVEEKFNTFGEKFNGMDERFKGIDKRLDDINNRLNITTVGFLSIVGILVTGILAAVWNVILSRRV
>NC_011729.1|WP_012598562.1|1274413_1277545_+|multidrug-efflux-RND-transporter-permease-subunit
MFVDFFIKRPVFSTVCAIIILLVGTISIFTLPVDRFPDISPTQVQVTATYNGANAQVVENAVTNILERQINGVEGMKYITSSSSNDGTSSITVTFDSSRDKDIAAVDVQNQVALVEPQLPEDVQRLGVQVSKQSNNILLGIGLYDENQQYDNVFLSNYADRYIVDALKRIEGVGNVRIFGERRYAMRLWLDPVRLASRGLTMQDVIQALSEQNIQVGAGKIGAQPAPEGQQYQLDIRAESQLSDPGEFENLLLKADENVGLVRLRDVGRAELGAQDYNSFIRYRGQEAVGVGIYQLTGSNALQVAHKVKQAMEELATTFPAGVRYQVAFDTTLFIEESLREVVITLLMAVGLVVLVILIFLQDWRTTLIPSITIPVALVGTFAYVKVFGFSLNSLTLFGLTLATGMVVDDAIIVVEQISRYIQERGMSPQEAASQAMKELFGAVIATSLVLLAVFVPVAFFPGTTGALYQQFALTIAFSITISTFLAVTLTPSLCALMLRPDSSIPGWLMVIFGKFNDFLDWTRQGYRRSLIFLARIRPIVMIVFAGLLGATAWLYVQVPNAFLPQEDEGYFMTIIQAPEGVSLQYTSEVMKKVEAAILEEPEIRATFAIGGFAFSGSTPNQGIIFCPLKPWEERQGPQSTAEAVIGRLWGKFAQIPEARILPINPPAIRSLGNFGGFVFQLQDRRANADFPSFMESLGQLLGQANQNPNLQRVFTTFTANTPQLIVDVDRNRAKALQVSIDEIFNTLQTALGGQYVNDFTLQQRTYRVYVQADEQFRANPEDIGRLYVRSENDQMIPIGNLVNIRRAVGPQTINHFNLYRSIEVTGSAGPGVSSGQAMDSMETVATQALAPGLGYEWSGISLEEVESGGLAPLIFGLGLLFVFLVLAAQYENYIDPLIIMLAVPLAILGALLAQMLRGFPNDVYCQIGLVMLIGLASKNSILIVEFANQLREEGLPIVKAAIEASQERLRPILMTAISTLLGIFPLVIAVGAGSASRQSLGTAVFGGMLIATFLSLFIVPILYIVIKSFTEQLWPKKSAVKH
>NC_011729.1|WP_012598560.1|1272076_1272652_-|helix-turn-helix-transcriptional-regulator
MLELATLGLLQREPLHGYRLKQQLELLMSGCISVNYGAIYPLLKRLEEKGFLEVCLEEDGHGGNTRKIYQITETGRERWKKKMMEHPHESWVHARSRFMIKFFFFSYIESQERIKLLEHRLKVCQLRLENQDIEIFSPDSYQSIAWGRCQEMLANEILWLEKQIVHEKTKLLPLNSRRKVQLTIKSRVDNG
>NC_011729.1|WP_012598559.1|1270787_1271870_+|heat-inducible-transcriptional-repressor-HrcA
MSVRLKLSDRHQNILRATIQHYIATAEPVGSKTLVEEYNFSVSSATVRNVLGRLEKAGLLYQPHTSSGRVPSDQGYRTYVDQLIVPDEKIGKKIEKSLNKELNWDSWSFEALLQRATQILANLSGYIALITLPQSSANRLRHLQLVQVSSKQLMLIMVTDSYQTQSVLIDNPLSVPEEQEDNQEGIEEELQILSNFLNSKLKGLSLAELATLDWSELDQEFTQYTNFLKKLLRELARNLQSSVTTPIIVHGVSEVLRQPEFSQLQQIQMLLHLLEEEQDQLLPLVFEISNPAVLIKRVRVKIGSENPLESMRPCALISATYNQGDLPIGSVGIIGPTRMLYENTIPLVESTADYLSDALS
>NC_011729.1|WP_012598558.1|1270267_1270615_+|hypothetical-protein
MINEPIPQITVEELAIRLADRDPDLQLIDVREPNEIEIAYIEGFTVLPLSEFSQWSPQINTQFNPSGETLVLCHHGMRSAQMCQWLRNAGFTNVKNIVGGIDAYSLLIDPNIPRY
>NC_011729.1|WP_012598570.1|1288651_1289170_-|hypothetical-protein
MGVKSNQSQSANLLNYTNVYRCPVCRHGEISNLSLMDAFACNFCNHIFSADLEQQVIQMADSQLALKWRWNGRSWQGVRGDGVELTWGYWLAGIVFVLLPTAIVSLSAYLFPPLPGSRLSWLPVIWVLLTFLSHLCCLIWLIIEYYQFPVFRYFRVLTGRFLTRFQFQRSNS
>NC_011729.1|WP_012598571.1|1289225_1290323_-|tetratricopeptide-repeat-protein
MYNNVVSAIERQDYQTAQNLLNQIEKEDSENPWFLYYTARLEEATGNLEKAKQNYSELLRQTPNPKIISQARQGIDRIKEQEEYQYQIAKAQRQEILAQIKANSDNNDFALLILEPIENELKKTAAQKFARIMDIDPYTARLQLPSRAWRLYRTGLMGTLSYYQELLTAAEIPCFCVSLPEIKQISVYQIKYFQSLSPRVVGVYETQKGEQHTITFEWNDVSQRVEGLIPIFEECVEMDAKRKLYRKTKTLDYIHICDLHLKKTNSIIRLWDQNYDFQKGVSFSDQPPSTEGKTTHNNWTQLTQYLKQQLPDVSVWSDFTPFAETALNFQEMLKLIEPHLSLFRREETAWDAAFELYSRLALIKK
>NC_011729.1|WP_012598572.1|1290545_1291271_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MTYRLVIEPTQKQQEWVNLTEQQLHYLRRVLRLKNGAHFIVMDGQGNVWNAILHENSAQLLDIITTSTELSIKLTLMVALPKGNGFEDIVRSCTELGVNTFIPVISERTLLNPSPQKVERWRKIAIEAAEQSEREIIPQIFEPINFPTALTKIKEIETNKYICVTRREEVNHLFIHLQKPLLNSLVVATGPEGGWTNLEVQTAIKAGFEPVSLGRRILRAVTAPVYIASLVSAVGETHSMS
>NC_011729.1|WP_012598573.1|1291267_1291867_-|colanic-acid-biosynthesis-acetyltransferase-WcaF
MKFDSDLTPILEAQPWVDLRQYHQSEFDRGRPSWLILIWWLVQAIVFPLSLHNWHSIRCGLLRLFGAKIGQGVVIRPTARVTYPWKVEIGDYSWIGDDVVIYSLDEIKIGSHCIISQKCYLCTGSHDIEDERFGLITAPIIIGNGVWIATDCFVAPGVKIGANSVIGARSSIFSNIPGEQVAWGTPCRPRYQRHLKQQK
>NC_011729.1|WP_012598574.1|1292081_1292639_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MNDKSSARQIILVTGAARSGKSEWAEQLATQMDKPVTYVATAYRDPTDLEWQERINQHCLRRPPHWQTWEIPLQLATMINKVSPPRCLIIDSLGTWVSNCLEEDDPTWEQTTMNLLTSLKQSSVDVILVAEEAGWGVVPAYPIGRLFRDRLGHLIRQIGIIADVAYLVTGGHILNLSQLGQRLNH
>NC_011729.1|WP_041238036.1|1292851_1293271_+|hypothetical-protein
MATEDQVKLYLAYWFQLGKKVLLNNGREKLLPNPIFEENRYSAEFENCWQRLIDPKSGDCYLEGTDQTIQQLLSPAWEIVDCARCQMPIPINQIGQTVLGCPCADLPLWPNTELPAPRFGVDSRKHLSNLSERLQRYQK
>NC_011729.1|WP_012598576.1|1293273_1294230_-|ribonuclease-Z
MEITFLGTSSGVPTRARNVSSVALRLPQRAEVWLFDCGEGTQHQLLRSDIKTSQLRRIFITHLHGDHIFGLMGLLASCGLAGNAQPVDLYGPPGLKDYIQACSKYSHTHFGNRVQVYTVEPGLVYEDEEFTVTCDLLKHRIPAFGYRIAEKDRTGRFDVEKAKSLGIPPGRIYGQLKKGETVTLTDGRVIRGQDLCGPTEAGRKFAYCTDTVFCETAIELAQGVDVLIHEATFAHQDAELAFDRLHSTSTMAAQVALAAGVNLLIMTHFSPRYAPGNPLDVTNLLQEARAIFPHTKLAYDFFNYEIPRHRSDHLVEVS
>NC_011729.1|WP_012598577.1|1294307_1294490_+|hypothetical-protein
MWGEGGVWGEGGVWGEGGEGGVWGEGGVWGVWGVSSPVACSLLPVACCLLPVAYINYLSL
>NC_011729.1|WP_157867355.1|1294470_1296219_-|hypothetical-protein
MKYSKKYVIFWLVLSIFFSIFYSYFALEQAFSGKYIIQDDARQHVFWMARFIDPQLYPNDILADYFQEAAPLGYTKLYQVFSLLGIHPFLLHKLLPLALGLVATSYLFFFTLEILPIPLAGFCAATFLNLSLWTRDDLVSGTPVAFAVPLFCSFLYYYITENKVLTLLSMALLGLFYPQCLLVAFGLISLRIFRLHHKMIKFSAEINDYIWLLAAGLLTFLVLLPYVVFPSSFGEVITKSEAQQLPVFQAEGWSSFFSSHPFQYWFCGKRSGILPTDWCRFYRRGLELLPPQLWLCIILPIGLYVLKKFSFSVEPSPKKAIVLLQLAFVSLTLFLLAHGLAFTLHLPNRYTEHTLKIVFAVSAALLLVRFMLSILGKIPPKTQPLLATLWLFFIIIYIPMGYPLLLINEGYEFPSTDYVKGQYPELYQFLENQPKDSLTASLVPETNNLPSFTQRSILVGGSGYALPYHPQFFQEMERRTLDLIQAQYSSEPEKVSEFINRYGIDFWLLDKSAFTQDYIKQDEWLNAFAHQINPQELLSAQTRPFLEKNLNKCAILQADQLILLDANCLLKISSRAFIKKDS
>NC_011729.1|WP_012598579.1|1296339_1297380_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MATILSIETSCDETAVAIVKNRNIYSNIVASQIDLHQTYGGVVPEVASRQHLETINPCLEQAFIEANLNWSDIDGIAATVAPGLIGALMVGVSAAKTLSILYQKPFIGVHHLEGHIYASYLSEPDLQPPFLCLLVSGGHTSLIYVKDCGIYEMLGSTRDDAAGEAFDKVARLLQLSYPGGPIIDRMAQTGNPHAFSLPEGRVSLPEGGYHPYDSSFSGLKTAVLRLVQKLEQDHLSLPVHDLAASFQETVARSLTKKTITCALDYNLTTIAVGGGVGANSALRKHLTSAATEHNLKVFFPPLKLCTDNAAMIGCAAADHFNRGHFSPLSIGVQSRLPITEVMKLYQ

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Crispr_ID: NC_011729_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_11

1894683-1904400

TypeI-D

V-U2

Consensus_repeat	Method
CTTTCTATTT--AATGAATCCTGGTAACGGGATTGAAAC	PILER-CR
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CRISPRCasFinder
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CRT

133 spacers

cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3

The CRISPR arrays of NC_011729_11

>merge|NC_011729|11|1894683-1904400|PILER-CR,CRISPRCasFinder,CRT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGATATTTATGGTGGTCGGCACAGTTTTATGAACAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATATTTTCAGAAAATCCCGATGAATTTTTCCCTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTTGAATTAACTTATCCGCAAGCTTGCGGCAAAAATTTTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTAGCGATAGCGGTCAGGTTAGCCCGCCCTACCGATTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAAAGTCCATTAAGCCCCCTGGTTGTTGACTTCATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCATCAGATCTTCGTCCAGATCCATGAATCCTCTCGAATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCTAGAATTGGATATTCTCGCCTAGAGGAAACTTTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTCTCAATTTCATACTGATACTATCAAGAAACAATCTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACTAAGCTAATTTTTTTGTTAGTGCCTGGCTTCTGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTTTCGCACTGTTCGGTCGGTGCGTTTGATCCTTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTTTTATTTTTTCTTGTTGGATTTTTTAATAATTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCCTTCGGTTGTCCCTCTCCCGGATATTGCTAAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTCGGACAGTTAGATTCAGCAGAAGGAAGAGGAGCAGCAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTCTACTAAGATGTTCCGTCACGTTGTCTTGGCAAACGTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTTAGATTATTGATGCGCGGACTGGGAGCAACGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCTTTTATCGCGTTCCCTCGGTTGTACCTGTTCCGGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCCTGATTTTCTGGTGTGAATGTTCGTGGAACTTGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTACGCTCCTTACGATCCTTCTGGGAGATTTCAGCAAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACCGAGCGGACTTATGCGATCGTGCCTCGAATCTCTAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTGTCGAGATTTTGCTGTCCGAGATCAGCATCAAAAACACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACCGGATTAAACAGAGACACGATTCTCGACCTCAGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTAGGTATTATGAGAGTGGCAACCTTCGAGGGTCTTGGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAACAAAATAACAAAGAATAATAAAAAATATCTAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTCGATTAGTGGGAGAAACCTCTCAGACTATAACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTTTTGCCCTTCTACCGTGAAGGTATGCCCTACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCCTACTGGCTTGGTAGCGGCAAAAGGAAAACAGCACAATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGGCAAAGGCAAGCATTCATGGACTACCTCGGCTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTAAACAATAGTGTAATTCTAGATATTTATTAAGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATTTGATTCGGTGGTTTTTTGTGTATCAATAAGGCACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAAAGACGTTAAGCCAGCCCGACTCAGAAAAAAAGAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTTTGAGGGAGCGATCGTGATCGATACGCGCCATTGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACTTCCTGTAGGGAGGGCTTGCCAATGATGGGTTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACTAATATTGATGGGACGGACAGCTTTGATCTTTTTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTTGAATTGTGGCTTAATTTAGCCGTTTTGTCAGGCGCGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCGGACGATTTAATCGCATTAAGTACGCATGAAAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCGATTTAATAATTGTTCTTTGTCGATACCGTTGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGACATGATAATCTAATAAGGATATGATAATAATCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACGAGTTAAAGATACACAAATGAAAGAATTTTTAAGCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCCTTCAGGTTATTTAAATGCCTATCTTCGATTAGAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCGATGTAACTTCTCTCCAATTAATAAACTTTAATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCATCTCTTTCCAATAGATTTGCCAAAAAGGAGGATAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTCGTCCCTGTGAAGCCTTGCCCCTTAATTGGGAAGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATCGGGAGTCGTCAAAGTACATCAGGTTGTATAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAATAATTAGCTCTAATTTAGAGGATAATTCTTGTTGACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTCCCCCTGGTTATTTCTCATGAGCGTTATTCCTGGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGAATAACAGAGGCTAGAATTCTTTCTGGTATTGGGGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATTGCAACTCAAACAACTATAGATTCTTTAAGCGGGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGAATCGCTGGAGGATTTCCTCCTAAATCTGCTTTGTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTTCAATAGGCCGATCGCTCTCGCTCATATACGATTTAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTGAGTTAAAAGCATATCCTTGAAACTAAATCATTTACCACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTTGTATCGGCGCTTTTGCGGAACCTGCCGACAATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATCAACCAGCACCGACACCAAGGGAAAACGTTGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGCCCAATTCACGCTAGATCGCGCTGTAGATACCATTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCTATCGATCGCCAGCGCCCGAAGCACTGACATTAACTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGAAAGAATAGATCAGATATATCTATTGTCATTTTGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGAGATTCCAGGGGCTAAATTTTTTAGGGCTTATGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATAGACGGGGTTCGACTCGTTGATAAAACACAATACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTCACGTTAAAGCCGTTGGGGAACGCCTTGGGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGAGACTCCTTCCCTTAACCTCTACGACGCGGGAACGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGCAAAAGATTCGAGAAGAAATTGCTAAATTAAGAGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGAAATTTCTCATCTGACAGGGTATTCCGCCCTGGCACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTTCTACAGCACAGCTAACAACCAAGAACAATTTATACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATATACTTTCTCGATCCGATTACGCTTGAGACATTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTGATTTAGAAAAAGAATATAAGTCCAACAAGCATTTTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTTTCAAGCGATTAATTAAGCTTTTATCGGAATCATTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATAAGCATTTCCTCCAACAATTCCCCAATCAAGAAGTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGATTGAGTGCTGTGTATCCATTGCCTCCTTCAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGCTTCGGCAACCGTTGGGCTGTACGCTCGATTCCCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGGTATCAGACGCACTATTCCGATAAGTTGTCATTAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCGGCAGCAACAATTGACGGGACAGATCTGGACGATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATTCCTCCTAGAGCGCTTTGCAGGGGAAGGGTTGAGTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCCGAGCGCCCCCAACAAAAGGAAGCGAGTCTATCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGAGAGCATTTCTCATCTCCAATGACTCGCTTTAGCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGAGGAATATTGCTGATGGGATGCGGAAATTTTTGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTTCTTCTTCTGTAAATTTTTGGGCAGTCGTCCAGCGTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAATGATCCAGATAAGCTTAAACCTAAATTTTGGGCTTGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGATAATTTAGACAAAGTTGGGCTATTCTTGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTAGACTGGCCTCAGTTTTTCTCTGATTTGTGGAACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAAATTTATGCGTATAAATCAATTTCATATCAAGTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAACAAACTCTAGCCCTTGAACGCATCGCCACCGCAATACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGGCGGTAAAAGTACAGTAGTATCTGGCGTTCCCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTGAACAGCCTTTCTGGGACGAGGATAATATTAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAGAGCGCTTGGGGAGGGGGCGCCCGCAGATCCGCGCAAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTGATGCCAAATTGGCGACAGCTTATCGTAAATGGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTAATTTCCTTAAAGTCAGCCCAACTTAACCCTACTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATCTATAGTCTGCTTATTAAACCTTATAAATGAGATAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATTCTGGATCGGGGTTCGGGTGTAACCCCCCGCTTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTAGACCCACCGTTCTTTGTCTGTTTTTCTCCTGAAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACGAGAGAATCGATAAACTCTCGCTTTTCTTGAGGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTCAATTGATCTAACTCAGAAGAGGGGGCGTAATGCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACATTCTTCTTACTGGTTTTCTGGCGGCTACTGTTTTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCGGAATTAGCTATTGATGAGGCTAACCGACCCGCTCGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCAAATAGGTTTAGCTGTCGTCAGTTATTATTGGGGGAAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTAAAGGTTCGGATGAGCAGGATTTATTAAGTATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTATTACGTTCCTGAACAGGAATGAGCCAAAAACTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATGGCCATTGAGGCACTATATCTAGGGAATTAAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACTTCAATTATAGGTATTCCTCCTATTTCTTGCGATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTAACCGAATAACTTCGGTTACTCCCTCAGACGGATTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATCTTCCAATTCTAATCGATGGTCAAAATGTCAATGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATGGATTCGATACTTATGAACATTGGGAATACTGGGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATCGTTGGGTGAGTTGTTATAGATCGCCCAACGCTTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGATCCGCCTGAATGGCAGCATATCAACCGAAATAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTCGAAAGAATCCAACATTTAAAGATATTTGCCAAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCATATCCGCTATTTTTCGGGTGTTTATTCGGAATTTTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGATATGCGCAGGCTTTTTCTAGCTCCTGCCCTGTTATGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGCCGAGATATGGGCTATTATTGGCTATGTTCACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACGTATCGGGCCAGATCCAGTTCTGGGCAAATTTTCCCTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAGAAAGGAGATACCGAGATCGTCGGCGAGTTGCCGCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTGGAAAAATTGCGATAGTTAAAATAAACCTTCAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGCTGCCGTTATCGTTCGCGTAGTTGACGTAATCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCTATAATTCCCCCCACCTTGATCCCAGGATCTAAAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTAATATTGATGTATATGTGTTATTTGCAAAGGTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTTAAATTTGCTAATTCTTCTCCTTGCAGAATAATACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCAACTCAAAAGATACCCGATACGTTGTTCAATACACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTATTACTTCCTGTAAATTTAAGATGAATCTTTTTAGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATATCTCATTATAACAATGCCGAGATATCTTGCCTGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTAATGGAGAAAGCGCATGGCTACCATTATTCTACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAATTAATTGAATCCAATCAATCCCTTTTAGATGCCTCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAGACATAAAAGAATTGTTTTTAAATCGACTAAAAATTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCCATGAACATTCGCACCAGAAAATAAAACACCAAGCTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATCGTAATGGCTGAGGAATTGTTAGAGCAAGGGCAGTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCTTTAAATTCCCCTTCGGAGTATCTCGAATAATCAGGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAAGGAACGAGCATTAACCCATAATTTTGCTGATATACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACATTGGACTTGAATCGAAAAGCGCCGCAAACCCGACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCTTCTAATACCACTTGGTTAAATATGTCTACGGATCCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTAATAAGCCTAATTCCCATTACGATAGGCTAATTTCTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACACGATCGCTTCTGCCCCCTCATCAACTTCCCCTAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCTAAAAGGGAAGCGCAAGACCCTAAAGGGCATTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAATCTAAAGTAGGTATTAAATGTTTTGCTATTAATACCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACAAATTTAACAATTACATTGTAGTATGTAATCCCTATGCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACTTGACATTCACGGTGAGGGGCAATCCTCACTCTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCGTCAATTTGGAACGATTTTATCGATAAGACAAGACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAACCAGGGAAAAGCTTTCTATCTTAGAGACTAAAACTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC

>NC_011729|11|4|1894683-1904400|PILER-CR
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATATTTATGGTGGTCGGCACAGTTTTATGAACAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATTTTCAGAAAATCCCGATGAATTTTTCCCTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTGAATTAACTTATCCGCAAGCTTGCGGCAAAAATTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAGCGATAGCGGTCAGGTTAGCCCGCCCTACCGATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAAGTCCATTAAGCCCCCTGGTTGTTGACTTCAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATCAGATCTTCGTCCAGATCCATGAATCCTCTCGAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTAGAATTGGATATTCTCGCCTAGAGGAAACTTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCTCAATTTCATACTGATACTATCAAGAAACAATCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTAAGCTAATTTTTTTGTTAGTGCCTGGCTTCTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTCGCACTGTTCGGTCGGTGCGTTTGATCCTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTTATTTTTTCTTGTTGGATTTTTTAATAATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTTCGGTTGTCCCTCTCCCGGATATTGCTAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGGACAGTTAGATTCAGCAGAAGGAAGAGGAGCAGCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCTACTAAGATGTTCCGTCACGTTGTCTTGGCAAACGTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTAGATTATTGATGCGCGGACTGGGAGCAACG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTTTATCGCGTTCCCTCGGTTGTACCTGTTCCGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTGATTTTCTGGTGTGAATGTTCGTGGAACTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TACGCTCCTTACGATCCTTCTGGGAGATTTCAGCAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACCGAGCGGACTTATGCGATCGTGCCTCGAATCTCTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGTCGAGATTTTGCTGTCCGAGATCAGCATCAAAAACA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACCGGATTAAACAGAGACACGATTCTCGACCTCAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGGTATTATGAGAGTGGCAACCTTCGAGGGTCTTGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AACAAAATAACAAAGAATAATAAAAAATATCTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCGATTAGTGGGAGAAACCTCTCAGACTATAAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTTTGCCCTTCTACCGTGAAGGTATGCCCTAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTACTGGCTTGGTAGCGGCAAAAGGAAAACAGCACAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GGCAAAGGCAAGCATTCATGGACTACCTCGGCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAAACAATAGTGTAATTCTAGATATTTATTAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTTGATTCGGTGGTTTTTTGTGTATCAATAAGGCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAAGACGTTAAGCCAGCCCGACTCAGAAAAAAAGAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTGAGGGAGCGATCGTGATCGATACGCGCCATTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTTCCTGTAGGGAGGGCTTGCCAATGATGGGTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTAATATTGATGGGACGGACAGCTTTGATCTTTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTGAATTGTGGCTTAATTTAGCCGTTTTGTCAGGCGCG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGACGATTTAATCGCATTAAGTACGCATGAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGATTTAATAATTGTTCTTTGTCGATACCGTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGACATGATAATCTAATAAGGATATGATAATAATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGAGTTAAAGATACACAAATGAAAGAATTTTTAAGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTTCAGGTTATTTAAATGCCTATCTTCGATTAGAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGATGTAACTTCTCTCCAATTAATAAACTTTAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATCTCTTTCCAATAGATTTGCCAAAAAGGAGGATAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGTCCCTGTGAAGCCTTGCCCCTTAATTGGGAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGGGAGTCGTCAAAGTACATCAGGTTGTATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATAATTAGCTCTAATTTAGAGGATAATTCTTGTTGAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCCCCCTGGTTATTTCTCATGAGCGTTATTCCTGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAATAACAGAGGCTAGAATTCTTTCTGGTATTGGGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTGCAACTCAAACAACTATAGATTCTTTAAGCGGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAATCGCTGGAGGATTTCCTCCTAAATCTGCTTTGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTCAATAGGCCGATCGCTCTCGCTCATATACGATTTAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGAGTTAAAAGCATATCCTTGAAACTAAATCATTTACCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTGTATCGGCGCTTTTGCGGAACCTGCCGACAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCAACCAGCACCGACACCAAGGGAAAACGTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCCCAATTCACGCTAGATCGCGCTGTAGATACCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTATCGATCGCCAGCGCCCGAAGCACTGACATTAACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAAAGAATAGATCAGATATATCTATTGTCATTTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGATTCCAGGGGCTAAATTTTTTAGGGCTTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATAGACGGGGTTCGACTCGTTGATAAAACACAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCACGTTAAAGCCGTTGGGGAACGCCTTGGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGACTCCTTCCCTTAACCTCTACGACGCGGGAACG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCAAAAGATTCGAGAAGAAATTGCTAAATTAAGAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAAATTTCTCATCTGACAGGGTATTCCGCCCTGGCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTCTACAGCACAGCTAACAACCAAGAACAATTTATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATACTTTCTCGATCCGATTACGCTTGAGACATTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGATTTAGAAAAAGAATATAAGTCCAACAAGCATTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTCAAGCGATTAATTAAGCTTTTATCGGAATCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATAAGCATTTCCTCCAACAATTCCCCAATCAAGAAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGATTGAGTGCTGTGTATCCATTGCCTCCTTCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCTTCGGCAACCGTTGGGCTGTACGCTCGATTCCC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGGTATCAGACGCACTATTCCGATAAGTTGTCATTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGCAGCAACAATTGACGGGACAGATCTGGACGAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTCCTCCTAGAGCGCTTTGCAGGGGAAGGGTTGAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCGAGCGCCCCCAACAAAAGGAAGCGAGTCTATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGAGCATTTCTCATCTCCAATGACTCGCTTTAGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGAGGAATATTGCTGATGGGATGCGGAAATTTTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTCTTCTTCTGTAAATTTTTGGGCAGTCGTCCAGCGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAT	GATCCAGATAAGCTTAAACCTAAATTTTGGGCTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGATAATTTAGACAAAGTTGGGCTATTCTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGACTGGCCTCAGTTTTTCTCTGATTTGTGGAAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAATTTATGCGTATAAATCAATTTCATATCAAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AACAAACTCTAGCCCTTGAACGCATCGCCACCGCAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGGCGGTAAAAGTACAGTAGTATCTGGCGTTCCC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTGAACAGCCTTTCTGGGACGAGGATAATATTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGAGCGCTTGGGGAGGGGGCGCCCGCAGATCCGCGCAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGATGCCAAATTGGCGACAGCTTATCGTAAATGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAATTTCCTTAAAGTCAGCCCAACTTAACCCTACTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCTATAGTCTGCTTATTAAACCTTATAAATGAGATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTCTGGATCGGGGTTCGGGTGTAACCCCCCGCTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGACCCACCGTTCTTTGTCTGTTTTTCTCCTGAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGAGAGAATCGATAAACTCTCGCTTTTCTTGAGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCAATTGATCTAACTCAGAAGAGGGGGCGTAATGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACATTCTTCTTACTGGTTTTCTGGCGGCTACTGTTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGAATTAGCTATTGATGAGGCTAACCGACCCGCTCG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAAATAGGTTTAGCTGTCGTCAGTTATTATTGGGGGAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTAAAGGTTCGGATGAGCAGGATTTATTAAGTAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TATTACGTTCCTGAACAGGAATGAGCCAAAAACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATGGCCATTGAGGCACTATATCTAGGGAATTAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTTCAATTATAGGTATTCCTCCTATTTCTTGCGAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAACCGAATAACTTCGGTTACTCCCTCAGACGGATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCTTCCAATTCTAATCGATGGTCAAAATGTCAATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATGGATTCGATACTTATGAACATTGGGAATACTGGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGTTGGGTGAGTTGTTATAGATCGCCCAACGCTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATCCGCCTGAATGGCAGCATATCAACCGAAATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGAAAGAATCCAACATTTAAAGATATTTGCCAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATATCCGCTATTTTTCGGGTGTTTATTCGGAATTTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATATGCGCAGGCTTTTTCTAGCTCCTGCCCTGTTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGCCGAGATATGGGCTATTATTGGCTATGTTCAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTATCGGGCCAGATCCAGTTCTGGGCAAATTTTCCCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGAAAGGAGATACCGAGATCGTCGGCGAGTTGCCGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGGAAAAATTGCGATAGTTAAAATAAACCTTCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGCTGCCGTTATCGTTCGCGTAGTTGACGTAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTATAATTCCCCCCACCTTGATCCCAGGATCTAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAATATTGATGTATATGTGTTATTTGCAAAGGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTAAATTTGCTAATTCTTCTCCTTGCAGAATAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAACTCAAAAGATACCCGATACGTTGTTCAATACA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTATTACTTCCTGTAAATTTAAGATGAATCTTTTTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATCTCATTATAACAATGCCGAGATATCTTGCCTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAATGGAGAAAGCGCATGGCTACCATTATTCTAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATTAATTGAATCCAATCAATCCCTTTTAGATGCCTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGACATAAAAGAATTGTTTTTAAATCGACTAAAAATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCATGAACATTCGCACCAGAAAATAAAACACCAAGCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGTAATGGCTGAGGAATTGTTAGAGCAAGGGCAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTTAAATTCCCCTTCGGAGTATCTCGAATAATCAGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAGGAACGAGCATTAACCCATAATTTTGCTGATATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTGGACTTGAATCGAAAAGCGCCGCAAACCCGAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTCTAATACCACTTGGTTAAATATGTCTACGGATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAATAAGCCTAATTCCCATTACGATAGGCTAATTTCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGATCGCTTCTGCCCCCTCATCAACTTCCCCTAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTAAAAGGGAAGCGCAAGACCCTAAAGGGCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATCTAAAGTAGGTATTAAATGTTTTGCTATTAATAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAATTTAACAATTACATTGTAGTATGTAATCCCTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGACATTCACGGTGAGGGGCAATCCTCACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGTCAATTTGGAACGATTTTATCGATAAGACAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAGGGAAAAGCTTTCTATCTTAGAGACTAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC

>NC_011729|11|10|1894683-1904400|CRISPRCasFinder
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATATTTATGGTGGTCGGCACAGTTTTATGAACAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATTTTCAGAAAATCCCGATGAATTTTTCCCTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTGAATTAACTTATCCGCAAGCTTGCGGCAAAAATTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAGCGATAGCGGTCAGGTTAGCCCGCCCTACCGATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAAGTCCATTAAGCCCCCTGGTTGTTGACTTCAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATCAGATCTTCGTCCAGATCCATGAATCCTCTCGAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTAGAATTGGATATTCTCGCCTAGAGGAAACTTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCTCAATTTCATACTGATACTATCAAGAAACAATCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTAAGCTAATTTTTTTGTTAGTGCCTGGCTTCTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTCGCACTGTTCGGTCGGTGCGTTTGATCCTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTTATTTTTTCTTGTTGGATTTTTTAATAATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTTCGGTTGTCCCTCTCCCGGATATTGCTAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGGACAGTTAGATTCAGCAGAAGGAAGAGGAGCAGCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCTACTAAGATGTTCCGTCACGTTGTCTTGGCAAACGTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTAGATTATTGATGCGCGGACTGGGAGCAACG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTTTATCGCGTTCCCTCGGTTGTACCTGTTCCGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTGATTTTCTGGTGTGAATGTTCGTGGAACTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TACGCTCCTTACGATCCTTCTGGGAGATTTCAGCAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACCGAGCGGACTTATGCGATCGTGCCTCGAATCTCTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGTCGAGATTTTGCTGTCCGAGATCAGCATCAAAAACA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACCGGATTAAACAGAGACACGATTCTCGACCTCAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGGTATTATGAGAGTGGCAACCTTCGAGGGTCTTGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AACAAAATAACAAAGAATAATAAAAAATATCTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCGATTAGTGGGAGAAACCTCTCAGACTATAAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTTTGCCCTTCTACCGTGAAGGTATGCCCTAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTACTGGCTTGGTAGCGGCAAAAGGAAAACAGCACAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GGCAAAGGCAAGCATTCATGGACTACCTCGGCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAAACAATAGTGTAATTCTAGATATTTATTAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTTGATTCGGTGGTTTTTTGTGTATCAATAAGGCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAAGACGTTAAGCCAGCCCGACTCAGAAAAAAAGAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTGAGGGAGCGATCGTGATCGATACGCGCCATTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTTCCTGTAGGGAGGGCTTGCCAATGATGGGTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTAATATTGATGGGACGGACAGCTTTGATCTTTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTGAATTGTGGCTTAATTTAGCCGTTTTGTCAGGCGCG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGACGATTTAATCGCATTAAGTACGCATGAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGATTTAATAATTGTTCTTTGTCGATACCGTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGACATGATAATCTAATAAGGATATGATAATAATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGAGTTAAAGATACACAAATGAAAGAATTTTTAAGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTTCAGGTTATTTAAATGCCTATCTTCGATTAGAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGATGTAACTTCTCTCCAATTAATAAACTTTAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATCTCTTTCCAATAGATTTGCCAAAAAGGAGGATAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGTCCCTGTGAAGCCTTGCCCCTTAATTGGGAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGGGAGTCGTCAAAGTACATCAGGTTGTATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATAATTAGCTCTAATTTAGAGGATAATTCTTGTTGAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCCCCCTGGTTATTTCTCATGAGCGTTATTCCTGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAATAACAGAGGCTAGAATTCTTTCTGGTATTGGGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTGCAACTCAAACAACTATAGATTCTTTAAGCGGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAATCGCTGGAGGATTTCCTCCTAAATCTGCTTTGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTCAATAGGCCGATCGCTCTCGCTCATATACGATTTAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGAGTTAAAAGCATATCCTTGAAACTAAATCATTTACCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTGTATCGGCGCTTTTGCGGAACCTGCCGACAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCAACCAGCACCGACACCAAGGGAAAACGTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCCCAATTCACGCTAGATCGCGCTGTAGATACCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTATCGATCGCCAGCGCCCGAAGCACTGACATTAACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAAAGAATAGATCAGATATATCTATTGTCATTTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGATTCCAGGGGCTAAATTTTTTAGGGCTTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATAGACGGGGTTCGACTCGTTGATAAAACACAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCACGTTAAAGCCGTTGGGGAACGCCTTGGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGACTCCTTCCCTTAACCTCTACGACGCGGGAACG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCAAAAGATTCGAGAAGAAATTGCTAAATTAAGAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAAATTTCTCATCTGACAGGGTATTCCGCCCTGGCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTCTACAGCACAGCTAACAACCAAGAACAATTTATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATACTTTCTCGATCCGATTACGCTTGAGACATTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGATTTAGAAAAAGAATATAAGTCCAACAAGCATTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTCAAGCGATTAATTAAGCTTTTATCGGAATCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATAAGCATTTCCTCCAACAATTCCCCAATCAAGAAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGATTGAGTGCTGTGTATCCATTGCCTCCTTCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCTTCGGCAACCGTTGGGCTGTACGCTCGATTCCC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGGTATCAGACGCACTATTCCGATAAGTTGTCATTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGCAGCAACAATTGACGGGACAGATCTGGACGAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTCCTCCTAGAGCGCTTTGCAGGGGAAGGGTTGAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCGAGCGCCCCCAACAAAAGGAAGCGAGTCTATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGAGCATTTCTCATCTCCAATGACTCGCTTTAGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGAGGAATATTGCTGATGGGATGCGGAAATTTTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTCTTCTTCTGTAAATTTTTGGGCAGTCGTCCAGCGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAT	GATCCAGATAAGCTTAAACCTAAATTTTGGGCTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGATAATTTAGACAAAGTTGGGCTATTCTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGACTGGCCTCAGTTTTTCTCTGATTTGTGGAAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAATTTATGCGTATAAATCAATTTCATATCAAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AACAAACTCTAGCCCTTGAACGCATCGCCACCGCAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGGCGGTAAAAGTACAGTAGTATCTGGCGTTCCC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTGAACAGCCTTTCTGGGACGAGGATAATATTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGAGCGCTTGGGGAGGGGGCGCCCGCAGATCCGCGCAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGATGCCAAATTGGCGACAGCTTATCGTAAATGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAATTTCCTTAAAGTCAGCCCAACTTAACCCTACTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCTATAGTCTGCTTATTAAACCTTATAAATGAGATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTCTGGATCGGGGTTCGGGTGTAACCCCCCGCTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGACCCACCGTTCTTTGTCTGTTTTTCTCCTGAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGAGAGAATCGATAAACTCTCGCTTTTCTTGAGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCAATTGATCTAACTCAGAAGAGGGGGCGTAATGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACATTCTTCTTACTGGTTTTCTGGCGGCTACTGTTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGAATTAGCTATTGATGAGGCTAACCGACCCGCTCG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAAATAGGTTTAGCTGTCGTCAGTTATTATTGGGGGAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTAAAGGTTCGGATGAGCAGGATTTATTAAGTAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TATTACGTTCCTGAACAGGAATGAGCCAAAAACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATGGCCATTGAGGCACTATATCTAGGGAATTAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTTCAATTATAGGTATTCCTCCTATTTCTTGCGAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAACCGAATAACTTCGGTTACTCCCTCAGACGGATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCTTCCAATTCTAATCGATGGTCAAAATGTCAATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATGGATTCGATACTTATGAACATTGGGAATACTGGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGTTGGGTGAGTTGTTATAGATCGCCCAACGCTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATCCGCCTGAATGGCAGCATATCAACCGAAATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGAAAGAATCCAACATTTAAAGATATTTGCCAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATATCCGCTATTTTTCGGGTGTTTATTCGGAATTTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATATGCGCAGGCTTTTTCTAGCTCCTGCCCTGTTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGCCGAGATATGGGCTATTATTGGCTATGTTCAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTATCGGGCCAGATCCAGTTCTGGGCAAATTTTCCCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGAAAGGAGATACCGAGATCGTCGGCGAGTTGCCGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGGAAAAATTGCGATAGTTAAAATAAACCTTCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGCTGCCGTTATCGTTCGCGTAGTTGACGTAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTATAATTCCCCCCACCTTGATCCCAGGATCTAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAATATTGATGTATATGTGTTATTTGCAAAGGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTAAATTTGCTAATTCTTCTCCTTGCAGAATAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAACTCAAAAGATACCCGATACGTTGTTCAATACA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTATTACTTCCTGTAAATTTAAGATGAATCTTTTTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATCTCATTATAACAATGCCGAGATATCTTGCCTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAATGGAGAAAGCGCATGGCTACCATTATTCTAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATTAATTGAATCCAATCAATCCCTTTTAGATGCCTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGACATAAAAGAATTGTTTTTAAATCGACTAAAAATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCATGAACATTCGCACCAGAAAATAAAACACCAAGCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGTAATGGCTGAGGAATTGTTAGAGCAAGGGCAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTTAAATTCCCCTTCGGAGTATCTCGAATAATCAGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAGGAACGAGCATTAACCCATAATTTTGCTGATATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTGGACTTGAATCGAAAAGCGCCGCAAACCCGAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTCTAATACCACTTGGTTAAATATGTCTACGGATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAATAAGCCTAATTCCCATTACGATAGGCTAATTTCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGATCGCTTCTGCCCCCTCATCAACTTCCCCTAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTAAAAGGGAAGCGCAAGACCCTAAAGGGCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATCTAAAGTAGGTATTAAATGTTTTGCTATTAATAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAATTTAACAATTACATTGTAGTATGTAATCCCTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGACATTCACGGTGAGGGGCAATCCTCACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGTCAATTTGGAACGATTTTATCGATAAGACAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAGGGAAAAGCTTTCTATCTTAGAGACTAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC

>NC_011729|11|3|1894683-1904400|CRT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATATTTATGGTGGTCGGCACAGTTTTATGAACAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATTTTCAGAAAATCCCGATGAATTTTTCCCTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTGAATTAACTTATCCGCAAGCTTGCGGCAAAAATTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAGCGATAGCGGTCAGGTTAGCCCGCCCTACCGATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAAGTCCATTAAGCCCCCTGGTTGTTGACTTCAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATCAGATCTTCGTCCAGATCCATGAATCCTCTCGAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTAGAATTGGATATTCTCGCCTAGAGGAAACTTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCTCAATTTCATACTGATACTATCAAGAAACAATCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTAAGCTAATTTTTTTGTTAGTGCCTGGCTTCTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTCGCACTGTTCGGTCGGTGCGTTTGATCCTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTTATTTTTTCTTGTTGGATTTTTTAATAATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTTCGGTTGTCCCTCTCCCGGATATTGCTAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGGACAGTTAGATTCAGCAGAAGGAAGAGGAGCAGCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCTACTAAGATGTTCCGTCACGTTGTCTTGGCAAACGTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTAGATTATTGATGCGCGGACTGGGAGCAACG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTTTATCGCGTTCCCTCGGTTGTACCTGTTCCGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTGATTTTCTGGTGTGAATGTTCGTGGAACTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TACGCTCCTTACGATCCTTCTGGGAGATTTCAGCAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACCGAGCGGACTTATGCGATCGTGCCTCGAATCTCTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGTCGAGATTTTGCTGTCCGAGATCAGCATCAAAAACA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACCGGATTAAACAGAGACACGATTCTCGACCTCAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGGTATTATGAGAGTGGCAACCTTCGAGGGTCTTGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AACAAAATAACAAAGAATAATAAAAAATATCTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCGATTAGTGGGAGAAACCTCTCAGACTATAAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTTTGCCCTTCTACCGTGAAGGTATGCCCTAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTACTGGCTTGGTAGCGGCAAAAGGAAAACAGCACAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GGCAAAGGCAAGCATTCATGGACTACCTCGGCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAAACAATAGTGTAATTCTAGATATTTATTAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTTGATTCGGTGGTTTTTTGTGTATCAATAAGGCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAAGACGTTAAGCCAGCCCGACTCAGAAAAAAAGAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTGAGGGAGCGATCGTGATCGATACGCGCCATTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTTCCTGTAGGGAGGGCTTGCCAATGATGGGTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTAATATTGATGGGACGGACAGCTTTGATCTTTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTGAATTGTGGCTTAATTTAGCCGTTTTGTCAGGCGCG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGACGATTTAATCGCATTAAGTACGCATGAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGATTTAATAATTGTTCTTTGTCGATACCGTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGACATGATAATCTAATAAGGATATGATAATAATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGAGTTAAAGATACACAAATGAAAGAATTTTTAAGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCTTCAGGTTATTTAAATGCCTATCTTCGATTAGAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGATGTAACTTCTCTCCAATTAATAAACTTTAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATCTCTTTCCAATAGATTTGCCAAAAAGGAGGATAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGTCCCTGTGAAGCCTTGCCCCTTAATTGGGAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGGGAGTCGTCAAAGTACATCAGGTTGTATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATAATTAGCTCTAATTTAGAGGATAATTCTTGTTGAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCCCCCTGGTTATTTCTCATGAGCGTTATTCCTGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAATAACAGAGGCTAGAATTCTTTCTGGTATTGGGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTGCAACTCAAACAACTATAGATTCTTTAAGCGGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAATCGCTGGAGGATTTCCTCCTAAATCTGCTTTGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTCAATAGGCCGATCGCTCTCGCTCATATACGATTTAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGAGTTAAAAGCATATCCTTGAAACTAAATCATTTACCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTGTATCGGCGCTTTTGCGGAACCTGCCGACAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCAACCAGCACCGACACCAAGGGAAAACGTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCCCAATTCACGCTAGATCGCGCTGTAGATACCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTATCGATCGCCAGCGCCCGAAGCACTGACATTAACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAAAGAATAGATCAGATATATCTATTGTCATTTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGATTCCAGGGGCTAAATTTTTTAGGGCTTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATAGACGGGGTTCGACTCGTTGATAAAACACAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCACGTTAAAGCCGTTGGGGAACGCCTTGGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGACTCCTTCCCTTAACCTCTACGACGCGGGAACG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCAAAAGATTCGAGAAGAAATTGCTAAATTAAGAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAAATTTCTCATCTGACAGGGTATTCCGCCCTGGCA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTCTACAGCACAGCTAACAACCAAGAACAATTTATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATACTTTCTCGATCCGATTACGCTTGAGACATTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGATTTAGAAAAAGAATATAAGTCCAACAAGCATTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTTTCAAGCGATTAATTAAGCTTTTATCGGAATCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATAAGCATTTCCTCCAACAATTCCCCAATCAAGAAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGATTGAGTGCTGTGTATCCATTGCCTCCTTCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GCTTCGGCAACCGTTGGGCTGTACGCTCGATTCCC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGGTATCAGACGCACTATTCCGATAAGTTGTCATTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGCAGCAACAATTGACGGGACAGATCTGGACGAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTCCTCCTAGAGCGCTTTGCAGGGGAAGGGTTGAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCGAGCGCCCCCAACAAAAGGAAGCGAGTCTATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GAGAGCATTTCTCATCTCCAATGACTCGCTTTAGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGAGGAATATTGCTGATGGGATGCGGAAATTTTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTCTTCTTCTGTAAATTTTTGGGCAGTCGTCCAGCGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAT	GATCCAGATAAGCTTAAACCTAAATTTTGGGCTTG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGATAATTTAGACAAAGTTGGGCTATTCTTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGACTGGCCTCAGTTTTTCTCTGATTTGTGGAAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAATTTATGCGTATAAATCAATTTCATATCAAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AACAAACTCTAGCCCTTGAACGCATCGCCACCGCAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGGCGGTAAAAGTACAGTAGTATCTGGCGTTCCC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTGAACAGCCTTTCTGGGACGAGGATAATATTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGAGCGCTTGGGGAGGGGGCGCCCGCAGATCCGCGCAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGATGCCAAATTGGCGACAGCTTATCGTAAATGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAATTTCCTTAAAGTCAGCCCAACTTAACCCTACTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCTATAGTCTGCTTATTAAACCTTATAAATGAGATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTCTGGATCGGGGTTCGGGTGTAACCCCCCGCTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAGACCCACCGTTCTTTGTCTGTTTTTCTCCTGAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGAGAGAATCGATAAACTCTCGCTTTTCTTGAGGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTCAATTGATCTAACTCAGAAGAGGGGGCGTAATGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACATTCTTCTTACTGGTTTTCTGGCGGCTACTGTTTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGGAATTAGCTATTGATGAGGCTAACCGACCCGCTCG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAAATAGGTTTAGCTGTCGTCAGTTATTATTGGGGGAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTAAAGGTTCGGATGAGCAGGATTTATTAAGTAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TATTACGTTCCTGAACAGGAATGAGCCAAAAACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATGGCCATTGAGGCACTATATCTAGGGAATTAAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACTTCAATTATAGGTATTCCTCCTATTTCTTGCGAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAACCGAATAACTTCGGTTACTCCCTCAGACGGATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCTTCCAATTCTAATCGATGGTCAAAATGTCAATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATGGATTCGATACTTATGAACATTGGGAATACTGGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGTTGGGTGAGTTGTTATAGATCGCCCAACGCTT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATCCGCCTGAATGGCAGCATATCAACCGAAATAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TCGAAAGAATCCAACATTTAAAGATATTTGCCAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CATATCCGCTATTTTTCGGGTGTTTATTCGGAATTTTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GATATGCGCAGGCTTTTTCTAGCTCCTGCCCTGTTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGCCGAGATATGGGCTATTATTGGCTATGTTCAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	GTATCGGGCCAGATCCAGTTCTGGGCAAATTTTCCCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGAAAGGAGATACCGAGATCGTCGGCGAGTTGCCGC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TGGAAAAATTGCGATAGTTAAAATAAACCTTCAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGCTGCCGTTATCGTTCGCGTAGTTGACGTAAT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTATAATTCCCCCCACCTTGATCCCAGGATCTAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTAATATTGATGTATATGTGTTATTTGCAAAGGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTTAAATTTGCTAATTCTTCTCCTTGCAGAATAATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAACTCAAAAGATACCCGATACGTTGTTCAATACA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTATTACTTCCTGTAAATTTAAGATGAATCTTTTTAG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATATCTCATTATAACAATGCCGAGATATCTTGCCTGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAATGGAGAAAGCGCATGGCTACCATTATTCTAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATTAATTGAATCCAATCAATCCCTTTTAGATGCCTC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AGACATAAAAGAATTGTTTTTAAATCGACTAAAAATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CCATGAACATTCGCACCAGAAAATAAAACACCAAGCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATCGTAATGGCTGAGGAATTGTTAGAGCAAGGGCAGT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTTAAATTCCCCTTCGGAGTATCTCGAATAATCAGG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAGGAACGAGCATTAACCCATAATTTTGCTGATATA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ATTGGACTTGAATCGAAAAGCGCCGCAAACCCGAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTTCTAATACCACTTGGTTAAATATGTCTACGGATC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TAATAAGCCTAATTCCCATTACGATAGGCTAATTTCT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	ACGATCGCTTCTGCCCCCTCATCAACTTCCCCTAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CTAAAAGGGAAGCGCAAGACCCTAAAGGGCATT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AATCTAAAGTAGGTATTAAATGTTTTGCTATTAATAC
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	AAATTTAACAATTACATTGTAGTATGTAATCCCTATG
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	TTGACATTCACGGTGAGGGGCAATCCTCACT
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CGTCAATTTGGAACGATTTTATCGATAAGACAAGA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC	CAGGGAAAAGCTTTCTATCTTAGAGACTAAAA
CTTTCTATTTAATGAATCCTGGTAACGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_012599090.1\|1884117_1886298_+\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_011729.1\|WP_012599098.1\|1904518_1905289_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372807
NC_011729.1\|WP_157867374.1\|1912780_1912933_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_012599097.1\|1894146_1894440_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011729.1\|WP_012599094.1\|1891611_1892427_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|337605
NC_011729.1\|WP_012599104.1\|1912295_1912697_-\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|377431
NC_011729.1\|WP_012599093.1\|1890878_1891640_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|187842
NC_011729.1\|WP_012599100.1\|1906253_1906625_-\|response-regulator	unknown	unknown	gnl\|CDD\|381104
NC_011729.1\|WP_012599089.1\|1883624_1883870_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041237685.1\|1882840_1883296_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_011729.1\|WP_012599092.1\|1889405_1890422_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_011729.1\|WP_012599102.1\|1908779_1909562_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NC_011729.1\|WP_157867556.1\|1913168_1914848_-\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NC_011729.1\|WP_012599103.1\|1909852_1912210_-\|putative-baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|274051
NC_011729.1\|WP_012599099.1\|1905467_1906148_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_011729.1\|WP_012599095.1\|1892429_1893032_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_011729.1\|WP_012599101.1\|1906807_1908601_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NC_011729.1\|WP_041238097.1\|1886386_1889371_+\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl\|CDD\|187843
NC_011729.1\|WP_012599106.1\|1915353_1915857_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_011729.1\|WP_012599096.1\|1893172_1894150_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_012599090.1\|1884117_1886298_+\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	3.37377e-57
NC_011729.1\|WP_012599098.1\|1904518_1905289_-\|hypothetical-protein	gnl\|CDD\|372807	pfam13911, AhpC-TSA_2, AhpC/TSA antioxidant enzyme. This family contains proteins related to alkyl hydro-peroxide reductase (AhpC) and thiol specific antioxidant (TSA).	2.06721e-12
NC_011729.1\|WP_012599097.1\|1894146_1894440_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.69333e-27
NC_011729.1\|WP_012599094.1\|1891611_1892427_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	2.5229e-14
NC_011729.1\|WP_012599104.1\|1912295_1912697_-\|GPW/gp25-family-protein	gnl\|CDD\|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	8.62277e-24
NC_011729.1\|WP_012599093.1\|1890878_1891640_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|187842	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog; also known as CasA/Cse1 family.	5.9537e-61
NC_011729.1\|WP_012599100.1\|1906253_1906625_-\|response-regulator	gnl\|CDD\|381104	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains. Thermotoga maritima RR468 (encoded by gene TM0468) is the cognate response regulator (RR) of the class I histidine kinase HK853 (product of gene TM0853). HK853/RR468 comprise a two-component system (TCS) that couples environmental stimuli to adaptive responses. This subfamily also includes Fremyella diplosiphon complementary adaptation response regulator homolog RcaF, a small RR that is involved in four-step phosphorelays of the complementary chromatic adaptation (CCA) system that occurs in many cyanobacteria. Both RR468 and RcaF are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.97645e-64
NC_011729.1\|WP_157867556.1\|1913168_1914848_-\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	9.17629e-13
NC_011729.1\|WP_041237685.1\|1882840_1883296_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.12928e-50
NC_011729.1\|WP_012599092.1\|1889405_1890422_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	0
NC_011729.1\|WP_012599102.1\|1908779_1909562_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	4.3155e-129
NC_011729.1\|WP_012599103.1\|1909852_1912210_-\|putative-baseplate-assembly-protein	gnl\|CDD\|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	3.60719e-160
NC_011729.1\|WP_012599099.1\|1905467_1906148_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.85217e-13
NC_011729.1\|WP_012599095.1\|1892429_1893032_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.29275e-35
NC_011729.1\|WP_012599101.1\|1906807_1908601_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.09126e-72
NC_011729.1\|WP_041238097.1\|1886386_1889371_+\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl\|CDD\|187843	cd09712, Cas10d_I-D, CRISPR/Cas system-associated protein Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain. Fused to N-terminal HD domain; signature gene for I-D subtype; also known as Csc3 family.	0
NC_011729.1\|WP_012599106.1\|1915353_1915857_-\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	3.46308e-33
NC_011729.1\|WP_012599096.1\|1893172_1894150_+\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	6.0631e-146

>NC_011729.1|WP_012599097.1|1894146_1894440_+|CRISPR-associated-endonuclease-Cas2
MSQLFYLIIYDLPDSKEANKRRKRLHDLLSGFGKWTQYSVFECFLTKVQFVKLQQQIESLIKPDEDSVRIYILDASAVQKTITYGSHKPRHEEVIIL
>NC_011729.1|WP_012599096.1|1893172_1894150_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MSVLYITQPDGVLSKKQEAFNVALKQEDGSWQKQSIAAQTVEQIVLIGQPSITGEALSYALELGIPVHYLSSFGKYLGSALPGFSRNGQLRLAQYAVHNDNDKRLALVKTIVRGKIHNQYRLLYRYGQNQNSLKLRKKSVQNQSNLNQVRGVEGIAAREYFQELSNILEDQWKFNGRNRRPPRDPINALLSFAYGLLRVQVTAAVHLAGLDPYIGYLHDTTRGQPAMVLDLMEEFRPLIADSLVLSIISHKEINADDFEESLGAYRLLDGGRKAFLQGFERKMSSEFKHPLFGYQCTYRRAVELQARLLSRHLQEEVPYQSFRIR
>NC_011729.1|WP_012599095.1|1892429_1893032_+|CRISPR-associated-protein-Cas4
MNDDYLPLAYLNAWEYCPRRFYWEYVLGEMADNEHILMGRYLHRNVNQEGISQEGDTLCHRQQWVWSDRLQVKGIIDLVEEREDQLLPVEYKKGRMAKHLNDYFQLCAAAICLEEKTGNPISYGEIFYQGNRRRQRVNFTDQLRQATEEAIFQAHRLVNDKMPPPINHSQKCRDCSLKDICLPKEVHRLYQGCKLDDDDD
>NC_011729.1|WP_012599094.1|1891611_1892427_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MVQNNSSPPKEAYKLYSIIIELGAARSGNPPATLGRAIHAQVLHWIQLGDPQLAETIHTSQNPPISLSGLQGNRRKEKNYAGDRFYFRICFLQGHLIQPLLKGIEAWGEEKLILGQFPFVIRQCYFLSGTHSLARSTDYENLVNHSPVSQTISLSFLSPTSFKQQKHIQLLLTPDLVFNSLLRKWNSFAPEELHFPLIEWDGFVSAFDLRSYALKMEGGAEVGSQGWVKYCFSDSEQARIASILAQFAFYSGVGRKTTMGMGQVQLLLRNN
>NC_011729.1|WP_012599093.1|1890878_1891640_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MKIYLCLLTLHDNVFFATREMGILFETEKYLHNWALSYALFKGIVIPHPYRLQGDLAQKPDYLDESREQNLIHLNQAKIYVFPAKPIIWSYQINTFKAAQVSYYGKSEQFEAPNYPKNYGRAKELAVGSQYHTYLIASDTVTIPQWIRLGKWSAKVHVQAFLIPDTAIKSLSGDYICDHPLNPIDLSPDTQLILYNRIVMPPVSLITQAQLQGNYWQLSGDDWKALKSSIPHLPNQVNLPQGVMYGAKQLITA
>NC_011729.1|WP_012599092.1|1889405_1890422_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSILETIKPDFKTAFPRLATGKYVHFIMIRHSQSFPVFQTDGILNTARTQAGLSNTEKISRLVMFKRKQTTPERLAGRELLRSVGLTSADKTADNLCEYNGEGTCKKCPDCIIYGFAIGDSGSERSKVYSDSAFSLSPYEESHRSFTFNAPFEGGTMSEAGEMRSAINELDHILPEVTFPTVETLRDSTYEGFIYVLGNLLRTRRYGAQETRTGTMSNHLIGIVFADGEIFSNLYFTQALYDALKLKGDINAPINDICVEAKNVAETLLNQEPVRKSQVIFEPDLQTLLTEVSSIYQNEEDLTNTLTALYQQTTSYAESFGALAGKKKTSKKKSTKEE
>NC_011729.1|WP_041238097.1|1886386_1889371_+|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MSNSSKKTLLQTLLLRTLADNEDPDSILRHYIKTIVPAMEKEFSSTYAMGGNEEDHYRRLVPKHGVEKAREIAMQRANKADQSLFVHVLNALFIGWRLSKYLPPKIQLTDVEKKLFCLGITLHDYGKQHYEKEQESPRAYQVREIIQACENLGEQLNFNEFWPEWKDYLTEIAFLAQNTQFKVGANSVPSNWEINGCRFLIDENRLDNLCHLLAFGDVSVHLSDPSDIIKLKAGNKKRSSGDALQDHIELLGISKKLVYHRLRDCRGILTNGIHNIMLDYAKTLDWIPLIFFAQGAVYLAPLDSQVPDLENLQKFIWKRIKIFLIDRMKSGEIGFKRDGKGLKISPQTLELFSASDLILTLPSVIKATVRNEKAATPKRLEKLDLDESEKDLFNYADLRSDRLAEFIILAQRELFSTIEDYPDFILQALDLEAKIPVEKTQIQSGGVNYGWYYVAAHYIANNGTWDEEQTQQAITELAEKLAEWAETNNLLPENNNPTREIFFDYLNQYLDVSDCQIKVPDFTQELSNYTLSKAKNKAICSLSGGEFIAEDQMDSVVIWKPQQYSNKNPLGGSRTKRGISKIWSLEMLLRQAQWTGRNNQVNKLEDQKPIFLYIFPAYVYSPETIRAVGRLIQGELIDINLWNVKKCWLDGNMKNEALQNLTWLEDDEENQESKLAKYSSIDLPFMATNYTKTRGKTDTDAWVKPAFLALALPQLLGVKVVATSSPDPLYASDQEFVETVKFDGVAGFWNLLGLSSNLRLQEIQPALTKLLIVYSLHLDNRSNPPDERWQALNSTVREVMTDVLNIFAIANEGLRNKKRDPYSEEVERYWQFAQIFSHGDSKMTEKLKKTKDLVNYSRTFYQVKLSDSSHSILLPISKALEIILSTPENIDNEDLIFQGAGQLHDALDRQEVYKRPLLQNKSIPYETRKNQELEAIYQFMRFCVEEVFCQMYKGDKALLQENRNRIKSGAEFAYRWLTLEEQKQEQVTSESIDS
>NC_011729.1|WP_012599090.1|1884117_1886298_+|type-I-D-CRISPR-associated-helicase-Cas3'
MQIHLKPLYSKLNAGVGNCPLECTQQCRVRKESTLGKDSNYPCPLSLHQAETCAEILQGDADIIFNTSATGDGKSLAAYLAALIKPDFQIMGLYPTIELIEDQYRHLEGCYQLFDINQRDNVDFNTWCNLLYGSELAKRVKESEKNKFQELWRMIKSSRITSPILLTNPDIFHLITHSRYLDIAYDPFNLIGTLARDIDLWVFDEFHIFGAHQETAVLNSLLLIKSTQQKPKKFLFTSATPKEDFIKHLKQAGFNPKIIGGQDYYTDQKTDELKFRPIIQPIKLEFVQLPENDTLLWLQESKDTIQQLLQKEVKGRGLIIVNSVALAGKIVRQLRDLFEDQIRVEEISGRISRKQRKETQEALINELKPVLVVGTSAVDVGVDFKIHLLIFETSDSATVTQRLGRLGRHKGFSNYHAFILIPKRTPWILSRLEKEFTAGETYSRPEFQEKIETCLNAPQEFWQYRYRWGIKQVQGMLHQLSKGNKERQGVMQPVVDKMKASLIKLYPGLNSFNYWQDNPKNPLQKMTQEQLLSFRGSSNLQAAVWDNANHNHNFYTYDLLRLLPYTEVEVIDRETFTHAAQLAGHIEEEFPDEYIQVYLKIHQDSWLEQRQEIELKTKLDPDILKTCTLSILSKMSIINHPQASEINAYLNRKKILAFLIPLANNSHWDIKQMLYLKPTFGLYQLTDLDNQRYACAFNHDALLLDALAQCKKLKEYCQAHSQPLFF
>NC_011729.1|WP_012599089.1|1883624_1883870_+|hypothetical-protein
MNNNKQTPLFQWGDDGWQVNVTLIAERKSAPKKITINDVQALTKLPLHRLPRRKGEFIIWKSYRILRLAKDSWEIYPKMSL
>NC_011729.1|WP_041237685.1|1882840_1883296_-|DUF29-domain-containing-protein
MPKLPTRIDLKNLYETDDHLWLEETIKLLNANRLDELDVENLIEELEYLGRKDKNQAESLLEQVIRHLLLLQYWSEESENNAAHWEAEIESFRTQLRRHLTTNLRQHLEQELNVIYQDALRYVTKKTRLNIFPVTCPYTLEQLLDENRLPC
>NC_011729.1|WP_012599098.1|1904518_1905289_-|hypothetical-protein
MNSYAIFNQTQCQRVSDGKSVPILSGSQSATYLLVLVWPQLGDFDTLEYAWWLKRESIEIQNRGIVIRAVAIGNRASGQKFCDYTGFPAESLFVTPKPELHQKLELYQGLCRKFPLLSTSQNAWVNLMLMCAGIGSPGTLGEVFRGYRGDRQAPQLIDDEEVIDTGVLPPLKGSFFQFAGGKGFQRPFELATLRLRNMTEVLSNWKTYVPDSSYLTQRGGTFLFDQTGNLVYEHRDRGILDFAADKSRPLSFLSSL
>NC_011729.1|WP_012599099.1|1905467_1906148_-|class-I-SAM-dependent-methyltransferase
MNQDPIEQIKRSWEANAPAWTEAVRSGAIESRTLATNAAIVQALWERTPRLVLDLGCGEGWLTRILRERGIEAVGVDGSAQLIELAQEKGGGIFHHYSYAEIIATPEILGGDFDAIACNFALLEPDILPLLKSLHSCLTPEGVLIIQTVHPWSGRGEDKYSDGWRIETFASFGQGFTEAMPWYFRTLSSWISLLSSGGYFLDDLREPAHPDSGEPLSLLLVAKNKG
>NC_011729.1|WP_012599100.1|1906253_1906625_-|response-regulator
MSKRILVVDDEKDIRRVVQISLEKFAGWEAILAQSGQEGLLKAKTQSLDAILLDISMPDLDGFQFFEQLQSDPVTCSIPVILLTAKVLPRDYQGFKDMGVAGIIPKPFNPLTIWQQIAEILRW
>NC_011729.1|WP_012599101.1|1906807_1908601_-|response-regulator
MKILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPILDGLSLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQDIKRFPSILTWGALQFDPILIKVTYQDQVINLSPKEYSILELFLRHPQRIFSRSDIIDRLWMIDESPTEAAVTNLIKDLRRKLTAAGMKEELIETIYKLGYRLKSAPDCQEKKKQEQEGLMLLEQVKQDFKKSLKDRIKGLEKVSIGGNCFSPSQRIQLKQEAHRLAGGLGIFGYSKGSEVAKEIEHLLDDESGQEEENFILFSQLITELKQEIGQSVLTSNLAPLSRGFRPLIVIIDEYNPFTQAIQEAAPDQGINIEIISDEIIPWQWLKQNTPDVIMLSLHRSLTQDSGLMLLQQLKKQFPSIPVLVTTEKDNLYERVAVVRSGGEGYILQTATTEEVFGAITEVLSPVSICNSKVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTFNGLELCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIERSR
>NC_011729.1|WP_012599102.1|1908779_1909562_+|aquaporin-Z
MTLMKRCLAEFIGTFWLVLGGCGSAVLAATFTAKDVTLGLDTSFPLGISFLGVALAFGLTVFTMAYAVGHISGGHFNPAVSFGLWAGKRFSGSDLLPYIVAQVLGGIVAAIIILIIASGNPDFALGGANPLATNGYGAHSPGGYSLLSCLICEIVLTFMFLLIILGVTDRRASVGFAPAAIGLALTLIHLISIPVTNTSVNPARSTGVALFCGNAELIAQLWMFWVAPIIGAILAGWLYLAIFAESRIPASVNPEVERIS
>NC_011729.1|WP_012599103.1|1909852_1912210_-|putative-baseplate-assembly-protein
MEFDFLPKLPKSNLDDRLYQDLVEECLLRIPRYCPEWTNYNPSDPGVTLIELFAWLTDQMLLRFNQVPLRHYIAFLELLGIRLQPPTPASGEVTFYLTTSFTSPYTIPAYTEVATPRTETEEAVVFSTIKPLIIGNPQIRHFLTAITPEIGVQSLNDRLSQYWNRQVTGEWNGPQLLVFEDPPQPGNCYYIVLEPNPSLDGNVIALTFKGEAATATGINPNHPPRRWEAWNGNDWQEVLLSEADDRTDGLSFSHFTQQGGDPFFGADLILHLPLNFPSVQFGNYQGHWLRCCYTPPNDEQTGYLRSPRLMGMNVRSIGGTVPISQEIIIKEENLGTSDAIPGQKFQLLVTPILPRHEGEYLLVTPPEGLPQRWQEVNDFADSGPDDRHYTLDSLTGEIQLGPLIREPSQLKKQTQLRSHHQRGTPLSNTINPLEEQPLERQYGAVPPKGSMISFVSYRTGGGQGGNVQKSTITIVKSAVPYISHLINHQPTYNGADAESLEDVVIRVPRMLRTRDRAVTPEDFEHLAFEAGRGAITRVRCLFPTNKESTYDNDTLSLVGSQALVREIERYQALSPQDEAVKLPITLLHQIKSHLLQQSRNSLKSGQVRLLLVSNADTTAIERREGIHPDRLSLSPSLLEQVKDYLERRRLLGVEILYDQPEYVGVAVQTEVTLEPEYNTPIAAPTILANIEIALYRFLNPITGGIEGTGWPFGRPVYHSDIVKLLQTIPGVRYIGTVQLYKIRRTANGWERNLPVEPLIDPGEFGLICSWHDDFLRSSHVVNWNE
>NC_011729.1|WP_012599104.1|1912295_1912697_-|GPW/gp25-family-protein
MTYSSASYNYIGKGIGFPVGVNIQGNLQTSSEIRNIEESIRIILGTKLGERVYRPNFGCSLNELTFAPMNTTTLLQIRIAVQIALETWEPRIVIDKIDTETDYNQDKVNIIINYHPLDSYDSRSLVYPFYLNT
>NC_011729.1|WP_157867374.1|1912780_1912933_-|hypothetical-protein
MGYFDGYCELDVGFPYVNPTYVLVRSPQRDFFEVNWYHRSYFIINNSQKT
>NC_011729.1|WP_157867556.1|1913168_1914848_-|DUF4157-domain-containing-protein
MQLLRVPQAEQAIQGKGDETKTEEMGREDVTEKGAVIQEKSEEKPNLTGLPDDLKAGVENLSGYSLDDVRVHYNSPKLAQLQALAYTHGTEIHVASGQEEHLPHEAWHVVQQMQGSVKPTMQMKGVQINDDQGLEKEADVMGKRALMIPQNSKLSLRQNPKQPNGEAPVQGMFEEIYELAAQYSLLIGVALAVATIYGIAKTVNLIKNCIHKGRDVNKALTAVLKEDKSIESDKEAIEGSKDSSDELGEIDSDQGMVGDCLYTAVSLARGNPVGEIELALRQIATDWLINVQDDHEIFQYAARQDLINVVSKPQEWNDDAGDISAVVLAYSQQITLHVVTNTNVYVFNPGNIVVTIYYHSNHYTCQPVEGVHTGKEKEIISSPKKSVSKGKKADKIVVTYSEFTDIIKNKNLFIGKKFKNVIEELEKKYDFSDITEYSKRLQANWSKYNQTTDVYQAEETEEIVGNDSGDASSKPKRRQYNIKDLTNKGLNKAQLNDIRKCIEEYNERGAGKNLHTGVGTIPTMDLTDPSWGGKGRGDARLQFHPDGSLTAVNHKGKSL
>NC_011729.1|WP_012599106.1|1915353_1915857_-|phage-tail-protein
MVNFPEILTVSRFYVELKLDGSDDRVDAVFMECQGLEVTTNVISITEVTAQKWGKNGQNRGRLVQTKIPSNYRYIDLVLKRGLTTSTVMWDWLASIQGGNWDQQRRDGSLTLYNQAGNEQFRFQFYRAWPTRYHINDLNVQGSAYEIETIELAIEELKRTQINSSVS

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Crispr_ID: NC_011729_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_12

2344682-2344863

Orphan

V-U5

Consensus_repeat	Method
GTTTCAACAGCCCTCCCGATGTGGGATGGGTTGAAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_011729_12

>merge|NC_011729|12|2344682-2344863|CRISPRCasFinder
GTTTCAACAGCCCTCCCGATGTGGGATGGGTTGAAAGTTCAGTTCGATTTGTCCACTCCTCACGGAAAATTAAGTTTCAACAGCCCTCCCGATGTGGGATGGGTTGAAAGAATAGCTTATCATCTCTATCTAACAGACAATAAGTGTTGCAATAGCTTTCCCAATGTGGAATAGTTTGAAAA

>NC_011729|12|11|2344682-2344863|CRISPRCasFinder
GTTTCAACAGCCCTCCCGATGTGGGATGGGTTGAAAG	TTCAGTTCGATTTGTCCACTCCTCACGGAAAATTAA
GTTTCAACAGCCCTCCCGATGTGGGATGGGTTGAAAG	AATAGCTTATCATCTCTATCTAACAGACAATAAGT
GTTGCAATAGCTTTCCCAATGTGGAATAGTTTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954127.1\|2352502_2353063_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_011729.1\|WP_041237705.1\|2354086_2354959_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NC_011729.1\|WP_015954117.1\|2336282_2337803_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|275228
NC_011729.1\|WP_015954124.1\|2348616_2349804_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NC_011729.1\|WP_015954119.1\|2339959_2341213_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341196
NC_011729.1\|WP_015954122.1\|2345429_2347685_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_011729.1\|WP_015954123.1\|2348021_2348483_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NC_011729.1\|WP_015954113.1\|2331454_2332342_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954111.1\|2329839_2330838_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|376775
NC_011729.1\|WP_015954115.1\|2333269_2334937_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_011729.1\|WP_015954126.1\|2351163_2352450_-\|ABC-exporter-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|213754
NC_011729.1\|WP_015954130.1\|2355185_2355794_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041238148.1\|2330863_2331283_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NC_011729.1\|WP_015954116.1\|2335047_2336280_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954131.1\|2355938_2356232_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954125.1\|2349974_2351141_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NC_011729.1\|WP_015954120.1\|2341187_2342717_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NC_011729.1\|WP_015954128.1\|2353305_2354049_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954118.1\|2337820_2339956_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NC_011729.1\|WP_015954114.1\|2332361_2332868_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954127.1\|2352502_2353063_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.75638e-17
NC_011729.1\|WP_015954117.1\|2336282_2337803_-\|AAA-family-ATPase	gnl\|CDD\|275228	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase. Members of this family are AAA family ATPases by homology. They occur regularly in a conserved gene neighborhood with the restriction (R), modification (M), and specificity (S) proteins of an apparent type I restriction enzyme system, plus one additional uncharacterized protein. It is not clear whether members of this family contribute to restriction per se, or to another process such as transfer of mobile elements.	5.61144e-18
NC_011729.1\|WP_015954118.1\|2337820_2339956_-\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	1.13689e-24
NC_011729.1\|WP_015954119.1\|2339959_2341213_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341196	cd17515, RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to MjaXIP/S.MjaORF132P TRD1-CR1, S.Sau1132ORF3780P TRD1-CR1, S.Mca353ORF290P TRD1-CR1, and other TRD-CR's. The Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) recognizes 5'... CAAGNNNNNRTC ... 3', and Moraxella catarrhalis S subunit (S.Mca353ORF290P) recognizes 5'... CAAGNNNNNNTGT ... 3'. The recognition sequence of Methanococcus jannaschii S subunit (MjaXIP/S.MjaORF132P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.Sau1132ORF3780P-TRD1 recognizes CAAG/CTTG, and S.Sau1132ORF3780P-TRD2 recognizes GAY/RTC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	3.62186e-91
NC_011729.1\|WP_015954122.1\|2345429_2347685_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.66741e-51
NC_011729.1\|WP_015954123.1\|2348021_2348483_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	3.96825e-76
NC_011729.1\|WP_015954115.1\|2333269_2334937_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.25724e-14
NC_011729.1\|WP_015954111.1\|2329839_2330838_+\|STAS-domain-containing-protein	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	3.10411e-92
NC_011729.1\|WP_015954126.1\|2351163_2352450_-\|ABC-exporter-membrane-fusion-protein	gnl\|CDD\|213754	TIGR02971, devB-like_secretion_protein, ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.	4.70494e-90
NC_011729.1\|WP_041238148.1\|2330863_2331283_+\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	2.53532e-34
NC_011729.1\|WP_015954125.1\|2349974_2351141_-\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	1.0466e-156
NC_011729.1\|WP_015954120.1\|2341187_2342717_-\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	2.1498e-62
NC_011729.1\|WP_015954124.1\|2348616_2349804_+\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NC_011729.1\|WP_041237705.1\|2354086_2354959_-\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	6.13057e-105

>NC_011729.1|WP_015954120.1|2341187_2342717_-|N-6-DNA-methylase
MSKEQLTNDIWRACDILRRDNNCGGIMEYIEHLAWLLFLKFLDEQEDTFALEAELRNEKYHYMIEGEYRWSNWVTKGLGKKKKQSDKRNTPEWDADTLMGFVKEKLIPYLASLSGSPEREVIAGIFGGRTVILCDSVYNLKDVLEIVDRIDFSNSDDIYTVSHTYENLLQRLGSENKMAGEFYTPRPVIRFMVEVIDPKIGETVYDPACGTCGFLVAAYEYMKQWEQTIRDRDILQRHTFFGQEKKPLPALLGTMNMVLHGVLVPDIQRKNTLEEDTRTAIKKYDIILTNPPFGGKENKQIQKNFPVSANATELLFLEHIIKKLKTDDNARCGMVVPEGTLFRSGAFGTVKEWLLNDFNLVMVVSLPPGTFAPYSDVKAALLFFERGKQGDEVLYQEVVLPEELKKFSKGNPIDDIHFRQVREIWQQMKAYQQGKGKKPEITEFSWFEKTEDLIKRGFDLAAKNPTTTEREKLPEPSVLLDRIIKNNEKLHQNLLSLKQKLDEGVKWDG
>NC_011729.1|WP_015954119.1|2339959_2341213_-|restriction-endonuclease-subunit-S
MRGLSGMVDNLWPLPDGWEWKKISDIATTTSGGTPSRKNSEYFTGHINWFKSGELGDSEIFNSEEKITEEAIKKSSAKIFPKDTLLIAMYGATVGKLGILGIDAATNQAVCAIFPKKNLGIKIVEEKFLFYFFKFIRSQLIERSFGGAQPNISQTIINNVTIPIPYPNNPKLSLDIQQRIVARIESLLGEIKHNRSLLEQMRQDTEQLLDSAIKECFALSRMETWKNHSCLGEIAKIIAKQVDPTLPQYQTLPHIGVDVIQANTCQLEDYRTIEEDGVTSGKYLFTSGSILYSKIRPYLRKSVLVDFEGLCSADIYPLSVISDEIEPKFLMWFLISPLFTDYAKSHSGRARIPKINRDALFSFKLVYPNYEEQISIISYLDLIRFEVQKIDKLLKEDEKNFNYLEQAILEKAFRGEL
>NC_011729.1|WP_015954118.1|2337820_2339956_-|N-6-DNA-methylase
MATITENLNKIWSEFRKVGITDDLVVIEYLARLLLEKVLDISIDTMVLIGRTPTNNKVMGFLTDHPPQKILPSEPSSIDIPHIDTTNIVSMSTLPRHPQDIPNLNLQSIQENLDNAINQAENIPNLYNHHILFRLSTRQSGGRYPTPRHITKFIYNLAQVKPDHSLADFACGSGGFLVERELTVDNYHKTWGIDISPEWIRLAYTNIALRKLPPLLRSGNALDVETFNKLKFKQKEYTIFDRILMNPPFGEKIDTKLAVGKLGKTVGSRSETALTTLAIQQLAEDGIAAILVPSGLLFSNSKAEKELRQTLIDEYHLKAVLTLPKDALQPYSSLQSHILLIHKIPPLLRGVRGDSPLTGEKMTWFFQLEKDGYSSGRSRDLTQKPNESDSNFPFVESVFNRQKDEFDYSFLDSHPKLGIKIFKNNENQLLGVVIQGLETTEINSITFYPQVKIQQDKQDKIIPPFLLVDTIPIENQKLCIRIPLDENQPDIVKNPLQLIQDLFKPKKNDPDPGYRLYSTAVKEIAIAIYPDTIITKESIRVLGVLIPSKQIIDKNYDLRPEEYINKQTETLLSNSPVELLTRIYTNQRQLTQNLETLFSRIELPPISTQKLPSPIAETFIPFGQLNPQQQDIWDKIQSQTQPYTNDEGENYKIALHFIPQDIEIEDNGEISDTTQRTLELLDAMGVIIPVTIDNKLYYRRVTQRDLWTNSD
>NC_011729.1|WP_015954117.1|2336282_2337803_-|AAA-family-ATPase
MKLKRFFIEYRVLQDLEIYFGPSLKESKAFTDSPAYNLDFLVGVNGTGKSTVLRILFELLRLLERQAAINFPFELEYELEKVGLFKTIFISNRYQDLEKETIEYKQTPEVWEIDNNGNYNLIQLSSDILPDLVIAFTTGSESNWSTIDETNLDYITSPLPSLSPLDLAIGELPGKPLTPIDEEDDTSTTESKCIFISSSEIPLITLCGLLTDLVKPDKPLSKVREASKIKKLSGFSLKFRKPNSKTQDWEKVEELAKLTPKCLRIGTDYQLIFDLSDANLPHRLIETYYSGFELFKTLSQLAKPDKNGQTVLQSVNLFLERPMSDHPETDLDIPLLHLLDWLSDGEKSFLGRMCLLTLLETDEALILLDEPEVHFNDFWKRQIVYLLDTTLKKRHSHILISTHSSITLTDVPKENIMVLDRNGNYTNKSLKPSMNTFAADPSDIMVHVFGSPYPSGELSINRVEDELANKLKRSTEERKEALENLKDVVASGYWSFLIRQELQSLK
>NC_011729.1|WP_015954116.1|2335047_2336280_-|hypothetical-protein
MLYRIELPEITRKRLTDVVYLQMTLLRYASYRSTSELSRGSCEKYFEKHKRFRGRHKEIAEWIFRGSKKRELLETFAMGNKSEKLAWSRSLHHDVVKLLNNPYGSLTPYIEDKTTPEWKKAGVLFLINFYEQYLDSLPNLFFGIPQVNQIKKTTIENEFETLNKKLKVCPTCDFAIGRDEIDHYFPKSIYPHLSCHPFNLMPICSPCNDKQVKGNTDLLRQSTEIFRSLEQILLPYRTDGLTQHIYLNFDLSNNYKKPEKIDCFSQKKSRYNFNYLETHANTYKLSQRWLKMSSIMEHSIFRTIEKIIEKPENKPHLNIFDIQEILDQYLSQLMDEQGQTGFAFPMTWWLATLINQQIEPVINSNQKIDIQDYPFLAEIASWLKQDTIQHPQFMSNEMIDKARELRKKAR
>NC_011729.1|WP_015954115.1|2333269_2334937_+|DDE-type-integrase/transposase/recombinase
MSSPPSTSNDSPQPQRLPSDEMITDEVKVKMDIIQSLIEPCDRVTYRQRKEQAAKQLGVTIRSVERLLKKYREQGLIALAKTRSDRGKTRIDDDWKEFILNTYKEGNKGSKRITRHQVFLKVKGRAKQLGLKKEEFPSHQTVYRLLDKYIEEHERKKKARSPGYSGSALTHMTRDGRELEVEGSNDVWQCDHTRLDVRLIDEFGVLTRPWLTIIIDSYSRCVMGFFLGFYAPSSHVDALALRHAILPKSYNSEYQLKNEWNTYGIPTYFYTDGGKDFRSIHVTEQVAIELGFNCFLRRRPSDGGIVERFFKTLNDNVLRELPGYTGSNVQERPETVDKDACLTLKDLERILVNYIVDEYNQKPDARMKNQSRIERWESGLPTEPYLYDERELDIALMKEAKRTLQKSGTLQFENLTYRSQLLKGREGERVAIRFDPDDITTILVYEYLNDGTEAFLDYAHALGLETEKLSYRELKAINKQLNEQEEAINNDKVLDAMMERMALVEEIVKKNRQQRQQNAHEEVNPRRSLSEKLSIPEPENEDGDDDLDDESIEVY
>NC_011729.1|WP_015954114.1|2332361_2332868_-|hypothetical-protein
MMTHLRRILTVFVLATLLLVTACSPEPPSRFEQAQQESTQRGASAVVKESTSGGSFNKFFPQAGGGYERVYTQEKKGFAEAKLKQDGKEVAVMAISDTLNNPSATQKFEQSSEKIAGYPAVQQGSQATAILVNDRYQVKVLSRDPSFTADDRQTWLEKFDLNGLAQLK
>NC_011729.1|WP_015954113.1|2331454_2332342_-|hypothetical-protein
MSKPIFELVDELPKDNITTKVLHSLDFIIPGEWENIVGFENTIRKVTGETDQEMIQQIGDRAVWLFNDKSQGYQTALWLYQTVDRTDVALASAALANKVSGKIPLLGFVNRLTPKADKAQALDLGIKLVVELVAFCQINGIPGDSIGDFVASLGEYEGESLMRMAALVCIDGLIPLGPDFILKIQSTLANLSPKELESEPTFNQIKQTIPGQGAGGKLDFINQSFDSVKGWMGNFVNQHDLTPEKVFSHLQSFVEFSDSKLDYVAAFLDMTTNYYEHTGTQTLAKRLIERAVAEI
>NC_011729.1|WP_041238148.1|2330863_2331283_+|ATP-binding-protein
MRHQFRLRVRTELEQLIPVLKWFENHTQSLLPETIIWQVKVALAEGFTNTVRYAHQHLPHETPIELALAIFSNYLELKIWDYGNPFDLHKKLQELKESDEDPLLKEGDRGLIFMQSLMDELDYIRLSNEQNCLIMKKKI
>NC_011729.1|WP_015954111.1|2329839_2330838_+|STAS-domain-containing-protein
MATQLPPKDFPIVFNHDSPIILIPNRLTVLEAVDFKNTCHDLLVQTSPSSRIILDFSQTQFIDSSGIGALVHNLKATQQQKIELVLYNVQPPIMGVLSLTGLDQILLLERPTASDVPQISSPDDKSLPETHPSVKSSLKRVIDILGSLVGLAITGLLFIPIMLAIKRDSSGPIFFTQTRCGWLGKQFKIIKFRSMCVEAETLKDKIPNQASGAIFKNENDPRVTKVGRFLRRTSLDELPQFWNVLRGEMSLVGTRPPTPDEVDRYDIPQWRRLNIKPGMTGEWQVNGRSQVRNFEDIIELDLRYQKNWSLYYDMELIFKTILILFNKNSGAY
>NC_011729.1|WP_015954122.1|2345429_2347685_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MHKVTPISPSLGDSQETQVSLSAPTSVDTVVTREGYNRVRCSAAMIGLAISMSATSLFLPNQSRPALATGSVSSQATLTNLATDDTQTPAPATPTKLTPPALKHQVKAGETLWTLSSNYKINPEAIATSNNLSLQDNLVAGQTLKIPSEDLTQNKSKEATPTKPKATSEESLESSLDNLRETRKRLQESLVALRSEEATGESKTKVIITDVSDLKEEPQTRFSAQTRPRIVGLSPDSSDEQGIEIPVEMPSVEIDSQTSVAPQIIENNQLNTSTAASPSTITPEENGRFSRNNLSRRQLDPIPLATPDPENLANSLENNSQSLHRLKIETNNSDSSFSSSNNTLDSTIANKNSENTDLAEPQPIELQVEPPKTATVVPPLQISQPKAEQPASEKIYRVQTGDTLNNIARKHGITVAQLIKANNITNPNLIKINQPLVIPTKGTASRTQPRTTVISGVPITAQRNSSQLPPVPLPVGTQANTSTLVSRLPNNTEGVSDIPSMNATVETGTQANTDQLRADVAKLQQQYDNTQPIPIEVEPPDGSFSAPIAQQPRNSEWDKDRRLRNTNTQSTVSQPTQEQIIGTASVNIEEYNNSLRIPVGETVSPELPGLSSPDQYLPDAPARFNGYIWPTKGVLTSGYGWRWGRMHKGVDIAGPVGTPIVAAAPGEVISAGWNSGGYGNLVKVRHTDGSVTLYAHNSRILVRRGQQVEQGQLIAEMGSTGYSTGPHLHFEIHPDGSKAVNPMAFLPKDRS
>NC_011729.1|WP_015954123.1|2348021_2348483_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MIRLVLVHPQIPPNTGNIARTCAATATELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYHPNLEIFEQVHQKIGGRKIGFSVSGQENFLKFQFEVGDWLLFGSETDGLPANVLASCDATVYIPMAQPKVRSLNLSVSVAVGLFEAKRQLGYLN
>NC_011729.1|WP_015954124.1|2348616_2349804_+|amidohydrolase
MLSEIKDLAQTLAPRLVEIRRHIHAHPELSGQEYQTAAYVAGVLSSCGIHVREAVGKTGVVGDLTGKGTDSRTLAIRTDMDALPIQERTNLEFASCKPGIMHACGHDVHTTLGLGTAMILSQLSEPMPGNVRFLFQPAEEIAQGASWMVQDGAMVDVNGIFGVHVFPSIPARSVGIRYGALTAAADDLEIYIQGESGHGARPHEAKDAIWIASQVITTLQQAISRTQNPLRPIVLTIGQISGGIAPNVIADQVRMAGTVRSLHPDTHAQLPEWIENVVANVCQTYGAKYEINYRRGVPSVQNDYILTQILESAAREAWGNESVQILQEPSLGAEDFSLYLQHAPGTMFRLGVGYPDKLNHPLHHPEFEIDESAIVTGVVTLAYATYKYWTTDNNG
>NC_011729.1|WP_015954125.1|2349974_2351141_-|FtsX-like-permease-family-protein
MFLNLFQKTPLAWHQLTKQKARLAVAIAGIAFADLLMFVQLAFQNALYDSAIKPLRSLKADLVLISPQFQSLFSVKSFSRERLYQVLAYDGVKSVNSVYIGMGQWRNPETRIERPILVWGVDPAEPSFNLPEVNQNLDHLKILNQMLFDLASRPEYGNIADAFTTTGTFKTEVNGKGIRINGVFNLGASFAADGNVITSDSTFLSLFNERQPDEIEVGLIHLEPGVNVAQIQAQLKAGLPQDVRVLTVEEFAQVEKSYWESGTPIGFIFGIGVVMGFIVGIVIVYQILYTDVSDHLPEYATLKAMGYSDRYLLIMLMQEAFLLAVFGYLPGFILSVGLYHLTYVATMLPISMTVSRAINVFILTLIMCFLSGAIAIRKLQSADPADIF
>NC_011729.1|WP_015954126.1|2351163_2352450_-|ABC-exporter-membrane-fusion-protein
MTFQFMTKPPQRGLIGLIIVATSLTGISVIYGISRLQPASESQPVAVQNAPTVTKVAALGRLEPEAEVVSIAAPLALDGDRVAQLLVKEGDRVEAGQIIAILDSRAPLADAVAQAKEQVKMAQAKLAQVQAGAKTGEIEAQQAELARIKAEQNTEIEAQKANIARLEAEKSTEIEAQKAIINQMEAQFANAKIEYERHETLFLDGAISASLRDSKKLTFLTAQQQLNEAQATLKRIESSRKQQLIEAQATLKQIETSRPQEILQAKATLNQIAEVRPVDIQVAQTEVESAKVALKQAQTNLEQAYIRAPMPGKILKIHTRPGAKIGDSGIVDLAQTDQMIAIAEIYQTDINKVKLGQRAIITSQAFPGELEGNVSLIGLQVSRQNIFSNEPGENLDRRVVEVKIRLNPEASKQVEKFTNLQVQVAIDL
>NC_011729.1|WP_015954127.1|2352502_2353063_-|TetR/AcrR-family-transcriptional-regulator
MPKIVDHNLYRQELLSKCFDLFASKGYGSVTMREIAQGIGVSTGTLYHYFSGKEAIFLQLVEEQTKQDISNFLATADRNQPLSGRIETLFNFIAKNEDYFQQQILIWVDFCRHQDNQEVLNNEKLKQADEEIRQVLTDYLQVDELIIELIFSLIYGILMARLFEGKTISYTNQGNLLAKMLTVYLQ
>NC_011729.1|WP_015954128.1|2353305_2354049_-|hypothetical-protein
MIITPENLSPDLNTISTEDLKKTLINLTQDRDQHRLNQKVKFYQEQLAPLFEELSRRNPYPQAEDQKGLIGGIWSPIWSTIPFQDIIPGRLREQSYQIFLDNGYYGNIARYAPLNQLPLLDKLSQPLGVYDLLLIQKYEIQDNQWLIENVGFKQRFKLGVTPLSQEKAKTWLKEKVQSQSDLNSSETEILNLPFLKSINQKISKQLKGAFKAKPQFEHLYIDTDFRLVKTRREAKQRPSYTITVKVG
>NC_011729.1|WP_041237705.1|2354086_2354959_-|aldo/keto-reductase
METKKLGKTETSISAIGLGGMPMSLKGRPPRSQSIKVIHKALDLGVTLIDTADSYCQDESDKHHNERLIAEALQNYKGDTTHVIVATKGGLMRPNGNWTRNGNPDHLRSTIRVSHEALGGEKPIAVWQYHSPDPDYTIKEALTPVKEAVEAGLIRYVGVSNFSVDQIKQAQELIDIVSVQNQFNPWHRQPEFDGVLEYCEQQGLTFFPWSPLGGSRRVSNLKDIPIIAKLAKEKGVSVYQIVLAWLRSKSPCVVPIPGASKTSSIESSVKSLEVNLSAEDVHRLENQLTT
>NC_011729.1|WP_015954130.1|2355185_2355794_+|hypothetical-protein
MNTKTTLLSIITILSTLGISSLTQAQTVNSRCDIYPRGEDRASNVVNCTFSQRQGFIRIQREDGISYELKPDGTNKYLDQNGVSVVRENEGPATIFRFSDESVYVYQNERAPASTTKKGETPENLYSTVPPALKDLVGARAGQAEGELQRRGYTYRNTQTFEGGKSAYYIENKSGYCVEVGTVDGRYSSIVYNSSDRCNPSN
>NC_011729.1|WP_015954131.1|2355938_2356232_-|hypothetical-protein
MRVYFKDEILCIHAEDLPSYKKGGSVVRNSYFWALKSISCYARRGVDWEFDPPVWVALSRMLLSFAESGYLGDSETILEFPIDTQIPDVLRSVSTWL

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Crispr_ID: NC_011729_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_13

2385683-2385781

TypeV-U4

Consensus_repeat	Method
CTACTATAAAAATGTCCCACTGTT	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_011729_13

>merge|NC_011729|13|2385683-2385781|CRISPRCasFinder
CTACTATAAAAATGTCCCACTGTTCACTGTTCACTGTTCACTAAAGAAGGTGCGTTACCCTGCGCGCTTCACACTCTACTATAAAAATATCCCACTGTT

>NC_011729|13|12|2385683-2385781|CRISPRCasFinder
CTACTATAAAAATGTCCCACTGTT	CACTGTTCACTGTTCACTAAAGAAGGTGCGTTACCCTGCGCGCTTCACACT
CTACTATAAAAATATCCCACTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954171.1\|2389829_2390180_-\|DOPA-4,5-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|378079
NC_011729.1\|WP_015954155.1\|2374433_2375639_-\|cysteine-desulfurase-NifS	unknown	unknown	gnl\|CDD\|132443
NC_011729.1\|WP_015954172.1\|2390296_2391199_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NC_011729.1\|WP_041238153.1\|2379726_2379948_+\|DUF2949-domain-containing-protein	unknown	unknown	gnl\|CDD\|371402
NC_011729.1\|WP_015954166.1\|2385126_2385492_+\|nitrogen-fixation-protein	unknown	unknown	gnl\|CDD\|238315
NC_011729.1\|WP_015954167.1\|2385846_2386701_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NC_011729.1\|WP_015954170.1\|2389480_2389744_-\|DUF2283-domain-containing-protein	unknown	unknown	gnl\|CDD\|378367
NC_011729.1\|WP_049858474.1\|2387124_2387979_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NC_011729.1\|WP_015954163.1\|2381738_2382365_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341393
NC_011729.1\|WP_015954160.1\|2380067_2381216_+\|homocitrate-synthase	unknown	unknown	gnl\|CDD\|183341
NC_011729.1\|WP_015954175.1\|2395419_2396586_-\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|180947
NC_011729.1\|WP_015954156.1\|2375716_2376103_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|235941
NC_011729.1\|WP_015954162.1\|2381485_2381686_+\|putative-nitrogen-fixation-protein-NifT	unknown	unknown	gnl\|CDD\|377752
NC_011729.1\|WP_015954169.1\|2388099_2388942_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NC_011729.1\|WP_015954165.1\|2383228_2384830_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_011729.1\|WP_015954174.1\|2393854_2394946_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_011729.1\|WP_015954176.1\|2396676_2397003_-\|thioredoxin	unknown	unknown	gnl\|CDD\|365862
NC_011729.1\|WP_015954177.1\|2397124_2397904_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NC_011729.1\|WP_015954161.1\|2381188_2381455_+\|nitrogen-fixation-protein-NifZ	unknown	unknown	gnl\|CDD\|377301
NC_011729.1\|WP_015954157.1\|2376156_2377608_-\|nitrogenase-cofactor-biosynthesis-protein-NifB	unknown	unknown	gnl\|CDD\|273539

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954171.1\|2389829_2390180_-\|DOPA-4,5-dioxygenase-family-protein	gnl\|CDD\|378079	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family. This family of proteins are related to a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.	7.64542e-52
NC_011729.1\|WP_015954155.1\|2374433_2375639_-\|cysteine-desulfurase-NifS	gnl\|CDD\|132443	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.	0
NC_011729.1\|WP_015954172.1\|2390296_2391199_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	6.794e-127
NC_011729.1\|WP_041238153.1\|2379726_2379948_+\|DUF2949-domain-containing-protein	gnl\|CDD\|371402	pfam11165, DUF2949, Protein of unknown function (DUF2949). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	1.02234e-15
NC_011729.1\|WP_015954166.1\|2385126_2385492_+\|nitrogen-fixation-protein	gnl\|CDD\|238315	cd00562, NifX_NifB, This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).	1.02787e-07
NC_011729.1\|WP_015954167.1\|2385846_2386701_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	5.5346e-06
NC_011729.1\|WP_015954170.1\|2389480_2389744_-\|DUF2283-domain-containing-protein	gnl\|CDD\|378367	pfam10049, DUF2283, Protein of unknown function (DUF2283). Members of this family of hypothetical bacterial proteins have no known function.	1.06589e-11
NC_011729.1\|WP_049858474.1\|2387124_2387979_-\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	3.08616e-05
NC_011729.1\|WP_015954163.1\|2381738_2382365_+\|CBS-domain-containing-protein	gnl\|CDD\|341393	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	9.32245e-53
NC_011729.1\|WP_015954160.1\|2380067_2381216_+\|homocitrate-synthase	gnl\|CDD\|183341	PRK11858, aksA, trans-homoaconitate synthase; Reviewed.	0
NC_011729.1\|WP_015954175.1\|2395419_2396586_-\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|180947	PRK07366, PRK07366, LL-diaminopimelate aminotransferase.	0
NC_011729.1\|WP_015954156.1\|2375716_2376103_-\|4Fe-4S-binding-protein	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	8.18114e-09
NC_011729.1\|WP_015954162.1\|2381485_2381686_+\|putative-nitrogen-fixation-protein-NifT	gnl\|CDD\|377752	pfam06988, NifT, NifT/FixU protein. This family consists of several NifT/FixU bacterial proteins. NifT/FixU is a very small, conserved protein that is found in nif clusters; however, its function is unknown. Although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in K. pneumoniae has only a limited effect on nitrogen fixation.	8.25318e-29
NC_011729.1\|WP_015954169.1\|2388099_2388942_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	0.00219397
NC_011729.1\|WP_015954165.1\|2383228_2384830_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.90012e-09
NC_011729.1\|WP_015954174.1\|2393854_2394946_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.06553e-44
NC_011729.1\|WP_015954176.1\|2396676_2397003_-\|thioredoxin	gnl\|CDD\|365862	pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.	4.2762e-33
NC_011729.1\|WP_015954177.1\|2397124_2397904_-\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	1.67899e-53
NC_011729.1\|WP_015954161.1\|2381188_2381455_+\|nitrogen-fixation-protein-NifZ	gnl\|CDD\|377301	pfam04319, NifZ, NifZ domain. This short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins.	1.22153e-36
NC_011729.1\|WP_015954157.1\|2376156_2377608_-\|nitrogenase-cofactor-biosynthesis-protein-NifB	gnl\|CDD\|273539	TIGR01290, FeMo_cofactor_biosynthesis_protein_NifB, nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. NifB belongs to the radical SAM family, and the FeMo cluster biosynthesis process requires S-adenosylmethionine. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	0

>NC_011729.1|WP_015954166.1|2385126_2385492_+|nitrogen-fixation-protein
MKIAIVSQDFQSIGGKTGRARNFLVYEASQETAPILLEKLEVPETEPTFHDLHLDDVTPHPLDQTVLITREAGEGLKERLSRRGITLYITSETDPLAAINGVLQGTLPTLDPTPHKDDGSC
>NC_011729.1|WP_015954165.1|2383228_2384830_+|helix-turn-helix-domain-containing-protein
MPYTIPDNCYSCGTCKPQCPTGAIHLDDGKYWIESGLCNDCNEYAGEPQCVVHCPISSPVPVQAKKGRYKALERVATNPDLFFNGKNNTFASSMVIWEACKLLTSTTILPWKTAVDGALSYQRPVKQGRGNLSFRLVENFDSDSLAQGNYVTSSNELETIDIRSACLHLIYAAYATTLEKPWEQEFVIDDQQLEKYLGLDKRKDLSKATKLTLLKTLAQQPCRITAAIDWPQQGKIKGFSVEEDFIWHLLEIKHHFQEDSNGCKHLIGLTFKIRAGLWAKYFLNKQGYKQRTVFYQYGILPKFLLNTVMSIWQQHQGAVRMILWLLFKAKMGRKQSIMVPTLMNIAYGKDKVTQAATQREQRKRLIQKFESNLEVLNSYELKPVFDPVTYFSEIQPLWARLVELPDDADDAIDFWINDGSQEQRLTDPAPRGKWNLLMQARILEFELPQEWDQQLAKFERKKQQRINKNPKSKISHRLSAEQILTARKRQGISQRELAQLIGKSQSWIRDLERGRFTAKPEDQLRLQKILNLS
>NC_011729.1|WP_015954163.1|2381738_2382365_+|CBS-domain-containing-protein
MLKASDIMTQDVATIKGSATVAEAVKLMKWKNLRALIVDVRSSQDAYGIVTHTDVITKVVAYGKDAEKIRVYEIMTKPCIVVNPDLGVEYVARLFANTGIRIAPVIQGSLLGIISESDILYKGDFLENPKLPLLQREVTRTIEEARSLAASYGPTSKECLEAWAIADELQAEAIYQEGVNPPEKTAFQLFCDEYPEVLQIHHKELMAV
>NC_011729.1|WP_015954162.1|2381485_2381686_+|putative-nitrogen-fixation-protein-NifT
MKVILSRRSDGNLSVYVPKKDLEEIVVNNTNGPDGTVLTLANGWELAFSSLADDIQLPQTLEAKKL
>NC_011729.1|WP_015954161.1|2381188_2381455_+|nitrogen-fixation-protein-NifZ
MGLYNPGEIEINDPPVYEIEQKVRIRKVLRNDGTFPGKEIGQVLAKKGDIGYVVSIGTYLQSYYIYAVHILERGVVVGCRYKEIETVE
>NC_011729.1|WP_015954160.1|2380067_2381216_+|homocitrate-synthase
MRTIQINDTTLRDGEQSAGIAFTAPEKVALAILLDEIGIQELEVGTPAMGGAEAQAITEMTHLGLKSSLLSWNRAVRSDISASIACGIKRVHISIPVSDIQISAKFQGNCRLVLERLRDSINFALDKGLYVSIGGEDSSRADESFLLDVALCAQDWGASRFRFCDTVGILDPATTSEKVSKLVKALSIDVEMHTHNDFGLATANALAGLQAGATSVNTTVNGLGERAGNAALEEVVMALKRLYTIDLKINTRRLRELSQFVVKASGYPVPPWKAIVGKNVFAHESGIHVHGILQNPSTYEPFTPEEVGWERQLVIGKHSGRHTLLSLFQQHGIHLTREETQSILERVRHLSVQVKRGLTVEELLNLVSIKENSSWDCITPAK
>NC_011729.1|WP_041238153.1|2379726_2379948_+|DUF2949-domain-containing-protein
MESNLILNQFYEFLQEDLFLSTDELAVVRNQQHSVTSVTNLPMLLWQYGLVSLEQLQRVLDWLDHQTLLNVIS
>NC_011729.1|WP_015954157.1|2376156_2377608_-|nitrogenase-cofactor-biosynthesis-protein-NifB
MLKTTSTSKTNPNKTSSYKADSGCGCGTSTQTIRDEKILERIEKHPCYSEEAHHHYARMHVAVAPACNIQCNYCNRKYDCANESRPGVVSEVLTPEEAAHKVLVIAGKIPQMSVLGIAGPGDPLANPNQTFRTFELVADKAPDIKLCLSTNGLMLSDHIDRIKELNVDHVTITINMIDPEIGTKIYPWVRYNRKRYTGLEGVKILHERQMEGLDALREADILCKVNSVMIPGINDHHLQEVNEVIRSKGAFIHNIMPLISAPEHGTHFGLTGQRGPTPKELKAVQDSCSGNMKMMRHCRQCRADAVGLLGEDRSQEFTKDKFLEMAPEYDLAVRQEVHAGIEKFRAETKTVKAIRKALKSEKESPKILVAVTTKGGGLVNQHFGHAKEFQVYEVDGTEVKFIGHRKIDNYCQSGYGEEATLENIIKSISDCKGILASKIGPCPQEQLRSAGIEPFEAFDTIDAAALDFYQLYLTKHSLVEAES
>NC_011729.1|WP_015954156.1|2375716_2376103_-|4Fe-4S-binding-protein
MSYTITHQCIGCDRCLVQCPTGAIEKVNDVLVIDSTLCNDCLGYYGTAQCASICPTNGGCVKSDSLREELNPIEASTTGNLPNYWDSWFIRYNYLVNRLKTNQRTQYWQDWFDTYSSKLTSLLSQPMI
>NC_011729.1|WP_015954155.1|2374433_2375639_-|cysteine-desulfurase-NifS
MRDCIYLDNNATTKVDEEVLEAMLPYLTQYYGNPSSMHTFGGQVAKAVKTAREQVASLLGALDSEIVWTSCGTEGDNAAIRAALAAQPNKRHIITTAVEHPAVLNLCKLLEKQGYSVTYLSVNGEGLVDLAELEASITGNTALVSVMYANNETGVLFPIERIGSLAKERGALFHVDAVQAVGKISLDMKTSTIDLLTLSGHKIHAPKGIGALYVRKGTLFRPFMIGGHQERGRRAGTENVPGIVALGKAAALAESHLGNVGREQQLRDYLEQTILAIIPDTVVNGHPLQRLPNTSNIGFKYIEGEAILLSLDKHGICASSGSACTSGSLEPSHVLRSMGLPYSVLHGSIRFSLSRYTTQGEIDRVLEVLPTIIDRLRALSPFSSDNAQWLLEQEKALLVNS
>NC_011729.1|WP_015954167.1|2385846_2386701_-|EamA-family-transporter
MGNFILLTFLVLTQVMGDILLGLAMNKFKTGNLFDLSGFWSLITYLVTSPWIWLGVITLVISLLLYYVAVSRLDLSFVLPILASNYILNALLAWLILDEKVSPLRWIATLVITVGVFIVTINKTRQTRQKFSSAVKNKFKSWVNFGLFALLPFSFSLSPTWSFILIIAVADGFGDLFNAKGMKQIGEVQFESFSHLLEVGKQVITNHWILLGITGQTIAFFSFVSALSLADISFVRPATALTYAISLVGAHFMLKEKIGWGRLVGIIVVGIGIILIDLDKGSSV
>NC_011729.1|WP_049858474.1|2387124_2387979_-|EamA-family-transporter
MNNIILLISLVLTQVLGDIWLSRGMKEFGGANLFDPSGFVALIAHLFTNPWIWLGVATLVVSLLLYYVAVSRLDLSFVMPIHASSYVFNALLAWLILAEQVTFIRWMAALTITVGVFIVSISENPPTSKPITSALEHRTKSWFKRSMFFLLPLSFSLPKIWLFAVIIAFADGFGDIFNAKGMKQIGAVKLGSLPEMLQIGQKIITNHWIIQGITCQTLSFLSFVSALSWADISFVRPATALTYVISLLGAYFILKERIELGRLIGIVVVGIGILIITLDPSMSL
>NC_011729.1|WP_015954169.1|2388099_2388942_-|ferritin-like-domain-containing-protein
MQLGSQAHKELFCKSFIESHLHYEPETLPWPELDGVALERLRGIPFWLEALKTERNAGNMVSAFAETIDDPLIQEAIALQGREETRHGRLIEFLIERYNIEIEEPTPIPMPKNIETAFTDFGFCECLDSYFAFGMFDVARQAQYLPEGFFTIFDPILHEEARHIVFFINWFTYQQINQGLGWSGFRGINTLWHYKRAVQDLISIFKAEGQGFTITGANNFMDNLTPELFFSTCVQENARRMNVFEAELLQPKLLPNISKIALGVLKFFPKGQPTPATEAR
>NC_011729.1|WP_015954170.1|2389480_2389744_-|DUF2283-domain-containing-protein
MTFNINYDQDVDAVYIRIENKTVLDFEQIAEGIIIEYDQDNHAVGIELFAVKTLNSERLARLMPLLPEGFKELIAEIVPKIPSLLTI
>NC_011729.1|WP_015954171.1|2389829_2390180_-|DOPA-4,5-dioxygenase-family-protein
MPDITNTAIKGFHAHVYYDASTKQNAQSLREQLEKNFVDIELGRWHDRPIGPHPRWSYQVAFSKELFGEIIPWLMLHQNGLVILVHPLTGNDLADHQDYAMWLGEKVPLNFDVLRK
>NC_011729.1|WP_015954172.1|2390296_2391199_-|D-hexose-6-phosphate-mutarotase
MNIEQLNQNYAIEPHIKFIEHKSGFPLIEIDNTTAKAVISVYGGQVLSFQPKSHSDDLLFVSNKAYYQQGKAIKGGVPICWPWFGPDPDSKGRPSHGFVRNRLSKVAQTQALSEETTKIILSLSDTPDTREIWAHPFELSLSLTIGSSLTLELVTRNLCEQAVSITQGFHTYFKVGDINQVQVLGLDNTNYFDKVDGGQQKLQTGSVTIDSEVDRIYTSVGEKLTIEDPSLGRRLCITSTGSKSAVVWNPWEKISLQMGDLEDDDYKRFLCVETVNAATDVINIPSGGEYKLMANYTVES
>NC_011729.1|WP_015954174.1|2393854_2394946_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLIGFKTEVKCNNKQKTLFFKHAGTARHAWNWGLGLTKQILDHNKDNLENKIKFPTAIDLHKWLVALVKPDNPWYYEVSKCAPQYALRDLRTAWDRSFKKIAKPPRFKKKGNGDSFTLDGSIEVIDHYKVKIPRIGIIRTYERLPFGVKPKSVTISLQADKWFISWKIEVETTQTPKSVDVVGIDLGVLKLATLSTGKVFEGEKSYKKYEKKLSRLQWLNRHKVIGSNNWRKAQVKITRLHRHIANIRKDTLHKLTTYLAKNHSKIVVEDLNVSGMLANRKLAKAVADMGFYEFRRQLEYKCKLYGSELIIADRWFPSSKLCSSCGVVKETLSLSDRVFNCECGVSLDRDLNASINLAHLAAS
>NC_011729.1|WP_015954175.1|2395419_2396586_-|LL-diaminopimelate-aminotransferase
MQLAKRLETLSTNVFADMDRAKNHARAIGKEIIDLSLGSSDLPASPHVINAIEQSLHDAKTHGYLLFHGTKTFREAVQEWYSNRFGITVDPETEILPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHYGGVHLAGGQMYTMPLLAENDFLPVFEEIPTLVLKQAKMMVLSYPHNPTSAIAPLSFFQKAVSFCREHQIVLVHDFPYCDIYFQENNPPASIFQADPQKEISIEFFTFSKSYNMGGFRIGFAIGNAQLIRALKQIKAVVDFNQYRGILNGAIAALQGSQESVKQTVETYKKRRDAFINALHSIGWQVPTPKATMYVWAKLPEPWTHNSVEFCTQLVAATGVAVSPGSGFGKCGEGYVRFALVQDPEVLELAVEKIASFI
>NC_011729.1|WP_015954176.1|2396676_2397003_-|thioredoxin
MSSVIEITDAQFQQEVLESKQPVLVYFWASWCGPCRLVSPSISWAAETYGDRLKVVKLEVDPNPDARSKCKVEGVPAIRLFKDQEILESSEGAIGKQQLQTLIDNHLN
>NC_011729.1|WP_015954177.1|2397124_2397904_-|PspA/IM30-family-protein
MGLFDRLSRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARSIAEQKRSEQQYNQNQTEANKWEQRAKLALSKGDEALAREALTRKKSFSETAAVLKQQLEQQSATVDQLKRNLVALESKISEAKTKKNMLQARSKAAKANEDLQKTLGNIGTSSAMGAFERMEQKVLEAEARSQAVGELAGSGLEDQFRMLESGSDVDDELALLKAQVQGGGALPGSTTTNALPESKSTTSSNSAVDAELEDLRRQIDNL

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Crispr_ID: NC_011729_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_14

2393451-2393698

TypeV-U4

Consensus_repeat	Method
TGAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	CRT
GTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	CRISPRCasFinder
GAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	PILER-CR

3 spacers

c2c9_V-U4

The CRISPR arrays of NC_011729_14

>merge|NC_011729|14|2393451-2393698|CRT,CRISPRCasFinder,PILER-CR
TGTATTTTCCAACAATTCCTATTCAACCCAATAGGTAGGGCACCGCTTTAGTGGCGCTCAACGCCTACAAGAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGGCCTCTGATTTGTTTGGCGCTATAGCCAACAATCAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGGTAGAAGGGACTCAAATAAGTTTAAAGTTTGAGGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG

>NC_011729|14|4|2393451-2393698|CRT
TGTATTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	CACCGCTTTAGTGGCGCTCAACGCCTACA
AGAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	CCTCTGATTTGTTTGGCGCTATAGCCAACAA
TCAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	TAGAAGGGACTCAAATAAGTTTAAAGTT
TGAGGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG

>NC_011729|14|13|2393455-2393698|CRISPRCasFinder
TTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	CACCGCTTTAGTGGCGCTCAACGCCTACAAGAA
GTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	CCTCTGATTTGTTTGGCGCTATAGCCAACAATCAA
GTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	TAGAAGGGACTCAAATAAGTTTAAAGTTTGAG
GTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG

>NC_011729|14|5|2393521-2393698|PILER-CR
GAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	CCTCTGATTTGTTTGGCGCTATAGCCAACAAT
CAAGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	TAGAAGGGACTCAAATAAGTTTAAAGTTT
GAGGTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954171.1\|2389829_2390180_-\|DOPA-4,5-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|378079
NC_011729.1\|WP_015954172.1\|2390296_2391199_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|185697
NC_011729.1\|WP_015954166.1\|2385126_2385492_+\|nitrogen-fixation-protein	unknown	unknown	gnl\|CDD\|238315
NC_011729.1\|WP_015954167.1\|2385846_2386701_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
NC_011729.1\|WP_015954179.1\|2399025_2400204_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NC_011729.1\|WP_015954170.1\|2389480_2389744_-\|DUF2283-domain-containing-protein	unknown	unknown	gnl\|CDD\|378367
NC_011729.1\|WP_049858474.1\|2387124_2387979_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NC_011729.1\|WP_015954163.1\|2381738_2382365_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341393
NC_011729.1\|WP_015954165.1\|2383228_2384830_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_011729.1\|WP_015954175.1\|2395419_2396586_-\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|180947
NC_011729.1\|WP_015954162.1\|2381485_2381686_+\|putative-nitrogen-fixation-protein-NifT	unknown	unknown	gnl\|CDD\|377752
NC_011729.1\|WP_015954169.1\|2388099_2388942_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NC_011729.1\|WP_015954181.1\|2401199_2401451_+\|MarR-family-transcriptional-regulator	unknown	unknown	unknown
NC_011729.1\|WP_015954183.1\|2402441_2403209_-\|lipoate--protein-ligase-family-protein	unknown	unknown	gnl\|CDD\|223173
NC_011729.1\|WP_015954174.1\|2393854_2394946_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_011729.1\|WP_015954178.1\|2398715_2398928_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954182.1\|2401447_2402230_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_011729.1\|WP_015954177.1\|2397124_2397904_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NC_011729.1\|WP_015954176.1\|2396676_2397003_-\|thioredoxin	unknown	unknown	gnl\|CDD\|365862
NC_011729.1\|WP_015954180.1\|2400223_2400982_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954171.1\|2389829_2390180_-\|DOPA-4,5-dioxygenase-family-protein	gnl\|CDD\|378079	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family. This family of proteins are related to a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore.	7.64542e-52
NC_011729.1\|WP_015954172.1\|2390296_2391199_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|185697	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.	6.794e-127
NC_011729.1\|WP_015954166.1\|2385126_2385492_+\|nitrogen-fixation-protein	gnl\|CDD\|238315	cd00562, NifX_NifB, This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).	1.02787e-07
NC_011729.1\|WP_015954167.1\|2385846_2386701_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	5.5346e-06
NC_011729.1\|WP_015954170.1\|2389480_2389744_-\|DUF2283-domain-containing-protein	gnl\|CDD\|378367	pfam10049, DUF2283, Protein of unknown function (DUF2283). Members of this family of hypothetical bacterial proteins have no known function.	1.06589e-11
NC_011729.1\|WP_049858474.1\|2387124_2387979_-\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	3.08616e-05
NC_011729.1\|WP_015954163.1\|2381738_2382365_+\|CBS-domain-containing-protein	gnl\|CDD\|341393	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	9.32245e-53
NC_011729.1\|WP_015954165.1\|2383228_2384830_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.90012e-09
NC_011729.1\|WP_015954175.1\|2395419_2396586_-\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|180947	PRK07366, PRK07366, LL-diaminopimelate aminotransferase.	0
NC_011729.1\|WP_015954162.1\|2381485_2381686_+\|putative-nitrogen-fixation-protein-NifT	gnl\|CDD\|377752	pfam06988, NifT, NifT/FixU protein. This family consists of several NifT/FixU bacterial proteins. NifT/FixU is a very small, conserved protein that is found in nif clusters; however, its function is unknown. Although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in K. pneumoniae has only a limited effect on nitrogen fixation.	8.25318e-29
NC_011729.1\|WP_015954169.1\|2388099_2388942_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	0.00219397
NC_011729.1\|WP_015954183.1\|2402441_2403209_-\|lipoate--protein-ligase-family-protein	gnl\|CDD\|223173	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].	1.19625e-32
NC_011729.1\|WP_015954174.1\|2393854_2394946_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.06553e-44
NC_011729.1\|WP_015954179.1\|2399025_2400204_+\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	1.37291e-48
NC_011729.1\|WP_015954182.1\|2401447_2402230_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.96736e-24
NC_011729.1\|WP_015954177.1\|2397124_2397904_-\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	1.67899e-53
NC_011729.1\|WP_015954176.1\|2396676_2397003_-\|thioredoxin	gnl\|CDD\|365862	pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.	4.2762e-33
NC_011729.1\|WP_015954180.1\|2400223_2400982_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	7.57057e-104

>NC_011729.1|WP_015954172.1|2390296_2391199_-|D-hexose-6-phosphate-mutarotase
MNIEQLNQNYAIEPHIKFIEHKSGFPLIEIDNTTAKAVISVYGGQVLSFQPKSHSDDLLFVSNKAYYQQGKAIKGGVPICWPWFGPDPDSKGRPSHGFVRNRLSKVAQTQALSEETTKIILSLSDTPDTREIWAHPFELSLSLTIGSSLTLELVTRNLCEQAVSITQGFHTYFKVGDINQVQVLGLDNTNYFDKVDGGQQKLQTGSVTIDSEVDRIYTSVGEKLTIEDPSLGRRLCITSTGSKSAVVWNPWEKISLQMGDLEDDDYKRFLCVETVNAATDVINIPSGGEYKLMANYTVES
>NC_011729.1|WP_015954171.1|2389829_2390180_-|DOPA-4,5-dioxygenase-family-protein
MPDITNTAIKGFHAHVYYDASTKQNAQSLREQLEKNFVDIELGRWHDRPIGPHPRWSYQVAFSKELFGEIIPWLMLHQNGLVILVHPLTGNDLADHQDYAMWLGEKVPLNFDVLRK
>NC_011729.1|WP_015954170.1|2389480_2389744_-|DUF2283-domain-containing-protein
MTFNINYDQDVDAVYIRIENKTVLDFEQIAEGIIIEYDQDNHAVGIELFAVKTLNSERLARLMPLLPEGFKELIAEIVPKIPSLLTI
>NC_011729.1|WP_015954169.1|2388099_2388942_-|ferritin-like-domain-containing-protein
MQLGSQAHKELFCKSFIESHLHYEPETLPWPELDGVALERLRGIPFWLEALKTERNAGNMVSAFAETIDDPLIQEAIALQGREETRHGRLIEFLIERYNIEIEEPTPIPMPKNIETAFTDFGFCECLDSYFAFGMFDVARQAQYLPEGFFTIFDPILHEEARHIVFFINWFTYQQINQGLGWSGFRGINTLWHYKRAVQDLISIFKAEGQGFTITGANNFMDNLTPELFFSTCVQENARRMNVFEAELLQPKLLPNISKIALGVLKFFPKGQPTPATEAR
>NC_011729.1|WP_049858474.1|2387124_2387979_-|EamA-family-transporter
MNNIILLISLVLTQVLGDIWLSRGMKEFGGANLFDPSGFVALIAHLFTNPWIWLGVATLVVSLLLYYVAVSRLDLSFVMPIHASSYVFNALLAWLILAEQVTFIRWMAALTITVGVFIVSISENPPTSKPITSALEHRTKSWFKRSMFFLLPLSFSLPKIWLFAVIIAFADGFGDIFNAKGMKQIGAVKLGSLPEMLQIGQKIITNHWIIQGITCQTLSFLSFVSALSWADISFVRPATALTYVISLLGAYFILKERIELGRLIGIVVVGIGILIITLDPSMSL
>NC_011729.1|WP_015954167.1|2385846_2386701_-|EamA-family-transporter
MGNFILLTFLVLTQVMGDILLGLAMNKFKTGNLFDLSGFWSLITYLVTSPWIWLGVITLVISLLLYYVAVSRLDLSFVLPILASNYILNALLAWLILDEKVSPLRWIATLVITVGVFIVTINKTRQTRQKFSSAVKNKFKSWVNFGLFALLPFSFSLSPTWSFILIIAVADGFGDLFNAKGMKQIGEVQFESFSHLLEVGKQVITNHWILLGITGQTIAFFSFVSALSLADISFVRPATALTYAISLVGAHFMLKEKIGWGRLVGIIVVGIGIILIDLDKGSSV
>NC_011729.1|WP_015954166.1|2385126_2385492_+|nitrogen-fixation-protein
MKIAIVSQDFQSIGGKTGRARNFLVYEASQETAPILLEKLEVPETEPTFHDLHLDDVTPHPLDQTVLITREAGEGLKERLSRRGITLYITSETDPLAAINGVLQGTLPTLDPTPHKDDGSC
>NC_011729.1|WP_015954165.1|2383228_2384830_+|helix-turn-helix-domain-containing-protein
MPYTIPDNCYSCGTCKPQCPTGAIHLDDGKYWIESGLCNDCNEYAGEPQCVVHCPISSPVPVQAKKGRYKALERVATNPDLFFNGKNNTFASSMVIWEACKLLTSTTILPWKTAVDGALSYQRPVKQGRGNLSFRLVENFDSDSLAQGNYVTSSNELETIDIRSACLHLIYAAYATTLEKPWEQEFVIDDQQLEKYLGLDKRKDLSKATKLTLLKTLAQQPCRITAAIDWPQQGKIKGFSVEEDFIWHLLEIKHHFQEDSNGCKHLIGLTFKIRAGLWAKYFLNKQGYKQRTVFYQYGILPKFLLNTVMSIWQQHQGAVRMILWLLFKAKMGRKQSIMVPTLMNIAYGKDKVTQAATQREQRKRLIQKFESNLEVLNSYELKPVFDPVTYFSEIQPLWARLVELPDDADDAIDFWINDGSQEQRLTDPAPRGKWNLLMQARILEFELPQEWDQQLAKFERKKQQRINKNPKSKISHRLSAEQILTARKRQGISQRELAQLIGKSQSWIRDLERGRFTAKPEDQLRLQKILNLS
>NC_011729.1|WP_015954163.1|2381738_2382365_+|CBS-domain-containing-protein
MLKASDIMTQDVATIKGSATVAEAVKLMKWKNLRALIVDVRSSQDAYGIVTHTDVITKVVAYGKDAEKIRVYEIMTKPCIVVNPDLGVEYVARLFANTGIRIAPVIQGSLLGIISESDILYKGDFLENPKLPLLQREVTRTIEEARSLAASYGPTSKECLEAWAIADELQAEAIYQEGVNPPEKTAFQLFCDEYPEVLQIHHKELMAV
>NC_011729.1|WP_015954162.1|2381485_2381686_+|putative-nitrogen-fixation-protein-NifT
MKVILSRRSDGNLSVYVPKKDLEEIVVNNTNGPDGTVLTLANGWELAFSSLADDIQLPQTLEAKKL
>NC_011729.1|WP_015954174.1|2393854_2394946_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLIGFKTEVKCNNKQKTLFFKHAGTARHAWNWGLGLTKQILDHNKDNLENKIKFPTAIDLHKWLVALVKPDNPWYYEVSKCAPQYALRDLRTAWDRSFKKIAKPPRFKKKGNGDSFTLDGSIEVIDHYKVKIPRIGIIRTYERLPFGVKPKSVTISLQADKWFISWKIEVETTQTPKSVDVVGIDLGVLKLATLSTGKVFEGEKSYKKYEKKLSRLQWLNRHKVIGSNNWRKAQVKITRLHRHIANIRKDTLHKLTTYLAKNHSKIVVEDLNVSGMLANRKLAKAVADMGFYEFRRQLEYKCKLYGSELIIADRWFPSSKLCSSCGVVKETLSLSDRVFNCECGVSLDRDLNASINLAHLAAS
>NC_011729.1|WP_015954175.1|2395419_2396586_-|LL-diaminopimelate-aminotransferase
MQLAKRLETLSTNVFADMDRAKNHARAIGKEIIDLSLGSSDLPASPHVINAIEQSLHDAKTHGYLLFHGTKTFREAVQEWYSNRFGITVDPETEILPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHYGGVHLAGGQMYTMPLLAENDFLPVFEEIPTLVLKQAKMMVLSYPHNPTSAIAPLSFFQKAVSFCREHQIVLVHDFPYCDIYFQENNPPASIFQADPQKEISIEFFTFSKSYNMGGFRIGFAIGNAQLIRALKQIKAVVDFNQYRGILNGAIAALQGSQESVKQTVETYKKRRDAFINALHSIGWQVPTPKATMYVWAKLPEPWTHNSVEFCTQLVAATGVAVSPGSGFGKCGEGYVRFALVQDPEVLELAVEKIASFI
>NC_011729.1|WP_015954176.1|2396676_2397003_-|thioredoxin
MSSVIEITDAQFQQEVLESKQPVLVYFWASWCGPCRLVSPSISWAAETYGDRLKVVKLEVDPNPDARSKCKVEGVPAIRLFKDQEILESSEGAIGKQQLQTLIDNHLN
>NC_011729.1|WP_015954177.1|2397124_2397904_-|PspA/IM30-family-protein
MGLFDRLSRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARSIAEQKRSEQQYNQNQTEANKWEQRAKLALSKGDEALAREALTRKKSFSETAAVLKQQLEQQSATVDQLKRNLVALESKISEAKTKKNMLQARSKAAKANEDLQKTLGNIGTSSAMGAFERMEQKVLEAEARSQAVGELAGSGLEDQFRMLESGSDVDDELALLKAQVQGGGALPGSTTTNALPESKSTTSSNSAVDAELEDLRRQIDNL
>NC_011729.1|WP_015954178.1|2398715_2398928_+|hypothetical-protein
MLLHDQQTNSLVKILDLEALFNPVQNTVCASSQAGEEEQSPKEFSKDRLNFPSGEKLPQCWMDADYRKPH
>NC_011729.1|WP_015954179.1|2399025_2400204_+|FtsX-like-permease-family-protein
MVSIARKNLFEDLPRFLIAQAGILFAVSLVTIQTGLLKGFTQSTTRLIDRSTADIWVTSEDITNFELTLPIPYERLTQAREVEGVAKAEAVILEGGLWRNSQDKISTVRVIGFDPKGELFSPGTITKGSLQAIEKPYTFIIDQSQLNSLGLENINDAGQIDSYKATLVGTTKDIQAIASSPFFLTSLESAKAYSYARPDFEAEPTTPATNPLNNRDNITYVLIKVEPGQNLQTLKQRLEEALPNIQAYTTSEMSQKTQNYWVRRTSIGFILGLGAIVGIVVGIVIVGQILYASVSDHLTEFGTLKAMGASDWVTYRIIIEQALWMAVLGYIPGMAVCLGLGAWTATTQGVVILITPAMAGGVFAVTVMMCIGSAIFAIQKVNRVDPAIVFKG
>NC_011729.1|WP_015954180.1|2400223_2400982_+|ABC-transporter-ATP-binding-protein
MTISTAYRDIKTITTPEGAAIATQGVEMVYETKAGRFSVLKGIDLEIPYGDVQILMGPSGSGKTTLLTILAGLLTPTAGSVKLLGQEITQMSRKQLAKFRLHHIGFVFQDFNLFPALTAAENIEMVFHLKGIRGKEVRRQTQLLLEQVGLGDKGKSLPKELSGGQKQRVAIARALVGRPQLIMADEPTASLDSHSGHRVVELLRQLAREAGCTVLMVTHDPRILDLADRVISLEDGHLASTPSYPTELTHRH
>NC_011729.1|WP_015954181.1|2401199_2401451_+|MarR-family-transcriptional-regulator
MPIVIISATPGLTTTEEILNLILSHPEGLTIKELSITLNRPVSMIQICLKSLIADKKIYVRTHKNRTQPLYYPYNSQINLELN
>NC_011729.1|WP_015954182.1|2401447_2402230_-|class-I-SAM-dependent-methyltransferase
MNDPNLTSTDQWDATRYETQHSFVWEYASDLIEILAPQAGEYILDLGCGTGQLTAQIAAQGAIAIGIDKSPTMIATASKNYPNLQFLVADGADFSFDYPFDGVFSNAALHWMTKPEAVIKCIGQALKPGGRFVAEFGGKGNIKQISRAVETVLKTEGYPIESLLNPWYFPSIGEYATLLENEGFDVTFGVLFDRPTPLEAEQEGMKNWIKMFGNHWLSLIPESEQPAIFSKIEAALRPYLYGENHWIADYRRLRIVAQKI
>NC_011729.1|WP_015954183.1|2402441_2403209_-|lipoate--protein-ligase-family-protein
MATSDRIPWRFIPLMSASGQLQMAIDTWLLQKHLQGNQPSVLRFYRFDPVAISLGFSQRSYPQHWDTFQWQGQPIERVYRPTGGRAVLHSGDLCYSIITSNIKGKRSEIYQHLSQFLIQGWQTLGLDLYYGEARRGYIHNPSCFGTVTNSDLADAQGNKFIGSALRCSHEGIIQQGSMLLDPDPHLFKAIFGEDAPKSQFSHLSEDQTFLATVITTLTAAASRCFNIDLIPQPLSDTELIEITKLMKIDTVKGVH

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Crispr_ID: NC_011729_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_15

2456856-2456925

TypeV

Consensus_repeat	Method
ACTGTTAAGTGTTCACTGTTAAC	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NC_011729_15

>merge|NC_011729|15|2456856-2456925|CRISPRCasFinder
ACTGTTAAGTGTTCACTGTTAACAATACCCTAGAAATAACCTGATACCTTAATAACTGTTAACTGTTCAC

>NC_011729|15|14|2456856-2456925|CRISPRCasFinder
ACTGTTAAGTGTTCACTGTTAAC	AATACCCTAGAAATAACCTGATAC
CTTAATAACTGTTAACTGTTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954235.1\|2450842_2451103_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NC_011729.1\|WP_015954249.1\|2468273_2469761_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_011729.1\|WP_015954241.1\|2458439_2459207_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954237.1\|2454125_2455724_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NC_011729.1\|WP_015954245.1\|2464791_2465841_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_011729.1\|WP_015954240.1\|2456943_2458443_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143449
NC_011729.1\|WP_015954246.1\|2465989_2466550_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954242.1\|2459306_2461127_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|369473
NC_011729.1\|WP_041237710.1\|2452127_2453369_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NC_011729.1\|WP_041238158.1\|2449367_2450426_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_011729.1\|WP_015954234.1\|2450483_2450846_-\|DUF5615-family-PIN-like-protein	unknown	unknown	gnl\|CDD\|375906
NC_011729.1\|WP_015954231.1\|2447480_2448902_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NC_011729.1\|WP_015954236.1\|2451539_2452064_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954238.1\|2455764_2456004_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NC_011729.1\|WP_015954239.1\|2456007_2456799_+\|peptidase	unknown	unknown	gnl\|CDD\|227836
NC_011729.1\|WP_071819367.1\|2448969_2449335_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|189968
NC_011729.1\|WP_015954248.1\|2466863_2467877_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|180962
NC_011729.1\|WP_015954243.1\|2461414_2462581_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376268
NC_011729.1\|WP_157867394.1\|2463407_2464733_+\|DUF2029-domain-containing-protein	unknown	unknown	unknown
NC_011729.1\|WP_083775327.1\|2466500_2466701_+\|collagen-like-protein	unknown	unknown	gnl\|CDD\|189968

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954235.1\|2450842_2451103_-\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.31889e-22
NC_011729.1\|WP_015954248.1\|2466863_2467877_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|180962	PRK07403, PRK07403, type I glyceraldehyde-3-phosphate dehydrogenase.	0
NC_011729.1\|WP_015954237.1\|2454125_2455724_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NC_011729.1\|WP_015954245.1\|2464791_2465841_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NC_011729.1\|WP_015954240.1\|2456943_2458443_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143449	cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.	0
NC_011729.1\|WP_015954242.1\|2459306_2461127_-\|trypsin-like-serine-protease	gnl\|CDD\|369473	pfam07705, CARDB, CARDB. Cell adhesion related domain found in bacteria.	9.64e-09
NC_011729.1\|WP_041237710.1\|2452127_2453369_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.52378e-55
NC_011729.1\|WP_041238158.1\|2449367_2450426_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.71798e-24
NC_011729.1\|WP_015954234.1\|2450483_2450846_-\|DUF5615-family-PIN-like-protein	gnl\|CDD\|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	7.28599e-26
NC_011729.1\|WP_015954231.1\|2447480_2448902_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NC_011729.1\|WP_015954238.1\|2455764_2456004_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	5.70327e-13
NC_011729.1\|WP_015954239.1\|2456007_2456799_+\|peptidase	gnl\|CDD\|227836	COG5549, COG5549, Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones].	9.58433e-55
NC_011729.1\|WP_071819367.1\|2448969_2449335_-\|hypothetical-protein	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	5.19017e-05
NC_011729.1\|WP_015954243.1\|2461414_2462581_-\|hypothetical-protein	gnl\|CDD\|376268	pfam18849, baeRF_family7, Bacterial archaeo-eukaryotic release factor family 7. Bacterial family of the archaeo-eukaryotic release factor superfamily. Likely to play roles in biological conflicts or regulation under stress conditions at the ribosome. Consistent with this, many members of the family associate on the genome with HPF-like ribosome hibernation factor.	1.20946e-57
NC_011729.1\|WP_015954249.1\|2468273_2469761_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_011729.1\|WP_083775327.1\|2466500_2466701_+\|collagen-like-protein	gnl\|CDD\|189968	pfam01391, Collagen, Collagen triple helix repeat (20 copies). Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.	0.000101132

>NC_011729.1|WP_015954239.1|2456007_2456799_+|peptidase
MIRKTRIGQYLSFSSLVSLLLSLGILTIIWVSGLGVTAKESEGVLPPLQIHPLPSTLKNWHDPQNAGDYFSYLEESPVGSLIWSEFPIKIYWDQPANLVDNSASHQRFQQWVTEVEKAIAEWNSYLPLVEVKQEELGDIIIKRDNPPLGTTINPETGKLEIPRARSAQTSYKFYFKGDNPPVLSHQMIVLISPNLSQELILSAIRHELGHALGIWGHSPVETDALYFSQVRNPPPISVRDINTLKKVYQQPTRLGWTISQRSH
>NC_011729.1|WP_015954238.1|2455764_2456004_+|preprotein-translocase-subunit-SecG
MNIVELVRIIWAICAGLLIVLVLLHSPKGDGIGGIGGQAQLFTSAKSAEKTLNQVTWTLSILFVALTIVLSAGWLQTPQ
>NC_011729.1|WP_015954237.1|2454125_2455724_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MADAPIAPVVLVILDGWGYRQTTDYNAIAVANTPVMDSLWEAYPKTLIRTSGKDVGLPEGQMGNSEVGHLNIGAGRIVPQELVRITDAIEDGSIFQSPVLINLCDEVKGRGGKLHLIGLSSAGGVHSHLCHLLGLLDLAKLHSVSDVCVHAITDGRDTNPTEGVNVIEAIQAHIDKIGVGRISTVCGRYYAMDRDRRWDRVKKAYDLLTEDGEGDGRSASQILKDFYAQDITDEFILPTRVAPGAIEPGDGIIFYNFRPDRARQLCYAFTMPDFDGFERDLIQPLSFVTFTQYDPKLPVKVVFEPQSLTNILGEVIAKKGLRQFRTAETEKYPHVTYFFNGGLEQPFEGEDRELIQSPMVATYDKAPVMSAEAVTDTACAAIKKGIYSLVVMNYANPDMVGHTGNMEAAVQAIEAVDRCLGRLLGCINKMGGTVLITADHGNAEYMRDEEGNPWTAHTTNPVPFILVEGEKRKIPGHGANVVLRNDGRLADIAPTILDILQLPQPNNMTGKSLIEPAGFDVKTNRTPVRISL
>NC_011729.1|WP_041237710.1|2452127_2453369_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MYKAYKFRMYLNIEQQIALAKSFGCARWYWNYSLNLCQETYNKTGKGLSRGYIQGLLPGLKKEYPWLTDAYSQCLQVVALNLSTAYKNFFDKRAKLPRFKSKHGRQSISYPANVKFEGDYIKLPKIGLVYCRRHRDMMGTIKTVTISKNPDGKYFACVLVDDGKDTPTPSTEGNAIGIDLGLTHFCITSNGSKSDNPRHIAKHSKNLKKKQQGLSRKKKGSIRRGKARKLVAKVHSKIARCREDFLHKLSRKIVNENQVIAVENLNVKGMVRNRNLAKAISDVGWGMFCTMLKYKAQREGKTYIEIDRFFPSSKTCNVCLNQVGSLPLDVRSWTCEHCQTNHDRDINAAINIKNEALRTLELGTRGSAVLGSPQVERLPCDTADGGDVRRIGGKLDYLLDAIPDEIGSRNHNL
>NC_011729.1|WP_015954236.1|2451539_2452064_+|hypothetical-protein
MNTYSERGLKQINWPILVMFVLGFWLSATIVLDLVIMPSLLASGMMATQGFASAGYLIFGIFNRLELLCAAIVLSGFLVFRRHHTLTHFHESLSVFLAGFLLVITLIYTYILTPYMSGLGLQLNWFDSFNTMNPAMIPMHWSYWILEGCKLLFGFILLKWCYKDYYLVLNEEKQ
>NC_011729.1|WP_015954235.1|2450842_2451103_-|DUF433-domain-containing-protein
MLKTLDRITFNPKIMAGKACIRGMRIPVSLIINLVANGKPTKEILEEYPDLEEEDIRQSLLYAAWLAEERVIALNLVHQSSPEKVK
>NC_011729.1|WP_015954234.1|2450483_2450846_-|DUF5615-family-PIN-like-protein
MKFLADMGVSLRTVEWLRNIGYDIVHLREQGLQRLPDEEILIKARIEGRILLTMDLDFTNLLAWSGETLPSVILVRLGNENYSKINKQLQTVLTECIEDLQAGAIISVSDESFRVRHLPI
>NC_011729.1|WP_041238158.1|2449367_2450426_+|class-I-SAM-dependent-methyltransferase
MPESLTQTAYQAFQQGKALFGLAHKNMSNRLTRLFVPNWEKIGQPLSKEEFDQLQQGRIQLLETDWKDAQEGVYPTSLLFENPWNEFFLYYPAVLLDLPLSWQKIRDREYQNFSSQVEQDGYPNYYLQNFHYQTDGYLSDWSANLYDLQVELLFNGTADPMRRRILKPLKKGLNAFSDVLPKQIRVLDVACGTGRSLKMIRTVFPKVSLFGADLSPAYLRKANQLLSETPEELPQLVQANGEELPYQDNYFHALTSVFLFHELPPQARQNVIEECFRVTKPGGIFIICDSIQAIDSPQFQTSMDNFPKMFHEPYYKHYTTDNLVERLEKAGFENIDVENHFMSKYWVAHKPV
>NC_011729.1|WP_071819367.1|2448969_2449335_-|hypothetical-protein
MTWTVSNQVLYLFVNIINLPAICHCSKIDLWDGGGECGERGECGERGECGERGECGECGECGERGECGECGERGECGERGECGECGECGERGERGECGECGERGECGECGERGECGERGEI
>NC_011729.1|WP_015954231.1|2447480_2448902_+|type-I-glutamate--ammonia-ligase
MPETPQEVLKLIQDNNIQMIDLKFIDMPGIWQHCSFYYDQIDESSFVDGVPFDGSSIRGWKAINESDMSMVPDPTTAWIDPFYAEPTLSMICSIKEPRTGEWYSRDPRSIAAKAVEFLQSTGIGDTAFFGPEAEFFVFDDVRFDQTEHKSYYYVDSVEGRWNSGREEEGGNLGYKPRYKEGYFPVPPTDTIQDMRTEMLLTMGKCGVPIEKHHHEVATGGQNELGIRFDTLIKSADNLMIYKYVIKNVAKKYGKTVTFMPKPLFNDNGSGMHTHQSIWKSGQPLFWGDGYANLSPMALHYIGGILRHAPALLALTNPTTNSYKRLVPGFEAPVNLAYSQGNRSASIRIPLSGTNPKAKRLEFRCPDATCNPYLAFAAMLCAGIDGIKNQIDPGDPLDVDIYDLSPEELSKVPSTPGSLEAALENLEKDHAFLTDTGVFTEDFIENWIEYKLDNEVNPMRLRPHPYEFALYYDV
>NC_011729.1|WP_015954240.1|2456943_2458443_+|aldehyde-dehydrogenase-family-protein
MPPLTCLNYINGQWLPAKVRELSESRNPANWSEVVATFPLSTSADVNVAVEAAKNAYPSWRLVPAPERAEYLQRVAQILSQRKEEIATLMTREMGKPIAEARGDVQEGIDCAFYYAGEGRRLFGQTTPSELHNKFAMTMRMPIGVCALITPWNFPVAIPCWKSLPALVCGNTMILKPAKDTPACATALIEVFHQAGFPPGVVNLVHGIGPEVGHDLLEHPEVDLVSFTGSSLVGAQVGEICGRTHKRVCLELGGKNAQIVMEDANLELALEGALWGAFGTTGQRCTATSRLILHRDIKAEFTEKLLEKTAKLRLGSGLDPNTDIGPLISSTQREKVNKYMEIAQEEGAKILCGGNKPQDPALKQGFFFEPTILDGVTSQMRVAQEEIFGPVVCLMEVNSFSEAIALLNDTPYGLSSSIYTQDINRAFQAMRDLEAGITYINGPTIGAEVHLPFGGVKQTGNGHREAGTSALDVFSEWKTVYVDFSGRLQRAQIDNRNRS
>NC_011729.1|WP_015954241.1|2458439_2459207_-|hypothetical-protein
MVTSLGTNPDESSTLQIREIQELSISISAQKLNPTMLSEDFLKASGIIPGDWELNKQPVLNPNYAQVSFQNGVSIATQPRNITFVETLKNLDAVQLPELVHRYIEKLPLADYQGLSIGLKSVVPLSGGANAARQYITQTLLAPGSWQEYGQAPVQAALNLVYQLEKCQLNLSINEARLQLPDQRYLPALLFSGNFNYEITSNNGQERISQLNQGIDEWKTDLEAFREIVSQRFLGQQESLFPERVIPAVPINPNS
>NC_011729.1|WP_015954242.1|2459306_2461127_-|trypsin-like-serine-protease
MVYSESSINNLFNTKLEKDYLAVGLKSSHKDDLLSQKNQEWEDKYQSMFSPFNPWQPNGILGTDNRQRVNDTLTFPFSGVARIVTYWSNGEITIGSGAMVSPYHLLTAGHNLHDVSEGGYAQRVEVILGSKGTITRDDRANFEYYGVANSVNLRVDNVWANGENYDYDWGLITVDRNIGNYTGWFNYGFNNISNGTQVNVAGYPSDFFDPNKDGIWDNYDMTYQVGTISEVSNFVLKSTDLDFATGISGSPMWINQGNEKVIYGIASAMFYNTITRAGIYNQFTRITENRANTLTNWINQDNASLQPIDKPDWVDYDKWFDTNSASFLSTQITPGNSFSITTTIRNNGTAPSSAPIIVSFYASTDSSITTSDFKIGDVIVSPIAPFASESITWTGKFPTIAAGNYYVGWIIDSDNRSQEFDELNNTGMIKNSTLRINAPTTSPSTPTLPSTVIDWQISDSLLQTPAYRFYNTIAGGHFFTTSPTERDAVLRSLPHFQYEAVGFTASGVGGENLLPVYRFYNTVAGGHFFTMSEVERDTVINTQPQYIYEGVGFYTYGANSNLGQDIYRFYNTVAGGHFFTMSQAERDTVINTLPQYVYEGVAFEAG
>NC_011729.1|WP_015954243.1|2461414_2462581_-|hypothetical-protein
MSLLSIDELKTLVEHSQGLCVSLYMPTYTRGAETRQNPIRFKNLIKQAQEYLQEEYHLDRNDAVNFVQPAMDLDKEEFWQHQDEGLAIFVGDNFFQYYRLPLNFNELVVVSDRFHLKPLMPLLTGDGEFYILALSQKEVRLFMGTRDTIKEIEMENVPHNMTEALQYDEPENSLQNRISTSRGGTNNSFQQTGVFHGQGSPDTDDNRRNILQFFLQLDRGVQDYITNKQAPLVLMGVDYLLPIYQEANTYQHLLEDAITGNPKTLGAEELHTQVWPIVEPYFTQSQKKAIDQYQELVGVGRASSNLKEVVSAACYGRVAELFVAVGKQQWGNFDPQADQLQIHEQPEPGDEDLLNLASVQTFLNGGTIYAVEPEKVPEGASLAAVFRY
>NC_011729.1|WP_157867394.1|2463407_2464733_+|DUF2029-domain-containing-protein
MEFPQNQTLTKFVKFLLITAGVITFFAFLIDLKNTLTYWGSDLRNRIVGARLLIEGMNPYFFQWHQGISEKLLDPQDSLKSITTRVSVTPTVLTIHSMIAGLSFLNQKLIWLLVQWGAFLSTVLIFYKTNSKFIKKILILIIGWFFANSFFWRYHVNAGQMYVIYVFLVSLALFVLHQNFKYHENLSGFILGLTMSLRPPFILFFIPFLIYRKWKLLFSVITGLLFGVLIPFVFMNFSIWKSYFFAVTGMTQVINPSSSMPSTNNAIPQTAINYPKIIEGMNFRLIPKHWGFPDSSLQNLLTMLNIDIPSKLLIISAVFMILLLSFLFFVKWIKIFSINRVFLAVMVLYLISEFLIPIPRYAYYDIQWILPLFIIVEESNTSNLLSNKLIMVLLVGLLLGLGSFNWMYGAFYLSIFLISFYVIVTSIIVIKEKGKYQIQGE
>NC_011729.1|WP_015954245.1|2464791_2465841_-|tRNA-2-thiouridine(34)-synthase-MnmA
MNRVVVGLSGGVDSSTAAASLHHQGYDVVGLTLWLMKGKGQCCSEGMVDAAFICEQLGIPHHIVDSRDVFEKNIIDYLVSGYEVGITPLPCSQCNRAVKFGPMLNYARQELGIDRIATGHYARIGYDEVSGRYQLLRAVDRNKDQSYFLYDLTQDLLAATLFPLGNQTKEETRRIAHEFGLKTADKPESQDLCLIEAHGSMQEFLDKYIKQKEGDIVDLKGKVLGKHKGIHHYTIGQRKGLGVAAPEPLYVVKLDPIMNRVIVGNRADAGQSECNVSRMNWVSIPDPSTPIQTEAQVRYRSFPVRVNVIPLGDNRITLVFDEPQFGITPGQAAVLYQGDILLGGGIIEK
>NC_011729.1|WP_015954246.1|2465989_2466550_+|hypothetical-protein
MLNLKLNLLSGRCFHHLGQFLVIFSGFSIGNIAYSAPLLVGELPPPPSMNEDFSSYPEESVETIPYFEETPTSPDSEVLQREYNFQAPQPNYYSVPNREPSHATDKSVELYRVEVIAEDKSLLSQVREIEPFAYFQINGTGIYAGLFQDQQEAQKRVQQLINQGLSARIVPVNYSVSSSYDIPVQN
>NC_011729.1|WP_083775327.1|2466500_2466701_+|collagen-like-protein
MLIIVLVRPTISLSKIECGERGECGERGERGECGERGECGERGERGECGERGECGECRDVACNVST
>NC_011729.1|WP_015954248.1|2466863_2467877_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MIRVAINGFGRIGRNFLRCWLGRQDSQLEVVGLNDTSDPKTNAHLLKYDSMLGKLDADISADENSIIVNGKTIKCYSDRNPLNLPWADWGIDLIIESTGVFVDYEGASKHIVAGAKKVLITAPGKGPNIGTYVMGVNHDEYEHDAHAVVSNASCTTNCLAPVVKVIHENFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPDMKGKLNGIALRVPTPNVSVVDLVAQVEKPTLAEQVNEVLKAASENSLKGILEYNDLPLVSSDYRGTDCSSTIDGSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLAELVARKWK
>NC_011729.1|WP_015954249.1|2468273_2469761_+|UDP-N-acetylmuramate--L-alanine-ligase
MVKTVDFNGRPFHFIGIGGIGMSGLAYILAKRHLPVSGSDVRSSHITQRLQSVGAKVFNTQEATNLTIFQPTPEDSLTTLIPCASGESKKVEKTHQADSALSPNSLPQIICSTAIADNNSEYQAAKELGYPIFHRSDVLAALIKDYYSIGVAGTHGKTTTSSLIGYMLLGGGLDPTIIVGGEVDAWDGNARLGQGQFLVAEVDESDGSLTKHSPRIGIITNIELDHPDHYQTLDEVVKTFQIFEQQCETLIACIDCKTVRTHFKPQITYSLDPDREADYTVKNVTYKTDGSMAEVWEKGQYLGQMHISLLGQHNISNALAAVAVGRTLGLDFEVIASGIATFIGAKRRFEHKGYSQGITFIDDYAHHPSEVRCTLEAARLRLDQDRYRRVVAIFQPHRYSRTATFMDEFATSFDDADVVIVTDIYSAGEVNIGQISGQQVADAISRHHQQVFYHPSLKSLGSFLSQILEPGDLALFLGAGNLNQIIPELISPKVA

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Crispr_ID: NC_011729_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_16

2576236-2576390

Unclear

Consensus_repeat	Method
AAATAATAAAGTTGTATAATTTC	PILER-CR

2 spacers

cas5,cas7,cas8b3,cas6

The CRISPR arrays of NC_011729_16

>merge|NC_011729|16|2576236-2576390|PILER-CR
AAATAATAAAGTTGTATAATTTCCTACGATGAACCTTTTGATTTCTCGTTATCTAACCTAGAATCCTAAAAAATAAAGTTGTATAATTTCGTTGGCTTGATAAATAGCTTAGTTCAGATTCCTCCTTTTGTCGAATAATAAAGTTGTATAATTTG

>NC_011729|16|6|2576236-2576390|PILER-CR
AAATAATAAAGTTGTATAATTTC	CTACGATGAACCTTTTGATTTCTCGTTATCTAACCTAGAATCCT
AAAAAATAAAGTTGTATAATTTC	GTTGGCTTGATAAATAGCTTAGTTCAGATTCCTCCTTTTGTC
GAATAATAAAGTTGTATAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954323.1\|2566906_2567200_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954339.1\|2586116_2586761_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NC_011729.1\|WP_015954336.1\|2582869_2583499_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NC_011729.1\|WP_015954328.1\|2571011_2571896_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_011729.1\|WP_041238165.1\|2572459_2573323_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|224139
NC_011729.1\|WP_015954344.1\|2587991_2588198_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954330.1\|2573809_2574994_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224212
NC_011729.1\|WP_015954340.1\|2586852_2587167_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954335.1\|2581171_2581597_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954324.1\|2568103_2568985_+\|TIGR02587-family-membrane-protein	unknown	unknown	gnl\|CDD\|370584
NC_011729.1\|WP_083775330.1\|2581677_2582151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379756
NC_011729.1\|WP_015954327.1\|2570324_2570924_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NC_011729.1\|WP_015954338.1\|2584398_2586120_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|187844
NC_011729.1\|WP_015954343.1\|2587626_2587992_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954325.1\|2568981_2569404_+\|TIGR02588-family-protein	unknown	unknown	gnl\|CDD\|131637
NC_011729.1\|WP_015954333.1\|2575738_2576170_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	unknown	unknown	gnl\|CDD\|379205
NC_011729.1\|WP_015954337.1\|2583510_2584371_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_011729.1\|WP_015954341.1\|2587179_2587410_+\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NC_011729.1\|WP_015954332.1\|2575508_2575742_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954326.1\|2569597_2570284_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|183588

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954339.1\|2586116_2586761_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	6.66126e-89
NC_011729.1\|WP_015954341.1\|2587179_2587410_+\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	2.9257e-08
NC_011729.1\|WP_015954328.1\|2571011_2571896_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.43347e-27
NC_011729.1\|WP_041238165.1\|2572459_2573323_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|224139	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism].	1.86562e-87
NC_011729.1\|WP_015954330.1\|2573809_2574994_-\|hypothetical-protein	gnl\|CDD\|224212	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].	0.000200624
NC_011729.1\|WP_015954336.1\|2582869_2583499_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	6.62852e-85
NC_011729.1\|WP_015954324.1\|2568103_2568985_+\|TIGR02587-family-membrane-protein	gnl\|CDD\|370584	pfam09622, DUF2391, Putative integral membrane protein (DUF2391). This entry is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. Proteins containing this entry appear to span the membrane seven times.	1.38558e-132
NC_011729.1\|WP_015954325.1\|2568981_2569404_+\|TIGR02588-family-protein	gnl\|CDD\|131637	TIGR02588, TIGR02588, TIGR02588 family protein. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial. [Hypothetical proteins, Conserved].	4.12054e-46
NC_011729.1\|WP_015954327.1\|2570324_2570924_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.69693e-134
NC_011729.1\|WP_015954338.1\|2584398_2586120_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|187844	cd09713, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csx13_N family.	8.98184e-75
NC_011729.1\|WP_083775330.1\|2581677_2582151_-\|hypothetical-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	6.99268e-30
NC_011729.1\|WP_015954333.1\|2575738_2576170_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	5.54787e-22
NC_011729.1\|WP_015954337.1\|2583510_2584371_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.22538e-23
NC_011729.1\|WP_015954326.1\|2569597_2570284_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|183588	PRK12552, PRK12552, ATP-dependent Clp protease proteolytic subunit.	3.54455e-171

>NC_011729.1|WP_015954333.1|2575738_2576170_-|putative-toxin-antitoxin-system-toxin-component,-PIN-family
MKIYQLVLDTNIILSGLRSKKGASYKLLNLLNDRRLQINISTTLIFEYEQILKREYKDLELSLEDIDDIINAICAIANQHKIFYLWRPLAKDPNDDFLIDLAIEAQADFIISYNKKDLEPVEKFGILILTPKQFLQLIGEITP
>NC_011729.1|WP_015954332.1|2575508_2575742_-|hypothetical-protein
MNLNTEIPDALYQQLETLANRENLSIDQLITIALSAQISAWMTKDYIEEKAKQGNWDKFKQVLNKVSEREPLDYDKL
>NC_011729.1|WP_015954330.1|2573809_2574994_-|hypothetical-protein
MSQLLFHVPLITGSLVVGGVVIASGGSVLQSGIAGVATGATGFATSALVTQSQISKQRLVEQERDRLKLEIENQKRLLAFGSELEHLQGLRELLQQSIDELKQYKNSLNEDEYINPQLEESVTTFDFDLVIEQDGEESTTEKEQMENNIKVIIDFLENRDIKIKTIPTEDAADDIINSLSKFLGENYDGLRELLAIIKRSMQNSSSFSLSVKEYRQKDISNVCQFCTRLHDIAFLEEYRYFKSPKYLIKAKATTLPAAHSFFSGKWLERFVLLAVQKCVSLISSELEKDIVFSYLLNPQITLPNGDDFELDLICHASGSFFWIEAKSGNYQQHISKYSKMSKILNLDSRHSIMVLPDISEDRCTALTSLFSMTVCSLSCLEEILVETIRKDQTV
>NC_011729.1|WP_041238165.1|2572459_2573323_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
METPEKLEEITQVLRSVAWGASDILQSYYRGEDPDKKLNVQEDKKDGPVTAADLATNHYILEKLQAVFSEEEFGYLSEETHKGDEPIRKDWVWIIDPLDGTRDFIDKTGEYAIHIALAYQGRPMVAVVAVPEADKIYIASKGNGTTVEKRNGETYSVHVSQRNKIEELYLVASRTHRDQRFQDMLDRMPFKARNYVGSVGCKISTILEQQSDVYISLSGKSAPKDWDFAAPELILTEAGGTFTHFSGEPLTYNKGDVRQWGGLMASNGRCHEELCQLATSILADIDG
>NC_011729.1|WP_015954328.1|2571011_2571896_-|pentapeptide-repeat-containing-protein
MIEKQEAINLKNKYDAGERDFCNLELRRIDLRGLNLSHANFKGADLSYANLREINLSGADLREAFLNEADLTGANLQGANLEGTYLIKAYLMKTNLQEANLSKAYLTGAYLSKSNLTKANLSGAYLNGAKLSGADLTDISYDETTHFDVNFPLNKVETKKELSRTPSLLNLKVTIEDLLKSLNHLSQLSNRYLGSTMTVRYWETTRPQSEWLHQFEIKSSAQISFTGNQPGYLDLSQLRLAQEWISRFVKICSQIIQDYPKMIDRKQLVLSLTPSLMTEATQLDNHKSDVTSLF
>NC_011729.1|WP_015954327.1|2570324_2570924_+|ATP-dependent-Clp-protease-proteolytic-subunit
MPIGVPSVPFRLPGSQYERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPNKPIYLYINSPGGSVTAGMAIYDTMQYIKSEVVTICVGLAASMGSFLLAAGTPGKRLALPHSRIMIHQPMGGTGRRQATDIEIEAKEILRIRQQLNQMLAERTGKTLEQIEKDTDRDYFMSPYEAQEYGLIDKVIEERAA
>NC_011729.1|WP_015954326.1|2569597_2570284_+|ATP-dependent-Clp-protease-proteolytic-subunit
MSSQIKAVQTAYYGDANFRTPPPDLESLLLKERIVYLGMPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAIGFETEAFAICDTINYIKPPVHTICIGQAMGTAAMILSAGTKGCRASLPHATIVLNQNRTGAQGQATDIQIRAKEVLANKRTMLEIFAKNTGQTVEKLAKDLDRTFYMTPEQAKEYGLIDRVLESRKELPKPLTSVG
>NC_011729.1|WP_015954325.1|2568981_2569404_+|TIGR02588-family-protein
MNKKADTYPSKKSKFRHHLPAEWVTFSVACLIVMILVGLVLYTWITQEDKPPILSVSSPQSIREVQGQYYVPFTVKNTGGGTAESVQVTGELILDERIEESGEQQIDFLSGGETKEGAFIFSHNPQKGKLVLRVASYKLP
>NC_011729.1|WP_015954324.1|2568103_2568985_+|TIGR02587-family-membrane-protein
MVQQAWKREIKDIICGISGGFLFGIPLMYTMEVWWIGSYTKPPLMLGVLGVTFVINFLLNRTDGFRQRRPDDSLQAAMDSTEALAIGIVCATCMLILLREIGGETPLDEALGKIVFEAVPFSIGVALARTMLTAQENGENGGSNTGNLPEFPSKRERKKYRYQATLADIGATLVGALLIAFNIAPTDEIPMLASAVNAPDLLAVMGTSLIISYMIVFVAGFTTQKERLQQQGIFQHPLVETSVCYLLSLIAAAFMLWFFHRISLSDSWTSWLQDIILLGLPATIGGAAGRLAI
>NC_011729.1|WP_015954323.1|2566906_2567200_-|hypothetical-protein
MNHPYSFSDCTSTQLEKIALTRFRALVNCLPKDCRIFREPWNCSTILCLDFASCPHKLDNIKLQDDQLLSACRELGLANAVIFRVGNKFRGMSGVTP
>NC_011729.1|WP_015954335.1|2581171_2581597_-|hypothetical-protein
MAEPLTTGLLVNLAVQEFIKSGTGDLAKRFTTEALTKIPVLWNKIKTRLTGKSTRVDEALDKVENGDSTAIEIITKNLDVVLDEDPDFAVELQTLAQTIQAGKIQDNSSMIQNNSDNAKGWQTKVEGGTAYIGEIYINQGQ
>NC_011729.1|WP_083775330.1|2581677_2582151_-|hypothetical-protein
MLRKQCPALYAWLYRHDKDWLNDEHSPLLQRPVATNNRVNWEQRDKSIKIQVQEAVTQLLNREIPDRITIGKIGVMTGLKAILEQHLDKLPVTKVYLSEVVESVEIFQNRRIQWAIGEIHRRGEEVKTWKVMRLAGLKDKEFERVEKIVLSMKKTIV
>NC_011729.1|WP_015954336.1|2582869_2583499_-|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MKSVAIYIDVPVATFRQSHGREYGKTYPYPPHSTVYGLLLSLVGEMDLQKHCGVQLAIAMLSQPAKSKILRTIHRFKFKKEDHEGNQRPDYQEILTDIRFIVWVKSAEDKNNPSLPERLEQALLNPDSVKRWGVLYLGESDDLVNNIKLVTENFSVKSREWLLKDDSGEITLPYWVDHFGFQGTRWFRYRLEAITCSTPPESAWITIQT
>NC_011729.1|WP_015954337.1|2583510_2584371_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MRYLFGNLLTHYAPASLNRGEHDGNEQLIQQILWQDEPHTTISPFSVRWNVRYQFQEQGEPVYEKWDKVQRIRIPQGKAHNPNSYIDDDVMGFMVTEAAKKNQKGTSNARQGALGTNRAISLTPYDGTTFNYYNSREKDNLSVHSTNFHNTCYQYCFALDSQHLENQSRILNVIDAFIYLGQVGGHYNESLFDFSPESLVFRWTKDNCPRFLYCFEQDENKQVIAPKLIEKVESEDIEAEELWIGGEITKRLTLENAHTFRGIKATAKDLKRKISEDLKFPSKEPK
>NC_011729.1|WP_015954338.1|2584398_2586120_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MMDTSTQPKIHLHLHAPDTTLIHRAAIQGLWMTLKQLETRFPTPSQRIGELSWKLTPYSVSLDWKGQDKRVLDWLLKQAFQVDKRGLISLTGLNPQTIPLINKIHLHQALTATLLQHNRFVTTIFDPYKVSGINLYKTPPYLLLNLLIKLLNPGQFYLLLKGKPNPQASIKVKAYKAELELNYKQLSAYIHQNFSHQLCKSKTHQWIDGYIPIVSWLYPGAIVRHQTIRQYNQCKERTEYAFALLFLPIACHYLILSKGINEQMKSKKKNPAKYLLVIPDPINLEESAQIRWRLNFTNYQNLYVSSVEEGALSYYGKEITQNFSPQRCQIILYGKLMKKSQLRNPIDIQDFKITKIALKTYQLACCYLQENKIIKTEKNFLVRLNLIRGMISKNLLDKQPIWRNLWSILKERDSYGEMRQQLKYNQQGLFTMIKNSDEISGSHHAFIDVIHEALKIIYAQIYQDNPSAASKKIERENERLKSKLLDCYKEETFRHLMAKLLSKAGNLPTLNKNRRLVLPILTGKIDWKEARDITLIALSSYPTQARLNRELLIFFVFPLLLDAQLYQLALIIL
>NC_011729.1|WP_015954339.1|2586116_2586761_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MLAHNSPLPNPYIDLKFPVSGHTIPLNHGYPLYSAISHQFPVIHDLTTLSIHPITGKPEFPQLLHLTEDSYLCLRLPINQVPLIYRLAGKTLTLNKHKIRLGLPESQIITPHHHLYSRIVIIRGFDEPHAFLEAAQRQLNQRNISATLNLITRPEGEPIRRTIEIKGKTLIGYGVKISDLSKQDAISLQEQGIGGKHKMGCGVFTPVKHKPNKK
>NC_011729.1|WP_015954340.1|2586852_2587167_+|hypothetical-protein
MYLNPNAIISPNKLTQYLLIPLPKDDKSQYLAQGGYTLDNWQQLERDLREQILTREAQPTLKTKYGQKYQIIGSLNCPNGVILNIKTIWIVTEKTTRFVTLFPA
>NC_011729.1|WP_015954341.1|2587179_2587410_+|DUF4926-domain-containing-protein
MTFPLFSQVQLTQDIPEFNLKKGSVGVIVEHYPMSQGEDGYSLEGLIPQDTVEVTESQIKLIKVEQTPEKATFFNR
>NC_011729.1|WP_015954343.1|2587626_2587992_-|hypothetical-protein
MLDFSFYSHDKKALNNVDISQNFYEWLIQSEFSKIGQSEEQEMQGDGETVKVSVVLLEGENRRKFSDFFRDAIVHESDSMLEKLGESPSKEEYIKASSRLKQLQDLRKAIEDEKFKYFSRG
>NC_011729.1|WP_015954344.1|2587991_2588198_-|hypothetical-protein
MPYIEIKTRKQIDSTLAQKIIDKGCVSAVLTTGVITKPAKKLFDEYDIAYAEKIPEKKFMESEAQEEH

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Crispr_ID: NC_011729_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_17

2582378-2582627

Unclear

Consensus_repeat	Method
GTGAGTAACGCCTTACGACATCAAGCTATAAATCAC	PILER-CR
AGTAACGCCTTGCGACATCAAGCTATAAATCAC	CRISPRCasFinder

3 spacers

cas5,cas7,cas8b3,cas6

The CRISPR arrays of NC_011729_17

>merge|NC_011729|17|2582378-2582627|PILER-CR,CRISPRCasFinder
TGAATAACGCCTTGCGACATCAAGCAATAAATCACAACTGATAAACGAGGTAAAAAACGTAAAGAATGGGTGAGTAACGCCTTACGACATCAAGCTATAAATCACGAGACAGGCCACATAAATTCTTGGTACAATGTTGTGAGTAACGCCTTGCGACATCAAGCTATAAATCACCTTGTAAAGCTTCACGAGGAAACACGCCGCACAAATCTTTGTAAGTAACGCCTTACGACATCAAGCTATAAATCAC

>NC_011729|17|7|2582378-2582627|PILER-CR
TGAATAACGCCTTGCGACATCAAGCAATAAATCACA	ACTGATAAACGAGGTAAAAAACGTAAAGAATGGG
TGAGTAACGCCTTACGACATCAAGCTATAAATCACG	AGACAGGCCACATAAATTCTTGGTACAATGTTG
TGAGTAACGCCTTGCGACATCAAGCTATAAATCACC	TTGTAAAGCTTCACGAGGAAACACGCCGCACAAATCTTTG
TAAGTAACGCCTTACGACATCAAGCTATAAATCAC

>NC_011729|17|15|2582380-2582627|CRISPRCasFinder
AATAACGCCTTGCGACATCAAGCAATAAATCAC	AACTGATAAACGAGGTAAAAAACGTAAAGAATGGGTG
AGTAACGCCTTACGACATCAAGCTATAAATCAC	GAGACAGGCCACATAAATTCTTGGTACAATGTTGTG
AGTAACGCCTTGCGACATCAAGCTATAAATCAC	CTTGTAAAGCTTCACGAGGAAACACGCCGCACAAATCTTTGTA
AGTAACGCCTTACGACATCAAGCTATAAATCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954345.1\|2588210_2588435_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954339.1\|2586116_2586761_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NC_011729.1\|WP_015954341.1\|2587179_2587410_+\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NC_011729.1\|WP_015954328.1\|2571011_2571896_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_011729.1\|WP_041238165.1\|2572459_2573323_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|224139
NC_011729.1\|WP_015954344.1\|2587991_2588198_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954327.1\|2570324_2570924_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NC_011729.1\|WP_015954330.1\|2573809_2574994_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224212
NC_011729.1\|WP_015954340.1\|2586852_2587167_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954336.1\|2582869_2583499_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NC_011729.1\|WP_083775330.1\|2581677_2582151_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379756
NC_011729.1\|WP_015954335.1\|2581171_2581597_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954338.1\|2584398_2586120_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|187844
NC_011729.1\|WP_015954343.1\|2587626_2587992_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954325.1\|2568981_2569404_+\|TIGR02588-family-protein	unknown	unknown	gnl\|CDD\|131637
NC_011729.1\|WP_015954333.1\|2575738_2576170_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	unknown	unknown	gnl\|CDD\|379205
NC_011729.1\|WP_015954337.1\|2583510_2584371_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_011729.1\|WP_015954346.1\|2588406_2589324_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|365803
NC_011729.1\|WP_015954332.1\|2575508_2575742_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954326.1\|2569597_2570284_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|183588

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954339.1\|2586116_2586761_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	6.66126e-89
NC_011729.1\|WP_015954341.1\|2587179_2587410_+\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	2.9257e-08
NC_011729.1\|WP_015954328.1\|2571011_2571896_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.43347e-27
NC_011729.1\|WP_041238165.1\|2572459_2573323_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|224139	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism].	1.86562e-87
NC_011729.1\|WP_015954330.1\|2573809_2574994_-\|hypothetical-protein	gnl\|CDD\|224212	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].	0.000200624
NC_011729.1\|WP_015954336.1\|2582869_2583499_-\|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	6.62852e-85
NC_011729.1\|WP_083775330.1\|2581677_2582151_-\|hypothetical-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	6.99268e-30
NC_011729.1\|WP_015954327.1\|2570324_2570924_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.69693e-134
NC_011729.1\|WP_015954338.1\|2584398_2586120_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|187844	cd09713, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-C subtype; also known as Csx13_N family.	8.98184e-75
NC_011729.1\|WP_015954325.1\|2568981_2569404_+\|TIGR02588-family-protein	gnl\|CDD\|131637	TIGR02588, TIGR02588, TIGR02588 family protein. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial. [Hypothetical proteins, Conserved].	4.12054e-46
NC_011729.1\|WP_015954333.1\|2575738_2576170_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	5.54787e-22
NC_011729.1\|WP_015954337.1\|2583510_2584371_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.22538e-23
NC_011729.1\|WP_015954346.1\|2588406_2589324_-\|AAA-family-ATPase	gnl\|CDD\|365803	pfam00004, AAA, ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.	3.05548e-23
NC_011729.1\|WP_015954326.1\|2569597_2570284_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|183588	PRK12552, PRK12552, ATP-dependent Clp protease proteolytic subunit.	3.54455e-171

>NC_011729.1|WP_083775330.1|2581677_2582151_-|hypothetical-protein
MLRKQCPALYAWLYRHDKDWLNDEHSPLLQRPVATNNRVNWEQRDKSIKIQVQEAVTQLLNREIPDRITIGKIGVMTGLKAILEQHLDKLPVTKVYLSEVVESVEIFQNRRIQWAIGEIHRRGEEVKTWKVMRLAGLKDKEFERVEKIVLSMKKTIV
>NC_011729.1|WP_015954335.1|2581171_2581597_-|hypothetical-protein
MAEPLTTGLLVNLAVQEFIKSGTGDLAKRFTTEALTKIPVLWNKIKTRLTGKSTRVDEALDKVENGDSTAIEIITKNLDVVLDEDPDFAVELQTLAQTIQAGKIQDNSSMIQNNSDNAKGWQTKVEGGTAYIGEIYINQGQ
>NC_011729.1|WP_015954333.1|2575738_2576170_-|putative-toxin-antitoxin-system-toxin-component,-PIN-family
MKIYQLVLDTNIILSGLRSKKGASYKLLNLLNDRRLQINISTTLIFEYEQILKREYKDLELSLEDIDDIINAICAIANQHKIFYLWRPLAKDPNDDFLIDLAIEAQADFIISYNKKDLEPVEKFGILILTPKQFLQLIGEITP
>NC_011729.1|WP_015954332.1|2575508_2575742_-|hypothetical-protein
MNLNTEIPDALYQQLETLANRENLSIDQLITIALSAQISAWMTKDYIEEKAKQGNWDKFKQVLNKVSEREPLDYDKL
>NC_011729.1|WP_015954330.1|2573809_2574994_-|hypothetical-protein
MSQLLFHVPLITGSLVVGGVVIASGGSVLQSGIAGVATGATGFATSALVTQSQISKQRLVEQERDRLKLEIENQKRLLAFGSELEHLQGLRELLQQSIDELKQYKNSLNEDEYINPQLEESVTTFDFDLVIEQDGEESTTEKEQMENNIKVIIDFLENRDIKIKTIPTEDAADDIINSLSKFLGENYDGLRELLAIIKRSMQNSSSFSLSVKEYRQKDISNVCQFCTRLHDIAFLEEYRYFKSPKYLIKAKATTLPAAHSFFSGKWLERFVLLAVQKCVSLISSELEKDIVFSYLLNPQITLPNGDDFELDLICHASGSFFWIEAKSGNYQQHISKYSKMSKILNLDSRHSIMVLPDISEDRCTALTSLFSMTVCSLSCLEEILVETIRKDQTV
>NC_011729.1|WP_041238165.1|2572459_2573323_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
METPEKLEEITQVLRSVAWGASDILQSYYRGEDPDKKLNVQEDKKDGPVTAADLATNHYILEKLQAVFSEEEFGYLSEETHKGDEPIRKDWVWIIDPLDGTRDFIDKTGEYAIHIALAYQGRPMVAVVAVPEADKIYIASKGNGTTVEKRNGETYSVHVSQRNKIEELYLVASRTHRDQRFQDMLDRMPFKARNYVGSVGCKISTILEQQSDVYISLSGKSAPKDWDFAAPELILTEAGGTFTHFSGEPLTYNKGDVRQWGGLMASNGRCHEELCQLATSILADIDG
>NC_011729.1|WP_015954328.1|2571011_2571896_-|pentapeptide-repeat-containing-protein
MIEKQEAINLKNKYDAGERDFCNLELRRIDLRGLNLSHANFKGADLSYANLREINLSGADLREAFLNEADLTGANLQGANLEGTYLIKAYLMKTNLQEANLSKAYLTGAYLSKSNLTKANLSGAYLNGAKLSGADLTDISYDETTHFDVNFPLNKVETKKELSRTPSLLNLKVTIEDLLKSLNHLSQLSNRYLGSTMTVRYWETTRPQSEWLHQFEIKSSAQISFTGNQPGYLDLSQLRLAQEWISRFVKICSQIIQDYPKMIDRKQLVLSLTPSLMTEATQLDNHKSDVTSLF
>NC_011729.1|WP_015954327.1|2570324_2570924_+|ATP-dependent-Clp-protease-proteolytic-subunit
MPIGVPSVPFRLPGSQYERWIDIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPNKPIYLYINSPGGSVTAGMAIYDTMQYIKSEVVTICVGLAASMGSFLLAAGTPGKRLALPHSRIMIHQPMGGTGRRQATDIEIEAKEILRIRQQLNQMLAERTGKTLEQIEKDTDRDYFMSPYEAQEYGLIDKVIEERAA
>NC_011729.1|WP_015954326.1|2569597_2570284_+|ATP-dependent-Clp-protease-proteolytic-subunit
MSSQIKAVQTAYYGDANFRTPPPDLESLLLKERIVYLGMPLFSSDEIKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAIGFETEAFAICDTINYIKPPVHTICIGQAMGTAAMILSAGTKGCRASLPHATIVLNQNRTGAQGQATDIQIRAKEVLANKRTMLEIFAKNTGQTVEKLAKDLDRTFYMTPEQAKEYGLIDRVLESRKELPKPLTSVG
>NC_011729.1|WP_015954325.1|2568981_2569404_+|TIGR02588-family-protein
MNKKADTYPSKKSKFRHHLPAEWVTFSVACLIVMILVGLVLYTWITQEDKPPILSVSSPQSIREVQGQYYVPFTVKNTGGGTAESVQVTGELILDERIEESGEQQIDFLSGGETKEGAFIFSHNPQKGKLVLRVASYKLP
>NC_011729.1|WP_015954336.1|2582869_2583499_-|type-I-MYXAN-CRISPR-associated-protein-Cas5/Cmx5/DevS
MKSVAIYIDVPVATFRQSHGREYGKTYPYPPHSTVYGLLLSLVGEMDLQKHCGVQLAIAMLSQPAKSKILRTIHRFKFKKEDHEGNQRPDYQEILTDIRFIVWVKSAEDKNNPSLPERLEQALLNPDSVKRWGVLYLGESDDLVNNIKLVTENFSVKSREWLLKDDSGEITLPYWVDHFGFQGTRWFRYRLEAITCSTPPESAWITIQT
>NC_011729.1|WP_015954337.1|2583510_2584371_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MRYLFGNLLTHYAPASLNRGEHDGNEQLIQQILWQDEPHTTISPFSVRWNVRYQFQEQGEPVYEKWDKVQRIRIPQGKAHNPNSYIDDDVMGFMVTEAAKKNQKGTSNARQGALGTNRAISLTPYDGTTFNYYNSREKDNLSVHSTNFHNTCYQYCFALDSQHLENQSRILNVIDAFIYLGQVGGHYNESLFDFSPESLVFRWTKDNCPRFLYCFEQDENKQVIAPKLIEKVESEDIEAEELWIGGEITKRLTLENAHTFRGIKATAKDLKRKISEDLKFPSKEPK
>NC_011729.1|WP_015954338.1|2584398_2586120_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MMDTSTQPKIHLHLHAPDTTLIHRAAIQGLWMTLKQLETRFPTPSQRIGELSWKLTPYSVSLDWKGQDKRVLDWLLKQAFQVDKRGLISLTGLNPQTIPLINKIHLHQALTATLLQHNRFVTTIFDPYKVSGINLYKTPPYLLLNLLIKLLNPGQFYLLLKGKPNPQASIKVKAYKAELELNYKQLSAYIHQNFSHQLCKSKTHQWIDGYIPIVSWLYPGAIVRHQTIRQYNQCKERTEYAFALLFLPIACHYLILSKGINEQMKSKKKNPAKYLLVIPDPINLEESAQIRWRLNFTNYQNLYVSSVEEGALSYYGKEITQNFSPQRCQIILYGKLMKKSQLRNPIDIQDFKITKIALKTYQLACCYLQENKIIKTEKNFLVRLNLIRGMISKNLLDKQPIWRNLWSILKERDSYGEMRQQLKYNQQGLFTMIKNSDEISGSHHAFIDVIHEALKIIYAQIYQDNPSAASKKIERENERLKSKLLDCYKEETFRHLMAKLLSKAGNLPTLNKNRRLVLPILTGKIDWKEARDITLIALSSYPTQARLNRELLIFFVFPLLLDAQLYQLALIIL
>NC_011729.1|WP_015954339.1|2586116_2586761_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MLAHNSPLPNPYIDLKFPVSGHTIPLNHGYPLYSAISHQFPVIHDLTTLSIHPITGKPEFPQLLHLTEDSYLCLRLPINQVPLIYRLAGKTLTLNKHKIRLGLPESQIITPHHHLYSRIVIIRGFDEPHAFLEAAQRQLNQRNISATLNLITRPEGEPIRRTIEIKGKTLIGYGVKISDLSKQDAISLQEQGIGGKHKMGCGVFTPVKHKPNKK
>NC_011729.1|WP_015954340.1|2586852_2587167_+|hypothetical-protein
MYLNPNAIISPNKLTQYLLIPLPKDDKSQYLAQGGYTLDNWQQLERDLREQILTREAQPTLKTKYGQKYQIIGSLNCPNGVILNIKTIWIVTEKTTRFVTLFPA
>NC_011729.1|WP_015954341.1|2587179_2587410_+|DUF4926-domain-containing-protein
MTFPLFSQVQLTQDIPEFNLKKGSVGVIVEHYPMSQGEDGYSLEGLIPQDTVEVTESQIKLIKVEQTPEKATFFNR
>NC_011729.1|WP_015954343.1|2587626_2587992_-|hypothetical-protein
MLDFSFYSHDKKALNNVDISQNFYEWLIQSEFSKIGQSEEQEMQGDGETVKVSVVLLEGENRRKFSDFFRDAIVHESDSMLEKLGESPSKEEYIKASSRLKQLQDLRKAIEDEKFKYFSRG
>NC_011729.1|WP_015954344.1|2587991_2588198_-|hypothetical-protein
MPYIEIKTRKQIDSTLAQKIIDKGCVSAVLTTGVITKPAKKLFDEYDIAYAEKIPEKKFMESEAQEEH
>NC_011729.1|WP_015954345.1|2588210_2588435_-|hypothetical-protein
MIDKEFQTDEDKMINRLEAHRDFITWVIKRLEAEGIACERTTGNSSSGDILYYNAEDELRVKEIVRQINSEYNQ
>NC_011729.1|WP_015954346.1|2588406_2589324_-|AAA-family-ATPase
MPSYPQENSGLLQIPHAEIQKRIFGHKLFGLDSLQECLFRFCKAVITADKSRIQDFIFYDLVPSILLYGPPNTGKTTLCHLLFDRLKKEVTNEVNFYTIDIGQMLDPALGQSSRNLEKAFEDLRKVCSSGSSAFLVIDELDSFCMSRSRTQEHDAIRRAMTTLILELDRLHPSSTRKLILFGITNVHNLIDTAVVRRFSLKHSVDASLSWNDFCAYIEYLSKPINYVFQEHDLKQLYDGYKRRELKSGDIKAFYKEILIDVICKDEEVSIKDKLFSLFSEGFSTNEHLIKTYGEFVDDRQRISNR

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Crispr_ID: NC_011729_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_18

2614729-2614830

Orphan

Consensus_repeat	Method
AGTCTTTTTAGTTAACAGTTAACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_18

>merge|NC_011729|18|2614729-2614830|CRISPRCasFinder
TTTCATTTTAGTCATTAGTTATTAGTCTTTTTAGTTAACAGTTAACAGTTAACTGTTAACAGTGGTTTAGTGAGAGAGTCATTTTAGTTAACAGTTAACAGT

>NC_011729|18|16|2614729-2614830|CRISPRCasFinder
TTTCATTTTAGTCATTAGTTATTAGT	CTTTTTAGTTAACAGTTAACAGTTAACTGTTAACAGTGGTTTAGTGAGAG
AGTCATTTTAGTTAACAGTTAACAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954376.1\|2619692_2620166_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_011729.1\|WP_015954378.1\|2622851_2623553_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|234902
NC_011729.1\|WP_015954366.1\|2609989_2610538_+\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NC_011729.1\|WP_041238169.1\|2602481_2604155_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NC_011729.1\|WP_015954375.1\|2618343_2619696_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|381085
NC_011729.1\|WP_015954367.1\|2610604_2610730_+\|photosystem-II-protein-Y	unknown	unknown	gnl\|CDD\|368833
NC_011729.1\|WP_015954365.1\|2609367_2609874_-\|TIGR02652-family-protein	unknown	unknown	gnl\|CDD\|370602
NC_011729.1\|WP_015954380.1\|2625437_2626526_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|215402
NC_011729.1\|WP_015954377.1\|2620175_2622458_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NC_011729.1\|WP_015954373.1\|2617458_2617914_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954362.1\|2607562_2607961_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954372.1\|2616677_2617391_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_011729.1\|WP_015954364.1\|2608890_2609334_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NC_011729.1\|WP_015954371.1\|2614935_2616492_-\|peptidase-M16	unknown	unknown	gnl\|CDD\|223685
NC_011729.1\|WP_015954369.1\|2611392_2613105_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NC_011729.1\|WP_015954361.1\|2604920_2607452_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|226857
NC_011729.1\|WP_015954363.1\|2608060_2608396_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954374.1\|2617961_2618333_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|376809
NC_011729.1\|WP_015954379.1\|2623691_2625122_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NC_011729.1\|WP_015954368.1\|2611036_2611375_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954376.1\|2619692_2620166_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.73411e-43
NC_011729.1\|WP_015954378.1\|2622851_2623553_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|234902	PRK01112, PRK01112, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase.	5.23208e-152
NC_011729.1\|WP_015954366.1\|2609989_2610538_+\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	9.86879e-68
NC_011729.1\|WP_041238169.1\|2602481_2604155_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.48991e-06
NC_011729.1\|WP_015954367.1\|2610604_2610730_+\|photosystem-II-protein-Y	gnl\|CDD\|368833	pfam06298, PsbY, Photosystem II protein Y (PsbY). This family consists of several bacterial and plant photosystem II protein Y (PsbY) sequences. PsbY is a manganese-binding protein that has an L-arginine metabolising enzyme activity.	1.40685e-11
NC_011729.1\|WP_015954365.1\|2609367_2609874_-\|TIGR02652-family-protein	gnl\|CDD\|370602	pfam09654, DUF2396, Protein of unknown function (DUF2396). These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N-terminus.	5.56889e-119
NC_011729.1\|WP_015954380.1\|2625437_2626526_+\|chorismate-synthase	gnl\|CDD\|215402	PLN02754, PLN02754, chorismate synthase.	0
NC_011729.1\|WP_015954377.1\|2620175_2622458_-\|GAF-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	0
NC_011729.1\|WP_015954379.1\|2623691_2625122_-\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NC_011729.1\|WP_015954375.1\|2618343_2619696_-\|PAS-domain-S-box-protein	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	3.38454e-29
NC_011729.1\|WP_015954364.1\|2608890_2609334_-\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	3.88656e-10
NC_011729.1\|WP_015954371.1\|2614935_2616492_-\|peptidase-M16	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.65369e-96
NC_011729.1\|WP_015954369.1\|2611392_2613105_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	7.55643e-38
NC_011729.1\|WP_015954361.1\|2604920_2607452_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|226857	COG4449, COG4449, Predicted protease of the Abi (CAAX) family [General function prediction only].	0
NC_011729.1\|WP_015954374.1\|2617961_2618333_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	7.95686e-29
NC_011729.1\|WP_015954372.1\|2616677_2617391_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.22489e-36

>NC_011729.1|WP_015954369.1|2611392_2613105_+|mechanosensitive-ion-channel-family-protein
MKKKLLLFLSLIILTFALILISPLAYSGDDSQAENPIDQLVFPMNNLSGDEIDGFPVVLNDSTLFMIQESVGDFTPEERARTISKRLKKLAQDDSIILNKISLEEQSDKTSIIVDNHVLITITERDSQAARTPRLELANEYLEIIKNAIAQYRKQQTIGYLISASINSVIITLLTGVVFFIVNLTFAKTRNWLNLEQERHIIPLRFQNLELISAERLANILLNLIQFVRGVLFLGIIFVYIPFILSLFPTTRAWGQKYIDYFLGTIQFIGESFIKTFPNLVMIFVVIIITYYVNRFLKFIFYEIEKGNLSFAGFYPDWAQPTYNILKFFVIAIAVIFVFPYVPGSRSPAFQGVSVFLGILFSLGSSSAVSNIVAGIILTYTRAFQIGDQVKIGDISGDIEEKNLLVTRVRTAKNVLVTLPNSSLLSTNIINYSASARETKIPLVLSAKVAISYHTPWRKVHETLVKSAKATEHILEDPYPYVLQTSLNEFYISYELNVYVHPNIHTSKELDTIYSELYQNIQDKCYEANIELTCSQYTALRDGNHTTIPDNYLSQDYHPPSFRVESSNKS
>NC_011729.1|WP_015954368.1|2611036_2611375_+|hypothetical-protein
MTSDTKLVKVQRQTLQRLEEERIEQEKVGDILLLLENLIEREEATAKVILECLYDIGSVNLINKKVPSSSLRGILKAIARMSKPAFKIVALYWFKKNCPRLITDWLYSQVTF
>NC_011729.1|WP_015954367.1|2610604_2610730_+|photosystem-II-protein-Y
MDWRVLIVLAPVIIAGSWALFNIGAAAIRQVQEFLNRDKLA
>NC_011729.1|WP_015954366.1|2609989_2610538_+|gamma-carbonic-anhydrase-family-protein
MVNNVSNLTNFWPPVDLSAAAFVAPNAVVMGDVSLAQGSSVWYHAVIRGDVERIEIGAYTNIQDGAILHGDPGQVTRLEEYVTVGHRAVIHAAHIERGSLIGIGAVILDGVRVGAGSIIGAGCIVTKDVPERSLMVGVPARRVREVSPEQVEELIAHALRYEKLALVHAGKGSDTGFTSLTD
>NC_011729.1|WP_015954365.1|2609367_2609874_-|TIGR02652-family-protein
MNSSLQYPIFGPEIHCPHCRQIIPALTLTDTYLCPRHGAFEANPENGELIHLQSGRHWRRWNGEWYRQHTHPDGIRFEIHEALDRLYTQGFRATKVIIASRYKELVSAYLERNTPWRGNGESQLPRLYGLPVEFSADPPNEPCWDVINFDLEKEPGVPKRYPYFRLFE
>NC_011729.1|WP_015954364.1|2608890_2609334_-|VOC-family-protein
MHHASIRTADIHRAIAFYEILGFTVNERFTTGYTLACWMEGLGGRIELIQIPEPKPAPDAFGDEHYVGFYHLSFDLTDLTQDLPSWLNQLSALYADAALHNPQQIKPLKILLEPVQQMIGDKVYEVAFIADPDGLPLEFIRVLSRVE
>NC_011729.1|WP_015954363.1|2608060_2608396_-|hypothetical-protein
MMSIQEQARFLQYRQRLRDLHRQATLLSRLSSEIRGKKAQIHQNQCFYKKAIAQFPLSLEVREKEIIQSYDHDNYKKTLIQPLVRHLRCSQRRTTAYHKNQPLTNCIAFLN
>NC_011729.1|WP_015954362.1|2607562_2607961_+|hypothetical-protein
MLTDDLLKNNTLQDRIENVVRYAPSGLTIGELSAILAEHINQVHPICQLLIKHGKLVYDSYSHKLKHPYSKPNVRKTFKQNSKFLTLNKKELLPGCPSHWSLRQCFKHLGYQHHLLDSLTIAESLNPQKNLN
>NC_011729.1|WP_015954361.1|2604920_2607452_+|CPBP-family-intramembrane-metalloprotease
MAIKKPKIRFQKWIALFAIVVSLFILLFPRHQGETVSISNYAISQRANFNQSSYYPLPQSINSTLYKPTAPWVGRLILPSGEQIKSVNNPLMSSDWVWIEIYHTPPEFRELIGKTVQLSWTQNPRLEFYRQLITTNIKFSQEAIQSEKNGLVVPTRLNGRSNVGALQSLAGARPNDDVVVGFDLVQVNSNQQNFPLLLLEQVPIQVTGQYYGLVQIEGTDTNLKSIPPNCPGTPPCPNEFFRVRHYNPQSKQFDGVAETIRIPQQPVLKEGRFASTPKDLENSPAGKAGWYIYGAKDQRGIFTVQALKPRALFQLNPQQIILGKQEALAFLSQEQWKNTPESKGTIESILINPTATNPKSALQGWKEGDYGLVVHLFGGIGGKKGESFVMDTVTGHFAYGIARIIRDPFTDELQFDITYEQVYAHNTEGIIAGAQTWTTFMGNLERGWLNTRPVSDVIIKLEGITTEYNFDGFRLLPLKELLKQLAIMAARYRTGDGTGYAAVTPATSCVQDSNQALYIAIEQIKKSVNSNQIQDWLEKHPNSKTAENFKQLVALGTALEVVLTPQGVVRTDWQENAQYLSGIKEDHYFVSDQSLLSILLSWRSMLPKRAYDEVTQIFLNQKAQLWVLKTNQVGGWNPDIFPVAPTVLFGNIPIISPVLRRILVAAVTLPTVQDGLIGLGILLIYGVIALPLGLSKGFLKWSPYRGSKKSLLLGIGITFISPAIIEEIAFRVVLLPHPIENASIWTGLMWGTLSLFIFVIYHPLNAKTFYKRGYPTFFQPIFLILTTLLGLACIVAYSLTGSLWIIVILHWIVVVIWLFLLGGEAKLDGGVDSFDKTLKGDLN
>NC_011729.1|WP_041238169.1|2602481_2604155_-|hypothetical-protein
MPILAFLMSLLITFFIPPSHHLINLNAAQADSAQAPLFDNLGNYHHPISTDSSLAQRYFDQGLTLAYGFNHAESARSFQQATQLDPNCAMCYWGIALVQGPNINAPMADESVSQAWDALKKAIALSNQAPDPEKAYIQALAKRYTSDPLKDRSALDLDYANAMREVAQKYPDDLDAATLFADALMTTMPWNYWQENGEPKPETVELLATLESVLKRNPNHAGANHLYIHAVEKEHPELAIPAADRLQNLVPASGHLVHMPSHIYIRVGRYHDSVVANQEAIKADQDYLQYPHPESIYTAAYMPHNQHFLWFGALMTGQSKIAMEAAQNTAKVDPQQMRQPDFAGVLQHYSVIPLYTLIRFSQWDDILATPAPDRDLLYPTGVWHYSQGMAFAAKGNLKQANQQLQYLEAIAKDPALETLKIWAFNSTGDILKIASNVLAGEIAATQGNHDQAIAYLETAVNLENKLVYTEPPDWYSPTRYLLAVQLLAANRPQEAEEAFRADLKIYPENGWSLYGLQESLRAQGKTQEAQTINKRFQEAWKYADINLTAFNLDFRNS
>NC_011729.1|WP_015954371.1|2614935_2616492_-|peptidase-M16
MLRQVIRQSRSLISLIIFVSLLLFNWSNYPVVPVAYAQSETPQSIQPYLDRVIERVTEFTLDNGMKFIVLENHEAPVVSFYTHADVGGANEPVGKTGVAHFLEHLAFKGTTDIGTTNYPQEQKLLEQLDQLSAQIKAAQKANKTEQVAKLQQEFGQIQAQAQQLVKQNEFGRIVEKEGGVGLNAATSADATMYFYSFPSNKVELWMSLESERFLDPVFREFYKEQQVILEERRLRTENSPVGRLVEAFLDAAYTEHPYKRPVIGYDEDIRNLSRSDVQQFFDTYYVPNNLTIAIVGDVDPQEIQKLAKIYFGRYPAKPKPPQVTAVEPKQTETRNVTIEFPSQPWYIEGYHRPALNAPNNAVYDVIASLMSDGLTSRLYKSLVEEQKVALVAQGFNGFPGDKYPNLVLFYAMTAPNASLEQVQTALQAEIERLKTEPVSEKELKRVKTNLRATLLRALNSNSGMARLLTEYEVKTGSWRNLFEQLDQIAAVTPEDIQQVAQQTFTPENRTIGRIINKQ
>NC_011729.1|WP_015954372.1|2616677_2617391_+|glutathione-S-transferase-family-protein
MVSEFAPELQFYFNPNCPYAQRSWIALLELNVNFKPIEIELGSDNKTDWFLALNPNGKVPVIQQGETIVYESLIVNEYLSEVFGGHLMPSEAGKRAWGRILMGRCDSHLVKLSYSYLSHKREEDSAKDEQLKQDLEAELRFLDQAIQKGGGTYFLGEELSLVDIAYVPFFQRISVTLPAFKHFDLKEKNLPYLNQWLEAIALRESCIKTSMNPEKIKEIYSHFLKIDYFKKVGIATQ
>NC_011729.1|WP_015954373.1|2617458_2617914_-|hypothetical-protein
MKLKKQLQSLIKEAPEHGVSSIVMEKAITPVLSAFAKQLTHPKYYLITNVDGNWLLTTLSHQERPEQEKTVIYAFATPEDARTFQKNTISKLKIIAIPVTHLLFQVFAIKKIDSIIFLPTPGNLEKGIEISGLELQNTIKKQLQEIRFSIA
>NC_011729.1|WP_015954374.1|2617961_2618333_+|fluoride-efflux-transporter-CrcB
MLEILLVFLGGGLGSIARYLMGQLMTIHFPNILSLGTFTVNIIGSFIIGLVISLINKNQWNPQIGLLLATGFCGGFTTFSSFSYENTAYLKNNDYLLSFGYTIMSLFWGFAATFLGIYLVKRG
>NC_011729.1|WP_015954375.1|2618343_2619696_-|PAS-domain-S-box-protein
MNQTVTTLLIVDDNPDDRLTFKRYLNRYESVYQIIEASSASEGLELVKTFDIDGILLDFRLPDEDGLEFIQQLKQHNNPFSCPIIMLTGVGNQSVAVEAMKNGVHDYLVKSDITPDNLHKAIQNSLEKFRLRRELAQSEQRFRATFEQAAVGIAHLGLDNRLLRFNQRFQKIVGYSQHYLQDKTCIDIIHPEDRQYYQENFQQLLTYQTLTFSQEKRYLRPDNSPIWVNVTLSIVRQDSGEPDYIISVVEDINTRKQTEAALKQANEHLHALVAQLQQQNQERILLSELNTYLQTCTSVKEAYCILADLIHPLFPGFDVGVCRIDESGTEVKLVSHWGKTFVNHPRFLAQECWALRLNRVHWSNNSQGSLLCPHCHDYTPSIACCVCIPILVQGKPLGLIILSNSQPGQLSQEKQQLAQILSEQIVLALANLQLQEKLQTQSSPDPLSLL
>NC_011729.1|WP_015954376.1|2619692_2620166_-|response-regulator
MALNFIPSLLIIEDSDEDYMAFMRITKKLSLSYPVFRYPSADEALDALRGISEEPEPLLQPSRQPSIILLDLNLPGMDGRELLEILQHDDILKKIPVVVFTTSSNPRDIDYCYQKGVKSYIVKPINVDQLKNTIKTFWEYWFEVVILPSFSESYFHL
>NC_011729.1|WP_015954377.1|2620175_2622458_-|GAF-domain-containing-protein
MNESTDLSTYIIQCEEEAIHTPGCIQPHGFLIVLKEPDLQIIQLSKNVDRYLGIDAEDLLNQNLNVILEETQIEQIKTLLESESLLDFNPINIQLVRDQKKLEFSGYLHRNYQGLILELESVFSQPASSLRDFYKTTQAAISKLKTGLNYRKLCQIAAEEIRKISQFDRIMIYRFNQDWHGEVIAEDKIEEIDSYLGLHFPSADIPPLARNLFELQPLRFIPDVNHKTVELIPLNNPLTDQPLDLSYSLLRGVSPIHLEYLQNMGIRGSMTLSLLKNNQLWGLVACHHKSPKFVSQSVRSACEIFIKVLSMTLSDTQDNEDYKYQIELKSIQSKLIEYMSQENDFVDGLVDHDPNILNLFQSQGSAIYNAGHFYLLGITPNEEEIYQLIQWLDSNFSDHIFSTENLSKVYPQAEQYQDIASGILAICLSKSSQRYIIWFRPEVEQTINWAGEPHQLVQLDRDFILHPRQSFQLWKEEVKGKSLPWKTTELNAALNLRNSILEVGLWKANDLMLLNAELERSNQDLDAFAYIASHDLKEPLRGIHNYANFILEDYGEQLEREAVEQLQSITRLTQRMDHLLDSLLHFSRVGRTELSIRKLDLNKLIAETLEMLQSRLERENVQVLIPRPLPTIEGDAIRIGEVYSNLISNAIKYNNKANKWIEIGYIDSTEPFPKSWQPSPDQSNHPSLIFYVKDNGIGIREKHLEAIFQIFKRLHGKDQYGGGTGIGLTIAKKIIERHGGKIWIESTYEQGSTFYFTLSR
>NC_011729.1|WP_015954378.1|2622851_2623553_-|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MSKLILIRHGQSLWNAANKFTGWVDIPLSRRGRAEAMIAASKLQEQGYRIDVCFTSLLIRAMETAIIALTEYEQLCGGKTPIFKHDADDLDWHGWDKYDGDPKEELPIFPSQALDERYYGDLQGLNKAQTAQKYGSEQVHEWRRSYFTRPPGGESLEDTQKRVIPYFENRILTHIAHGDTVMVAAHGNSLRAMIMRLENLQPEDVPNLELATGIPLIYEVDQQAKVSNKIVLH
>NC_011729.1|WP_015954379.1|2623691_2625122_-|pyruvate-kinase
MKLLTHRTKIVATIGPASSSPEILKQMIDAGMNVARLNFSHGSYEDHARMVSLLRSVSEELNYPITLLQDLQGPKIRIGQLPDGQMMLNEGEYLTLVPVAEFDNQPYTVSIDYPYIAQDAKIGEQVLLDDGLLELKVEDIQGNAVKCKIIEGGILKSRKGVNFPNLDLRLPSMTAKDEKDLEFGLSQGIDWVSLSFVRKAEDIRYLKNFLTEKGQPDVPVIAKIEKPQAIEHLEEIVAECDGLMVARGDLGVEMSPEKVPLLQKQIIRLCNLQHRPVITATQMLESMIHNPRPTRAEASDVANAIIDGTDAVMLSGESAVGEFPVKAVEMLSRIAQYVERDIEFVNNPPSDNDETHALSEALNAIDKTLDLRYIVTFTSTGYTAILASKERPSVPVIAITPDKKVYHRLNLVWGVIPLLIEQEVETFEELLKQVETTLIDQKLAEIKDKVLIMAGIPTQHPRGTNFLKIHTIGEYH
>NC_011729.1|WP_015954380.1|2625437_2626526_+|chorismate-synthase
MGNIFGHLFRITTFGESHGGGVGVVIDGCPPRIEISETEIQLELDRRRPGQSKITTPRQESDTCEIISGVFEGKTLGTSIAILVRNKDARSQDYDEMALKYRPSHADATYDAKYGIRNWKGGGRSSARETIGRVAAGAIAKKILQQVAGVEIVAYVKRIKDLEAIINPETVTLEEVESNIVRCPDQDAAQKMIDLIDQTRREKDSIGGVVECVMRNVPKGLGEPVFDKLEADLAKGMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYTDEAGNIRTVTNLSGGIQGGISNGENIIIRVAFKPTATIGKEQQTVTQTGEETTLAAKGRHDPCVLPRAVPMVEAMAALVLCDHLLRHHGQCKTV

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Crispr_ID: NC_011729_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_19

2726175-2729811

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCATGCTTGTGGGGGTGAACCG	PILER-CR
GTATTCCCCATGCTTGTGGGGGTGAACCG	CRISPRCasFinder
GTATTCCCCATGCTTGTGGGGGTGAACCG	CRT

59 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DinG

The CRISPR arrays of NC_011729_19

>merge|NC_011729|19|2726175-2729811|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCATGCTTGTGGGGGTGAACCGTCAGTTAGAAGGATTTTTCCTTTGTGTACAAGGTATTCCCCATGCTTGTGGGGGTGAACCGATTTTTTGAATTTTGGATAGGCGTACCGTTAGGTATTCCCCATGCTTGTGGGGGTGAACCGTTCTCTTTGTAATCTGTGTCCAGTCATCCCATAGTATTCCCCATGCTTGTGGGGGTGAACCGATAAACGAACTACAGGTCGATTCCATATTAAAGTATTCCCCATGCTTGTGGGGGTGAACCGGAAACAAGTACAATGGTACAAAAAGAAACAGAGTATTCCCCATGCTTGTGGGGGTGAACCGGCATCGGCTCTTTTGCAGTCTTCCCAGACCGCCGTATTCCCCATGCTTGTGGGGGTGAACCGAACTGAGTAAAACTTTTTCCTCTAAGCTAACCGTATTCCCCATGCTTGTGGGGGTGAACCGTCGTCCTTTTTTGGAGTCCTTGGGGGCGACTGGTATTCCCCATGCTTGTGGGGGTGAACCGATCGATTTCATCGCGTCTTATATGGAGGATAGGTATTCCCCATGCTTGTGGGGGTGAACCGGCGGCCTATGGCGGGAAGCTGCGCCTCGAGTCGTATTCCCCATGCTTGTGGGGGTGAACCGACAAAAAAGGACAAATCACGAAAAGTAAGTCCGTATTCCCCATGCTTGTGGGGGTGAACCGGATTTTCGCCTACTCGTCCCTCTCAAGGCTTCGTATTCCCCATGCTTGTGGGGGTGAACCGGATACCCTCAAGAGTTTTCGCCATCGTCTCTAGTATTCCCCATGCTTGTGGGGGTGAACCGGAGAGTAAGGAGAGTCTGGATCTGGATAAAAACGTATTCCCCATGCTTGTGGGGGTGAACCGACTTTTTGCCCAATTTGCTCTCAAAGAATGCGCGTATTCCCCATGCTTGTGGGGGTGAACCGTTACCTAAATCAAACAAATCGATTCGTACTTAGTATTCCCCATGCTTGTGGGGGTGAACCGTTACCCGGTGGGGGAAATTGGTTCTTCATTCCGTATTCCCCATGCTTGTGGGGGTGAACCGAATGACGATTTGCCGATGTCTCAAGCCGAGAAGTATTCCCCATGCTTGTGGGGGTGAACCGTTAACTATTTTTTTGATTTGAGGAGAAAAAAAGTATTCCCCATGCTTGTGGGGGTGAACCGATTATCGCTCCTGCGTTCAAGGAAAAATTTAAGTATTCCCCATGCTTGTGGGGGTGAACCGAGATCGAAAGCACGATCGCTCAACTGCAACTTCGTATTCCCCATGCTTGTGGGGGTGAACCGTTAAAGCTTGATGATAAGCTTGAGATCCAGTGGTATTCCCCATGCTTGTGGGGGTGAACCGCTAATCTACGGGATAAACGAGATAAGAAAAACGTATTCCCCATGCTTGTGGGGGTGAACCGCTTGTCCATTAGCCAACTCTTTAAGCCACTTAGTATTCCCCATGCTTGTGGGGGTGAACCGTAAAGAGGATATGAAAAAACGCAACTTAGAATGTATTCCCCATGCTTGTGGGGGTGAACCGAATGAGGCACTTTATAAGCCAGTGTTGTCATGGTATTCCCCATGCTTGTGGGGGTGAACCGAACAAGAATCGATATTAGAGAATTTACAATACGTATTCCCCATGCTTGTGGGGGTGAACCGAAGAAACTCTACAGATACAACAAGCCAAAACAGTATTCCCCATGCTTGTGGGGGTGAACCAGATACGACGTTATCTTTATCAATTTCCCATACGTATTCCCCATGCTTGTGGGGGTGAACCGTTGCCCAAATGCGTTTAAATTAATTCCTCATAGTATTCCCCATGCTTGTGGGGGTGAACCGGTCTAGTTTTTCGTCAATGTAGAGGTTTGTCGTATTCCCCATGCTTGTGGGGGTGAACCGAAAAAATTGAGGTCTTCATAAGGTTAAAAAAAAGTATTCCCCATGCTTGTGGGGGTGAACCGCAATTTAATTTCGCTATCACCTCAATTACAAGGTATTCCCCATGCTTGTGGGGGTGAACCGTTATCAGATACAATCGGATGATGACAGTATAGGTATTCCCCATGCTTGTGGGGGTGAACCGGAGACAATCACCAATGCCCTCGCTAGGATTTTGTATTCCCCATGCTTGTGGGGGTGAACCGAAGGATATAATTTTCAACTCTACACCTATAACGTATTCCCCATGCTTGTGGGGGTGAACCGATGACCCCATGCGATCGCCCTTGCCCGATCGCGTATTCCCCATGCTTGTGGGGGTGAACCGACTTGATGATTTTTGCTCAATACCTGTCTTTAGTATTCCCCATGCTTGTGGGGGTGAACCGAGGAAATGAAACTTGCTGAAGAGCTTTTTAAAGTATTCCCCATGCTTGTGGGGGTGAACCGATGGGTTTTTAGGATCGTCCCACCCATCCCAAGTATTCCCCATGCTTGTGGGGGTGAACCGTTTGCCCGACTTAAAAATATTGAATAGCCCTCGTATTCCCCATGCTTGTGGGGGTGAACCGGTGGATTTGGTTAGGGAAAATAAAAGGGGTCTGTATTCCCCATGCTTGTGGGGGTGAACCGTTTGGATCAATACGAGTTTAGGGGAAACTTTTGTATTCCCCATGCTTGTGGGGGTGAACCGGACTACACATGGATGCACAAACATTCATTGTTCGTATTCCCCATGCTTGTGGGGGTGAACCGAAGTAAACCTAAAGAGGGCGAGAAAAAACAAGAGGTATTCCCCATGCTTGTGGGGGTGAACCGATGTTTAGTTCGTGTAAATCAATTGTTTTTCGCGTATTCCCCATGCTTGTGGGGGTGAACCGCAATGGAACGGCAGCGAGTGGGTAGAGGTTGCGTATTCCCCATGCTTGTGGGGGTGAACCGAAACATTCCCAATCCCTAGACTAGAAAATGAAGTATTCCCCATGCTTGTGGGGGTGAACCGAGTTGGGATATACCGACGAGCAAATAGGGGACGTATTCCCCATGCTTGTGGGGGTGAACCGTTAGTTTTTCCTTTTTCTATGACTGATTGGTGGTATTCCCCATGCTTGTGGGGGTGAACCGGTTGAAGTTGAGGAGTGGTTGAGTCAAGTCCAGTATTCCCCATGCTTGTGGGGGTGAACCTAAGAATGGGACCACTCATTACCATCAGTCAAAGTATTCCCCATGCTTGTGGGGGTGAACCGGAGTGGCATAAAAATTTTTTTGGGTTGTTTCAGTATTCCCCATGCTTGTGGGGGTGAACCGATCGAAAATGCGATCGCAATCAAGGAAAAATGGTATTCCCCATGCTTGTGGGGGTGAACCGCAATAGATCGGGTTTTCCTATTTTTTTTATCCGTATTCCCCATGCTTGTGGGGGTGAACCGATCGAGATGCAAAGCTTCCCTCGGCGACGGGCGTATTCCCCATGCTTGTGGGGGTGAACCGATAAAGACGCGATCGCTCTCATTCAATCTGAAGTATTCCCCATGCTTGTGGGGGTGAACCGATAGTTGTCGCTTCCTGCTTATACAGCTTCCAGTATTCCCCATGCTTGTGGGGGTGAACCGAATACCTGCTCTTTATCGACGTACCACTTATAGTATTCCCCATGCTTGTGGGGGTGAACCG

>NC_011729|19|8|2726175-2729811|PILER-CR
GTATTCCCCATGCTTGTGGGGGTGAACCG	TCAGTTAGAAGGATTTTTCCTTTGTGTACAAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATTTTTTGAATTTTGGATAGGCGTACCGTTAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTCTCTTTGTAATCTGTGTCCAGTCATCCCATA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAAACGAACTACAGGTCGATTCCATATTAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAAACAAGTACAATGGTACAAAAAGAAACAGA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GCATCGGCTCTTTTGCAGTCTTCCCAGACCGCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AACTGAGTAAAACTTTTTCCTCTAAGCTAACC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TCGTCCTTTTTTGGAGTCCTTGGGGGCGACTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGATTTCATCGCGTCTTATATGGAGGATAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GCGGCCTATGGCGGGAAGCTGCGCCTCGAGTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACAAAAAAGGACAAATCACGAAAAGTAAGTCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GATTTTCGCCTACTCGTCCCTCTCAAGGCTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GATACCCTCAAGAGTTTTCGCCATCGTCTCTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGAGTAAGGAGAGTCTGGATCTGGATAAAAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACTTTTTGCCCAATTTGCTCTCAAAGAATGCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTACCTAAATCAAACAAATCGATTCGTACTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTACCCGGTGGGGGAAATTGGTTCTTCATTCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATGACGATTTGCCGATGTCTCAAGCCGAGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAACTATTTTTTTGATTTGAGGAGAAAAAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATTATCGCTCCTGCGTTCAAGGAAAAATTTAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGATCGAAAGCACGATCGCTCAACTGCAACTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAAAGCTTGATGATAAGCTTGAGATCCAGTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	CTAATCTACGGGATAAACGAGATAAGAAAAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	CTTGTCCATTAGCCAACTCTTTAAGCCACTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TAAAGAGGATATGAAAAAACGCAACTTAGAAT
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATGAGGCACTTTATAAGCCAGTGTTGTCATG
GTATTCCCCATGCTTGTGGGGGTGAACCG	AACAAGAATCGATATTAGAGAATTTACAATAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGAAACTCTACAGATACAACAAGCCAAAACA
GTATTCCCCATGCTTGTGGGGGTGAACCA	GATACGACGTTATCTTTATCAATTTCCCATAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTGCCCAAATGCGTTTAAATTAATTCCTCATA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTCTAGTTTTTCGTCAATGTAGAGGTTTGTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAAAAATTGAGGTCTTCATAAGGTTAAAAAAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATTTAATTTCGCTATCACCTCAATTACAAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTATCAGATACAATCGGATGATGACAGTATAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGACAATCACCAATGCCCTCGCTAGGATTTT
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGGATATAATTTTCAACTCTACACCTATAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGACCCCATGCGATCGCCCTTGCCCGATCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACTTGATGATTTTTGCTCAATACCTGTCTTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGGAAATGAAACTTGCTGAAGAGCTTTTTAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGGGTTTTTAGGATCGTCCCACCCATCCCAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTTGCCCGACTTAAAAATATTGAATAGCCCTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTGGATTTGGTTAGGGAAAATAAAAGGGGTCT
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTTGGATCAATACGAGTTTAGGGGAAACTTTT
GTATTCCCCATGCTTGTGGGGGTGAACCG	GACTACACATGGATGCACAAACATTCATTGTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGTAAACCTAAAGAGGGCGAGAAAAAACAAGAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGTTTAGTTCGTGTAAATCAATTGTTTTTCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATGGAACGGCAGCGAGTGGGTAGAGGTTGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAACATTCCCAATCCCTAGACTAGAAAATGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGTTGGGATATACCGACGAGCAAATAGGGGAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAGTTTTTCCTTTTTCTATGACTGATTGGTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTTGAAGTTGAGGAGTGGTTGAGTCAAGTCCA
GTATTCCCCATGCTTGTGGGGGTGAACCT	AAGAATGGGACCACTCATTACCATCAGTCAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGTGGCATAAAAATTTTTTTGGGTTGTTTCA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGAAAATGCGATCGCAATCAAGGAAAAATG
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATAGATCGGGTTTTCCTATTTTTTTTATCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGAGATGCAAAGCTTCCCTCGGCGACGGGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAAAGACGCGATCGCTCTCATTCAATCTGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAGTTGTCGCTTCCTGCTTATACAGCTTCCA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATACCTGCTCTTTATCGACGTACCACTTATA
GTATTCCCCATGCTTGTGGGGGTGAACCG

>NC_011729|19|17|2726175-2729811|CRISPRCasFinder
GTATTCCCCATGCTTGTGGGGGTGAACCG	TCAGTTAGAAGGATTTTTCCTTTGTGTACAAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATTTTTTGAATTTTGGATAGGCGTACCGTTAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTCTCTTTGTAATCTGTGTCCAGTCATCCCATA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAAACGAACTACAGGTCGATTCCATATTAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAAACAAGTACAATGGTACAAAAAGAAACAGA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GCATCGGCTCTTTTGCAGTCTTCCCAGACCGCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AACTGAGTAAAACTTTTTCCTCTAAGCTAACC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TCGTCCTTTTTTGGAGTCCTTGGGGGCGACTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGATTTCATCGCGTCTTATATGGAGGATAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GCGGCCTATGGCGGGAAGCTGCGCCTCGAGTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACAAAAAAGGACAAATCACGAAAAGTAAGTCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GATTTTCGCCTACTCGTCCCTCTCAAGGCTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GATACCCTCAAGAGTTTTCGCCATCGTCTCTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGAGTAAGGAGAGTCTGGATCTGGATAAAAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACTTTTTGCCCAATTTGCTCTCAAAGAATGCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTACCTAAATCAAACAAATCGATTCGTACTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTACCCGGTGGGGGAAATTGGTTCTTCATTCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATGACGATTTGCCGATGTCTCAAGCCGAGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAACTATTTTTTTGATTTGAGGAGAAAAAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATTATCGCTCCTGCGTTCAAGGAAAAATTTAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGATCGAAAGCACGATCGCTCAACTGCAACTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAAAGCTTGATGATAAGCTTGAGATCCAGTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	CTAATCTACGGGATAAACGAGATAAGAAAAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	CTTGTCCATTAGCCAACTCTTTAAGCCACTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TAAAGAGGATATGAAAAAACGCAACTTAGAAT
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATGAGGCACTTTATAAGCCAGTGTTGTCATG
GTATTCCCCATGCTTGTGGGGGTGAACCG	AACAAGAATCGATATTAGAGAATTTACAATAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGAAACTCTACAGATACAACAAGCCAAAACA
GTATTCCCCATGCTTGTGGGGGTGAACCA	GATACGACGTTATCTTTATCAATTTCCCATAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTGCCCAAATGCGTTTAAATTAATTCCTCATA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTCTAGTTTTTCGTCAATGTAGAGGTTTGTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAAAAATTGAGGTCTTCATAAGGTTAAAAAAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATTTAATTTCGCTATCACCTCAATTACAAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTATCAGATACAATCGGATGATGACAGTATAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGACAATCACCAATGCCCTCGCTAGGATTTT
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGGATATAATTTTCAACTCTACACCTATAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGACCCCATGCGATCGCCCTTGCCCGATCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACTTGATGATTTTTGCTCAATACCTGTCTTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGGAAATGAAACTTGCTGAAGAGCTTTTTAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGGGTTTTTAGGATCGTCCCACCCATCCCAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTTGCCCGACTTAAAAATATTGAATAGCCCTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTGGATTTGGTTAGGGAAAATAAAAGGGGTCT
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTTGGATCAATACGAGTTTAGGGGAAACTTTT
GTATTCCCCATGCTTGTGGGGGTGAACCG	GACTACACATGGATGCACAAACATTCATTGTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGTAAACCTAAAGAGGGCGAGAAAAAACAAGAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGTTTAGTTCGTGTAAATCAATTGTTTTTCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATGGAACGGCAGCGAGTGGGTAGAGGTTGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAACATTCCCAATCCCTAGACTAGAAAATGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGTTGGGATATACCGACGAGCAAATAGGGGAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAGTTTTTCCTTTTTCTATGACTGATTGGTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTTGAAGTTGAGGAGTGGTTGAGTCAAGTCCA
GTATTCCCCATGCTTGTGGGGGTGAACCT	AAGAATGGGACCACTCATTACCATCAGTCAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGTGGCATAAAAATTTTTTTGGGTTGTTTCA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGAAAATGCGATCGCAATCAAGGAAAAATG
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATAGATCGGGTTTTCCTATTTTTTTTATCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGAGATGCAAAGCTTCCCTCGGCGACGGGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAAAGACGCGATCGCTCTCATTCAATCTGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAGTTGTCGCTTCCTGCTTATACAGCTTCCA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATACCTGCTCTTTATCGACGTACCACTTATA
GTATTCCCCATGCTTGTGGGGGTGAACCG

>NC_011729|19|5|2726175-2729811|CRT
GTATTCCCCATGCTTGTGGGGGTGAACCG	TCAGTTAGAAGGATTTTTCCTTTGTGTACAAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATTTTTTGAATTTTGGATAGGCGTACCGTTAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTCTCTTTGTAATCTGTGTCCAGTCATCCCATA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAAACGAACTACAGGTCGATTCCATATTAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAAACAAGTACAATGGTACAAAAAGAAACAGA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GCATCGGCTCTTTTGCAGTCTTCCCAGACCGCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AACTGAGTAAAACTTTTTCCTCTAAGCTAACC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TCGTCCTTTTTTGGAGTCCTTGGGGGCGACTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGATTTCATCGCGTCTTATATGGAGGATAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GCGGCCTATGGCGGGAAGCTGCGCCTCGAGTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACAAAAAAGGACAAATCACGAAAAGTAAGTCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GATTTTCGCCTACTCGTCCCTCTCAAGGCTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GATACCCTCAAGAGTTTTCGCCATCGTCTCTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGAGTAAGGAGAGTCTGGATCTGGATAAAAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACTTTTTGCCCAATTTGCTCTCAAAGAATGCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTACCTAAATCAAACAAATCGATTCGTACTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTACCCGGTGGGGGAAATTGGTTCTTCATTCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATGACGATTTGCCGATGTCTCAAGCCGAGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAACTATTTTTTTGATTTGAGGAGAAAAAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATTATCGCTCCTGCGTTCAAGGAAAAATTTAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGATCGAAAGCACGATCGCTCAACTGCAACTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAAAGCTTGATGATAAGCTTGAGATCCAGTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	CTAATCTACGGGATAAACGAGATAAGAAAAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	CTTGTCCATTAGCCAACTCTTTAAGCCACTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TAAAGAGGATATGAAAAAACGCAACTTAGAAT
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATGAGGCACTTTATAAGCCAGTGTTGTCATG
GTATTCCCCATGCTTGTGGGGGTGAACCG	AACAAGAATCGATATTAGAGAATTTACAATAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGAAACTCTACAGATACAACAAGCCAAAACA
GTATTCCCCATGCTTGTGGGGGTGAACCA	GATACGACGTTATCTTTATCAATTTCCCATAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTGCCCAAATGCGTTTAAATTAATTCCTCATA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTCTAGTTTTTCGTCAATGTAGAGGTTTGTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAAAAATTGAGGTCTTCATAAGGTTAAAAAAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATTTAATTTCGCTATCACCTCAATTACAAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTATCAGATACAATCGGATGATGACAGTATAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGACAATCACCAATGCCCTCGCTAGGATTTT
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGGATATAATTTTCAACTCTACACCTATAAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGACCCCATGCGATCGCCCTTGCCCGATCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ACTTGATGATTTTTGCTCAATACCTGTCTTTA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGGAAATGAAACTTGCTGAAGAGCTTTTTAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGGGTTTTTAGGATCGTCCCACCCATCCCAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTTGCCCGACTTAAAAATATTGAATAGCCCTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTGGATTTGGTTAGGGAAAATAAAAGGGGTCT
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTTGGATCAATACGAGTTTAGGGGAAACTTTT
GTATTCCCCATGCTTGTGGGGGTGAACCG	GACTACACATGGATGCACAAACATTCATTGTTC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAGTAAACCTAAAGAGGGCGAGAAAAAACAAGAG
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATGTTTAGTTCGTGTAAATCAATTGTTTTTCGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATGGAACGGCAGCGAGTGGGTAGAGGTTGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	AAACATTCCCAATCCCTAGACTAGAAAATGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AGTTGGGATATACCGACGAGCAAATAGGGGAC
GTATTCCCCATGCTTGTGGGGGTGAACCG	TTAGTTTTTCCTTTTTCTATGACTGATTGGTG
GTATTCCCCATGCTTGTGGGGGTGAACCG	GTTGAAGTTGAGGAGTGGTTGAGTCAAGTCCA
GTATTCCCCATGCTTGTGGGGGTGAACCT	AAGAATGGGACCACTCATTACCATCAGTCAAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	GAGTGGCATAAAAATTTTTTTGGGTTGTTTCA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGAAAATGCGATCGCAATCAAGGAAAAATG
GTATTCCCCATGCTTGTGGGGGTGAACCG	CAATAGATCGGGTTTTCCTATTTTTTTTATCC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATCGAGATGCAAAGCTTCCCTCGGCGACGGGC
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAAAGACGCGATCGCTCTCATTCAATCTGAA
GTATTCCCCATGCTTGTGGGGGTGAACCG	ATAGTTGTCGCTTCCTGCTTATACAGCTTCCA
GTATTCCCCATGCTTGTGGGGGTGAACCG	AATACCTGCTCTTTATCGACGTACCACTTATA
GTATTCCCCATGCTTGTGGGGGTGAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954477.1\|2734132_2734366_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954478.1\|2734368_2734821_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350261
NC_011729.1\|WP_083775336.1\|2730680_2730857_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370136
NC_011729.1\|WP_041237720.1\|2723568_2724213_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_011729.1\|WP_015954464.1\|2721590_2722106_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_011729.1\|WP_015954465.1\|2722126_2723569_+\|CRISPR-associated-protein,-Cse4-family	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_011729.1\|WP_015954463.1\|2720016_2721594_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NC_011729.1\|WP_015954476.1\|2733300_2733570_+\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_011729.1\|WP_015954471.1\|2731254_2731632_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954475.1\|2732984_2733314_+\|DNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|224583
NC_011729.1\|WP_041237721.1\|2729835_2730450_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99825
NC_011729.1\|WP_015954467.1\|2724199_2724859_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
NC_011729.1\|WP_015954468.1\|2724965_2725877_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011729.1\|WP_015954472.1\|2731628_2732060_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NC_011729.1\|WP_015954469.1\|2725882_2726161_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_011729.1\|WP_015954462.1\|2717260_2719987_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_011729.1\|WP_015954474.1\|2732708_2732921_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954460.1\|2713321_2715826_+\|DEAD/DEAH-box-helicase-family-protein	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_011729.1\|WP_015954461.1\|2716274_2717246_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_011729.1\|WP_015954470.1\|2730993_2731155_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954478.1\|2734368_2734821_+\|hypothetical-protein	gnl\|CDD\|350261	cd18694, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_24.	3.03825e-73
NC_011729.1\|WP_083775336.1\|2730680_2730857_-\|hypothetical-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	7.47276e-31
NC_011729.1\|WP_041237720.1\|2723568_2724213_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.07981e-45
NC_011729.1\|WP_015954464.1\|2721590_2722106_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	3.26591e-30
NC_011729.1\|WP_015954465.1\|2722126_2723569_+\|CRISPR-associated-protein,-Cse4-family	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.44149e-51
NC_011729.1\|WP_015954463.1\|2720016_2721594_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	2.09287e-95
NC_011729.1\|WP_015954476.1\|2733300_2733570_+\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	7.7816e-22
NC_011729.1\|WP_015954475.1\|2732984_2733314_+\|DNA-polymerase-subunit-beta	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	1.92142e-17
NC_011729.1\|WP_041237721.1\|2729835_2730450_-\|hypothetical-protein	gnl\|CDD\|99825	cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.	0.00300624
NC_011729.1\|WP_015954467.1\|2724199_2724859_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.74864e-58
NC_011729.1\|WP_015954468.1\|2724965_2725877_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.61755e-134
NC_011729.1\|WP_015954472.1\|2731628_2732060_+\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	7.33795e-11
NC_011729.1\|WP_015954469.1\|2725882_2726161_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.05868e-40
NC_011729.1\|WP_015954462.1\|2717260_2719987_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	9.58728e-88
NC_011729.1\|WP_015954460.1\|2713321_2715826_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	1.71946e-12
NC_011729.1\|WP_015954461.1\|2716274_2717246_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	8.99221e-48

>NC_011729.1|WP_015954469.1|2725882_2726161_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MVVFVVENVANSLRGELSRWLFEVKAGVFTGKVSALVRDELWQYIADKVGTGSALMIYSTNNEQGFSAKVIGNRTRTLEDIEGLLLVKITSD
>NC_011729.1|WP_015954468.1|2724965_2725877_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTNLRTIPKTRDSISFLYFDRCKVEQEAKGIAIFQKKEKYVIPCANLSTLLLGPGSHITHAAMKTLADNACEVQWVGEDSFRFYSSGRHSSNSVQRLYHQAKMWADPQQHLAVVRKMYQFRFCEPLSEDLTLQQIRGLEGVRVRTVYQRMSKATGIEWKGRNYKHDSWYDADPINRALSSANSYLYAVCQVALVSVGYSPALGFIHTGKPLSFVYDIADLYKADTTIPAAFEAIAEVGEDKKTTVRQKCREKFSKFRLMKRIIDDIDQVIGYSQGEAEIPQVTHLWDDQIEWVEGGQDWQQEV
>NC_011729.1|WP_015954467.1|2724199_2724859_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKIELNIRSSAVSTDLSDCHKLHQRVMQGFPNENNPEYRSEAKILYRLEGSILFVQSKNKPDWTQLPKGYTAEEITEMDYEKIKKGDYLYFRLLGNPVQQTTKLRTDDSGNIIMKNNSEKPQKKTVRRFLSNKDAQIQWLMNHLKGTILQECYVSASSDIRGQCKQSKRIFLKTVLFDGVLQVTDSESFIKALREGIGRGRSYGCGLLSIAKFNPN
>NC_011729.1|WP_041237720.1|2723568_2724213_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLLLRLAGPLQSWGRGSRFDFRDTDTIPTKSGVIGLVAAAMGINRDNQVELAKLAQLRMGVCVEKEGKLVVDYHTVIGTIHADGKPHKAPIQSYRQYLCNAEFLVGLESSEYHLLNEIEHYLCFPKWELFLGRKACPPSKPIFVDLLTNSLEDALYQYAISHLKKGTYRLLIESKEPTGALRLDVPIDFKKRIFSARTVITPKPLEVSDVSE
>NC_011729.1|WP_015954465.1|2722126_2723569_+|CRISPR-associated-protein,-Cse4-family
MTNFLEIHLLQSTPPSNMNRDQNGSPKTAHFGGVERLRVSSQSWKHAVRQYYKKTLPDDHKTYRDKGWPTELAKRLKQEKFDEELNLKDSDFSVVLPIAFMLLSAIGAKRDDKKEGDIDTMLFLGEAEVREIINCAKKYQQILVKVAQNPPKKGGEPKKGKGKGKAKASSDDDTSTPEETESTITILELPGAIQGDLKTSYKDNPLAKVVNEEEFNQLKKLCNEIKGILYDEKNKRIKPVPGDVALFGRMLASFSDASVDASVSVAHAISTNSIKREFDYWTAARDFQKNNSDESQGAGHIGDRPFASGVFYRYSCLDSNQLSENLGEIYQEDIQYLVEQYLDAFLHSRPSGYSHQFGHDTLPFAGIFVIRQSQPISLVNAFDIPIKKYDSFCRQSWNKLVDHWNEIQQAYGKRLPVKEVHVFSLESFKDISELVKAVPNKNSNSENTIVCYHQDFSEAIEETAEALVKYLNQEEGRDKK
>NC_011729.1|WP_015954464.1|2721590_2722106_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTTTEISKERAFINAVWQRIEGNRGAIATVSRCTDSDPYYQRQAATYIYPYLPDDIRQWQKKINRYVFVAALMAKNHQQNPKDAQIGSSFGHTCLRLKKHANVNANGIENRFQALLNANGEDVYRYLGMFAPLLRQHNIPCEWAKLLEDLNCWDHEEEKVRLRWARDFYQD
>NC_011729.1|WP_015954463.1|2720016_2721594_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MMTQTLTSPPKPQTTYSLLTEPWIPVVYNDSLKYKNISLQDLFLEWENLKTVQGINPPRTIALWRWLIAFTQWSIQGTKTIDEWKQLWTDENLGSRIIKRLETVKERLDLLHPDFPFGQCKDLREETKGKEPSPVSKILFQDKDSGLLWSKYSDQNPAFLSYAEAVQELLRLLCCDLGGTKSDSQDRSAQTGICVMGRIVMPIGKNVKETLLLNLHQYSPQDDIPSIFPDQDKDLPLWERLNIKKQSRTITGLLDYLTFPNRRVMLIHNGKSVTGVYLYKGEEFNQKDSYFWELWQAYIQVKDESMPLKLKLDINKASWRDAEALLHPTTQDNHKPKIFDWLVKCRHTGCVPDPIPVQVLGFAHGSDLGKPLHWLHDTMTIPQVYLDSKEAYYKLVEGLKYAEKIGRLFSSKTYETVANGLKLSKKDKQKFINQLSTTAAIYWSALDSEFQQFMFELAEDKVVDEEDEDDITFGEIKIPEWKNKLKTIATECYEQSIAGISSYEARARGLNAWYKELNKILRNKP
>NC_011729.1|WP_015954462.1|2717260_2719987_+|CRISPR-associated-helicase/endonuclease-Cas3
MMDSLLLWAKLDKKNSEIYHPPLFHLIDTATVTKALLTKGLSPYLVSRLSESLEINHESLLQFAPFLSGSHDLGKIAPDFQFQNDQGSEIAKKLMGESSYSLWQKNRERNKILHGTITAVTLPEYLENFGLDSIIAEELAVITGGHHGIFPHPNDIKNAKYSKSNIGKKHWIKLRKETVDELVKYTKIEKKDFPTKLTPASKIILAGLITLSDWIASNQAWFRPCSNKPLEEYVKTIDEKVDKALRESGWIGWESHDSTLPSKKLFNYIKEFEPRHLQEEIEKKMPELQDKPFLLIIEGPTGEGKTEGSIIVAEWCGVSGGIARGAYFALPTQATSNELYKRISQYLRNRYPLQKVPFHLVHSNAQLSDTFSETIICRLDQVYDEDKHPPGVIANEWFTYRKRPLLSPWGTGTIDQALMGILRSKHNFVRLFGLAGKTVILDEIHAYDAYTSTLIEWLLEWLAALGSPVVAMSATLSQKQRETFVAAYSRGFGESAPILNQCPYPRLTICSPKIEQNKVISFNISKLNASRKIRFEWIDEAQIPQILENSLKQGGTAAILRTQIAWAQQTYQDLIPSTFSKDERILLHSRFLHIDRKQQEKRCLAVYGKEVDKTKVRPRSACAATQIIEQSLDLDFDLMISDLAPIDLLLQRIGRIWRHDRVRPTGITEPLLYLIRPKFKDDLPDFDFIVEKFIYERHLLLRTWDVLNSLDGYLEPFKFIDSKTRQIDYLIEQVYDFSHPPLASLNSATQDDWNSSQAKLESQIISEQRLARNRNLPHVNQQPEAWELTHRPENADLVTRLTPRTVTVVLAQETARGLILPRSRSKRQIHPNRKPTKEEVKDILDHSVNLTKRGLVDQLEALPTESGWIQNTLLRNVKLLRLQNGYYSEIPNWQISLNDELGVITTQI
>NC_011729.1|WP_015954461.1|2716274_2717246_+|WYL-domain-containing-protein
MSHRLERLLKIDQLLRSSQRITQGILAQHLEVKERTVRDDLHFLRDRYHAPLEFNKQKGWFYTDSNWRLPSISLSQGELFALTLGARMLEAYAGSAYEKELRSSIEQLSKRLPEKSWVNLQQLADERIIFRSGAEMLNLNSEIFQQLVEAFNTSRRVWIHYYAATRNEESERVVDPYFLDIYRGSNPYLIGFCHKRQAIRDFRIDRIKKLRLLDEKFQRDPNFDAKAYLEKRFQHEGGEKLFSVAIWFDKLSAPFIRERRWHVTQEITEHPDTSLTLHLVTAGLNDLKRWVLGYGKGAKVLEPPELVTLVIDEIQQMSKIYQI
>NC_011729.1|WP_015954460.1|2713321_2715826_+|DEAD/DEAH-box-helicase-family-protein
MSFDFNKFLTSTSAKRHVDPVDLFQSLKVIDPKVNDLWLAQGDALRLWHAIRDHEDVAIVLNTGAGKTMIGVITAQSLVNETNDHVLYVCSSIQLVEQTAKKAEGYGLKVTTYYRSDFSNTLYQRGQAPCVTTYHALLNGKSRFLQDLPSAIIFDDAHTVEHLLRDAFSIKIRRETFPKAFSQIVELFRRYYRLIRSGVGYEETKKQRNGNNYWFVPPFALYEQYHELERILLDADLDEELETLFSWEHLKNYLDICALFISGQEIVLTPPVIPVSTIPYFQKGIRRLYLSATLTAGDKFMRTFGRVPEIVTPKTTAGECERLILIPSMHSDCLDDVAIAKSIIREQKALILVPSYRREAIWSDVLTMREKDNITEKIETFKTAETPEKMSLVSRYDGIDFPDKDCRVMVIDDLPSSLNPLEKFFWEKLGLAKYLRSAISSRIIQAFGRISRGMSDYGVVIITSQKLRDWLLEPKNRATLPLFLVQQLELGMNISEDTHPSELEKLASRCLKRNPDWLNLYNKQIQKSNSDVESTTDPQALRISQTEFEFGQALWRRDYEGAARCLSQSLEETFEASANTAAWHLLWLGYCFERLGQKKEAYEAYQRAHNIAHNIPPLHLQDWSNLTPELPNQVLEVARYLYSDPLVMQQSVPKTFDLDLAVLDGTGSPDQIEESLRLLGQYLGLMSTRPEKEFGTGPDVFWDGGVGTALCLEVKSDKQSRSSYIKKDLGQLRDHQQWVRNHSEAKTIYTAFVGLLLPPSLSSNPDPDMDVIELKEFKAIAQRLRAALEDICTQALPSTLPQKIFEVFKQRDLLWPELYRNMEKSKLQELGEKH
>NC_011729.1|WP_041237721.1|2729835_2730450_-|hypothetical-protein
MNKIIIYDCEIIKCLPSLQKKLEPNFMYCQGWNDFCNMGISVIAFQVLEDLQDVNNRFYYFTNPNNLIPYTFEKLNDFLDSTFFVIGFNTKKFDDKLMRANGMKIKTNYDLLEEIRRAGYGSPQWKHQPKHWNYTLEAIARANGMSKTGSGDLAPQLWQQGKHQMVVDYCLNDVKLTNQILKLGLSGQLIDPNTGKYLTLKTLF
>NC_011729.1|WP_083775336.1|2730680_2730857_-|hypothetical-protein
MPAKDIYHDTVKIALQKEGWSITNDPLVLRYGSKDLLVDLGAKKIIAAKRQGTKELPP
>NC_011729.1|WP_015954470.1|2730993_2731155_+|hypothetical-protein
MPEQLEMIIFALSCTSKASLPLKATQGMPVSALLASASSPVGCDTEQVEAIYL
>NC_011729.1|WP_015954471.1|2731254_2731632_+|hypothetical-protein
MSTSITLNLPDQLYRRAQNLAQLINRDINDILIEAINLSFIQTEDLSRVDSLSDQEVIRLTQLEMEPNQDERLSQLLEQQQAGLLNDTERGELWSLMQIYQTLLLQKAQGLNEAVHRGLIQPLSS
>NC_011729.1|WP_015954472.1|2731628_2732060_+|HNH-endonuclease
MSSSPIPETLKIRIRQEAKNRCGYCLSLQKYVLGILEIEHIIPKAKGGTDDESNLWLACRLCNNYKGRQTEAKDPQTDEIVNLFNPRQQNWSDHFQWSEDGTEIIGKTACGRATVIALQLNNLIAVTVRTQWVSAGWHPPENL
>NC_011729.1|WP_015954474.1|2732708_2732921_+|hypothetical-protein
MAKREIQIYNNDGSFRYRIKVERVPVKGDFMQLDGFFYEIEKVLFSDNSPPRVLLSVEQLDLELGEFTEP
>NC_011729.1|WP_015954475.1|2732984_2733314_+|DNA-polymerase-subunit-beta
MEMINLEQRLNISYEQLGQLCQAWNIIELALFGSVLREDFNSNSDIDILVSFAENARITFFDLDIIEAQLSHLFNRPVDIVTKKSILNTHNWIRRQNILGNTKIIYEQR
>NC_011729.1|WP_015954476.1|2733300_2733570_+|DUF86-domain-containing-protein
MNRDNEIILDLVRAIRLILQFTEDLDFNTFSTDLKTQSSVLYKIVIIGEAVNRLSPEFAKTYPQIPINAIRGMRNRVVHQYKEVDIAIL
>NC_011729.1|WP_015954477.1|2734132_2734366_+|hypothetical-protein
MKIIQTKGIIKNKELKVIVPQEVSNGEVDVIIVAKDEPDEFERRHQLMIEKGYDTPEKVVELIRQIKLEMLKEKGRS
>NC_011729.1|WP_015954478.1|2734368_2734821_+|hypothetical-protein
MSLQRLFLDTNVFIIGDANKQSQESLILEALGYRSKSPTLTLEIILSDELVDQIRRVAKYLYGKDQAGQLISNIWRWLDIFYISSTVDWKEEKLKLINAKTIPSEDIEIYLSAKYGAADCFISSNRELIKAIADFECLTPEDFINKYLKQ

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Crispr_ID: NC_011729_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_20

2841764-2844496

Orphan

N:A

Consensus_repeat	Method
CTTTCTATTT--AATGAATCCTGGCAACGGGATTGAAAC	PILER-CR
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CRISPRCasFinder
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CRT

37 spacers

The CRISPR arrays of NC_011729_20

>merge|NC_011729|20|2841764-2844496|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGGAGAAGAATATTTTTCTGAACTGAAGAAAACCAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGATACGATAAACAGCGCGATCGAGCTTGCTAATTTCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTAAAAAATTTCTAGACAGTCTCATCATGAGAATTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGGTGACAACGATCGGCGATCCCCAATCCTCTCTAACGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCTAAGTGTCATTATCGACCCCATGTAATAGGAGGTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGACTAATCCTGAAGATGGAGAAAACATATGACTTGTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCTAGCCTCCTTAATTAAAATTTCTTGGCTAAATTAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTTTTAGGGGGGCCGAATTTAAATTAATTAATATTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGATAGGCTAATTCTGCCACAACAAAATCATCATCTATCTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGATCTTCCTTAACATAAATCATGAATTGACCTTGATGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCTATGCCTCTTAGAGGAATAACAGATTGATCGGGCTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGATCCCTTGAGTAGGGGTGAGCGGTGGGTCAGTATTTGTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGGGTAGGGAAATTTAGTTAAGATCAATGAAACATTTTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGATGAAAAATATGGGCAGGTAGCTATTGTTAAAATGCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGAACTTTATTTGATAAAGATTTAAACAATAACAACAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGATAAACTAAGAAAACCAGACGGTACATTACCATTGTTTCAATCCCGTTGCCAGGATTCATTACATAGAAAGCTTGCCCTTTAGTTTGCGAGGGAACTGTGTGTTGCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCAGAAGGTCCGCCGGGTCCACCTGGGCAACCAGGCCCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTTTGGGCTGTTGTAATTATCGGATTAGGTGCATTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGGTTGTCCAGGGTGAAGCTATGGACAGTGGGGACAAGGCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCAGAAGCGGTTTTCTTAAAGAGTGGCTGTATTCGCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCAAAGTATTCAAGTCAGGTGGAAGGTTTTGGAAAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGAGACCATTATGTCAAGAGCCGAGAAGATCTGGCTCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTCTCAGGCATTGCACAAATGTAAACGAAAATGGGAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTAGCTTGGCTTAACCTAAACAGACCATAGATAAATAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGAAATCCAGAGGCCGCTAAGGAATACGATAGAAAAAAAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCCTATCTTTTATTTCAAATTTAACTATTGACTTATAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTCAACGTCTTTCTCTATATTGTCCTGCCATTTTTCCTCGGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGAAGAAAGTATCGGACCCTTATCAAAATTCAAATGATGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGCGATAAAGATATTTCAGATTGGCTAAAGACTGATGAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTAGCAATAATTTGCGCCCGATTGGTTAAATAGGTTTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTGCCGCACAAGTCGAGGCGATCTATTCTAATTTAGGAGAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGGATCGTAGAGCTATTATGGACATAATGTATTCCAGGAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGATCGTAGAGCTATTATGGACATAATGTATTCCAGGAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGAAATCTGTGGGGTTTTCTTCTCGATGTAGTTCTAAGGCGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGTTGTAGAGCATTCCGTTCCGACTCCCCAAAATTGGCAGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAGGATCGATTCTTGATATTTTGATTTTAGGATAAAAATTGTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG

>NC_011729|20|9|2841764-2844496|PILER-CR
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GAGAAGAATATTTTTCTGAACTGAAGAAAACCA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATACGATAAACAGCGCGATCGAGCTTGCTAATTTC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAAAAAATTTCTAGACAGTCTCATCATGAGAATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GTGACAACGATCGGCGATCCCCAATCCTCTCTAAC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTAAGTGTCATTATCGACCCCATGTAATAGGAGGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ACTAATCCTGAAGATGGAGAAAACATATGACTTGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTAGCCTCCTTAATTAAAATTTCTTGGCTAAATTA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTTTAGGGGGGCCGAATTTAAATTAATTAATATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATAGGCTAATTCTGCCACAACAAAATCATCATCTATCT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCTTCCTTAACATAAATCATGAATTGACCTTGAT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTATGCCTCTTAGAGGAATAACAGATTGATCGGGCT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCCCTTGAGTAGGGGTGAGCGGTGGGTCAGTATTTGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GGTAGGGAAATTTAGTTAAGATCAATGAAACATTTT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATGAAAAATATGGGCAGGTAGCTATTGTTAAAATGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AACTTTATTTGATAAAGATTTAAACAATAACAACA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATAAACTAAGAAAACCAGACGGTACATTACCATT
GTTTCAATCCCGTTGCCAGGATTCATTACATAGAAAG	CTTGCCCTTTAGTTTGCGAGGGAACTGTGTGTTGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAGAAGGTCCGCCGGGTCCACCTGGGCAACCAGGCCC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTTGGGCTGTTGTAATTATCGGATTAGGTGCATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GTTGTCCAGGGTGAAGCTATGGACAGTGGGGACAAGGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAGAAGCGGTTTTCTTAAAGAGTGGCTGTATTCGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAAAGTATTCAAGTCAGGTGGAAGGTTTTGGAAA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AGACCATTATGTCAAGAGCCGAGAAGATCTGGCTC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TCTCAGGCATTGCACAAATGTAAACGAAAATGGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAGCTTGGCTTAACCTAAACAGACCATAGATAAATA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAATCCAGAGGCCGCTAAGGAATACGATAGAAAAAAA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CCTATCTTTTATTTCAAATTTAACTATTGACTTATA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TCAACGTCTTTCTCTATATTGTCCTGCCATTTTTCCTCG
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAGAAAGTATCGGACCCTTATCAAAATTCAAATGAT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CGATAAAGATATTTCAGATTGGCTAAAGACTGATGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAGCAATAATTTGCGCCCGATTGGTTAAATAGGTTT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TGCCGCACAAGTCGAGGCGATCTATTCTAATTTAGGAGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GATCGTAGAGCTATTATGGACATAATGTATTCCAGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCGTAGAGCTATTATGGACATAATGTATTCCAGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAATCTGTGGGGTTTTCTTCTCGATGTAGTTCTAAGGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTGTAGAGCATTCCGTTCCGACTCCCCAAAATTGGCA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GATCGATTCTTGATATTTTGATTTTAGGATAAAAATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG

>NC_011729|20|18|2841764-2844496|CRISPRCasFinder
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GAGAAGAATATTTTTCTGAACTGAAGAAAACCA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATACGATAAACAGCGCGATCGAGCTTGCTAATTTC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAAAAAATTTCTAGACAGTCTCATCATGAGAATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GTGACAACGATCGGCGATCCCCAATCCTCTCTAAC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTAAGTGTCATTATCGACCCCATGTAATAGGAGGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ACTAATCCTGAAGATGGAGAAAACATATGACTTGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTAGCCTCCTTAATTAAAATTTCTTGGCTAAATTA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTTTAGGGGGGCCGAATTTAAATTAATTAATATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATAGGCTAATTCTGCCACAACAAAATCATCATCTATCT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCTTCCTTAACATAAATCATGAATTGACCTTGAT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTATGCCTCTTAGAGGAATAACAGATTGATCGGGCT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCCCTTGAGTAGGGGTGAGCGGTGGGTCAGTATTTGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GGTAGGGAAATTTAGTTAAGATCAATGAAACATTTT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATGAAAAATATGGGCAGGTAGCTATTGTTAAAATGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AACTTTATTTGATAAAGATTTAAACAATAACAACA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATAAACTAAGAAAACCAGACGGTACATTACCATT
GTTTCAATCCCGTTGCCAGGATTCATTACATAGAAAG	CTTGCCCTTTAGTTTGCGAGGGAACTGTGTGTTGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAGAAGGTCCGCCGGGTCCACCTGGGCAACCAGGCCC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTTGGGCTGTTGTAATTATCGGATTAGGTGCATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GTTGTCCAGGGTGAAGCTATGGACAGTGGGGACAAGGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAGAAGCGGTTTTCTTAAAGAGTGGCTGTATTCGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAAAGTATTCAAGTCAGGTGGAAGGTTTTGGAAA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AGACCATTATGTCAAGAGCCGAGAAGATCTGGCTC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TCTCAGGCATTGCACAAATGTAAACGAAAATGGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAGCTTGGCTTAACCTAAACAGACCATAGATAAATA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAATCCAGAGGCCGCTAAGGAATACGATAGAAAAAAA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CCTATCTTTTATTTCAAATTTAACTATTGACTTATA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TCAACGTCTTTCTCTATATTGTCCTGCCATTTTTCCTCG
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAGAAAGTATCGGACCCTTATCAAAATTCAAATGAT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CGATAAAGATATTTCAGATTGGCTAAAGACTGATGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAGCAATAATTTGCGCCCGATTGGTTAAATAGGTTT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TGCCGCACAAGTCGAGGCGATCTATTCTAATTTAGGAGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GATCGTAGAGCTATTATGGACATAATGTATTCCAGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCGTAGAGCTATTATGGACATAATGTATTCCAGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAATCTGTGGGGTTTTCTTCTCGATGTAGTTCTAAGGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTGTAGAGCATTCCGTTCCGACTCCCCAAAATTGGCA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GATCGATTCTTGATATTTTGATTTTAGGATAAAAATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG

>NC_011729|20|6|2841764-2844496|CRT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GAGAAGAATATTTTTCTGAACTGAAGAAAACCA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATACGATAAACAGCGCGATCGAGCTTGCTAATTTC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAAAAAATTTCTAGACAGTCTCATCATGAGAATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GTGACAACGATCGGCGATCCCCAATCCTCTCTAAC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTAAGTGTCATTATCGACCCCATGTAATAGGAGGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ACTAATCCTGAAGATGGAGAAAACATATGACTTGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTAGCCTCCTTAATTAAAATTTCTTGGCTAAATTA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTTTAGGGGGGCCGAATTTAAATTAATTAATATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATAGGCTAATTCTGCCACAACAAAATCATCATCTATCT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCTTCCTTAACATAAATCATGAATTGACCTTGAT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CTATGCCTCTTAGAGGAATAACAGATTGATCGGGCT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCCCTTGAGTAGGGGTGAGCGGTGGGTCAGTATTTGT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GGTAGGGAAATTTAGTTAAGATCAATGAAACATTTT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATGAAAAATATGGGCAGGTAGCTATTGTTAAAATGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AACTTTATTTGATAAAGATTTAAACAATAACAACA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATAAACTAAGAAAACCAGACGGTACATTACCATT
GTTTCAATCCCGTTGCCAGGATTCATTACATAGAAAG	CTTGCCCTTTAGTTTGCGAGGGAACTGTGTGTTGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAGAAGGTCCGCCGGGTCCACCTGGGCAACCAGGCCC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTTGGGCTGTTGTAATTATCGGATTAGGTGCATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GTTGTCCAGGGTGAAGCTATGGACAGTGGGGACAAGGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAGAAGCGGTTTTCTTAAAGAGTGGCTGTATTCGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CAAAGTATTCAAGTCAGGTGGAAGGTTTTGGAAA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AGACCATTATGTCAAGAGCCGAGAAGATCTGGCTC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TCTCAGGCATTGCACAAATGTAAACGAAAATGGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAGCTTGGCTTAACCTAAACAGACCATAGATAAATA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAATCCAGAGGCCGCTAAGGAATACGATAGAAAAAAA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CCTATCTTTTATTTCAAATTTAACTATTGACTTATA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TCAACGTCTTTCTCTATATTGTCCTGCCATTTTTCCTCG
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAGAAAGTATCGGACCCTTATCAAAATTCAAATGAT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	CGATAAAGATATTTCAGATTGGCTAAAGACTGATGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TAGCAATAATTTGCGCCCGATTGGTTAAATAGGTTT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TGCCGCACAAGTCGAGGCGATCTATTCTAATTTAGGAGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GATCGTAGAGCTATTATGGACATAATGTATTCCAGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	ATCGTAGAGCTATTATGGACATAATGTATTCCAGGA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	AAATCTGTGGGGTTTTCTTCTCGATGTAGTTCTAAGGC
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	TTGTAGAGCATTCCGTTCCGACTCCCCAAAATTGGCA
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG	GATCGATTCTTGATATTTTGATTTTAGGATAAAAATT
GTTTCAATCCCGTTGCCAGGATTCATTAAATAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_157867594.1\|2836653_2837295_+\|Sua5/YciO/YrdC/YwlC-family-protein	unknown	unknown	gnl\|CDD\|223088
NC_011729.1\|WP_015954588.1\|2846243_2846489_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954590.1\|2846865_2848317_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235978
NC_011729.1\|WP_015954589.1\|2846491_2846869_-\|cation:proton-antiporter	unknown	unknown	unknown
NC_011729.1\|WP_015954584.1\|2841188_2841644_-\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_011729.1\|WP_015954586.1\|2845388_2845931_-\|DUF4040-domain-containing-protein	unknown	unknown	gnl\|CDD\|236006
NC_011729.1\|WP_015954591.1\|2848313_2848649_-\|cation:proton-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236258
NC_011729.1\|WP_015954578.1\|2835683_2836190_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|226311
NC_011729.1\|WP_015954580.1\|2837404_2837866_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954583.1\|2840599_2840917_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954577.1\|2834159_2835680_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NC_011729.1\|WP_015954592.1\|2849157_2849556_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NC_011729.1\|WP_083775339.1\|2851781_2852171_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376574
NC_011729.1\|WP_015954593.1\|2850201_2851104_-\|DUF3445-domain-containing-protein	unknown	unknown	gnl\|CDD\|378763
NC_011729.1\|WP_015954587.1\|2845923_2846214_-\|monovalent-cation/H(+)-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|377023
NC_011729.1\|WP_015954581.1\|2838425_2839520_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_011729.1\|WP_015954582.1\|2839607_2840270_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_011729.1\|WP_015954575.1\|2831024_2832620_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954585.1\|2844726_2845389_-\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|237140
NC_011729.1\|WP_015954576.1\|2832773_2833739_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_157867594.1\|2836653_2837295_+\|Sua5/YciO/YrdC/YwlC-family-protein	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	2.36826e-36
NC_011729.1\|WP_015954581.1\|2838425_2839520_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.17001e-24
NC_011729.1\|WP_015954591.1\|2848313_2848649_-\|cation:proton-antiporter-subunit-C	gnl\|CDD\|236258	PRK08389, PRK08389, putative monovalent cation/H+ antiporter subunit C; Reviewed.	8.19514e-42
NC_011729.1\|WP_015954584.1\|2841188_2841644_-\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	5.83782e-47
NC_011729.1\|WP_083775339.1\|2851781_2852171_+\|hypothetical-protein	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.77182e-12
NC_011729.1\|WP_015954578.1\|2835683_2836190_-\|glutathione-S-transferase	gnl\|CDD\|226311	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only].	8.87993e-37
NC_011729.1\|WP_015954577.1\|2834159_2835680_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	1.24282e-100
NC_011729.1\|WP_015954592.1\|2849157_2849556_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	2.88509e-18
NC_011729.1\|WP_015954593.1\|2850201_2851104_-\|DUF3445-domain-containing-protein	gnl\|CDD\|378763	pfam11927, DUF3445, Protein of unknown function (DUF3445). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.	5.01645e-76
NC_011729.1\|WP_015954587.1\|2845923_2846214_-\|monovalent-cation/H(+)-antiporter-subunit-G	gnl\|CDD\|377023	pfam03334, PhaG_MnhG_YufB, Na+/H+ antiporter subunit. This family includes PhaG from Rhizobium meliloti, MnhG from Staphylococcus aureus, YufB from Bacillus subtilis.	1.27237e-11
NC_011729.1\|WP_015954590.1\|2846865_2848317_-\|cation:proton-antiporter	gnl\|CDD\|235978	PRK07234, PRK07234, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_011729.1\|WP_015954586.1\|2845388_2845931_-\|DUF4040-domain-containing-protein	gnl\|CDD\|236006	PRK07377, PRK07377, hypothetical protein; Provisional.	1.06646e-89
NC_011729.1\|WP_015954582.1\|2839607_2840270_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	5.62717e-21
NC_011729.1\|WP_015954585.1\|2844726_2845389_-\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|237140	PRK12567, PRK12567, putative monovalent cation/H+ antiporter subunit B; Reviewed.	3.18856e-105
NC_011729.1\|WP_015954576.1\|2832773_2833739_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.26376e-48

>NC_011729.1|WP_015954584.1|2841188_2841644_-|DUF29-domain-containing-protein
MSQVPTDVGKNESDLKKMPIYERDFYQWTIEQAQALREQKLEAIDWINLTDEIESLGNEQLHAVESYLKQLIPHKFKLQYVNDQYSRKGWEDEIDNFLDEIEDRLTNSMRPKIDLDKIYQRARRNVLKRYPLLEKTLPQECPYTLDELVSR
>NC_011729.1|WP_015954583.1|2840599_2840917_-|hypothetical-protein
MIEFLLVGLSLLIFVSLFYFLVKFQQEIQKQNLKTNKSLYWRSSPNFSQKSQPKNIHLESKLLQMVGGKRDIAQRLVDNIKRKNPRRNEKWCWEKAIYDLERDRQ
>NC_011729.1|WP_015954582.1|2839607_2840270_-|HEAT-repeat-domain-containing-protein
MSVTPESVQILINSSDFGERIKGINQLRSLDPKIAFEIIQPLVTDPNARVRYAAVSQLDPLGKQDLDKALELLLDRLRYDSEVDVKAVAADVIGGLKLTTAFEDLQQLYYQTSEWLIQLSIIACLGEFGDPRGFELLESALNSDNNLVKTAAISSLGELGDQKAIAVLMPFLEDEDWQIRYRLVQAFGRLGGEQTRAALEQLSQDSVEQVAQEAKTYLNH
>NC_011729.1|WP_015954581.1|2838425_2839520_-|tetratricopeptide-repeat-protein
MINIPKASLTLLFGLLLSGFPSISPLLAQTNQPISANQNNEQLRELLRQGRKYVDDGNYSQAITLYQQAATLDQENPKIFSGIGYLYSLQGNFPAAVRAYQQALALEPSNPAFYYALGYNLAHTGDYSNAATAYYYAMQLEPKNLKHYIGLGVVLLRQKDYDKAIEVYQWVLALDPNNQEAHEIMGVALLEQKRTSEAISFLENAVEKFPGSTELKLQLASVSLAQGDFDRGLNLLEQVERRDPSNYKIQMKIAIILEKKERYEDALTAYRRATYLDPKSIEANAGIGRVFLAQKDYLGAIVVYKELAELAPNNPDVYYNLGLALKGRDRKQEAKQALEKARQLYQSRNDQEGVKKVDQLLKKK
>NC_011729.1|WP_015954580.1|2837404_2837866_-|hypothetical-protein
MKSVKRTEQQLILTFLPISAWLSCVISLIGGFFLPYPWCLVWYIPSTIINVFILFFADSVNCYFDQAKNQLIQQKLGIRGRRIKKIPLSEISGVYLEKLRIKKDYIYLIYFSLNSEKKFYLIRWNYANFREMHSSVNSICEFLKLPPYQLIDR
>NC_011729.1|WP_157867594.1|2836653_2837295_+|Sua5/YciO/YrdC/YwlC-family-protein
MMPLPTAQRSINLVREIEDFLEAGEVIILPTDISYILVAHAFKPRAIAKIAQLKGWNSPQPLILLTNRKKVEEFGVVSPASGKLIDHFPYPITLIIPKKKSIPDSITAQHSSLFIACPDQFIYDLVDQISFPMVCTTAGFSADYKARRYRTAIQLFEGQVPLIVDGGDCKYDSKGTLIDCTLETPTILNFGTVSVDDLREILPEIELPSHLRK
>NC_011729.1|WP_015954578.1|2835683_2836190_-|glutathione-S-transferase
MSHLIPISTLFIGLNGLIAFVLSYIVVMERSKTRLWHGESKQDVAFQSDPLTNPNIVATTVEKLTNALFYDIEGDEGALQRKVRAHANFTEYVPLALLFMIALELMSSPTGLIWVLGGSLTVARIAHGYGVIVTYGPSPGRAIGFFLTWFVYLLGAGACIYYGMQELI
>NC_011729.1|WP_015954577.1|2834159_2835680_-|uroporphyrinogen-III-C-methyltransferase
MTSGKVYLMGAGPGNLDYLTLKGYQVLSIADVLIYDDLVDPQLLQLVPSECIQLYMGKRGGSPSTPQDIINLLLVDFCLQGKQVVRLKGGDPFIFGRANPEIESLVASNCDYEVIPGISSALAAPLLAGIPLTDKNLSRCFVVLSGHDPDSLDWEAIALIDTIVILMGGRSLEAIINHLQDKGRSPTTPIAIIRDCARPQQQIWSGTLETIVDQVAEISLSPTVIVIGDVVTLRQMSSSSSLPLSGKTVLVTRSAEQSSKFSDLLQQQGATVIEMPALEITPPSSWEKLDQAIANLGEFDWLILTSANGVNYFFERLGDRGKDARSLAGVKIAVVGKKTAETLKQQGVLADYIPPDFVADSLIDHFPEELKGKKILFPRVETGGREVLVKELGGQGAKVIEVPAYQSGCPQQINPQAWQALQEKMIDIITFASSKTVQNFYYLLQQALTSNSENSPQGLLEKVCIASIGPQTSKTCYEALGRVDIEAQEYTLEGLTDALIQWVNHS
>NC_011729.1|WP_015954576.1|2832773_2833739_-|glycosyltransferase-family-2-protein
MKKLIIQIPCYNEEATLGLTLSKLPRQIPGVDKVEWLIINDGSIDKTVEVAKACKVDHIVNFEHNQGLAKAFMAGIEACLKAGADIIVNTDADNQYNAADIPKLIQPILDGDAEIVVGARPIEEIEHFSPVKKMLQKLGSWVVRIASKTKIPDAPSGFRAISRNAALRLNVFNEYTYTLETIIQAGQKGIRITSVPIRTNNYLRPSRLVKSIPTYIQRSILTIIRIFMTYQPLQFFTILGSVPFTVGFLLCLRWIILYLGILGDSPDKPRTPSLIFAAILIIIGFQLWMFGLIADLMSVNRKLLEDIQLRIRKSDLNSPHK
>NC_011729.1|WP_015954575.1|2831024_2832620_-|hypothetical-protein
MTKDLFATEAIAQIPKLLTLLDRNPHSPTYGCFDRNFWQYKIIDFPSGMSQEFVYPLALAYHTHIINNPFYHQPVIKDWVEAGILYAAKSAHKDGSCDDYFPFERAGGAAAFSLLACVESYQLLNLKNQKIIDFFVKRADWLAHHQESGRLTNHQALIVLCLEILSRLLNTDRWNREKEQRLEQVLSWQNPEGWFQEYEGCDPGYHTLTISCLARIYEFNPHNRLKDAIAKAVILASHFIHPDGSYGGEYTSRNTYNFFPHGFELVGKWLPEALNINDQFLKGMAKGLAPCYADDHIIGHHTWNYLLAWRDFAPVRPPLKPRPQGRFRLSEGGILIDRRGNTELYLALNKGGVFKLFRDGELRASDTQFSLEVQDGKKLKNAVAHLVSQRYKIEVEEDIITISGSLGWAKQKQMTTLNLMILRIVMYSFGRFFPNLIRKLLQKILITGKKNAPFSFLRQLRWENGHWKVIDELNAESWEQVVSAGIGCDQTSIYVVMSRTFQRGQLRQWLELTDKIKPLKTGEKLILEREF
>NC_011729.1|WP_015954585.1|2844726_2845389_-|Na(+)/H(+)-antiporter-subunit-B
MKWLYGIAAIAFCLKILFIPHPPANLSDIAIVESIVQDSGVPNAVSGIIFRNRLYDTIFEVVVFTIAIIGASFLLANEKPARMIYQFSDQPSIVLARLGATIAALVSIELAIRGHLSPGGGFAAGVAGGTAIGLIAITSNPEWMQGIYRHWHVATWEKVSVLIFIVLSVITLAGFELPQGQLGTLLSGGVIPILNLLVAIKVALGSWGVILAFIRYRGLF
>NC_011729.1|WP_015954586.1|2845388_2845931_-|DUF4040-domain-containing-protein
MNEFYLPVIIALLPLMACLLVLQVNPYHALVIRGVLGAIAALVEALLGAADVALTEALVGTMLAITLYAVAVRSSLVLQLGIVENESSGMDKLFEELRTILGKRHLRLELIPYNDVQTLHQALIDKEVHAICSLSESTGQENQTYHTQTRIQRIYDILHSELSWPKASLSYFNLNLKEKH
>NC_011729.1|WP_015954587.1|2845923_2846214_-|monovalent-cation/H(+)-antiporter-subunit-G
MAISLIDFFSYACLSLGIFFWLWGTFPLLGNRSVLFKLHGLSVADTLGSMSMIVGLLLKIPSEWPLLLLAIICLAIWNTMLGYVLAYCSSRGGDDE
>NC_011729.1|WP_015954588.1|2846243_2846489_-|hypothetical-protein
MSLILIAMILALLIPIYVAWRDDEIWQKMLAFASISSKTSMMILIISVVRDDWMLGVVGVIILAVGNAALMLLAHIIKRLN
>NC_011729.1|WP_015954589.1|2846491_2846869_-|cation:proton-antiporter
MILHLILRLTIWFLLTSDLSLANIIIGVAIAFLLPRGHTSPERLKDWVRIVGEIIVAVPQAFFEAFEIIFRPHNREEIKLERVKPQRSPYLIFLDIFLITFTPKTIVLKYQQKGWYEVHRIERGK
>NC_011729.1|WP_015954590.1|2846865_2848317_-|cation:proton-antiporter
MISLTIAWLALPFFLGFIIYLVPKLDRYLALTIALVSVAYSFVLFSQKNPLTLKLLDNFGVTLIADQLSAFFILTNALVTLAVIIYCWPTDKTAFFYAQIAILHGSVNATFICADFVSLYVALEVLGIAAFLLIAYPRTDRAIWVALRYLFVSNTVMLFYLVGVALVYQEHHSFYFAGLQGSAPEALALILLGLLSKGGIFISGLWLPLTHSESESPVSALLSGAVVKAAVFPLARCALVFEEVDPVVRFFGVGTALLGVSYAVFEKDVKRMLAFHTVSQLGFILAAPEVGGFYALTHGLVKSALFLIAGVLPSRKFKELKQTPINTKVWIALVIASFSISGFPLLAGFGAKVLTMKNLVSWQIIGMNIAALGTAISFAKFIFLPPGGEEKKLHFGFWGAIILLIGGLFVANGVYYNAYTLENTIKPLATIFLGWLAYLFIFQRSALILPRYLEQFDHLIGMMSLVLILLFWMVWTWSPGGAL
>NC_011729.1|WP_015954591.1|2848313_2848649_-|cation:proton-antiporter-subunit-C
MLEAFILASILFGFLGIIFKKNLIMKIISMDVMSTGVIAYYVLVASREGLLTPIMNSNNGGDYADPVPQAVILTAIVIGFSIQALMLVAVMKLAKNNPTLETDQIEKNNTP
>NC_011729.1|WP_015954592.1|2849157_2849556_+|cyclic-nucleotide-binding-domain-containing-protein
MLQPVRTLEMFQKPPSPKTFYAGQAIFNEGDLGDVMYGIIQGEVQMSVNGKVVENLYQGDIFGIGALIHSDFQRTSTAIAVTDTILAFLDRRNFLYAVQETPMFAICVMKSYSNRFRQLKSLTCSQSNEFLP
>NC_011729.1|WP_015954593.1|2850201_2851104_-|DUF3445-domain-containing-protein
MNQTKYLPKQIIQGKWKMTAGLAPLNLSEWIDIDENFISTVTLKAQLLKDKTTEVFTALPNTIEAQQEILELLLDHLLTYFPQYYLQQGTILKNLQTNQVFELNYYKDAPLTLALHLVAEDIFLLQPSEKGYILTAGVACFPFFWRLQDKIGLPIEQIHQPVPEYAGKLSKTVNLYFDHLLSTSPGYRIAWGIVPTPQLVLEQMQPPGWENTLTPSNIGERLWLRSEYQTFRRLPHSGGIVFTIRTFVNPLSTLKSMPSMAHNLATVIREMPPETQAYKKIQPFLNPLLNYLDSHPLGLI
>NC_011729.1|WP_083775339.1|2851781_2852171_+|hypothetical-protein
MVEKLCLNAVITVDSFQVTKLLHSELNQGRIEQKKTAESLEVKARVKLFSSLKGGKYVFLKRENDLKESQREKLLIMKEASALIKVMHDMKEELVAKGEQQSACMKREGEKTIPTCIPLPLKKALEIYQ

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Crispr_ID: NC_011729_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_21

2860565-2860657

Orphan

N:A

Consensus_repeat	Method
CCCTTAAAAAGGGGGGCTTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_21

>merge|NC_011729|21|2860565-2860657|CRISPRCasFinder
CCCCTTAAAAAGGGGGGCTTTAAAGGAATATAATGCCCTTAAAAAGGTGGGCTTTAAAGGAATATAAATTGCCCTTAAAAAGGGGGGCTTTAA

>NC_011729|21|19|2860565-2860657|CRISPRCasFinder
CCCCTTAAAAAGGGGGGCTTTAA	AGGAATATAATGCCCTTAAAAAGGTGGGCTTTAAAGGAATATAAATT
GCCCTTAAAAAGGGGGGCTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_157867406.1\|2862226_2862460_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954602.1\|2863914_2864694_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NC_011729.1\|WP_015954596.1\|2855948_2857769_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132152
NC_011729.1\|WP_015954606.1\|2871007_2871475_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954595.1\|2854742_2855582_-\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|377111
NC_011729.1\|WP_015954591.1\|2848313_2848649_-\|cation:proton-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236258
NC_011729.1\|WP_015954592.1\|2849157_2849556_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NC_011729.1\|WP_083775339.1\|2851781_2852171_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376574
NC_011729.1\|WP_015954603.1\|2864801_2865110_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954608.1\|2873505_2873904_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227786
NC_011729.1\|WP_015954600.1\|2860791_2862000_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_011729.1\|WP_015954605.1\|2867328_2870895_+\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_015954594.1\|2852294_2854340_-\|G-D-S-L-family-lipolytic-protein	unknown	unknown	gnl\|CDD\|238871
NC_011729.1\|WP_015954607.1\|2872163_2873468_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_011729.1\|WP_015954597.1\|2858056_2858929_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|237252
NC_011729.1\|WP_157867408.1\|2863031_2863769_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181635
NC_011729.1\|WP_015954599.1\|2859573_2860401_-\|S-methyl-5'-thioadenosine-phosphorylase	unknown	unknown	gnl\|CDD\|180977
NC_011729.1\|WP_015954593.1\|2850201_2851104_-\|DUF3445-domain-containing-protein	unknown	unknown	gnl\|CDD\|378763
NC_011729.1\|WP_015954598.1\|2859113_2859557_-\|biphenyl-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|259872
NC_011729.1\|WP_015954604.1\|2865576_2866659_+\|DUF3102-domain-containing-protein	unknown	unknown	gnl\|CDD\|371455

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954602.1\|2863914_2864694_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	4.25296e-110
NC_011729.1\|WP_015954596.1\|2855948_2857769_+\|hypothetical-protein	gnl\|CDD\|132152	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.	3.19324e-06
NC_011729.1\|WP_015954595.1\|2854742_2855582_-\|META-domain-containing-protein	gnl\|CDD\|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	1.89197e-27
NC_011729.1\|WP_015954591.1\|2848313_2848649_-\|cation:proton-antiporter-subunit-C	gnl\|CDD\|236258	PRK08389, PRK08389, putative monovalent cation/H+ antiporter subunit C; Reviewed.	8.19514e-42
NC_011729.1\|WP_015954592.1\|2849157_2849556_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	2.88509e-18
NC_011729.1\|WP_083775339.1\|2851781_2852171_+\|hypothetical-protein	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.77182e-12
NC_011729.1\|WP_015954608.1\|2873505_2873904_-\|hypothetical-protein	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	2.1499e-09
NC_011729.1\|WP_015954600.1\|2860791_2862000_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.82205e-52
NC_011729.1\|WP_015954605.1\|2867328_2870895_+\|NACHT-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.62023e-87
NC_011729.1\|WP_015954594.1\|2852294_2854340_-\|G-D-S-L-family-lipolytic-protein	gnl\|CDD\|238871	cd01833, XynB_like, SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.77123e-42
NC_011729.1\|WP_015954607.1\|2872163_2873468_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_011729.1\|WP_015954597.1\|2858056_2858929_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	1.78061e-174
NC_011729.1\|WP_157867408.1\|2863031_2863769_-\|glutamine-amidotransferase	gnl\|CDD\|181635	PRK09065, PRK09065, glutamine amidotransferase; Provisional.	3.20716e-96
NC_011729.1\|WP_015954599.1\|2859573_2860401_-\|S-methyl-5'-thioadenosine-phosphorylase	gnl\|CDD\|180977	PRK07432, PRK07432, S-methyl-5'-thioadenosine phosphorylase.	0
NC_011729.1\|WP_015954593.1\|2850201_2851104_-\|DUF3445-domain-containing-protein	gnl\|CDD\|378763	pfam11927, DUF3445, Protein of unknown function (DUF3445). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.	5.01645e-76
NC_011729.1\|WP_015954598.1\|2859113_2859557_-\|biphenyl-2,3-dioxygenase	gnl\|CDD\|259872	cd04210, Cupredoxin_like_1, Uncharacterized Cupredoxin-like subfamily. Cupredoxins contain type I copper centers and are involved in inter-molecular electron transfer reactions. Cupredoxins are blue copper proteins because they have an intense blue color due to the presence of a mononuclear type 1 (T1) copper site. Structurally, the cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel. Some of these proteins have lost the ability to bind copper. Majority of family members contain multiple cupredoxin domain repeats; ceruloplasmin and coagulation factors V/VIII have six repeats; Laccase, ascorbate oxidase, and spore coat protein A, and multicopper oxidase CueO contain three repeats; and nitrite reductase has two repeats. Others are mono-domain cupredoxins, such as plastocyanin, pseudoazurin, plantacyanin, azurin, rusticyanin, stellacyanin, quinol oxidase and the periplasmic domain of cytochrome c oxidase subunit II.	3.0501e-66
NC_011729.1\|WP_015954604.1\|2865576_2866659_+\|DUF3102-domain-containing-protein	gnl\|CDD\|371455	pfam11300, DUF3102, Protein of unknown function (DUF3102). This family of proteins has no known function.	3.3964e-10

>NC_011729.1|WP_015954599.1|2859573_2860401_-|S-methyl-5'-thioadenosine-phosphorylase
MDALKDVQEITLNTPFGSPSDAFIVGTLEGTTVAFLARHGRNHHLMPSELPFRANIHGMKQLGVEYLISASAVGSFQEAIKPLDMVVPDQFIDRTKNRISTFFGEGIVAHISFGDPVCPNLGKVLIDAVASLNLPDVTLHRNGTYVCMEGPAFSTKAESNLYRSWGASVIGMTNLPEAKLAREAEIAYATLALVTDYDCWHPDHDQVTVEMVIGNLHRNAINAQKVIQETVRRLAENPPLSAAHSALKYAILTSLDKVPPQTKEKLALLLQKYDQ
>NC_011729.1|WP_015954598.1|2859113_2859557_-|biphenyl-2,3-dioxygenase
MKNQMGFKLELILVLVISFSLMWSLPALASTDTTQVKVSLGNSAGELKFFPNHFEFVAGQKYKLLLDNPSPTKHYFTSKDFADASWTQKVEAGKVEVKGAIHELELKPGAEAEWVFIPLKGGTYELHCSVSGHSEAGMIGDIVISAQ
>NC_011729.1|WP_015954597.1|2858056_2858929_-|type-I-methionyl-aminopeptidase
MRIITDLFFPEQKQTQSTPKPKKQQTTGLPPMKKSRRGIHIKSPQEIEIMRQSGKIVATVLKEISQMVEPGMTTADLDVYAEKRIREMGAIPSFKGYYGFPASICICINHEVVHGIPNPKKQIRSGDVLKVDTGAYYQGYHGDSCITIAVGNVSKGAKRLIQVAEESLYKGIEQVKAGNYLLDIAGAIEDHIKINKFTVVEDFTGHGVGQNLHEEPSVFNYRTNELPNVKLKAGMTLAIEPIVNAGSKHTRTLKDRWTVVTVDKSLSAQFEHTVLVTETGYEILTDRTHL
>NC_011729.1|WP_015954596.1|2855948_2857769_+|hypothetical-protein
MNLFFIAWNFPHDKESFVLSEIYNMTKVYPLLDPKTIWSFGEGKGVFAASIHTDHNIAAPRIYVKQNDNQVVLYDGCLVDQTGRFNAHDARALWEHWHDLPSSLEGQFVTIQVSKNPPSIEIINDALGVYPVYYLRLGNTYFLSNSVLLLRRISHVSEFDPLGVSLFLCWGWASGDRTLLNDIRVIPGGQHWKWEEGVTEPKRITYFDRAKLSRSRYGKERLSKADLQQLADKLIHPCQSLAQSFAPLDCPITGGRDSRILISLLIRGKIEAQYFTRGASDNIDVQIATEMARYFNLPHRITSQGAEHLVIDDWEEASKQWVQQNDGMVSLAHFAQQPLQVKRLGVELNGAGGEIARGIYNSVTRHGARFFLRGHNLDFVKQYLARQVIKSRDELLNQETIRIVQEYLENFVDEVIDEGFSPFDVPDVFYGYERVRRWAGVSHLFLGRQYRDVFAPLCTRPFMEQAFSISAPYRYTNLLHYQLIYFLEPKLHSFLMEENWPPQQPIINFVHDFLHHQFKKIEKTIGISSKHPATTQEEKWRWLESKIEYIRELCLDQSKSSPLWDLVNRPKFEQITSSDTNPLVRYPTQLTLWDVTTLFQYAQLVA
>NC_011729.1|WP_015954595.1|2854742_2855582_-|META-domain-containing-protein
MIFKSNKISLIFLSFLLTLLNVNVANSSEQNFLSQQGIETGSNIINTKWQLVNYLTSAGNLSLPYSEHEPTLRFDSQRVSGTSGCNQFMGNYKLEQKNLSFQGFASTQKACFTEGLSAQEQDFLKALGQVASYELDNDLLQLKDSQGKNILTFQKIRPASLTQNLWQLQQYNNGRGGIVSLISGTEIILVIDDQGKLRGNAGCNQYQSQWKGTAENFQISPPISTKKFCNQPEGIMEQETAYLSSLEKVNSWEIEGSNLVLKDAEGNRLASYQATLFKD
>NC_011729.1|WP_015954594.1|2852294_2854340_-|G-D-S-L-family-lipolytic-protein
MNQLNSSNLLIEAENLNLENYGIQTFSGASNGQLISLLNGKDSGTASTQFTGASGYYDILIGYYDEIDGKSLLQFKVNDETKDQWRADQQLDPQGFVATSKNFTDRLIRGISLKNGDTLTIKGFQDQQEYGRIDFMKLIPSEDIIIEAEKLELENYELQNFSVASNRQVVSLSNGKNNGSASTEFIGFAGSYNIIVGYYDEIDGESLFQFKVNDHIKDEWKADQQLDPQGFTPTSKNFTERLIQGISLKPGDILEIEGFRDQQEYARFDFIKIIPSQQIIIEGKENSNIIQGDENKSDTLDYSQLKNGIIGNLSTGEVIKPLYGISNGSKIMPLGDSITAGTGKYPVFGGYRIQLWNNFLTDNLTVDFVGSMSNGPDQIDKNHEGHGGWKINQINDLINEGILNTYQPQTILLMIGTNDILKTDNSVNQMVADLDKLINDITEKSPNCQLLIGSIAPISPSGRDPEKIGRISPYNANIQELVADKFNQGKKIAFVDIGGTLSEDDLSDGVHPNRKGYDKMGDLWYDSLVKKDNLFSIENITGTSFNDTLIGNNSANIITGGQGDDLLTGGEGADVFAYEKIGENFDTITDFTSGQDHLSFSTSGFRGGLVAGINLTTSISLTGVFVRGDSPTAIGSSANFLYNTNTGILSFDVDGNGTTIAKPIVYLEGAPLLNANDIMIV
>NC_011729.1|WP_083775339.1|2851781_2852171_+|hypothetical-protein
MVEKLCLNAVITVDSFQVTKLLHSELNQGRIEQKKTAESLEVKARVKLFSSLKGGKYVFLKRENDLKESQREKLLIMKEASALIKVMHDMKEELVAKGEQQSACMKREGEKTIPTCIPLPLKKALEIYQ
>NC_011729.1|WP_015954593.1|2850201_2851104_-|DUF3445-domain-containing-protein
MNQTKYLPKQIIQGKWKMTAGLAPLNLSEWIDIDENFISTVTLKAQLLKDKTTEVFTALPNTIEAQQEILELLLDHLLTYFPQYYLQQGTILKNLQTNQVFELNYYKDAPLTLALHLVAEDIFLLQPSEKGYILTAGVACFPFFWRLQDKIGLPIEQIHQPVPEYAGKLSKTVNLYFDHLLSTSPGYRIAWGIVPTPQLVLEQMQPPGWENTLTPSNIGERLWLRSEYQTFRRLPHSGGIVFTIRTFVNPLSTLKSMPSMAHNLATVIREMPPETQAYKKIQPFLNPLLNYLDSHPLGLI
>NC_011729.1|WP_015954592.1|2849157_2849556_+|cyclic-nucleotide-binding-domain-containing-protein
MLQPVRTLEMFQKPPSPKTFYAGQAIFNEGDLGDVMYGIIQGEVQMSVNGKVVENLYQGDIFGIGALIHSDFQRTSTAIAVTDTILAFLDRRNFLYAVQETPMFAICVMKSYSNRFRQLKSLTCSQSNEFLP
>NC_011729.1|WP_015954591.1|2848313_2848649_-|cation:proton-antiporter-subunit-C
MLEAFILASILFGFLGIIFKKNLIMKIISMDVMSTGVIAYYVLVASREGLLTPIMNSNNGGDYADPVPQAVILTAIVIGFSIQALMLVAVMKLAKNNPTLETDQIEKNNTP
>NC_011729.1|WP_015954600.1|2860791_2862000_-|RNA-directed-DNA-polymerase
MVRHKSNFSELWHKLPWKKFHRTLFRLQVRVFKAIRAGDNRRARNLQKLILKSRCARLLAIRQVTQLNPKVDEVTSLTFKQRLELEKVLNSQVNQWKHSKLREISIPKTDGTHSILKVGTIKDRAWQYLVKYAIEPAHEAKFHPRSYGFRRGRTAWDAQKFLFQNLNAQAKGIEKRILQLDLEKCFHRINHSTLMEKVIAPMSIKLGLWQSLKTGINPQFLGQGEGISPLLANITFDGIETIHQSLRYGNEMVFILDPSDAADQIIAQIEDFLGQIGLKIESNQIKLVSSTEGFDFLGWHFRVQSNGKFRSIPSADNFKTFRKKVKAIVNCSNYGASEKAKKLAPLIKGWRQYHQFCNLDGKFSLWHMNQRAWKVFNKEKNLNRHQVNDLIKKAFPKVKRQK
>NC_011729.1|WP_157867406.1|2862226_2862460_-|hypothetical-protein
MTRLGFGRLKLEAGRNQRATVWLTLALLGVPMVKQQPKKATYPQAGIQPRHLTTLTQPEPKISPASCIVTGRTLRFW
>NC_011729.1|WP_157867408.1|2863031_2863769_-|glutamine-amidotransferase
MSDLMKPILIIKTGQALSSIPAEKGNFEDWIISKMGISREQAIIAEVYNGFDLPPWDEVSGIVITGSSSMVTEGHDWSEKTAKWLVNGIKKDLPILGICYGHQLLAYALGGEVGKNPQGCEFGTVNIYFNDNTLDDQLFRGLPQTIKAHVCHQQSVLKLPDNAIALGFSERDNYQAFRMGDRVWGVQFHPEFDGDVLRDYINYDREPLLKDQQDPDRLIEEILDTPHSHEILKRFTKVVKEVASV
>NC_011729.1|WP_015954602.1|2863914_2864694_-|ATP-binding-cassette-domain-containing-protein
MVEPLIQFKNVSKRFGSKVILDNVDLQIYPGEAVGVIGPSGSGKSTVLRVIAGLVAPDSGEVYIHGKRRIGTVNQGEDPLGVSVVFQQSALFDSLTVDENIGFALYRHSKLPPQKIRELVDQALLMVGLPGTGDRYPSQISGGMRKRVGLARAIVANIDPTLARTNPNILMYDEPTAGLDPVASTRVEDVIRRVVGYQGICEAYLIVTHQESTIRRTTDRIVFLYQGKFQWDGPTHDAYTSDHPVLQQFFSGSVEGPIQ
>NC_011729.1|WP_015954603.1|2864801_2865110_+|hypothetical-protein
MLEGWLIPLRGIYCKASYRSILSLASVGSLLSIASVGSILSIGSVGSILSIASAGSILSVGSAGSILSCFGVGSILSFFRYKSLLNQEIIPNFISNFPGNKD
>NC_011729.1|WP_015954604.1|2865576_2866659_+|DUF3102-domain-containing-protein
MTFNGKSIQSNVFDYSSLSQEKRQFVQEKTDEIKNLIRRTAQNVIDIGQKLLEVKEQVGHGYFLNWLKTEFNWSVSTATKMMQASEKFKNVNFTNLNFSPSALYLLAAPSVDDEIREEALVLAESGTKINYSLARNLIRHYKYTTNSLTQKDFILDLKKSDDNDNRVLAQTLKQTFVDAKSISIEETCFSSNSNIIVPMVDFDFFNHYLFREWLRASREKVFLSLILGNLANLHFYNNKLPYISRHESGQLLISILNKTLKRSTDLYTFYDEEKFLLLLSNTPLDGALQIAKTVKKQFEMRQSQISSEHKSLIDTCTLNLIVCSLVPSNDLSVNFLLSVLEQELINIQIQGEESISIKQF
>NC_011729.1|WP_015954605.1|2867328_2870895_+|NACHT-domain-containing-protein
MNKLINQVNDLNVEELSLLDKLVFSIKGAYLSDLQKTILRYSLDNYTYDEIAEKEGYSEKYLKRDVGPKLWKILSIALGEKVGKKNFREALDRKIKEINKISNLDDNEKFKNTSQKVLSASGFWGRTQELAKLQQWILNDSSNLVVIFGMAGIGKTVLVQKLAQQIDDYFEQIIWFSPVQNIFQETNFDNFYNNLSDSFHNLCFEEIENKTCKDFFHYLLNHKILIVIDDFDFFYRTNDLSCHQEKGVKFVLNLIEYMENSWHQSCLILLSREKPKFSSLKKNNSIRWLELKGMKKSEVETIFSYENVIGSKNEWEQLINIYENNPKFLSIALSKISSVFNKNIFSFIEKGFFVFGEINACYRWYHMRLTEEEKEIMYWLAIFQEDISIKTIQQYFISSKNSLATIMEVIETLQDLSLIYLNGDRFGLSFLTQKYFSEYLLQLFFDDLSQQNYNIIKSHSLLTLTLSYHIQECQINNFIKPLIERLINFFGKKELLKNHLNNFILKTKKEGHLLRGYAVGNILNLMAYLEQDLSHLDLSHLTILQVNFQTYKLHHSSLANSVLINSIFSEDFAFIKALKFGSTNQFLMAVTQDSRLIGWDLKNSQQIVHFDCYQSLAQSGIFNDTGEMVILAYKNKNCLRIFNTKTGQCQKTFETETGSLTSLAISSDNQFLASGSNNSTIEIWSVSSGRCVKVLQGHTSGINCLSFSPDGQFLATGSHDSTVRIWSVSSGRCVKVLQGHTSGINCLSFSPDGQFLASGSHDSTVRIWSVSTGQCLEHLQGHTSGINCLSFSPDGQFLATGSHDSTVRIWSVSTGQCFKYLPTHVGGVHSLSFTSDSQFLAVSNSKFSVKIWSLNESRCYRVLHSNKEWSSSLAFSPDNQFLASNSQTLSFNLWNCNKEQIVQTFEKNTDVVKTVSFNPKGNILVSGSNNGEIRLWSLDSFNCLKILRGHINPICSTIFSPTGHLLASSCSEGQIQLWDVATGECLKSLSRYSEQLQGITFNSTGKLLVSNYSDGTIKLWDVATGECLKSLSRIGKEIKTICIPSQDDQHLIYVTDNGDLEIWDIQLNQCIHSFSVDLIEVASFSQDGQFLATDSNNNVIKLWNVNTRQYIKSLPTHKSFICAMTFSSDNKILSSSSLDGEIKLWDLETGNCQRTLKNPKFYQNLNIANIEGLNNTQVLTLKSLGAFS
>NC_011729.1|WP_015954606.1|2871007_2871475_+|hypothetical-protein
MFNRVAILAIIASFLSFNLPANSQNCIPIPVVGGEGNEVTKSIAQPTIPGPFGISITRNNWNTDWAVPGGQSFKYFLVTLTTERGGRFNVRMNLKYSDNTADEFFNERGLRLNAGEVLREQGVPRPNDMPFQVNVYVGGIDNIGSRYTVSAVGCR
>NC_011729.1|WP_015954607.1|2872163_2873468_+|glutamate-5-semialdehyde-dehydrogenase
MVATSVSSSHLVQIAQKTRCEARKLAVLSTIERNEALEAIAQGLESAIPEILAANETDCQVAQTEKISQALYARLKLGETKLKAAIAGVRDVAKLADPVGAVQIHRELDHDLILKRLTCPLGVLGVIFEARPDALIQITSLAIKSGNGVILKGGKEALRSCQTLVKIIHQALSRTKVNPDVVQLLTTREEIKALLTLDEYVDLIIPRGSNSFVRYVQENTRIPVLGHADGICHLYIDRAADLDKAISITIDAKTQYPAACNAIETLLIHQDIAETFLPKIVEALQAKGVKLRGDELTQKFVKIKAATAEDWSTEYSDLILSIKVVDSLNSAINHINRYGSRHTEAIVTEDGETAQTFLNQVDAAGVYHNCSTRFADGFRYGFGAEVGISTQKMPPRGPVGLEGLVTYKYQITGDGHIADTYSGKDAKPFTHKDL
>NC_011729.1|WP_015954608.1|2873505_2873904_-|hypothetical-protein
MTLISNPENYKKLLFQYQSQPITTEEDNEKALAIVEELMHRKNRSLEENELYDLLIVLIEKFEQEFYYTQNSNPYSMLLFLMEQQGITKTELGKVFESLEIAADLVEGKREITQEYAQILGRFFQVEPSLFI

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Crispr_ID: NC_011729_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_22

2963414-2963520

Orphan

N:A

Consensus_repeat	Method
ATGTCTTCAGGAGGAGATACTATTTCTGGTTCGATTAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_22

>merge|NC_011729|22|2963414-2963520|CRISPRCasFinder
ATGTCTTCAGGAGGAGATACTATTTCTGGTTCGATTAAATCGAGCGAAAAAGTTTCGGGTTGCTCGATGTCTCCAGGAGGAGATACTATTTCTGGTTCGATTAAATC

>NC_011729|22|20|2963414-2963520|CRISPRCasFinder
ATGTCTTCAGGAGGAGATACTATTTCTGGTTCGATTAAATC	GAGCGAAAAAGTTTCGGGTTGCTCG
ATGTCTCCAGGAGGAGATACTATTTCTGGTTCGATTAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954686.1\|2955817_2956072_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954685.1\|2954758_2955706_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_011729.1\|WP_015954689.1\|2960138_2961479_-\|patatin	unknown	unknown	gnl\|CDD\|132856
NC_011729.1\|WP_015954696.1\|2969027_2969672_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015954698.1\|2971322_2971655_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954687.1\|2956620_2957724_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340832
NC_011729.1\|WP_015954697.1\|2969748_2971140_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238520
NC_011729.1\|WP_015954682.1\|2953101_2953326_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NC_011729.1\|WP_015954695.1\|2968725_2969013_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954693.1\|2966019_2967351_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|215171
NC_011729.1\|WP_015954700.1\|2972341_2972929_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_011729.1\|WP_015954699.1\|2971881_2972289_+\|DUF1622-domain-containing-protein	unknown	unknown	gnl\|CDD\|377914
NC_011729.1\|WP_015954683.1\|2953329_2953539_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NC_011729.1\|WP_015954684.1\|2953684_2954746_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|215237
NC_011729.1\|WP_015954688.1\|2957839_2960065_+\|amylo-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|225942
NC_011729.1\|WP_015954680.1\|2951608_2952040_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954691.1\|2964442_2965150_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_011729.1\|WP_015954681.1\|2952196_2953087_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|224534
NC_011729.1\|WP_015954694.1\|2967411_2968524_+\|TIGR00303-family-protein	unknown	unknown	gnl\|CDD\|235300
NC_011729.1\|WP_015954692.1\|2965207_2966017_+\|DUF2232-domain-containing-protein	unknown	unknown	gnl\|CDD\|226692

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954693.1\|2966019_2967351_-\|cytochrome-P450	gnl\|CDD\|215171	PLN02302, PLN02302, ent-kaurenoic acid oxidase.	6.29649e-89
NC_011729.1\|WP_015954685.1\|2954758_2955706_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	9.92338e-25
NC_011729.1\|WP_015954689.1\|2960138_2961479_-\|patatin	gnl\|CDD\|132856	cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.	1.4376e-87
NC_011729.1\|WP_015954696.1\|2969027_2969672_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.22003e-13
NC_011729.1\|WP_015954687.1\|2956620_2957724_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340832	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.	3.54996e-137
NC_011729.1\|WP_015954697.1\|2969748_2971140_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	2.05687e-96
NC_011729.1\|WP_015954682.1\|2953101_2953326_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	2.00577e-24
NC_011729.1\|WP_015954700.1\|2972341_2972929_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	8.55073e-20
NC_011729.1\|WP_015954699.1\|2971881_2972289_+\|DUF1622-domain-containing-protein	gnl\|CDD\|377914	pfam07784, DUF1622, Protein of unknown function (DUF1622). This is a family of 14 highly conserved sequences, from hypothetical proteins expressed by both bacterial and archaeal species.	5.05073e-28
NC_011729.1\|WP_015954683.1\|2953329_2953539_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	5.18315e-10
NC_011729.1\|WP_015954684.1\|2953684_2954746_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|215237	PLN02433, PLN02433, uroporphyrinogen decarboxylase.	0
NC_011729.1\|WP_015954688.1\|2957839_2960065_+\|amylo-alpha-1,6-glucosidase	gnl\|CDD\|225942	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism].	8.32685e-133
NC_011729.1\|WP_015954691.1\|2964442_2965150_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.92933e-44
NC_011729.1\|WP_015954681.1\|2952196_2953087_+\|LD-carboxypeptidase	gnl\|CDD\|224534	COG1619, LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms].	7.41573e-101
NC_011729.1\|WP_015954694.1\|2967411_2968524_+\|TIGR00303-family-protein	gnl\|CDD\|235300	PRK04447, PRK04447, hypothetical protein; Provisional.	7.788e-175
NC_011729.1\|WP_015954692.1\|2965207_2966017_+\|DUF2232-domain-containing-protein	gnl\|CDD\|226692	COG4241, COG4241, Predicted membrane protein [Function unknown].	3.57259e-42

>NC_011729.1|WP_015954689.1|2960138_2961479_-|patatin
MTVKRLLSIDGGGIRGIIAAEVLVAIEKALKENKQCERLSDYFDFISGTSTGSIIAAGLAIGMSAQEILNIYTTKGKQIFSSNNNQYSKQDIIEALGIKKEWGKQLFVKGLLKLFKGQQEALKQKLFTRYTGEYLEKELSDVFGDITMTSPNGLKTNLMIVTNNVTQGEVWFFTNNSVKGTGTYNEKSKYLNLYENIPLWKIVRSSCAAPTFFPPFSITVKVPNQSSTTKYEEKECEFIDGAISPYNNPSFQLFLEAVHPDYNTGWETGVDKILLVSVGTGYAYTKIESGKAKESNNAVWGQYVIEDLMSQVNRQQNHFMKLVSQQKMSNNSSNFLNKINKFKIVPEKKELFTYCRFTTSFTVDRFKQLMKDNFLQLKDENKKLILAEDITNINKVVNNLKKMDCVDQIDNLSAIGQAVAQEQFDISLFPDLSKDENVSNESSKNE
>NC_011729.1|WP_015954688.1|2957839_2960065_+|amylo-alpha-1,6-glucosidase
MSEFLEFDGKTFIHAEAATMPEWPCVKQEPIYPTLTLKDDDLFLITDSLGNILGCWPSDQPESSLGLFCRDTRFLSRLELQIDGKLPNLLSSNARRGFALSVLCANPYLEKTKIQAETIGIQREIVLNGGLFEELTLTNYSTHSVSFELSLSFDADFVDLFEIRGWERSQRGKLLRLKEQDPETDQESKELILAYQGLDNSLVESRIQFSYEQPDLSQGKTAIWQIELNSHQTIKLGYRIQLLMNSHPASKVGIPMTLMQAKSAEAMELQEWQHQVTQIRTDNKALNLAIEQAEQDIFLLRQSFGHGKVLSAGVPWFSTLFGRDSIIAAWQSLIFDPQIAKNTLMVLAEYQGKTYDEWREEEPGKILHEIRLGEMARCHEVPHTPYYGTIDATPLWLILYCQYYAWTGDQETIDKLWPNALAAMKWIDRNSEKTGYLSYIRHSAGGLTNQGWKDSGDCIVDSHGHLAKPPITLCEVQGYVYAAKMQMSELAKLMQHDDLSQQWLKQAQELKIRFNRDFWLPNLGFCALALDGDGKPVDSITSNPGHCLSLGIFELDKANSVAERLCGPDMFSGWGIRTLSSWSPAYNPMGYHIGSVWPHDNGIIALGLRSLGLIEQALEVAQGILDMTLEQPYQRPPELFCGYERTEENSPVRYPVACSPQAWATGTIFQLLEVMINIVPDVPNNCVRISDPFLPESINNLSLHNLRIGTTLLDLEFQRSGTTTACRVAKKRGNLRVVFEA
>NC_011729.1|WP_015954687.1|2956620_2957724_+|glycosyltransferase-family-4-protein
MRIAQIAPLWERVPPLGYGGIELIVGLLTDELVRRGHEVTLFASGDSQTLAQLEPICPQALRKLDENTTPHHLHNIYQTLQLNKILEQVNKFDLIHSHIGFPLFPYANLIKIPTVHTIHGIIPSAEETLWHSVKQQNFISISNAQRRHDLELNYVATVYNAINTKIFPVSNPDNPPYLAFLGRLSPEKGPHLAIDIAKQTGLPLKMAGKVDAVDRQFFEEQIKPFIDGKQIQFLGEADHQMKCELMGRAIATLFPITWPEPFGLVMIESMILGTPVIAMEMGSTREVIADGKTGFLCHTVEDCVTAVKQLETISRQDCRDHVMNKFSVQHMVDGYESVYQKLLQEKFIEDGQTRHLQHLKTLNLLSA
>NC_011729.1|WP_015954686.1|2955817_2956072_-|hypothetical-protein
MSHQIQSKIAPQGYFRCHPGDKVIWFVADHPLPIPSPNSVAAFMVCEAKTPQLAQDLVQQLNDTINYTELSANMTPFERFFAFL
>NC_011729.1|WP_015954685.1|2954758_2955706_+|NAD(P)-dependent-oxidoreductase
MKRIFITGASGCIGHYLAEALIEETDHELFFLVRNPDKLKFNYHHRDGLHLLKGDLQEIEQYSDLLKTIDVAILAATTWGGIEETNQINVIKTLALIKLLDPQRCEQVLYFSTASILNQNNEPLREAGEIGTTYIRSKYDCYTQLSQLEISPKITTLFPTLVLGGDENKPYSHLYEGLPEVLKWIDLIRWFKADGSFHFIHAKDIAQVVKYLVEHPLTSEKTIVLGNQRTTVNEAIKKISGYLHKKIYFQIALSIGLANVFIKLFQLKMQDWDRFSLDYRHFTHKKTFTPASFGLNNYCSTLEEALKLRGIVSKQ
>NC_011729.1|WP_015954684.1|2953684_2954746_+|uroporphyrinogen-decarboxylase
MSQSAEIPYLLRAARGEVLDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENADLAIEISLQPWRAFQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQQQIDHLHPFDPDQTVPFVKTILKTLRQEVGNQSTVLGFVGAPWTLAAYAVEGKSSKTYSIIKSMAFSEPAILHQLLSKLADMVASYVRYQIDCGAQVVQMFDSWAGQLTPQDYDVFALPYQQQVVRQVKETHPDTPLILYISGSAGVLERMGKSGVDMISVDWTVDMAEARQRLGKEMKVQGNIDPGVLFGSQSFIRDRIVDTIRKAGNQGHILNLGHGVLVGTPEDNVRFFFETAKNADQLLVHA
>NC_011729.1|WP_015954683.1|2953329_2953539_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKLFTAVIERDIETKLYVGYVPGFPGAHSQGETLDELQQNLIEVIEMLLEDTEPVLKTEFVGTQQIVLS
>NC_011729.1|WP_015954682.1|2953101_2953326_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MSNIPVLKPFEVVRILENLGFVEVRQKGSHKQFRHEDGRGTTVPFHQGRDIAPTLLRKIASDIDLTVEEMLEAR
>NC_011729.1|WP_015954681.1|2952196_2953087_+|LD-carboxypeptidase
MQLPDPLKPGDLVKVVTPSGALREIEAFSQGVDIWRSRGYQVEFTSHWDSHFGYLGGEDNQRRQALSEAWLDPNCKAILCTRGGYGSARLLEKWTWELSTSPKWVIGFSDITGLLWSLATVGISGVHGPVLTTLASEPEWSIERLFDWVEGRPLSPLSGEGWGGGQVIGDLLPANLTVATHLLGTSLQPELKGVILALEDVTEAPYRIDRMLTQWRLMGLLEKVGGIALGRFSRCQAPVGSSSWTVEEVLRDRLGDLNIPIVGDLPFGHDGVNAVLPVGHRVRLDGDEGKLEFLSQ
>NC_011729.1|WP_015954680.1|2951608_2952040_-|hypothetical-protein
MLNKSQNRLNLSHSFAVIVSTIILGFSSSVMAQSDQVSDQLLDRANQMNQDLPKMIDPDTRLDSTQGGPGRQLSYNFTLVNYASNQIDGQRFSQKVMPVIKNQACTNASVQSLFNNRVSIRFNYYGNDGRLISTIQVNSTDCF
>NC_011729.1|WP_015954691.1|2964442_2965150_+|Crp/Fnr-family-transcriptional-regulator
MEEKKDNYDRRIDNEQLINTIALFEGLSEQSLDLISAHAVTRAHPANRVILLENDWGGSVYFILEGWVKIRTYNVDGKEVTLNIVGKGEVVGEMAALEEAPRSTDVITLTKTVISSIPAQDFVKLLMAEPLAGIRLSQLMAKRLRQLNRRLRLREADSLSRVADTLIFLAEGQGKKAEQGIEIPNLPHRELSSISGLARETVTRSLTKLEKKGLIQRTADTVCIPDLKSLERVIT
>NC_011729.1|WP_015954692.1|2965207_2966017_+|DUF2232-domain-containing-protein
MNNFSDDLNSFCPPGSGDTNSQNLASNGDSLADDSNWVDDEVNPSQNTTSQSLKSPLNSNPPLKVSPTLVTVETAFLASAASLIWLINYYFPFGPLLKIFFPIPMALVYLRWGKRASWMTAIVSGLLLSVLMGPTRSIVFLIPYGVMGVQLGACWKRGAPWQWSMLLGTIIGVFGLFFRIWLFSILLGEDLWLYAITQATAFLDWAFMKLGLLIEPTVLMIQSIAIIAIIINNLLYLFAVHLIALLVLDRLGNPIPRPPSWIGTIIDYE
>NC_011729.1|WP_015954693.1|2966019_2967351_-|cytochrome-P450
MKEKSLPPGNLGLPIIGETISFLNDSDFASKRHQKYGSVFKTRIFGRPTIFVSGADAVRFVLTHENKYFASTWPKSTRTLLGPASLSVNTGEFHTSRRKIMFQAFQPRALASYIPTIERITDDYLAKWETMETFQWYPELRNYTFDIASSLFVGIENGSQTRLGELFEDWCAGLFSLPLPFPWTAFGKALRCRDGLLEEIETIIKQRQQQDNFGNDALGILLTATDEKGNKLSLEELKDQILLLLFAGHETLTSALASFCLFTVQYPQVSTEIKKEIERLQIGTSVTLEELKQMEYLEQVLKEVLRFVPPVGGGFREAVVDCELEGYLIPKGWIVQYQIRRTHRDTTVYNEPQQFDPSRFNNNRAEDKQKTFAYVPFGGGLRECLGKEFARLEMRIFASRLVKDYQWNLIPNQDLSMTATPTPHPRDGLKVNFHRLKSEVKVN
>NC_011729.1|WP_015954694.1|2967411_2968524_+|TIGR00303-family-protein
MISIYTQPTLAQAWLQKYQGSCPIFALILGYTQTGLIPGISAAGATPQDRQYTAIADAEFLVKGCVKTPQYPLPPLNVGVSPVYISRAVIEAFNIPIYLFNAGLPDPPSVPFIDLEGIPAHCLSSGQALPLDKVYHLYTQGVKWGEKLALIAPKSYLMIGECVVGGTTTALAVLRGLGVDAAGKVNSSHPQCNHAQKWSVVQLGLQKLGTLSDIDPFRLVAAVGDPMQIVAAGMAIAASRTIGVMLAGGTQMLAVYALIKSIISHFQERANLSQLVVGTTRWVAEDKSGDTIGLAQLIPNVPLLATQLNLNQSRYPQLQVYEQGYVKEGVGAGGCAIASYLYQGWTQQQLLNAIESLIAQSVEIKIEHNS
>NC_011729.1|WP_015954695.1|2968725_2969013_+|hypothetical-protein
MTPEERLTQAEKLLETAARYIDRHEQMFEQSAAEMSQLRTSFNEVLQLFSELATYQRQQQEELRQHREQFRQQQEDIRRIWEYLLRQSGNGSSEN
>NC_011729.1|WP_015954696.1|2969027_2969672_+|Uma2-family-endonuclease
MVTLQFKQISIPPGQRVLLQNISWGEFEGILSELGEHRAIRLSYYQGILELRMPLPEHEVNKEIIGDMVKILLEELEIDRECFGSTTFKREDMPAGIEPDNCFYIKNYRVMIGKKRIDLRVDPPPDLAIEVDLISKTQLAAYEALGVSELWRYENEQLHINVLQEGKYIESSMSSIFPNIPVREGISQFLKASSIEGTSAALRGFRKWVTEMIN
>NC_011729.1|WP_015954697.1|2969748_2971140_+|aminopeptidase-P-family-protein
MQLLEKNSTLSQTLKQRREKLAQLIETPAIFWSGIAPSRNFPANRYSFRANSHFLYFAGLPLENAAIRLEKGKLDLFMDDSSPDSALWHGELPKRDEIAAFMGADRAYPLSELPAYTAHAATIAVGDSKTYQQQCQLLNRIISPANAPQGIDLDLAKAVITLRLTHDRTALSELRQAASVSVKAHIAGMQATLKAKTEAEIRGAMEGVILSHNMQCAYNSIVTVHGEVLHNEHYGHDLHPNDLLLADVGAETENGWASDITRTWPVKGKFSSTQRDIYDLVLAAHDACIEKIRPGVEYQEIHLLACFIIAQGLIELGILKGDPTNLVEMDAHALFFPHGIGHLLGLDVHDMEDLGDLAGYERGRTRSDRFGLGYLRLNRPLHSGMLVTIEPGFYQVPAILNHRELRAKYEKVVNWSRLSEFADVRGIRIEDDVFVTEFGAEVLTASLPNKAQDIENLVSQPRD
>NC_011729.1|WP_015954698.1|2971322_2971655_+|hypothetical-protein
MSEFYESLLKHNYAYVAIGEFKPGCFGEAQRLYEKAVSTFSKGFKGAFLLQKPGTDQGIAVIIWDKIEDMEAHKTEAYDAIMNQMNPLFASPPQIDFYEVCSEISGDEKA
>NC_011729.1|WP_015954699.1|2971881_2972289_+|DUF1622-domain-containing-protein
MSLQLLVRTLNGYTVSLCQFLALIVIVSGVIKAIIIYGRNIFSTPQSKVFQASRLSMGYSFSLGLSFLIGASILKSTIAPTWNDIGQLAAIISLRTVLNYLLLQAIKGDTESHSSPEFTDNNATQKDKLIPQQVD
>NC_011729.1|WP_015954700.1|2972341_2972929_-|rhomboid-family-intramembrane-serine-protease
MSLKDNSLSRQLKTQGIILGSFVAIFWVLEFIDQVIFRGRLDVYGIIPHRLIGLRGILFAPFLHGSFGHLIANTVPFVILGWLVMIQETSDFWIVTLVTMIVGGVGVWIFATPGSIHIGSSILIFGYLGFLLARGYFQRNLASIIISVIVGLLYGGLVWGVLPSAPGISWQGHLFGFIGGVITARLIAKEKQYYR

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Crispr_ID: NC_011729_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_23

2968615-2968723

Orphan

N:A

Consensus_repeat	Method
TGCCCACCTTAACCCCAGTAACTCCTATTAACATCACAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_23

>merge|NC_011729|23|2968615-2968723|CRISPRCasFinder
TGCCCACCTTAACCCCAGTAACTCCTATTAACATCACAAAAATAAGACACTAATTGTAGGGTGGGCAATGCCCACCTTAACCTCAGTAACTCCTATTAACATCACAAAA

>NC_011729|23|21|2968615-2968723|CRISPRCasFinder
TGCCCACCTTAACCCCAGTAACTCCTATTAACATCACAAAA	ATAAGACACTAATTGTAGGGTGGGCAA
TGCCCACCTTAACCTCAGTAACTCCTATTAACATCACAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954693.1\|2966019_2967351_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|215171
NC_011729.1\|WP_015954686.1\|2955817_2956072_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954689.1\|2960138_2961479_-\|patatin	unknown	unknown	gnl\|CDD\|132856
NC_011729.1\|WP_015954696.1\|2969027_2969672_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015954698.1\|2971322_2971655_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954685.1\|2954758_2955706_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_011729.1\|WP_015954687.1\|2956620_2957724_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340832
NC_011729.1\|WP_015954691.1\|2964442_2965150_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_011729.1\|WP_015954695.1\|2968725_2969013_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954701.1\|2972947_2973142_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954700.1\|2972341_2972929_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_011729.1\|WP_015954702.1\|2973213_2974515_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NC_011729.1\|WP_015954699.1\|2971881_2972289_+\|DUF1622-domain-containing-protein	unknown	unknown	gnl\|CDD\|377914
NC_011729.1\|WP_015954703.1\|2974804_2976112_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_011729.1\|WP_015954690.1\|2962188_2964321_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|234714
NC_011729.1\|WP_015954688.1\|2957839_2960065_+\|amylo-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|225942
NC_011729.1\|WP_015954697.1\|2969748_2971140_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238520
NC_011729.1\|WP_015954694.1\|2967411_2968524_+\|TIGR00303-family-protein	unknown	unknown	gnl\|CDD\|235300
NC_011729.1\|WP_015954692.1\|2965207_2966017_+\|DUF2232-domain-containing-protein	unknown	unknown	gnl\|CDD\|226692
NC_011729.1\|WP_015954704.1\|2976579_2977908_-\|GAF-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954693.1\|2966019_2967351_-\|cytochrome-P450	gnl\|CDD\|215171	PLN02302, PLN02302, ent-kaurenoic acid oxidase.	6.29649e-89
NC_011729.1\|WP_015954685.1\|2954758_2955706_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	9.92338e-25
NC_011729.1\|WP_015954689.1\|2960138_2961479_-\|patatin	gnl\|CDD\|132856	cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.	1.4376e-87
NC_011729.1\|WP_015954696.1\|2969027_2969672_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.22003e-13
NC_011729.1\|WP_015954687.1\|2956620_2957724_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340832	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.	3.54996e-137
NC_011729.1\|WP_015954691.1\|2964442_2965150_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.92933e-44
NC_011729.1\|WP_015954700.1\|2972341_2972929_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	8.55073e-20
NC_011729.1\|WP_015954702.1\|2973213_2974515_+\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_011729.1\|WP_015954699.1\|2971881_2972289_+\|DUF1622-domain-containing-protein	gnl\|CDD\|377914	pfam07784, DUF1622, Protein of unknown function (DUF1622). This is a family of 14 highly conserved sequences, from hypothetical proteins expressed by both bacterial and archaeal species.	5.05073e-28
NC_011729.1\|WP_015954703.1\|2974804_2976112_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.46206e-66
NC_011729.1\|WP_015954690.1\|2962188_2964321_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	4.41753e-05
NC_011729.1\|WP_015954688.1\|2957839_2960065_+\|amylo-alpha-1,6-glucosidase	gnl\|CDD\|225942	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism].	8.32685e-133
NC_011729.1\|WP_015954697.1\|2969748_2971140_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	2.05687e-96
NC_011729.1\|WP_015954694.1\|2967411_2968524_+\|TIGR00303-family-protein	gnl\|CDD\|235300	PRK04447, PRK04447, hypothetical protein; Provisional.	7.788e-175
NC_011729.1\|WP_015954692.1\|2965207_2966017_+\|DUF2232-domain-containing-protein	gnl\|CDD\|226692	COG4241, COG4241, Predicted membrane protein [Function unknown].	3.57259e-42
NC_011729.1\|WP_015954704.1\|2976579_2977908_-\|GAF-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.79603e-39

>NC_011729.1|WP_015954694.1|2967411_2968524_+|TIGR00303-family-protein
MISIYTQPTLAQAWLQKYQGSCPIFALILGYTQTGLIPGISAAGATPQDRQYTAIADAEFLVKGCVKTPQYPLPPLNVGVSPVYISRAVIEAFNIPIYLFNAGLPDPPSVPFIDLEGIPAHCLSSGQALPLDKVYHLYTQGVKWGEKLALIAPKSYLMIGECVVGGTTTALAVLRGLGVDAAGKVNSSHPQCNHAQKWSVVQLGLQKLGTLSDIDPFRLVAAVGDPMQIVAAGMAIAASRTIGVMLAGGTQMLAVYALIKSIISHFQERANLSQLVVGTTRWVAEDKSGDTIGLAQLIPNVPLLATQLNLNQSRYPQLQVYEQGYVKEGVGAGGCAIASYLYQGWTQQQLLNAIESLIAQSVEIKIEHNS
>NC_011729.1|WP_015954693.1|2966019_2967351_-|cytochrome-P450
MKEKSLPPGNLGLPIIGETISFLNDSDFASKRHQKYGSVFKTRIFGRPTIFVSGADAVRFVLTHENKYFASTWPKSTRTLLGPASLSVNTGEFHTSRRKIMFQAFQPRALASYIPTIERITDDYLAKWETMETFQWYPELRNYTFDIASSLFVGIENGSQTRLGELFEDWCAGLFSLPLPFPWTAFGKALRCRDGLLEEIETIIKQRQQQDNFGNDALGILLTATDEKGNKLSLEELKDQILLLLFAGHETLTSALASFCLFTVQYPQVSTEIKKEIERLQIGTSVTLEELKQMEYLEQVLKEVLRFVPPVGGGFREAVVDCELEGYLIPKGWIVQYQIRRTHRDTTVYNEPQQFDPSRFNNNRAEDKQKTFAYVPFGGGLRECLGKEFARLEMRIFASRLVKDYQWNLIPNQDLSMTATPTPHPRDGLKVNFHRLKSEVKVN
>NC_011729.1|WP_015954692.1|2965207_2966017_+|DUF2232-domain-containing-protein
MNNFSDDLNSFCPPGSGDTNSQNLASNGDSLADDSNWVDDEVNPSQNTTSQSLKSPLNSNPPLKVSPTLVTVETAFLASAASLIWLINYYFPFGPLLKIFFPIPMALVYLRWGKRASWMTAIVSGLLLSVLMGPTRSIVFLIPYGVMGVQLGACWKRGAPWQWSMLLGTIIGVFGLFFRIWLFSILLGEDLWLYAITQATAFLDWAFMKLGLLIEPTVLMIQSIAIIAIIINNLLYLFAVHLIALLVLDRLGNPIPRPPSWIGTIIDYE
>NC_011729.1|WP_015954691.1|2964442_2965150_+|Crp/Fnr-family-transcriptional-regulator
MEEKKDNYDRRIDNEQLINTIALFEGLSEQSLDLISAHAVTRAHPANRVILLENDWGGSVYFILEGWVKIRTYNVDGKEVTLNIVGKGEVVGEMAALEEAPRSTDVITLTKTVISSIPAQDFVKLLMAEPLAGIRLSQLMAKRLRQLNRRLRLREADSLSRVADTLIFLAEGQGKKAEQGIEIPNLPHRELSSISGLARETVTRSLTKLEKKGLIQRTADTVCIPDLKSLERVIT
>NC_011729.1|WP_015954690.1|2962188_2964321_-|nucleotide-exchange-factor-GrpE
MTTEQLHSLITDLDRFLAGENSRLSWSTSDYWEEREQTRQLLLRVRAYLVTTASQSPNIPTVGAEITPLSEQWVEQMTSTMIAQINQQLAGWFDSLRTELDELRNSRESLTQEIQSLQQQYQRMIADFIQLLMKRSQDILQQQIHQTQETIAQQLKLESSALIYPSKVLEQLIQLQQHSDQLLTDLDTTFRTVFETLEQDLQAYSQSLSKGLERMHNLGQQGEAKLLAYTNRLTDQLEQSSVISPAVDLPITPQPNAPEIETIHRLTDLIEPEIVSPPGDIEQPETFSLDLIEPEIVSPPEDIEPPESLSLDGWYLGIDFGSDSLAAVLSKTNLTTTEENLIEEYPLYWSSGEASSFRLPINSYSSFELESLKSQLTKLDSLPDNIWFKLITLFSIFNLNNTDVSENLKVMTHDLEQSALDSALQDLKGVIFSSPTDWKTTYQSQLKKAMLATHLVEDENQIFFLEEAIATFLAHLPLGTNSELSRSETVTLVINSGATSTDIALVIPPNPLETLSYDDFLLTQLAYGGNTLEQDIFCQLIYPQWMTQLNPPLTQFPGIVPQPGKPEPDKREQLKQCLERHPIGNSFIEAAKLAKLILQQQNSFTSQLGGQSWTLQRHDLEKIIIRPFLDSLEEQIQYLLSQKNLTFDDIEQVILSGGTILSLWYSLSNWINEKFPQGICFHDSETEILTKVAIGLGRFPLFPNLVKTLN
>NC_011729.1|WP_015954689.1|2960138_2961479_-|patatin
MTVKRLLSIDGGGIRGIIAAEVLVAIEKALKENKQCERLSDYFDFISGTSTGSIIAAGLAIGMSAQEILNIYTTKGKQIFSSNNNQYSKQDIIEALGIKKEWGKQLFVKGLLKLFKGQQEALKQKLFTRYTGEYLEKELSDVFGDITMTSPNGLKTNLMIVTNNVTQGEVWFFTNNSVKGTGTYNEKSKYLNLYENIPLWKIVRSSCAAPTFFPPFSITVKVPNQSSTTKYEEKECEFIDGAISPYNNPSFQLFLEAVHPDYNTGWETGVDKILLVSVGTGYAYTKIESGKAKESNNAVWGQYVIEDLMSQVNRQQNHFMKLVSQQKMSNNSSNFLNKINKFKIVPEKKELFTYCRFTTSFTVDRFKQLMKDNFLQLKDENKKLILAEDITNINKVVNNLKKMDCVDQIDNLSAIGQAVAQEQFDISLFPDLSKDENVSNESSKNE
>NC_011729.1|WP_015954688.1|2957839_2960065_+|amylo-alpha-1,6-glucosidase
MSEFLEFDGKTFIHAEAATMPEWPCVKQEPIYPTLTLKDDDLFLITDSLGNILGCWPSDQPESSLGLFCRDTRFLSRLELQIDGKLPNLLSSNARRGFALSVLCANPYLEKTKIQAETIGIQREIVLNGGLFEELTLTNYSTHSVSFELSLSFDADFVDLFEIRGWERSQRGKLLRLKEQDPETDQESKELILAYQGLDNSLVESRIQFSYEQPDLSQGKTAIWQIELNSHQTIKLGYRIQLLMNSHPASKVGIPMTLMQAKSAEAMELQEWQHQVTQIRTDNKALNLAIEQAEQDIFLLRQSFGHGKVLSAGVPWFSTLFGRDSIIAAWQSLIFDPQIAKNTLMVLAEYQGKTYDEWREEEPGKILHEIRLGEMARCHEVPHTPYYGTIDATPLWLILYCQYYAWTGDQETIDKLWPNALAAMKWIDRNSEKTGYLSYIRHSAGGLTNQGWKDSGDCIVDSHGHLAKPPITLCEVQGYVYAAKMQMSELAKLMQHDDLSQQWLKQAQELKIRFNRDFWLPNLGFCALALDGDGKPVDSITSNPGHCLSLGIFELDKANSVAERLCGPDMFSGWGIRTLSSWSPAYNPMGYHIGSVWPHDNGIIALGLRSLGLIEQALEVAQGILDMTLEQPYQRPPELFCGYERTEENSPVRYPVACSPQAWATGTIFQLLEVMINIVPDVPNNCVRISDPFLPESINNLSLHNLRIGTTLLDLEFQRSGTTTACRVAKKRGNLRVVFEA
>NC_011729.1|WP_015954687.1|2956620_2957724_+|glycosyltransferase-family-4-protein
MRIAQIAPLWERVPPLGYGGIELIVGLLTDELVRRGHEVTLFASGDSQTLAQLEPICPQALRKLDENTTPHHLHNIYQTLQLNKILEQVNKFDLIHSHIGFPLFPYANLIKIPTVHTIHGIIPSAEETLWHSVKQQNFISISNAQRRHDLELNYVATVYNAINTKIFPVSNPDNPPYLAFLGRLSPEKGPHLAIDIAKQTGLPLKMAGKVDAVDRQFFEEQIKPFIDGKQIQFLGEADHQMKCELMGRAIATLFPITWPEPFGLVMIESMILGTPVIAMEMGSTREVIADGKTGFLCHTVEDCVTAVKQLETISRQDCRDHVMNKFSVQHMVDGYESVYQKLLQEKFIEDGQTRHLQHLKTLNLLSA
>NC_011729.1|WP_015954686.1|2955817_2956072_-|hypothetical-protein
MSHQIQSKIAPQGYFRCHPGDKVIWFVADHPLPIPSPNSVAAFMVCEAKTPQLAQDLVQQLNDTINYTELSANMTPFERFFAFL
>NC_011729.1|WP_015954685.1|2954758_2955706_+|NAD(P)-dependent-oxidoreductase
MKRIFITGASGCIGHYLAEALIEETDHELFFLVRNPDKLKFNYHHRDGLHLLKGDLQEIEQYSDLLKTIDVAILAATTWGGIEETNQINVIKTLALIKLLDPQRCEQVLYFSTASILNQNNEPLREAGEIGTTYIRSKYDCYTQLSQLEISPKITTLFPTLVLGGDENKPYSHLYEGLPEVLKWIDLIRWFKADGSFHFIHAKDIAQVVKYLVEHPLTSEKTIVLGNQRTTVNEAIKKISGYLHKKIYFQIALSIGLANVFIKLFQLKMQDWDRFSLDYRHFTHKKTFTPASFGLNNYCSTLEEALKLRGIVSKQ
>NC_011729.1|WP_015954695.1|2968725_2969013_+|hypothetical-protein
MTPEERLTQAEKLLETAARYIDRHEQMFEQSAAEMSQLRTSFNEVLQLFSELATYQRQQQEELRQHREQFRQQQEDIRRIWEYLLRQSGNGSSEN
>NC_011729.1|WP_015954696.1|2969027_2969672_+|Uma2-family-endonuclease
MVTLQFKQISIPPGQRVLLQNISWGEFEGILSELGEHRAIRLSYYQGILELRMPLPEHEVNKEIIGDMVKILLEELEIDRECFGSTTFKREDMPAGIEPDNCFYIKNYRVMIGKKRIDLRVDPPPDLAIEVDLISKTQLAAYEALGVSELWRYENEQLHINVLQEGKYIESSMSSIFPNIPVREGISQFLKASSIEGTSAALRGFRKWVTEMIN
>NC_011729.1|WP_015954697.1|2969748_2971140_+|aminopeptidase-P-family-protein
MQLLEKNSTLSQTLKQRREKLAQLIETPAIFWSGIAPSRNFPANRYSFRANSHFLYFAGLPLENAAIRLEKGKLDLFMDDSSPDSALWHGELPKRDEIAAFMGADRAYPLSELPAYTAHAATIAVGDSKTYQQQCQLLNRIISPANAPQGIDLDLAKAVITLRLTHDRTALSELRQAASVSVKAHIAGMQATLKAKTEAEIRGAMEGVILSHNMQCAYNSIVTVHGEVLHNEHYGHDLHPNDLLLADVGAETENGWASDITRTWPVKGKFSSTQRDIYDLVLAAHDACIEKIRPGVEYQEIHLLACFIIAQGLIELGILKGDPTNLVEMDAHALFFPHGIGHLLGLDVHDMEDLGDLAGYERGRTRSDRFGLGYLRLNRPLHSGMLVTIEPGFYQVPAILNHRELRAKYEKVVNWSRLSEFADVRGIRIEDDVFVTEFGAEVLTASLPNKAQDIENLVSQPRD
>NC_011729.1|WP_015954698.1|2971322_2971655_+|hypothetical-protein
MSEFYESLLKHNYAYVAIGEFKPGCFGEAQRLYEKAVSTFSKGFKGAFLLQKPGTDQGIAVIIWDKIEDMEAHKTEAYDAIMNQMNPLFASPPQIDFYEVCSEISGDEKA
>NC_011729.1|WP_015954699.1|2971881_2972289_+|DUF1622-domain-containing-protein
MSLQLLVRTLNGYTVSLCQFLALIVIVSGVIKAIIIYGRNIFSTPQSKVFQASRLSMGYSFSLGLSFLIGASILKSTIAPTWNDIGQLAAIISLRTVLNYLLLQAIKGDTESHSSPEFTDNNATQKDKLIPQQVD
>NC_011729.1|WP_015954700.1|2972341_2972929_-|rhomboid-family-intramembrane-serine-protease
MSLKDNSLSRQLKTQGIILGSFVAIFWVLEFIDQVIFRGRLDVYGIIPHRLIGLRGILFAPFLHGSFGHLIANTVPFVILGWLVMIQETSDFWIVTLVTMIVGGVGVWIFATPGSIHIGSSILIFGYLGFLLARGYFQRNLASIIISVIVGLLYGGLVWGVLPSAPGISWQGHLFGFIGGVITARLIAKEKQYYR
>NC_011729.1|WP_015954701.1|2972947_2973142_-|hypothetical-protein
MGVWGEGGVWGGWGVWGVWGEGREGGVWGVSSLLPVALFACCLKPKTLYLTNMRTVLKATMERT
>NC_011729.1|WP_015954702.1|2973213_2974515_+|histidinol-dehydrogenase
MVRILKLAQMSASELATLKKRAELDIDNALSIAKTVIDKIKQDGDTGVIEYVRKFDYPEATVDTIKVTPQEFAQAHELIEPDVKTAIEQSFKNIKEVHQRQMPEEIQLAEIEKGVFAGEKISPLPSAGLYVPRGRGAFPSMMLMLAIPAQVAGVKNIVVCTPPDKQGKVEPASLVAASMAGVTEIYKLGGVQAIAAMALGTQSIPKVDKVTGPCSVYGAAAKRLLFGTVDVGLPAGPSESIILADESTNPQLAALDLLIEAEHGSDSAALLVTHSETVAEKASRYVDEYLEKLPQWRRQYCEDGLSAYGGIILTSSLEESLNFINDYAPEHLEVLVKDPFNVIGQIHNAGEILLGSHTPSSMATYAIGVNAVLPTGGFARSYSAVSVFDFLKRSTLAYVTPDGFETLKQTTITLADYEGFPAHGLAIRERENL
>NC_011729.1|WP_015954703.1|2974804_2976112_-|protein-kinase
MSQCKNLCINPNCPNPHNEDTQLFCQACNSELLLDGRYRVNKQLGGGGFGKTYEIRDCSPGNLGNTQSHKKVLKVLNYNHPKYVELFQREAHFLMRFNSPGIPKVEPDAYFTYYPFNSPDPLHCLVMEKIEGLDLKQYIQQKGSCISQKQAIKWMIQLMQILKEIHSQRFFHRDIKPSNIMLRSDGQLVLIDFGTAREVTDTYMSKQSAGQVTGLFSAGYSPIEQLNGQAMPQSDFFALGRTIVFLLTGKHPSELYDFETDSLCWREYVPALSPEFGDFLDRMMARLPSQRPQSADAILEQLMKLFHLLHSGDSSSASQYKQGTTVTSAPSQNEPSKFNASQSLVSSKPTPTPIPEHQSTYVETTPAVTQAPLDANFASHCQQKLAEYIGPVASILCQRLLHKNPTISPTEFVQTLAKKIPNPKQAEEFQNNLLK
>NC_011729.1|WP_015954704.1|2976579_2977908_-|GAF-domain-containing-sensor-histidine-kinase
MSHSSTMLNPPSAEFISLCRAQLELLIEEFKADWSAVYLTREWDKSQTNLFPVVIYPEQFSKGEGLLTRLIPSGEEKSSIVGSFLQTLPEIINEAEIDPDFLDTLCQHPQEAQNNQIILPLIYQEMVMGLLVTGRQDVQWHETELTQIDKIVKTLAIACFLDQRQEWYQQQLQQQYLKNAHQRDQLDNLLHQLRNPLTALRTFGKLLLKRFLPDEKDQNVIKGIIRESDRIQDLLRQFEQQSDILPQEPSTATVITLPETETHSPLLLPSVALALEPVSVEEILTPLLISAQALAQEKQIQVISKVPPNLPPIGANFKALREVFSNLIDNAIKYTPAGGEIEVSIVFRLGDDWEGIQISDTGYGIPREDQTHIFERRYRGVQAAGNIPGTGLGLAIVKDLVEQMQGKIEFISPNGKSQKQSLPGTTFIVWFPIAKAPLDAVA

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Crispr_ID: NC_011729_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_24

3083166-3083445

Orphan

N:A

Consensus_repeat	Method
CCAAAAACATCATCTAAGGAAGGAG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_011729_24

>merge|NC_011729|24|3083166-3083445|CRISPRCasFinder
CCAAATACTTCATCTAAGGAAGGAGGGGTTAATTCTTTTTCTGGGGTAGCTGTTACTGCTCCAAAAACATCATCTAAGGAAGGAGGGGATAACTCTTTTTGGGCTTCCTCTTGTACTGAACCAAAAACATCATCTAAGGAAGGAGCGGGTAATTCTCTTTCTGGTTTGGTTTCTACTGGCCCAAAAACGTCATCTAATGTAGGAGTTAATCCCTCGATGACTTCTAAAGACTCTTGAGAATTGATGTCTGATGCTCCAAAAATTTCATCTAAAGAAAGAG

>NC_011729|24|22|3083166-3083445|CRISPRCasFinder
CCAAATACTTCATCTAAGGAAGGAG	GGGTTAATTCTTTTTCTGGGGTAGCTGTTACTGCT
CCAAAAACATCATCTAAGGAAGGAG	GGGATAACTCTTTTTGGGCTTCCTCTTGTACTGAA
CCAAAAACATCATCTAAGGAAGGAG	CGGGTAATTCTCTTTCTGGTTTGGTTTCTACTGGC
CCAAAAACGTCATCTAATGTAGGAG	TTAATCCCTCGATGACTTCTAAAGACTCTTGAGAATTGATGTCTGATGCT
CCAAAAATTTCATCTAAAGAAAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954797.1\|3096650_3096965_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954787.1\|3073887_3075606_-\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NC_011729.1\|WP_015954798.1\|3098266_3098815_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NC_011729.1\|WP_015954789.1\|3079319_3080060_-\|DUF3891-family-protein	unknown	unknown	gnl\|CDD\|379025
NC_011729.1\|WP_015954794.1\|3092143_3092704_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|377949
NC_011729.1\|WP_015954782.1\|3067236_3068418_-\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465
NC_011729.1\|WP_015954783.1\|3068826_3069888_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_011729.1\|WP_015954793.1\|3089012_3091721_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_011729.1\|WP_041238221.1\|3076294_3079195_+\|pyruvate-phosphate-dikinase-PEP/pyruvate-binding-protein	unknown	unknown	gnl\|CDD\|235751
NC_011729.1\|WP_015954799.1\|3098831_3099197_-\|response-regulator	unknown	unknown	gnl\|CDD\|381116
NC_011729.1\|WP_015954796.1\|3095514_3096294_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954795.1\|3093292_3094942_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_157867603.1\|3080401_3080884_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NC_011729.1\|WP_015954786.1\|3072337_3073105_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NC_011729.1\|WP_015954801.1\|3101134_3101653_-\|chemotaxis-protein-CheW	unknown	unknown	unknown
NC_011729.1\|WP_015954784.1\|3069894_3070854_-\|DUF3616-domain-containing-protein	unknown	unknown	gnl\|CDD\|372008
NC_011729.1\|WP_041237740.1\|3099274_3100468_-\|response-regulator	unknown	unknown	gnl\|CDD\|381129
NC_011729.1\|WP_015954792.1\|3086130_3088935_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_011729.1\|WP_015954785.1\|3070872_3072246_-\|alkaline-invertase	unknown	unknown	gnl\|CDD\|372373
NC_011729.1\|WP_041237739.1\|3068507_3068786_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187593

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954787.1\|3073887_3075606_-\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NC_011729.1\|WP_015954798.1\|3098266_3098815_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.15986e-31
NC_011729.1\|WP_015954789.1\|3079319_3080060_-\|DUF3891-family-protein	gnl\|CDD\|379025	pfam13030, DUF3891, Protein of unknown function (DUF3891). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are approximately 250 amino acids in length.	6.0823e-89
NC_011729.1\|WP_015954794.1\|3092143_3092704_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|377949	pfam07963, N_methyl, Prokaryotic N-terminal methylation motif. This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.	0.00404528
NC_011729.1\|WP_015954782.1\|3067236_3068418_-\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	0
NC_011729.1\|WP_015954783.1\|3068826_3069888_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	7.30874e-46
NC_011729.1\|WP_015954793.1\|3089012_3091721_-\|GAF-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.21293e-73
NC_011729.1\|WP_041238221.1\|3076294_3079195_+\|pyruvate-phosphate-dikinase-PEP/pyruvate-binding-protein	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	5.65595e-90
NC_011729.1\|WP_015954799.1\|3098831_3099197_-\|response-regulator	gnl\|CDD\|381116	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators. OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.43367e-35
NC_011729.1\|WP_157867603.1\|3080401_3080884_-\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	6.71573e-08
NC_011729.1\|WP_015954786.1\|3072337_3073105_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	2.9334e-142
NC_011729.1\|WP_015954784.1\|3069894_3070854_-\|DUF3616-domain-containing-protein	gnl\|CDD\|372008	pfam12275, DUF3616, Protein of unknown function (DUF3616). This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.	2.19452e-05
NC_011729.1\|WP_041237740.1\|3099274_3100468_-\|response-regulator	gnl\|CDD\|381129	cd17602, REC_PatA-like, phosphoacceptor receiver (REC) domain of PatA and similar domains. Nostoc sp. (or Anabaena sp.) PatA is necessary for proper patterning of heterocysts along filaments. PatA contains phosphoacceptor REC domain at its C-terminus and an N-terminal PATAN (PatA N-terminus) domain, which was proposed in a bioinformatics study to mediate protein-protein interactions. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members of this group may have an inactive REC domain, lacking canonical metal-binding and active site residues.	5.68738e-49
NC_011729.1\|WP_015954792.1\|3086130_3088935_-\|GAF-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.63355e-48
NC_011729.1\|WP_015954785.1\|3070872_3072246_-\|alkaline-invertase	gnl\|CDD\|372373	pfam12899, Glyco_hydro_100, Alkaline and neutral invertase. This is a family of bacterial and plant alkaline and neutral invertases, EC:3.2.1.26, previously known as Invertase_neut pfam04853.	0
NC_011729.1\|WP_041237739.1\|3068507_3068786_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187593	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs. Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.21004e-34

>NC_011729.1|WP_157867603.1|3080401_3080884_-|chemotaxis-protein-CheW
MTKTVTNYQNPLQKAQVVKTLKLLIFTVGKLNLALPIERVKKVVNYTPIHGSGLSFVGVAHVGEQEITVIDLHQRLFHESEAIQSGTKGYLIMAKNNQGELFGIWVGKTPTLIDVSLNQIRELPASYRRSDTLQIASHVTVIQEKEQSLTVFIIDSDQLL
>NC_011729.1|WP_015954789.1|3079319_3080060_-|DUF3891-family-protein
MIVNLTQNGWEVIYHRAHALLAAQLAGQWDKTQTPKRFFETLAAISHHDDLEVEWENAQLTEAGAPLDFTLTLDYSAKRIEKLADLVDKALHRGRWVALLVSMHVCFLSQAQWESSEQWKQFLNDQVQKQQAWRDALGIDKDEAEQTYQFLQWCDRLSLILCQKSLPVDQRALEITSRFNHQRYDVKQIDGFVHVVPWPFEKDEFIVGVDACDLNQLKFEDNAQLKQALQQAPIKELTWKFAKLRT
>NC_011729.1|WP_041238221.1|3076294_3079195_+|pyruvate-phosphate-dikinase-PEP/pyruvate-binding-protein
MTLSQVWGCLLIFVLCPLLGGLPLINWITYALTGRQLSKLGTGNVSVSAAFYHGGTFVGIVAVICEALKGILAVLLARHFFPSGSLWELVALIALMMGRYWMGRGAGTTNVFWGILIHDPIAAALTLLIGGISFTIFRDRSSGRLVVLFLLVLILTLRHSTQIDYIITALLLAGLLAWIYSKIPDDLDLPQSGVNPESEKMFSFFRGDKAIVTLNDKLEVRKVGEKAATLSYLKRLGYSIPDGWVIRPGDDPQPFIDALNPSASHPLVVRSSAIGEDSENASAAGQYTTVLNVTTKQALQQAIITCQTSYNNPNAIQYRQDKQQTDYGMAVLIQKQIRGVFSGVAFSRDPIDNFNPDVVIEALPGEANQVVSGQITPQHYHVDIPSDEADGDITLQQGENADIHPSIIKEVAILARELEDLYHGIPQDLEWTYDGQQVWLLQSRPITTLQPIWTRKIAAEVIPGVIRPLTWSINCPLTCGVWGEIFSLVLGNRSKNLEFSETATLHYQRAYFNATLLGTIFRRMGLPPESLEFLTRGAKFSKPPITSTVINIPGLLRLLKREWNLIEEFNQDYQTSFIPTLDTLKNQSLDDFSPPELLGQIETILDVLKRATYYSILAPLSLSLRQAILKVNPEQLDNSQTPEVASLRSLLNLAHDAQKLLPVNRLKVDKCPSLFAHLAEIPDGENILQRFNQWLTRYGYLSEVATDIAVPRWQEHPQPMRELFTQFFLEDDRNTPLNFQPEQQDWKSNIVQKRLNLKGQVTEVYSQLLAHLRWRFIRIETRWLTSGILSETGDIFFLKFSEIRSLICETDANLLPKIPQLIQSRRREFEQNQQLTQIPYVIYGNPPASEQLALSTLTPKQRLTGIGASPGLIEGEIKILTRFQNLTDINQTTILVVPYTDSGWSPVLARAGGLIAEVGGRLSHGAIIAREYKIPAVMDVHNATHLLQDGQKVRLDGGRGIIEILS
>NC_011729.1|WP_015954787.1|3073887_3075606_-|phosphoenolpyruvate-carboxykinase-(ATP)
MVNLQQLQNDSEQPFTLPGQSKTNHLAGCSEAITPPNYLVENDTFHQPTYGLESLGMKNLGRVFHNLSVPQLVEQALARKEGVLAANGALVVETGKYTGRSPNDKFIVKEPSSEHEIDWNKDNVPISEAKFEQLYRKVITYVQGRDLYIFDGYVGADPKYRFGVRIINELAYQNLFAHQLFLRPSPMELISHKADFTVICVPGLHGDPIDDGINSEAFIILHLAKKLVIIGGSRYSGEIKKSVFSMMNYLMTKQNVLPMHGAANIDKKSHTALFFGLSGTGKTTLSADPKRSLIGDDEHGWSDDGVFNFEGGCYAKTIRLSAEFEPQIWAAIRFGTLLENVIIEPDTRIPNYDDNHLTENTRAAYPLRYISNCAVSGLGSHPKTIFFLTADAFGVLPPIAKLTNEQAMYHFLSGYTSKLAGTERGITAPQVTFSACFGQCFFPLSPVIYAKMLGERLEHHTETSVFLINTGWSGGRYGVGSRISIKHTRAMVSAALDGHLDTVEYTPHPIFKVLVPHHVHGVPNKILDPRNTWEDPEAYDLQAQELARRFAENFEQFKDVPEDILAASPVVK
>NC_011729.1|WP_015954786.1|3072337_3073105_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANIKRQKARVDAKKGKTFTQLSRAIIVAARNGLPDPAANLQLRTAIEKAKAAGIPNDNIERAIAKGAGTYGNDENNLEEIRYEGYGPGGVAILIEALTDNRNRTAADLRAAFSKNGGNLGETGCVSWMFDQKGVVILEGKVEEEVLLDASVEGGADTYEIFDSDEEQGAEVFTEVSNLETLNQTLQEKGLPVKEAELRWIPNNSIEVTDPEQGRSLLKLMDALESLDDVQNVTANFDMADELIALTIA
>NC_011729.1|WP_015954785.1|3070872_3072246_-|alkaline-invertase
MEIKKLIDLGWQALDDSIIYYYDRPVGTVAAQDSSTDPLNYDQCFIRDFIPCGIAFLIKGQTEIVKNFLTHTLKLQIKERQLDFLEPGRGIMPASFKVIHNKQGEQYLKADFGNDAIGRVTPVDSCLWWVFLLRAYVECTEEYSFAHSPEVQKCIRLIMELCLSARFDMFPTLLVPDGSCMIDRRMGLNGHPLEIQVLFYTALKVAEELLLDNQENDRIIQAVHNRLNPLTIHIRQHYWLDLDRINTIYRYKGEEYGEEAPNQFNIYSDSIPYAQLSEWLPEDGGYLAGNLGPSQLDCRFFSVGNLVAILSSLTENWQSQAIMNTIEQKWDDLVGYMPMKICFPAIKDRDWQIMTGCDPKNRPWSYHNGGNWPVLLWLLVACAQKTDRINISKKAIEIAMKRLLKDEWAEYYDGKNGRLVGKEARKYQTWTISGFLVAQELMNNPEYLQWISFAQKK
>NC_011729.1|WP_015954784.1|3069894_3070854_-|DUF3616-domain-containing-protein
MKKLSFKIEKELQHQGTCDASGSVAIEDTHYFILGNDEDNILRIYDAEKSGEPVEKIDTNSYFKNNPKDKEVDIEAAALLDGVIYWITSHGRNKKAKEKPERCNFFANKITVKNNSFSSEQVGESYSELLTDMFNDKTLKKYNLKEAAKLAPKAEGGLNIEGLCITPSQEMLIGFRNPIPDGKALLLPLKNPKDLIEKKETCASFGEPIELDLGGLGIRSIVYWEKHEVYFIVAGSYDSSDNFQLYQWSGNPQESPEVIEGELPQDFKPEDITFYPNRDNEFQLLSDDGSIKRDGETECKDLPENERYFRSLWMSIKEE
>NC_011729.1|WP_015954783.1|3068826_3069888_+|AI-2E-family-transporter
MKNSTSNSKVNHFWDFLSTNNLVRFLLLFASGWALITFLDYFQDILFIFSVAGILAFCLNYPVHYLERYLGKGLARGIVIFLSLLVVIGGLAALIVIAFFQLQQLFDSLIQNLENIYNSAPSWQKIQNFLIQRNIDIDLRPFIDNITSEISSGLISFLNLLTLLPNTFLGLIFILVISFFMLTNGERLWDLFLLLVPQQERKKVEKAIQKSFIGFFRGQLILCLSLSLLSFLAFLLLQIPNAAALAIIVAILDTIPGIGATLGVIVISLITIVQGGWIDAIKVVIISIILQQIQDNYIAPKVMGNTVNLNPVIVFFALMVGAKIAGIIGIFLSIPVAGVIVSLLEIDEMKSDS
>NC_011729.1|WP_041237739.1|3068507_3068786_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSEIRDKVVWITGASSGIGEALAYQIGQRGGKLILSARREEELERVKANCQGISSDDIKILPVDLSLSESLPSVSQQAISFFGTIDILINNG
>NC_011729.1|WP_015954782.1|3067236_3068418_-|RtcB-family-protein
MPYQQLKLSAPSPILSWANHELGAKETQMAKNVANLPFVFKHVALMPDVHLGKGALVGSVIATKDAIIPAAVGVDIGCGMAALAMPFNATQLEGKLKKIRLDLEASIPVGFNENKEVEKAVTNWQSWKDFKELHSGVQKLHNKAMKQMGSLGGGNHFIEICLDEQEQVWLMLHSGSRNIGNQLALCHISTAKNLAKLTQTSLPDQDLAYFVAKTPEFEAYWRDLQWAQNYARFNRDVMMARVKRVVEKHLAGGKPTKPLLTVNCHHNYAEKEMHFDQEVYVTRKGAVRANASDYGIIPGSMGAKSYIVKGKGNAQSFCSCSHGAGRLMSRNKAKEQFTLDDLIEQTQGIECRKDHGVIDEIPGAYKPIDEVIAQQSDLVEVVAVLKQVICIKG
>NC_011729.1|WP_015954792.1|3086130_3088935_-|GAF-domain-containing-protein
MNTQSQYTNSEQLLPTKLQSSSEMAIKVEKPETINKSQLRLILQTLYDLPVGKKAQLLLLFIFLSFAGLIGIGVSSFQETGQNSQTHKSYWTSVYSRSVEGQFTPIEPQEPIVLNNQAIIQPALEQATKNPGQSLEQKITEGGQTYQVNIVAIPAVKGNPQSVIIYGEKQPDSPSYSGQNLQIKLGLSIAIATFILGVCGILLRSITRSIEQLNQVTGDLAQGDYHSSIKAENRDEIGQSITQLNKIRLKLDKTHNHLSSYREICQLFRELETNFDSRKVEKILDLTSRVVKANQVLFYQIDKYGKQQILSSSRSKPLNLIGFDSSQLIKDFSLFKAQTLMELNKSNLFPSLSQLLAKLGVNSGGLLPLKTKKFLFGCLIVEFQGQDHLSNSTTVSFLTFIAHQFQLILERHFAKVSQDLEANLQEELTRIRGTLQPLREVQPMLDKVVTECRKAMKVDRVIVYQFDEKWYGKIVAESVNPLFSRSLGVYVGDPCFADKYVKFYREGRVRALNNIDIAGLTDCYLQQLRPFQIKANLVVPIIVNNNLFGLLIAHYCQSPYAWNDCELDFLKMMGIHLGLALDHIQILNQISQQEIEFKTKVDELKEDAIIMRSQLERALKGDLSVRATGLTGEIAPIATLYNQIADNLSQTLTNIDSVATDLTHSIAVYHHLTQLLTQDTTQMDERIEHLKTYLTHLQSIITEITKVTTSSKENITLYDQGLDNCAKGMELLVTQMGAIADTVATTTKKIEHLGESSQEISKVVGLISRFAAQTHLLALKASIEAARAGEEGRGFAVIADEVRTLAASSAEATAEIENLVASIQQETKEVALAMATGTEQVDKASQYLEGTKESLGQLKTVSHQINEMTVTVSDYCSDANEQGISVQSVSEQLEELLEITQDKNREISRTIEEIQVMTEAINETVKQYVQPLKH
>NC_011729.1|WP_015954793.1|3089012_3091721_-|GAF-domain-containing-protein
MTQTSRSPNPENSKLMNGSHSSSEEVEFSADSLIPLPLPKDSEDSRIEMSSVSYGQNKSLTSTPKPSVVKDLQIKFWDRRGLRYKAAFFACVLGILPATFVGVTTYSVVQNKLQQQASKNQNNVEFIQDLNSVYSHTRLTLLLTLTLSGFLVSVIGWWLADTVTNPIRSIAKGVRKIGRGELDTHLEIPGEDEFAILGENINAMTAQLKVLVQQQAEAVQQANLLAEIGGTFVTDEQQLNPVFNNALDGLRKILCAERAVIYRFRPDGSGYVSNESLESGWGSAMSEDFSDPCIPIEVLESYLKGRMTTIDDVFNSSSVSDPHLHLLARLQVRASIIVPLLKDRKLYGLLIVHHCINPHTWTEAEVSFTCSMADKLNIILDRLSSSLQRREEAIRSQNLRDITLKIASALSNSDVFDVTCREMRLAINSDRVIVYRFDANWKGTIIAESVAEGFPKALGSQIADPCFADRYVDKYRQGRVKATPNIYEAGLTDCHLRQLEPFEVKANLVAPILNQGELLGLLIAHQCSGPRYWEQGEIDFFSQIATQVGLAIDRTDLLEKQRQAEEEQRQAREQIQRRALELLMEVDPVSRGDLTIRASVTEDEIGTIADSYNATIESLRRIVTQVKNAALALASTTTDNEEAVRALSGDAIASAENISGALEQLQLMTESIRAVAANAGQAETAVQQATLTVEAGEEAMNRTVDGIMSIRETVAETAKKVKRLGESSQKISKVVNLISSFADQTNLLALNASIEAAHAGEEGRGFAVVADEVRSLARQSAEATAEIEGLVASIQAETNEVVAAMEAGTEQVVMGTKLVDETRKSLNQITAVSIQINELVEAITQAALEQSTTSESVTQMMAQVAVISDKTSLEATQVSDSFKQLLQVAQTLQESVKAFKVE
>NC_011729.1|WP_015954794.1|3092143_3092704_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MLRLGKKSLEQGFTLVEVLVAILLTTIFITMTAQLMVINAPSKINKKTDSQSSVWIEQDQEKIIAMANTMASSSTFCTNLLESYAVKLWRQLENEPTSSLPGQNEANGIILEDTGSNYAHPDFVLQKRLSTATPKVYKLQRNYTITTEKADVLMINYAIIDTDTNDKMIERSFAINSSLYARCPKY
>NC_011729.1|WP_015954795.1|3093292_3094942_+|hypothetical-protein
MSFPNSKNSIKRDKNSHHHLKKNSSQQNAGSFGLKLWLLMTIFSKKSSSEKGQLLVFVLLFGVAFIGLSMAMILSNLKEYKIVNQEINRQQGETLTENAVTYAQTFFNDNRLLLLFPLESFEEIAAGETSKSQMIQQGLRRCQSDEDWQRQLEEMKSYTSGDWLSIEMGKWRMTDYQYDPQKKVGTIIVESETEKNIKSRLKVPMNIEFYSVPVLHLLGLDTDGTGNLRFLGDIWVKNCQVDLNKFFFNNPNKNFSIYMTFPEPELPELGFGTVSGIPEQQQNIIINNPPSDIVFPRPGDVPSNAYTDSETGEEVLVFSYVIKSLNITNNSRKIILRNELNGKRVKIIFYLVKSARGSIVNQCSNGGIPCKPADFFLFAYGADGGLTLGEFDESNPQICLRINSYLNGVIVAPGYQVGLNRNGVQVQFDGFIIADTWDTSGSCGSNSPSIRLKSTLEWSDFPGDWEYELIPPMIAGNRNWQPLPVSGSERTSELSDYEEYDELTNYLRKFKSEQPPTYELLPSNASSFHFQYRNIMKEEEEEEEEETNN
>NC_011729.1|WP_015954796.1|3095514_3096294_-|hypothetical-protein
MITKLLTTSVFSLGLGLVLQAPVLSANIGFFNSLSYTDPTASNNIKNILADLGHTVNEFDSLDPSDWQQVIAENQLLLFNVITLEIEPDFSEETKTVIRNYVNRGGGVIFTSIADDGFTLWNSIFNTEIETELRSGELFLNTTNAAGTIFADAPPVLQPSGYIGASIASLPPEARIIYYNDNPLNSSPVFISSFGKGNIAYVGYDFFDLSEEPLWGDVFNLAVDYVAVPEPSLLGAAVMISLGGGFLKSKTKNKNNDEN
>NC_011729.1|WP_015954797.1|3096650_3096965_-|hypothetical-protein
MSEERLSRIEELIIALSGNLSNFRSYVEHRFDELETRIKTIELDVEPEGRISEAFEHLSNDIDSLEKRLTRLEQRLEHGQNQMRATLDLIVRRITGYEQQENQE
>NC_011729.1|WP_015954798.1|3098266_3098815_-|purine-binding-chemotaxis-protein-CheW
MTSNSFSPSSSFFSTTTEEKGELQQFLRFYLFPDTTVMLPLAQLTEVLTIPLGQIIPVPHMPSWIMGVYNWRGEILWMVDLGQLLGLIPWHQQTMTSSYRAIVLHSGTNDTPLSKIRGQVLGLVVSGVEDIEWCNTQEIQSPPASAVTPSLAPFLRGYWLKPEGNMIVTLDGDAILAALPKP
>NC_011729.1|WP_015954799.1|3098831_3099197_-|response-regulator
MGTALIVDDSLTEREIITHYLKQLGINVSTANSGEEALEKLNSQIPDLIVLDVVLPGRSGFEICRALKADTKTQKIPVILCSTKGSEMDKFWGLKQGADAYIPKPVDQELLLTTVKNLIKS
>NC_011729.1|WP_041237740.1|3099274_3100468_-|response-regulator
MSAKYPLYNPVSIREFTASKQIGFFEALKQPRFSGQLILTGPKGEKWDFYLYLGRIMYATGGIHPVRRWRRNLSAYFPQLTPESIQLALASLGPSNIQVCWEYQLLCLWVEQQKISREQAARMIRNTIVELLFDITQLMEMSCELKPDDLLSTRLVLVDAEQVIAQCQQDWQAWQAAKIADRSPNFAPIIRQPEQLQQRTSPQVYQTLKQLLDGQQTLRDLAVRMKRDVLTVTSSLLPYIQLGLVELISIPDLPPPITPPPTGEIQPEAPIPGPLIACIDDSPLMCQTMEKILTSANYQFIGINDPLRAIAILLARKPELIFLDLVMPNANGYEICSQLRKMTFFKNTPIIILTGNDGLVDRVRAKMVGSSDFISKPVNAETVLSIIRKHLKEETVV
>NC_011729.1|WP_015954801.1|3101134_3101653_-|chemotaxis-protein-CheW
MTRFSHLASRRKASFKAEVTYPVITFRLRDCWFALPVISVQKVVFLDKIYGDPKKTGVGLTRYQEQEILVMDVGNKIFGEPPQTQEDIEKINQEQQRYLAILSHPVGIFVGLPMDSPPIIQRVPESGFTSIPDVYLATGNLQCISSTMIKMADLPPTFLLDSELFYQNFLQE

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Crispr_ID: NC_011729_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_25

3178831-3178966

Orphan

N:A

Consensus_repeat	Method
GCTTCCTCGATGGATACTTTTGTCAGATGAGCAACCAGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_25

>merge|NC_011729|25|3178831-3178966|CRISPRCasFinder
GCTTCCTCGATGGATACTTTTGTCAGATGAGCAACCAGTTCACTCAATACAATAGCTCGGTCATACTCATTCTCGATAGAGCGAGCAACAGAAATCGCTTCCTCGATGGATACTTTTGCCAGATGAGCAACCAGTT

>NC_011729|25|23|3178831-3178966|CRISPRCasFinder
GCTTCCTCGATGGATACTTTTGTCAGATGAGCAACCAGTT	CACTCAATACAATAGCTCGGTCATACTCATTCTCGATAGAGCGAGCAACAGAAATC
GCTTCCTCGATGGATACTTTTGCCAGATGAGCAACCAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015954854.1\|3166996_3168667_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_011729.1\|WP_015954870.1\|3187241_3187988_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NC_011729.1\|WP_015954863.1\|3177416_3177827_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	unknown	unknown	gnl\|CDD\|224485
NC_011729.1\|WP_015954874.1\|3191548_3192265_-\|fasciclin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225214
NC_011729.1\|WP_041237746.1\|3192432_3192882_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NC_011729.1\|WP_015954868.1\|3184794_3185961_+\|urea-ABC-transporter-permease-subunit-UrtB	unknown	unknown	gnl\|CDD\|200272
NC_011729.1\|WP_015954867.1\|3183332_3184664_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372603
NC_011729.1\|WP_015954862.1\|3177106_3177361_+\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|377095
NC_011729.1\|WP_015954859.1\|3172991_3175166_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NC_011729.1\|WP_015954869.1\|3185985_3187143_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NC_011729.1\|WP_015954861.1\|3176098_3176644_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954857.1\|3170071_3172081_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NC_011729.1\|WP_015954864.1\|3177819_3178047_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954873.1\|3190471_3190969_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015954856.1\|3169314_3169608_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NC_011729.1\|WP_015954858.1\|3172183_3172420_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NC_011729.1\|WP_015954866.1\|3182013_3183024_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|110924
NC_011729.1\|WP_015954860.1\|3175338_3176130_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376645
NC_011729.1\|WP_015954872.1\|3188913_3190323_-\|peroxidase	unknown	unknown	gnl\|CDD\|225393
NC_011729.1\|WP_015954871.1\|3188017_3188719_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015954854.1\|3166996_3168667_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_011729.1\|WP_015954870.1\|3187241_3187988_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.3833e-156
NC_011729.1\|WP_015954863.1\|3177416_3177827_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	gnl\|CDD\|224485	COG1569, COG1569, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	2.78541e-33
NC_011729.1\|WP_015954874.1\|3191548_3192265_-\|fasciclin-domain-containing-protein	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	5.0263e-44
NC_011729.1\|WP_041237746.1\|3192432_3192882_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	6.11003e-91
NC_011729.1\|WP_015954868.1\|3184794_3185961_+\|urea-ABC-transporter-permease-subunit-UrtB	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.15522e-67
NC_011729.1\|WP_015954867.1\|3183332_3184664_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|372603	pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This domain is found in a variety of bacterial periplasmic binding proteins.	0
NC_011729.1\|WP_015954859.1\|3172991_3175166_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	4.2996e-64
NC_011729.1\|WP_015954869.1\|3185985_3187143_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.57151e-150
NC_011729.1\|WP_015954857.1\|3170071_3172081_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NC_011729.1\|WP_015954862.1\|3177106_3177361_+\|UPF0175-family-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	2.14105e-20
NC_011729.1\|WP_015954856.1\|3169314_3169608_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	8.45183e-27
NC_011729.1\|WP_015954858.1\|3172183_3172420_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	6.327e-30
NC_011729.1\|WP_015954866.1\|3182013_3183024_-\|hypothetical-protein	gnl\|CDD\|110924	pfam01972, SDH_sah, Serine dehydrogenase proteinase. This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan.	6.596e-13
NC_011729.1\|WP_015954860.1\|3175338_3176130_+\|hypothetical-protein	gnl\|CDD\|376645	pfam01887, SAM_adeno_trans, S-adenosyl-l-methionine hydroxide adenosyltransferase. This is a family of proteins, previously known as DUF62, found in archaebacteria and bacteria. The structure of proteins in this family is similar to that of a bacterial fluorinating enzyme. S-adenosyl-l-methionine hydroxide adenosyltransferases utilizes a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. This family used to be known as DUF62.	2.58361e-12
NC_011729.1\|WP_015954872.1\|3188913_3190323_-\|peroxidase	gnl\|CDD\|225393	COG2837, COG2837, Predicted iron-dependent peroxidase [Inorganic ion transport and metabolism].	2.94078e-16
NC_011729.1\|WP_015954871.1\|3188017_3188719_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.95523e-133

>NC_011729.1|WP_015954864.1|3177819_3178047_-|hypothetical-protein
MATITIEVDEEIKTAFECATPETQEQLSTIIQLFFRKNLQTKTLTEVMAEISDRAQKRGLTPEILQNILADKEDD
>NC_011729.1|WP_015954863.1|3177416_3177827_-|putative-toxin-antitoxin-system-toxin-component,-PIN-family
MIRLVIDTNVLISALLFKNSVPFQSVKLAENRAIILYSQATLDELEQVLYRKKFNKYLSSEERQIFLSKFIISSEFVSITETITICRDQKDNKFLELAVSGNANVIITGDLDLLILNPFQNIEIMSPDAFINQFKQ
>NC_011729.1|WP_015954862.1|3177106_3177361_+|UPF0175-family-protein
MSLQLSIPDSIIEALRLPEKRIEQELLHELAVALYSQELLSFGKARELALMDKYQFGQLLAQRDVIRHYSSEELEDDLVYANRQ
>NC_011729.1|WP_015954861.1|3176098_3176644_-|hypothetical-protein
MATDSLQDVNHLIITNEILPGQFRGKQFEPKEIILPLEAKNWIIKEKNRIKQLVLVDNFFVLLVLGALGSLIFLISEHIKDEKNNDIKMYYFRPIFGMLLAVATFIVSMSFNSLTSTITIDNVRFESLLFLAFSAGLLSDKTYEMIVSRANNNINAGNEDEQESADQKSTVSKSPENSPPD
>NC_011729.1|WP_015954860.1|3175338_3176130_+|hypothetical-protein
MLIHLIADYGNNDPAFAEVSQRLLKPLPDAQIHSLSVPPFSTLATGFWIAQLGLNPGPDNRLIYHNCAPRKDDLEARVDNEGEGLTYAVLPNGVKVVGVWAGYTLSFIKHYAESIYTVKVSRGGSQFRSRDVFPQAAGAIASGDLSLLGEQIFPEQIPDFPGDRVAWVDGYGNLKTTIAADSIELKPQTKVIVRLGDLVSDAVYSDGSFQVSEGTLAFAPGSSGWEVEGKPRVRWMELFLRGGSAWRRFGKPKVNQVVSFQVI
>NC_011729.1|WP_015954859.1|3172991_3175166_+|transglycosylase-SLT-domain-containing-protein
MLKKLTHKTSLLALGSGTVLVAVVGLVGLSPKIIERVENWRQTSQLAEQENLDYPSIVLKLVNLSPEDRKEQLEAIAASETPSLDRSRARYILASELIQNYEGGPALRLLEGLEEEYPTLAPYILLKQGRGYELTNENERAQEAWLKLIETYPQDPVVAEALYFLGKYDPQYWEQAIAQFPQHPRTWDIIQQRLKENPKQPQLMLLLVKHNIFAPEINEVRDRLVKDYSQQLTPEDWEAIGNGYWEIGQYENAAKAYYKAPRTPVNLYRYGRGLHINGKKAQAKQAYQQLLREFPDAPETGMGIMRLVSLSESREALGYLDYAINKFPQQAPDALLKKAEILDQLGSKTSASKARQQLLDQYGSSETAAEYRWKVAKSYGDKGEFVKAWEWAQPITIKASDTNVAPKAAYWIGKWAQKLNRPQDARDAFLHTLGRHPQSYYAWRAAVQLGWKVGDFNNVRYYAPTVMLPDSRPVLPSGSKAFKELYRLGLDDQAWTLFQAEVANPWQLSVDEQFALGLFKQKQQQYLEGINLVWNLKNRETPQEQAQWQLLRNKPEYWQALFPFPYNDLIETWSQQRTLNPLLVSSLIRQESRFEKEIRSPVGATGLMQVMPATGQWISDKANIPKYSLTDPNDNINMGTWYLDYTHKEYGNNSLLAVASYNAGPGNVSQWIKRFGLSDPDAFVEKIPFKETRGYVEAVFGNYWNYLRIYNPEVANKMSSLPQQ
>NC_011729.1|WP_015954858.1|3172183_3172420_+|50S-ribosomal-protein-L28
MARHCELTGKKANNAFSISHSHRRTKRLQHANLQWKRIWWEEGKRWVKLRLSTKAIKTLEKKGLASMAKEAGINLNQY
>NC_011729.1|WP_015954857.1|3170071_3172081_+|molecular-chaperone-HtpG
MTVLEKGNITIHTENIFPIIKKSLYTDHEIFLRELISNSVDAISKLKMASLSGDFKQEVTEPEIVISVDKENKTLSISDNGIGMTVEEVKKYINQVAFSSAEDFINKYQKSANDFIGHFGLGFYSAFMVAKKVEIDTLSYQEGAQAVHWSCDGSPEFELSDSSRTEVGTTVTLTLLDDEQEYLEPSRIRQLVKTYSDFIPVPIKFEGEQINKQKALWKESPQNLKDEDYLEFYRYLYPFQEDPLLWVHLNTDYPFLLNGILYFPKLRPDVDVSKGQIKLFCNQVFVSDHCEEIIPEFLMPLRGVIDSPDIPLNVSRSALTNHRTVRRIADFISKKIADRLKSLYNENAQDYIRCWEDVGTFVKYGSLKEDKFKKQVEDILIYRTTYKPTENESKSESETPKVEVQGAEEDIWQDVSQEKQDSDSPLVAIEKQGYTTLQSYLDRNQERHENRVFYCTDASTQATYVQLYKNQGLEVLYFDSFIDTNYFIPFLEREYDKVKFSRVDSELDQTLLQEDKSNEIVDPATNKTRSEQIKELFEKALDNPKLNIKTEALKSDDPQGTPPAMVLLPEAMRRLQEMTALYQQQALAFPEEHILMINTAHPLIDNILKLNQGSIVTGSGESPSAKMAKMLCQHVYDLALMSQKGFDAQGMKSFVERSNQVLTHLTEKL
>NC_011729.1|WP_015954856.1|3169314_3169608_-|RNA-binding-protein
MSIYVGNLPHEVEDKHLTEVFADYGKVNRVYLPTDRETGKRRGFAFVEMETAEMEEAAIATLDGAEWMGRELKVNKARERENRNSGGGGNYRRNNRY
>NC_011729.1|WP_015954854.1|3166996_3168667_+|chaperonin-GroEL
MAKIVSFKDESRRALERGINALADAVKITLGPRGRNVLLEKKFGAPQIVNDGITVAKEIDLEDPLENTGAKLIQEVASKTKDVAGDGTTTATVIAQALIKEGLRNVTAGANPVALRRGLEKITNFLVQEIESVAKPVEMGEAIAQVATVSAGNDEEVGQMIALAMEKVTKDGVITVEESKSLSTELDVVEGMQLDRGYISPYFITDQERQITDFDNPYILITDKKISAIADLVPVLETVARQGRALLIVAEDVEGEALATLVVNKARGVLNVAAIKAPSFGERRKAALQDIAILTGGRVISEEIGLSLETVTPDMLGQAVKVTVDKENTTIVAGGDHKADVQKRIVQLRKELEATDSEYDTEKLQERIAKLAGGVAVIKVGAATETELKDKKLRIEDALNATKAAVAEGIVPGGGTTLIHLAAKVVDFKNTLSNDEEKVAADIMAKALEAPLRQLADNAGLEGSVIVEGVRNTDFNVGYNALTGEFEDLIKAGIIDPAKVVRSALQNASSIAGMVLTTEALVVEKPEKQAPAPDMGGMGGMGGMGGMGGMGGMGMM
>NC_011729.1|WP_015954866.1|3182013_3183024_-|hypothetical-protein
MVDHLASNKKVNQPPVFFEETQQLITTLEKKLNSTVLVYWTSPVGSICQNDVEGLQEILQKIGRQKEIYLFHKSNGGSGLASLRIVHLLRHYTNTLKILIPLGCASAATMIALGADEIYMGPLAFLTAIDTSITHDLSPVDTFNNLVSVSQDELTRVINLWRKEAKSDDSNPYQTLFQYIHPLVIGAVDRASSLSIKVCTEILSYHIKDKYKAEKISNHLNSEYPSHSYPITIEEAKRIGLTVFPLEPEINQLLLNLNKYYSEMGQKAFTFFDEQNYHNNEILNILEGPDIQVYYQNDVDWHYRSEERRWARLNDQSSWRKTERKGDEIQKTVFYI
>NC_011729.1|WP_015954867.1|3183332_3184664_+|urea-ABC-transporter-substrate-binding-protein
MGQDLGRRKFLLYGSGAFVTSLLLKACSQAETSTNSATSPDQTVAKSGGSATSGDTIKVGLLHSLSGTMAISETTVVEAEELAIDEINAAGGVLGKQIEIVKEDGASDWPTFAEKATKLIDQDKVTTIFGCWTSASRKAVLPVFESKNHLLWYPVQYEGQECSKNVFYTGAAPNQQIEPAVDWLLENKGKKFFLVGSDYVFPRTANTIIKEQLKAKGGETVGEDYLPLGNTEVTAIITKIKAALPDGGVIFNTLNGDSNVAFFKQLQSAGITPDKYPVMSVSIAEEEVRQIGPEYLVGQYASWNYFQTVDTPANKKFVEAFKAKYGQDRVTNDPMEAAYIMVYLWKQAVEKAGTADDLDKVRAAAIGQEFDAPEGMVKMYPNHHISKTVRIGQVRDDGMFDIVWSSDGPVAPIPWNQYVPETKGYACDWTDPNKGGKYKTDKI
>NC_011729.1|WP_015954868.1|3184794_3185961_+|urea-ABC-transporter-permease-subunit-UrtB
MLPIFEALFNGISIGSVLLIAALGLAIVFGLMGVINLAHGELMMLGAYTTFVVQNGFKVLGDPWFDYYIFFALPMAFLVAGLTGLLLERGVIRFLYGRPLETLLATWGVSLILQQFVRSVSWLFMISIVVFCGLFFGAQWILQKRPNLERIKTTAIAITLPLSLAIATITGILLNNSQNLPLIKPWFSARNVDVTAPKWLRGGLPLGSFQLPYTRLFIIILTVLCVVGIYWFLNRSNWGLRIRAVTQNRTMSACLGIPTNQVDALTFALGSGLAGIAGCAISFLGSVGPNTGQNYIVDTFMVVVVGGVGNLLGTIIAALMIGILNYLIGSGILALLLMPIEPLKGLTDLLTFFATSSMAKVMIFALIIAFLQVKPAGLFPQKGRTAEL
>NC_011729.1|WP_015954869.1|3185985_3187143_+|urea-ABC-transporter-permease-subunit-UrtC
MLTVDVSPKNQEVKKHRRRLVIEGAIILGLAFILVVLMPFLLSEFRLKLLGRFLSLCLVALGIDLIWGYTGLLSLGHGIFFALGGYGLAMYLNLQLPEGQIPEFFTLYGVTQLPLFWQPFNSFFLTCLAIIIIPSLVAGLLGYLIFRNRIKGVYFSILTQAALLVFFNFFNGQQKLINGTNGLKTDTQTIFGALVGSSPVQLAFYEITIVLLILIYLLCRWLTSGRFGRLLKAIRDDEIRVRFSGYNPTGFKVLVFAISGAIAGISGALYTVQSGIIAPSPSLDVAFSIEMVIWVAVGGRGTLIGAILGTLLVNWGKTLLSEQFPEIWLFFQGALFLIVVTVLPEGILGGLKKMRSLLGWKKHLITYPAIEENPEIQQEKQNIID
>NC_011729.1|WP_015954870.1|3187241_3187988_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MNPKILEIKNLTVNFDGFKALNSLNFSMETGELRVIIGPNGAGKTTFLDVITGKVQPTIGQVLFKGRNLQNLSEHQIARLGIGRKFQTPRVYQNLTVRENLDLACNKNKNVFSTLFSRPPAVEYRQVGGLLETIGLIPKADLAAALLSHGEKQRLEIGMLVAQSPDLLLVDEPVAGLTDEETENVGNLLLALAESHSIIVIEHDMEFVRQIARRVTVLHQGSVLCEGTMDEVQNDPRVIEVYLGCPTH
>NC_011729.1|WP_015954871.1|3188017_3188719_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLKVSDLNVYYGESHILRDVDLSVTQGEMVCLIGRNGVGKTTLLKSIMGLLKPKTGKINYTDKNITKLSTDQRAKLGIGYVPQGREIIPRLTVKENLLLGFEACPKLKKLNQDIPEEIFELFPVLKTMLSRMGGDLSGGQQQQLAIARALMGKPQLLLLDEPTEGIQPSIILEIEAAVRHIIKTTGISVLLVEQHLHFVRQADKYYAMQKGGIVASGYTRDLSQDIIQRFLAV
>NC_011729.1|WP_015954872.1|3188913_3190323_-|peroxidase
MTNNPTSKQLNLADIQGLIVRGYNMNVVRYFVLCVNDATKAKEFIGDLVNGESLKITSAEQWNIKPSHCLNIGFTFEGLKALDLRDDVNEAFKHRNYEAFRKSAIAQAPGIGDTGENDPKNWKNGLDKQDKAHILLFLLAEDHDTLSQKSVELRDKFEKQEIQELGYFDGAKLLDQDGKPSDMIHFGYRDGIAQPRVEGFPAKDGIPDDGQPVIPAHEFVLIHTTKPPYAPYKVPQPLILGENGSFAAFRVLEQNVVAFEKFLQDHKKDIDPETLAAKMCGRWRNGVPLDLSPEKDQLEPPVTYAQFNSFDYQDDPDGLKCPIGSHIRRNNPRNTLKVEADINLRRLIRRGIPYGPPYNPQSSDPQSADEERGLLGLFICASLGQQFEFVMKEWVNSGSFAGLGDNVKDPLLGANNPQDSKFDIPLSPPSADKSLQIKGFERFIITRGGAYCFLPSITALKYMTEIPPS
>NC_011729.1|WP_015954873.1|3190471_3190969_-|hypothetical-protein
MSDQPKPRQRPLSFIAPIKGVDEVSVQENYKKLSALIANVGPAGLNDVGTVHFGNFLFLEPATGSDGTQYYKKFALFTFYDGKFETYVKDFALKVGNTFNALLQYLDDVPEDLIPVQQNIEDFADYIEKYDQPVAKWYTAYPNKIVKEITNPVQGVTANLEEEDS
>NC_011729.1|WP_015954874.1|3191548_3192265_-|fasciclin-domain-containing-protein
MKRQTSLNKIIAFATAIVGLGFLSAVPVSAQTQSEETFRLAQTMNQDDINRGNTNQGDINQDNITPGINQNEMNQGEMNQSDINQGETNQANMNIVQVASNSESFNTLVRAAQEAGLEDTLANQGPYTLFAPTEEAFNELPDGAVDYLLQPENRDLLRQVLTYHVVPGSITANQLSTGTVDALGGGLAVRVTDDRVIVNNASVINPNIQASNGVIHGINRVLMPASLRNQIINAVNAQ
>NC_011729.1|WP_041237746.1|3192432_3192882_-|nucleoside-diphosphate-kinase
MERTFIMVKPDGVQRALVGEVIRRFESKGFILVGLKMMQVSRELAEKHYEVHKERPFFGSLVEFIISAPVVAMVWEGDGVVSAARKIIGATNPLSAEPGTIRGDYGVNIGRNLIHGSDALETAAREISLWFSNDELANWEPTIKPWLYE

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Crispr_ID: NC_011729_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_26

3575124-3575742

Orphan

N:A

Consensus_repeat	Method
GTTACAATTAAAATGAATCCCTATTA-GGGATTGAAAC	PILER-CR
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CRT

8 spacers

The CRISPR arrays of NC_011729_26

>merge|NC_011729|26|3575124-3575742|PILER-CR,CRISPRCasFinder,CRT
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAACAAAACTGGGGACTAGATTTAAATAGAGATGGAGGTTACAATTAAAATGAATCCCTATTAGGGATTGAAACAACGAACTGAGCTTAATTCCTTCTGCTTCGACCGGAGCTAATAGCGTTACAATTAAAATGAATCCCTATTAGGGATTGAAACGTCGTTCCTGGAGGCATAAATAAACCCGGTGGAGTTACAATTAAAATGAATCCCTATTAGGGATTGAAACCAAGTATCTCCCCCTACATCAATAAATTCTAATCTAGTTACAATTAAAATGAATCCCTATTAGGGATTGAAACGGCTACATCCTCAGCAACCGCTACGCCTGCGCCCCGTTACAATTAAAATGAATCCCTATTAGGGATTGAAACTTTTCTCCTAAAATATTGTAAGCAATTTTATAGGCGTTACAATTAAAATGAATCCCTATTAGGGATTGAAACCAGTGTCAAATAACAATGACGCATAATATTTTCCGTTACAATTAAAATGAATCCCTATTAGGGATTGAAACGAGCCTCTTGGCAATTTCAAAAAGCGACTCGACCTGTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC

>NC_011729|26|10|3575124-3575742|PILER-CR
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	AAAACTGGGGACTAGATTTAAATAGAGATGGAG
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	AACGAACTGAGCTTAATTCCTTCTGCTTCGACCGGAGCTAATAGC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GTCGTTCCTGGAGGCATAAATAAACCCGGTGGA
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CAAGTATCTCCCCCTACATCAATAAATTCTAATCTA
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GGCTACATCCTCAGCAACCGCTACGCCTGCGCCCC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	TTTTCTCCTAAAATATTGTAAGCAATTTTATAGGC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CAGTGTCAAATAACAATGACGCATAATATTTTCC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GAGCCTCTTGGCAATTTCAAAAAGCGACTCGACCT
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC

>NC_011729|26|24|3575124-3575742|CRISPRCasFinder
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	AAAACTGGGGACTAGATTTAAATAGAGATGGAG
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	AACGAACTGAGCTTAATTCCTTCTGCTTCGACCGGAGCTAATAGC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GTCGTTCCTGGAGGCATAAATAAACCCGGTGGA
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CAAGTATCTCCCCCTACATCAATAAATTCTAATCTA
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GGCTACATCCTCAGCAACCGCTACGCCTGCGCCCC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	TTTTCTCCTAAAATATTGTAAGCAATTTTATAGGC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CAGTGTCAAATAACAATGACGCATAATATTTTCC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GAGCCTCTTGGCAATTTCAAAAAGCGACTCGACCT
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC

>NC_011729|26|7|3575124-3575742|CRT
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	AAAACTGGGGACTAGATTTAAATAGAGATGGAG
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	AACGAACTGAGCTTAATTCCTTCTGCTTCGACCGGAGCTAATAGC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GTCGTTCCTGGAGGCATAAATAAACCCGGTGGA
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CAAGTATCTCCCCCTACATCAATAAATTCTAATCTA
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GGCTACATCCTCAGCAACCGCTACGCCTGCGCCCC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	TTTTCTCCTAAAATATTGTAAGCAATTTTATAGGC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	CAGTGTCAAATAACAATGACGCATAATATTTTCC
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC	GAGCCTCTTGGCAATTTCAAAAAGCGACTCGACCT
GTTACAATTAAAATGAATCCCTATTAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955181.1\|3562559_3562967_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041237768.1\|3563354_3566099_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225982
NC_011729.1\|WP_015955197.1\|3585758_3586085_+\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987
NC_011729.1\|WP_015955198.1\|3586336_3587368_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955194.1\|3582108_3583248_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_011729.1\|WP_015955195.1\|3583441_3584449_+\|transposase	unknown	unknown	gnl\|CDD\|259851
NC_011729.1\|WP_015955184.1\|3566425_3568732_+\|Na-Ca-exchanger/integrin-beta4	unknown	unknown	gnl\|CDD\|239804
NC_011729.1\|WP_015955185.1\|3568936_3570421_+\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|273050
NC_011729.1\|WP_015955188.1\|3573776_3574853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_015955191.1\|3580127_3580379_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955189.1\|3576397_3579484_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NC_011729.1\|WP_015955186.1\|3570426_3571725_+\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226125
NC_011729.1\|WP_015955187.1\|3572817_3573789_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_011729.1\|WP_015955193.1\|3581596_3581995_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NC_011729.1\|WP_015955196.1\|3584873_3585758_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_011729.1\|WP_015955180.1\|3560906_3562481_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237874
NC_011729.1\|WP_015955182.1\|3563029_3563401_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_083775379.1\|3580437_3580788_-\|Mini-ribonuclease-3	unknown	unknown	gnl\|CDD\|224850
NC_011729.1\|WP_015955199.1\|3587519_3588665_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955179.1\|3560063_3560612_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275017

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_041237768.1\|3563354_3566099_+\|hypothetical-protein	gnl\|CDD\|225982	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].	3.00449e-12
NC_011729.1\|WP_015955197.1\|3585758_3586085_+\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	4.6057e-44
NC_011729.1\|WP_015955194.1\|3582108_3583248_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_011729.1\|WP_015955195.1\|3583441_3584449_+\|transposase	gnl\|CDD\|259851	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins. This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.	0.000100086
NC_011729.1\|WP_015955184.1\|3566425_3568732_+\|Na-Ca-exchanger/integrin-beta4	gnl\|CDD\|239804	cd04277, ZnMc_serralysin_like, Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.	1.87378e-36
NC_011729.1\|WP_015955185.1\|3568936_3570421_+\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	0
NC_011729.1\|WP_015955188.1\|3573776_3574853_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	5.09557e-37
NC_011729.1\|WP_015955189.1\|3576397_3579484_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_011729.1\|WP_015955186.1\|3570426_3571725_+\|DUF697-domain-containing-protein	gnl\|CDD\|226125	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown].	1.91251e-56
NC_011729.1\|WP_015955187.1\|3572817_3573789_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.83698e-131
NC_011729.1\|WP_015955193.1\|3581596_3581995_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.01041e-22
NC_011729.1\|WP_015955196.1\|3584873_3585758_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.50833e-37
NC_011729.1\|WP_015955180.1\|3560906_3562481_+\|hypothetical-protein	gnl\|CDD\|237874	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau.	3.47479e-07
NC_011729.1\|WP_083775379.1\|3580437_3580788_-\|Mini-ribonuclease-3	gnl\|CDD\|224850	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and repair].	6.13468e-41
NC_011729.1\|WP_015955179.1\|3560063_3560612_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|275017	TIGR04155, hypothetical_protein, PEP-CTERM protein sorting domain, cyanobacterial subclass. This domain model describes a subclass with family TIGR02595 of PEP-CTERM protein sorting signals associated with bacterial exosortases. This subclass is restricted to Cyanobacteria, including the genera Cyanothece, Nostoc, Trichodesmium, Lyngbya, Arthospira, etc. This PEP-CTERM subclass features strongly conserved residues within the transmembrane region, including a Gx4GxG motif. Model TIGR03763 describes a corresponding cyanobacterial form of exosortase found in most species with this domain.	3.45612e-07

>NC_011729.1|WP_015955188.1|3573776_3574853_+|hypothetical-protein
MFGLRTTYKKLFVHQWSAQLKEYVTELVWSKEGYLAACSAAGEVILLKPNQKESVEILSPSTPLEQSIDCLEFSADGKYLAAGGQDGKLRIWQVKPELELIETLDTQNKWITCLHWHPKLNQVAFTLGRYVQIWDVITKEIVISLPFESSSVLDLAWHPQGDYLAIAGDREVKVWSCSAWNDDPEMLDLPAACLGVSWSPNGEYLAASSLDLSVFVWQWGNLSPWRMQGFGGKVRNLSWSTPTVGTAPLLAVSSVDGIVIWQKQAEDEQGWTPKGLRLHEGVIQGLKFQPKSLLLASVAEDGWLILWQKAKKPVQWLEGVSEGFSGLAWHPNGNYLAAAGQNGELLVWVASESGKGFG
>NC_011729.1|WP_015955187.1|3572817_3573789_+|GTP-binding-protein
MVDLQSSNLVPVTVLTGYLGAGKTTLLNRILTYEHGKKVAVIVNEFGEVGIDNQLVIDADEEIFEMNNGCICCTVRGDLIRIIGNLMKRRNKFDHLVIETTGLADPAPVIQTFFVDEDMREQLLLDAVVTVVDTKHIWQHWEADEAQEQIAFADVILLNKTDLVSPDNLEELEQRIRGMNPMAKIYRTQNADIEMNSILGVKAFDLNRALEIDPSFLSEDAHQHDESVYSVAIVDSGIVDGEKFQNWLGELLPTKGTDIFRMKGILNVAGIDQRFVFQGVHMLFEGKPDRPWKPNETRKNELVFIGRNLDEVKLKEDFKACLV
>NC_011729.1|WP_015955186.1|3570426_3571725_+|DUF697-domain-containing-protein
MTEPNNAHQDSKKTADKTSWKTRLSDTWNQTTERLKQALPVEQVAQTVVDWFSINEEQVAKILETVRAELPTTKAILIGKPQAGKSSIIRGLTGVSAEIVGQGFRPHTQHTQLYSYPSSDVPLLIFTDTVGLGDVTQNTQAIIEELLGDLKKQTNQATLLILTVKINDFATETLRQVAQQLRQKYPNIPCLLAVTCLHELYPPDVSDHPPYPPNFEEINRAFNGIKKDFSGLCDRSVLIDFTLEEDEFNPVFYGLEEFRDTLAELLPEAEAKTIHQLLDNVAGERLGNLYRDVGRRYMLSFSIMAATLAAVPLPFSTMPVLTALQVSMVGLLGKLYGQTLTPSQAGGIVSTIAGGFFAQAIGRELVKFIPGLGSVIAASWAAAYTWALGESACVYFGDLMGGKKPDPKKIQSVMQESFKAAQERFRKKGNVG
>NC_011729.1|WP_015955185.1|3568936_3570421_+|glycolate-oxidase-subunit-GlcD
MLLQNILNRSKNKWQPIIKQFEAIVGKDGVVQRKDELLTYECDGITGYRQRPAVVVLPRTTEQVAAVVKICHDRDIPWVARGAGTGLSGGALPLENGVLIVTARMKQILKIDLENQQVVVQPGVINNWVTGAVSGAGFYYAPDPSSQIICSIGGNIAENSGGVHCLKYGVTTNHVLGLKIVIPDGSIIDVGGVIPEMPGYDLRGLFVGSEGTLGIATEITLRILKVPESICVLLADFTSVEAAGQAVADIIAAGIIPAGMEIMDNLSINAVEDVVSTGCYPRDAAAVLLVELDGLQVEVTANKLRVGEICQQNGARNVTTANDPETRLKFWKGRKAAFAAAGQMSPNYFVQDGVIPRTRLADVLREINQLSEKYGYPIANVFHAGDGNLHPLILYDNKVEGAWEEVEELGGEILKLCVRYGGSLSGEHGIGIDKNCYMPEMFNEIDLETMGYVRDCFNPKGLANPGKLFPTPRTCGEAANAKKIDKNIEGAELF
>NC_011729.1|WP_015955184.1|3566425_3568732_+|Na-Ca-exchanger/integrin-beta4
MENLIDSLFPELGILDPLYSFDEPLTEKEIILKDNSDTLDSFDETNLSKNLFDNHVDILNNPTTFDNHDHDHEHPEENLITEVTETAVAQSSLSDTQLNGILSGSQWKFSWGDRKLTYSFYEDSIFNGTYNGSETGVKEVSNAIKNNVRSILNWLENVINIDFVEVTESVNNYGRMRFMLSNGPSYAYAYYPSSDSMTSLSGDIHLNPNYDRLGDTNGFQHLAGRHGNLSLIHEIGHALGLKHPHEGSFTLAPQDNNTTNTVMTYNFTGKPAGTFMGYDVNALQSLYGAKDYNSTDTIYQFTTRVDQFYVNDQLFLNTPNQTKQLIWDSGGKDTLDFSQLSANSSGYRFDLNEGNILTAKNAYNGTSYTVNGVTYYTTTYGTAIGYYVVIEDLINSSSNDEIFANNAANRFKGYSPTLKTGNDIYWNTSNNDTLDLSSYQSSDVTQTKNGNDLVLNLNGNGTITVKNYYQGNSINLLFAPTLTPSLPSLSIDDVSINENNNAVLTVSLSSPSTQTVSVNFVTADDTAIAGQDYNSLSGTLSFNPGETSKTIIIETINDQIYEPLSESYSINLSNVQNATLGDSQGIVTINPSDNQPLISISNRTKTEGSKTAPNAITNFYFTVRLSNPSSETITVDYTTADGTAIAGSDYIASSGTLTFAPGEISKSQKISVYADQIVEDNETFFMNLSNPTNGTFKDSQGMATITNDDLNTSTTLATTEPSASFEDLSLDNNSMANLPQTTDLLSSVSNDPMYQQFSSIFNGSNAMF
>NC_011729.1|WP_041237768.1|3563354_3566099_+|hypothetical-protein
MKQKIGKQSVNLDGNEIRLTPFEDGLHLSTMLRIAVNGRDIGAYLLTKGTQKNRFCFVFGFECQGIHSTLKKEQLNTIFSSLETGLKDIPIDERMTLHLGSFSSDSQRQKELKSLTEKTTSLDLKYLLMAERARVRELTRAGIRKPKFLRIYVTYTVEIGTPQSEDWIEKLLAKAELWWSQFKGKMTDVENQHIETLVTNAYKRGFYRWEQLLSTQMGLDIKPMTAQDLWEGIWARFNKSLPIKIPQLLILDENGLREEIYSDLPSTKLLLDSLHSTTLLIESNVPQANRRWVRVNNHYVGVLTFLEKPGGWPNKTAQLRYLWELLAREVVTDTEIFCELTPANPALVKTTLQRVLKQSNMTAILAQEKSKTIDVNAQLKLKKSVAAQEQLYEGAIPIYTGISILVHRPTLEKLDEATKYIENCFQRPARVIRETEYAWKIWLQTLPIVWESLLAKPFNRRQLYLTSEVPGLMPLVLTKKGDRKGFELIAEEGGTPIHLDLFTQHKNLALFATTRAGKSVLVSGILTQALAYGLPIVALDFPKPDGTSTFTDYTQFMGKNGAYFDISKESNNLFEQPDLSSLNPEQQRDRLLDYTTFLESALMTMILGSSSAENPLLSQTVRSVLNLALRAFFADESINERYEKAMDHGFGSAAWKNTPTLKDFLHFCSPKYLELDSIGGRVEDALNHIELRLRFWLSSRVGQAISSPSSFPTDAQLLVFALRNLSDNEDAAILSLSAYSAALRRALSSPASIFFIDEAPILFEFEQIANLVGRICANGAKSGIRVILSAQDPDTIAKSKAASKILQNLTTRLIGRIQPTALDSFVDILKYPKEIIARNAGESFFPRKEGIYSQWLLDDNCNYTFCRYYPGYEQLAVVANNPHEQLSRQKAMNRYHDKYEAISAFARQLVSELR
>NC_011729.1|WP_015955182.1|3563029_3563401_+|hypothetical-protein
MTQEQDQEFRPVNQILGTQPSLGPIPADQIIPWTVIALASNFIINGIFGGVFTDEFQKWVWTFLLAGWGIATWWILTGKKSWRFLSQFIGVPKWTRGFARYQSLLEINYEAKNRKTKRKSRRK
>NC_011729.1|WP_015955181.1|3562559_3562967_+|hypothetical-protein
MLPAKYPALKKGKKQIFKKRLKLPGRLLMISFGVGFWLNNLASPASAQFFRKAEDFFKTTLTQGSSAGENSNLAISLIFNGLRAVFLLYIAVSLIGIINAVRKDEDWQSIARIPLLVIVAVTIADILTGFIIGGN
>NC_011729.1|WP_015955180.1|3560906_3562481_+|hypothetical-protein
MTRYLNPSDIIPEILLPEEDEQPVLNGQERMTLKAFNDSESEGQPVDWESQMSKLVGLEEDISLEDNHPQDNSLSSPLEPESETSNPKPSLSSNPFMKLGLVGGATLVIFILAGGFLLQIMNLGNQKPTQKNPIQPQQPLKTESRLEKLETEVETLKTKLAFAEQEQAIKNAQQTLRIKKSSPMPTVSPAIAPSNSPAPPAPQIQTVYVPRIVTVERVVKVPQPSQPVAKATPQPPVAQSTPTSTPTPQPMSSPTPKPTPTPQQVNPSVGAEVFSPVEDPETVVTSATSQPPLPPVSIANPPQASPQTREPVAVGTSTEGILATAVFGETSTSRNSEQEKNVFVVTLQKPLKNRNGEVVLPENAQLLSEINSLSDRGLLYLTVTKAIWEKGDNLIEKTLPKGALGVRAPEGKPLFAQKYPNESGSITSMDMNLFFLGGLGKVAQLFNRTDSEVVTTNIGGTIVTNNNRDPNYAAGVLEGGINSIVPQITQRNQQRIAEKLQRTNIWFIPAGTSVEVYVNQPLKF
>NC_011729.1|WP_015955179.1|3560063_3560612_+|PEP-CTERM-sorting-domain-containing-protein
MNSTLLKLATTLIGSSLSLALVNMAPAQAAVFYTFTQTFDGGGTLSGEFSGTDVDNNGQIDASEFDSFTSTFTSDVLGFENLSWGLANLAPFSYFVNPNEFSFLLTNPAPFPPGGTGWSSSPLSGTTFVGYAFVQDGQIGAVFSSESLEVVPEPLTMSGVAIALGFGTLYKRAKHKKAKKQS
>NC_011729.1|WP_015955189.1|3576397_3579484_-|cation-transporting-P-type-ATPase
MNKYTQTTLNGKGNPKILQTLHKTVNGRRRYKIKGLLQSPALKHHLEMRLSSEKGVSYVRANPATGNLLLLYQVEDCNPQEISREIETLVLEFQKQPRRYSHQDYNGNGKSASIVPSQQWHHQDIETILPELSTSIQTGLTPELVEHNSQQYGANVISQAKPRSGLSIFIDYFKSAPVALLSLAAGLSIATGGIADAAVIMGVVTINAVLGYMTESQSERIINSLQNLVNPSAWVIRDGNITQLHAAEIVVGDILILKPGCYIPADARLIEADNLTLDESALTGESVPVLKSADTLYHGEIPLAERINMVYRGTFVTGGQGQAVIVATGKNTEMGKIQSLVGETLNPQTPLEKQLQKAGGQLVLASSGVCGLIFGLGLLRGYGVVEMLKNSISLAVAAVPEGLPTIATTTLALGIRNMRKQKVLIRRLNAVEALGSIQTICLDKTGTLTENQMSVVEIYTDSTTVTVDQGQFWQAEKSFDPYSCDQLLSLLQVVVLCNDSEITRQKNLEYVLKGSSTENALIHAAIAAGIDVEELRYRYPRLDTSHRSQFRNIMTTIHSCDESKQWLAVKGNPTEVLNYCSWKEKDGQRLPLTEEDRTSIKWQNEQLAGKALRVLGVAYCYTDKSVKINGNGNGNGNGNIHHDLVWLGLIGMIDPIRNGVKTLIGQFHQAGIETVMITGDQRSTAYAIGKELNLSEAKQLDIIDSTELDSKDPQKIRELCDHVHVFARISPAHKLQVVQTLQQTGKVVAMTGDGINDTPALKAAEVGVVMGNTGTDAAREVADVILEDDNLETMIVAISQGRTTYNNIRKSLHFLLATNLSEMIVMLLASVAGLGHPINAMQLLWLNLVTDIFPGLALAQEPPEPDVLQVPPRPASEPILKKSDLGRITLESTVLSVSTFGAYSYALARHGAGQRSSTIAFMSLVGGQLFHALSCRSEKPLRTQHLPPNPYLNLALGGSFAIQFLPLVFPGLGNLLKVVPIDVLDGLVIGGTAILPLAINEGTKPIGHLPARVEDEAIEVEKQDNCNN
>NC_011729.1|WP_015955191.1|3580127_3580379_+|hypothetical-protein
MASSAPLKGSELIDCARANGEQGIEVAAYRCGYGNDLARFEQQLREAGQHIGVEINGFDDLVNNRQGNEQRGVVIAPDTPSQL
>NC_011729.1|WP_083775379.1|3580437_3580788_-|Mini-ribonuclease-3
MGQLSPASLAYIGDAVYELYVRSVYLLPPRRLSDYHSQVVAQVRAEQQAAHLQTLEPYLTETEQEIVRQGRNAATGRPRRLSPKLYQQATSLETLIGYLYLQDPQRLTQLLEYLEL
>NC_011729.1|WP_015955193.1|3581596_3581995_-|STAS-domain-containing-protein
MRIKEEAIPDPLNLTVSLRGTREVRKNYQIFRLTGLLDAFSEPTFRKVISTHIDEGPTDVVLVLSQIDFIDSSGLGALVQLVKQAQTAGGSLQIVTNPRVTQTVKLVRLEKFLSLQPSVEDALANIENKDKS
>NC_011729.1|WP_015955194.1|3582108_3583248_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MSIAQGRNALLVLADGTVFRGWSFGATGTSIGEVVFNTGMTGYQEVLTDPSYCGQIVTFTYPELGNTGVNPEDEESERPQIKGVICRNITHRPSNWRSTQSLPDYLVEHNIPGIYGIDTRALTRKLRSVGSMNGGFSSEILDPQDLLRAVQDAPSMAGLNLVKDVTTRQVYEWSTPTDPHWEFCPVMNESNGQPLTVVALDFGIKRNILRRLASYGCRVIVVPANTPPEEILKYNPDGIFLSNGPGDPSAVKEGIETTKALLQAQKPTFGICMGHQILGLSLGAETFKLKFGHRGLNQPAGLTQQVEITSQNHGFAVTEESLNPEVEITHLNLNDRTVAGLKHKSLPFFSVQYHPEASPGPHDADYLFEKFVKLMREHK
>NC_011729.1|WP_015955195.1|3583441_3584449_+|transposase
MSPRKLTNDNKKEILKLYRETGETTSTLAERYEVSSSTISRFLKTHLTESEYEDLIQQKRLARTPKGALQLELEKMNKSNQGNLFTTPPDESEVEPEPELKVEETPEEEQEEEEEVKAVEPQEELKPVEEVKVIQKPVSKLIRFPSQEQPEVSQKTPVVKEVTYPSSPPEPEPEQFEEEEDEEDISRVDVAAYAMLDDEDLLYFDEEEEDEEDEEDWEDEIDISYPNSFPKTAQLQILPIASAAFPKTCYLVIDRAAELITRPLKEFAELGKIPAEEVQQKTLPVFDNHRVARRFSKRRERVIKIPDGRMIQKTCSHLEAKGITRLLLDGQIYSL
>NC_011729.1|WP_015955196.1|3584873_3585758_+|pentapeptide-repeat-containing-protein
MKIGHLLRLYEQGNRDFTEIDLNGADLHHVTLLSVNLMGANLMGSNLSRGFFIKSNLSRAKLNWANLTFVKMSQAELVEADLTKANLSGAFMVKSNLMKAKMSGADLSHTNLRGSDLRGANLCGANLYRVNLREANLQGVNFNWANLKEARLSSAILTDICCYHANFSGSFLKDVDLSGADLEGVDLSYVKLGDSQLVGANLSGANLTGANLRNVDLRGANLKKANLSEANLDGANLEGAILTGAILRETNLSEAKGVKVKPDKIFNTQPIKNESSKLSFDSSTLKILQARFVS
>NC_011729.1|WP_015955197.1|3585758_3586085_+|divalent-cation-tolerance-protein-CutA
MTDSVTEYGIVLVTTSSQEEAEAIAFALIESVLAACVTVMPVQSIYKWQGDIYNEQEWQLIIKTKLEQFQDLSDKVIELHSYDVPEIIALPIVDGSESYLTWIGENVR
>NC_011729.1|WP_015955198.1|3586336_3587368_-|hypothetical-protein
MDEYLKTLQSLSQSIAQALQNPQNSPEEKRFVSHLSNSVNLCANEISKSANILKKIVDVSLEDLNKAEAILQNYYKISREVSPLTPLEEIGKLSGCQVKLLELIEESKKEVFEQLKESWEEDLENLKKRWFIDKEGKLKKGIGWIEKDNFIEGIKVIKLKQISEFMKNLQHISKLIFFQLDSIVNFNDIKDYLQILDYEKQKKYQDSIDLILKKINGYQNQLFLLQNNNEELQDFKLKMNVICYPILENKWGELSWNSVRKTKSQYNTIIESFINEIIQKKADLIKNLVETLIQLYNEFLQKQAFYNQQSPEEQQAKQEWVNAQRKKLETLQSSLDNVISFQL
>NC_011729.1|WP_015955199.1|3587519_3588665_-|hypothetical-protein
MDEYLKTLQSLSQSMDQALQNPQNSTEEKQFVSHLSNSVGFCVDEISKSANTLKKIVDVSLDDLNKAEAILQNYYKISREVSPLTPLEEIGKLSGCQVKLLELIEVSKKDIFEQLKGSWKENFDDQIKQWFIDKKGNIKKEIGWIEKDNFLKGIKSIKQNQIERAELLFKSSYKLIIEQLKLIIDFKDLQYILQIFDDKQQKIYKNLIYNIWKKINNALFVLENPSQDIEDLKYILRYRRSRKLSCSPSSYPPILRTKLYNLDVTNISVVQEFEIEIDDILSPICNIIWGYISWNLVIKTQLQYNSIIESFINESFQKKSKLITYLIQRLIKVYNDFLQQQAFYNQQSPEEQQAKQEWLNTQRQQLKTLQSSLDNVISFQL

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Crispr_ID: NC_011729_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_27

3638122-3638219

Orphan

N:A

Consensus_repeat	Method
AAGGCGGGCTAATTTTGGGATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_27

>merge|NC_011729|27|3638122-3638219|CRISPRCasFinder
AAGGCGGGCTAATTTTGGGATAATAATAAACCTACCTATTTACGCCTGCACCCTCAAGGCTCTTGCTCTAGGGGCAAAGCGGGCTAATTTTGGGATAA

>NC_011729|27|25|3638122-3638219|CRISPRCasFinder
AAGGCGGGCTAATTTTGGGATAA	TAATAAACCTACCTATTTACGCCTGCACCCTCAAGGCTCTTGCTCTAGGGGC
AAAGCGGGCTAATTTTGGGATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955244.1\|3635825_3638024_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226466
NC_011729.1\|WP_015955237.1\|3625894_3627598_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|226651
NC_011729.1\|WP_015955246.1\|3640331_3640736_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_011729.1\|WP_015955234.1\|3623071_3624829_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|215160
NC_011729.1\|WP_157867439.1\|3638570_3640025_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955248.1\|3641853_3643083_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_011729.1\|WP_015955238.1\|3627868_3628774_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NC_011729.1\|WP_015955240.1\|3630863_3631637_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955249.1\|3643457_3646061_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|379765
NC_011729.1\|WP_015955250.1\|3646093_3646996_-\|lipid-kinase	unknown	unknown	gnl\|CDD\|183857
NC_011729.1\|WP_015955251.1\|3647047_3648757_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NC_011729.1\|WP_157867618.1\|3624866_3625709_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955247.1\|3640752_3641712_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NC_011729.1\|WP_015955242.1\|3634836_3635070_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955254.1\|3652087_3653623_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|235651
NC_011729.1\|WP_015955241.1\|3631827_3634671_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_015955253.1\|3650623_3651904_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340830
NC_011729.1\|WP_015955243.1\|3635201_3635414_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955239.1\|3628976_3630782_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236018
NC_011729.1\|WP_015955252.1\|3648851_3650168_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015955244.1\|3635825_3638024_+\|hypothetical-protein	gnl\|CDD\|226466	COG3957, COG3957, Phosphoketolase [Carbohydrate transport and metabolism].	0
NC_011729.1\|WP_015955237.1\|3625894_3627598_-\|alpha/beta-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	4.76376e-89
NC_011729.1\|WP_015955234.1\|3623071_3624829_+\|arginine--tRNA-ligase	gnl\|CDD\|215160	PLN02286, PLN02286, arginine-tRNA ligase.	0
NC_011729.1\|WP_015955246.1\|3640331_3640736_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.17892e-29
NC_011729.1\|WP_015955248.1\|3641853_3643083_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	7.38778e-59
NC_011729.1\|WP_015955241.1\|3631827_3634671_-\|TIR-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.51999e-117
NC_011729.1\|WP_015955239.1\|3628976_3630782_-\|aspartate-kinase	gnl\|CDD\|236018	PRK07431, PRK07431, aspartate kinase; Provisional.	0
NC_011729.1\|WP_015955249.1\|3643457_3646061_+\|GTP-binding-protein	gnl\|CDD\|379765	pfam16095, COR, C-terminal of Roc, COR, domain. The C-terminal of Roc domain, COR, along with Roc functions as the putative regulator of kinase activity. It functions as a proper GTP-binding protein with a low GTPase activity somehow stimulating the kinase activity.	2.04552e-64
NC_011729.1\|WP_015955251.1\|3647047_3648757_-\|CHAT-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	2.07043e-10
NC_011729.1\|WP_015955250.1\|3646093_3646996_-\|lipid-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	7.29617e-155
NC_011729.1\|WP_015955254.1\|3652087_3653623_-\|anthranilate-synthase-component-I	gnl\|CDD\|235651	PRK05940, PRK05940, anthranilate synthase component I.	0
NC_011729.1\|WP_015955238.1\|3627868_3628774_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.38771e-40
NC_011729.1\|WP_015955253.1\|3650623_3651904_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	2.77435e-162
NC_011729.1\|WP_015955247.1\|3640752_3641712_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	1.24061e-159
NC_011729.1\|WP_015955252.1\|3648851_3650168_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.49173e-07

>NC_011729.1|WP_015955244.1|3635825_3638024_+|hypothetical-protein
MTISTAIPEFCQGIKHFGQQLPDFEKYGKQAAIKEGQNAIASSNDPIAVYQTLLAADALRYLTLQTTATKESGHPGGFASIAEAIAALVMLGHKNIITEVGHHAPGFYSTMFLDRSLEDMGIKTVQQLGERFREMHGLLGHLSGQIPGLLNPAGPLGQGQHFAMAGAKLHRDFLFPVTIGDGGIGEPYVMSSFSHFHTAYPDVTNFLPILVWNGYSQEHHSMVSTKPNEEMIKYWQGNGFQEVILVNAKDFDDANQPGDYVDSTKFSFAKRLEFTQAVLEATDKAAKSAFSGKLTVLIVKQLKGAGVHKRGAQSHNLYPGDSLEKDYIVNALQERALSPEAWELVRTNFERSAGGPASHHVVTEKELPLPELGQLPLSEYPVKGDKKVATTAMGELVVHVGKKDPNFVITNADGNAASGINNINIGLKIIHPTVDDIYYQGPKGQVYEPLSEDACAGLAVGLALFGARTLWCSYESFAINGLPIWQTVTQAMAELRRPTPSTITLFTAGALEQGRNGWTHQRPEIENYFAAMMRNGNVFPLFPCDANSIQVCYEWALGTKNKGITITASKSALPVRTSFEQTRQGLQDGGVVLHETEGKKQVVFAVIGDMTLIPVFDAAQHLEDQGIGVRIVSVINPRRLYRPDDVMWHTCTEADSHFLDDEGFERLFGGDALIGVTGGTSAMLEPVMLRSTSKRDVFAWKRGETAASAGEIMAFNGLTAEALTKRALSLVG
>NC_011729.1|WP_015955243.1|3635201_3635414_-|hypothetical-protein
MINYFTCLGFVAICSMLFWGSDSAFALADSTVLSSQFSLNNHQTNPEKNQLLSDFKGVCDVRASDPNCRE
>NC_011729.1|WP_015955242.1|3634836_3635070_-|hypothetical-protein
MTPKLVRYYLKVSSLVLLFLMGFVGVMGMIDVLKLSPNDMTGKPETPNFSPSIKKHCKVQPQLPLCVKLGSLSMDNG
>NC_011729.1|WP_015955241.1|3631827_3634671_-|TIR-domain-containing-protein
MTDVFISYSRKDQEFVKILHQALSQSHRDSWIDWQNIPKGTQWWQEIESGIEGANTFIFVISPDSIKSEVCGLEINHAINNGKRLLPIIRREVSEFDDNNTAHQALKDHNWLFFREEDDFQTSFEELIKTLDTDLNYVHQHTRLLVRAKEWDKKGRRDSFLLRGEELKEAEQWLEEAQIRFQNYQQQFKGKRQDPNPLLTEQHLHYIRKSREIEDAEHQAKRILLEAKTKADRLIKIGSGISIGLLTLSVLLAFKVQLQLQATNIKVDVIESQQLWKEGKIVEALEEALQAAKQLNPILNLSPHLKDQAEKQTKIALQQTVYDTIKERTRFKEHQDYIWGVSFSRDGKLLASGSTDKTIKLWDVTKGKLLYTLTGHTDGISSVSFSPDGKALVSGSDDNTIILWDVMTGKKLKTLKGHQDSVFSVSFSPDGKTVASGSRDNTIILWDVMTGKKLKTLKGHQNWVWSVSFSPDGKTLASGSVDKTIILWDIARGKSLKTLRGHEDKIFSVSFSPDGKTLASASADNTIKLWDIASENRVITLKGHQNWVMSVSFSPDGKTLASGSNDNTIKLWDVVTGNEIKTFSGHQHLVWSVKISPDGKTLASSSWDKNIILWDMTTNKEIKTFSKHQDLVSSVSISPAGKILASGSNDKSIILWDITTGKQLNTLKGHQKAIYSLSFNKDGKILASGSDDHRIILWNVTTGKPLKILKGHQEAVYSISLSPDGKILASGTNKNIILWDVTTGKPIKSFKENKEIIYSISLSPDGKILASGTNKNIILWDVTTGKKLGTLEGHQELVFSLSWSEDRKILASGSYDNTLKLWDIATRKELKTLKGHQSVINSVSFSPDGKTVASGSADKTVKLWDIDTGKPLKTFWGHQDLVNSVSFSPDGKTVVSGSADKTVKLWQFEGNFDLNHLIIKGCKSINTYLNSNPTKNELREFCQLSFQ
>NC_011729.1|WP_015955240.1|3630863_3631637_-|hypothetical-protein
MKILLTILLIIFFLIAYPIPTQAETLTPPLNQYTQWTYKPTLKKAKEDLIYPEWMEGKWQVTSILKEQLAPFAPEIVTPGFENSRQYLNQPVEFEVSFEKNHRLRHYNSFFPIAINKQLSIIADRQFNGLNIAKAYLGEKGVLSVKVDPDNPNRQITSLPENRQLISTITKRGSKTPTTDQFITTEVTQQFFRTEISVYLNEVETTTAYQLLDSGDINAQQITAIYLSPKDPNYFKATGSPVALYRYQLQLHSQKRI
>NC_011729.1|WP_015955239.1|3628976_3630782_-|aspartate-kinase
MALIVQKYGGTSVGSVDRIQAVAGRVKKTVDGGNTVVVVVSAMGKTTDGLVNLAKEISSNPSRREMDMLLSTGEQVSIALMSMALQELGQAAISMTGAQVGIVTEAEHSRARILEIKPDRIQSHLNGGKVVVVAGFQGISNSDELEITTLGRGGSDTSAVALAAALKADSCEIYTDVPGILTTDPRLVPEAQLMDEITCDEMLELASLGAKVLHPRAVEIARNYGVPLVVRSSWSEQPGTKVTSPVPKPRSLVGLELTKAVDGVEFDSDQAKVALLRVPDRPGIAARLFGEIAHQQVDVDLIIQSVHEGNTNDIAFTVIGGVLTKAEAVAEAIAPALRTHPTHTEEAEVLVEKRIAKIAIAGAGMIGRPGIAAKMFTTLAEAGVNIEMISTSEVKVSCVIDQKDTDKAIEALCEAFEVSSSPVETEKSSPESAPPVRGVALDRNQARIAIRHIPDRPGMAAKIFSVLAEKNISVDMIIQSQRCRIVEGVPRRDIAFTVAVGDALIAKKVLDDVSMAIGAGEVTVDSDIAKVSIVGAGMVGQPGVAARFFAALAQEKVNIQMIATSEIKISCVVAKNEGERALKAVHAAFELGGKDRVEVPA
>NC_011729.1|WP_015955238.1|3627868_3628774_-|AEC-family-transporter
MSALTALLPAVVPVAFIILIGILASRVLPLELQTLNQLTVYILAPALVADGLYQTTLSVQSAAGLLIGFTLISLLMYGLVWLISKFLKLSSDTHKSLLATSLLPNNGNMGLPVIAFALGEQGLERAIIYMIGSSILLFGIAPALLKGNGFNYGLRLTLKLPLIWAMIGGLSLRLFSIQLPLGLDTAIEQLGASAIPLALIILGMQLSHTNFQLRKYEILATGMRLFFAPLMAYGVGIILGLQGLDLQVLILQTAMPAAVNSVVLVTEFGGDANKVARTIVVTTIASFWTLPIVLWLSNPNF
>NC_011729.1|WP_015955237.1|3625894_3627598_-|alpha/beta-hydrolase
MILATIKSPKTAPKFKLRLKKLSVILGVMGAVVTGNPVKAAENIFLTYGPFKLTLRVESLELFAEENRVNQNLAFYFRRTTEEQQAEFREALTKRADIDPVLLSRFFNTEIGEDILTRFGNYITIERDGNGKHGLRAAIVQAAFDPEEGLTLLNVIRKFPTNIQLRGEELLAFSQLVERVVTATITFTDVMAKLSSQEAQTETPVDFSQLPDLRQPGSFRTEKTVMNLNDTTRNRRFYTIIYKPQNLTSNNTPVIIFSHGLASRPEDFESLAQHLASYGFVIALPQHPGSDYQQVQAFIAGFSRQIFDPNEFINRPLDISYVIDELQRLNSSEFEGRLDLENVGVGGHSFGGYAALAVAGAEIDFDHLQKDCDNQFGGLNTSLLLQCRALNLPRQVYNFKDPRVKAVFASNPVNSSIFGPQGLGKIQIPVGFGSGNFDPATPAVYEQVRSFVWLTTPDKYLGLAEGQAHVDFSQLDAGITQVIDSVPQLTLPSPELLQSYRNAMGVAFFKVHLSQNPQYRPYLSASYAAYLSQNEPFRLFLISNASRPGLDQAIANFIARHGRLVRE
>NC_011729.1|WP_157867618.1|3624866_3625709_+|hypothetical-protein
MLNFPPPPPPPSAGNQVLNQLAEYYRQLVDYHQQAAELAAQQLAHIEALLNPILSDIYPSNFHSGEDNECLEDITPLLELPSSDELEIDEDEETLIGQEESTITDDLIQILESNRGKVLHIEYIVRKLYGIVPSQDLLEVTQATKKLLEEGAKEQKWYAMPDSPECWTIDLKEFPDLFISNSKKISSSNKNLAHLPYCSRLPYSEKLAKYDSTGAAISACLQSNYPHTMTTLEVLDWLYPEGVPEARRKKASEAINNVLSKGVGLKGWQKVGPGLYRWTG
>NC_011729.1|WP_015955234.1|3623071_3624829_+|arginine--tRNA-ligase
MISLIEQLKTRFIQALKTAFDQDFSDLEGLVVPATNPKFGDYQSNVALSLAKPLKQPPRTIAEQIIKALDISDLCEPPQIAGAGFINLTLKANFLENLLAKIQKDSRLGVEKASPSARVIVDFSSPNIAKEMHVGHLRSTILGDCIARVLEFRGHDVLRLNHVGDWGTQFGMLIAYLREVYPEALTTADALNLGDLVAFYKKAKVRFDEDETFKETARKEVVKLQAGAKDTRHAWQLLCDQSRREFQVIYNILDVNLTERGESFYNPLLPEIVGQLDEEGLLTEDQGAKCVFLEGFTNKEGNPLPLIVQKSDEGYNYATTDLAALKYRIKEDKAERIIYVTDAGQANHFAQVFQVAKKAGIIPENIEVVHVAFGVVKGEDGKKLKTRSGDTIKLKDLIDEAVAYARRDLEKRLAEDDRKESKDFINHVSQVVGISAIKYADLSQNRISDYVFSYDKMLALQGNTAPYMLYAYARIQSISREGNIDFEKLDEKAKVILSEETELALGKYLLQFTEVIEDVEINLLPNRLCEYLYELSKKFNKFYENCPVLKSEDPIKTSRLILCDLTARTLKLGLSLLGIAVVERM
>NC_011729.1|WP_157867439.1|3638570_3640025_-|hypothetical-protein
MGQLDSLFKGLGNYITVTFWLMKFMDLFNPIVPEERQHPHFRFMIQPDFCKPEIEVIKSWADGFIDRDHKFVKEFQTTFNSSFWELYLCACFKELGCTVDFSYETPDFVISSPYGDFIAEATTANEPDGFRPEWDKNVELLDQTSTEDILRLSTIRLSNAISKKYNKYINKYSKLSHVQNQPFVICVSPFDQPFFYFQDSLAIVRVLYAYEASLTVPGTEEGEFIFIGESRSFSVQKSPGVNIKLGLFTDDRMAEVSAIIFNNRATISKVRALAKEGSYPVIFMGSRIVQSGDMTGCQRFVAPRPNYQETILDGLHILINPLAKHPLDLKMFENREVAIHNYEPQTDRYFSEFPDGFLLQRICHAIVSKENTINFKRSLCEQPYQELPPETWAEDDLIYVGGHNGRFYKNHMAHYRGWTIVVFFDSISEEWNALTVKKLCYNIPQFMQANQDNSIASTDISEWFTTKEEAYAAIKQEIDNISQD
>NC_011729.1|WP_015955246.1|3640331_3640736_+|IS200/IS605-family-transposase
MHRNFTQLYVHCVWATWDRLPLITPDIQEIIYNSITRQCNQLNCQVIAVGGISDHIHLLTSFPTTITLSKLIGEAKGSSSHFITHEIKPNQFFKWQGGYGVFSVSHSNLNQVANYIRNQPQHHQQKQLISNWEI
>NC_011729.1|WP_015955247.1|3640752_3641712_-|GDP-mannose-4,6-dehydratase
MTKTALICGVSGQDGAYLAQLLLNKGYQIWGTSRDAQMSSFKNLVRLGIKEQIKLTSMALNDFRSVLQVLLKVEPDEVYNLAGQTSVGLSFEQPVETLESIATGTLNLLEAIRFTGAPIKFYNAGSSECFGDIGDTSATETTPFRPRSPYAVAKSTAFWEVANYREAYGIFACSGILFNHESPLRPERFVTQKIIATACRIAQGSQETLHLGNISVERDWGWAPEYVEAMYLMLQHDHPDDYVIATGESSKLEDFVAQVFTCLGLNWQDHVVTDKSLFRPTDLAISRGNPAKARNQLGWQAQYKMRDVVKMMVEDKQNS
>NC_011729.1|WP_015955248.1|3641853_3643083_-|glycosyltransferase
MKILMLCCNFPYPPTKGKSQMRTFNLLKYLSEHHQITLISQSPQDLPPADVEKLQQWVNLIVFPATPQLQATGGLLATAKQIKTLIKQGIFPKELTHYSQNLQNWLDRVVKTNKFDLITCEDSPNEVYIRPQWRQDIPTVVNIHRSLYGKTKHQLQSYSSTYELQKQLNLPILRWYEQQYSAKFSALVTTTQEDRRILKTINPEAHITVIPNGLDLNQYPRRLSNNGGQRLVFIGAMDKPANIDAACFLSLEIFPAIRQRYPETTLEIVGTDPAAEILAFANLPGIKVTGQVSSIVDYLHWATVCVIPIRKGSGIKYKTLEAMAAGIPVVASDIALEGLTVDGSGVPPRAMRANKVDEYVYAVGRLFEDCKLREKLSLNGRIMVESEYTWTQMGQRYEQVLLNLQGSKL
>NC_011729.1|WP_015955249.1|3643457_3646061_+|GTP-binding-protein
MTDDELLQIIQQAIEEKAETLDLSFKKLETLPPQIEQLTHLRYLDLRNNKLTTLPPQIGKLKKLTSLNLTDNQLSALPPEIGQLNNLSRLHLSYNKLTNLPEEIGQLTHLSELYLSHNFLETLPTTLNHLVNINRLSLSYNQFTSLPPQIKGLISLSWWDLNNNQLTTLPPEIGQLKSLNQLDLGYNQLTTLPPEIGELYRLTSLDVSYNQLISLPPEIQFLINLDSLTLSNNQLATLPPEIGFLSNLISLNLSYNQLTSIPPEIGQLTKLIQFRLSHNKIETLPPEIRCLTQLTSLMLKNNQLLALPLELIQLVQFFKLTQLDVQENLLTIPPEIIWRKDEPDLIVNFYLHQLVEKKHPLNEAKVLLVGEGSVGKTSLMRRLLYDTFTANQPKTDGINIVPWNIDIGGNNVKLNIWDFGGQEIYHATHQFFLTKRSLYILVLNNRQNEEQNRVEYWLKLIQTFGGDSPIIIVGNRRDEHLLDLNQPCLRDKYKNITAFIQTSCKTGDGFPELKEKIIQEISQLKEVFEEVRVEWVSVKKQLENLKGRNWDYIPYSHYQKMCEAQKIIDDQSQRILIRFLHDLGVVLNFQEDTRLEDTTILNPTWVTKGVYKILNDNTLMTHYKGILLTGMLERILDNPLRYPKEKHQFIIDMMCKFELCFKLEGSGEDEYLIPDLLPKAEQYTGEWENALVFQYHYQILPSNIISRFMVKLNHLIYQQTYWRSGVVLAYHQNKALIKADREDKKILIAIQGLEETRPEFRQIIRSIFELIHQSISGIQVSEYLVLPHSNPAILIDYQYLLNLKKLGEESFIPHGSNERVRVNELLTQFDQYPRIHQSPSSPTLKKEKNLIAKTVKLLFSHNSSDEK
>NC_011729.1|WP_015955250.1|3646093_3646996_-|lipid-kinase
MTKRALLMVNRHARKGQKSLAMAVDILNDLDFELITVPIKNPQQLAESVRKHGSRVDLVIVGGGDGTLNAVVDSLVEQQLPLGILPLGTANDLARTLAIPLSIPQACKVIAAGHQKSIDLGWVNGKYFFNVASVGLSVNITQKLTRGAKRRWGILAYGFTALQVLSQSHALRAEIRLNNESIAVKTVQIAIGNGSYYGGGMKVAEGATIDDQWLDLYSLELKSWWQIFPLLWRFPQGQHGLLPWVRTLKSREIELYTDKPYDINTDGELTACTPATFRVIPHALSVFVPEFKQEVNLEYN
>NC_011729.1|WP_015955251.1|3647047_3648757_-|CHAT-domain-containing-protein
MYNKATPCLSLAIARLNQAGPDNFAIWVIRSPLPGGYVHYDCIWPESLTRQWLTWQEMFSLQYEPHIPSFHRSADLLNQPALTFSTTEEGGYGGQLMQQLGISLWQWMFDGPIRQSLAQSRGVAFGKNQSLRVRLEIRDPNLVPLPWEIMQPEIGTQAISLSPQILFSRTTANVEPLQPQANRDSLHILLVVGEDINPPTLAPGIGLSSSYLSTQPDQTLSNTSYSLELQEEASALIQVIAQSNQVNGVNPPPSCASVKVDPLIQPTAIQLTEALDGGNYNVLFYAGHGMPGPDGGLLFLRSNAVMNGTELAQVLVRNRVTLALFNACWGAQPAQEGQRTIERSSLAEVLIHHGVPAVLGMRDAIADQEALSFIQAFTKALTQRMPIDQAVRIARQQLLTVYKFNQPAWTLPILYMHPEFDGKLLIKIDEGITELPVTQLDVSRETFPVAYLRLLSKKERISQIYGGLMRVGRHQENDLVIKERWVSQRHGEIICREQTSNAGNQYTYYLRDFSRFGTFIYDANNWQRVHHQEIPLTSGVRLKFGSLDGQIFEFIIENFNYSPVSPEDD
>NC_011729.1|WP_015955252.1|3648851_3650168_-|helix-turn-helix-transcriptional-regulator
MIPQPFLNTIATKHHLSKAELEVLSLAMEGESIGAIADLLKISEDAVRKRLSEVYHKFQIVGRGPVKLPQLQRQLMKQYQEQLKAQGDLALNISLGTSYHLTQPQINNSMDWDGAPDVSVFYGRATELALLKDWIVNQGCRLVSLLGIGGVGKTVLGVRLAHQIQEHFESLIWRSLYFAPSLQEFLDQLIKVLSLNKETPNLNTVDQQISWLVSYFRSYRCLVIVDGFESILSRGKLAGTYREGYDNYGKFLKRIGEEPSKSCVIITSREKINEISYLQGETSRVKSLKVEGLGEDARFLLKEKGLSAEENWQQLIEDYRGNPLMLKLVAATIQEVFDGNVKDFLETTFFTHDVTGFVRELLDQLSELEAKIIVQMANEKEPIILQQLRENLSGVSSQDVISAVASLRQRALVEKSRDGFTLPPVIRATLGNGYHLPN
>NC_011729.1|WP_015955253.1|3650623_3651904_+|glycosyltransferase-family-1-protein
MSFNKRIAFISVHGDPAIDIGKEEAGGQNVYVRQVGEALAKQGWQVDMFTRKADATQPAIVEHSPNCRTIRLVAGPETFIPRDKLFSYLPEFVEQLRSFQRDNNIQYSLVHTNYWLSAWVGMELKKYQPIQQIHTYHSLGAVKYQSVSDIPPIATTRLEVEKACLETAARIVATSPQEQDHMRQLMSQKGNIDIIPCGTDIERFGAVSSSEARLKLGIPRSSLVVLYVGRFDQRKGIETLVRAMGHSIFPGLADIRLIIVGGSRPGQSDGIERERIEAIVDELGLRDYTTFPGQIDHETLPYYYAAANLCVVPSHYEPFGLVAIEAMAAGTPVVASGVGGLQFTVVHEKTGLLCPPKDDKAFAQAIDSILSKPTWQAKLGKSARKRVETLFSWDGVAQQLSNLYLSLVDVPTAKPTVNISLKQVSA
>NC_011729.1|WP_015955254.1|3652087_3653623_-|anthranilate-synthase-component-I
MAQIGNHFSQPDTTFNPSIPANVASADDPLTLISSTVQPIQPWYWRKLPLCDRSGSQVFKTLFLQTTSKQIPVATLLESPGNSTHLARYSLCAGSPRIYKGQFQLWTPPIGNSLGFLRRLLALAPSQSTLLNSMLPPELPFTGGWLGWLGYDVAWEIEQLPQYNSDPLPFPIAYWYEPECFAILDHQQQILWLAASDDSQLDRMESQLEDSQRENYNPLNTLSTTPITPIFQMTKQEYITLVQQAKKYIQAGDIFQTNLSLRFETHTPCDSWSIYQALQQINPSPFASYWQTPWGAMISCSPERLIQRSGQKVQTRPIAGTRCRGMNLDHDQQLEAELIANLKERAEHIMLVDLERNDLGRVCQWGSVKVDEFLTIERYSHVMHLVSNIVGTLHPNFDSIDLIRGVFPGGTITGCPKVRCMEIIEELEPVKRNLFYGSCGYLDWRGNLDLNILIRTLLYSKTGDLSSGAKVWGQVGAGIVADSDPEKEWYESLHKAQAQLDALRLAQKLNS

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Crispr_ID: NC_011729_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_28

3643533-3643694

Orphan

N:A

Consensus_repeat	Method
AATCAACTGACAACTTTACCCCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_011729_28

>merge|NC_011729|28|3643533-3643694|CRISPRCasFinder
AAAAAACTAGAAACCTTACCCCCACAGATTGAACAATTGACCCATCTGCGTTATCTTGACTTACGCAATAATAAGCTGACAACTCTACCCCCACAGATAGGAAAACTCAAAAAATTAACATCCCTGAACTTGACAGATAATCAACTCAGTGCATTACCGCCA

>NC_011729|28|26|3643533-3643694|CRISPRCasFinder
AAAAAACTAGAAACCTTACCCCC	ACAGATTGAACAATTGACCCATCTGCGTTATCTTGACTTACGCAAT
AATAAGCTGACAACTCTACCCCC	ACAGATAGGAAAACTCAAAAAATTAACATCCCTGAACTTGACAGAT
AATCAACTCAGTGCATTACCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955244.1\|3635825_3638024_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226466
NC_011729.1\|WP_157867439.1\|3638570_3640025_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955246.1\|3640331_3640736_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_011729.1\|WP_157867441.1\|3655342_3655534_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955248.1\|3641853_3643083_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_011729.1\|WP_015955241.1\|3631827_3634671_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_015955239.1\|3628976_3630782_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236018
NC_011729.1\|WP_015955258.1\|3656819_3657227_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955251.1\|3647047_3648757_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NC_011729.1\|WP_015955240.1\|3630863_3631637_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955250.1\|3646093_3646996_-\|lipid-kinase	unknown	unknown	gnl\|CDD\|183857
NC_011729.1\|WP_015955242.1\|3634836_3635070_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041238282.1\|3654108_3654444_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955254.1\|3652087_3653623_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|235651
NC_011729.1\|WP_015955256.1\|3655625_3655814_+\|photosystem-II-reaction-center-protein-PsbZ	unknown	unknown	gnl\|CDD\|167400
NC_011729.1\|WP_015955257.1\|3655910_3656513_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NC_011729.1\|WP_015955253.1\|3650623_3651904_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340830
NC_011729.1\|WP_015955243.1\|3635201_3635414_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955247.1\|3640752_3641712_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NC_011729.1\|WP_015955252.1\|3648851_3650168_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015955244.1\|3635825_3638024_+\|hypothetical-protein	gnl\|CDD\|226466	COG3957, COG3957, Phosphoketolase [Carbohydrate transport and metabolism].	0
NC_011729.1\|WP_015955246.1\|3640331_3640736_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.17892e-29
NC_011729.1\|WP_015955248.1\|3641853_3643083_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	7.38778e-59
NC_011729.1\|WP_015955241.1\|3631827_3634671_-\|TIR-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.51999e-117
NC_011729.1\|WP_015955247.1\|3640752_3641712_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	1.24061e-159
NC_011729.1\|WP_015955251.1\|3647047_3648757_-\|CHAT-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	2.07043e-10
NC_011729.1\|WP_015955250.1\|3646093_3646996_-\|lipid-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	7.29617e-155
NC_011729.1\|WP_015955257.1\|3655910_3656513_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.98364e-82
NC_011729.1\|WP_015955254.1\|3652087_3653623_-\|anthranilate-synthase-component-I	gnl\|CDD\|235651	PRK05940, PRK05940, anthranilate synthase component I.	0
NC_011729.1\|WP_015955256.1\|3655625_3655814_+\|photosystem-II-reaction-center-protein-PsbZ	gnl\|CDD\|167400	PRK02576, psbZ, photosystem II reaction center protein PsbZ.	3.40729e-20
NC_011729.1\|WP_015955253.1\|3650623_3651904_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	2.77435e-162
NC_011729.1\|WP_015955239.1\|3628976_3630782_-\|aspartate-kinase	gnl\|CDD\|236018	PRK07431, PRK07431, aspartate kinase; Provisional.	0
NC_011729.1\|WP_015955252.1\|3648851_3650168_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.49173e-07

>NC_011729.1|WP_015955248.1|3641853_3643083_-|glycosyltransferase
MKILMLCCNFPYPPTKGKSQMRTFNLLKYLSEHHQITLISQSPQDLPPADVEKLQQWVNLIVFPATPQLQATGGLLATAKQIKTLIKQGIFPKELTHYSQNLQNWLDRVVKTNKFDLITCEDSPNEVYIRPQWRQDIPTVVNIHRSLYGKTKHQLQSYSSTYELQKQLNLPILRWYEQQYSAKFSALVTTTQEDRRILKTINPEAHITVIPNGLDLNQYPRRLSNNGGQRLVFIGAMDKPANIDAACFLSLEIFPAIRQRYPETTLEIVGTDPAAEILAFANLPGIKVTGQVSSIVDYLHWATVCVIPIRKGSGIKYKTLEAMAAGIPVVASDIALEGLTVDGSGVPPRAMRANKVDEYVYAVGRLFEDCKLREKLSLNGRIMVESEYTWTQMGQRYEQVLLNLQGSKL
>NC_011729.1|WP_015955247.1|3640752_3641712_-|GDP-mannose-4,6-dehydratase
MTKTALICGVSGQDGAYLAQLLLNKGYQIWGTSRDAQMSSFKNLVRLGIKEQIKLTSMALNDFRSVLQVLLKVEPDEVYNLAGQTSVGLSFEQPVETLESIATGTLNLLEAIRFTGAPIKFYNAGSSECFGDIGDTSATETTPFRPRSPYAVAKSTAFWEVANYREAYGIFACSGILFNHESPLRPERFVTQKIIATACRIAQGSQETLHLGNISVERDWGWAPEYVEAMYLMLQHDHPDDYVIATGESSKLEDFVAQVFTCLGLNWQDHVVTDKSLFRPTDLAISRGNPAKARNQLGWQAQYKMRDVVKMMVEDKQNS
>NC_011729.1|WP_015955246.1|3640331_3640736_+|IS200/IS605-family-transposase
MHRNFTQLYVHCVWATWDRLPLITPDIQEIIYNSITRQCNQLNCQVIAVGGISDHIHLLTSFPTTITLSKLIGEAKGSSSHFITHEIKPNQFFKWQGGYGVFSVSHSNLNQVANYIRNQPQHHQQKQLISNWEI
>NC_011729.1|WP_157867439.1|3638570_3640025_-|hypothetical-protein
MGQLDSLFKGLGNYITVTFWLMKFMDLFNPIVPEERQHPHFRFMIQPDFCKPEIEVIKSWADGFIDRDHKFVKEFQTTFNSSFWELYLCACFKELGCTVDFSYETPDFVISSPYGDFIAEATTANEPDGFRPEWDKNVELLDQTSTEDILRLSTIRLSNAISKKYNKYINKYSKLSHVQNQPFVICVSPFDQPFFYFQDSLAIVRVLYAYEASLTVPGTEEGEFIFIGESRSFSVQKSPGVNIKLGLFTDDRMAEVSAIIFNNRATISKVRALAKEGSYPVIFMGSRIVQSGDMTGCQRFVAPRPNYQETILDGLHILINPLAKHPLDLKMFENREVAIHNYEPQTDRYFSEFPDGFLLQRICHAIVSKENTINFKRSLCEQPYQELPPETWAEDDLIYVGGHNGRFYKNHMAHYRGWTIVVFFDSISEEWNALTVKKLCYNIPQFMQANQDNSIASTDISEWFTTKEEAYAAIKQEIDNISQD
>NC_011729.1|WP_015955244.1|3635825_3638024_+|hypothetical-protein
MTISTAIPEFCQGIKHFGQQLPDFEKYGKQAAIKEGQNAIASSNDPIAVYQTLLAADALRYLTLQTTATKESGHPGGFASIAEAIAALVMLGHKNIITEVGHHAPGFYSTMFLDRSLEDMGIKTVQQLGERFREMHGLLGHLSGQIPGLLNPAGPLGQGQHFAMAGAKLHRDFLFPVTIGDGGIGEPYVMSSFSHFHTAYPDVTNFLPILVWNGYSQEHHSMVSTKPNEEMIKYWQGNGFQEVILVNAKDFDDANQPGDYVDSTKFSFAKRLEFTQAVLEATDKAAKSAFSGKLTVLIVKQLKGAGVHKRGAQSHNLYPGDSLEKDYIVNALQERALSPEAWELVRTNFERSAGGPASHHVVTEKELPLPELGQLPLSEYPVKGDKKVATTAMGELVVHVGKKDPNFVITNADGNAASGINNINIGLKIIHPTVDDIYYQGPKGQVYEPLSEDACAGLAVGLALFGARTLWCSYESFAINGLPIWQTVTQAMAELRRPTPSTITLFTAGALEQGRNGWTHQRPEIENYFAAMMRNGNVFPLFPCDANSIQVCYEWALGTKNKGITITASKSALPVRTSFEQTRQGLQDGGVVLHETEGKKQVVFAVIGDMTLIPVFDAAQHLEDQGIGVRIVSVINPRRLYRPDDVMWHTCTEADSHFLDDEGFERLFGGDALIGVTGGTSAMLEPVMLRSTSKRDVFAWKRGETAASAGEIMAFNGLTAEALTKRALSLVG
>NC_011729.1|WP_015955243.1|3635201_3635414_-|hypothetical-protein
MINYFTCLGFVAICSMLFWGSDSAFALADSTVLSSQFSLNNHQTNPEKNQLLSDFKGVCDVRASDPNCRE
>NC_011729.1|WP_015955242.1|3634836_3635070_-|hypothetical-protein
MTPKLVRYYLKVSSLVLLFLMGFVGVMGMIDVLKLSPNDMTGKPETPNFSPSIKKHCKVQPQLPLCVKLGSLSMDNG
>NC_011729.1|WP_015955241.1|3631827_3634671_-|TIR-domain-containing-protein
MTDVFISYSRKDQEFVKILHQALSQSHRDSWIDWQNIPKGTQWWQEIESGIEGANTFIFVISPDSIKSEVCGLEINHAINNGKRLLPIIRREVSEFDDNNTAHQALKDHNWLFFREEDDFQTSFEELIKTLDTDLNYVHQHTRLLVRAKEWDKKGRRDSFLLRGEELKEAEQWLEEAQIRFQNYQQQFKGKRQDPNPLLTEQHLHYIRKSREIEDAEHQAKRILLEAKTKADRLIKIGSGISIGLLTLSVLLAFKVQLQLQATNIKVDVIESQQLWKEGKIVEALEEALQAAKQLNPILNLSPHLKDQAEKQTKIALQQTVYDTIKERTRFKEHQDYIWGVSFSRDGKLLASGSTDKTIKLWDVTKGKLLYTLTGHTDGISSVSFSPDGKALVSGSDDNTIILWDVMTGKKLKTLKGHQDSVFSVSFSPDGKTVASGSRDNTIILWDVMTGKKLKTLKGHQNWVWSVSFSPDGKTLASGSVDKTIILWDIARGKSLKTLRGHEDKIFSVSFSPDGKTLASASADNTIKLWDIASENRVITLKGHQNWVMSVSFSPDGKTLASGSNDNTIKLWDVVTGNEIKTFSGHQHLVWSVKISPDGKTLASSSWDKNIILWDMTTNKEIKTFSKHQDLVSSVSISPAGKILASGSNDKSIILWDITTGKQLNTLKGHQKAIYSLSFNKDGKILASGSDDHRIILWNVTTGKPLKILKGHQEAVYSISLSPDGKILASGTNKNIILWDVTTGKPIKSFKENKEIIYSISLSPDGKILASGTNKNIILWDVTTGKKLGTLEGHQELVFSLSWSEDRKILASGSYDNTLKLWDIATRKELKTLKGHQSVINSVSFSPDGKTVASGSADKTVKLWDIDTGKPLKTFWGHQDLVNSVSFSPDGKTVVSGSADKTVKLWQFEGNFDLNHLIIKGCKSINTYLNSNPTKNELREFCQLSFQ
>NC_011729.1|WP_015955240.1|3630863_3631637_-|hypothetical-protein
MKILLTILLIIFFLIAYPIPTQAETLTPPLNQYTQWTYKPTLKKAKEDLIYPEWMEGKWQVTSILKEQLAPFAPEIVTPGFENSRQYLNQPVEFEVSFEKNHRLRHYNSFFPIAINKQLSIIADRQFNGLNIAKAYLGEKGVLSVKVDPDNPNRQITSLPENRQLISTITKRGSKTPTTDQFITTEVTQQFFRTEISVYLNEVETTTAYQLLDSGDINAQQITAIYLSPKDPNYFKATGSPVALYRYQLQLHSQKRI
>NC_011729.1|WP_015955239.1|3628976_3630782_-|aspartate-kinase
MALIVQKYGGTSVGSVDRIQAVAGRVKKTVDGGNTVVVVVSAMGKTTDGLVNLAKEISSNPSRREMDMLLSTGEQVSIALMSMALQELGQAAISMTGAQVGIVTEAEHSRARILEIKPDRIQSHLNGGKVVVVAGFQGISNSDELEITTLGRGGSDTSAVALAAALKADSCEIYTDVPGILTTDPRLVPEAQLMDEITCDEMLELASLGAKVLHPRAVEIARNYGVPLVVRSSWSEQPGTKVTSPVPKPRSLVGLELTKAVDGVEFDSDQAKVALLRVPDRPGIAARLFGEIAHQQVDVDLIIQSVHEGNTNDIAFTVIGGVLTKAEAVAEAIAPALRTHPTHTEEAEVLVEKRIAKIAIAGAGMIGRPGIAAKMFTTLAEAGVNIEMISTSEVKVSCVIDQKDTDKAIEALCEAFEVSSSPVETEKSSPESAPPVRGVALDRNQARIAIRHIPDRPGMAAKIFSVLAEKNISVDMIIQSQRCRIVEGVPRRDIAFTVAVGDALIAKKVLDDVSMAIGAGEVTVDSDIAKVSIVGAGMVGQPGVAARFFAALAQEKVNIQMIATSEIKISCVVAKNEGERALKAVHAAFELGGKDRVEVPA
>NC_011729.1|WP_015955250.1|3646093_3646996_-|lipid-kinase
MTKRALLMVNRHARKGQKSLAMAVDILNDLDFELITVPIKNPQQLAESVRKHGSRVDLVIVGGGDGTLNAVVDSLVEQQLPLGILPLGTANDLARTLAIPLSIPQACKVIAAGHQKSIDLGWVNGKYFFNVASVGLSVNITQKLTRGAKRRWGILAYGFTALQVLSQSHALRAEIRLNNESIAVKTVQIAIGNGSYYGGGMKVAEGATIDDQWLDLYSLELKSWWQIFPLLWRFPQGQHGLLPWVRTLKSREIELYTDKPYDINTDGELTACTPATFRVIPHALSVFVPEFKQEVNLEYN
>NC_011729.1|WP_015955251.1|3647047_3648757_-|CHAT-domain-containing-protein
MYNKATPCLSLAIARLNQAGPDNFAIWVIRSPLPGGYVHYDCIWPESLTRQWLTWQEMFSLQYEPHIPSFHRSADLLNQPALTFSTTEEGGYGGQLMQQLGISLWQWMFDGPIRQSLAQSRGVAFGKNQSLRVRLEIRDPNLVPLPWEIMQPEIGTQAISLSPQILFSRTTANVEPLQPQANRDSLHILLVVGEDINPPTLAPGIGLSSSYLSTQPDQTLSNTSYSLELQEEASALIQVIAQSNQVNGVNPPPSCASVKVDPLIQPTAIQLTEALDGGNYNVLFYAGHGMPGPDGGLLFLRSNAVMNGTELAQVLVRNRVTLALFNACWGAQPAQEGQRTIERSSLAEVLIHHGVPAVLGMRDAIADQEALSFIQAFTKALTQRMPIDQAVRIARQQLLTVYKFNQPAWTLPILYMHPEFDGKLLIKIDEGITELPVTQLDVSRETFPVAYLRLLSKKERISQIYGGLMRVGRHQENDLVIKERWVSQRHGEIICREQTSNAGNQYTYYLRDFSRFGTFIYDANNWQRVHHQEIPLTSGVRLKFGSLDGQIFEFIIENFNYSPVSPEDD
>NC_011729.1|WP_015955252.1|3648851_3650168_-|helix-turn-helix-transcriptional-regulator
MIPQPFLNTIATKHHLSKAELEVLSLAMEGESIGAIADLLKISEDAVRKRLSEVYHKFQIVGRGPVKLPQLQRQLMKQYQEQLKAQGDLALNISLGTSYHLTQPQINNSMDWDGAPDVSVFYGRATELALLKDWIVNQGCRLVSLLGIGGVGKTVLGVRLAHQIQEHFESLIWRSLYFAPSLQEFLDQLIKVLSLNKETPNLNTVDQQISWLVSYFRSYRCLVIVDGFESILSRGKLAGTYREGYDNYGKFLKRIGEEPSKSCVIITSREKINEISYLQGETSRVKSLKVEGLGEDARFLLKEKGLSAEENWQQLIEDYRGNPLMLKLVAATIQEVFDGNVKDFLETTFFTHDVTGFVRELLDQLSELEAKIIVQMANEKEPIILQQLRENLSGVSSQDVISAVASLRQRALVEKSRDGFTLPPVIRATLGNGYHLPN
>NC_011729.1|WP_015955253.1|3650623_3651904_+|glycosyltransferase-family-1-protein
MSFNKRIAFISVHGDPAIDIGKEEAGGQNVYVRQVGEALAKQGWQVDMFTRKADATQPAIVEHSPNCRTIRLVAGPETFIPRDKLFSYLPEFVEQLRSFQRDNNIQYSLVHTNYWLSAWVGMELKKYQPIQQIHTYHSLGAVKYQSVSDIPPIATTRLEVEKACLETAARIVATSPQEQDHMRQLMSQKGNIDIIPCGTDIERFGAVSSSEARLKLGIPRSSLVVLYVGRFDQRKGIETLVRAMGHSIFPGLADIRLIIVGGSRPGQSDGIERERIEAIVDELGLRDYTTFPGQIDHETLPYYYAAANLCVVPSHYEPFGLVAIEAMAAGTPVVASGVGGLQFTVVHEKTGLLCPPKDDKAFAQAIDSILSKPTWQAKLGKSARKRVETLFSWDGVAQQLSNLYLSLVDVPTAKPTVNISLKQVSA
>NC_011729.1|WP_015955254.1|3652087_3653623_-|anthranilate-synthase-component-I
MAQIGNHFSQPDTTFNPSIPANVASADDPLTLISSTVQPIQPWYWRKLPLCDRSGSQVFKTLFLQTTSKQIPVATLLESPGNSTHLARYSLCAGSPRIYKGQFQLWTPPIGNSLGFLRRLLALAPSQSTLLNSMLPPELPFTGGWLGWLGYDVAWEIEQLPQYNSDPLPFPIAYWYEPECFAILDHQQQILWLAASDDSQLDRMESQLEDSQRENYNPLNTLSTTPITPIFQMTKQEYITLVQQAKKYIQAGDIFQTNLSLRFETHTPCDSWSIYQALQQINPSPFASYWQTPWGAMISCSPERLIQRSGQKVQTRPIAGTRCRGMNLDHDQQLEAELIANLKERAEHIMLVDLERNDLGRVCQWGSVKVDEFLTIERYSHVMHLVSNIVGTLHPNFDSIDLIRGVFPGGTITGCPKVRCMEIIEELEPVKRNLFYGSCGYLDWRGNLDLNILIRTLLYSKTGDLSSGAKVWGQVGAGIVADSDPEKEWYESLHKAQAQLDALRLAQKLNS
>NC_011729.1|WP_041238282.1|3654108_3654444_+|hypothetical-protein
MNQSRGNLQINWGLITKVILEGKQRQELGELPFTYYYQKSGSLIGSFFCGDEEGEFILFFNLNYPDSAVILQLIAQHCQVLKEEILVYPLDSQGIELYSTVTPEKYIILDL
>NC_011729.1|WP_157867441.1|3655342_3655534_+|hypothetical-protein
MLCSYSPTLQGSGKAIAIEKILPQLNRYKPDWWAMPTLQKERRLGGKSKSPIAIATKTLIAVK
>NC_011729.1|WP_015955256.1|3655625_3655814_+|photosystem-II-reaction-center-protein-PsbZ
MSIVFQIALAALVFFSFVMVIGVPFAYAAPQYWDQSKPLLWVGSGIWTILVIVVAVLNFFVI
>NC_011729.1|WP_015955257.1|3655910_3656513_+|6,7-dimethyl-8-ribityllumazine-synthase
MAVFEGNFTFNPQQLRFAIVIGRFNDLVTGKLLSGCQDCLKRHGIDVDPNGNQVDYAWVPGSFELPLVARQLAISGRYDAIICLGAIIRGQTPHFDYVASETAKGIAAIGFQTGIPVIFGVLTTDTMQQALERAGIKSNLGWQYGQDALEMAALMGQLRGLTPDYSQSDNKIVPALPVSSPGQLNPTAIPQQQSDPKNQS
>NC_011729.1|WP_015955258.1|3656819_3657227_+|hypothetical-protein
MRPNKAIKIDLNNDYPCPCRRRGRLMPIILTEAFGCDRCQKIFVLQDNNQVIEQLSSTYPYKQMWRWTGFRWVTVHPRIGETYLSVMVGIILLMLFVVLPLVLHSPASVSMIFWIGIAVLVLILPVILFWLARGR

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Crispr_ID: NC_011729_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_29

3643878-3644383

Orphan

N:A

Consensus_repeat	Method
AATCAACTGACAACTTTACCCCC	CRISPRCasFinder

7 spacers

The CRISPR arrays of NC_011729_29

>merge|NC_011729|29|3643878-3644383|CRISPRCasFinder
AATCAATTCACATCCTTACCTCCTCAGATCAAAGGATTAATCAGTCTTAGTTGGTGGGATCTCAATAACAATCAACTGACAACTTTACCCCCAGAAATTGGACAACTCAAAAGCTTAAATCAATTAGACCTAGGATATAATCAACTGACAACTTTACCTCCTGAAATTGGAGAACTTTACCGTCTCACTTCCCTTGATGTCAGTTATAATCAATTGATAAGTCTTCCTCCAGAAATTCAATTCCTGATTAACCTTGATTCTCTCACTCTCAGTAATAATCAACTGGCAACTTTACCTCCTGAAATTGGATTTTTAAGTAATCTTATCTCTCTTAATCTCAGTTACAATCAACTGACAAGTATTCCTCCCGAAATTGGACAATTAACTAAGCTGATTCAGTTCAGATTGAGCCATAATAAAATAGAAACTTTACCTCCTGAGATTAGATGCTTGACTCAACTCACCTCATTAATGTTAAAAAATAATCAACTTCTAGCCTTACCCTT

>NC_011729|29|27|3643878-3644383|CRISPRCasFinder
AATCAATTCACATCCTTACCTCC	TCAGATCAAAGGATTAATCAGTCTTAGTTGGTGGGATCTCAATAAC
AATCAACTGACAACTTTACCCCC	AGAAATTGGACAACTCAAAAGCTTAAATCAATTAGACCTAGGATAT
AATCAACTGACAACTTTACCTCC	TGAAATTGGAGAACTTTACCGTCTCACTTCCCTTGATGTCAGTTAT
AATCAATTGATAAGTCTTCCTCC	AGAAATTCAATTCCTGATTAACCTTGATTCTCTCACTCTCAGTAAT
AATCAACTGGCAACTTTACCTCC	TGAAATTGGATTTTTAAGTAATCTTATCTCTCTTAATCTCAGTTAC
AATCAACTGACAAGTATTCCTCC	CGAAATTGGACAATTAACTAAGCTGATTCAGTTCAGATTGAGCCAT
AATAAAATAGAAACTTTACCTCC	TGAGATTAGATGCTTGACTCAACTCACCTCATTAATGTTAAAAAAT
AATCAACTTCTAGCCTTACCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955244.1\|3635825_3638024_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226466
NC_011729.1\|WP_157867439.1\|3638570_3640025_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955246.1\|3640331_3640736_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_011729.1\|WP_157867441.1\|3655342_3655534_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955248.1\|3641853_3643083_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_011729.1\|WP_015955241.1\|3631827_3634671_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_015955239.1\|3628976_3630782_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236018
NC_011729.1\|WP_015955258.1\|3656819_3657227_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955251.1\|3647047_3648757_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NC_011729.1\|WP_015955240.1\|3630863_3631637_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955250.1\|3646093_3646996_-\|lipid-kinase	unknown	unknown	gnl\|CDD\|183857
NC_011729.1\|WP_015955242.1\|3634836_3635070_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041238282.1\|3654108_3654444_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955254.1\|3652087_3653623_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|235651
NC_011729.1\|WP_015955256.1\|3655625_3655814_+\|photosystem-II-reaction-center-protein-PsbZ	unknown	unknown	gnl\|CDD\|167400
NC_011729.1\|WP_015955257.1\|3655910_3656513_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NC_011729.1\|WP_015955253.1\|3650623_3651904_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340830
NC_011729.1\|WP_015955243.1\|3635201_3635414_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955247.1\|3640752_3641712_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NC_011729.1\|WP_015955252.1\|3648851_3650168_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015955244.1\|3635825_3638024_+\|hypothetical-protein	gnl\|CDD\|226466	COG3957, COG3957, Phosphoketolase [Carbohydrate transport and metabolism].	0
NC_011729.1\|WP_015955246.1\|3640331_3640736_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.17892e-29
NC_011729.1\|WP_015955248.1\|3641853_3643083_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	7.38778e-59
NC_011729.1\|WP_015955241.1\|3631827_3634671_-\|TIR-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.51999e-117
NC_011729.1\|WP_015955247.1\|3640752_3641712_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	1.24061e-159
NC_011729.1\|WP_015955251.1\|3647047_3648757_-\|CHAT-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	2.07043e-10
NC_011729.1\|WP_015955250.1\|3646093_3646996_-\|lipid-kinase	gnl\|CDD\|183857	PRK13057, PRK13057, lipid kinase.	7.29617e-155
NC_011729.1\|WP_015955257.1\|3655910_3656513_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.98364e-82
NC_011729.1\|WP_015955254.1\|3652087_3653623_-\|anthranilate-synthase-component-I	gnl\|CDD\|235651	PRK05940, PRK05940, anthranilate synthase component I.	0
NC_011729.1\|WP_015955256.1\|3655625_3655814_+\|photosystem-II-reaction-center-protein-PsbZ	gnl\|CDD\|167400	PRK02576, psbZ, photosystem II reaction center protein PsbZ.	3.40729e-20
NC_011729.1\|WP_015955253.1\|3650623_3651904_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	2.77435e-162
NC_011729.1\|WP_015955239.1\|3628976_3630782_-\|aspartate-kinase	gnl\|CDD\|236018	PRK07431, PRK07431, aspartate kinase; Provisional.	0
NC_011729.1\|WP_015955252.1\|3648851_3650168_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.49173e-07

>NC_011729.1|WP_015955248.1|3641853_3643083_-|glycosyltransferase
MKILMLCCNFPYPPTKGKSQMRTFNLLKYLSEHHQITLISQSPQDLPPADVEKLQQWVNLIVFPATPQLQATGGLLATAKQIKTLIKQGIFPKELTHYSQNLQNWLDRVVKTNKFDLITCEDSPNEVYIRPQWRQDIPTVVNIHRSLYGKTKHQLQSYSSTYELQKQLNLPILRWYEQQYSAKFSALVTTTQEDRRILKTINPEAHITVIPNGLDLNQYPRRLSNNGGQRLVFIGAMDKPANIDAACFLSLEIFPAIRQRYPETTLEIVGTDPAAEILAFANLPGIKVTGQVSSIVDYLHWATVCVIPIRKGSGIKYKTLEAMAAGIPVVASDIALEGLTVDGSGVPPRAMRANKVDEYVYAVGRLFEDCKLREKLSLNGRIMVESEYTWTQMGQRYEQVLLNLQGSKL
>NC_011729.1|WP_015955247.1|3640752_3641712_-|GDP-mannose-4,6-dehydratase
MTKTALICGVSGQDGAYLAQLLLNKGYQIWGTSRDAQMSSFKNLVRLGIKEQIKLTSMALNDFRSVLQVLLKVEPDEVYNLAGQTSVGLSFEQPVETLESIATGTLNLLEAIRFTGAPIKFYNAGSSECFGDIGDTSATETTPFRPRSPYAVAKSTAFWEVANYREAYGIFACSGILFNHESPLRPERFVTQKIIATACRIAQGSQETLHLGNISVERDWGWAPEYVEAMYLMLQHDHPDDYVIATGESSKLEDFVAQVFTCLGLNWQDHVVTDKSLFRPTDLAISRGNPAKARNQLGWQAQYKMRDVVKMMVEDKQNS
>NC_011729.1|WP_015955246.1|3640331_3640736_+|IS200/IS605-family-transposase
MHRNFTQLYVHCVWATWDRLPLITPDIQEIIYNSITRQCNQLNCQVIAVGGISDHIHLLTSFPTTITLSKLIGEAKGSSSHFITHEIKPNQFFKWQGGYGVFSVSHSNLNQVANYIRNQPQHHQQKQLISNWEI
>NC_011729.1|WP_157867439.1|3638570_3640025_-|hypothetical-protein
MGQLDSLFKGLGNYITVTFWLMKFMDLFNPIVPEERQHPHFRFMIQPDFCKPEIEVIKSWADGFIDRDHKFVKEFQTTFNSSFWELYLCACFKELGCTVDFSYETPDFVISSPYGDFIAEATTANEPDGFRPEWDKNVELLDQTSTEDILRLSTIRLSNAISKKYNKYINKYSKLSHVQNQPFVICVSPFDQPFFYFQDSLAIVRVLYAYEASLTVPGTEEGEFIFIGESRSFSVQKSPGVNIKLGLFTDDRMAEVSAIIFNNRATISKVRALAKEGSYPVIFMGSRIVQSGDMTGCQRFVAPRPNYQETILDGLHILINPLAKHPLDLKMFENREVAIHNYEPQTDRYFSEFPDGFLLQRICHAIVSKENTINFKRSLCEQPYQELPPETWAEDDLIYVGGHNGRFYKNHMAHYRGWTIVVFFDSISEEWNALTVKKLCYNIPQFMQANQDNSIASTDISEWFTTKEEAYAAIKQEIDNISQD
>NC_011729.1|WP_015955244.1|3635825_3638024_+|hypothetical-protein
MTISTAIPEFCQGIKHFGQQLPDFEKYGKQAAIKEGQNAIASSNDPIAVYQTLLAADALRYLTLQTTATKESGHPGGFASIAEAIAALVMLGHKNIITEVGHHAPGFYSTMFLDRSLEDMGIKTVQQLGERFREMHGLLGHLSGQIPGLLNPAGPLGQGQHFAMAGAKLHRDFLFPVTIGDGGIGEPYVMSSFSHFHTAYPDVTNFLPILVWNGYSQEHHSMVSTKPNEEMIKYWQGNGFQEVILVNAKDFDDANQPGDYVDSTKFSFAKRLEFTQAVLEATDKAAKSAFSGKLTVLIVKQLKGAGVHKRGAQSHNLYPGDSLEKDYIVNALQERALSPEAWELVRTNFERSAGGPASHHVVTEKELPLPELGQLPLSEYPVKGDKKVATTAMGELVVHVGKKDPNFVITNADGNAASGINNINIGLKIIHPTVDDIYYQGPKGQVYEPLSEDACAGLAVGLALFGARTLWCSYESFAINGLPIWQTVTQAMAELRRPTPSTITLFTAGALEQGRNGWTHQRPEIENYFAAMMRNGNVFPLFPCDANSIQVCYEWALGTKNKGITITASKSALPVRTSFEQTRQGLQDGGVVLHETEGKKQVVFAVIGDMTLIPVFDAAQHLEDQGIGVRIVSVINPRRLYRPDDVMWHTCTEADSHFLDDEGFERLFGGDALIGVTGGTSAMLEPVMLRSTSKRDVFAWKRGETAASAGEIMAFNGLTAEALTKRALSLVG
>NC_011729.1|WP_015955243.1|3635201_3635414_-|hypothetical-protein
MINYFTCLGFVAICSMLFWGSDSAFALADSTVLSSQFSLNNHQTNPEKNQLLSDFKGVCDVRASDPNCRE
>NC_011729.1|WP_015955242.1|3634836_3635070_-|hypothetical-protein
MTPKLVRYYLKVSSLVLLFLMGFVGVMGMIDVLKLSPNDMTGKPETPNFSPSIKKHCKVQPQLPLCVKLGSLSMDNG
>NC_011729.1|WP_015955241.1|3631827_3634671_-|TIR-domain-containing-protein
MTDVFISYSRKDQEFVKILHQALSQSHRDSWIDWQNIPKGTQWWQEIESGIEGANTFIFVISPDSIKSEVCGLEINHAINNGKRLLPIIRREVSEFDDNNTAHQALKDHNWLFFREEDDFQTSFEELIKTLDTDLNYVHQHTRLLVRAKEWDKKGRRDSFLLRGEELKEAEQWLEEAQIRFQNYQQQFKGKRQDPNPLLTEQHLHYIRKSREIEDAEHQAKRILLEAKTKADRLIKIGSGISIGLLTLSVLLAFKVQLQLQATNIKVDVIESQQLWKEGKIVEALEEALQAAKQLNPILNLSPHLKDQAEKQTKIALQQTVYDTIKERTRFKEHQDYIWGVSFSRDGKLLASGSTDKTIKLWDVTKGKLLYTLTGHTDGISSVSFSPDGKALVSGSDDNTIILWDVMTGKKLKTLKGHQDSVFSVSFSPDGKTVASGSRDNTIILWDVMTGKKLKTLKGHQNWVWSVSFSPDGKTLASGSVDKTIILWDIARGKSLKTLRGHEDKIFSVSFSPDGKTLASASADNTIKLWDIASENRVITLKGHQNWVMSVSFSPDGKTLASGSNDNTIKLWDVVTGNEIKTFSGHQHLVWSVKISPDGKTLASSSWDKNIILWDMTTNKEIKTFSKHQDLVSSVSISPAGKILASGSNDKSIILWDITTGKQLNTLKGHQKAIYSLSFNKDGKILASGSDDHRIILWNVTTGKPLKILKGHQEAVYSISLSPDGKILASGTNKNIILWDVTTGKPIKSFKENKEIIYSISLSPDGKILASGTNKNIILWDVTTGKKLGTLEGHQELVFSLSWSEDRKILASGSYDNTLKLWDIATRKELKTLKGHQSVINSVSFSPDGKTVASGSADKTVKLWDIDTGKPLKTFWGHQDLVNSVSFSPDGKTVVSGSADKTVKLWQFEGNFDLNHLIIKGCKSINTYLNSNPTKNELREFCQLSFQ
>NC_011729.1|WP_015955240.1|3630863_3631637_-|hypothetical-protein
MKILLTILLIIFFLIAYPIPTQAETLTPPLNQYTQWTYKPTLKKAKEDLIYPEWMEGKWQVTSILKEQLAPFAPEIVTPGFENSRQYLNQPVEFEVSFEKNHRLRHYNSFFPIAINKQLSIIADRQFNGLNIAKAYLGEKGVLSVKVDPDNPNRQITSLPENRQLISTITKRGSKTPTTDQFITTEVTQQFFRTEISVYLNEVETTTAYQLLDSGDINAQQITAIYLSPKDPNYFKATGSPVALYRYQLQLHSQKRI
>NC_011729.1|WP_015955239.1|3628976_3630782_-|aspartate-kinase
MALIVQKYGGTSVGSVDRIQAVAGRVKKTVDGGNTVVVVVSAMGKTTDGLVNLAKEISSNPSRREMDMLLSTGEQVSIALMSMALQELGQAAISMTGAQVGIVTEAEHSRARILEIKPDRIQSHLNGGKVVVVAGFQGISNSDELEITTLGRGGSDTSAVALAAALKADSCEIYTDVPGILTTDPRLVPEAQLMDEITCDEMLELASLGAKVLHPRAVEIARNYGVPLVVRSSWSEQPGTKVTSPVPKPRSLVGLELTKAVDGVEFDSDQAKVALLRVPDRPGIAARLFGEIAHQQVDVDLIIQSVHEGNTNDIAFTVIGGVLTKAEAVAEAIAPALRTHPTHTEEAEVLVEKRIAKIAIAGAGMIGRPGIAAKMFTTLAEAGVNIEMISTSEVKVSCVIDQKDTDKAIEALCEAFEVSSSPVETEKSSPESAPPVRGVALDRNQARIAIRHIPDRPGMAAKIFSVLAEKNISVDMIIQSQRCRIVEGVPRRDIAFTVAVGDALIAKKVLDDVSMAIGAGEVTVDSDIAKVSIVGAGMVGQPGVAARFFAALAQEKVNIQMIATSEIKISCVVAKNEGERALKAVHAAFELGGKDRVEVPA
>NC_011729.1|WP_015955250.1|3646093_3646996_-|lipid-kinase
MTKRALLMVNRHARKGQKSLAMAVDILNDLDFELITVPIKNPQQLAESVRKHGSRVDLVIVGGGDGTLNAVVDSLVEQQLPLGILPLGTANDLARTLAIPLSIPQACKVIAAGHQKSIDLGWVNGKYFFNVASVGLSVNITQKLTRGAKRRWGILAYGFTALQVLSQSHALRAEIRLNNESIAVKTVQIAIGNGSYYGGGMKVAEGATIDDQWLDLYSLELKSWWQIFPLLWRFPQGQHGLLPWVRTLKSREIELYTDKPYDINTDGELTACTPATFRVIPHALSVFVPEFKQEVNLEYN
>NC_011729.1|WP_015955251.1|3647047_3648757_-|CHAT-domain-containing-protein
MYNKATPCLSLAIARLNQAGPDNFAIWVIRSPLPGGYVHYDCIWPESLTRQWLTWQEMFSLQYEPHIPSFHRSADLLNQPALTFSTTEEGGYGGQLMQQLGISLWQWMFDGPIRQSLAQSRGVAFGKNQSLRVRLEIRDPNLVPLPWEIMQPEIGTQAISLSPQILFSRTTANVEPLQPQANRDSLHILLVVGEDINPPTLAPGIGLSSSYLSTQPDQTLSNTSYSLELQEEASALIQVIAQSNQVNGVNPPPSCASVKVDPLIQPTAIQLTEALDGGNYNVLFYAGHGMPGPDGGLLFLRSNAVMNGTELAQVLVRNRVTLALFNACWGAQPAQEGQRTIERSSLAEVLIHHGVPAVLGMRDAIADQEALSFIQAFTKALTQRMPIDQAVRIARQQLLTVYKFNQPAWTLPILYMHPEFDGKLLIKIDEGITELPVTQLDVSRETFPVAYLRLLSKKERISQIYGGLMRVGRHQENDLVIKERWVSQRHGEIICREQTSNAGNQYTYYLRDFSRFGTFIYDANNWQRVHHQEIPLTSGVRLKFGSLDGQIFEFIIENFNYSPVSPEDD
>NC_011729.1|WP_015955252.1|3648851_3650168_-|helix-turn-helix-transcriptional-regulator
MIPQPFLNTIATKHHLSKAELEVLSLAMEGESIGAIADLLKISEDAVRKRLSEVYHKFQIVGRGPVKLPQLQRQLMKQYQEQLKAQGDLALNISLGTSYHLTQPQINNSMDWDGAPDVSVFYGRATELALLKDWIVNQGCRLVSLLGIGGVGKTVLGVRLAHQIQEHFESLIWRSLYFAPSLQEFLDQLIKVLSLNKETPNLNTVDQQISWLVSYFRSYRCLVIVDGFESILSRGKLAGTYREGYDNYGKFLKRIGEEPSKSCVIITSREKINEISYLQGETSRVKSLKVEGLGEDARFLLKEKGLSAEENWQQLIEDYRGNPLMLKLVAATIQEVFDGNVKDFLETTFFTHDVTGFVRELLDQLSELEAKIIVQMANEKEPIILQQLRENLSGVSSQDVISAVASLRQRALVEKSRDGFTLPPVIRATLGNGYHLPN
>NC_011729.1|WP_015955253.1|3650623_3651904_+|glycosyltransferase-family-1-protein
MSFNKRIAFISVHGDPAIDIGKEEAGGQNVYVRQVGEALAKQGWQVDMFTRKADATQPAIVEHSPNCRTIRLVAGPETFIPRDKLFSYLPEFVEQLRSFQRDNNIQYSLVHTNYWLSAWVGMELKKYQPIQQIHTYHSLGAVKYQSVSDIPPIATTRLEVEKACLETAARIVATSPQEQDHMRQLMSQKGNIDIIPCGTDIERFGAVSSSEARLKLGIPRSSLVVLYVGRFDQRKGIETLVRAMGHSIFPGLADIRLIIVGGSRPGQSDGIERERIEAIVDELGLRDYTTFPGQIDHETLPYYYAAANLCVVPSHYEPFGLVAIEAMAAGTPVVASGVGGLQFTVVHEKTGLLCPPKDDKAFAQAIDSILSKPTWQAKLGKSARKRVETLFSWDGVAQQLSNLYLSLVDVPTAKPTVNISLKQVSA
>NC_011729.1|WP_015955254.1|3652087_3653623_-|anthranilate-synthase-component-I
MAQIGNHFSQPDTTFNPSIPANVASADDPLTLISSTVQPIQPWYWRKLPLCDRSGSQVFKTLFLQTTSKQIPVATLLESPGNSTHLARYSLCAGSPRIYKGQFQLWTPPIGNSLGFLRRLLALAPSQSTLLNSMLPPELPFTGGWLGWLGYDVAWEIEQLPQYNSDPLPFPIAYWYEPECFAILDHQQQILWLAASDDSQLDRMESQLEDSQRENYNPLNTLSTTPITPIFQMTKQEYITLVQQAKKYIQAGDIFQTNLSLRFETHTPCDSWSIYQALQQINPSPFASYWQTPWGAMISCSPERLIQRSGQKVQTRPIAGTRCRGMNLDHDQQLEAELIANLKERAEHIMLVDLERNDLGRVCQWGSVKVDEFLTIERYSHVMHLVSNIVGTLHPNFDSIDLIRGVFPGGTITGCPKVRCMEIIEELEPVKRNLFYGSCGYLDWRGNLDLNILIRTLLYSKTGDLSSGAKVWGQVGAGIVADSDPEKEWYESLHKAQAQLDALRLAQKLNS
>NC_011729.1|WP_041238282.1|3654108_3654444_+|hypothetical-protein
MNQSRGNLQINWGLITKVILEGKQRQELGELPFTYYYQKSGSLIGSFFCGDEEGEFILFFNLNYPDSAVILQLIAQHCQVLKEEILVYPLDSQGIELYSTVTPEKYIILDL
>NC_011729.1|WP_157867441.1|3655342_3655534_+|hypothetical-protein
MLCSYSPTLQGSGKAIAIEKILPQLNRYKPDWWAMPTLQKERRLGGKSKSPIAIATKTLIAVK
>NC_011729.1|WP_015955256.1|3655625_3655814_+|photosystem-II-reaction-center-protein-PsbZ
MSIVFQIALAALVFFSFVMVIGVPFAYAAPQYWDQSKPLLWVGSGIWTILVIVVAVLNFFVI
>NC_011729.1|WP_015955257.1|3655910_3656513_+|6,7-dimethyl-8-ribityllumazine-synthase
MAVFEGNFTFNPQQLRFAIVIGRFNDLVTGKLLSGCQDCLKRHGIDVDPNGNQVDYAWVPGSFELPLVARQLAISGRYDAIICLGAIIRGQTPHFDYVASETAKGIAAIGFQTGIPVIFGVLTTDTMQQALERAGIKSNLGWQYGQDALEMAALMGQLRGLTPDYSQSDNKIVPALPVSSPGQLNPTAIPQQQSDPKNQS
>NC_011729.1|WP_015955258.1|3656819_3657227_+|hypothetical-protein
MRPNKAIKIDLNNDYPCPCRRRGRLMPIILTEAFGCDRCQKIFVLQDNNQVIEQLSSTYPYKQMWRWTGFRWVTVHPRIGETYLSVMVGIILLMLFVVLPLVLHSPASVSMIFWIGIAVLVLILPVILFWLARGR

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Crispr_ID: NC_011729_30

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_30

3678371-3678478

Orphan

N:A

Consensus_repeat	Method
GTTTATTTATGCCCACCTACTTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_30

>merge|NC_011729|30|3678371-3678478|CRISPRCasFinder
GTTTATTTATGCCCACCTACTTAGTTGCTCTAGCCCTCTTCGGTCAAGGATTAGCACAACTTTTAATTGTTTTTTTATTGTTTGTTTATTTATGCCCATCTACTTAGT

>NC_011729|30|28|3678371-3678478|CRISPRCasFinder
GTTTATTTATGCCCACCTACTTAGT	TGCTCTAGCCCTCTTCGGTCAAGGATTAGCACAACTTTTAATTGTTTTTTTATTGTTT
GTTTATTTATGCCCATCTACTTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955281.1\|3682167_3682938_-\|pilus-biosynthesis-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955282.1\|3682934_3683720_-\|fimbrial-assembly-protein	unknown	unknown	gnl\|CDD\|225707
NC_011729.1\|WP_015955269.1\|3669552_3670455_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955283.1\|3683722_3684829_-\|type-IV-pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
NC_011729.1\|WP_015955279.1\|3678736_3679795_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955284.1\|3685349_3686636_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_011729.1\|WP_015955270.1\|3670600_3671587_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|163279
NC_011729.1\|WP_015955288.1\|3689421_3690402_-\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|153110
NC_011729.1\|WP_041238284.1\|3677062_3678205_+\|GRRM-system-radical-SAM/SPASM-domain-protein	unknown	unknown	gnl\|CDD\|211984
NC_011729.1\|WP_015955275.1\|3675912_3676314_+\|rSAM-associated-Gly-rich-repeat-protein	unknown	unknown	gnl\|CDD\|275087
NC_011729.1\|WP_015955273.1\|3673641_3674826_-\|TRC40/GET3/ArsA-family-transport-energizing-ATPase	unknown	unknown	gnl\|CDD\|367057
NC_011729.1\|WP_049858557.1\|3679853_3682022_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|333965
NC_011729.1\|WP_041237773.1\|3674885_3675776_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|275088
NC_011729.1\|WP_015955272.1\|3672984_3673578_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NC_011729.1\|WP_015955289.1\|3691090_3691618_-\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|197366
NC_011729.1\|WP_015955276.1\|3676568_3676949_+\|rSAM-associated-Gly-rich-repeat-protein	unknown	unknown	gnl\|CDD\|275087
NC_011729.1\|WP_015955268.1\|3667626_3669549_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|223520
NC_011729.1\|WP_015955286.1\|3688183_3689074_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|184875
NC_011729.1\|WP_015955285.1\|3686904_3688176_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377544
NC_011729.1\|WP_015955271.1\|3671650_3672484_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_041238284.1\|3677062_3678205_+\|GRRM-system-radical-SAM/SPASM-domain-protein	gnl\|CDD\|211984	TIGR04261, putative_arylsulfatase_regulatory_protein, radical SAM/SPASM domain protein, GRRM system. Members of this protein family are radical SAM/SPASM domain proteins (see pfam04055 and TIGR04085) related to anaeroboic sulfatase maturating enzymes and the peptide modification enzyme PqqE. Members are found primarily in Cyanobacteria adjacent to a short protein, ~150 residues, in which the last ~60 residues tends to be repetitive and highly glycine-rich (see TIGR04260). The arrangement suggests modifications to the repetitive C-terminal region by this radical SAM domain enzyme, but the purpose of this system on the whole is unknown.	0
NC_011729.1\|WP_015955268.1\|3667626_3669549_-\|Hsp70-family-protein	gnl\|CDD\|223520	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones].	7.70619e-37
NC_011729.1\|WP_015955283.1\|3683722_3684829_-\|type-IV-pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	5.19353e-132
NC_011729.1\|WP_015955284.1\|3685349_3686636_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.79082e-61
NC_011729.1\|WP_015955270.1\|3670600_3671587_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|163279	TIGR03466, HpnA, hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.	0
NC_011729.1\|WP_015955282.1\|3682934_3683720_-\|fimbrial-assembly-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	7.65487e-18
NC_011729.1\|WP_015955275.1\|3675912_3676314_+\|rSAM-associated-Gly-rich-repeat-protein	gnl\|CDD\|275087	TIGR04260, hypothetical_protein, rSAM-associated Gly-rich repeat protein. Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems.	2.00602e-27
NC_011729.1\|WP_015955273.1\|3673641_3674826_-\|TRC40/GET3/ArsA-family-transport-energizing-ATPase	gnl\|CDD\|367057	pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.	2.67792e-133
NC_011729.1\|WP_049858557.1\|3679853_3682022_-\|pilus-assembly-protein	gnl\|CDD\|333965	pfam00263, Secretin, Bacterial type II and III secretion system protein.	1.12579e-38
NC_011729.1\|WP_041237773.1\|3674885_3675776_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|275088	TIGR04262, possible_ABC_transporter_solute_binding_protein, extracellular substrate-binding orphan protein, GRRM family. This subfamily belongs to bacterial extracellular solute-binding protein family 3 (pfam00497). In that family, most members are ABC transporter periplasmic substrate-binding proteins. However, members of the present subfamily are orphans in the sense of being adjacent to neither ABC transporter ATP-binding proteins or permease subunits. Instead, most members are encoded next to the two signature proteins of the proposed Glycine-Rich Repeat Modification (GRRM) system, a radical SAM/SPASM protein GrrM (TIGR04261) and the Gly-rich repeat protein itself GrrA (TIGR04260).	9.54722e-89
NC_011729.1\|WP_015955272.1\|3672984_3673578_+\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.46845e-10
NC_011729.1\|WP_015955289.1\|3691090_3691618_-\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|197366	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins. This family summarizes bacterial proteins related to CpxP, a periplasmic protein that forms part of a two-component system which acts as a global modulator of cell-envelope stress in gram-negative bacteria. CpxP aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Functioning as a dimer, it inhibits activation of the kinase CpxA, but also plays a vital role in the quality control system of P pili. It has been suggested that CpxP directly interacts with CpxA via its concave polar surface. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy suggests similar functions. A characteristic 5-residue sequence motif LTXXQ is found repeated twice in many members of this family.	1.77383e-18
NC_011729.1\|WP_015955276.1\|3676568_3676949_+\|rSAM-associated-Gly-rich-repeat-protein	gnl\|CDD\|275087	TIGR04260, hypothetical_protein, rSAM-associated Gly-rich repeat protein. Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems.	1.56234e-26
NC_011729.1\|WP_015955288.1\|3689421_3690402_-\|manganese-catalase-family-protein	gnl\|CDD\|153110	cd01051, Mn_catalase, Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenzymes are homohexameric structures; each subunit contains a dimanganese active site. The manganese ions are linked by a mu 1,3-bridging glutamate carboxylate and two mu-bridging solvent oxygens that electronically couple the metal centers. Several members of this CD lack the C-terminal strands that pack against the neighboring catalytic domains as seen in L. plantarum. One such sequence, Bacillus subtilis CotJC, is known to be a component of the inner spore coat that interacts with spore coat protein, CotJA. It has been suggested that CotJC could modulate the degree of Mn SodA-dependent cross-linking of an outer coat component, or the two enzymes could serve to protect specific cellular structures during the developmental process.	3.46955e-84
NC_011729.1\|WP_015955286.1\|3688183_3689074_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	3.40734e-47
NC_011729.1\|WP_015955285.1\|3686904_3688176_+\|ATP-binding-protein	gnl\|CDD\|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	2.06581e-141
NC_011729.1\|WP_015955271.1\|3671650_3672484_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.43684e-63

>NC_011729.1|WP_041238284.1|3677062_3678205_+|GRRM-system-radical-SAM/SPASM-domain-protein
MDVSQFGAINLVVIQPTSFCNLDCDYCYLPHRHLKNQLSLDLIEPILKTVLTSPFVDDHFTICWHAGEPLAVPISFYRSAFNLIDQAQKKYDTQSCKIFQSVQTNGTLINQAWCDLFKEYQVLVGVSLDGPSFIHDAHRKNRQGRGSHANTMRGISFLQKNEIPIQIISVITEDSLDYPDEIFNFFMEHDLTDVGFNLEETEGVHQCSSLDKAEIPGRYRAFMQRIWDLTAQSQGKFKLREFESICSLIYNDERLNNTDMNAPFVIVSFDYLGNFSTFDPELLSVKTTHYGDFILGNVFQDSLLSVCYTEKFQKIYQDMKAGVELCQETCQYFGVCGGGAGSNKYWENGTFCSTQTKACQYRTQIITDIVLQELEKIYQI
>NC_011729.1|WP_015955276.1|3676568_3676949_+|rSAM-associated-Gly-rich-repeat-protein
MNITSTTGLVGFLLALSALNLPQAEAKAYSTDSNLTQMTIEQRLAKISAIIKEQEDHLLESTNPDIDSQIAGAWGNGRGRGWADGRSGSGWADGRSGGGWVNGRNGGGWVNGRNWSDGGGFWNRRY
>NC_011729.1|WP_015955275.1|3675912_3676314_+|rSAM-associated-Gly-rich-repeat-protein
MNITTTTGLVGFLLALSALNLPQAEAKAYSTDSNPAQSTIEQRLAKISALIKEQEDHLLESTDLDIDPQIAGAWGNGRGRGWVDGRDRRGWADGRGDRGWVNGSRGGWGNGRDGAWVNGRRWSDGGGFWNRRF
>NC_011729.1|WP_041237773.1|3674885_3675776_-|transporter-substrate-binding-domain-containing-protein
MMKKLTLALLSLAFTLALPLKSGAETVLERVARTGVLTVGTPTDIVPLAYVNEQQELVGYSVDFLNLLKDQIQTQLGREIALQFVEITPSDGIPKLMSEEVDIICNAGFSWERDKFVDFSLSMGISGTQILVKQNTNLGSIDSLKGKRVAAIPKTIAEQVIRVSQPDATVVTVESMQQGFEAVEQGKVDAFAADGIILEGYQQTVSQPNAYKVVPEQPYNRQGIACMVPENNSKFLDTINFTIVRLMQGYLAQEPSSVEIIERWFGSQGIITVEPELIRNYFQDVINSREQIFIQQ
>NC_011729.1|WP_015955273.1|3673641_3674826_-|TRC40/GET3/ArsA-family-transport-energizing-ATPase
MRVILMTGKGGVGKTSVAAATGLRCAELGYKTLVLSTDPAHSLADSFDLELGHEPRQVRPNLWGAELDALMELEGNWGAVKRYITQVLQARGLEGVQAEELAILPGMDEIFGLVRMKRHYDEGTYDVLIIDSAPTGTALRLLSIPEVGGWYMRRFYKPLQGMSIALRPLFEPIFKPITGFSLPDKEVMDAPYEFYQQIEALEKVLTDNTQTSVRLVTNPEKMVIKESLRAHAYLSLYNVSTDLIVANRIIPEKVTDPFFTRWKENQQIYKQEIYDNFHPLPIKEVPLYSEELCGLEALERLKNTLYADEDPAQVYYQENTVRVVQDKNNYSLELYLPGIPKEQVQLNKTGDELNIRIGNHRRNLVLPQALAALNPSGAKMEEDYLKIRFSGAGV
>NC_011729.1|WP_015955272.1|3672984_3673578_+|hypothetical-protein
MYEYRKLSPQQQAEIVQQRLAKGYPPHSPPHPIKNQEYYLLTASCYEHKNRLNSSQRRQELLNLLFENLTIHNLEIIAWIILPNHYHLLAKNIKFICLSQQLRLIHGRLARQWNLEDNLSGKVWHSFSDRAIRSERHYYTTLNYIHYNPVKHSWVKSPYDWKESSVHWYFQDKGREWLRNCWVEYPVKDYGKGWDEN
>NC_011729.1|WP_015955271.1|3671650_3672484_+|metallophosphoesterase
MVNWILTEPLKVERLTVAIADLPLSLVGLKLVLLSDFHYDGQRLSEELLAEVITTSNQENPDLILLTGDYITYAPEPINDLIVRLKYLKSRYGIYACLGNHDIYHPQAKQQVIEAFSRIGIRVLWNAIATPLGADLPIIGLAEYWSNQFNPASVMNRVDPSIPRLVLCHNPDTAVILKQWRVDLQLSGHTHGGQIVIPGIGSAPILLQYFRQITPTCLQRFIPYLRPCSRIVKNWQWSEGLHQVGRNQLYVNRGLGTYFPGRFFCPPELTVIRLDRR
>NC_011729.1|WP_015955270.1|3670600_3671587_-|NAD-dependent-epimerase/dehydratase-family-protein
MTIKAFVTGATGFIGANLVRLLLEQGYGVKALIRPNSRLDNLQGLNIELVQGNFNDPDLFKLMQGCTVLFHVAAHYSLWQKDKEKLYQSNVLGTRQVLRAAHQAGIQRTVYTSSVAAIGVGKPGDIVDETHQSPVEKLIGYYKKSKYYAEQEAIKACQMGQDIVIVNPSTPIGPLDIKPTPTGEIILRFLRRQMPAYVDTGLNLIDVRDVAWGHLLAYQKGKTGERYILGHQNLSLKELLEKLAQITDLKAPKTTVPHWLPLTVAWVEEQILAPLGKPPSVPLDGVRMSVQPMYYDPSKAVRELGLPQSSIDIALKDAVEWFTTHEYI
>NC_011729.1|WP_015955269.1|3669552_3670455_-|hypothetical-protein
MKTLLALVNEQRSQLQEEIDKAKSIEEVITLLQNRLDNLERNYTGQLNISQVRLVSFFLDALRQSIASLAATQLSQKLLNQSQPVVNSTFKLPSNELILKGLQGLICIGIISSLLSLNKIPAGAWMAILLTVVLVGIETVLLLDKFNRPVDEKTEPNQVLEVPKPVLEINSQILLDHLADALNTIDHAVISVQGTKLENNSGLEELPELLNFLQRLMGANFLERPQMSLELIKLLPQILRQQGIYAQIYHPNDPQSERSHFDFEPSIDHSTQEYITLSPALLKGDRLLRRGRVIEPVSQQ
>NC_011729.1|WP_015955268.1|3667626_3669549_-|Hsp70-family-protein
MEILEIIGFDLGHGETAIAKAIVDSIEPPQMLEINNQKHQITALGRHPRLGYLVGEQALIQAGVTELKIGFKQKPSHDLEYRETIRLFVATNYRILQETRQIDNDHNSYFYVGCPSGWSVQDRENYQKLLQEAGISQLRVIPESRAAFMQAKEAGKLEYEKLKSSVLIIDIGSSTTDFTLVNSLQEVPIDFGSNTLGASLIDRAIFARTLAQHEQKELLEKVFQEYPHHQARCELACRKAKEDYFTHEQLYSDPQSVARGFESINDQIYFIPQVNQLIMEEILNQPLKELGGKSWLKAFREAVKEAKSKLKEKQILPTLVLMTGGASRMNFTRLICEEVFYEDTSQIRPEPEPERSIALGLARVGRWDLRATAFRQEVQQLIDSKQLYQLIEKQIPELIKLLSEPLAKGLLENAITPGLKDWRNNKIKTLADLETSLKNRAQIWLKSEQASKIINQQSINWFNEKIQPELATQTDPICRKFHIPRSSLRLEEGIDPALTNPDLRIGDVLLADTVALFINVIIGGGTLASLITLVLTGHFAWPIVLIYGASMMAAGMELNRKGVKEAIKTNIDIPSWMRPNFLNDKKLEQLNQQTLPELEKTLREQLSANQEVFAQLIEKVEQDLEKILFTKVQEAIILIH
>NC_011729.1|WP_015955279.1|3678736_3679795_+|hypothetical-protein
MTKIKFLLLTFLITCAICLPNYFMLETVGAANEPCSYHEQAYQDLDLTNLSQELEGTGLMGSIHGAYASSRLFVLSVREPDNFFNHREFSLIPSDETSLKGLNGVKRQDEVCIKGRFIPNPSEQKHILVQSVTLVKPWQHQDNFDPYQREVSLPEDLINQSSFVGKVHAVYADGQVLVVEYKDGVIPVFVQSPQLTKDLFRGDIIRLSYQIQTLPTQPTHLRLNLEQSQPLEVLDSIVKWHEKDVSVRGKLVKFPQSPQIKFDVYAIAVDTEGITRYFTLVNFQDASTFQNIRDKLAGIWETHLSTAKSGRNMLINPEVTIEVQGVGNVVSPAQANPQILLSSEKNIQVIDN
>NC_011729.1|WP_049858557.1|3679853_3682022_-|pilus-assembly-protein
MASLFLSIQPSLLASAESFDSRQEKNSSQQQNPFDSPQSSVESLSLSSDEFFSPEISSKPFSIESIGQDIDKSSSIEESSLNFPILESDKIKDQELITQSTPMISQPEIIIEENNQMLEPSVPAYPVVPRAVAPPVGDMAVSNIDAMADTINLGTAAIIPRLVLREAPAREVLAVLARYAGFNLIFTDTQTAAPEGQGGAVGSQQTVSLDLENESVEEVFNSVLMISGLKANRRGRTIFVGAALPAAARNLITRTIRLNQIEAINAATFLATQGAEYQRLVTQTEDIVDPLTNRVVGRRDTPPELQPLVVNRQEGSNAPFLLDGLTIATDERLNSITLIGEPRQVQIATSMLVQLDARRRQVAVNVKVVDVQLAGTEFYNSSFSFGFDDGFFVQDGGTAILNFGNYNPPNAAQTRSSVPTPPVIPTTDAFGGGVVPNVFIDIQGSAPFNTVNQGLEQFADTLVPYARPGFGTLNNPFQPGVTEIDISRDEDGFIEEIEYTYELPNVFQFPEKFLLTLEAQITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQDAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGASQEFESGDGTTNQLTLLTRRELTSGLIRMRDGQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIIDDRPDSSWGFNYTPGPGAAEMLRRQGFPVQPR
>NC_011729.1|WP_015955281.1|3682167_3682938_-|pilus-biosynthesis-protein
MTFSEDYSTQQGASLEESGKYPVAFGITFTPKVSGIALGALGAFGAVYILMNMVMPAYTTYQEQKAEEASLLEQVEQQKTGEFEKKLQKAEAELQQKQALRKEILAFFGSEKSLDTLLLDINKFFKSRNVALLKFTPDGEATVIDDSSLGQGVNQKLKRQNINIEMEGGFVQTQAILKDLERLQPLILIQNLKTENNTQLLELKRNPLQLIPKDPTAKVSFVLQVILPVSFEDLPPPAAEKPESEKKDKAEKDPKS
>NC_011729.1|WP_015955282.1|3682934_3683720_-|fimbrial-assembly-protein
MYSIDINFLKDREVEVSQKTQTQPKGTAFDVQEQLPMLLGLGAMVLLIAFPLGLLLIVNWQTAQTKKNIDKLTEQVAELTAQNQRLAAIKKHIEAIDENTQSLVTVFNQVKPASALLQEISNVIPQSVHIGTIEQVELEPETGKSENPAKKATQLKINGYAKTFDDVNKFVLTLQRSPFFKADATKIEKAELADLPIEVENKENLTENNLIITFPKGIQYTIVTQLNDLPAAQLLPDLQRNGANGLVTRITTLREKGVLKP
>NC_011729.1|WP_015955283.1|3683722_3684829_-|type-IV-pilus-assembly-protein-PilM
MLTFFKNLLPNKSQGFGMEITPERVNLAQITKQGQNYRLAKFCTVDLPEGIFQEGKIVDSPALSEIIQEMLTEYKIKEKRVATGVPMREAIIRIIPIPAQLDEQEMRDMVLNHEASLYLPYPREEVDLDYMKLGYFEDEDGIEKVQVLLVATRREVTNSYLDTLQQVGLQVDVIEINSFALIRTIREQLRQFSSNEAAVLVDIQFDNTEIAIVVNGVPQFSRTVPIGTYQLQNALSRAMNLPSSRSPDILQGMTIPVTAFDSLSTTGAAINPGMTALMRVLGELTDELRRSINFYLNQSEELEIVQLLLAGPGGGLAQLDEFFTQRLSIPTMQIDPIAALSLTVDQEIASVQRPGLGTVLGLGLREVV
>NC_011729.1|WP_015955284.1|3685349_3686636_+|serine/threonine-protein-kinase
MFQSQEILTNRYQLQQQLGRTAAGHQTWLALDLTSNEQVTIKLLAFSPQMEWHELKLFEREAQILQSLHHPRIPRYRDYFDLDKTVGGGIPWFVLVQDYIPGASLQDLLEQGKRFSEKEIRSIATEVLEILIYLHQLSPLVLHRDIKPSNLILGKDNHIYLIDFGAVQAQASVTGVTFTVVGTSGYAPLEQFWGRAVPASDIYGLGATLIHLLTGISPIDLPHQNSQIQFAHKVSIKPDLLSWIEQSTQIPVEKRFSSAREALDALQSGHLLRENRSRFSSHNKLIQPLKSRINLIRKMEAIDIFFPSLFNQSINSFQLGIGLSVLIFLYVVFFPLAIFLSIIIILGFKNVHVHFTQKYFKIYYKIFDFTYSVKEETNYQLIGVFLHSGKRNYQVRLRTKQGSYIIGENLQEEECAWLGQEIQDWLYH
>NC_011729.1|WP_015955285.1|3686904_3688176_+|ATP-binding-protein
MLESLYYQISSLTLYQSVFNHEVGKAFLRLLQTLQQNNEPVSTKALVLKAYGQWVKTLASHNISWQDFIIEQILGNDNPFSRQVQKQSLQDLPLSLIEAVKYDLTVLKTVYNCQPEQIKQWVQAFTHVDFELITWDLNPSDQNFFNQSENWLNSLEDLVQYYRKQGTGIIAQYKAFRWQTGKLIGIAHPDPIKLHEIIGYEFQKESLVKNTEFLLAEYPALHVLLYGSRGSGKSSLVKALLHQYYNQGLRLIEVGKSDLKDLGMIVEKLRDLPQKFIIFVDDLSFEEDDEAFKALKVVLEGSLTAKASNVVVYATSNRRHLIREFFGDRPRPSDGDEIHSWDTVQEKLSFSDRFGLTLTFEPANQETYLEIVRGLAQQADLSLEGEEIEYLAKQWATRHNGRSGRTARQFIDYLQGELAFKNR
>NC_011729.1|WP_015955286.1|3688183_3689074_-|alpha/beta-fold-hydrolase
MERMIAQPCVTVAGSQMTLTTEYLTAGEGSPLLLLHGVGDSAYSWQWVIPALARTHRIYAPSLPGFGASDKPKIEYSPEFFTAFVKAFLDTLDIQQASVVGNSLGGLVSIRLALSSPSRVNALVLVDSAGLGRTLNVAMRGLTLPGTAKILGSFGRTSVGAKIWSWSFSALTLANPTRAKRDWLDRIYNMAKDPAYLEATVSALKNENTIAGQRDHEIMLDQLSKLNIPTLVIWGQNDRVLPVNHAHTAISRLPQGQLKILSDCGHIPQIEQPEAFEAALSSFLNEVVDKATTAPS
>NC_011729.1|WP_015955288.1|3689421_3690402_-|manganese-catalase-family-protein
MFHHVKELEFNARVSAPDPRFASLLLEQFGGANGELKAAMQYFVQAFAARKPFPDKYDLLMDIATEELSHLEIVGATITMLLDGVNGELKNAADNSMLFNLLSGSEKKEEMIHQAMTNPQFLALSGGSPTLTNSQGVPWTASYVNANGDLTVDLRSDIAAESRAKIVYEYLMQFTDDPYVKDTLGFLMTREVAHFKMFASALETIEPNFPPGVLQGDPRYTHIYMNMSNGASVRGPWNQGQGAWEAGENWEYVENPYQQVVETNGLVDQPIKGTTRTPQQAEEMSRKLGMQRSQEIEAVTKSGSTQWSTYPQGNVDSPMKPQEKQL
>NC_011729.1|WP_015955289.1|3691090_3691618_-|Spy/CpxP-family-protein-refolding-chaperone
MSIRQTSTMIVLLTLCIGGSLVLGQPLFKNNRQTLFNSQQLLAQNSQSPRRISQREKPEGGRILQELNLTEQQKQQLEAIKQQYEGQIQPLRDNLKIVYQDLGQMMAGTASVPEIRAKHQELVNLRQQMGDLRFEGMLAMREILTPEQRNKFAQLMEQHRDKFHHRSDDPSLPNE

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Crispr_ID: NC_011729_31

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_31

3750957-3751074

Orphan

N:A

Consensus_repeat	Method
TAAAAGTAGAACGTAGGTTGGGTTGAGGAACGAAACCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_31

>merge|NC_011729|31|3750957-3751074|CRISPRCasFinder
TAAAAGTAGAACGTAGGTTGGGTTGAGGAACGAAACCCAACAGATTACTCGATTTACTCTCATATTAAAGATTAAGTAAAAGTAGAACGTAGGTTGGGTTGAGGAACGAAACCCAACA

>NC_011729|31|29|3750957-3751074|CRISPRCasFinder
TAAAAGTAGAACGTAGGTTGGGTTGAGGAACGAAACCCAACA	GATTACTCGATTTACTCTCATATTAAAGATTAAG
TAAAAGTAGAACGTAGGTTGGGTTGAGGAACGAAACCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955340.1\|3742264_3743497_-\|methionine-gamma-lyase-family-protein	unknown	unknown	gnl\|CDD\|311036
NC_011729.1\|WP_015955351.1\|3752747_3753053_-\|DUF5132-domain-containing-protein	unknown	unknown	gnl\|CDD\|319213
NC_011729.1\|WP_015955354.1\|3756855_3759336_-\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_015955341.1\|3743741_3744560_+\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|224316
NC_011729.1\|WP_015955342.1\|3744831_3745575_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_011729.1\|WP_015955348.1\|3750421_3750766_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955346.1\|3748350_3748737_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955349.1\|3751325_3751937_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041238288.1\|3749355_3750312_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NC_011729.1\|WP_157867624.1\|3760478_3760961_-\|DUF2382-domain-containing-protein	unknown	unknown	gnl\|CDD\|378207
NC_011729.1\|WP_015955347.1\|3748838_3749267_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955343.1\|3745634_3746363_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180984
NC_011729.1\|WP_015955352.1\|3753070_3755338_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319848
NC_011729.1\|WP_015955357.1\|3761075_3761954_-\|DUF2382-domain-containing-protein	unknown	unknown	gnl\|CDD\|226379
NC_011729.1\|WP_015955359.1\|3763446_3765684_-\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765
NC_011729.1\|WP_015955345.1\|3747244_3748321_-\|phosphotransacetylase-family-protein	unknown	unknown	gnl\|CDD\|223926
NC_011729.1\|WP_015955350.1\|3752189_3752492_-\|DUF5132-domain-containing-protein	unknown	unknown	gnl\|CDD\|319213
NC_011729.1\|WP_015955355.1\|3759530_3760487_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955353.1\|3755398_3756613_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955344.1\|3746709_3747219_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015955340.1\|3742264_3743497_-\|methionine-gamma-lyase-family-protein	gnl\|CDD\|311036	pfam06838, Met_gamma_lyase, Methionine gamma-lyase. This is a putative pyridoxal 5'-phosphate-dependent methionine gamma-lyase enzyme involved in methionine catabolism.	0
NC_011729.1\|WP_015955351.1\|3752747_3753053_-\|DUF5132-domain-containing-protein	gnl\|CDD\|319213	pfam17195, DUF5132, Protein of unknown function (DUF5132). Proteins in this family are uncharacterized, but have been identified as members of a gene cluster for the synthesis of Ansamitocin.	1.21035e-08
NC_011729.1\|WP_015955354.1\|3756855_3759336_-\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.89875e-78
NC_011729.1\|WP_015955341.1\|3743741_3744560_+\|acyl-CoA-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	7.45053e-109
NC_011729.1\|WP_015955342.1\|3744831_3745575_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	4.80858e-126
NC_011729.1\|WP_157867624.1\|3760478_3760961_-\|DUF2382-domain-containing-protein	gnl\|CDD\|378207	pfam09557, DUF2382, Domain of unknown function (DUF2382). This entry describes an uncharacterized domain, sometimes found in association with a PRC-barrel domain pfam05239 which is also found in rRNA processing protein RimM and in a photosynthetic reaction centre complex protein). This domain is found in proteins from Bacillus subtilis, Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus xanthus, and several other species. The function is not known.	0.00204714
NC_011729.1\|WP_015955344.1\|3746709_3747219_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.18851e-46
NC_011729.1\|WP_041238288.1\|3749355_3750312_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NC_011729.1\|WP_015955357.1\|3761075_3761954_-\|DUF2382-domain-containing-protein	gnl\|CDD\|226379	COG3861, COG3861, Uncharacterized protein conserved in bacteria [Function unknown].	2.00392e-49
NC_011729.1\|WP_015955343.1\|3745634_3746363_-\|SDR-family-oxidoreductase	gnl\|CDD\|180984	PRK07454, PRK07454, SDR family oxidoreductase.	1.53979e-145
NC_011729.1\|WP_015955352.1\|3753070_3755338_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319848	cd07550, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily. Uncharacterized subfamily of the heavy metal-transporting ATPases (Type IB ATPases) which transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_011729.1\|WP_015955359.1\|3763446_3765684_-\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0
NC_011729.1\|WP_015955345.1\|3747244_3748321_-\|phosphotransacetylase-family-protein	gnl\|CDD\|223926	COG0857, Pta, BioD-like N-terminal domain of phosphotransacetylase [General function prediction only].	6.26529e-106
NC_011729.1\|WP_015955350.1\|3752189_3752492_-\|DUF5132-domain-containing-protein	gnl\|CDD\|319213	pfam17195, DUF5132, Protein of unknown function (DUF5132). Proteins in this family are uncharacterized, but have been identified as members of a gene cluster for the synthesis of Ansamitocin.	4.20925e-08

>NC_011729.1|WP_015955348.1|3750421_3750766_+|hypothetical-protein
MQNSIMLIIPYRYEGMWVFDDDKVGLVREPFVSGIPEMIDILVKDITNAEQGFRLLFAATPFPGYQIELNWLREEFGGHWYSWREQGLEGWLCPALFKYFSQAPLKLYCKAESK
>NC_011729.1|WP_041238288.1|3749355_3750312_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MMERTDRHFRYFMRQITRRTLLYTEMITTAAIIHGDRHKLLDFSPAEKPLSLQLGGDNPQELAECALIASDWGYDEINLNVGCPSDRVQNGNFGACLMAQPERVAMAVEAMQKAVNLPITVKHRIGIDDRDSYEDMANFVQIVSQSGCDRFTVHARKAWLNGLSPKENRTIPPLRYEDVYRLKEEFPHLFIEINGGITSLDQVDHHLHFVDGVMIGRAAYDNPYLFATVDRDIYGEEITPPTRQEVVEKMLPYIEEKVKEGVKLHSISRHLLQLFTGQPGTKAWKRYISENAHHEGAGADVIKNALARVEAVFQGVEL
>NC_011729.1|WP_015955347.1|3748838_3749267_-|hypothetical-protein
MLTGPDFLVTFLYYFSCTSLIIILVSWQGMGLSLTTPFPYQLGSLVGLIAGLLGAYYNRSLSTSIPFTHKKTFLQTLNKTLSEMGYQQQGQLEDCIVYQKSQRPFSGKLLVKIEDKSATIIGRSGILNILGQNYKNSTTQEK
>NC_011729.1|WP_015955346.1|3748350_3748737_-|hypothetical-protein
MLTIDKLDPASKGDVILYMPYYPKDKHSLLPYAITLYQGGYLEGQRQIEGSDNIPFVASWYVSKLPSELTRCRIQFEGQAELSYEMTVLNAEFIDYLIDVIKVFKQLGAGDFPQGFYRKLLRFEEQPA
>NC_011729.1|WP_015955345.1|3747244_3748321_-|phosphotransacetylase-family-protein
MAQSAKCLLIGSVEAYSGKSGTILGLAHQLQQQGRVVAYGKPLGTCLNFQETEMIDEDVEFVRQSLGLSSGQVRSPLIYLDETTIHKRLHREDTTDYTQAVTDYLQQLEGEIILIEGAGTLWEGSLFDLSLPKMASLLEADVLIVVRYTSPLVVESLLKVKRELGDRLMGVVINDLPPDQLETIQDLVNPYLENEGIPVLGMLPKSNLLRSVSVRQLAQQLKADVLCRSDRLDLMVEKLTIGAMNVNAALEFFRQGQNMAVVTGGDRTELQLAALETSTSCLILTGHIAPDPLILTRAEDLEIPILSVQLDTLTTVEIVDQAFGKVRLQEQIKVDCIQEMMKNYFDIDRLMQKLNGSM
>NC_011729.1|WP_015955344.1|3746709_3747219_-|N-acetyltransferase
MFSIRPENQDDAQGVRFLLEKTFNRPQEANLVETLRARDMISLSLVAHIDEQIVGYIAFSPVELESNESSLKILGLAPLAILPQYQRQALGSNLVEIGLQQCQALGYEAIVVLGEPTFYHRFGFRPTSLYSLWSSFDIPSEFFMIKELITGSLGGHSGVILYQPEFNLV
>NC_011729.1|WP_015955343.1|3745634_3746363_-|SDR-family-oxidoreductase
MSFNSSQRRAIITGASSGIGKATALAFAKAGIHVALVSRSQDKLEAVVNAAQAVGVEAKAYPIDLAKIEEVKEKIEEIIQDFGLINILVNNAGIGYTNSVSETSLSDWQEVINLNLTSVFQCVLGVLPSMREQSEGIIINIASIAANNPFPGWGAYCVSKSGLVAFSKVLAAEERANGIRVMTISPGAVNTPIWDTDTVQADLDRSVMLHPETVAQAILQAALLPKEAVIDEMTIMPSSGTL
>NC_011729.1|WP_015955342.1|3744831_3745575_-|GTP-cyclohydrolase-I-FolE
MTVAPSNGYNRSNSVNSSSLTPANSNGLNPDLVERVVSRPDRNTHNGQPAHIHTTTEENKEKMMQAVEMILESVGEDPGREGLLKTPKRVAEAMQFLTQGYNQSLEELVNDAIFDEGHNEMVLVRDIDFFSLCEHHMLPFMGKAHVAYIPNQKVVGLSKLARIVEMYARRLQVQERLTRQIAEAIQEILNPQGVAVVMEATHMCMVMRGVQKPGSWTVTSAMLGAFQDDQKTREEFLNLIRHRPNFM
>NC_011729.1|WP_015955341.1|3743741_3744560_+|acyl-CoA-desaturase
MTVSTSAKLPLDWSVIIYMATIHLVALLAFLPSNFNWGAVTVAFILYVVTAGFGITLGFHRLVTHRSFQTPKWLEYILVFCGTIACQGGPIHWVGLHRMHHKYSDTELDPHDSNKGFWWSHLGWMLHNIPADQEIPRYTQDISDDPFYQFCQKNLIPIQVALGLLLFALGGWPFVIWGIFVRLVVVFHCTWFVNSATHKFGYQSHESKDLSKNCWWVALVTFGEGWHNNHHAYQYSARHGLEWWEIDLTWMFIRTLQILGLATNIKLAPKNN
>NC_011729.1|WP_015955340.1|3742264_3743497_-|methionine-gamma-lyase-family-protein
MDNLTLLRSAEKTLFPIFSEIDTQVKQNLKKVLKAFQNGRVGIHHFASVSGYGHDDLGRETLDQVYAQVMGAEAAAVRVQFVSGTHAIACGLFGILRPGDEMLAVAGRPYDTLEEVIGLRENGQGSLCEFNIQYRELSLTSEGKIDWEALSHAVKSNTRVVLIQRSCGYSWRESLSITDIEKIVTLVKGQNPHTVCFVDNCYGEFISHKEPTAVGADLMAGSLIKNPGGTIVTAGGYLAGKAELVEQAMCRLTAPGIGSSGGATFDQNRLLFQGLFLAPQMVGEALKGSHLIAYVFDQLGYPVNPPPLVQRKDVIQAIQLGSPDKLIAFCKAIQRCSPVSSYLEPVPAQMPGYESQLVMAGGTFIDGSTSEFSADGPLREPYIVFCQGGTHWTHIAIALEEAIEAIRQLK
>NC_011729.1|WP_015955349.1|3751325_3751937_-|hypothetical-protein
MAIASYVPMELNRGEITTTESTMIPAYLISQTPGRIRLRLNKNDCHPQKIDQLVNALKEQLEIYRVRSNSQTGSLTIFYATNHWNFEKIADVLQTLNIALLKPEKKENPYPYQSEVAAEVTSFFSGVNHRVGQATEGTIDVRFLVPLGFSFLAVRQLLIKGLSLDIIPWYVFAWYAFDSFLKLHYTSPPSPVKSALTSKSTNF
>NC_011729.1|WP_015955350.1|3752189_3752492_-|DUF5132-domain-containing-protein
MAFKVTDLWENVAEEFGIPGIAAGLGAVVLAPLLIPAVGKVGKPVAKAAIKGSIVLYEKSRGVLAEAGEVLEDLVAEAKVELAEQQTQNPGTAETSSEVG
>NC_011729.1|WP_015955351.1|3752747_3753053_-|DUF5132-domain-containing-protein
MSLIGDTFEGIGGLVEDFGLPGILVGVGALALAPVLAKTGKPVAKSVIKGSILLYEKSKGSLAEAREALEDLVAESRAELAEAQDRRLLEGSGSSSAQPEG
>NC_011729.1|WP_015955352.1|3753070_3755338_-|heavy-metal-translocating-P-type-ATPase
MVNLALAPVKAVNRGESFKKSVALATATSLDKLSLSCPQVAYRIVHDVPGRIRFRIPKIVHDLDYSQALQALVSVDEEITHLKVKRAAGSVTFYYQPEKISQKESRSYCIELIQLANHPDIYLQRDEILSQCEKSDNKISWSALKLPMVATVLALLNGPLGLTLPALVVRGIIAAAAVPVAKRAWESFQEERKLNVDFLDLSAITIVTAQSHFLTSCSMLVLIQLGETIRELTARSSQSKALDLLSSLAQSAWVEREGQKLEIPLEQLLPEDTVIVYPGEQIPVDGHILRGKALIDEQRLTGESMPVVKNEGEMVYASTLVREGQIYVLAERLGEETRAGQTLKMLKEVPIHDTRMENYAAKLADRTVMPTLLLGSLVFALTRNPARAASVLTIDFATGIRVSVPTTIMAALYGAARRGVLIRSGRALEQLAQVDAIVFDKTGTLTQGNIQVIGIKTASPDIAPQRVIQLAAAAEKRITHPVAEAVIRYAKDQKLDIPSRGEWDYQVGLGIRADIEGHDVLVGSERFLIKEGVNVEPLYDHNPELKEASYPLIYVASDGEIMGVLEYTDPLRAESPEVIRALREDIGAEIHILTGDNQQRAAAVAQILNIPPSQTHAEAFPETKAQIVQDLHNQGLTVAFVGDGLNDSAALAYADVSVSFRDGSDVARETADVVLMRNNLEGLVEAITIARNAKKIIYQNAGIVGVPNLCGLAIAATVGINPMTATMINNGSSVLAGMNGLRPVLTAKTEDEEQQ
>NC_011729.1|WP_015955353.1|3755398_3756613_-|hypothetical-protein
MNNVESTCEQQGFEILHSVANRVRLRALDTKTKNRLTEIAQHLRKQAGIQTVRINQDTGNLVITYDQSIVSRAQVQRFLEPYGVTQETPSPELLGSDSYAQTLKRLSSFIPPVVGIAAARGLGVGGWQGLATYIVTSRVTRGVMNQFDLPFVQGSQKDSPLEDKQGDQTLNDGTIETTQSKHPAASDYRVIHEIPGRIRLSIPRVKGDLDYVKTLENLAQRDNRITSVRVNRETGSVVIQYRTGIPSNTRKTALKSSELIALLEQIASDTLNNPNTPKNNPTSLEETTLEAPDVHNNGYGKPQEIQESLEPETVAETTDTDSLSMQESEPVLEEEKATDQPDQQEEQPVSSSEQPTNSIVAVEPDHQRFELSAEEESESPWRRFKACMLTTMLRFMANFPLQQA
>NC_011729.1|WP_015955354.1|3756855_3759336_-|WD40-repeat-domain-containing-protein
MEQWLSIFFKVALPVFKTLVYAGTNHLLSNVREELEDQQKHQVKQVIKTLNVRNHLSGETETIAAVEQIAELGYKTAIELHDLVKDVTTTPNQTNIDFHQQRFQQEKILQQKLVADKRKAIFQLASYQRETTLLLPEVQKSFEHWPLRLFPCQLLESHPGNQPIPLRVLLAPPQISLAQIESPSEIGKLETEKRLSQGIRKFLSQHYSLHNETRRTEFLGGAWKPENFYGEASIKALFWMLKSEPTLILESEIDGKILTFRLAYWGLGQEQYFYGTIFQIPYEEFLLESARKRALKWKETRQKLIKLGKSPEVIERLGGENISNLAILEEAEELEQAGIDITELPLALKTTYHDWENLLNFLGLCHCLVGGWIADIHYLIQNDLPPILPELLPQLIQDQLDNQSSPQLLKTTVSIYGEVLQNLAKERPYWIPELSLKLAKSLSQLPDQSLALEQVNYSLKIWLQQRQLSPVQGLQNLEIVKPTLTNQDREYLKTLQECLATLGDHQRVIQVQGLLSYLDTPKDQNIPEKQLNFSLFQTLNTTSGSVNSLTLTPDGRQLVILGDRSVIEVWTLTPSTPILTQSLTHHCGEVLAFSLSPDQQILATSDHTNTRNYIKLWHLPTETPEKTLFGHKKEIYSLMISPDGQTLISASHKIKLWNLKTGEPFQTLFGHREWITCLGITPDGHTLISGSQDKTLRVWHLTNGELYCTLTGHQGEIKTVAISPDGRFAVSGSTDNTLIVWDIKAGKLVQTLNEHTGAVNAVTFSRDGQYFVSGSDDTTIKVWNCQTLDCVQTLLGNTSPITAIALSNDGQTLINGTKDNTLQFWR
>NC_011729.1|WP_015955355.1|3759530_3760487_+|hypothetical-protein
MNWKYFKKIFRTIGLILAILIGFMGFYAVTRAEIEPKAQIINTLPDISGLGWIENNLFLGVHDAKNGTDNDKPRVSLIKLPDSKSGLGWEPVDLIWPEPIGFSNDLEGVARIPDEFWFIIAESGNNLKTPPFPRLFLLEYAQNQLKLIDSTSWPVPVNNVEGIAVAKIKNQLIFIYAERGDNQPNTEIRWGSLSLNPLKFGSFGGVIYPNPESKQTNIRSVSAMDVDNQGRLYVASAFDPNVDNGPFYSKVWQIGKISEQENNDIQIILESTPKLIAVIDGFKVEGLAIKETNGNQREFIIGTDDENYGGVVRILPLN
>NC_011729.1|WP_157867624.1|3760478_3760961_-|DUF2382-domain-containing-protein
MDNQPINPEKETDNYQIELLQEKLKIKRSRRKIGEVVIRKEIETQFIEIPIRQEKLIVEQIGNETKRLAEINLSRETIADLDLLTHDQINSPVKVVEGKFSSLEEAVEILAMIARQTPHGCTQVQVKLFLEDSKFEQTYQIMFQQYIEKSSNNSISHPSV
>NC_011729.1|WP_015955357.1|3761075_3761954_-|DUF2382-domain-containing-protein
MALIKIQDYNPNYKDDVFRGSDIKGYSVYGNLDQDKVGSVHDILVDESGFLRYLVVDTGLWIFGKKALLPIGRCRIDYPNRRVYATDLSREQVESLPEYHDNMTVDYDYEERVRTAYRRPTTTATTATTATTATRTPSYNRDNYDYGYDRDLYETRKGDHDHIKLYEERLIANKNRQKAGEVTVGKRVETETARASVPVENERVVIERTNPTGGERVVSPGEATFQEGEVARMEVYEETASIQKEAVVREEVNIRKEVDHDQVSAEETLRREELEVDVDGNPVIDHNRNLNR
>NC_011729.1|WP_015955359.1|3763446_3765684_-|FdhF/YdeP-family-oxidoreductase
MDADKQATQPNKPDQGGGLPVIQYWAEHTLSPEGPKLWQTLLHKSACLSCAWGTGGQKGGFTNETGETLQRCMKSVEAISAELQPPVKSHFFDDHTLNELQQLTSLQADRLGRLSFPVILREGKTHYERISWEKIYQIAENAFRKPPERVASYSSGRSSNEAAYLLQLMMRTLGSNNLADCSDLCHVASTVGLKQMFGSGTSMVSLENLQKADCVVLVGSNAPANHPRLLNELIKLRDRGGKVIVVNPVLEVGLVKFASPAFPLKSFIKGSDIASLYLQLIPGSDVALFVGIQKALIEQNLIKTDYLQAYTEGWEAIVNYAQSTPWETITQTCGLSQEEIETAAQMIGTSKGVVFAWAMGVTQHENGVDNVFAIANTALLTGNAGKEGGGTMPIRGHSNVQGFGSMGVTVRLKQEIQEALEKLLGRPLSRVPGYHARDLIEAADRGKIDTLICVGGNLYAANPDLTQAKRALGNIETIFYLATKPNLGHFHGLARKNTIIIPVFNRFENPHKTTTESGNNFVRLNDEGKTHLTQGDLISEVEFITELAHRLYGEYPVNWRKLQDTHYVRQLIAQTIPGFEKMATIDQTQEEFTIGGRIFTEPKFPTASGKANLFITPLPQLTLPKIEDFVLTESVKGIILTLMTVRSYSQHNTVVYKEEDYYRGMPHRHCILMNPDDAQQQGWQEHQRVTVQGDAGKLDNVEIIYGSVRQGAAVMFYPEANILFKAKIDPRCGIPAFKRVPILVY

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Crispr_ID: NC_011729_32

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_32

3796369-3797432

Orphan

N:A

Consensus_repeat	Method
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	PILER-CR
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CRISPRCasFinder
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	CRT

14 spacers

The CRISPR arrays of NC_011729_32

>merge|NC_011729|32|3796369-3797432|PILER-CR,CRISPRCasFinder,CRT
GTTTCCAACTATTCCTATTCAACCCAATAGGTAGGGTTCAGACGATATGGAAGAAACATCAATTAAAGAACTGGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTGGCTTTCAAGAATTGCCATGCTGTATTTGTCACGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGATGGGGAGAAAAATCCCCAGAAACCCAAACTTTTTTGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGGCGCATTGCATGCGCGCGTACATGTATATAACATGTACGAGTAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGGAGCTCGCAAGAGCTCAGCAAGAAGAAGAAGAACTGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTTTCGTTTGAAAATGTTTATGGAAAACCCCCTTGGGTTGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTTTTTTTGGGGTTATTCTACCGGAAAACGTCATACTTGAAGGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGGAATTAGGTAAATTACCTTATGAAATATAGCTATTTTAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTTGCCTCTGAAGAAGAGGTAAAAGGCTGGCTGAAAAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGAATTCTGGGCTTGGCTCTAGGAATACAACGTAGATGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGGTTGTAAATATACAAGAATATGCTTTCAGTTTTCCGGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTCGGATTCCAGAAGGTCGTGAAATCATCAACCAAGATCGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTTGGTCTGTTTGTGTTGCTATTTTTGAGGGTTTTTAGGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGGTTGTAAATATCAAGGATTTCAGTTTTAGTTTTCCGATTAAGTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

>NC_011729|32|11|3796369-3797432|PILER-CR
GTTTCCAACTATTCCTATTCAACCCAATAGGTAGGG	TTCAGACGATATGGAAGAAACATCAATTAAAGAACTG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TGGCTTTCAAGAATTGCCATGCTGTATTTGTCAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATGGGGAGAAAAATCCCCAGAAACCCAAACTTTTTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GCGCATTGCATGCGCGCGTACATGTATATAACATGTACGAGTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GAGCTCGCAAGAGCTCAGCAAGAAGAAGAAGAACT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTCGTTTGAAAATGTTTATGGAAAACCCCCTTGGGTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTTTTTGGGGTTATTCTACCGGAAAACGTCATACTTGAAG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GAATTAGGTAAATTACCTTATGAAATATAGCTATTTTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGCCTCTGAAGAAGAGGTAAAAGGCTGGCTGAAAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AATTCTGGGCTTGGCTCTAGGAATACAACGTAGAT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTTGTAAATATACAAGAATATGCTTTCAGTTTTCCG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TCGGATTCCAGAAGGTCGTGAAATCATCAACCAAGATC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGGTCTGTTTGTGTTGCTATTTTTGAGGGTTTTTAG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGTAAATATCAAGGATTTCAGTTTTAGTTTTCCGATTAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

>NC_011729|32|30|3796369-3797432|CRISPRCasFinder
GTTTCCAACTATTCCTATTCAACCCAATAGGTAGGG	TTCAGACGATATGGAAGAAACATCAATTAAAGAACTG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TGGCTTTCAAGAATTGCCATGCTGTATTTGTCAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATGGGGAGAAAAATCCCCAGAAACCCAAACTTTTTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GCGCATTGCATGCGCGCGTACATGTATATAACATGTACGAGTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GAGCTCGCAAGAGCTCAGCAAGAAGAAGAAGAACT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTCGTTTGAAAATGTTTATGGAAAACCCCCTTGGGTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTTTTTGGGGTTATTCTACCGGAAAACGTCATACTTGAAG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GAATTAGGTAAATTACCTTATGAAATATAGCTATTTTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGCCTCTGAAGAAGAGGTAAAAGGCTGGCTGAAAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AATTCTGGGCTTGGCTCTAGGAATACAACGTAGAT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTTGTAAATATACAAGAATATGCTTTCAGTTTTCCG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TCGGATTCCAGAAGGTCGTGAAATCATCAACCAAGATC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGGTCTGTTTGTGTTGCTATTTTTGAGGGTTTTTAG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGTAAATATCAAGGATTTCAGTTTTAGTTTTCCGATTAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

>NC_011729|32|8|3796369-3797432|CRT
GTTTCCAACTATTCCTATTCAACCCAATAGGTAGGG	TTCAGACGATATGGAAGAAACATCAATTAAAGAACTG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TGGCTTTCAAGAATTGCCATGCTGTATTTGTCAC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	ATGGGGAGAAAAATCCCCAGAAACCCAAACTTTTTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GCGCATTGCATGCGCGCGTACATGTATATAACATGTACGAGTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GAGCTCGCAAGAGCTCAGCAAGAAGAAGAAGAACT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTCGTTTGAAAATGTTTATGGAAAACCCCCTTGGGTT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTTTTTTGGGGTTATTCTACCGGAAAACGTCATACTTGAAG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GAATTAGGTAAATTACCTTATGAAATATAGCTATTTTA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGCCTCTGAAGAAGAGGTAAAAGGCTGGCTGAAAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	AATTCTGGGCTTGGCTCTAGGAATACAACGTAGAT
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	GTTGTAAATATACAAGAATATGCTTTCAGTTTTCCG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TCGGATTCCAGAAGGTCGTGAAATCATCAACCAAGATC
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGGTCTGTTTGTGTTGCTATTTTTGAGGGTTTTTAG
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG	TTGTAAATATCAAGGATTTCAGTTTTAGTTTTCCGATTAA
GTTTCCAACAAGTCCTATTCAACCCAATAGGTAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955379.1\|3787285_3787825_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NC_011729.1\|WP_015955380.1\|3787817_3788591_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NC_011729.1\|WP_015955384.1\|3791537_3792269_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|376775
NC_011729.1\|WP_015955395.1\|3805014_3805845_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270406
NC_011729.1\|WP_015955393.1\|3801374_3802145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
NC_011729.1\|WP_015955396.1\|3806237_3806906_+\|DUF4145-domain-containing-protein	unknown	unknown	gnl\|CDD\|372658
NC_011729.1\|WP_015955389.1\|3798384_3798627_-\|DUF4327-family-protein	unknown	unknown	gnl\|CDD\|372966
NC_011729.1\|WP_015955378.1\|3783583_3786391_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NC_011729.1\|WP_015955394.1\|3802221_3804852_-\|trans-splicing-intein-formed-DNA-polymerase-III-subunit-alpha-N-terminal-partner-DnaE-N	unknown	unknown	gnl\|CDD\|181933
NC_011729.1\|WP_015955392.1\|3801013_3801292_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955386.1\|3793790_3794729_+\|GDP-L-fucose-synthase	unknown	unknown	gnl\|CDD\|187550
NC_011729.1\|WP_015955391.1\|3799792_3800830_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270218
NC_011729.1\|WP_015955381.1\|3788631_3789690_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NC_011729.1\|WP_015955387.1\|3794973_3795813_-\|prohibitin-family-protein	unknown	unknown	gnl\|CDD\|259799
NC_011729.1\|WP_015955399.1\|3807528_3808170_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015955390.1\|3798952_3799195_-\|DUF4327-family-protein	unknown	unknown	gnl\|CDD\|372966
NC_011729.1\|WP_015955388.1\|3797880_3798225_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955385.1\|3792672_3793755_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NC_011729.1\|WP_015955383.1\|3790305_3791442_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340833
NC_011729.1\|WP_015955382.1\|3789930_3790302_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180986

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015955379.1\|3787285_3787825_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	4.90237e-16
NC_011729.1\|WP_015955380.1\|3787817_3788591_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.43161e-66
NC_011729.1\|WP_015955384.1\|3791537_3792269_+\|sugar-transferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	1.20356e-92
NC_011729.1\|WP_015955395.1\|3805014_3805845_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270406	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.61408e-79
NC_011729.1\|WP_015955393.1\|3801374_3802145_-\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	7.30458e-10
NC_011729.1\|WP_015955396.1\|3806237_3806906_+\|DUF4145-domain-containing-protein	gnl\|CDD\|372658	pfam13643, DUF4145, Domain of unknown function (DUF4145). This domain is found in a variety of restriction endonuclease enzymes. The exact function of this domain is uncertain.	0.000419888
NC_011729.1\|WP_015955390.1\|3798952_3799195_-\|DUF4327-family-protein	gnl\|CDD\|372966	pfam14217, DUF4327, Domain of unknown function (DUF4327). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.	4.12027e-40
NC_011729.1\|WP_015955378.1\|3783583_3786391_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_011729.1\|WP_015955394.1\|3802221_3804852_-\|trans-splicing-intein-formed-DNA-polymerase-III-subunit-alpha-N-terminal-partner-DnaE-N	gnl\|CDD\|181933	PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.	0
NC_011729.1\|WP_015955399.1\|3807528_3808170_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.15073e-20
NC_011729.1\|WP_015955386.1\|3793790_3794729_+\|GDP-L-fucose-synthase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.81633e-150
NC_011729.1\|WP_015955391.1\|3799792_3800830_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270218	cd00997, PBP2_GluR0, Bacterial GluR0 ligand-binding domain; the type 2 periplasmic binding protein fold. Glutamate receptor domain GluR0. These domains are found in the GluR0 proteins that have been shown to function as prokaryotic L-glutamate activated potassium channels, also known ionotropic glutamate receptors or iGluRs. In addition to two ligand binding core domains, iGluRs typically have a channel-like domain inserted in the middle of the GluR-like domain. The GluR0 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.57573e-16
NC_011729.1\|WP_015955381.1\|3788631_3789690_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NC_011729.1\|WP_015955387.1\|3794973_3795813_-\|prohibitin-family-protein	gnl\|CDD\|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	1.36871e-59
NC_011729.1\|WP_015955382.1\|3789930_3790302_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|180986	PRK07459, PRK07459, single-stranded DNA-binding protein; Provisional.	7.56571e-70
NC_011729.1\|WP_015955385.1\|3792672_3793755_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_011729.1\|WP_015955383.1\|3790305_3791442_+\|glycosyltransferase	gnl\|CDD\|340833	cd03804, GT4_WbaZ-like, mannosyltransferase WbaZ and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbaZ in Salmonella enterica has been shown to possess mannosyltransferase activity.	6.48275e-170
NC_011729.1\|WP_015955389.1\|3798384_3798627_-\|DUF4327-family-protein	gnl\|CDD\|372966	pfam14217, DUF4327, Domain of unknown function (DUF4327). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.	4.74265e-35

>NC_011729.1|WP_015955387.1|3794973_3795813_-|prohibitin-family-protein
MSRQTVQSWQSLIGGIILALIVLIAFNAFVIINPGQAGVISILGKARDGALLEGLHFKPPLVSKVDIYDVTVQKFEVPAQSSTKDLQDLSASFAINFRLDPLQVVDIRRTQGTLQNIVSKIIAPQTQESFKIAAARRTVEEAITQRTLLKEDFDNALSSRLEKYGILVLDTSVVDLTFSPEFARAVEEKQIAEQRAQRAVYIAREAEQEALADINRAKGKAEAQRLLAETLKAEGGGLVLQKEAIEAWRTGGSQMPNVLVIGDSSKNSVPFLFNLGSLE
>NC_011729.1|WP_015955386.1|3793790_3794729_+|GDP-L-fucose-synthase
MINLRDKQILVTGGAGFLGRQVVQQLLIAGARKDNITIPRSQNCDLRVLENCQKAVFGQDIVIHLAAHVGGIGLNREKPAELFYDNLMMGTQLIQAAYQAGVEKFVCLGTICAYPKFTPVPFKEAELWNGYPEETNAPYGIAKKVLLVQLQSYRQQYGFNGIYLLPVNLYGPEDNFDPRSSHVIPALICKVYEAQQKGETKIPVWGDGSATREFLYSTDAARAIVMATQFYDEPEPVNLGTNFEVSIRELVEMICEVMEFKGEIIWETDKPNGQPRRCLDTTLAQEKFGFVAQMEFKQGLKNTVDWYRQQAR
>NC_011729.1|WP_015955385.1|3792672_3793755_+|GDP-mannose-4,6-dehydratase
MNERKRALITGITGQDGSYLSELLLEKGYEVHGIIRRTSTFNTDRIDHLYVDPHNTEARLFLHYGDLTDGTTLRRILEQVQPIEIYNLGAQSHVRVSFDSPEYTVDSVGMGTLRILEAIRDYQHRTGIKVRFYQAGSSEMFGKVQEIPQKETTPFYPRSPYACAKVYAYWQTLNYRESYEIFACNGILFNHESPRRGETFVTRKITRAIARIVAEQQKKLYLGNLDAQRDWGYAKDYVQAMWLMLQQDEPDDYVVATGETHSVKEFLEIAFKVVNLDWQKYVEFDQRYLRPAEVDLLIGDPTKAKKKLGWQPSVTFEQLVHLMVEADLAALGISMSNGKPSQEFLQDTAYIRHEARVTVD
>NC_011729.1|WP_015955384.1|3791537_3792269_+|sugar-transferase
MTANSQLISVKALQALVRRGFQPLVLRSKPKRSRLEAINGDFAKRLFDIVFSLFVLIFFSPLYLIISLLIAVSSPGPIFYIQERVGKNYRRFNCIKFRTMVHNADEVLESIMANSPQMREEFEDNFKLRDDPRITWIGKFLRLTSLDEFPQFWNVLMGDMSVVGPRPLVPEELYKYGNRIDKVLTIQPGITGLWQVSGRNDIPYPLRVQMDVYYVNSRNFFMDLWVMVKTIGVVIFPHNNGAY
>NC_011729.1|WP_015955383.1|3790305_3791442_+|glycosyltransferase
MKYALIHEWLTPRATGGSELVVREILRHIEADVYALIDFESTNPQSYLYGRAIGKTFLQHFPFARNGVQKYLPLLPLAIEQLDVRDYDVILSSSHAVAKGVLTRPEQLHICYCHTPMRYAWDLTFDYLHSSPAGKGLPGILTRYLLHRLRQWDVISANRVDYFIANSNHTARRIWRCYRRTAKVIYPPVNLERFPFESEKEDFFLTVSRLVSYKKVSLIVEAFNQLKLPLVIIGDGPELNFIRRLAKSNITVLGEQPNEVVEKYMAKAKAFVYAACEDFGIALVEAQACGTPIIAYQGGGALETVRDIRQQPTDGTGLFFYPQTPTALVQAVETFLEFQHQINSESCHSQATKFTPKIFETSYLGFLEDCCRNLSGKN
>NC_011729.1|WP_015955382.1|3789930_3790302_+|single-stranded-DNA-binding-protein
MSLNVVHLVGRAGRDPEIKYFTSGSSLCTLTLAVNRATSKTDEPDWFNLEIWGKTAEVCKNYVRKGSLIGVKGSLKIETWTDTATGANRSKPVIRVDRLDLLGSKRDNNADGVSNYYGDDPTM
>NC_011729.1|WP_015955381.1|3788631_3789690_-|rod-shape-determining-protein
MRAVKQVGFLSRFSLSRDMGIDLGTANTLVYVSNKGIVLEEPSVVAIDQDKNPLAVGEEAKKMLGRTPGNVVALRPLRDGVIADFYSAEIMLAEFIRRSNEGNTLGNPRMVIGIPSGITGVERRAVMEAATRAGAREVGLIDEPIAAALGAGLPVTEATGNMIIDIGGGTTEVAVLSLQGRVLSESVRVAGDELTDSIIQYMKKVHNLVIGERTAEEIKIRLGSAYPSQDQDEPVMEVRGLHLMSGLPRTVTIKGEEIRESMAEPLSVIVDAVKRTLERTPPELAADIIDRGIMLAGGGALLNGIDTLIGHETGIITHIAEDPLRCVVKGTGEVLKNQKLLDRILAETSRNA
>NC_011729.1|WP_015955380.1|3787817_3788591_-|rod-shape-determining-protein-MreC
MFIVRRRWTRRGLRMVLAGLALGTGWFLYQTRSAAIIEFYALITRPFQSDSALVQQQQLTNARVQELQERVKELEQQNQQLKSLLGYFEDQPQPAITAPVIGRSSDDWWQQVILGRGSRDGVEKGAAVTGIGGLVGRISEVTPHTSRVLLISNPTSRVGATITRSRSMGLIQGQGSKIAVMQFFEKVPDVRPGDTVTTSSVSRLFPSGLPIGRVKSVNLEARGPAPEAQIELIAPINNLEWVIIHPLKRQDELNERD
>NC_011729.1|WP_015955379.1|3787285_3787825_-|rod-shape-determining-protein-MreD
MIKLTKLSPKTRRILNGFVIVGSILICIFFSFTRLPGMELLGIGPNWFIIWVVSWSVKRTVFQAIVAGLTLGLIQDGMTSSYPSHVLVFVLIAFITARIQKQRYIKEDLMSVVLIVFMMSLLAETLIAFQYVISGIRPLDEIWIDYQQIALSSAILSSLWTPVLYYPLNNWWENIKALE
>NC_011729.1|WP_015955378.1|3783583_3786391_-|cation-translocating-P-type-ATPase
MSFPTTSSLASATFPNTAQPWHTQPSSQALELLQSDPEQGLPESQITQRQQYYGANELKETGGRSPLQILWEQFTNIMLVMLIAVAVVSAVLDLKNGTFPKDAIAIFLIVILNGILGYLQESRAEKALAALKNLSSPKVRVIRNGKTEEISAKDLVPGDIMLLEAGVSIAADGRLLEAQNLQVKESALTGEAEGVNKQAEVILNEDAPLGDRINLVFQGTEVIQGRAKVLVCKTGMDTEIGHIAAMLQSVESEPTPLQQRMSQLGNVLVSSSLILVAIVVIGGVLRTGWGLFEQLLEVSLSMAVAVVPEGLPAVVTVTLAIGTQRMVRRNALIRKLPAVETLGSVTTICSDKTGTLTQNKMVVQQVQTGCQSFQVTGEGYAPIGEFIPDEERYKTEYQDVQLLLRACVLCNDALLQEKQGSWEIIGDPTEGALLSLAGKAGIYQEALTPSLPRVGEIPFSSERKRMSVVVEGVMLPEQEPPYTMFTKGSPELILERCTHVINGDRPQPLTSEERENILFQNDQMAMQGLRVLGFACRAIEEIPSLESEEIAEQQLIWLGLVGMLDAPRKEVKGAVLRCREAGIRAIMITGDHQLTAQAIAYDLGIAQPGDQILTGRELERFNQSELEEKVEQVSVYARVSPEHKLRIVRALQNRGKFVAMTGDGVNDAPALKQADIGIAMGITGTDVSKEASDMILLDDNFATIVAATEEGRVVYSNIRRFIKYILGSNIGEVLVIAASPLLGLGGVPLSPLQILWMNLVTDGLPALALAMEPAEPNVMKRPPFSPRESIFARGLGLYMVRIGIIFAILTIGLMVWAYNHAQASGDPQRWKTMVFTTLCLAQMGHALAVRSDNRLTIQLNPMSNPYVLGAITLTTLLQLLLIYFAPLRNFFGTHWLSFTELAICFGFSALMFVWIEIEKIIVNAFFVSQKTSSKL
>NC_011729.1|WP_015955388.1|3797880_3798225_+|hypothetical-protein
MAQLTLNLIQGSVTFNFSPEAALKLKQEINQLMETLKAIALNTSSGGKPTPKKAMEYCHTGEVFLEVFCNPNIYPSPFAAKVLLTVRDERIRLTTEAELTRVIEDLDQYLQQVT
>NC_011729.1|WP_015955389.1|3798384_3798627_-|DUF4327-family-protein
MSIQAVSSLQESRYSIDVIKEEARQLVSKGVVSRQQPIYILCQYIPAREWLDVECELERCDYLLRDRLSDLISPESWSDD
>NC_011729.1|WP_015955390.1|3798952_3799195_-|DUF4327-family-protein
MSVSTLPSASTFHYSIKMIQDEVRQLVENGTVSRHQPIYVLCQYIPPREWVCVECELERCDYLLRDQIGDLIASESWDND
>NC_011729.1|WP_015955391.1|3799792_3800830_+|transporter-substrate-binding-domain-containing-protein
MSSVQASPKLRVGIYVADPFVIETDSFSVNNNSQPQTGIELQNEFSDLNSYSKSVNFQGISIDVWEEIAVLENFNYVYFRQETVEDGINAIVKGEIDLLIGSIAITPERLQKVSFTQPYYSSTPALLVKNTPLTFWDVIHPFLRVALISSLSGVLIIHSLIAHLIWLVERHHNSEQFPKEYHKGIREAFWFAAVTMTTVGYGDKVPITKLGRLIAFIWMWMSMVMVSSITAVLATTFTLSLSQQSVKKFSNPEDLRGTKVAVVSGTDTETILKKYQMQAVETKTVNGAINLLFLEQVQAVLSVETALKYYQHEYSNQSLAIVPLYSLPVSYGFALSKKQSFRTKN
>NC_011729.1|WP_015955392.1|3801013_3801292_-|hypothetical-protein
MSTFSTSLTANLIQQQTNYRRWHRHQSKCQILRSQLGFNQVVSSRPAVCQGCSHYHGKAYGQSRTTRTRLICGFHPYGWTANDNCPDWQEKY
>NC_011729.1|WP_015955393.1|3801374_3802145_-|hypothetical-protein
MSQAVTPPQNPSLEPEQEGDEFEFIEPDISDLIIEDDTPVDSWLSEKQQRLLTASAYSSLQREIPFVALANVGLFYAFKQPPLVPDVMLSLGVSVPEDWSQKKNRSYFAWNMGKLPDVAIEIVSNRVGNELGSKLEDYAKARVAYYVIFDPLRCLKGDILYVYELQGLSYHLLDNYWMEDVQLGLTLWQGLFEGTEYNWLRWCDREGNLLLTGDEKAEQERQRAEQERQRAEQERQRAERLAQLLREQGIDPDEIP
>NC_011729.1|WP_015955394.1|3802221_3804852_-|trans-splicing-intein-formed-DNA-polymerase-III-subunit-alpha-N-terminal-partner-DnaE-N
MSFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRSKNIKPIIGNEMYVINADLDDRSKKHRKYHQVVLAKNNQGYKNLVKLTTISSLHGMHGKGIFARPCINKELLKEYHEGLIVTSACLGGEVPQNILAGKLDQAKKVAKWYKDLFGDDYYLEIQDHGSPEDRIVNLGIVKIAKDLKIKIVATNDSHFISCYDVEAHDALLCIQTGKLITEEKRMRYSGTEYLKSADEMRQLFRDHLEDEMIEEAINNTLEVADKVVQDYKILGEPRIPDYPVPPGHTADSYVEEKTWEGLLERLKCRSVIEIPPAYKQRLEYELKMIQQMGFSTYFLVVWDYIKYARDHEIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIERRDEMIKYVTEKYGERNVAQIITFNRLTSKAVLKDVARVLDIPYSESDKMAKLIPVSRGKPTKLKVMISDETPEPEFKQKYDSDPQVKRWVDMAIRIEGTNKTFGVHAAGVVISSQPLDEIVPLQKNNDGAVITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELVKVNKNEIIDVDELPLHERKALEIIAKGELKKLPDDVEKTHKLLERGDLEGIFQLESSGMRQIVRDLKPSGIEDISSILALYRPGPLDAGLIPKFIDRKHGKEPIKYEHQLLEPILKETYAVLVYQEQIMKMAQDLAGYSLGEADLLRRAMGKKKISEMKKHKEIFIDGSTKNGVSQEIAENLFDQMVKFAEYCLSYETQIMTVEYGLMPIGKIVEEQIDCTVYTVNKNGFVYTQPIAQWHYRGEQEVFEYCLEDGSTIRATKDHKFMTTDGQMLPIDEIFEQGLELKQIHLS
>NC_011729.1|WP_015955395.1|3805014_3805845_-|amino-acid-ABC-transporter-substrate-binding-protein
MNKNKITLFFLSLICLTNYSLKVYAETVLEKIQRTGELNAGARIDAIPFGYKTDKGEWTGYSVELLRLIHQDLEKKLNKPIKLNLKEVTIDNRFQTVEKQQVDIVCGATTITQQRLEKVDFSIPFFMTGSQFLVKLEDATNFDINGTLKDKAIAYLPNTTTDQIIRQIYPFAKWQTVTNRDEGVRKLKAGEVTAVVSDGILLVGEIVRQGNNPRDFALMPNVPMTTELYACILPKNNPQWKEFVDQTIGSENNTQLQEQWFNLEKSPFPYIIRTNP
>NC_011729.1|WP_015955396.1|3806237_3806906_+|DUF4145-domain-containing-protein
MNKLYRQRFQELCKQLDKLENTKKNYYSEFLGSYKNYVDDDILLNWKVKVKDLLSKVCREESQHFREFLESETATWGDTNYNILQRMKAVFLAAKEDFEGGYLLSVRSLVQAEMFDSQLEQAEELFKSGYITAAAVIAGVVLETTLRELCDRSSIAHGKLDKMNADLAKAGIYNKLTQKRITALADIRNSAAHGKPEEFTDQDVLDMIRDVTKFVADYLPSH
>NC_011729.1|WP_015955399.1|3807528_3808170_+|Uma2-family-endonuclease
MITVISSPRNQIVLQGVRWETYKALVQDMEGQPGKRLTYDSGRLEIMTPLPIHETYKKLIDRFIEVTTEEMNLEIRSLGSCTWSREDLAQGLEPDECYYVEHELAVRGKTEIDLNNDPPPDLAIEIDITSSSLNRLQIYAALGVSEVWRYDGKTLIFYRLVEEEYQSQERSEVLPLLSRGDILRFLEQHQNMGETSLIRSFREWVREQLAQNK

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Crispr_ID: NC_011729_33

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_33

3838452-3838538

Orphan

N:A

Consensus_repeat	Method
CATTAGTCAGTAGTCATTAGTCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_33

>merge|NC_011729|33|3838452-3838538|CRISPRCasFinder
TATCAGTCATTAGTCATTAGTCAGTAGTCATTAGTCGTAGAGACGTTGGATGCAACGTCTGTACAGTAGTCAGTAGTCATTAGTCGT

>NC_011729|33|31|3838452-3838538|CRISPRCasFinder
TATCAGTCATTAGTCATTAGTCAG	TAGTCATTAGTCGTAGAGACGTTGGATGCAACGTCTGTA
CAGTAGTCAGTAGTCATTAGTCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015955436.1\|3846674_3847295_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_011729.1\|WP_015955424.1\|3832530_3833037_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955423.1\|3831472_3832336_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_011729.1\|WP_157867626.1\|3829828_3831367_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NC_011729.1\|WP_041237781.1\|3827738_3828464_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011729.1\|WP_015955435.1\|3845629_3846310_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955432.1\|3842622_3843816_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|279875
NC_011729.1\|WP_041237782.1\|3849075_3849282_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015955433.1\|3843850_3844201_-\|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl\|CDD\|225057
NC_011729.1\|WP_015955428.1\|3837272_3838388_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|272978
NC_011729.1\|WP_015955427.1\|3834277_3836896_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_011729.1\|WP_015955430.1\|3840105_3841911_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NC_011729.1\|WP_015955434.1\|3844388_3845408_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NC_011729.1\|WP_015955429.1\|3838653_3839466_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NC_011729.1\|WP_015955421.1\|3828620_3829535_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|178539
NC_011729.1\|WP_015955419.1\|3826187_3827660_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NC_011729.1\|WP_015955437.1\|3847865_3848879_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NC_011729.1\|WP_015955431.1\|3842292_3842499_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955426.1\|3833991_3834180_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955425.1\|3833045_3833738_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015955436.1\|3846674_3847295_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.87799e-24
NC_011729.1\|WP_015955423.1\|3831472_3832336_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.81089e-27
NC_011729.1\|WP_157867626.1\|3829828_3831367_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	1.05321e-141
NC_011729.1\|WP_041237781.1\|3827738_3828464_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.89383e-74
NC_011729.1\|WP_015955432.1\|3842622_3843816_-\|AI-2E-family-transporter	gnl\|CDD\|279875	pfam01594, AI-2E_transport, AI-2E family transporter. This family includes four different proteins from E. coli alone. One of them, YdgG or TqsA, has been shown to mediate transport of the quorum-sensing signal autoinducer 2 (AI-2). It is not clear if TqsA enhances secretion of AI-2 or inhibits AI-2 uptake. By altering the intracellular concentration of AI-2, TqsA affects gene expression in biofilms and biofilm formation. TsqA belongs to the AI-2 exporter (AI-2E) superfamily.	2.12523e-58
NC_011729.1\|WP_041237782.1\|3849075_3849282_+\|hypothetical-protein	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.44292e-07
NC_011729.1\|WP_015955433.1\|3843850_3844201_-\|Rieske-(2Fe-2S)-protein	gnl\|CDD\|225057	COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only].	7.7067e-27
NC_011729.1\|WP_015955428.1\|3837272_3838388_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|272978	TIGR00236, UDP-N-acetylglucosamine_2-epimerase, UDP-N-acetylglucosamine 2-epimerase. This cytosolic enzyme converts UDP-N-acetyl-D-glucosamine to UDP-N-acetyl-D-mannosamine. In E. coli, this is the first step in the pathway of enterobacterial common antigen biosynthesis.Members of this orthology group have many gene symbols, often reflecting the overall activity of the pathway and/or operon that includes it. Symbols include epsC (exopolysaccharide C) in Burkholderia solanacerum, cap8P (type 8 capsule P) in Staphylococcus aureus, and nfrC in an older designation based on the effects of deletion on phage N4 adsorption. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_011729.1\|WP_015955427.1\|3834277_3836896_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_011729.1\|WP_015955430.1\|3840105_3841911_-\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NC_011729.1\|WP_015955437.1\|3847865_3848879_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	1.78582e-160
NC_011729.1\|WP_015955429.1\|3838653_3839466_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	3.57104e-69
NC_011729.1\|WP_015955421.1\|3828620_3829535_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|178539	PLN02953, PLN02953, phosphatidate cytidylyltransferase.	8.19011e-60
NC_011729.1\|WP_015955419.1\|3826187_3827660_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	1.01108e-144
NC_011729.1\|WP_015955434.1\|3844388_3845408_-\|DnaJ-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	2.81809e-88

>NC_011729.1|WP_015955428.1|3837272_3838388_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MTSSTVSLCITLGTRPEAIKLAPVIQQFRQIPEFKTHLVLTGQHREMVEQVMKLFDLKADEDLNIMQPKQTLTEITCRSLQGLEAVFQRLQPQIVLVQGDTTTAFAATLAAFYQKIPVGHVEAGLRTNELFNPYPEEANRRLISQLTQLHFAPTTLAVKNLHQSGVTGEIHQTGNTVIDALLTVAEQQPDCPIPGLDWTKYRVLLTTVHRRENWGDPLQNILQGFQLILDKFPDTALLLPLHRNPTVREPIQAALGEHPRVFLTEPLDYAQLVGAIQRCYLLLTDSGGLQEEAPSLGKPVLVLRETTERPEAIEAGTAKLVGTDPSQILASARELLTHETAYQKMATAINPFGDGKASQRIVTIVKNYLNL
>NC_011729.1|WP_015955427.1|3834277_3836896_-|type-I-DNA-topoisomerase
MSTLVIVESPTKARTIRNYLPSDYRVEASMGHVRDLPASADEVPPTYKDKTWANLGVNVEENFEPLYVIPKNKKKIVKELQEALKAADELILATDEDREGESISWHLMQLLKPKVPIKRMVFHEITREAIQSALKNCREINENLVHAQETRRILDRLVGYTLSPLLWKKIAKGLSAGRVQSVAVRLLVERERERRAFHSASYWDLKATLEQEKSPFEAKLMTLGGKKIATGSDFDPKTGQLFPKRDVVVLNEAGAEALKERLTGKLWTVTNTEAKPTTRKPAPPFTTSTLQQEGNRKLGIGSKETMRIAQKLYEEGYITYMRTDSVHLSDQAIAAARTCVEEMYGKQYLSPKPRQYSTKSKGAQEAHEAIRPAGSEFRLPRETGLSGQEFALYDLIWKRTVASQMAEARLTQISVTIGVEDAEFRSSGKQIDFPGFFRAYVEGSDDPEAAIEDQEVILPPLKEGDHPDCKQLDVLGHETQPPARYTEASLVKTLETEGVGRPSTYASIIGTIVERGYAQLRNKALIPTFTAFAVVSLLENHFPDLVNTGFTSKMEQTLDDIATGEAKWLPYLQKFYLGDKGLENQVKLRENEIEPGEARAVPLENLEATVKIGRYGPYIEVQNGEEVVTASIPADLTPADLDPQQVELLLKQKTEGPEKVGLHPETGEPIYMLIGSYGPYVQLGEVTEDNKKPKRASLPKGTKPEDVTLEMAVDLLSLPRTLGNHPATGAKIQVNLGRFGPYVVHDQGKEGKDYRSLKAEDNLFTITLERALELLAQPKKGRGGGRSSTKKPLKELGVHPDDNEPVNIYDGPYGAYVKHGKTNAKMPEGETVETITLEKALEALAEKKTGGKKTTSTRKKTTTTRKKTTTKK
>NC_011729.1|WP_015955426.1|3833991_3834180_-|hypothetical-protein
MLILTQLSINFFPSAVAQFPSFSADSTPTHKMPKDVKRFGEIEVNSVKSPNNFENWYNFSKF
>NC_011729.1|WP_015955425.1|3833045_3833738_-|hypothetical-protein
MNSPRNLVQKSVFNWIVQWSRDFVFSPSISNNTKYLSQKKSTNGKGVIYQVSNQRPASLVTYKFLHEDGKGEILIVLSDLRQFYTTLDQEILRNAENGELEKTEYLCRQRKQIKLNLYTHRLQIFRIKNRQQLTWLIDIDFHKEYSYGSGTAVKVIKSLLFFFLEHPFICPDYRDILDLIAAYNWSHLIIEKSQEFYQNFTSERINCIYSYYTIANSIYKKRLIKAQSIK
>NC_011729.1|WP_015955424.1|3832530_3833037_+|hypothetical-protein
MQSWLDFVIDIPLSEANWKFKSISRIYPPKLSLWIGYLPATEKARHMLAVTKLTGWLSPETSKGKLIQPEKFDPRATHDFLAIYQNCNQWDKTIILFRFQIYGNDSIASQITDTLVQAMSNCSPKEQRYLLSPHYYNLWVDIVSIKLQTIDLNKVTQVWISSSLKGDN
>NC_011729.1|WP_015955423.1|3831472_3832336_+|alpha/beta-hydrolase
MNKHYITCVDSVGTHKMVYTQWGEEDNPNVLICVHGLTRNGRDFDFLARELAKDYCIICPDVVGRGESDYLTEPKDYNLMVYAKDILTLLHHLNLSKVDWLGTSMGGLIGMAIASQPESLIRRLILNDVGPFIPQGAMQRIGGYLLKEQPTFIDLNIAQEYMRSKYQPFGNLTDEQWQHLTQYSVKSLPEGGYTLNYDPQISFPYQNTPLESLKAQEFWQWWEGISCPILLLHGQESDLLLPDTISQMKEIHPDMTVVSFPDVGHAPALMNDEQIQIIKNWLAETKS
>NC_011729.1|WP_157867626.1|3829828_3831367_-|apolipoprotein-N-acyltransferase
MGLTPAPVYAWFLAWGAIVPLWILLIYNPQKPKSNHLDFNKKNPVKENFLLGLMWGFGYHGLALSWITGVHPMTWMGVPWLASLAIALFCWVFIASWGAILVGIWSLGMTWINSKFKLTFVGLRVLIGVALWCALETLWSQGDLWWTSLSYTQSPHNLLILHLAQISGPLTITASIVAINGLIAEIIIYLLTHKPNSLKLTLKLLSIPIALLLTLHLIGFILYNRPLVNSNDSAIKVGIIQGNIPNEIKLYPLGWKKAIEGYTKGYNLLADEKVDIILTPETALPFFWKDIVNNSSFYQAILDKKVPAWLGAFGEQGKSYTNSLFTVTGEGKRFSRYNKVILVPLGEYIPFEEILGGIINRLSPLDAHLTRGKPNQIFDTPFGRAIVGICYESAFSEQFRRQATQGGEFIITSSNNAHYSPTMPAQHHAQDVMRAVETDRWAARATNTGYSGIVDPKGRTLWISGLNTYETHADTIYRQQTKTLYVRWGDWLTKGLILMAIASLMINNKITQ
>NC_011729.1|WP_015955421.1|3828620_3829535_+|phosphatidate-cytidylyltransferase
MPWTRIVSAIIAIAFALGIIITGGWYFTFGVCLLVFLAQLEYFRLVRAKGIAPAAKTTLVVSQLLLITATVAPTLTDAVFPLAGALICFYLLFQPKLATIADISSSILGLFYGGYLPSYWVRLRVGFAQAVTPIDIAGIDIGGNNLPLMGYWPHSWTHLKLFPPALTVTFLAFGCIWAADIGAYVMGKWFGRTRLSEISPKKTVEGAIFGIMGSILVAEWGAWYLEWPYWEFTGLLLGLLIGIVSLLGDLTESMMKRDAGVKDSGELIPGHGGILDRTDSYVFTAPLVYYFVTLLLPLLSNFKH
>NC_011729.1|WP_041237781.1|3827738_3828464_+|response-regulator-transcription-factor
MVLKSNNNKIMVVDDDAAVRNLISRFFGYNNYDTQTAPDARTARELFQRFQPDLVILDVNLPDESGFKLCQEIRKTGVLVLMLTCMTDTNYVLEGFEKGADDYLTKPFDLEILKAKVGALFKRRLADKPYHDSSFNNRIIFDKLVIDVEKCQVTVNNNLVLLTTLEYDLLYFLATHPNRVWDRSELLSSVWSDENEEDKAERKVDVHIGQIRKKIGDMDGKLIKTVRGKGYMFEPPVPISL
>NC_011729.1|WP_015955419.1|3826187_3827660_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKSLDSFFKSQSQTPIIETLASLINKPDAAFYTPGHKRGQGSGQNLVNLLGSSVFRADLPELPELDHLFAPEGVIHKAQSLAAEAFGSAQTWFLVNGSTCGIMAAILATCQKGDKIILPRNIHQSAIAGLIVSGAVPIFVNPAYNPIDDLTYSITPEGLETALQENPDTKAVMIVYPTYQGICGDLEALISLTHRHNIPFLVDEAHGGHFAFHSLLPPSALSLGADLTIQSTHKVLGSFTQSSMLHLQGDLVNPQRITKALQLLQSSSPSYLLLASLDGARQQMALEGHQILTKTLQLAEIAREQLSQISGLSVLTLDNPRPEFRWLDITRLTVNVAQLGLTGYEVDEMLRQQMGVTAELPLLKHLTFIITFGNTQEDITKLVQGFAAIASSSSFNPLRVSVPFPLSDTPMGISPRDAFFRPTETLDIDQSVGYISAELVCPYPPGIPVLMPGEKITPQAVAYLQQVLSLGAMITGCSDPTLKTLNVVRF
>NC_011729.1|WP_015955429.1|3838653_3839466_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNIEGKTALVTGASRGIGRAIALELAQQGIKRLLLVARDRSRLAALAQEIKALGVETITLALDLTQPIEVNVAIARAWKTHGPIHLLVNCAGVAHQAPFLESDPQKIGEEISLNVMGMYNITRLVAKRMVTQREGTIVNVSSLMGKVAAPTMSTYSATKFAIVGFTQALRSELAPYNIRVVALLPSLTHTDMIKRLQLFRGVLPMTPEQVAKALMVGLRQDLSEILVGWQSHLAIWCLRLAPWLLDKILVLTSPLARFSRKTANQLTVTS
>NC_011729.1|WP_015955430.1|3840105_3841911_-|pyruvate-kinase
MQPRTLPRRTKIVATIGPASQDKETLRQLIQSGATTFRLNFSHGTHDDHQRNIRLIRQTAFELNQPVGILQDLQGPKIRLGKFECQSIYLKPGDPFIITSRPQVECNQQISYVSYEYLAEEVPCGSRILLDDGKVEMLVENVDLQQKDLHCRVVVGGTLSSNKGVNFPGVYLSVKALTDKDKKDLVFGLDQGVDWVALSFVRNPQDILEIKDLITNAGKSVPVIAKIEKHEAIKEMEAILSLCDGVMVARGDLGVELPAEDVPILQKRLIVTANRLGIPIITATQMLDSMVNNPRPTRAEVSDVANAILDGTDAVMLSNETAVGKYPVEAVATMAKIAERIEQEKEQLTARSYPSNKHSIPNAISSAVSQIAEQLEASAIMTLTKSGATARNVSKFRPKTPILAVTPHVDVARQLQLVWGVKPLLVLDLPSTSQTFQAAINVAQENYLLVDGDLVVMTAGTLQGVSGSTDLIKVEVVKAILGKGIGIGQGSVSGRARVAHKPQDLNHFEPGEILVASSTNKEFVEVMRKAAGIITEEASLTSHAAIIGLRLGIPVIVGLNNATQLIREGAIVTLDAQRGLVYSGAMTSSFLKGTEANLPIP
>NC_011729.1|WP_015955431.1|3842292_3842499_-|hypothetical-protein
MLFMAISYYFLISFVLFIYWLKFWLTDSTTPKTHLKSWLILMVGTSLWPLVLPFAYLELLTKISQQRS
>NC_011729.1|WP_015955432.1|3842622_3843816_-|AI-2E-family-transporter
MVNADSSKPKGNWLQRWWGTLNSVSRLLVITLAAPLTVLNAWAFSNIFGYFQSLFVIILLASVVAFLLSYPVNWLESKGVKRSQAAIVVFLFTVLTFLAVGLTLVPVAYTQAQQLVARLPEWLDSGQHQLMMLNERVDEWGLPLSLDGLIAQINSRLAAELQSLAGRTLNIAVSLTVFTVVKLLDVLLTIILTFYLLLHSRDIWQSLIEWLPKPIQRPFSQTLRSSFQNYFLGQIISATCMAVGLTGGFLLLKVPFGLLFGLSIGLMALIPFGGSVGIVTVTLLIALRDVGLALQVLASALVVQQIVENGIAPRILGSVTGLNPFWILLALLSGARIGGLLGVIVAVPSAVMIKEALSLIRSVPTGDDLLSSLVKHESSTSDDQAHFTEEKSIRKNH
>NC_011729.1|WP_015955433.1|3843850_3844201_-|Rieske-(2Fe-2S)-protein
MSWTKVLPVEALASGQRQVVSVGQQKILLINHNGQLYAVNNACPHLKLSMKNGKITEQGSIICPWHKSAFDLQSGEATDWTPWPPLVGKAMGMVSKQKPLQVFPVRIEDNSIWVEV
>NC_011729.1|WP_015955434.1|3844388_3845408_-|DnaJ-domain-containing-protein
MASTDFKDYYGVLGVNKTASGEDIKKAFRKLAVKYHPDRNPGDKQAEDRFKEISEAYEVLSDPDKRSKYDQFGQYWKQAGQTPRGWSPNGAGVNVNVGDFDFSQFGTFEEFINELLGRASTTGGTRNRSYNYRTRTSPTGYGDFGGFNDFSSGFAGQSSPVSADRESHIRLTLREAFQGVKKTLALGDEKIEVNIPAGTKSGNRLRVRGKGKTNPYSSERGDLYLIVELQPHAFFQFEGDNLICEVPITPDEAVLGASIDVPTPDGMVTMKIPAGIRSGQTLRLRGKGWPNIKGGRGDQLVRVVIDTPKTVSNTELEYYQKIRDTRSYDPRSHLHQVHL
>NC_011729.1|WP_015955435.1|3845629_3846310_+|hypothetical-protein
MFFNSPFKIFALTGICLFIGIAQPDKVRADSPLTSTDLAIAYQDLPIVRLAQQEKKVQGRILTFLLGNAPNDQKAAVINALGTRFEGQNNANLFLVGLAQEKRIPLDRITLNDLSSSDRFVLGYLLAMDTYLELSPLRPNATDDLWGASPLELISQAAFALPNDFTVHFIYALVQGQSDFSSSWCSIYLAPNLVLKLFPQPRRNMRQDAINSAMDYINLYRPNCEK
>NC_011729.1|WP_015955436.1|3846674_3847295_-|pentapeptide-repeat-containing-protein
MNKQCLSMLQQGTIRWNAWRKENPHLEIDLRGIRVSNHHFPGINLKQADLRGSYLVGISLEGANLEGANLCGVNLEGANLKNANLTEASLVGANLKTVNLTKALLKRAFLNGVYLNHSILDDCNLRNADLRGAIFEGTSLVNANLCFADLRRCQFDGANLEGATLTNAILKDNQKIDEIIFAEFYPLTQQSLEEATSNRQPYKLAG
>NC_011729.1|WP_015955437.1|3847865_3848879_+|tRNA-dihydrouridine-synthase-DusB
MVSLASSLQKKLSTPLKIGSIELNSRVFQSPLSGVTDLVFRRLVRRYAPISMMYTEMVSATEIHHLKQLPKIMEIDSQEHPISIQLFDCRPDFMAEAAMKAVAQGAKTVDINMGCPVNKITKKGGGSSLLRQPEIAQNIVKTVVKAVDVPVTVKTRIGWNDDEINILDFAKKMEDAGAAMLTLHARTRAQGYNGTARWEWIKKVKEVLSIPVIANGDIFSVDAAIRCLEETGADGVMCSRGTLGYPFLVGEIDYFLKTGTLLTPPTSLQRLECAKEHLQGLWDYKGQRGIYQSRKHLTWYCKGFAGASVLRDQVSNINSLEEGYHLIDQAIASLVNS
>NC_011729.1|WP_041237782.1|3849075_3849282_+|hypothetical-protein
MVSTKKRIYAQENIFEYWVVDIKNKKIIVYRSPELDNYQETIELSSEAKICPLAFPELEIVIADIFKL

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Crispr_ID: NC_011729_34

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_34

3879424-3879536

Orphan

N:A

Consensus_repeat	Method
TCTGCGGAGCAGGGACGAAGTCTAACCCAACACCCGATTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_34

>merge|NC_011729|34|3879424-3879536|CRISPRCasFinder
TCTGCGGAGCAGGGACGAAGTCTAACCCAACACCCGATTTAGTTTTTGTGTAGGTTTGGCTTTTGGAACGTTCTGCGGAGCAGGGACGAAGTCTAACCCAACACCTGATTTAG

>NC_011729|34|32|3879424-3879536|CRISPRCasFinder
TCTGCGGAGCAGGGACGAAGTCTAACCCAACACCCGATTTAG	TTTTTGTGTAGGTTTGGCTTTTGGAACGT
TCTGCGGAGCAGGGACGAAGTCTAACCCAACACCTGATTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_041237784.1\|3875619_3875871_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955478.1\|3885826_3886369_-\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
NC_011729.1\|WP_015955471.1\|3881929_3882268_-\|DUF86-domain-containing-protein	unknown	unknown	gnl\|CDD\|225236
NC_011729.1\|WP_015955473.1\|3882926_3883175_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_157867451.1\|3875332_3875506_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955470.1\|3880259_3881732_+\|peptidase-C14	unknown	unknown	gnl\|CDD\|319862
NC_011729.1\|WP_015955462.1\|3871548_3872922_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955460.1\|3869026_3870109_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NC_011729.1\|WP_015955477.1\|3884517_3885504_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|180960
NC_011729.1\|WP_015955461.1\|3870454_3871141_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|275103
NC_011729.1\|WP_015955475.1\|3883440_3883686_+\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|377095
NC_011729.1\|WP_015955474.1\|3883197_3883398_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041238302.1\|3882254_3882593_-\|DNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|224583
NC_011729.1\|WP_015955466.1\|3876365_3877622_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NC_011729.1\|WP_015955469.1\|3879642_3880194_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955465.1\|3875898_3876258_-\|NAD(P)H-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|313802
NC_011729.1\|WP_015955467.1\|3877690_3878440_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_011729.1\|WP_015955468.1\|3878474_3879362_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_013321375.1\|3886524_3886620_-\|photosystem-II-reaction-center-protein-T	unknown	unknown	gnl\|CDD\|183353
NC_011729.1\|WP_015955463.1\|3872954_3875300_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_041238302.1\|3882254_3882593_-\|DNA-polymerase-subunit-beta	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	1.03626e-14
NC_011729.1\|WP_015955478.1\|3885826_3886369_-\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	7.10397e-81
NC_011729.1\|WP_015955461.1\|3870454_3871141_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|275103	TIGR04283, glycosyl_transferase_family_2, transferase 2, rSAM/selenodomain-associated. This enzyme may transfer a nucleotide, or it sugar moiety, as part of a biosynthetic pathway. Other proposed members of the pathway include another transferase (TIGR04282), a phosphoesterase, and a radical SAM enzyme (TIGR04167) whose C-terminal domain (pfam12345) frequently contains a selenocysteine. [Unknown function, Enzymes of unknown specificity].	1.19813e-107
NC_011729.1\|WP_015955477.1\|3884517_3885504_-\|30S-ribosomal-protein-S1	gnl\|CDD\|180960	PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed.	0
NC_011729.1\|WP_015955460.1\|3869026_3870109_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	1.12031e-89
NC_011729.1\|WP_015955470.1\|3880259_3881732_+\|peptidase-C14	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	2.37724e-55
NC_011729.1\|WP_015955475.1\|3883440_3883686_+\|UPF0175-family-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	6.35913e-23
NC_011729.1\|WP_015955471.1\|3881929_3882268_-\|DUF86-domain-containing-protein	gnl\|CDD\|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	2.9625e-33
NC_011729.1\|WP_015955465.1\|3875898_3876258_-\|NAD(P)H-quinone-oxidoreductase-subunit-M	gnl\|CDD\|313802	pfam10664, NdhM, Cyanobacterial and plastid NDH-1 subunit M. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. homologs of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 sub-complexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The cyanobacterial NDH-1 complex contains additional subunits, NdhM and NdhN, compared with the minimal set of the bacterial enzyme and these seem to be specific for thylakoid-located NDH-1 of photosynthetic organisms. The three subunits of NDH-1, NdhM, NdhN and NdhO are essential for effecting cyclic electron flow around photosystem I, by supplying extra-ATP for photosynthesis in both plastids and cyanobacteria.	5.36482e-75
NC_011729.1\|WP_015955467.1\|3877690_3878440_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	1.36593e-27
NC_011729.1\|WP_015955463.1\|3872954_3875300_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.55002e-70
NC_011729.1\|WP_013321375.1\|3886524_3886620_-\|photosystem-II-reaction-center-protein-T	gnl\|CDD\|183353	PRK11875, psbT, photosystem II reaction center protein T; Reviewed.	5.95422e-10
NC_011729.1\|WP_015955466.1\|3876365_3877622_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0

>NC_011729.1|WP_015955468.1|3878474_3879362_-|hypothetical-protein
MTSSSQNEQNFNPLGKLASLIALLAIALYFTGWIYRWSYFGFFQIEVTTLNLPLESFYLAAFQALFGHPLTILRTIIAFIVACILIVINLKFIDIVKKIIDVIQKKWKNNAVKIWKNNTLQILNKLNIRKKYLIKLNPINPSRQDLIKFLVSLIDELVIVFLALAILFLLAYWQGDEDAWKDVVNETSRLPVITVAIPDKNAALGRKLNDLSNPSDFRIIGAQSIYDKLLGQELSDSNQSRVWRLLIDRDGYFYIFPALPKKDQYKTVPVLIIYKSGSGDQLTIISSPQSWKNLP
>NC_011729.1|WP_015955467.1|3877690_3878440_-|HAD-family-hydrolase
MVTIICKNRQFDHVQGIIFDKDGTLENSQDYLRELGLKRVRLIDAQIPGIGEPLLMAFGITENKLDPTGLMAVGSRLENKIAAAAYIAETGRSWFEALTIAQNAFNEADKYLQSNRKTSPLFTGCLEVLRDLAGGGLKLGILSADSRENVKNFVEIHQLSNYIHLAMGTDQGLHKPDPELFIQACHQLGVVPEYTLMVGDAQGDLEMARQAKAAGVIGICWTHSQAVHLEQADVFITQLDQIQIVNTQA
>NC_011729.1|WP_015955466.1|3876365_3877622_-|methionine-adenosyltransferase
MTRRYLFTSESVTEGHPDKICDQISDTILDALLSQDPYSRVAAEVVVNTGLVLITGEITSKAQVNYVDLARQKIAEIGYTDSNNGFSANSCAVLVALDEQSPDISQGVTKAQERREQLSDDELDHIGAGDQGLMFGFACNETPELMPMPISLAHRIARRLAAVRKTGELPYLRPDGKTQVSVIYEDGKPVGIDTILISTQHTETLGQITDNAAIQKTIKDALWQAVVTPSFGDIEIKPDNNTKFLVNPTGKFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFSGKDPTKVDRSAAYACRHVAKNIVAAGLADKCEVQVSYAIGVARPVSIMIETFGTGKVSEEKLLEFVKEHFELRPAGIIQAYNLRHIPQERGRFYQDVAAYGHFGRTDLDLPWEKTDKVALLKDAFSQPAIVAG
>NC_011729.1|WP_015955465.1|3875898_3876258_-|NAD(P)H-quinone-oxidoreductase-subunit-M
MLLKSTTRHIRIYTAEIQNNELVESDNVLTLDVDPDNEFLWDEDSLQKVYRKFDDLVESYSGEDLTEYNLRRIGSDLELFIRSLLQQGEISYNLDSRVLNYSMGLPRVESPETEGKYRL
>NC_011729.1|WP_041237784.1|3875619_3875871_-|hypothetical-protein
MSKSLNPWNYKPWWCQPWSILLTGVLIVGGSWLMFQTIWVTVLVAMPILVWWIYFLILWPKFVRSQILLTSLEPSQDSPNFNR
>NC_011729.1|WP_157867451.1|3875332_3875506_-|hypothetical-protein
MTNKLDIDVLTADDIQVLFRYRMIITANISKFRSIPIQELSRLAIASQILRTPTRLD
>NC_011729.1|WP_015955463.1|3872954_3875300_-|SpoIIE-family-protein-phosphatase
MDNSEATLQCQNLTCLASNPATHQFCLKCGTPLVRRYLRVIGDGVKTDYQPGELLDERYLIKQSQIVLDTKPALSPQAPEEFPNFILPYLKLFSYKLHIPQIYGYIPPSDDQKDQTMWLLEYGTVPTNATGELKYSELLPSLEQCWPEASEMRQLNWLWQMAKLWQPLVNKEVASSLFNSDLLRVNDRHIQLLELHLDHDVKVNFKPLGKLWSQWVSSASPRIRDFLGQLSQQLETGKITRTEQLISLLDLALFNLGQSQKRTYQIFTVTDTGQTREHNEDACYPVSDRVITFDEQETSLAIVCDGIGGQEGGEIASNLAIETLSRDILNFAQTSSPWNPIQYISSIEKAIAHANDAISGRNDQENRHERQRMGTTLVLGLNHNHEMYIAHVGDSRVYWITPNSCQQITTDDDLASREVRLGYLAYRDAVQYPNAGALVQALGMSGSPSLHPTVQRFILDENCIFLLCSDGLSDYDRVEQFWQSEIVSIINENKDLSEVGKQLIKIANEKNGHDNITIALIYCQVEPKDQDSQTPLSFSELESSISSLSGPTFIEQTENFNLQEEEDADIPTVISSPVTPATPLSSPTPTTSVPPRSRSPFPLLLSLLGVGIAIIGGGYLGQKLLFPNLSVNKSPTTSPTVSPIIPNSSPEVLETLNKGELIEFTTTTTLNISGETSTETPPETSQPISQGSIFQVVEVREDTVLLKDCLSQGVESAVNPSSSPEISVLKTSLKSEEYKTIPPNSPSVQKLKNCQVSNPIDPSESSSPTPEKSPLPTTAPE
>NC_011729.1|WP_015955462.1|3871548_3872922_+|hypothetical-protein
MNKSRKSRKRFKYLSVVKKLMIWVGKTAFLIGISFLIIFISVEFLIPTQPRSVFSDATVEENQPQEILPPSPSIPHWLTSSEEPSYSKAGQPLTPEERQYISHILGEINPPTSPLEFEQMPLFILHDTSGEIDIETINEKKRQAIGPYGDGIAAYIPREGEAIITRPGFFNRDRPTATAYEKALDITSEKNRDQQVHQIWKLINNHSKQIPLKEAINDINLDQSILFQRAKVWLETPSEKRFNQLKKRLNLDGAKTAGLWTVRHICQSVLSDDQSALILAKSSKDIKPLKNSCQKVIPVLSTSHQRVRSSVHIELIQKRGSECYTTNAQVKHYNSLVSNSLKIPNNKIVPLQTLTRPAYTVSQYQNLTLLYLRSALEAGYFPKITTHFWVDRGEVGLIGDHCDPRGLDLNYFYQMISETLGDSWGTIYGIEPNYGLDAGQGHNVWWSDEIMGTFPPF
>NC_011729.1|WP_015955461.1|3870454_3871141_-|glycosyltransferase-family-2-protein
MALISIIIPVLNEGKKIEKTLVRLGHDLDIEIIVVDGGSQDQTVKIAQDLGVKVISCPVSRRADQMNLGASVATGEILLFLHADTILPDDYKNWVKLTLSQPQIIAGAFQLGIESEQLALRLIEVMVNWRSRFLSLPYGDQAIFVDSGVFQQMGGFADLPIMEDFEWVQRLRRRGKIGIAPVSVLTSDRRWRKLGVFQTTLINQLVILGYYLGVSPDKLATFYRKKPK
>NC_011729.1|WP_015955460.1|3869026_3870109_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MPQEQLYNIIAFLISNTMVLWSTPVVKTVGLKSGCVDLPNERKMHKRPMVRVGGISIFIGTFFALLSIWWLGGFAGLSTEKEWEIWGVVLGGFAFFMIGLADDLYNLSPSSRLLMQTVVSSIAWGVGVRIDFLSIPFYGLVDTAWLSLPITVIWLVGVTNAINMIDGLDGLAAGVCGISAVVLLMVTLVMHQPGAALIAAALAGGALGFLRYNFNPAQIFMGDGGAYFMGFTLAGVAVIGLVKVTAVATVAVSAVVAVLLPYLILAVPILDMSTVIITRLSQGRSPFKADKRHLHHRLIQAGISHRLTVLFIYALTLWVGSLALGFSNVPSGWGFAIGATLLLFYVGWQAWRNRRQVNNE
>NC_011729.1|WP_015955469.1|3879642_3880194_+|hypothetical-protein
MKFFLSVLTLTIATILSVTGLIGNARTIPNQEVAQRSTTSSQRKPLPLNVPELAIIRLKNRSSYTGNLTVFNTNNLKLEANGNSNTFPLSQVKEIEFQGDVYINNPDGRIRRVPWRGGEKILPGLPITAFKLGNPPKTAILNLNSLTPEGYNRLSKDFAKKHGIKRILMDSPEKVTIKIEEIE
>NC_011729.1|WP_015955470.1|3880259_3881732_+|peptidase-C14
MFLLKLLYRVYIVMGLGLIAFGVSACKPTTEATPIPVRSPVSISNNPQFIAQKQSKIALVIGNANYEEEALSNPVNDATDIANALKELGFEVTLVTNKDLPTMEEAIDNFSRQLQGGVGVFYYAGHGVQVEGENYLVPLKAKLEREKDVKYEAYPLGKVLDRMEEAENGVNGVNIVIIDACRDNPFYRRWRSNSRSSTISRGLTAVYPPSGIIIAYATRQGDVASDGKTGQRNSPFTSALLQHIKTPNVDVQVMFRRVNTLVRQKTDNQQEPWTEGNLFGDEFYLNPQLVATSPQPSPIPVITIPTPKPSPSPPIAIIPIPPPSTPSNQPRSTLISSTTGVDYTPLRELLLQKKWREADQKTWDLMETANNRQQQGVLDGRSINKFSCEDLRMIDREWLNASGGKFGFSVQLAIYKQTGNTPGSFNEEAYRRFEDRVGWREKSYKDLTWGTNAPSIAPQGHLPMGGGESLGLFRYVKSSSFSLRLVNCNI
>NC_011729.1|WP_015955471.1|3881929_3882268_-|DUF86-domain-containing-protein
MNRDRASIIDLVNAAQKIKRFSVGLDRLTLLEDEQKQSAILYQIIVIGEAVKRLSVEFRNQYPSIPWRDIAGMRDIVTHQYDRINIETLWDVIDKDLPELMVLIEPLLSELQ
>NC_011729.1|WP_041238302.1|3882254_3882593_-|DNA-polymerase-subunit-beta
MATELIPLIEKRTGLSSLSIASFCEYWQITKMALFGSVLRSDFNDNSDIDVLLKFAPNARQGLLTLARIKHQLEEFTGREVDLLIWQSIEKSENPIRQAEILSSAQIIYEQR
>NC_011729.1|WP_015955473.1|3882926_3883175_+|hypothetical-protein
MISNIQKPLKVNATLATLLSELGEECETVLFLLSQLKLSNLTDEQKGDILAELTGSITHLHVHTQNLPDLIGDEILSLPEDD
>NC_011729.1|WP_015955474.1|3883197_3883398_+|hypothetical-protein
MNKELSNMNNKELRQYLSEHRHDEEAFSQALEILLSRKKDLLKYPPPSQMDYQEIEAIFKASLNQE
>NC_011729.1|WP_015955475.1|3883440_3883686_+|UPF0175-family-protein
MSLIISDEILNATGMSASELLIEIAVMLFQQERASLGKASKIANMNYVEFQQLLAQRNISMHYDVEEFEEDIKTLKETGWL
>NC_011729.1|WP_015955477.1|3884517_3885504_-|30S-ribosomal-protein-S1
MTTTKNLSTKTIGFTHEDFEKLLDQYDYHFSPGDIVAGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVDDPSEVLQANETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFATNRGGALVRIEGLRGFIPGSHISTREAKEDLVGQDLPLKFLEVDEDRNRLVLSHRRALVERKMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVMIIDLDAERGRISLSTKQLEPEAGDMLKNRDLVFEKAEEMAAKYREKMRAEAEGTPIEEEIDAPSALDEEELALAAAEE
>NC_011729.1|WP_015955478.1|3885826_3886369_-|transcriptional-regulator-NrdR
MECPYCQNTSSRVLESRSTEAGQSIRRRRECLQCKHRFTTYERIEFVPISVLKKDKSKESFDRSKLLRGIVRACEKTEVSAQQIENVVEEIEARLQQSPRREITSQEIGQLVLQYLRELNEVAYIRFASVYGEFKGITDFVETLNQLQQEERESSSSPEWSDAGEEATVIEDSSQVMASS
>NC_011729.1|WP_013321375.1|3886524_3886620_-|photosystem-II-reaction-center-protein-T
MESVAYILILTMALAVLFFAIAFREPPRIEK

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Crispr_ID: NC_011729_35

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_35

4019765-4021254

Orphan

N:A

Consensus_repeat	Method
GTTTCCAACAATTCCTATTCAACCCAATAGGTAGGG	PILER-CR
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CRISPRCasFinder
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CRT

20 spacers

The CRISPR arrays of NC_011729_35

>merge|NC_011729|35|4019765-4021254|PILER-CR,CRISPRCasFinder,CRT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACGTGGCGGGGGCCCAGGATAACGTTCCCCCCTTATACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACTTGCTGCAATCCCAAAGGAAAACCAAAGGGGGTTTTCCTCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACCAAAATTTTGGGCGAAACCTTGGACGCTTTTAATTGCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACAATCTTGACCAAGAGAGCGGAAAGCCCAATTCCAAACCCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACGAGGCTGCCGATCCGGTTTTGCAATAAACTGAGTTCGCCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACGTGATTCCCAAGGCTGTCCAGATCCCTGGACCTACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACAAAAACATCTCCGTCTTTAAATACGGATGTTTTTTCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACTCCCCTCCTAAGTGGGATAAAATTAAGCATGAAGCATGGTCCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACCCCCTCTTTGATTCTGCAATGCAGAGAGGATAACGTTCAACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACGAGGAAGGCCCCACCCATCAAAATTAATCATCTACGCCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACTACTTAATGCACCTATTGAATCTAGCTGTTCAGCAACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACCTGAAGCGTACAAGAAAGTTTTGCCTTTCAATTCCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACCCCGGATCGGGAGTTTGTAGCTCTCCGATAAACCAACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACTGGGCTAAGATTTTAGACCGCAGACGGTCAAAAAACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACGCTTGTTCAACGTTTTCTTGCGCCCCTTTTAGGGCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACATAACGTCAGCCTCTTGAGCGCCATTTCGCAAACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACAAACCCTGCACATATCAGCCAGCACGTCAGACCCCGGTGTCCCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACCTTATCTCTATGGCTATTGCTATCAATTCTTCGTAGACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACTCCTTTTGGGAGAAACTTTGAGTAATCCACATGCAATACCCTACCTATTGGGTTGAATAGGAATTGTTGGAAACGAAATTTAATTGTCTTTTGAGGAGACTTACTTTGGTTTCCTACCTATTGGGTTGAATAGGAATAACTGAAAAA

>NC_011729|35|12|4019765-4021181|PILER-CR
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GTGGCGGGGGCCCAGGATAACGTTCCCCCCTTATA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TTGCTGCAATCCCAAAGGAAAACCAAAGGGGGTTTTCCT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CAAAATTTTGGGCGAAACCTTGGACGCTTTTAATTG
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AATCTTGACCAAGAGAGCGGAAAGCCCAATTCCAAACC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAGGCTGCCGATCCGGTTTTGCAATAAACTGAGTTCGC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GTGATTCCCAAGGCTGTCCAGATCCCTGGACCTA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AAAAACATCTCCGTCTTTAAATACGGATGTTTTTT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TCCCCTCCTAAGTGGGATAAAATTAAGCATGAAGCATGGTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CCCCTCTTTGATTCTGCAATGCAGAGAGGATAACGTTCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAGGAAGGCCCCACCCATCAAAATTAATCATCTACGC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TACTTAATGCACCTATTGAATCTAGCTGTTCAGCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CTGAAGCGTACAAGAAAGTTTTGCCTTTCAATTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CCCGGATCGGGAGTTTGTAGCTCTCCGATAAACCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TGGGCTAAGATTTTAGACCGCAGACGGTCAAAAAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GCTTGTTCAACGTTTTCTTGCGCCCCTTTTAGGG
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	ATAACGTCAGCCTCTTGAGCGCCATTTCGCAAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AAACCCTGCACATATCAGCCAGCACGTCAGACCCCGGTGTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CTTATCTCTATGGCTATTGCTATCAATTCTTCGTAGA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TCCTTTTGGGAGAAACTTTGAGTAATCCACATGCAATA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC

>NC_011729|35|33|4019765-4021254|CRISPRCasFinder
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GTGGCGGGGGCCCAGGATAACGTTCCCCCCTTATA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TTGCTGCAATCCCAAAGGAAAACCAAAGGGGGTTTTCCT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CAAAATTTTGGGCGAAACCTTGGACGCTTTTAATTG
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AATCTTGACCAAGAGAGCGGAAAGCCCAATTCCAAACC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAGGCTGCCGATCCGGTTTTGCAATAAACTGAGTTCGC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GTGATTCCCAAGGCTGTCCAGATCCCTGGACCTA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AAAAACATCTCCGTCTTTAAATACGGATGTTTTTT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TCCCCTCCTAAGTGGGATAAAATTAAGCATGAAGCATGGTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CCCCTCTTTGATTCTGCAATGCAGAGAGGATAACGTTCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAGGAAGGCCCCACCCATCAAAATTAATCATCTACGC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TACTTAATGCACCTATTGAATCTAGCTGTTCAGCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CTGAAGCGTACAAGAAAGTTTTGCCTTTCAATTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CCCGGATCGGGAGTTTGTAGCTCTCCGATAAACCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TGGGCTAAGATTTTAGACCGCAGACGGTCAAAAAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GCTTGTTCAACGTTTTCTTGCGCCCCTTTTAGGG
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	ATAACGTCAGCCTCTTGAGCGCCATTTCGCAAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AAACCCTGCACATATCAGCCAGCACGTCAGACCCCGGTGTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CTTATCTCTATGGCTATTGCTATCAATTCTTCGTAGA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TCCTTTTGGGAGAAACTTTGAGTAATCCACATGCAATA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAAATTTAATTGTCTTTTGAGGAGACTTACTTTGGTT
TCCTACCTATTGGGTTGAATAGGAATAACTGAAAAA

>NC_011729|35|9|4019765-4021254|CRT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GTGGCGGGGGCCCAGGATAACGTTCCCCCCTTATA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TTGCTGCAATCCCAAAGGAAAACCAAAGGGGGTTTTCCT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CAAAATTTTGGGCGAAACCTTGGACGCTTTTAATTG
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AATCTTGACCAAGAGAGCGGAAAGCCCAATTCCAAACC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAGGCTGCCGATCCGGTTTTGCAATAAACTGAGTTCGC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GTGATTCCCAAGGCTGTCCAGATCCCTGGACCTA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AAAAACATCTCCGTCTTTAAATACGGATGTTTTTT
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TCCCCTCCTAAGTGGGATAAAATTAAGCATGAAGCATGGTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CCCCTCTTTGATTCTGCAATGCAGAGAGGATAACGTTCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAGGAAGGCCCCACCCATCAAAATTAATCATCTACGC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TACTTAATGCACCTATTGAATCTAGCTGTTCAGCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CTGAAGCGTACAAGAAAGTTTTGCCTTTCAATTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CCCGGATCGGGAGTTTGTAGCTCTCCGATAAACCAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TGGGCTAAGATTTTAGACCGCAGACGGTCAAAAAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GCTTGTTCAACGTTTTCTTGCGCCCCTTTTAGGG
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	ATAACGTCAGCCTCTTGAGCGCCATTTCGCAAA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	AAACCCTGCACATATCAGCCAGCACGTCAGACCCCGGTGTC
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	CTTATCTCTATGGCTATTGCTATCAATTCTTCGTAGA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	TCCTTTTGGGAGAAACTTTGAGTAATCCACATGCAATA
CCCTACCTATTGGGTTGAATAGGAATTGTTGGAAAC	GAAATTTAATTGTCTTTTGAGGAGACTTACTTTGGTT
TCCTACCTATTGGGTTGAATAGGAATAACTGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_049858491.1\|4019256_4019667_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|253298
NC_011729.1\|WP_015955580.1\|4021555_4022308_-\|creatininase-family-protein	unknown	unknown	gnl\|CDD\|376872
NC_011729.1\|WP_015955588.1\|4031901_4034427_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224142
NC_011729.1\|WP_015955572.1\|4004294_4006922_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238504
NC_011729.1\|WP_015955581.1\|4022365_4023118_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011729.1\|WP_015955587.1\|4030873_4031740_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_011729.1\|WP_015955583.1\|4024644_4025313_+\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|223776
NC_011729.1\|WP_015955573.1\|4007096_4008008_-\|hemolysin-type-calcium-binding-protein	unknown	unknown	gnl\|CDD\|369942
NC_011729.1\|WP_015955582.1\|4023208_4024576_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_011729.1\|WP_015955570.1\|4001066_4002113_+\|DUF1611-domain-containing-protein	unknown	unknown	gnl\|CDD\|225902
NC_011729.1\|WP_015955585.1\|4028123_4029899_+\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_011729.1\|WP_015955576.1\|4014938_4016600_+\|peptidase-M14	unknown	unknown	gnl\|CDD\|349476
NC_011729.1\|WP_015955584.1\|4025753_4027535_+\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_011729.1\|WP_015955577.1\|4016766_4017315_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_011729.1\|WP_015955571.1\|4002176_4004162_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200463
NC_011729.1\|WP_015955578.1\|4017746_4019090_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NC_011729.1\|WP_015955589.1\|4034791_4035163_+\|photosystem-I-reaction-center-subunit-IV	unknown	unknown	gnl\|CDD\|367080
NC_011729.1\|WP_015955575.1\|4011343_4014838_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_011729.1\|WP_015955586.1\|4029996_4030884_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_011729.1\|WP_015955574.1\|4008379_4010806_-\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|277369

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_049858491.1\|4019256_4019667_-\|hypothetical-protein	gnl\|CDD\|253298	pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in cattle. The antigen has been shown to contain five distinct linear peptide sequences recognized by sporozoite-neutralising murine monoclonal antibodies.	7.06975e-05
NC_011729.1\|WP_015955580.1\|4021555_4022308_-\|creatininase-family-protein	gnl\|CDD\|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	1.57707e-80
NC_011729.1\|WP_015955588.1\|4031901_4034427_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|224142	COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	7.69995e-63
NC_011729.1\|WP_015955572.1\|4004294_4006922_+\|universal-stress-protein	gnl\|CDD\|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	1.13694e-136
NC_011729.1\|WP_015955581.1\|4022365_4023118_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.14717e-91
NC_011729.1\|WP_015955587.1\|4030873_4031740_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.71291e-81
NC_011729.1\|WP_015955583.1\|4024644_4025313_+\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|223776	COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport and metabolism].	1.47103e-49
NC_011729.1\|WP_015955573.1\|4007096_4008008_-\|hemolysin-type-calcium-binding-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	5.8658e-09
NC_011729.1\|WP_015955582.1\|4023208_4024576_+\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.30731e-44
NC_011729.1\|WP_015955570.1\|4001066_4002113_+\|DUF1611-domain-containing-protein	gnl\|CDD\|225902	COG3367, COG3367, Uncharacterized conserved protein [Function unknown].	6.51521e-105
NC_011729.1\|WP_015955585.1\|4028123_4029899_+\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	1.98248e-24
NC_011729.1\|WP_015955576.1\|4014938_4016600_+\|peptidase-M14	gnl\|CDD\|349476	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	2.74222e-167
NC_011729.1\|WP_015955584.1\|4025753_4027535_+\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	1.15637e-25
NC_011729.1\|WP_015955577.1\|4016766_4017315_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.47062e-46
NC_011729.1\|WP_015955571.1\|4002176_4004162_+\|alpha-amylase	gnl\|CDD\|200463	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase. Amylosucrase is a glucosyltransferase that catalyzes the transfer of a D-glucopyranosyl moiety from sucrose onto an acceptor molecule. When the acceptor is another saccharide, only alpha-1,4 linkages are produced. Unlike most amylopolysaccharide synthases, it does not require any alpha-D-glucosyl nucleoside diphosphate substrate. In the presence of glycogen it catalyzes the transfer of a D-glucose moiety onto a glycogen branch, but in its absence, it hydrolyzes sucrose and synthesizes polymers, smaller maltosaccharides, and sucrose isoforms. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_011729.1\|WP_015955578.1\|4017746_4019090_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.35561e-143
NC_011729.1\|WP_015955589.1\|4034791_4035163_+\|photosystem-I-reaction-center-subunit-IV	gnl\|CDD\|367080	pfam02427, PSI_PsaE, Photosystem I reaction centre subunit IV / PsaE. PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains.	9.67291e-40
NC_011729.1\|WP_015955575.1\|4011343_4014838_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.33651e-86
NC_011729.1\|WP_015955586.1\|4029996_4030884_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	9.91729e-104
NC_011729.1\|WP_015955574.1\|4008379_4010806_-\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|277369	cd08162, MPP_PhoA_N, Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.84521e-128

>NC_011729.1|WP_049858491.1|4019256_4019667_-|hypothetical-protein
MPSNSLPVKHPRNPTKESGFERDHRGRWRGGRGWGEGGVWGGWGVGGVGGVWGVGGVWGVGGVWGVGGVWGVGGVGGVGGVWGVGGVWGVGGVGGVGGVWGVGGVWGVGGVGGVWGVWGVWGVGGVWGVWGVWGVV
>NC_011729.1|WP_015955578.1|4017746_4019090_+|HlyC/CorC-family-transporter
MTNIALEILIVLLLIIANGIFSGSEIAVVSSRKIRLEQMASRGDRKARAALKLANSPNDFLSTVQIGITLIGILSGAVGGATLAQRLEPLINYIPLLSPYSEGISVAIVVTIITYLSLVIGELIPKRIALNNPEQIARSVAKPMRTLSKFTAPLVHLLSFSTDNILKLLGFRASQEPSITEEEIRVLIKQATQSGMFEESEQEMVEGVFRLSDRPIKALMTPRFEIVWLNSEASLEEIQQQILASSHSRFLVARGTLDECLGFLRSSDFLSARLAGEAINLLEMIQPPLYIPENTKALKVLEQFKVSGIHIGVIIDEYGSIDGIVTLNDVMEAIVGDISTSENLEEPRIIQREDGSWLLDGLLSVDEIKNLFSKSSLPHEDSGHYHTLGGFVINFLGHIPHSGEHFQWEGLRFEVMDMDGTRVDKVMVSSVEIEPESSLEQIDHLDL
>NC_011729.1|WP_015955577.1|4016766_4017315_-|NAD(P)H-dependent-oxidoreductase
MVKIVGINGSLRSGSYSSQALEIAVSRVQALGAEVEILDLREMTLPFCNGEDEYPTYPDVEKLRRSVKEADGLILVTPEYHGSVSGVIKNALDLMSFEHLEGKVAGLISVLGGQSNSNALNDLRVIIRWVHGWVIPEQIAVGQAWKVFNEEGKLLDEKLSKRFDDFAQSLVDNTCKLRGVSV
>NC_011729.1|WP_015955576.1|4014938_4016600_+|peptidase-M14
MFDFSHYYTYDEIVTFLDQMAEAYPHLIKLEIIGQSYAKRDIWLATLTAQNTGLPLEKPGFWIDGNTHAGEVTGSAIALYIIYHLLTQYKSDPQVTRLLDHYTVYVLPRIAVDGAEKYLTTPYRLRSSIRPYPHSDQQDGLYPEDINGDGLILQMRIKDECGGWKVAPEDPRIMIRREPEEFGGTYYTVLTEGLIHNYDGYNFKVAPTLEGLDFNRNYPAQWVPEGEQEGAGYFPFSEPETRAEAEFWSQHPNINGFITYHTSGAVILRPYSTHPDEHFLHEDLEIYQLIGEKGTSLTGYNCVSVYHDFRYHPKEVTNGAMDDYGYEHFGWFGFTVELWDAPTEAGIQKKDYLQWSSRHPLSDDLKLMGWNDEKLAGKGFINWQPFHHPQLGEVEIGGWNFKQMWQNAPVEYLPELCEKQTRFAIAHALMSPRLAIVRTDLTHHGGDVYHLVLQLENQGFLPTYTSEKALEKKIVKPIKVSLFLAEGTTLISGEKEQEIGHLEGRSNKAFSNLAKGYDYRCTVEWVIKGTSGSPIEIIAKGERSGTVKTQLTL
>NC_011729.1|WP_015955575.1|4011343_4014838_+|hypothetical-protein
MTTATPLDYHYRVGGSLAHNHPTYVERQADTELLSALLEGKFCYVFNCRQMGKSSLRVRTMHQLQLKGMSCASVDITSLGSDITREQWYCGIITQLFLGFNLVGKLNLKVWLREREELSPVQKLGQFIEEVLFVKCPGEKIFIFIDEIDKVLSLKFSLDDFFSFIRFCYNQRAENQTYNRITFALFGVATPDDLIREKTQTSFNIGQPIELTGFTPEEVQPLEMGFIDQADRPSSVLKEILYWSGGQPFLTQKICQLLINFSSFIPEGEEQKTVKKIVDEQVINNWESLDEPVHLKTIRDRLLRNEQRAGRLLGLYQSILKQGYIEADDSPEQAELRLSGLVVKRDGRLQVYNPIYQAVFNPEWVNKQLEKLRPYSEAIAAWEASKFEDESRLLRGQALKDALAWAMGKGLSNLDYQFLTASQKLDKREAEINLETQKKANEILTTANRKAKKLFQIGTTFLIISLLTAAGIAKNASDRQQEAQIGSQLQRRADTAWRQFEIDEIEGLLSAMQAGQDLKNTVRNGRLLKDYPATSPVITLEQILDQITEKNRFKGHEDIVYSASLSPDGKLIASASKDGTVKLWNQVGEQLAILRGHEGAIYGVSFSPDGQYIATASSDETAKLWSSDGKEIATLKGHQGSVYNVTFSPDGQYIATTSRDNTARLWNKKGQQIAVLKGHTQSVDDISFNAKGDRIATASRDGTVKLWDIKGILLGNVRSDDVAFYSVDFSPDGKIAIADSEGVVKVWDEKGNLMVTIKGHQDFINRVRFSPNGKWIATASSDGVAKLWNLQGKEFITFKGHQEAIYDIAWSSDGQELVTASGDGTVKLWEINDQNLTRNSDLQRRITSVSFSPNGELLVRSSINGEIELSDLEGNLKQQFDSGLDWISDLKFSADSQKIVAVSRGGMIRLWERKGRVLKEWPEKYNNFSSVALSQDGKKLATADREGQVWIWDLTNNVPKLLTKFSAHKDVINSISFSPDGEEIITASSDDSVKLWDSQGNLKTQFKGHKEAVYWVSFSNDGNYIGTASKDGTARLWNREGETIKVLQGDLFPVYRVSFSPNGKYIATGSSDGTARLWDNQGNLRAEFKGHQDSIYGITFSPDSKTVTTVSRDGIVRQWQVQAEFARLESLLKQGCQWLGDYLVTYPQEKEKLTACQKNNIGNK
>NC_011729.1|WP_015955574.1|4008379_4010806_-|bifunctional-metallophosphatase/5'-nucleotidase
MTNNVTSLNSDQTILSSAFTLQLLHASDFEAAIPALEDAPRFSAVLNALRNQDNDGDGQADYANTLFLSSGDNYIPGVWSFASNEVYGSQGRADIAILNELGLQASAFGNHEFDLGTGVVANILAPDAEDGYGGAQFPYLSANLDFSTDSTLDDFVTADGQPASTITGKIAKSTVITVNGEQIGIVGATTPILRSISSPGGALVTPQGFPQNPTDADIQALAAIIQTSVDQLLANNPQMNKVILLSHMQQLSIEEALAGKLRNVDIIVAGGSHSRLLDQSDRLRAGDTTQGTYPIFKTDAQGNPIAIVNTDANYKYVGRLVIDFDENGLIIPGSYNAQISGAYATDQQGVAAVGGTPDPEVVAITNALQQEIAQLEGNFFGITNQYLNGNRAGTGVDGVRNQETNLGNLTADANLAIAQDFDPNTVISLKNGGGIRNSIGQIEVIGTNEPERLPPAGNDLTAKPDGGISQLDIANALSFNNGLSLVTLTAQELLDILEYGIAASTNAASSSQGRFPQVGGLAFSFDLDLPAGDRIQSLAIKNSQGNTVDIVVSNGELVGNPQRTFRMVTLNFLADGGDGYTIPNRDRVDLAQSEDAPRTGTATFAPDGSEQDALAEYLNENFLQTPFAQEDTSRELDQRIQNLDFRQDTVNDNLIAPQLNAPVYRFYNPITRGYFFTSNIGERDNLLANPQSGYNFEGVAFNASNSSGNNLVAVYRFYNPIIRGHFFTANLGERDNLLANPQFSYNFQGVGFYAYGAEASLGADVYRFYNPISQQHFLTANLGERANLLANPQFGYNFQGVGFEATPV
>NC_011729.1|WP_015955573.1|4007096_4008008_-|hemolysin-type-calcium-binding-protein
MCYFCSALNSDLYSSNADLSIGQILIGGTDNDMMIGTDGFDKIYGQAGDDTIDGGLGDDYLRGNDGADQFVLRRGNGRDTIFDFEDNKDKFLLKDGLQYEDLTISQQYGRTVISVTDTGEVLANLLYEVDVSQIEREDFVVFSEEIKYNIINDHNQSQSILLEVENFNLDGYEPEENNKVSGGQLAKLNSQVSHGIATTEFNGLPGFYDIIVGYFDENDGAATLQLEVNDTTVDSWILDESLLGAAANANTFRTRIIEDVQLNPSDLISVVGIRERAEFARVDYIELIANAPTEVGLGVGAQL
>NC_011729.1|WP_015955572.1|4004294_4006922_+|universal-stress-protein
MNIYLPIKRLRGWFKARRFGRSSVDTRYAMLEACLIGILSAVAALVLKQGVGWLGGWRLSLTRTFGALWILPLGGLILGLLAGWVIEILSPAAAGGGIPQVKAALARFPVPLSLRVALAKLIGAILVLGAGLTLGRRAPTVHIGAALAAQLSQWLPTSPEHRRQMIAAGAASGLAAGFGTPIAGVLFVIEELMRDVSGLTLETAIIASFTGAVVSLLLESTGPIIPAPLNITFSAREIPLYLLLGFLAGILGALFNAGILFCMRVQKQLRLSIPWRIGLVCMISGAVIAVLPPFFRDNSGLREFLITGELGWRNILLALIAHFFLTILAYSSSAPGGLFAPALVMGSALGYLVGDLGELLTGSGAATTYALAGMGGFFTAVVRAPVTAIVIVFELRANFNIVLPLMITCAVSYLVAENVFSRSIYEHLLDASGIHLTEEIPVNDFLSKLKASDVMQSQVETLDSYLSLEAVLQAMSISRHRGFPVVEEGKLVGIVTQSDLSNLGDRSEELTLRQIMTPKPITVQPETSLSDVLYLLNRYQLSRLPVTEGHKLVGIITRTDIIQAEVKQLGGGTMQGSKPAPSYVTYQTRSPALGNGRILLPLSDGEMAGTLLQIAAAIARHRNYEIECLQVIKVPRHQFPSEARIDIHHSRKLMQRMERLARHLNVPVHTQIRIAQDTAQSIIETIQERHINLMLMSWKGGGDTQGAIFGNVTDTLIHKAPCDLMLVKLGASPTAYPHNLEHNATWLVPMAGGPNAQRAIELLPSLTTLYANPNAPELWLCKVYPPTELEPNSQALEEAAQTLTEKLNKSIIPISIRSHSVADALIHLAQAEVCDLIILGASREGLLQQAIHGNIPDAIASGVDSTVIVVRGAID
>NC_011729.1|WP_015955571.1|4002176_4004162_+|alpha-amylase
MQNVLQMSGEARSIFEAIKERQFPKLVGRCAPRDADIFWLRFERYFEDFYHPLTELYGDRPDYTQQIEALFEQMVEAYIARPEPLRLLDLEREFTPDWFEHSNMIGYVCYGDLFAGTLQGVREKVSYLEELGITYLHLMSILKPRPAPNDGGYALMDYQTIDPELGTMEDLRELATDLREKGISLCVDLVLNHTAKEHEWAQRAMAGEEKYLEYYYTFSDRTLPDVYEKTLPEIFPDDAPGNFTWYPEMAGSGRWVWTTFMEYQWDLNYTNINVFREMMDIMFFLVNQGVDILRLDAAPFIWKRLETNCQNQPEVFKLIQVFRGLMRVIAPAVIFKAEAIVPPNLLQQYIGIKATTGKQCKLAYNNQLMVDLWSGLATHKATLLSYVSHKHAPLLFIGATTVNYIRNHDDIGWGMGDEDLHDIGEEPFLHRQFLNQFYTGNFPGSFAKGELFQFNPVTKDARISGTTSSLAGLEVALENHDEPAIDLAIRRLLLLHSIALFARGIPLIYMGDEVGLLNDYTYINDPNKAKDSRWLHRPKMDWSKVEKRHDPDSIEGRIYQGLLHLIKIRKSTSLLHSFAFLHPMWTDNDHVWAISHKRPEGSILMLANFDDHWQSVNTNIIYSNGFIHNVRNLLAPGVSLNIAEGRLYLAPYECVWLVGDE
>NC_011729.1|WP_015955570.1|4001066_4002113_+|DUF1611-domain-containing-protein
MTNNQQKLTSQHRVVILLHEGIKGTHGKTGLAYLRYGKSPIVAVIDSESADQSLPQLTKIDKKIPIVKNIEDALTYHPDVLLIGIAPSGGILPDAWLEEVKKAVKAGVSVVNGLHTAIAPQFNSLQENQWIWDIRQEPPGLIVGKARARSLSCRRMLTVGTDMSVGKMSTSLEINAAAQRRGIKSKFLATGQGGIMIEGDGIPLDAIRVDYAAGAVEQMVLKWGNEYDLLLVEGQGSLVHPGSTATLPLIRGSQPTDLILVHRAGQKHIQSLPQILIPPLSDVVQLYNQVASVYGTFGDVRVKAIALNTFHLDEQSAKDAIAQVETETGLPCTDVVRFGADSLLEKVY
>NC_011729.1|WP_015955580.1|4021555_4022308_-|creatininase-family-protein
MLLQLSTWPEVETYLQESTGIIIPIGSTEQHGPIGLIGTDAICAEVIAKGVGESTSAMVSPTLNVGMALHHTAFPGTISLRPSTLIQVVLDYITCLAKSGFTHFFFINGHGGNIATLKAAFSETYNHLAHLNIPGHEEIKCQVANWFMCRSVYQLAKELYGNQEGSHATPSEVAVTQFAYPNMIKTAALNPEVASGFPIYGAVNFRRHYPDGRMGSNPALATPEHGQQFYDLAVKELSNSYLEFIGKKQE
>NC_011729.1|WP_015955581.1|4022365_4023118_+|response-regulator-transcription-factor
MLSLDVPQLSSNSDLVQTHRILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLMLPQVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRALLRRQSFSTISSNPVRKFKDISLYTQECRVLVRGDEINLSPKEFRLLELFMSYPRRVWSREQLIEQIWGPDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRFG
>NC_011729.1|WP_015955582.1|4023208_4024576_+|PAS-domain-containing-protein
MVIIAFILGILLGIGLACWDRYRFNRQLKRMISTLSETSELVTSLPLLSLIRRELTYLYQQRQELQKTIDDQKSIFDLAPVGYLLLDGDNQLLWCNQAARALLCIDRWQPGHIRLLLELVRSYELDQLIEQTRSSQIPQVKEWTFYPSQYATNSTIAEEQTTKLYKTSIALKASSFPLPKGEVGVFLENQQPLVELSRSRDRAFSDLTHELRTPLTSISLLAEALQKRLQNPERRWVDQMLKEIERLMRLVQDWLEISQLQEDPSQSLNYQTLDLKALIDSAWQSLTPLATQKQITLHYEGPQHLSLQGDGERLTQVFVNLFDNSIKHSIAQSSIRVDVTSPPSYSTQEFSPNLNQEIIIDIIDCGEGFLESDLPYVFDRLYRGEPSRARKSSDSDLSRHGSGLGLAIVKQIVQAHGGTIQAKNHPDTRGGWIEIKLFLEKPDRGMVLLDSPEIN
>NC_011729.1|WP_015955583.1|4024644_4025313_+|phosphate-signaling-complex-protein-PhoU
MNLSTHTNHPERTYFERCLKRLEQDVLRMGTLVEESFRLSHQCLFERNLEVVPKIKDNDKQIDRYYRQIELDCATLMTLQAPVAQDLRLLSAFMQLIRDLERIGDYGKDLGEIAMKLFAYPPHSCMKEIESMSLHAQLMLATSLVALADLDGDAGSKVKQLDDTVDDAYDRLYETLAYQRDIKGVVEPILLMGLVIRHLERMADHATNIAQRVSYIVTGHRN
>NC_011729.1|WP_015955584.1|4025753_4027535_+|iron-uptake-porin
MSRKWWNLIKTTPLLVGASVLTAQGAVANPEVPETQVNSFSLPSNEQLLAQAVPGTPGSPAPEATEILQMMQRSREGKRINTQVYDKPMSQVNNVNQLRDVEPTAWAYEALRSLVERYGCIVGYPDRTFRGDRALTRWEFAAGLNACLNVLERLIQEGVAVVREDLETLKRLADEFAAELAALGARIDNLESRVAFLEDHQFSTTTKLNGEVIFAYANAFSDDYAFDSTFEDRSLRQQDALERGRRVGREGVFVDRVRLNFDASFSGKDRLRVRVESNNTPNFTSATGSAMSRLGFDSGTDNDTFVTDLYYRFSPFRNFTAWVGTTNMGLEDVFNPGNPYLEPSGTGALSRFVRRNPLVFRGPDGNGVGARYKFSDFISVTALYLADENDARSPLPGQGVFNGDFSAGVQAVITPFDRFNINLTYLHSYFSEGSVNLSGSTGSRITQDPSTAFLGLGTIPSAWNRDSVGAQIDWQALDWLHFTLWGGYAYAEAKNPNYDSNGDIWTWNAIVNFVDILKEGAVLSFSGGMPPRITGVNNGPDDEDTSIIVEAQYQYPISDNILITPGFYVILDPNHFERNDDIWVGVLRTTFKF
>NC_011729.1|WP_015955585.1|4028123_4029899_+|iron-uptake-porin
MSQKWWNLIKTTPLLVGASVLTAQGAVANPEVPETQVNSFSLPSNEQLLAQAVPGTPGSPAPEATEILQMMQRSREGKRINTQVYDKPMSQVNNVNQLRDVEPTAWAYEALRSLVERYGCIVGYPDRTFRGDRALTRWEFAAGLNACLNVLERLIQEGVAVVREDLETLKRLADEFAAELAALGARIDNLESRVAFLEDHQFSTTTKLNGEVIFALANAWTDDFSIPDSAPRSQASQVAFESRPVGRQTVLTDRVRLNFDASFTGTDRLRVRLESGTTPNFNAAVGSNMARLGFDIQTDNDMDVSDLYYRFRPFNNFTAWVGTRAMDLDDVFNVGNPYLEASGTGALSRFVRRNPLVFRGPEGNGVGARYKFSDFISVTALYLADQDDATSPLPGQGVFNGNFSTGVQAVITPFDRFNINLTYLHAYFGEGSVNLSGSTGSRITQDPSTAFLARGTEASAWTRDSVGAQVDWQALDWLHFTLWGGYAYAETKNPDYDSSGDIWTWNAIVNFVDLFKEGAVLSVSGGMPPRITGVDNGPDDIDTSIILEAQYQYPLSDNILLTPGFYVVLDPNHYDRNDDIWVGVLRTTFKF
>NC_011729.1|WP_015955586.1|4029996_4030884_+|ABC-transporter-permease
MTFWQEQHHSVSNLETRQRVNFLILFSPAILFLVIFFVLPLVIVLIYSFLERGIYGGVNWSFTFSNYQRLARGIYWGILGRSCWLAFLTTVACLVMGYPLAFFIATRPQPWRNILLLLVIIPFWTNFLVRTYAWMVLLRTEGVINVALQSLHLIDKPLTLLFTPFAVTVGLIYGYLPFMILPLYATIERFNFSLIEAAQDLGANDWQTFWRVLLPLTRRGIIAGSALVFVPSVGAFITPDLLGGAKTMMIGNLIQNQFLKARDWPFGSTLSILMMAIVLIPILIYLTRVEQNHEN
>NC_011729.1|WP_015955587.1|4030873_4031740_+|ABC-transporter-permease
MKTEKSQVDLIIRDLGKFGLWLNGILGYIFLYLPIIILIIYSFNSSRFNAVWRGFTLDWYRNLFSGITDGRAQITDVMIWDALKNSLLVAIISTLIATLLGTMVALALERFEVRGRTAIESLIFLPIIIPDIAMGISLLVFFSLCFQLLESLTGIRLVLGLPTVIIGHIAFNISFVTVTVRGRIAELEPSLEEAAWDLGANEWQTLQRIILPLIAPGILSAALLAFTLSLDDFVITFFTTGVGVTTLPLYVYGMIKFSVTPAINAISTLIVLVSFLLVASSLALQKRD
>NC_011729.1|WP_015955588.1|4031901_4034427_+|sigma-54-interacting-transcriptional-regulator
MSASGIVTWLQERTALNLCPQDLLEAIAAHLESRTIPIYQNLVNEDSTPDGLYILRSGYLESHSRRLTPLGLLPGSLINLQALILDQRVQETIITLSESEFWFINATDFKKIIAQYPQIPQLFSQQLAKTVEQLSSQLNFEQERQTLLRPYLVSKAKRGVIGKSRYAVRLRTQIKQASQTREPVLIFGEPGLEKDNIAALIHFGSPSRKEPIIKIDCSKIQSSGADLFGRTGGKMGLIEAVDRGTLILNNIQELAPELNSAIRELIQDKTYTPVSRPGEFIAPKKASQARIIILSEQTRPEIDSLVKTIIKVPPLRVRKADIDEWLNYYLTLICRAKGINKPQVTPEAIRRLQAYDFPNNLRELESLAQRAIIQLQGTNTITEEIIWPSDGKKKQFRVNLLNFYPHLRRFLRSPWYPDKINYGFTVTVFALVVAILFLGPQTRGENFALNLFWAWWWPLVLIGFPFVGRLWCAICPFMIYGEITQKLSLWLFPRSLKKWPRKTAEQWGGWFLFGLFALILIWEELWNLENTAYLSACLLLLITAGAMIFSAIFERRFWCRYLCPIGGMNGMFAKLSITELRAQQGTCSAECTTYQCYKGGPQKGEGQATDGCPLYSHPAQLEDNRDCVLCMTCLKACPHRSVEFNLRPPGIELWTSHSPRSYEVALMFLLLGAVFLHHLPQLQTLLSTQFNLTQFWTHLGLSVAVLTLPAMIPIVAYKLVEISFNPMSALKPRPFIELAYGYLPLVLAGNLAHYLRLGLGEAGKILPVGFATFGLNGSMMPILVAHPAVIAFLQGTVLLLGMILSIILTQKIARKPFTSLLFQHFSTLFLGICLWKITVGY
>NC_011729.1|WP_015955589.1|4034791_4035163_+|photosystem-I-reaction-center-subunit-IV
MVQRGSKVRILRKESYWYNDIGVVASVDKSGILYPVIVRFDKVNYAGVTTNNFGTHEVEEVEGPSKKQPTAKPKPGDTPLDERQRMTGQAQGGADVRPGADAEAPGSNQPRVAGDPNQGTDQR

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Crispr_ID: NC_011729_36

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_36

4108705-4108815

Orphan

N:A

Consensus_repeat	Method
AGTATTAGACTAATTGTAGGGTGGGCATTGCCCACCTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_36

>merge|NC_011729|36|4108705-4108815|CRISPRCasFinder
AGTATTAGACTAATTGTAGGGTGGGCATTGCCCACCTTATTTAGTGAACAGTGGACAGTTAACAGTAGTCGAGTATTAGACTAATTGTAGGGTGGGCATTGCCCACCTTAT

>NC_011729|36|34|4108705-4108815|CRISPRCasFinder
AGTATTAGACTAATTGTAGGGTGGGCATTGCCCACCTTAT	TTAGTGAACAGTGGACAGTTAACAGTAGTCG
AGTATTAGACTAATTGTAGGGTGGGCATTGCCCACCTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_041238323.1\|4118981_4119344_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955653.1\|4110057_4111149_+\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|333905
NC_011729.1\|WP_015955649.1\|4101273_4105062_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|238923
NC_011729.1\|WP_015955645.1\|4095861_4097235_-\|proton-extrusion-protein-PcxA	unknown	unknown	gnl\|CDD\|235046
NC_011729.1\|WP_015955655.1\|4111988_4112576_-\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|368789
NC_011729.1\|WP_015955643.1\|4095005_4095335_+\|DUF760-domain-containing-protein	unknown	unknown	gnl\|CDD\|368489
NC_011729.1\|WP_015955658.1\|4115257_4117600_-\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NC_011729.1\|WP_015955657.1\|4115014_4115254_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NC_011729.1\|WP_049858496.1\|4118412_4118673_-\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NC_011729.1\|WP_015955647.1\|4099812_4100781_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955651.1\|4108927_4109659_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955642.1\|4094431_4094914_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|213521
NC_011729.1\|WP_015955646.1\|4097348_4099538_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015955648.1\|4100994_4101267_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_011729.1\|WP_049858495.1\|4117980_4118241_-\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NC_011729.1\|WP_041237797.1\|4092413_4093256_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NC_011729.1\|WP_015955641.1\|4093344_4094250_+\|DUF3365-domain-containing-protein	unknown	unknown	gnl\|CDD\|378734
NC_011729.1\|WP_015955656.1\|4112811_4114824_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NC_011729.1\|WP_015955650.1\|4105974_4108638_+\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NC_011729.1\|WP_015955654.1\|4111211_4111949_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_041237797.1\|4092413_4093256_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	5.77742e-27
NC_011729.1\|WP_015955649.1\|4101273_4105062_-\|diguanylate-cyclase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.18873e-114
NC_011729.1\|WP_015955645.1\|4095861_4097235_-\|proton-extrusion-protein-PcxA	gnl\|CDD\|235046	PRK02507, PRK02507, proton extrusion protein PcxA; Provisional.	0
NC_011729.1\|WP_015955658.1\|4115257_4117600_-\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NC_011729.1\|WP_015955643.1\|4095005_4095335_+\|DUF760-domain-containing-protein	gnl\|CDD\|368489	pfam05542, DUF760, Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins.	1.95952e-33
NC_011729.1\|WP_049858496.1\|4118412_4118673_-\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	5.63107e-17
NC_011729.1\|WP_015955657.1\|4115014_4115254_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	1.21227e-32
NC_011729.1\|WP_015955655.1\|4111988_4112576_-\|chorismate-binding-protein	gnl\|CDD\|368789	pfam06206, CpeT, CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.	3.1656e-100
NC_011729.1\|WP_015955642.1\|4094431_4094914_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|213521	TIGR00281, Segregation_and_condensation_protein_B, segregation and condensation protein B. Shown to be required for chromosome segregation and condensation in B. subtilis. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	8.21976e-45
NC_011729.1\|WP_015955654.1\|4111211_4111949_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.04903e-14
NC_011729.1\|WP_015955648.1\|4100994_4101267_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.01031e-22
NC_011729.1\|WP_049858495.1\|4117980_4118241_-\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	2.2256e-17
NC_011729.1\|WP_015955653.1\|4110057_4111149_+\|isocitrate-dehydrogenase	gnl\|CDD\|333905	pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.	2.18174e-48
NC_011729.1\|WP_015955641.1\|4093344_4094250_+\|DUF3365-domain-containing-protein	gnl\|CDD\|378734	pfam11845, DUF3365, Protein of unknown function (DUF3365). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.	2.98788e-56
NC_011729.1\|WP_015955656.1\|4112811_4114824_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	0
NC_011729.1\|WP_015955650.1\|4105974_4108638_+\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0

>NC_011729.1|WP_015955650.1|4105974_4108638_+|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MKVTNLEELEALIQRTKAAQEIYATYTQEQVDEIFKKAALAANAARIPLAKMAVAETGMGVIEDKVIKNHFASEIIYNKYKSDKTCGVIEEDKSFGFQKIAEPVGLVAGIVPTTNPTATAIFKSLITLKTRNGIIFSPHPRAKTCTIEAARIVLEAAIEAGAPEHLIGWIDEPSVELSQRLMQHPNISLILATGGPGMVKAAYSSGRPSLGVGAGNTPALIDDTAHIKMAVSSIILSKTFDNGMICASEQSVVVLDRIYDIVKEEFRERGAYFLTPEEEEKLGKVLIVDGHINGEVVGQSVQKLAELGGFAVPENTRVLIAEVEEIGYDEPFAYEKLSPVLGMYRATDFTDGLNKAEQLVEFAGRGHTAVLYTSPSNKDHIRQFEETIETARVLINTPSSQGAIGDIYNFRLDPSLTLGCGTWGGNSISENVEPRHLLNIKTVAERRENMLWFRVPPKVYFKYGALPIAIRELAGKQRAFIVTDKPLYNLGLTKGLEEVLEEIGMRYNVFYDVEPDPSLETVNRGLGVMREFNPDVIIAIGGGSPMDAAKIMWLLYEHPEIEFEGLAMRFMDIRKRVYDLPPLGQKAILVAVPTTSGTGSEVTPFAVVTDRRKNIKYPLADYALTPTMAVVDPELVLQMPKSLTAYGGLDALTHATEAFVSVLASEFTTGLCLEAIRLIFKYLPSAYHNGAKDYKAREKVHYAATMAGMAFANSFLGICHSMAHQLGAVFHVPHGLANAMMISHVIRYNATDAPFKQATFSQYKYPNAIWRYARIADYLGLGGATKEDKVDRLIEVIEDLKRRLDVPMALKDVIHVTEAEFLAKVDEIADQAFDDQCTGSNPRYPLIKDLRELLIKAYYGESPVTSNGNGRQYLTLEDVKTDPQPIA
>NC_011729.1|WP_015955649.1|4101273_4105062_-|diguanylate-cyclase
MNETNSNQEQLLLKITNLIHHNLDFTDTIQKITQAAQDFLKIDRVTIYQFAQDGSGEVIAESTTPTRLPSLLGLHFPASDIPSKSLEQFAKLRSSSIIDVSAKRKTINSFNEYSDGKSNTLYIPTYSTVDPCHLQYLLAMGVLSSLSMPIFYWDQLWGLLIAHHSEPRRFSREELWTIELWCRQISLALAQNTLVSQFQKQKQQEHFIETINRLIDNQSNLSECWQKILLETLKTLQADGARLYIVSELTGQGDQLYTYGSQPLFPQLEEQPQWQQLMKGKLSQPDDSSYPSTRPFTCTLAQLSADPQYHLLSKAFGNQSIQSFLFIPLRSRSQWVGCLTLFRQEQEWETLWAGQQKLDQHNSTPRQSFSPWCEIQRGVREWSTDELKLAEVLGLHLYMIVIQQRLTRLIRHQASYDVITQLPNGIIFNHRLSLALVDAVNQGNMLGVVILDLNQFKRINDSLGHGVGDFLLTKVRDRLQNALDTYSIFNPLLARWHGARFIILLSKLSYSDESVMVCQKLLNDFQEPFYVQSQAIYLGASLGIALAPYDGDTAEILLKNAESAMYEAKKQGKNTYQIYRPGSDHDKNKLILEADLRKAIERNEFVLHYQPQIDLNTRKLIGVEALIRWQHPSLGMVSPALFIPLAEETGLICPLGEWVLRTACHQYRIWQKAGFPKIQMAVNLSAFQLQQDDIVARIAMILKETGMTPSDLELEITETTVMENLEQMTAILEQLKQMGIKIAIDDFGTGYSSLNVLKHLPVDTLKIDKSFVQDITLDSNDAKLCQGIIMLGKAFELDVLAEGVETFTQLEFLRSLNCDRAQGYLISRPLAPDALIELLLKAQTLIPSPSSQEVNLLHSSSPSWPNSIIPNSPHQLDYHPPMIETGSPYIKIESFEAKNSQNLQEYLYLKQEIQQQANRERIIMDVAQKIRASLNLDDILNTTVSEIRHLLNTDRVFIYRFDENWVGKVVVESVACPEFSILGEWIDEPCFRDQYVKYYRQGRIKAIEDIAQIELTPCHRELLNRYQVKANLVLPIVYQDKLWGLLIAHDCRKPRKWQDHEITLLSQIAIGAAIAIHQGELYQQLESANLELKKLSCLDGLTQVANRHRFDMYLDQEWRRLMRSQQFLSLILCDVDHFKGYNDTYGHLAGDQCLQQVAQVIKNAVGRPADLVARYGGEEFAIILPDTPLRGALYVAEQIRQQVQYLTIPHPQSTHQWVTLSSGVASFIPSAALSPKALINAADEALYQAKANGRNQVVFSPS
>NC_011729.1|WP_015955648.1|4100994_4101267_+|response-regulator-transcription-factor
MASSKFETPASLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQWGKVCLNDINCCTLPIPSPQET
>NC_011729.1|WP_015955647.1|4099812_4100781_+|hypothetical-protein
MSQTRSPLRIGNVISAALRLYRDNLKTYFGISFVANLWLSVPFLGIIVVSALAILLAVILGDGNTENYGVLFFVLILILIPLWIFLAFYCTAKFLVNIVVISRLAFRQLINKPETATQARALLKPNLWKFWLIQFLVGLILSAVNFVWQIIQYSFFILPASQVDNPSLQIALQLLGYLVYLIVLAWVSARFFLPEICFALENNLKVENTLSRSWQLTKGFGWQIVFILIVAGLITMPVYLLSAIPIISASIYAITGIISDLPPWLILTIMGYSILGAILIFIVLNIAFLPFWQAIKGVIYYDLRSRREGLNLEATELTDSDL
>NC_011729.1|WP_015955646.1|4097348_4099538_+|hypothetical-protein
MSLLPIWFIGTTRSGKTTHLVKQFCLWIQEKALLAQKSEPSQKQPQQLASAMLIFAANDDNRSILRDHLSLAVSGRFPINCKTPLGFITDEVMLFWPLLFETLNLKAQFPIRLRPETEQELATRLWRPHLEQTFLQQAGVSEYRFVRRTLDLMQLAGAAGIAVEDIPVMLEQGLSETLIRSQWPGVIRPEQLADNFVSSAQEVHEAHRIGQLILEWREWCLERGLLSYGLIYELYWRYLLPNPNYQGHLISRYQAIFADDVDDYPAIARELFDFLLAQGAHGVFTYNPDGQVRLGLGADPNYLAELASSCEIIDLSPKSGLASQIGETVIEMVTEPLYINSLPEEIQSLQTTSRAQMLRKTAEVIIDLIKKEDANPSDIAVIAPGLDEIARYALREILTTAGIPVEPLNEQRPLISSPLVRALLTLLGLVYRGLGRLVLRDDVAEMLVILSCQSKPGETLADKKLVPEIDPVRAGLIADYCYHIDPEKPALLPVETFPRWDRLGNRATAAYGMIRDWIEQTQILLQQQRLTSPILVLDRGIKQFISKGNYLAYDQMSELRELMETAQHFWEIDRRVRQYEPISDLPHHAISEFIQLLRRGTITANPRPLRYFGNKPPAVTLSNIFQYRSLRSFHRWQFWLDAGSMLWEKGGSATLFAAPLFLREWTGRSLTSEEELEMDQARLRRILKDLLGRVGEGVFLCHSDLGVTGTEHAGPLLTLVHSSRELIYN
>NC_011729.1|WP_015955645.1|4095861_4097235_-|proton-extrusion-protein-PcxA
MKLSRIVRGANQWLSKTPERALDQAYRAALKIKELEDKHFQGKKVSPDTAQYGDSVMTYFEAELQGYLQTIKVRLGVFKTSRLFTSLSEPTHPRDERIALEQDSHGNRLLQKLKFIDDVISKYKTNEIVTAHSSDNGVIRGSELTPLNQQQVVIEANGKVPPPKKTNPQPAKKLTNLTVDEPKNKLDSATDKTGVLPRSFLNTINRIKQEIDPKSEETEEAVLKRFRTSRYKTAISIKFILLLIIVPLLTHQLTKTFFLTPVVEHYFSQHEQVVFINKDLEEEAFVELRSFEEALHFKSLIGIIPKLTQEEIEQEVRLKAEEISESYRLEGINAISNVFADIFSLIAFGVVIATSRKEIEIVKSFLDGILYSLSDSAKAFLIILFTDMFVGFHSPHGWEVILEGVARHFGLPENRDFNFLFIATFPVILDTVLKYWIFRYLNRISPSAVATYRNMNE
>NC_011729.1|WP_015955643.1|4095005_4095335_+|DUF760-domain-containing-protein
MVFNFDFLASDPDEQDNNGLMEYLQQQNPEILARVAGSASPEIKEIISQNVQGLVGMLPTGDFNVQITTDRENLANLLASAMMTGYFLGQMEQRRNLDVNLSKTDSPNS
>NC_011729.1|WP_015955642.1|4094431_4094914_+|SMC-Scp-complex-subunit-ScpB
MQEVRLATKVEAILYLKGQPLSLAEIAEYAHCDLSQVQEAIIELMSDYAHRDSALEVVETPKGYSLQLRTCFEHLMTHLVPAELGTGALRTLAAIALKTPILQTDLINLRGSSAYQQVQELVELGFVRKRRQSEGRSYWLEVTDKFHQYFEIDQLSQLQD
>NC_011729.1|WP_015955641.1|4093344_4094250_+|DUF3365-domain-containing-protein
MLRNLKLGAKLNLLLLSIFIVIVFLSGLLISKILEKNAEQVVTDKAFLLIETMGAVRNYTSKQINPELAPRLETEDQFIPQTVPGYSAREVFEDLRTRPDYRDFFYKEATLNPTNLRDKADEFESKIVEEFRTNNKLKEKVGFRSLPGGDIFYIARPIAITEESCLRCHSTPEVAPKSQLATYGAQNGFNWQMNEIVGAKMVSVPASRVLERARQLQFVVISVLSVFLLIAVILINIFLRMTITNPLRNMALLAKKVSTGDMTVEFEHDSKDEIGVLAASLNRMKVSLQIAMNMIESESEN
>NC_011729.1|WP_041237797.1|4092413_4093256_-|PhnD/SsuA/transferrin-family-substrate-binding-protein
MLTRRFFLGVIFLMLGGCQSANVSPSKLSVGVVSYGESQLSIEQYSKFKEYLGQELKSVIELEPTFNEIKALSQIERKAWDIVFAPPGLAAIAISSSKYTPIFPLEGTLETRSVIIVPQQSPIQQLPQLAGKSIALGQPGSATGYYLPIFNLYGLTLAEIRFASTPKQVLSWLSEGEVNAGAMSLAQFNRHRPDFSNTRFRVLFTDSHQVPNGAVLLSPNLSSQQQQQIRDALAHVSPAIASSAGYIPNVAPPDYTYLIQVVERVRQISERVKQQPAPLY
>NC_011729.1|WP_015955651.1|4108927_4109659_-|hypothetical-protein
MLKKHLSRYTVLFLFVLLAMLFFSSSPTLAADCGDSLFKEELLTPQFQKVKERFLSLANSFQPDSNVDSIFEVTIEGKSIEDIEKIITDNQSNYFTPAKIDGLASLVDGFSQSYDSVDGEWKKTVKVTTINRQGNTITPYIQIFYEDNNGGVIRIKPYGNTDAPPNLTHLRKAHGTLYFKNDPNGDLSWENEAFKVYGNQPIPKSPKDVKLPNGIVYGSQQGEDFLAQCWTYYTHVPVDSIFD
>NC_011729.1|WP_015955653.1|4110057_4111149_+|isocitrate-dehydrogenase
MTQTTPTIVVMHGDQTGEELLIQALRVLQPSVIRQPLQFLDYDLSLENRRATDNKVVWEAAQAARDSGLSLKAATITPEIAGDVGSPNAILREALNAKVILRTGRRIPKIRPIAGVYSPIAIVRMAVDDAYGSKEWRETTENGDEIAYRTSKISRSTCRAVAEFTFQYAKRTKAKVFGGPKFTVSATYEGMFKEELDAAAKRYPEVPYQPLLIDATFALLLQTTGESLVIPALNRDGDLLSDMVLQMYGSIAGSESLVLGFESGSDQVKTVMAEAPHGTAPALFGKNIANPMAMILAGAALLSYGRIPQAEKASRAIYESVFETIYEGKATPDLGGQMTTSEFTDEVIRRVETKLEVWSSLEG
>NC_011729.1|WP_015955654.1|4111211_4111949_-|class-I-SAM-dependent-methyltransferase
MEKSGLDFYDDEAVFTNYTEHRQRLDTPNDTLEKPVMMDLIGIITDKRILDLGCGDAAIGREFLDRGAASYVGLEGSHKMAALALQTLAGTSGQVIRQEIETWTYPPAAFDLVIARLSLHYVADLKRVFSNVRQTLDRQGQFVFSVEHPVITSCDRGWKAGTLRQDWVVDDYFKTGLRVTNWLGAYVKKYHRTIEEYFYLLQEAGLRIKDLREARPQLQHFHDIQTYERRKRIPLFLILAANKGK
>NC_011729.1|WP_015955655.1|4111988_4112576_-|chorismate-binding-protein
MTHATDIKTLARWMAADFSNQEQAWANPPLYAHIRVCMRPLSHDVLGGTSLFLEQAYDFMLNSPYRLRVLKFIVVDDRIELENYKVKEQEQFFGAARDPKRLQTLTIDHLEKLPGCDMTVEWTGHSFKGQVKPGKQCIVIRKDKETYLDNSFEIDEHKLISIDRGFDPVTDELVWGSIAGAFHFTRRASFADEVI
>NC_011729.1|WP_015955656.1|4112811_4114824_-|AarF/ABC1/UbiB-kinase-family-protein
MARITQPPEIQSQDYLTVDIEPFPLSATHRVPPQSLEDVADESWRYDPDRIYAYYGNRPLKVLGRLLTILVPFASFAIGLWWDKVQGLQVKNSIKRAIQLREMLTHLGPTYIKIGQALSTRPDLVPPEYLEELATLQDQLPSFPNEIAYHFIEEELGAPPQEIYAELSPQPIAAASLGQVYKGRLKTGEEVAVKVQRPDLLERITLDVYIMRRLATWAQNNIKRIRSNLVAITDELASRIFEEMNYVHEGRNAEKFAELYGHLPEIYVPKVYWEYTGRRVLTIEWINGIKLTNIKEIQARGIDATHLVEIGVNCSLRQLLEHGFFHADPHPGNLLAMNDGKLAYLDFGMMSIIKPYQRYGLIEAVVHLVNRDFEALAYDYVQLDFLSPDTDLRPIIPALTRVFGNALGASVAELNFKSITDQMSAMMYEFPFQVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLLTDPSEQLRTSLRDLLFKEGSFRWNRLENLLRNAKDSPDYDFDKVVDQGIDFLFSERGAFIRERLVNELVNSIDLITRKTWFNFSSSVREQVGLAVQETPPELRDSSKSLEHLKNIWGILQQTRGFDPMRLVPVLTKLITKPETQQIGQKIAEGLAQKAITRLIRHLLLEEEGSPTIDSYSYPVKAPIKRLPPATVS
>NC_011729.1|WP_015955657.1|4115014_4115254_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAVPGKIVSITGDDPLTRLGKVSFGGIIKEVNLAYVPEVEIGDYVIVHVGFAISKLDETAAEQTLEYFQEISKLTSA
>NC_011729.1|WP_015955658.1|4115257_4117600_-|carbamoyltransferase-HypF
MADNTTKQRLSLIIRGAVQGVGFRPFIYRLATELDLVGWVNNSSVGVFIEVEGDKDQLDTFLRRVQTENPPRSQIQAIETQWLDLTGYKTFEIRHSVSGEKTAVVLPDLATCPDCLQDIFDPHNRRYRYPFTNCTNCGPRYTIIEALPYDRCHTTMKGFKLCPQCQAEYENPLDRRFHAQPNACPKCGPHLELWDQQGQILETHESALMATATAIREGKIVAIKGLGGFHLVVDARNTTAVQELRKRKQRPDKPFAVMYPSLNLLKEHCLVTPTEEALLNSAECPIVLLKVLSSNFRSPLTPLYKGGNIRKEGEISPAVAPNNPYLGVMLPYTPLHHLLLAELGFPIVATSGNISDEPICIDELEALQKLNQIADLFLIHNRPIFRPVDDSIVRMMGGREMVMRRARGYAPFPIMIKSSPTHSQPSILAVGGHLKNTIAIARPPQIFLSQHIGDLETPAAFEYFQQVIASLRGLYDFNPQLIARDAHPDYISSQFAQEQNLPLIKVQHHYAHVLSCMAEHGLEPPVLGVAWDGTGYGEDETIWGGEFIYVTEDHYQRVAHFRPWRLPGGEKAVKEPRRSALGLLEAINLPKTSIEKAFTPQELVLLQTILKKHLNSPLTSSVGRLFDGVASLLNIRHQASFEGQAAMELEFIIGETITDKYYDFLLSSSTPTVIDWSPIIKAILNDIFCNISLGQISVKFHNTLVKIILEIVKRFPAHQIVLTGGCFQNRYLTERAIEQLQQHHYRPYWHQSIPPNDGGIALGQVIATLSKRMYINDQEV
>NC_011729.1|WP_049858495.1|4117980_4118241_-|DUF4351-domain-containing-protein
MRESVTYQDILQQGQKQGERIGLQLGLQQGKLELVIRQLTRRFGRIPEEQQDKMNQLSTVQIEDLAEALLDFQSRSDLVSWLENNS
>NC_011729.1|WP_049858496.1|4118412_4118673_-|DUF4351-domain-containing-protein
MRESVTYQDILQQGQKQGERIGLQLGLQQGKLELVIRQLTRRFGRIPAEQQDKMNPLSTVQIEDLAEALLDFQSRSDLVSWLENNS
>NC_011729.1|WP_041238323.1|4118981_4119344_+|hypothetical-protein
MLLKLPQNWLDLAWDLLKRFVQLLVVIATLGFAGVYLYQLVLFGSYSRDLTNTLLEHIPVAIGIPLATIAATCIVVVLEFSASDTIKFEVLGLRFEGASGQIILWGFCFLAFVSAVKLLW

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Crispr_ID: NC_011729_37

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_37

4545862-4545951

Orphan

N:A

Consensus_repeat	Method
TTAAAACCCAGACCAAGCAGCGATCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_37

>merge|NC_011729|37|4545862-4545951|CRISPRCasFinder
TTAAAACCCAGACCAAGCAGCGATCGCCCCGTAGGGTGGGCACTACCCACCACACCCAACCATTAAAACCCAAACCAAGCAGCGATCGCC

>NC_011729|37|35|4545862-4545951|CRISPRCasFinder
TTAAAACCCAGACCAAGCAGCGATCGCC	CCGTAGGGTGGGCACTACCCACCACACCCAACCA
TTAAAACCCAAACCAAGCAGCGATCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956049.1\|4533650_4534025_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956061.1\|4548601_4549024_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956056.1\|4541839_4542301_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956064.1\|4550260_4550881_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015956060.1\|4546528_4546711_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956065.1\|4551089_4554800_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|215643
NC_011729.1\|WP_049858501.1\|4547082_4548021_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|366316
NC_011729.1\|WP_015956058.1\|4544241_4545675_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_011729.1\|WP_015956052.1\|4537727_4538234_+\|Roadblock/LC7-family-protein	unknown	unknown	gnl\|CDD\|224929
NC_011729.1\|WP_015956055.1\|4541141_4541843_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956067.1\|4556830_4557562_+\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|234733
NC_011729.1\|WP_015956063.1\|4549695_4550169_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275319
NC_011729.1\|WP_015956054.1\|4540253_4540919_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NC_011729.1\|WP_015956050.1\|4534084_4534696_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
NC_011729.1\|WP_015956057.1\|4542306_4544190_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_011729.1\|WP_015956053.1\|4538314_4540135_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_011729.1\|WP_015956066.1\|4555098_4555815_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956062.1\|4549242_4549689_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_011729.1\|WP_157867639.1\|4534776_4537563_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|214500
NC_011729.1\|WP_083775358.1\|4556315_4556822_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373105

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956062.1\|4549242_4549689_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.85316e-61
NC_011729.1\|WP_083775358.1\|4556315_4556822_+\|hypothetical-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	2.71856e-57
NC_011729.1\|WP_015956065.1\|4551089_4554800_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|215643	PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.	0
NC_011729.1\|WP_049858501.1\|4547082_4548021_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|366316	pfam00805, Pentapeptide, Pentapeptide repeats (8 copies). These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.	1.45525e-08
NC_011729.1\|WP_015956052.1\|4537727_4538234_+\|Roadblock/LC7-family-protein	gnl\|CDD\|224929	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only].	2.08323e-08
NC_011729.1\|WP_015956058.1\|4544241_4545675_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.11769e-64
NC_011729.1\|WP_015956067.1\|4556830_4557562_+\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|234733	PRK00347, PRK00347, DNA/RNA nuclease SfsA.	4.147e-120
NC_011729.1\|WP_015956063.1\|4549695_4550169_-\|hypothetical-protein	gnl\|CDD\|275319	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein. Members of this family are putative virulence proteins of Mycoplasma and Ureaplasma species. Members share a region of sequence similarity (see TIGR04524) with protein M, a Mycoplasma genitalium protein that binds a conserved light chain region of IgG and blocks its protective function of antigen-specific binding. The seed alignment for this model includes an N-terminal signal-anchor domain and a proline-rich linker domain, and a C-terminal extension, in addition to the protein M-like domain recognized by TIGR04524. [Cellular processes, Pathogenesis].	0.00675717
NC_011729.1\|WP_015956054.1\|4540253_4540919_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	5.59635e-35
NC_011729.1\|WP_015956050.1\|4534084_4534696_-\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	1.90686e-06
NC_011729.1\|WP_015956064.1\|4550260_4550881_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.31213e-33
NC_011729.1\|WP_015956053.1\|4538314_4540135_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	7.71741e-57
NC_011729.1\|WP_157867639.1\|4534776_4537563_-\|GAF-domain-containing-protein	gnl\|CDD\|214500	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.	3.24018e-23
NC_011729.1\|WP_015956057.1\|4542306_4544190_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.02581e-07

>NC_011729.1|WP_015956058.1|4544241_4545675_-|HAMP-domain-containing-histidine-kinase
MKFLDRLLEPYHHFKINPNSLRVRLTVGVATVSALGLGSVAVWISWKMETILIQTHKQNIRYISDRFPNDVEIYSDMITVETGLQKAVDNLTDGRTLLWVKNPQGKITAQSMPLKMGTNGTNLVSLTQIFPYPDLQLLNGRYWLLCSNLLTVKGVNLGRVYIAQDITDDQTMFFSLLSNLSIATAIAIGVMTVTIAWYVRRSLQPLKRISQLTQTISAEQLGDARFQLDNAPGEVKELARTFEQMLTRLSDAWEHQRQLVSDVSHELRTPLTIVSGYLQSTLRRGSNLTPTQREALEIAGMEADRTIKLLQDLLNLARVDSGQMHFKLESINLNDWLTQVKSKTEKYSDRQINWEIPPNLIIIKADPDRLLQVLYNLIDNAIKYSDPQTPITVKLDRQQQAIIQVCDRGVGIPLQDQARIFERFYRVDETRSRSTGGTGLGLSIVKTFVEGMGGNISVSSQPGKGSVFSLTFPLLLN
>NC_011729.1|WP_015956057.1|4542306_4544190_-|hypothetical-protein
MKQKRGNNFPLKSEDYERKRLEVNFWLILGISLGLTVLIYALVLPIRESFLGILLYERGFTQYIAIWFACIVITVTVIKFIKLNGEFLGLKRLWISDKINFDNPQSLEVLTFQKSLIRENSLVALRCSRVIGAYIESNSRKTATEFALDDSSFYVSNSESSFAFPRILIWAIPLLGFIGTVVGISQAVNGFSGFLEQSGDVEQIKEGIGTVTSGLAVAFDTTLLALLLSVLVMIPLVLVERYESRLLLSIDIFINDQLLPRFKPENNPHNTLDPETINQALNQAVKDHFPTPQDLIEPAHNYAQQAVTKLTEILGSELSGIQKVNEILMAQLNQINQLSLQDRDSFTNSVERQQEINQDVLRQINSLVQQLNLNYTDLSGELTEQIKQLILQEQQSFTNSLERQQENNQDVVTQVKGLVQQLNLNYTDLSGELTEQIKQLILQEQQSFTNSLERQQENNQDVVTQVKGLVEQLNLNYSDLSKELTEQIKDLILQDKHSFTTALEKQQDLNQNLIITINGLVEQLKNSYSEISAGLTDQSDEIAQQLKLAANLLENRIKSLENATDKLSELTQLQGSLDQLVQSLGKVETVEQVILEAMTQLKGLQPSLEKLSKPRIIKFVESDELGD
>NC_011729.1|WP_015956056.1|4541839_4542301_-|hypothetical-protein
MRRRVIYRPAAEVELFPFLSILACTIGTLILLIIVLTTQIFSDQNAVTIIAETEGGKNLKKSPRYLECKADGVVIYPGEKFVAKADLYRPSSPFNQLLEQIKKNKNNQYLIVVIRPDGLPMFQEIREVIEKQGIDLGYEPVEQGIKLKLEESK
>NC_011729.1|WP_015956055.1|4541141_4541843_-|hypothetical-protein
MRRRRHRNLNLPTQNLDSFLDILTNTVGVLMFISLFITLVTVEAGQVIETPLVSQSNKKPHFFEIRNNRVVEINDAEVDRQLAFLMQSLPSCSRPTLPEMTDAGAYELYTEQLQLYEQCRLNAVAQIKNFQVRTKSYNVTLYDLNGLLYEPLHDEVGETIDQLSESDSQFETVLKNLNPQETYLAFIVRPDSFSAFRAARQKAREKGFDVGWEPHNTENPIVFGSNGRAIGVQ
>NC_011729.1|WP_015956054.1|4540253_4540919_-|phosphatase-PAP2-family-protein
MKIKHQTKSISWIDIFGKVNLIISGICLLIFLWLAILSFQRNPQLNQFDENFLLQLKESLPPQFIYFARIFYWLGNAETSACVVLISIIILAWRRYWQEAQVVALSSFGVLMLVDQILKPIIYRLRPLDRLVHVDGRSFPSGHATGNFLLYFLLAYILSYRFPKYKIHFYITAAITLFLMGIASMYLRVHWLTDILGGYGLGFILLTLSLGVLKVTQKKYQ
>NC_011729.1|WP_015956053.1|4538314_4540135_-|glycosyltransferase-family-39-protein
MTKTQLDPPLKNRHRFLAQHSKKLWIFSIFWLALISWIGFLWNLGSIGLVDKTEPMFVEAARQMVVTGDWITPYWNGETRFDKPPLSYWLMAIAFKVFGVNEWAARIPSALMAIALVVLGFYTLRFFGFLLPTSKKDEFKLWLSAWLGAGILALNPAWIAWARTGVSDMYLSSSIAMALLSFFIGYAQQEKDPELKDKFSARGGWYILFYVFMALAVLAKGPIGIVLPVFIVSGFLFYVGKFKQVLLETKPLRGSLIFLAIAVPWFVLVTLANGKEYIDVFFGHHNFQRFTSVVSYHPGPWYYFIPVVLVGLIPWSIYLPSAMIQLKFWDRNLWKTSDRSTHLGLFSLFWFSIIFIFFSASSTKLPSYVLPGMPAAGILVTLFWSAQFDKNNKLSKQRWLLGISGLVNIVVLIALALASFYSPQLVGGDPRKPEFSTLLQQSSLPILGGLIWGLVALGAIFLLLRRRDWRWLWIPNLIGFMAFISFIALPVAQIRDKDSQLPLRQLSALITQVRQPGEELLLVGFIRPSLVYYTRQNVEFFNNQERLIEYLESQKNSSQVAPTVLLITEQKYIDRLGLKPQDYQFLDQQGVYQVLRVTRATILAKK
>NC_011729.1|WP_015956052.1|4537727_4538234_+|Roadblock/LC7-family-protein
MNIKRINALLTELMNICREIEGSVLVSSDGQLLTEAIGIDNQTGQLLAGTFLHLMQNTCQEFDDSEIESISLKGQDGYVIFTSCYSEVFLLIKASHKVSVGFLKREIELMSKKLQTEFQETSSSVFSSYRSTAPELLNSSTKTGSSKFNRNERSIQTTSIRYRGLFKS
>NC_011729.1|WP_157867639.1|4534776_4537563_-|GAF-domain-containing-protein
MLAGAISLTLIPPLIVGGLSYLAIQSLKTQLVEDRQNTQSPLTPQLSVIALISGATALFSATIALRLTRLVLRPILKASQTSTTVVNRLRQENFPLRSPETNPDALRNLPKNINLIAQQIPTLLWKREATDEQFQVLMTISRHIWESFSEENVLRTTVEEVRQTLNTDRVAIFRFDNELEGTFIAESVAPIWPKTLWTTINHALFDQNYTQMYQEGLIHAINDIYQAELSDADIGLLERFAVKASLIAPIFRENKLFGLLIAHQCANSRHWQPSEIDLFAQIAIQVGFALDHARLLAQVDHSAEQTQIFTDITLNLRKSLREEDVLTTTVEEVRKAFKADRVLVYSFDSDWYGTVIAESVVPGFPKALWAKIKDPCFAEGYVESYQQGRVHALDNIYEAGLTECYLQQLEPFGVKANLVAPILKDERLFGLLIAHQCSNPRHWQPSEIDLFAQIAIQVGFALDHARLLGQVDHSAEQTHLFSDITLNLRKSLREEDVLTTTVEEVRKAFKADRVLVYSFDSDWYGTVIAESVVPGFPKALWAKIKDPCFAEGYVESYQQGRVHALDNIYEAGLTECYLQQLEPFGVKANLVAPILKDERLFGLLIAHQCTNPRHWQPSEIELFTQIAIQVGFALDHARLLGQVEQAYQTAHLIGQKQHQQQETLHLQLSEILGENQTGLKNLSTEALTQMDRVSVIYNQIRDTANHVENQNTIIQQIESQQQQMTKMIQSSCESMNQLLEQISTFQNTFIQTADQLNLIEQPVRKLFDVISLVNNIMPQVKFEALSAELEVSRIEGGNGQLSSMIKKALSLTAQMETEFNQIVPLIGEIQGQTHEVSTTIRREIQQIKIDNHLVEEIKLLSGQIIRFNGQITDLVKEIAQVRIEDGDTLAQVSHSVLEMATFIRQTSEQTRLLVNSFDKIAEIIEQHE
>NC_011729.1|WP_015956050.1|4534084_4534696_-|hypothetical-protein
MSIDVIDERLNSLYELAKEYPNDTNLQEAVALIKSLRRSRGSLQGWNERYRQDNGVLKTQMSDVSQQNSTLTTKIAEISQENSTLKTKVVEISQKNNNLKIEKIKLSHENTHLKTELAILNQEMLQLTEEKAQILAQRERAIAEIKQIQIEIEVAATKVKATKSIFGKFSILWTLIKSLFLDDNFGDYGTMDNALPFDQVNPK
>NC_011729.1|WP_015956049.1|4533650_4534025_-|hypothetical-protein
MGRLNQLIDQLETLHQQDIKNSAQVYGITAILSSRLQEILTNLNPSEQLLSSGKITQEEIIAKYGNYNNAYNAYKQAYGIKCKKGWTSFLAAIQGLTPPITLEQRVEKLEATVKELVQVLLENK
>NC_011729.1|WP_015956060.1|4546528_4546711_-|hypothetical-protein
MPTVQQAIKAVILCQWLSNGYQPISIFRYDVKLKTIYIQGGISDDIAIVIFSDGNWRFIQ
>NC_011729.1|WP_049858501.1|4547082_4548021_-|pentapeptide-repeat-containing-protein
MKASEVLKCYAQGERNFQRVNLRGQSFIGADLSGADFSEADIRGTNFKNAILRESKFCGAKAGLQKHWTLILLIVSWIMSGVAGFLIAFAPDLVSFIFDSSPTLDDQIGDWVSLGVWIVIFAVIRRQRLEESLFVLLDTFFVVHSPILFALSYTEAGVLAVAFAGVLALSIVGVFAVSIVGAFAVAGCFAVAFAGVFAGVFAGAFIEVWGFREVLAVAVFFAFSAFGGVSVSGYVVVRTTHIIGGLVVWLWVRSIAVAFASTGGTSFYNADLTDADFTGATLKSTDLRAKSLTPTCFDDTIELNLARLGVWA
>NC_011729.1|WP_015956061.1|4548601_4549024_+|hypothetical-protein
MNRPSGVIILAILNLVGGFWGIIFNLLAFLFGGLLLTGGVVSGNAQITGGGAVILLTTGVSWLISVLAIALSYGLFMLKNWAWLLTYIIQVINIVINAIRFLLSGSFFESIGALVNVTIACFILFYLNQSKVKNAFGRVS
>NC_011729.1|WP_015956062.1|4549242_4549689_+|DUF29-domain-containing-protein
MKSQTLYDKDFNLWIETTLTQIKERNFESVDWENVLEELESLGKQQKRELENRLIILLEHLLKLTYWEVEKNHNERGWLGTIVEQRKQILKLIKNNPSLKPFLNEVYENCYTDARDLAIVKTGLDQEIFPIQPILTLEELLNESFSIH
>NC_011729.1|WP_015956063.1|4549695_4550169_-|hypothetical-protein
MKNLMTVVALMISVTGVGVSLAREEVRCYLGLSSSACHSTPESLSSPQKANSTPSSQTESSSQPQETEEKPPIKLPSAIEEITKIGKEALAPSSESSPEVTNPTTEEEPPTEPPQISRQQPEEKTDISSPTYLSPITEPVELEVIPPPEDSTNSSQN
>NC_011729.1|WP_015956064.1|4550260_4550881_-|Uma2-family-endonuclease
MIIQSVLGNNLIDFDEFINWYPENSDFHYELHNGVITKMPKQRGKYSQIAGFLMTELSFEIKRLGLPYFIPKDCIIKTDDLSGYEPDVIILNRENLENEPRWERESTIILCQSIKLVIEVVSSNWSDDYALKLDVYETLGISEYWIVDYLGLGGRKFIGYPKQPTLTIYTFENGDYQPRQFRKNETIKSPTFPQLTLNTEIIFRGK
>NC_011729.1|WP_015956065.1|4551089_4554800_+|magnesium-chelatase-subunit-H
MKRIVLIAGFESFNADLYRKAAELATSRCPELDIQVFSDRALTEQPETVETALKNAQVFFASLIFDYDQVIWLRQRVQQIPIRLVFESALELMSLTQLGKFAIGDKPKGMPKPIQFILSKFSSGKEEDKLAGYISFLKTGPKLLKFIPAQKVQDLRNWLIIYGYWNAGGTENVSAMFWTIAEKYLDLKIGEIPPVLETPNMGLLHPDSSDYFTSPQQYLTWYQKHSSLKIGQSPIVGILLYRKHVITKQPYIPQLIRYFEAEGLIPLPIFINGVEGHVAVRDWMTTPYETQQRQQGNIAIPSLYKEAVEVDSIVSTIGFPLVGGPAGSMEGGRRVEVAKQILTAKNVPYFIAAPLLIQDIYSWTRQGIGGLQSVVLYALPELDGAIDTVPLGGLVGEDIYLIPERVKRLTGRVKNWIKLRRKLPSDRKIAIILYGFPPGFGATGTAALLNVPKSLLKFLQELKEQGYTVGNLPEDGEELIRQVKEADESADERRLTRMDQLSGARVNVKTLEEWLGYLLKSRIEKQWKSLTDTGIKTFGDEFHIGGVQLGNIWIGVQPPLGLSGDPMRLMFEKDLTPHPQYTAFYKWLQHEFEADAIVHFGMHGTVEWLPGSPLGNTGYSWSDILLGNLPNLYIYAANNPSESMLAKRRGYGVLISHNVPPYGRAGLYKELMALRDLIAEFREDPERNYALRDPICQKIVDTGLDADCKFEEGDKLGIDFTVENARLFSKNALSRYFVKVYEYLQVVEQRLFSSGLHCLGDAPNEEGLRSYLNAFFGEGLSEWELNQIISRRDSESRRVREGIEIVNLLEQNGDELVNLLRGLNGEYILPAAGGDLLRDGVGVLPTGRNIHALDPYRMPSPAAFERGREIAQKIIAQHLKEHDKYPETVAVMLWGLDAIKTKGESLGILLELVGAEPVKEGTGRIVRYELKSIPDVGHPRIDVLANLSGIFRDTFVNIIELLDDLFQRASDADEPEEDNFIRKHALALKVQGVENVSARLFSNPAGDFGSLVNDQVVDGNWESSEELAKTWQGRNSFSYGRKDKGQARPEILAQLLKTSERIVQEIDSVEYGLTDIQEYYGNTGGLKLAAEKQSGKRVTANFVESFSKDTTPRKLEELLRLEYRSKLLNPKWGQAMANQGSGGAYEISQRMTALIGWGGTANFTDSWVYDQAADTYALDAEMAAKLRKANPEAFRNIVGRMIEAHGRGFWNADEEKLQKLQELYELTEDQLEGINN
>NC_011729.1|WP_015956066.1|4555098_4555815_-|hypothetical-protein
MGKVAKQLKTFWESCLLEQCKLNSTQRRGVIRWLLGENTDQIENLSQEELASAVQGINNRYRILQNHYLGVTPEQAYRHLFNRFGTAMMKYSLVRHWLKASPEHQKIMIKTFEGMIEQILRVDPYLRGSQNKIALCVEDTSLRNALLLTTIEEYCLVSINNHPLLLHLLSHFLHDLRNKQQISLSQNKFLQLLTREIQCQLLHSQSPESNQLSYIQQNLGKIAFEQALKNYRELQLVG
>NC_011729.1|WP_083775358.1|4556315_4556822_+|hypothetical-protein
MSMAQSQPPKRRRRRGVILTVQGLEKTLEQTLDLAHRHHLHWSREQVEKLLSFVGGNPYLIRLALYNIWHEDITLQELLTISPLSEDNIYRNHLTRQLLTLQQQNEGLAEAFAKVVMSPNPVELELIKAFQLQSLGLVRFYPQGNTVHSSCELYTRYFQAYFADKNKS
>NC_011729.1|WP_015956067.1|4556830_4557562_+|DNA/RNA-nuclease-SfsA
MSNDLSTLIYRYPPLIPGRLHRRYKRFLADIELLSGEIVTAHCPNTGPMIGVSTPGSKVYISQSNNPSRKLAYTWEMIEVDGTWVGINTALPNQVIKLALTQHLFSQLVGHYTQIRPEVPYGKENKSRIDFLLTDEEALSSIYLEVKNTTLAENKMAMFPDTVTTRGQKHLREMMALLPTSKAIMLYFINRSDCKLFTSGDRYDPVYGQLLREAVATGVQVLPCCFDVSPEGIRYIGLAKYTH

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Crispr_ID: NC_011729_38

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_38

4756609-4756730

Orphan

N:A

Consensus_repeat	Method
CTGTTAACTGTTCACTGTTCACTAAAGAAGGTGCGTTACGCTACGC	CRISPRCasFinder

1 spacers

csx15

The CRISPR arrays of NC_011729_38

>merge|NC_011729|38|4756609-4756730|CRISPRCasFinder
CTGTTAACTGTTCACTGTTCACTAAAGAAGGTGCGTTACGCTACGCTAACACATCCTACAGTAGTCCCACTGTTAACTGTTAACTGTTCACTGTTCACTAAAGAAGGTGCGTTACGCTACGC

>NC_011729|38|36|4756609-4756730|CRISPRCasFinder
CTGTTAACTGTTCACTGTTCACTAAAGAAGGTGCGTTACGCTACGC	TAACACATCCTACAGTAGTCCCACTGTTAA
CTGTTAACTGTTCACTGTTCACTAAAGAAGGTGCGTTACGCTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956229.1\|4743849_4745853_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NC_011729.1\|WP_015956239.1\|4757536_4758925_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NC_011729.1\|WP_015956237.1\|4755157_4756246_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NC_011729.1\|WP_015956228.1\|4743350_4743596_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041237836.1\|4754706_4755129_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226207
NC_011729.1\|WP_015956231.1\|4747506_4750089_+\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223385
NC_011729.1\|WP_015956238.1\|4756853_4757537_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011729.1\|WP_015956234.1\|4753366_4753840_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NC_011729.1\|WP_015956235.1\|4753843_4754707_-\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320685
NC_011729.1\|WP_015956241.1\|4760181_4760598_-\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_011729.1\|WP_015956248.1\|4763190_4763484_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956232.1\|4750493_4751198_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NC_011729.1\|WP_015956247.1\|4762194_4763097_-\|transcriptional-regulator	csx15	cd09766_csx15_CAS-I:CAS-III	gnl\|CDD\|187735
NC_011729.1\|WP_157867471.1\|4761719_4761887_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956233.1\|4751545_4753132_+\|KAP-P-loop-domain-containing-protein	unknown	unknown	gnl\|CDD\|284995
NC_011729.1\|WP_015956243.1\|4761132_4761351_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956244.1\|4761382_4761658_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956242.1\|4760620_4761034_-\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_011729.1\|WP_015956230.1\|4746022_4747240_-\|geranylgeranyl-reductase	unknown	unknown	gnl\|CDD\|177713
NC_011729.1\|WP_015956246.1\|4761955_4762156_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956229.1\|4743849_4745853_+\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_011729.1\|WP_015956239.1\|4757536_4758925_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	7.2084e-68
NC_011729.1\|WP_015956237.1\|4755157_4756246_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NC_011729.1\|WP_041237836.1\|4754706_4755129_-\|hypothetical-protein	gnl\|CDD\|226207	COG3682, COG3682, Predicted transcriptional regulator [Transcription].	7.17042e-39
NC_011729.1\|WP_015956231.1\|4747506_4750089_+\|M1-family-metallopeptidase	gnl\|CDD\|223385	COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism].	6.02518e-176
NC_011729.1\|WP_015956238.1\|4756853_4757537_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.99038e-86
NC_011729.1\|WP_015956234.1\|4753366_4753840_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.14844e-82
NC_011729.1\|WP_015956235.1\|4753843_4754707_-\|M56-family-metallopeptidase	gnl\|CDD\|320685	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	5.43948e-33
NC_011729.1\|WP_015956241.1\|4760181_4760598_-\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	2.44251e-24
NC_011729.1\|WP_015956232.1\|4750493_4751198_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	3.59664e-37
NC_011729.1\|WP_015956233.1\|4751545_4753132_+\|KAP-P-loop-domain-containing-protein	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	0.000121739
NC_011729.1\|WP_015956247.1\|4762194_4763097_-\|transcriptional-regulator	gnl\|CDD\|187735	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small protein loosely associated with CRISPR/Cas systems; some are fused to AAA ATPase domain, also known as TTE2665 family.	7.17812e-39
NC_011729.1\|WP_015956242.1\|4760620_4761034_-\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	2.4626e-29
NC_011729.1\|WP_015956230.1\|4746022_4747240_-\|geranylgeranyl-reductase	gnl\|CDD\|177713	PLN00093, PLN00093, geranylgeranyl diphosphate reductase; Provisional.	0

>NC_011729.1|WP_015956237.1|4755157_4756246_-|alanine-dehydrogenase
MEIGVPKEIKDQEFRVGLSPGSVRVLSESGHTVFIETQAGLGAGFTDLDYQQAGAKIVNTPTEAWHKEMVVKVKEPLPSEYNYIQKEQLLFTYLHLAADRTLTESLIESGVTGIAYETVELPNKTLPLLTPMSIIAGRLSVQFGARYLEKQQGGRGVLLGGVPGVRPGKVVILGGGVVGTEAAKIAIGMGAQVQILDVSVDRLSYLETLFGSRVELLYSNSTQIERVVPDADLLIGAVLVTGRRAPILVPRQLVSKMRPGSVIIDVAVDQGGCIETLRPTSHSHPTYIEENVVHVGIPNMPGAVPWTATQALNNSTLPYVVKLANEGLNALQTDAALAKGLNVKNHCLIHPAVCEVFPDLAR
>NC_011729.1|WP_041237836.1|4754706_4755129_-|hypothetical-protein
MPPLPDYRPKQLSLGPLESEILNIVWDLGTATVKDVHDRILSDPDRELAYASVTTVLRRLTNKGWLTCHKEGKAFYWQPLVSRKQAQAIKSFDQLHRFLAISNPDIVASFADSLDTASLEQLSEIATHLQALRKQRQGKR
>NC_011729.1|WP_015956235.1|4753843_4754707_-|M56-family-metallopeptidase
MHLLMILTALGLAWGIRLFAPSLTKNSLNYWQRSLFFFLFPPLLLLMTSVAVIVMGYHGQMFGLEASWYSYLLAGIFLIVALVSGVKLAYQGWHSVKNLSSHPQKTVFGKPARILNIDFPYSAQIGFWKPELVISQGLLNTLDQEHLQAVLAHEQAHDDYHDTFWFFWLGWLRSFTRWLPHTERLWEELLFLREVRADYQASKQIDALVLAESLLIVAQQVTQTSFEFSAGNCSAALHDSIHQNRLGERINALLSEDKPVESESYTYWSWGWLPLSLLPLTTVPWHC
>NC_011729.1|WP_015956234.1|4753366_4753840_-|thioredoxin-dependent-thiol-peroxidase
MSNLPQIGEKVPNFTGKNQEGILVSLADFSSHWLVLYFYPKDNTPGCTTEAIDFSQFLGEFTALGAKILGVSPDSEKSHGKFIEKHNLSIQLLSDPDHQVAEAYGVWGLKKFMGKEYMGIIRSTFLIDPDGKLVYTWPNVRVKGHAEAVLKKLEEVM
>NC_011729.1|WP_015956233.1|4751545_4753132_+|KAP-P-loop-domain-containing-protein
MSNTEELKQLIVTYVNSKNTGYAIMINGEWGAGKTYFWKTVIEPYLTDIDKKTVYISLYGLDNLEQIINLISLELLPSYKNELTQAADSALNITLKFLNIDPGIKDKAVDLLREQKLSKNLSNFVLCFDDLERSSLNIQEIFGYINQFVEHYHFKTILICNEKEFKIKNSDYQQTKEKLIAYTFYFNPSLEERVNQLIQLTEHQEDFREYADLIISLIKASDTYNLRLIKIAFVIANTVFTYLKEFKEYENLPDTIKPEILIFIFSVNLEFRKGEADLNQLEQWVIKGYDFTDSILTQESTYLSKFIKQYYSQSNLVIPTPFLSIYNYLIKGYFNLDLFYQELDKFKGKHPSLKILFLEDIKLLSDEEFYQTAQDYLDELHSDQINQPILLIKLSNKLIKFSEMGLYNLSAEKIYNIFKDSIKRLEENSQLQYQDLKNEPFLFYHEPKSQYYHDFKEIIIEANTKIYQKQVTEKANKLINLLKNDPKIFFTEVQQYNDIPLFQSFDISQLFHLIINLKNQYIYQFYLL
>NC_011729.1|WP_015956232.1|4750493_4751198_-|rhomboid-family-intramembrane-serine-protease
MVPLHDNNPTRITPYVTYVIIGINIFVFLYELGLSERQLEQFFDQYAVVPKEITVSLQNGSLDLLIPAFLTLITSQFLHGGFLHIGGNMLFLWVFGNNIEEQLGRIKYIIFYLGCGILAGLSQWLFSMQSEIPSLGASGAIAGILGAYIIRFPKARVLTLVPLGFFITTLYIPAIFFLGFWFFQQALYGVASLQAPANIGMEGGGVAYWAHAGGFVFGVILGPILGLFSSRRNQ
>NC_011729.1|WP_015956231.1|4747506_4750089_+|M1-family-metallopeptidase
MLNIYFDTEDNRKPFELPGAKPHYNPDRPGQVNHIFLDLVLNIPDKSFQGTCTITLTPVRKGITELTLDGVNLKIESVLIDGVSQPYDYDGQQLIIHLLNPTEEKPINIAIAYRVEHPQRGLYFIGPDDQYPHKPVQVWTQGEDEDSRFWFPCFDYPGQLATSEIRVKVPKPYLAISNGELIHTEEVGEEKIFHWMQKQIHPTYLMTLAVGDFAEMKDQWHDIPVTYYVEKGREEDGRRSMGKTPRMIDFFSYKFGYRYPYPKYAQVCVGDFIFGGMENTSTTLLTDRCLIDHRAAIDNRSTESLVAHELAHQWFGDLVVIKHWSHAWIKEGMASYSEVLWTEQEYGQEEAAYYLLREARNYLEEDSSRYRRPIVTHIYREAIELYDRHLYEKGACVYHMIRTILGDELFDKAIHTFVNDNAHKTVETIDLLRAIDKSTGYNLSFLFDQYVFRGGHPDYQVSYAWDGNSKLAKITVTQTQAKDNEKDLFDLKIPVGFGYIKEKDDKTKIKLKTYTLRIHEKEQTFYFPRKKKPDFVSFDVGNNFLKTVVLEYPLSELVAQLKYDPDPISRIYAAVAIAKKGGLEAVEVLSEALKKEPFWGVRLETAKQLAKIQLDQAVTALIKGLEDDNPKVRCAVVEGLGEIKTLSSYDTLKSFLSRGDASYYTEAATAKVLGGMVSGNLKEKEGEVIELLKTVLQERGGWNEIVRSGAIGGLSQLKTSSVAVDVILEYTKPGVPQPLRLAAIRALGGISTGQSPDKVAVILENLESISKETFFLTQVAVVSSLGQMETPKAIGILQSLADQTPDGRVRRIAEEAIEKVRKNLGSDKAIKELREEVDHLKQENQDLKSRLAKLEAKAKK
>NC_011729.1|WP_015956230.1|4746022_4747240_-|geranylgeranyl-reductase
MLRVAVVGSGPAGSSAAETLAKAGIETYLFERKLDNAKPCGGAIPLCMVSEFDLPPEIIDRRVRKMKMISPSNIEVDINLDNQEEYIGMCRREVLDGFMRNRAAKLGANLINGTVYQLDIPNNSTDPYVLHYADHSNGEAKGIMKTLKVDVVIGADGANSRIAKAIDAGDYNYAIAFQERIRLPEDKMTYYNDLAEMYVGKDVSPDFYAWVFPKYDHVAVGTGTMKVNKAIIKDLQAGIRTRAARKLEGGQIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIIETSNAGQRIPTEDDLKLYLKRWDKKYGMTYLVLDLLQRVFYRSDASREAFVEMCSDKDVQRLTFDSYLYKTVVPANPLIQMKITAKTLGSLLRGHALAP
>NC_011729.1|WP_015956229.1|4743849_4745853_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MTIKNKWQPPRIPPLGSLLLILAGVSFVAYLFWPRSQSLSDIPITPYSTFLEQVDEGEVKQVKIADNIILYKLKPPIASLPDDLIPNNPLQSSQKGNNPFYSSPNASEETSESQPGQIFATIPLNDPQLPQLLREKGVSFEAAPPPQNGWLMTLLAWVVPPLILVAAMQYFVNRNDDTRQSLLFNKNKAKVYVEGETEKITFANVAGAEEAKTELVEIVEFLKDPGRFSRIGARIPKGVLLVGPPGTGKTLLAKAVAGEAGVTFFSISASEFIELFVGTGAARVRDLFKQAKEQAPCIIFIDELDAIGKSRASGGAMSGGSDEREQTLNQLLTEMDGFSVGEATVIVLAATNRPETLDSALLRPGRFDRQVLVDRPDLAGRMAILEVYARKIPLADDVDLKALATQTPGFAGADLANLVNEAALLAARKQQEKVSQADFKEAIERVVAGLEKKSRVLNEQEKRIVAYHEVGHALVGAVMPGGGKVEKISIVPRGMSALGYTLKLPTEDRFLMTDAEFRQQIAMLLGGRAAEAIVFGSVTNGASDDLRRATDIAERMVTTYGMSKILGPLAYDKGASANFLSNGNGSIRRPVSDETAKAIDEEVKQIVEGGYQQALAILTQNRELLERISQQLLQTEVIEGEQLHGLLNQASFVDDSWLDSNSHLSKV
>NC_011729.1|WP_015956228.1|4743350_4743596_-|hypothetical-protein
MAQENKHNQETMSEDVAQNPGARTAETNQNPAITEEEARNAAAGETPNASGSTTPSTAEDHVPSRSDPEATDLPTSYDPQP
>NC_011729.1|WP_015956238.1|4756853_4757537_+|response-regulator-transcription-factor
MRILLVEDEPGIAQFINQGLKETGYGVDLAIDGLEGKRYIESVEYDIIILDIMLPKIDGLTLLGEIRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQRRPPLQFSTILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQVWDLDFYTNSNVVDVYIGYLRRKIDRGFDNQLLHTIRGVGYCLKPEGNEN
>NC_011729.1|WP_015956239.1|4757536_4758925_+|HAMP-domain-containing-protein
MTKKWLRLKPKSLRVRLTGWYIILLGCTLVGFSSYLYSQLKQSLLIQINTNLNITTSEVINTLIAEDEHFALKKTQKTEAFAHDLIKAGFAVRLLSASGKVVDGFGEYQEFPQLIPKQSGYSDFRDNSGQWRMYSHPIHLSSGQGWIQVAQSLEPINQASDHLLFLMLISCPLVLLLAALGGLFLADQALRPINTIISTAQAINPHDITRRINYRGSIDEVGRLAMTLDRMLDRLEEAFEHQQRFTGDASHELRTPLTVIKGRIGVALSQLRTPEDYQETLQALEQEVDRLIRLANSLLFLTRLEQKNIDLSPIDLSELLVILVEQFQLMAEPRKIQLKESIEKDLFILGNSDYLTSLLLNLLDNAVKYTPDNGQVWVKTQTDTEKVHIQVINTGKGIAPTDLPHLFKRFYRVESDRSRHTGGTGLGLAIAYEIVRLHGGTITVESQLNQATTFTVSFVANS
>NC_011729.1|WP_015956241.1|4760181_4760598_-|toll/interleukin-1-receptor-domain-containing-protein
MIPSEAFLSHSSQDHEFISKLVNELRRHGIPLWYSKTNIIGAQQWHDEIGSALRRCDWFLVVLSTNSVKSMWVKRELIFALQQKRFENRIVPILYESCDFESFSWVLPSFQIIDFREDFTEGCRNLLRLWGLGYQLNP
>NC_011729.1|WP_015956242.1|4760620_4761034_-|toll/interleukin-1-receptor-domain-containing-protein
MKVFISHSHTDTKLAKKVADTLRQAGFEVWDESQLLPGENWAKSIGNALEESDAMVVLLTPSSVHSSYVNNEVGYALGTRKYKGRLIPVIAAPSEQLDREDIPWIFNLEQFQMIHVPNLEQDEEGLKKIAQALKAVA
>NC_011729.1|WP_015956243.1|4761132_4761351_-|hypothetical-protein
MTELLEQVIAQLKNLPSSEQDAIARMILEEIDSEARWEATFAKSQDILAKLAAEAMAEYRAGKTQELDPEIL
>NC_011729.1|WP_015956244.1|4761382_4761658_-|hypothetical-protein
MSQPTASINIKLIDSLAQIILSLNQEERELLAQKVQSSLLNSEEIKYKLEVLKRDLAVGAEQLKTGDYTEYNDSSLPSLLETIKKRGKQRL
>NC_011729.1|WP_157867471.1|4761719_4761887_-|hypothetical-protein
MMTELLEQAIAQLKNLPPSEQDAIATMILEEIDSDKSQDVLAKLAAEAMAEYHAS
>NC_011729.1|WP_015956246.1|4761955_4762156_-|hypothetical-protein
MTKPDFNHMTRQELRAYILAHREDDEAIEALIKRGDPNSPRYKFPQTEEDLREMQEILKRKLESNV
>NC_011729.1|WP_015956247.1|4762194_4763097_-|transcriptional-regulator
MSRSLWTEIERWVINGTEGTKVEMKREFPLTDKPSRARLAKLIVAMANASGGTGYFIVGVVDKKDRITNSIEEIIYGVNDNLDSYQRLIQQALNEFTNPVPIVSYQEIIPPEISKKIGVIIIDRSRNKPHEITRECEKIKPGIYLKRGSDVFQANREDILFMTGANGKEQGIILNFTHPVTENQIRQIEEKTGLHISEIVQPPKVPIHFNENNSFEDQVAKSVDEIALTDEQWQELNILVNVPGFATITAPLIAELHGRMGHFPKILRFKRSSEDTSRYDFEEVVQLQRIRDKARSRHQQ
>NC_011729.1|WP_015956248.1|4763190_4763484_-|hypothetical-protein
MKSTLYLTAKVLPGNRIEIQAPNLAEGQTVEVVILVPEDSSYSVEDKELSLTQRQEFLKLPMAERRRILESQAEAMVSHYQQDSESYITIHKYANGK

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Crispr_ID: NC_011729_39

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_39

4870936-4872533

Orphan

N:A

Consensus_repeat	Method
TCTTTNTCTTGNGTTAATTGTTG	CRT

25 spacers

The CRISPR arrays of NC_011729_39

>merge|NC_011729|39|4870936-4872533|CRT
TCTTTTTCTTGGGTTAATTGTTGGAGTTGAGTTTGTAGAGAAGAAAGTTGCTGCTGTAAGTCCTCTTTTTCTTGGGTTAATTGTTGGTTTTCTGGTTGAGGTTGCTTAAGTTGTTGCTGTAACTCTTCGTTTTCTTGAGTGACTTGTTGGAGTTGAGTTTGCAGCGAAGAAAGTTGCTGCTGTAAGTCCTCTTTTTCTTGGGTTAATTGCTGGTTTTCTGGTTGAGGTTGGTTAACTTGTTGCTGTAACTCTTCTTTTTCTTGGGTTAATTGTTGGATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGTTTTCTTTCTCTTGAGTTATTTGTTGGTTTTGAGATTCAAATCCTTTGACTTGTTGCTGTAAGTCTTCTTTCTCTTGAGTTAATTGTTGGGTTTGGGTTTCAACCTCTTTGACTTGTTGCTGTAAGTCTTCTTTTTCTTGGGTTAATTGTTGAATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGCTTTCTTTTTCTTGAGTTAATTGTTGGGTTTGGGTTTCAACCTCTTTGACTTGTTGCTGTAAGTCTTCTTTTTCTTGGGTTAATTGTTGAATTTGAGTTTGAGATGAAGAAATTTGCTTGTGTAAGTCTTCTTTCTCTTGAGTTAATTGTTGGGTTTGGGTTTCAACCTCTTTGACTTGTTGCTGTAAGTCTTCTTTTTCTTGGGTTAATTGTTGAATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGCTTTCTTTTTCTTGAGTTAATTGTTGAGTTTGGATTTCAACCTCTTTGACTTGTTGCTGTAAGTCTTCTTTTTCTTGGGTTAATTGTTGAATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGCTTTCTTTTTCTTGAGTTAATTGTTGAGTTTGGATTTCAACCTCTTTGACTTGTTGCTGTAAGTCTTCTTTTTCTTGGGTTAATTGTTGAATTTGAGTTTGAGATGAAGAAAGTTTTTCCTGTAATTCCTCTTTCTCTTGAGTTATTTGTTGGTTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGTCTTCTTTCTCTTGAGTTAATTGTTGAGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGTCTTCTTTCTCTTGAGTTAATTGTTGAGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAATTCCTCTTTCTCTTGAGTTAATTGTTGAGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGTCTTCTTTCTCTTGAGTTAATTGTTGAGTTTGGGTTTCAAACCCTTTGACTTGTTGCTCTAGGTCTTCTTTGTCTTGGTTTAATTGTTGAATTTGAGTTTGAGATGAAGAAATTTGCTTCTGTAAGCTTTCTTTCTGTTGAGTTAATTGTTGAGTTTGAGATTCAAACCCTTTAACTTGTTGTTGTAAATCTTCTTTCTGTTGAGTTAATTGTTGAGTTTGGGTTTCAAAACCTTTGACTTGTTGCTGTAAGCTTTCTTTCTGTTGAGTTAATTGTTGAGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGCTTTCTTTCTGTTGAGTTAATTGTTG

>NC_011729|39|10|4870936-4872533|CRT
TCTTTTTCTTGGGTTAATTGTTG	GAGTTGAGTTTGTAGAGAAGAAAGTTGCTGCTGTAAGTCC
TCTTTTTCTTGGGTTAATTGTTG	GTTTTCTGGTTGAGGTTGCTTAAGTTGTTGCTGTAACTCT
TCGTTTTCTTGAGTGACTTGTTG	GAGTTGAGTTTGCAGCGAAGAAAGTTGCTGCTGTAAGTCC
TCTTTTTCTTGGGTTAATTGCTG	GTTTTCTGGTTGAGGTTGGTTAACTTGTTGCTGTAACTCT
TCTTTTTCTTGGGTTAATTGTTG	GATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGTTT
TCTTTCTCTTGAGTTATTTGTTG	GTTTTGAGATTCAAATCCTTTGACTTGTTGCTGTAAGTCT
TCTTTCTCTTGAGTTAATTGTTG	GGTTTGGGTTTCAACCTCTTTGACTTGTTGCTGTAAGTCT
TCTTTTTCTTGGGTTAATTGTTG	AATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGCTT
TCTTTTTCTTGAGTTAATTGTTG	GGTTTGGGTTTCAACCTCTTTGACTTGTTGCTGTAAGTCT
TCTTTTTCTTGGGTTAATTGTTG	AATTTGAGTTTGAGATGAAGAAATTTGCTTGTGTAAGTCT
TCTTTCTCTTGAGTTAATTGTTG	GGTTTGGGTTTCAACCTCTTTGACTTGTTGCTGTAAGTCT
TCTTTTTCTTGGGTTAATTGTTG	AATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGCTT
TCTTTTTCTTGAGTTAATTGTTG	AGTTTGGATTTCAACCTCTTTGACTTGTTGCTGTAAGTCT
TCTTTTTCTTGGGTTAATTGTTG	AATTTGAGTTTGAGATGAAGAAAGTTGTTCCTGTAAGCTT
TCTTTTTCTTGAGTTAATTGTTG	AGTTTGGATTTCAACCTCTTTGACTTGTTGCTGTAAGTCT
TCTTTTTCTTGGGTTAATTGTTG	AATTTGAGTTTGAGATGAAGAAAGTTTTTCCTGTAATTCC
TCTTTCTCTTGAGTTATTTGTTG	GTTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGTCT
TCTTTCTCTTGAGTTAATTGTTG	AGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGTCT
TCTTTCTCTTGAGTTAATTGTTG	AGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAATTCC
TCTTTCTCTTGAGTTAATTGTTG	AGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGTCT
TCTTTCTCTTGAGTTAATTGTTG	AGTTTGGGTTTCAAACCCTTTGACTTGTTGCTCTAGGTCT
TCTTTGTCTTGGTTTAATTGTTG	AATTTGAGTTTGAGATGAAGAAATTTGCTTCTGTAAGCTT
TCTTTCTGTTGAGTTAATTGTTG	AGTTTGAGATTCAAACCCTTTAACTTGTTGTTGTAAATCT
TCTTTCTGTTGAGTTAATTGTTG	AGTTTGGGTTTCAAAACCTTTGACTTGTTGCTGTAAGCTT
TCTTTCTGTTGAGTTAATTGTTG	AGTTTGAGATTCAAACCCTTTGACTTGTTGCTGTAAGCTT
TCTTTCTGTTGAGTTAATTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956336.1\|4865668_4866253_-\|DUF4340-domain-containing-protein	unknown	unknown	gnl\|CDD\|379518
NC_011729.1\|WP_015956351.1\|4879785_4880169_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_049858567.1\|4873712_4874273_-\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NC_011729.1\|WP_015956345.1\|4875634_4875883_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956330.1\|4858232_4858850_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226442
NC_011729.1\|WP_015956337.1\|4866425_4868537_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|225766
NC_011729.1\|WP_041238383.1\|4862677_4863046_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
NC_011729.1\|WP_015956334.1\|4863367_4865371_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320697
NC_011729.1\|WP_015956344.1\|4875238_4875583_+\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NC_011729.1\|WP_015956335.1\|4865388_4865610_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NC_011729.1\|WP_015956343.1\|4874449_4874848_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225196
NC_011729.1\|WP_015956339.1\|4869326_4870286_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_011729.1\|WP_015956341.1\|4873220_4873688_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176862
NC_011729.1\|WP_015956346.1\|4876188_4876980_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011729.1\|WP_015956349.1\|4878032_4879076_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NC_011729.1\|WP_015956338.1\|4868542_4869325_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|132557
NC_011729.1\|WP_015956350.1\|4879206_4879557_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184612
NC_011729.1\|WP_015956331.1\|4858965_4859943_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379204
NC_011729.1\|WP_015956332.1\|4860685_4862503_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|226651
NC_011729.1\|WP_015956347.1\|4876974_4877721_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224058

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956336.1\|4865668_4866253_-\|DUF4340-domain-containing-protein	gnl\|CDD\|379518	pfam14238, DUF4340, Domain of unknown function (DUF4340). This domain is found in bacteria, and is typically between 183 and 196 amino acids in length.	6.64671e-05
NC_011729.1\|WP_049858567.1\|4873712_4874273_-\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	1.68002e-25
NC_011729.1\|WP_015956330.1\|4858232_4858850_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|226442	COG3932, COG3932, Uncharacterized ABC-type transport system, permease components [General function prediction only].	6.60493e-68
NC_011729.1\|WP_015956337.1\|4866425_4868537_-\|ABC-transporter	gnl\|CDD\|225766	COG3225, GldG, ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion].	2.94309e-61
NC_011729.1\|WP_041238383.1\|4862677_4863046_+\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	9.49957e-59
NC_011729.1\|WP_015956334.1\|4863367_4865371_+\|M48-family-metalloprotease	gnl\|CDD\|320697	cd07338, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	5.04188e-65
NC_011729.1\|WP_015956344.1\|4875238_4875583_+\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	1.53957e-63
NC_011729.1\|WP_015956335.1\|4865388_4865610_-\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	1.11056e-23
NC_011729.1\|WP_015956343.1\|4874449_4874848_-\|membrane-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	9.94177e-14
NC_011729.1\|WP_015956339.1\|4869326_4870286_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.46125e-104
NC_011729.1\|WP_015956341.1\|4873220_4873688_-\|SRPBCC-family-protein	gnl\|CDD\|176862	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	1.25052e-52
NC_011729.1\|WP_015956346.1\|4876188_4876980_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.30758e-72
NC_011729.1\|WP_015956349.1\|4878032_4879076_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	9.46012e-171
NC_011729.1\|WP_015956338.1\|4868542_4869325_-\|ABC-transporter-permease-subunit	gnl\|CDD\|132557	TIGR03518, ABC_transporter_permease_protein, gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	1.68907e-29
NC_011729.1\|WP_015956350.1\|4879206_4879557_-\|hypothetical-protein	gnl\|CDD\|184612	PRK14298, PRK14298, chaperone protein DnaJ; Provisional.	0.00284786
NC_011729.1\|WP_015956331.1\|4858965_4859943_-\|hypothetical-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	3.71896e-06
NC_011729.1\|WP_015956332.1\|4860685_4862503_+\|alpha/beta-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	1.32667e-60
NC_011729.1\|WP_015956347.1\|4876974_4877721_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	1.98528e-72

>NC_011729.1|WP_015956339.1|4869326_4870286_-|ABC-transporter-ATP-binding-protein
MIEVEHLSKIYGSTAAIQDVDFSVEAGEIVGFLGPNGAGKTTTMRILSGYIPATTGTARIAGYDVHEKSLEVRQRIGYLPENPPLYPDMTVEGFLTFVARIKGVSRSDRKARVNWAIERCQLKEKRKVLIRKLSKGYKQRVGIAHALVHNPPVIILDEPTVGLDPKQITEVRDLIKSLAGEHTVILSTHILPEVSMTCDRVIIINQGKVIATDTPDNLMSQFVSSAGYQIDVIGDITAIQPQLQEIPGILKIEVNPHAPDSDRHLLQITSDSDLELGGDIAKLIVTQGLGLYEMRRIRPTLEDVFIGLITTEESVMEDE
>NC_011729.1|WP_015956338.1|4868542_4869325_-|ABC-transporter-permease-subunit
MILANIIAIFRKELQSYFLSPFFYIIAAFFWLISGVFFGWILDNIIQSVASAEQQGITSPVDIAYEFFNAFLGVIASLFLVLLPALSMGLYAEERKRGTLELLATSPVTNWGVAVGKLLGVITFFTVLLVPLIIYEIIALSAASPPVQLPVILMGHGGLILLAAAILSLGMFISSLTDSAILSYILTFILVVFLWVIDGLGERVGGVLGEILSHLSLFDNYNDLVRGIFNTSSLVLFVSYIILGIFLTAQSIEALRFQRS
>NC_011729.1|WP_015956337.1|4866425_4868537_-|ABC-transporter
MKLKKLLKYLFIPGLTLIAAGITIRLSDANLLTLGTGLLVAGGVILIIWLGFLLISAQGFWGKRSTQVGTNAAISTLSVIAILGIINFLAVRYSTKIDLTENKIYTLSPQSQEIVKSLKEPVKLWLFDNAPSSLDKELLENYRRYNSNFEYEYVNPDQNPGLVRQVGAKSLGDVYLQYRDKKQLVQTLIAFGNKELLSEIKLTNSIEKILRDRTLTVYFLQGHGEHPLDSVEGGLSEAVASLRDKGYKVEPLNLVQRSEIPKDADVIVIAGPKQDLFPQEVETLKNYAAQGGSLFILLDPTVNAGLTPLLEQWGVKLDERIVIDGSGAGQLVGLGPATPLITNYGNHPITKDFQNEMSFYPLARPIDTLEKKGVEATALLLANEQMWAESDLTSDQIAFDETQDISGPFEIGVALTRAFTPAATTPKTDTPKPSPSPTSPEKQPTTEVKPSPSPTSPEKQPTTEVKPSPSPISVQEKSPIEIKPSPSAEEKQQTKQTQKQTEPTPIPDLQIPQTPAPASSPPSNLIDPEQEILDPTSPNSPTPSPSVNREPQKEQQKQVNPSPASSPTPTPKPSPTVSPSPTPKASPQQKQETEVKPSPTPTPTPPKESQPEKEIEARMVVIGNSVFATNGAFEQQLNGDVFLNSVQWLASGDEQPLSIRPREPENRRIVLSKVQASSIFWLSIVVFPLLGFLLAGITWWRRR
>NC_011729.1|WP_015956336.1|4865668_4866253_-|DUF4340-domain-containing-protein
MKIQTTTWVLLTVAILLGGGVYLYETIGKPHQEEVQANENKIFTFREDEIKTLTIDTKGKTLKFEKTNDKNKPWQMKQPEDITASDAAVSFLLNLLVERQRDRSITVPIKQLKDYGLDPSVATITVQLANQKTHKLILGNPDLENLYLYAQIDPPSPTAKETEIVLIPKEFQYAIERDLAEWKEPEPEPPKPEK
>NC_011729.1|WP_015956335.1|4865388_4865610_-|DUF433-domain-containing-protein
MNHQLLKPITHNRDICHGKPCIRGLRYPVEFILELLSSGMTNEEILADYEDLEPEDIQAVKITCRVRSQRTPK
>NC_011729.1|WP_015956334.1|4863367_4865371_+|M48-family-metalloprotease
MLLKDGLKALSEQRYSEAVDLLEEYCQTPNNFNHPNYTQGQKALIRAYYANGQTEKALALCQEIAHDSKSQISQWAKEYLKQQSVNLQSNSNVEEESPKVAQKAARAAQTGVKLVMGGFAGSLALASSVTISLLFGMVLTASFGVIFILESNEPLLGLMISIGLTIIISLASFFISPWIMDLIQTGLYRTRWVTLSEVRRYSPESAEVIERVCREKRLKQPRLGIILDENPTAFTYGSLPNSARLVFSQGLFTYLDDDEAATVYAHELGHIVHWDFAVMTVAATLVQITYLIYVFLNRFSRGGNDDNKIKSAAGQIALVAYIFYLIGTYLILYLSRTREYYADHFAAETTGNPNGLSRALVKIAYGLVEEGKRTEKPSQLIQGTRALGIADPKMASSTGTAYRIASDSSQLGKVFLWDMFNPWGWWMELNSTHPLTGKRIRALTTYAEHLGLDTEFDLASVVREGKGLNKTKLYGTFALDLVLFNAPWLGLILGLMIGGILVNPTGMKVLLISFPLWGFAIGMIAQTLIMYPNFGQAPKTDILSLMSDPYASPLRGRPVRLDCELIGRGDAGYRFGSELKLQDSTGMIFARYASRFGPLGNFLFGGTQVDKLIGSQVKTVAWFRRGIMPWVDLISLKNSNVTVNSYPRFWKFILGGLAFVIGVLILT
>NC_011729.1|WP_041238383.1|4862677_4863046_+|hypothetical-protein
MVQKRLIIEMGMGVDQHGQDPTIAAARAVRNAIAHNALPGVWEVAGLDHPNQMIVQVQVAVPYPEQVRKDEVLAVLPFGKKSLTVEEGGMIVQGRAIEELNDKNDEMLIANAAVTVLIDTDA
>NC_011729.1|WP_015956332.1|4860685_4862503_+|alpha/beta-hydrolase
MTVFWKTLTSPSTLLGSVCTLLFTFGGLGAPPAEAAERLILQIGPLQEEIKIEDLEQFAYTGEISPQLKPYQFLLTPGVQDLLLRRMHVDPVLAEQFFNQLLVSEDGEKLLEQIQTAIPETTVNQLQTSLKEAIKQPDDLNILSFLRVYPSKTLKINLNAGASIATQLGAANLQSKILTPVLAKELNVPPDAGSFSPVDPKSPGPETVYKETFILRDKSRKRTIPADIYYSFNTKGPLVVMSHGFAADRRFLKYLAYHLASYGLTVVSVEHPGSNIHSLVKFPQGMKLNEILPASEFIERPKDISFVLDELEKINQENSYFHDKFNTRQVSLIGHSFGGYTVLALAGGKLNPKQLRSFCQSLTPLGRSPADWLQCSGAQLPYSEVNFRDSRVVGAIALNPIAGHLFGDSLSEIKIPTLILASSEDGITPNLAHQLQPFQQLQGEKYLMVAVGGTHMSVTDISYLSGSMGQSTLVREVMDEEANPLREATQGVSLAFIKQLTPQGKDYQPFLTPAYVQSFKNEQMSLRLATQLPMTLDVTLNVLSLSHEKITLRQPPLKLDLLATIRACFAHLSTPFSPPQYQTGQLEEIFDGLLRTYNRHSGRLS
>NC_011729.1|WP_015956331.1|4858965_4859943_-|hypothetical-protein
MEKNNAKVLIHLGIPKTASTWFQQQIFNNNNLGFTNFIKTKNTPGDRDCLKYFVNCDDFSFFPEMVQKYYETKFSEIYSRGLMPVLTNELLSMSIGGRLMHQKSVSKRIYDTFPQAKIFFFIREQKSAILSIYKQLVKARYNESLESFMNQAMDFEKRTIISINYYMYDRLLECYQENFGRENVLVLPFELFIKNPKETLKKIINFSNASPKVNNLDQYLDEISTSEKINTSLKAGTLALKSRINNVLFYPNPARPDFTKQKVQQKVSNALGKSLDLLIPEQQQKHMETVMKELVKQKVGNTFQESNRKTSQLIGIDLADFGYLT
>NC_011729.1|WP_015956330.1|4858232_4858850_+|exopolysaccharide-biosynthesis-protein
MAKLSVELNRYFFEEERASDVKIGDILTLAGERIFGFLLVILSLPSALPVPAPGYSIPFGILIFLLAVQLIFGAKTPWMPAKMMQGSMKLETVQKFVKMGLPWLRRIEALTKPRLTYICISLPGRIIIGVAIALMAISMMIPIPGTNTLPAMGIFVTAFGLQEDDGFISLAGLFICLMAGILSTSIIIATIWGGVSLLDWIKSQF
>NC_011729.1|WP_015956341.1|4873220_4873688_-|SRPBCC-family-protein
MLKFEYSSLIDAPIEIVWNFHERQDILQLLTPPWQPVEIVRREGGLDVGAITEFRILLGPIPVRWVARHIECEKYKLFSDQQIDGPMQSWIHRHQFSQELGKTRLTDSISYEIPGGWLVELLLGWWVESRLNDMFQYRHQVTQRECKKIADYQYN
>NC_011729.1|WP_049858567.1|4873712_4874273_-|ComEA-family-DNA-binding-protein
MNRPRWLSTAKEFTQKLNPQHQIIRQKIKNDPYYRFQSLEEITIARELGIKIDVNQASVDDWLRLPGISIHQARILVKLVGMGVELLSIEDVAAALSVPVRRLKPLEPILDFCYYDPESLLNPQRINLNQAHVKQLEQLPFLSPTLAEQIIADRHQKGDYKNIVDFQQRLNLSGEIISQIMHYLIF
>NC_011729.1|WP_015956343.1|4874449_4874848_-|membrane-protein
MFEDLFNKPKNRKIAVFLALLGSVLVLPIPIAGIHKFYLGQPLWGILYLVLWQTPIPKIACAIDAVWYLVQDSQQFNVYFNLKQSINDSRSDPSQIKALASALRELDQLRAEGLLSEYEFEQKRRQLLEHIS
>NC_011729.1|WP_015956344.1|4875238_4875583_+|Grx4-family-monothiol-glutaredoxin
MTPENQTLTPEVKARIDKLVKDNKILVFMKGNKLMPQCGFSNNVVQILSVLGVPFETVDVLADFEIRQGIKEYSNWPTIPQVYINGEFVGGSDIMIELYQSGELQEMVEVALAS
>NC_011729.1|WP_015956345.1|4875634_4875883_-|hypothetical-protein
MLQDTQTIRYYQKLTDALVDMWNRGHRYEEMRSYMDGFIACLRMTNIVEPYIIHRLEEDAYRFLRDPSNFEMALPQPEPDYY
>NC_011729.1|WP_015956346.1|4876188_4876980_+|response-regulator-transcription-factor
MGLVYISIVEGNPHLRSLLAWHLQQSGYLVQQFANLQQAKQAFFHRQPTLVIIDSDLPDGDGLELCEWLYKQRQSLILVLSARNGEKDVVTGLQAGADDYLRKPFGMQEFMARVEVLVRRLRVSSAPLHLDYGALKIDLAQRRVQYKGEYIELTPQEFSLLYVLAQADGAPLTRSELLRRAWPEAIDNPRTIDTHVLSLRKKIETDPRQPSLIQTVRNVGYRFNIETLEELNSSPSPAAIAPSNGIPSHSNGSKMEKIAVKSS
>NC_011729.1|WP_015956347.1|4876974_4877721_-|ATP-binding-cassette-domain-containing-protein
MANLLELEDVSLVLPRGSLSLLENISFRVEKGDRLGIVGSSGAGKTTLIRLLNRLDDPTSGLIKFEDKPLTQIPVIQLRQRVVLVPQEPKLLGMTVEDTLTYPLRLQHLSKGEIQQRLDHWTSRLSIPSQWFERNELQLSVGQRQLVAITRGLMMHPQILLLDEPTSALDIGKGNHLIEVLIEVSDTTQTAIIMINHQLELVRQFAQRVLYLSQGKIVQLTIASQVNWEHLQEQLKQAPNQTALFDDL
>NC_011729.1|WP_015956349.1|4878032_4879076_+|anthranilate-phosphoribosyltransferase
MTPEIIPNWSELLQQLLDRQSLTQNQAAQLMQGWLNEAIDPVLSGAILAAIQAKGVSAEELAGMAQVLQAQSSYQNSLTHTQPVIDTCGTGGDGASTFNISTAVAFVAASAGVKVAKHGNRSASSKVGSADVLEFLGINLTASSEKVEAALSEVGVTFLFAPGWHPALKSVAPMRKTLKIRTVFNLLGPLVNPLRPTGQVIGVYDRQFLTPMAEALLKLGTPKAIILHGREKLDEAGLGDLTDMALLGQEQVHVCSLNPEILGLTPAPISALKGGDVEENATILRNVLQGKGTQAQQDAVVLNAALALQVGEVVAFEAHHQGIAKAREILSSGAAWEKLLELVKFFK
>NC_011729.1|WP_015956350.1|4879206_4879557_-|hypothetical-protein
MKSTIIVGLSALLLSGITALPASAQYPENQTYPDRSYDIRREEAFNLVSSAYRGAFEEQGIPSYYRLQHAYQAGEVTAEEVIRGAIRAGELSPQAIEDEDYVSAVEFQLNALTQAN
>NC_011729.1|WP_015956351.1|4879785_4880169_+|hypothetical-protein
MFLIDIFFAFTIATVLTLIFSVGLRRTGPWDNVIIFFIVLFLSTWAGGLWIIPLATPLWGGNWLIFLYTGLIIALLLAVTTPKPSSTTEIKTQRNFKAQKKTTSALKVFFWVWIILLVMAITISYLT

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Crispr_ID: NC_011729_40

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_40

4916091-4916174

Orphan

N:A

Consensus_repeat	Method
CTGCGATCGCTTAATAATTGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_40

>merge|NC_011729|40|4916091-4916174|CRISPRCasFinder
CTGCGATCGCTTAATAATTGATTCTTTTTTGTAGGATGCGTTCCCAACGCATCTCTTTAACTTGCGATCGCTTAATAATTGATT

>NC_011729|40|37|4916091-4916174|CRISPRCasFinder
CTGCGATCGCTTAATAATTGATT	CTTTTTTGTAGGATGCGTTCCCAACGCATCTCTTTAAC
TTGCGATCGCTTAATAATTGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956392.1\|4928546_4929491_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176228
NC_011729.1\|WP_157867645.1\|4922742_4923702_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|226985
NC_011729.1\|WP_015956394.1\|4930345_4932289_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NC_011729.1\|WP_015956377.1\|4905387_4908960_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274009
NC_011729.1\|WP_015956381.1\|4912996_4914049_+\|polysaccharide-pyruvyl-transferase-CsaB	unknown	unknown	gnl\|CDD\|132648
NC_011729.1\|WP_015956386.1\|4918768_4919458_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_011729.1\|WP_015956393.1\|4929565_4930201_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188643
NC_011729.1\|WP_015956387.1\|4919723_4921916_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|237862
NC_011729.1\|WP_015956380.1\|4911039_4912845_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_011729.1\|WP_015956395.1\|4932352_4933000_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015956375.1\|4904750_4904954_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956379.1\|4910224_4910752_+\|flavodoxin	unknown	unknown	gnl\|CDD\|236439
NC_011729.1\|WP_015956376.1\|4905145_4905370_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956378.1\|4909217_4909469_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956382.1\|4914265_4914919_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|215413
NC_011729.1\|WP_015956385.1\|4916408_4918586_-\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227922
NC_011729.1\|WP_015956383.1\|4915080_4915497_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373312
NC_011729.1\|WP_015956374.1\|4903507_4904665_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956390.1\|4924034_4927838_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|182070
NC_011729.1\|WP_015956388.1\|4921904_4922567_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956392.1\|4928546_4929491_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176228	cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	4.01214e-144
NC_011729.1\|WP_157867645.1\|4922742_4923702_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	2.97255e-19
NC_011729.1\|WP_015956381.1\|4912996_4914049_+\|polysaccharide-pyruvyl-transferase-CsaB	gnl\|CDD\|132648	TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	8.77363e-141
NC_011729.1\|WP_015956394.1\|4930345_4932289_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_011729.1\|WP_015956393.1\|4929565_4930201_-\|hypothetical-protein	gnl\|CDD\|188643	cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea. Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.	1.59851e-71
NC_011729.1\|WP_015956387.1\|4919723_4921916_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|237862	PRK14948, PRK14948, DNA polymerase III subunit gamma/tau.	0
NC_011729.1\|WP_015956380.1\|4911039_4912845_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.88201e-174
NC_011729.1\|WP_015956395.1\|4932352_4933000_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.59556e-17
NC_011729.1\|WP_015956379.1\|4910224_4910752_+\|flavodoxin	gnl\|CDD\|236439	PRK09267, PRK09267, flavodoxin FldA; Validated.	2.32107e-73
NC_011729.1\|WP_015956382.1\|4914265_4914919_-\|HAD-IA-family-hydrolase	gnl\|CDD\|215413	PLN02770, PLN02770, haloacid dehalogenase-like hydrolase family protein.	1.22539e-52
NC_011729.1\|WP_015956377.1\|4905387_4908960_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NC_011729.1\|WP_015956385.1\|4916408_4918586_-\|NACHT-domain-containing-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	2.40118e-59
NC_011729.1\|WP_015956383.1\|4915080_4915497_-\|hypothetical-protein	gnl\|CDD\|373312	pfam14812, PBP1_TM, Transmembrane domain of transglycosylase PBP1 at N-terminal. This is the N-terminal, transmembrane, domain of the transglycosylases ()penicillin-binding proteins), the multi-domain membrane proteins essential for cell wall synthesis that are targeted by penicillin antibiotics. The TM domain is a single helix, several of whose residues lie in close proximity to hydrophobic residues in the TGT domain. The TM helix seems to be necessary for stabilizing the protein-membrane interaction, and the resulting orientation limits the interaction between PBPb1 and lipid II in the membrane in a 2D lateral diffusion fashion.	0.00213443
NC_011729.1\|WP_015956386.1\|4918768_4919458_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.88801e-16
NC_011729.1\|WP_015956390.1\|4924034_4927838_-\|PAS-domain-S-box-protein	gnl\|CDD\|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	2.21609e-45
NC_011729.1\|WP_015956388.1\|4921904_4922567_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.12973e-17

>NC_011729.1|WP_015956383.1|4915080_4915497_-|hypothetical-protein
MKLSKIDLSKIIAVNHNQDKLGLLIDRGSEVEYLEVPAPKVAYQGLNQVANLANNPPSLADNSLLALDHSTLSNPLNTTHQPSSVSYSASIEIDENKKVLKVELTCQLEYSLEELDDYEEEYDDFEDYFYDEEEEEIC
>NC_011729.1|WP_015956382.1|4914265_4914919_-|HAD-IA-family-hydrolase
MLSAILFDLDGTLANTDPLHFLTWKEILTQFDLFIDEEFYNQRISGRVNEVIIKDILPQLSEKEGLELAEKKEAQFRELAHNLEPMTGLMRLLDWSKSRQIKQAVVTNAPRKNAEFMLNALRLKKIFPILILAEEAPKGKPDPAPYQLALERLGVSASEAIAFEDSPSGVRSATGAGIFTIGVNSTHDSNYLLEAGAKWVIKDFSSSQLWEWLQQFY
>NC_011729.1|WP_015956381.1|4912996_4914049_+|polysaccharide-pyruvyl-transferase-CsaB
MRAVICGYYGRGNGGDEALLVSLLQMLPQEVTPIVLSNNPPQTHQRYGVETCPARSAFSLLRTLKKSDMFIWGGGSLMQDVTSFASPFYYAGVMGLAQQLRLKTVAWAQGIGPLKRATTQWLTKQALQGCTAVSVRDSQSAKLISQWDISPLIAPDPVWALESKPVQGLWDLPAPRVAVNLRAHPLLTAKKLEILTQALVDFQKATQTFILLVPFQKSQDLAIARSISDRLPPSHKIIELEDPRQLKGLFKGVEMTIGMRYHSLIMAGAEECRCFALSYDPKVSRLMKELDIPGWELDQLPDDANLISTAWLEHYVNGDALSQVQIHSLIDRAFMHRELLQSVIDFNLNL
>NC_011729.1|WP_015956380.1|4911039_4912845_-|ABC-transporter-ATP-binding-protein
MSQQQKSKQSPHPLVRLMKYGRRYRVLIWQAVTCSIFNKIFDLAPPALIGAAVDVVVQRQDSIIAKLGITDIFGQLLFLSVLSALVWGLESLFQYTYERLWRNLAQNIQHDLRLDAYSHIQDLELAYFEDRSTGTLLSILNDDVNQLERFLDIGANEILQVITTVIIISGAFFILTPNTAWMAMLPIPFILWGSIAFQNLLAPRYGDVREKVSLLNSRLANNLSGITTIKSYTTERYEIERLRVDSEAYRQSNQRAIKLSAAFVPLIRIIILAGFTAILLFGGMEVVEGRLAVGTYSVLVFLTQRLLWPLTRLGQTLDLYQRAMASTNRVMNLLDTPIAIHSGNIALPVSTIKGEIVLDNISFAYQERYPVIENLSLHIPAGKTIAIVGSTGSGKSTLVKLLLRLYEVQRGRITLDGIDINDIILYDLRRGIGLVSQDVFLFHGSVRENIAYGSPDATIDDIMMAAKAAEAHEFIIKLPQGYDTIVGERGQKLSGGQRQRISIARAILKDPPILILDEATSAVDNETEAAIARSLEKITQNRTTIAIAHRLSTIRHAECIYVLEYGQIVERGTHEELLEKEGIYANLWRVQTGIRQLGLTH
>NC_011729.1|WP_015956379.1|4910224_4910752_+|flavodoxin
MSKIGIFYGSTSGITEEIAQKLRVLFGEQLCDIYSMEEDFDEYGQLLDYDYLLLGCSTWGAGEVQNDWREPLFEMELEKPDFTGKTIALFGAGDQVSHGQDFVSALGTLYQHFQKLGATLVGDYPTDGYDFKHSNALHDGKFVGLPIDEINQSELTEERINQWVESLRPVFIGSN
>NC_011729.1|WP_015956378.1|4909217_4909469_+|hypothetical-protein
MSELNPTISLTSSLYEQVTALAKQLQIPPTQVVMLAVEEYLRHYQDYQAKQLMNSWNEAYSDGLDESETLTLEAMRRHQGQLP
>NC_011729.1|WP_015956377.1|4905387_4908960_-|chromosome-segregation-protein-SMC
MVHIKRVELSHFKSFGGTTSIPFLPGFTVISGPNGSGKSNILDALLFCLGLATSKGMRAERLPDLVNHNHTNGRKTTEASVSVTFDLSDVSGEDDTNKTEPLTEWTITRRLRVTQGGNYSSTYYINNQPCTVNELHEQLNRFRIYPEGYNVVLQGDVTRIITMNSRERREIIDELAGVAEFDRKIDKTKETLESVREREERCRIIEQELKRSLDRLASDRVKAEKYKKLKAEIQEKQQWEIVLQVRLLQTQHQQLESQISNGDTQITQFQTQLDTLNTQIEQTTTTLNQLNTQVKALGEEEQLSVASQLATQKAKRHQLQLQQQQIETIIQQHHTNQDQTKIDLQQYQQSLSEIIDQKTQLNTETIPHLMGQRDHTRNTLEQTKTKSLQIATASEAWVQEQTSLSHKIGELQDTLNPYRTEQAQLTERHQRLQKTIDEQTPRLESTETELTSKKIELTGLTETLTITQEEIKTLAQQLTLAEHDRTIQQDTQKRLLKEQRDKQRELDKLEATQQAQQEAQGTYATQIIVQSDLPGVCGIVANLGEVDPQFQLALEIAAGGRLGHIVVEDDSIASAGIALLKQKRVGRATFLPLNKIYSPKLPDISNLRFAKGFIDLAVNLINCHPRYNTIFAYVFGNTIVFETIDEARHYLGKYRIVTLDGDLLELSGAMTGGSKPSRGSIRFGTVSTKDSEDIETLKRRLSDIDQMLTRTEELIAQKTEIVNNLSQNLTEARQKERELFLQSKQLQKDIDRLTGQKEELTLSLSQNNQELETVTRRLEELTQHIPSLEAQLQQAQRQLIELEASQTHSEWLEIQAHIKAQETQLQQQEHTLRQAEETLKDLETQTQRLEEKITESQQRLESLQNQTFTINHQEAELKQQILNSDQIIAETEILLHQLTEKLGETKKERDRTETSLRALQTQHQQTAWNLEKLLQTQQERKVTLESLKNQLETQRLELPDPIPELPEFILNQENLSQYLEQLQTDIKNGQKRLEGMEPVNMLALEEYERTKERLDELSEKLSTLEAERTELLLRIENFTTLRFRAFKEAFDAVNENFQSIFATLSDGDGYLQLDNNEDPFSGGLNLVAHPKGKPVQRLSSMSGGEKSLTALSFIFALQRYRPSPFYAFDEVDMFLDGANVERLSKMIRQHSEQAQFIVVSLRRPMIEAAQRTIGVTQARGAHTQVLGIKL
>NC_011729.1|WP_015956376.1|4905145_4905370_+|hypothetical-protein
MEKQQTLTVFPDKKEPKLNLLALVFFMMGALPLYVQFQGGNNEGHIESGRDKNRLFKITLLAVLVGATLEMFVF
>NC_011729.1|WP_015956375.1|4904750_4904954_-|hypothetical-protein
MLYWGYIAGRSNTSIFQVDELEEATEKLVSYCETNASQPVFAAIEATKQCYLKLSAEEKQKAVSVIG
>NC_011729.1|WP_015956374.1|4903507_4904665_+|hypothetical-protein
MTTELNEKKSVRLILHPGHGKCGSSSIQSFIYSNVAQLEAQKIYVSDANFRFSFETEKSSLIWKFPLLYFRDLIDGRKDITVFEQRLKTIINEAKKSDCEAIIISSENLIGLDWGNGSCQKIHKILSQYFSDITVIYYIRRQEDYLISAWQQWRYQGGEKLKDSIFHFLNIHRPDFLVTAKFFEDVYGANSLQVIPLNKEALVGGKLITDFCHRAGINIENNVDYYSNPSLNPYLCDILARIPNIFLYHLNDYFPKHTHENYEIQRILHKNLSSKDLFWSNDKTILDDETKEAIMKHFEKDNRELHQAYFDYIPYEKVFGLEKSANSQNLEYQLDKLKDVVAIQMEIILKLLIEKEEQEKNNFQRKLKDKIKKIFKRMKKKLNFS
>NC_011729.1|WP_015956385.1|4916408_4918586_-|NACHT-domain-containing-protein
MTGIEPILIDGAAKAFGGIVIKTAWDKGGKMLNELLENLDENLKTLIYKASRQYIKNYTERHGILKVLGMREPVSLDSLYITVQIIAERDINNLATLDAVESNYRQNNQRRFRSEKKEKKPGIEVANQTQYLMVLGEPGAGKSTFLRKMGLEALKGNKGEYKHSCLPVFLELKRFTEPNIDIKSILINEFEICGFPNPDKIIENGLEQGKLLILFDGLDEVPKNNLTTVIKTVKDFVDQYSKNRFIISCRTAAYQSFPRFTDLTIAEFDDEQIEQFIRNWFNSEEDKNNKTADKCWGKLQHKDYEAAKELAHNPLLLTFLCLVYQRSQDLPKNRSRLYAKALRILLEEWAADKQIERDPIYEGLHTELEEILLSEIAYNSFEQDQLFFEKRDIVKQIKGFLAGNLNAPQHLNGEAVLKAIAIQQGILVERATDIYSFSHLTLQEYLTAQYIVDHNQINDLVSNHLTEKRWKEVFLLVAGLMNRGADELLLLMEKKAQQYLLTPTGFQRLAPILHWAEKITTGSSGTLKPSQKRAIAYAYVYAHAYVNVYANPYANSNTLDYANAYARFYALFYAHANAYANAYANAHANDLPYANVYAGSNPLDYANPYALYKFISVAKILQRDGIYHGVNFEALITQLEALKTRIPDEQESTEVKKEFRNQLVNTWLTAFHLNLELVNLSGKEVAEIDQQYFYIYWLMLQCKEAAVRVSPQVWEGIEDRMLRVV
>NC_011729.1|WP_015956386.1|4918768_4919458_-|Uma2-family-endonuclease
MVGQISHEGSNQIIYPDSDGQPMADNTKQFRWIMVIKENLELLFAEEEDVFVAGDLLWYPVEGSPTLRQAPDVMVVFGRPKGDRGSYKQWEENNIIPQVVFEILSPGNRLREIIRKFRFYENYGVEEYYIYDPDKVELEGWIRSNNILEVIEEMNNWISPRLGVRFELKDDSLELYRPDGEKFLTFVELAKLRKEDQKKAEEALRKLEQEKEKVKKLEARLRELGVELE
>NC_011729.1|WP_015956387.1|4919723_4921916_+|DNA-polymerase-III-subunit-gamma/tau
MSYEPLHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAKSLNCLSSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRIPLEDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDAESLLDQLSLLSGTITPARVWELVGAIPELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTAPTRSDLVAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWLEVTLLGLLSLGVVSKPSLEEKPVNGNNGKNGKGHHSSVQAPSISPNSQIISPPPQPKPEPKVDPVQESSPPQTTPEKPKTTEQNIQPSEDLEKLWHQVLDQVEPPATQALFSQQGHLISFDGSVAIIGVNSQNLFKLYQERISALETALKAIFQKFVKVNIQITNVNQAPEIPKETPSLNPISSRQIEPIKEVAQPQSTPSPDEEETFTNNGKSPQVDPPSSPEPESLSPSQEEITITQDEPEILDPVEENTLDESKNEINKACELLIKAFEGELIENQEIFLSEKSEMNIDKPLSNSPVTPIINTTPIPESNSEQIPDEIQEKNLSNDDIITLNESHDLVEIQTEQEAQNQEYKPQIIPEIKGRPDISNLPEDELDF
>NC_011729.1|WP_015956388.1|4921904_4922567_-|TetR/AcrR-family-transcriptional-regulator
MTHSPQKPSLKKLRPPQRDAQATQEKILEAAEREFSRHGLKGARIGEIAQNSGVTTAMIYYYFQSKEGLYKAVLERPALEVQEIMSGLNLDQKPPIEALKAFIEAAIAYEAKHPHRGMLWFQEANQNGGEYFKLNKGSWSGIFAYINAILERGMADGSFRQLDPLVTIVQILGICIFYFNIHENWKHFMPDYDRLSPEAVNKHTQEAIDLILNGVKASKI
>NC_011729.1|WP_157867645.1|4922742_4923702_+|Rieske-2Fe-2S-domain-containing-protein
MLVGAPWLLGHRSMLGINQPKKVSLYGLDYVIWQEPNGKINALPNACPHMGAMLSEGWCETKNKDNSVVVCPFHALEFDSQGCTVLPGSNKKTLPQLKPLELMIEGDFIWSYGGYEPKISLPKILNEIAAKYEFIGYTGDTSVKTDLLSMLLNMHDYNHQNGTHRELFRIIEVQFKEFIDDGYSSHAFYDNITVPYQFWEKVQKPELFMIPKVIEAHLENHFPSLVIFYGNFPGGKLAQCHFFVPESETQTRTYVLMFAQTKNPVFKLLKNRILNLAKVVVEQDTDILGKIYANVPQKIKLNNEIGMDWVRRNFKTFSE
>NC_011729.1|WP_015956390.1|4924034_4927838_-|PAS-domain-S-box-protein
MLTHYRPQTQRYSIAVLSVIIALGLMLLLDPWMPMETSPFLVFFVAVTVSAWYGGIKPGLVATFLSAIASYYWFFIPKETWDISTADAFRLMIFILECILISILCEALHQAKRKVEINLHSLQQKESMLEKANTQVSRILESIGEGFFALDYQWNFTYINNPGEIIFKQSRQTLEGKNIWQILPEIEGTVYEQFHRAIKEQIPICLEQNIFTESNQFYEIRAYPVSEGLAVYLLDVTERRLAALQLKESELRFRQLAENISKVFWISDLEKSEILYVSPAYERIWGKSCESLYQYPSSWLEAVHPEDRNRVNLAISQMKNGEQDFKEDYRIIRPDGQIRWIGARTFPIYDENGKRYRIAGFAEDITERKRAEQALQESERRFRRLVESNLFGVAFANIAGRLHYANDYYLNMVGYSREDLENGLIQWNQMTPPEWLDLDFKALEEMKVKGVTTPFEKEYLRKDGSRVPILIGAAFLDEPYEIAQEMIGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVDSHQRYRFNNRRYEEWFGVPIDQISGKTLQEFLGDSLYEKVRPRIEKVLKGEQVIYEEEITLPNSESRYIRANYMPRFDSQGKVEGFVALINDFSDRKRMEDNLRESEERFRMMANSSPVMIWLTDETAGCIFVNQTWLNLTGRTLEQELGEGWTDNIHPEDLSYVLEDYLQAFNTRQPYEMQYRVKSANGDYRWILERGSPRFTPEGKFSGYIGSCTDVTERQQAIQALQQSEQALQQHAQMLDLANDSIIIRDLNEAIAYWNHGAERLYGWTKTEAEGHQIHNLLKTIFPQPKTEIYSILTRQGYWQGELTQTKQDGSQIIVSSRWTLQYNSQGQAIAILEISDDITERKQVEAALRVSEERFRAIFEQAAVGMSLLNLDGRWLRVNQKLCEITGYTQEELLQKTFQDITYPEDLETDLNYVSKLLAGEIETYSLEKRYIRQDKSLIWVEITVSLMWDQTQSKSSSKVPKPQYFITVIEDISEAKRGEIERQQAQIALQERAKELTSLNTVLASTTTMLQKRNQELDQFAYVVSHDLKAPLRAIANLSEWIEEDLEGQLPPENQEQLQLLRQRVHRMENLINGVLEYSRVGRKETKIETFSVDELLTEVIDSLSPPPTFTVEIGEGMPTLTTSKVFLAQIFSNLISNGINHYPGSDGHLWIRVKELDKFYEFAVADNGKGIAPEYHQRIFGIFQTLEKSENLESTGIGLAIVKKIIEYQGGNIKVESELGQGTTFRFTWPK
>NC_011729.1|WP_015956392.1|4928546_4929491_+|NAD(P)-dependent-alcohol-dehydrogenase
MKAVVINRYGSADVLEYKEVEKPIPAADQVLVKVMASSVNPVDWKIRQGDLQLLSSFGGFPRLGCDFAGVVEAIGNEVKSFKVGDEVYGLANPLSGGAYAEYITISESSMALKPNQATFEQAAAIPVAGLTAFQSLIELGQLQPGYQVLVNGASGGVGTFAVQIAKALYAEVTGVCSGKNREFVLGLGADFVIDYHQEDFTKQVKQYDLILDAVGKSSFQKCQPVLKPQGIYISTLPSVDTFLAIGQTFFFSGQKAKIVLAQPRRQDLNGLSQLIDQSKVKVIIDRVYPLSEIAEAHRYSETGRAVGKIVLSVP
>NC_011729.1|WP_015956393.1|4929565_4930201_-|hypothetical-protein
MIYLDSALITEAEIALKFGWVKGITTNPTLLAKSDLSPQETLKKLAAISPGELYYQLTATNFEEMIAEGQQAFQLIGSKTVLKVPATEVGFQVVASLSKNIPCSVTAIYSAAQAAVAYQAGAKYAIAYVNRATRLLGDGLQLVREMAAVLQGTGVEILAASLKSPQEAADALQAGADHLTVPLTLLQAMTTHELSQKTVEDFNQQGRGILS
>NC_011729.1|WP_015956394.1|4930345_4932289_+|ABC-transporter-ATP-binding-protein
MNEPVLEVRNLQVKFTNDHQDVLAVDEISFSVNRGEVLGIVGESGSGKSVTSLAVMGLIPTPGKISGGEIWFRTENEAKPVNLLNVDENIRREYRGGQIAMIFQEPMSSLNPVYTIGFQITEAIRLHQRVNQEQAECQAIDLLQEVKLLASDEQLQEQYLNKIQSTYNPQQGSPQLTQEIKTYIAQQKQAILKRYPHELSGGQLQRVMIAMAISCNPTLLIADEPTTALDVTVQATILNLLRHLCKERNMSMMFISHDLGVIANIADQVAVMYRGKIVENGSIGQILVNPHHPYTKGLLNCRPEIDKVVKKLATVSDYMEEVKDPVTGEMSIEPKQGVTVSSISESEEKQRLIKEQQKRLEKLQKQEDILSVENVRVYFPVKGVFGKAKDVFKAVDDVSFIVKRGETLGLVGESGCGKSTLARTILRLIPSTGGTIKFRSNDSGWEEISKLSINDKRLRRLRQNLQIVFQNPYNSLNPRLTIGQAIMEPMVIHKNPKWATQKQKIERVKMGLERVKLNPNWYNRYPHELSGGQRQRVCIARAIILDPKFIICDESVSALDVSVQAEVLNLLKDLQQEMGLTYIFISHDLSVVKFMSDRIMVMNRGQLEEMGTADEIINHPQKEYTQRLIASIPKFPEELKQSTNQMR
>NC_011729.1|WP_015956395.1|4932352_4933000_+|Uma2-family-endonuclease
MTPTAINLPLEAGQNITLSPVSWSRFEQVLAELPQRRLSRLAYANKILEIMTPLPEHERAKIVLADLVKTLLRLQKRPWEALGSTTFKRQEMAVGVEPDECFYIQNYQAVIGKDTLDLNSDPPPDLAIEIDVTSITKQAAYLTLKVPELWIYTQGKLTIYIFQEDQYQLSNNSLIFAGIPIIELIERFMKRAKIVGVSQMLLEFEEYVNNLLLKK

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Crispr_ID: NC_011729_41

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_41

4916758-4916979

Orphan

N:A

Consensus_repeat	Method
GCGTAGNNGTTGGCGTAG	CRT

5 spacers

The CRISPR arrays of NC_011729_41

>merge|NC_011729|41|4916758-4916979|CRT
GCGTAGGGGTTGGCGTAGTCGAGGGGGTTGCTGCCGGCGTAGACGTTGGCGTAGGGGAGGTCGTTGGCGTGGGCGTTGGCGTAGGCGTTGGCGTAGGCGTTGGCGTGGGCGTAGAAGAGGGCGTAGAAGCGGGCGTAGGCGTTGGCGTAGTCGAGGGTGTTGCTGTTGGCGTAGGGGTTGGCGTAGACGTTGACGTAGGCGTGGGCGTAGACGTAGGCGTAG

>NC_011729|41|11|4916758-4916979|CRT
GCGTAGGGGTTGGCGTAG	TCGAGGGGGTTGCTGCCG
GCGTAGACGTTGGCGTAG	GGGAGGTCGTTGGCGTGGGCGTTG
GCGTAGGCGTTGGCGTAG	GCGTTGGCGTGGGCGTAGAAGAGGGCGTAGAAGCGG
GCGTAGGCGTTGGCGTAG	TCGAGGGTGTTGCTGTTG
GCGTAGGGGTTGGCGTAG	ACGTTGACGTAGGCGTGG
GCGTAGACGTAGGCGTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956392.1\|4928546_4929491_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176228
NC_011729.1\|WP_015956396.1\|4933195_4934293_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NC_011729.1\|WP_157867645.1\|4922742_4923702_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|226985
NC_011729.1\|WP_015956377.1\|4905387_4908960_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274009
NC_011729.1\|WP_015956381.1\|4912996_4914049_+\|polysaccharide-pyruvyl-transferase-CsaB	unknown	unknown	gnl\|CDD\|132648
NC_011729.1\|WP_015956394.1\|4930345_4932289_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NC_011729.1\|WP_015956395.1\|4932352_4933000_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015956393.1\|4929565_4930201_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188643
NC_011729.1\|WP_015956387.1\|4919723_4921916_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|237862
NC_011729.1\|WP_015956380.1\|4911039_4912845_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_011729.1\|WP_041238386.1\|4915651_4916104_+\|phosphatase	unknown	unknown	gnl\|CDD\|350353
NC_011729.1\|WP_015956375.1\|4904750_4904954_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956379.1\|4910224_4910752_+\|flavodoxin	unknown	unknown	gnl\|CDD\|236439
NC_011729.1\|WP_015956376.1\|4905145_4905370_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956378.1\|4909217_4909469_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956382.1\|4914265_4914919_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|215413
NC_011729.1\|WP_015956383.1\|4915080_4915497_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373312
NC_011729.1\|WP_015956386.1\|4918768_4919458_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_011729.1\|WP_015956390.1\|4924034_4927838_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|182070
NC_011729.1\|WP_015956388.1\|4921904_4922567_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956392.1\|4928546_4929491_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176228	cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	4.01214e-144
NC_011729.1\|WP_015956396.1\|4933195_4934293_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	1.36616e-27
NC_011729.1\|WP_157867645.1\|4922742_4923702_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	2.97255e-19
NC_011729.1\|WP_015956381.1\|4912996_4914049_+\|polysaccharide-pyruvyl-transferase-CsaB	gnl\|CDD\|132648	TIGR03609, S_layer_CsaB, polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	8.77363e-141
NC_011729.1\|WP_015956394.1\|4930345_4932289_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_011729.1\|WP_015956393.1\|4929565_4930201_-\|hypothetical-protein	gnl\|CDD\|188643	cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea. Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.	1.59851e-71
NC_011729.1\|WP_015956387.1\|4919723_4921916_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|237862	PRK14948, PRK14948, DNA polymerase III subunit gamma/tau.	0
NC_011729.1\|WP_015956380.1\|4911039_4912845_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.88201e-174
NC_011729.1\|WP_041238386.1\|4915651_4916104_+\|phosphatase	gnl\|CDD\|350353	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982. This subfamily is composed of bacterial tyrosine-protein phosphatases similar to Neisseria meningitidis NMA1982, which displays phosphatase activity but whose biological function is still unknown.	2.94395e-67
NC_011729.1\|WP_015956379.1\|4910224_4910752_+\|flavodoxin	gnl\|CDD\|236439	PRK09267, PRK09267, flavodoxin FldA; Validated.	2.32107e-73
NC_011729.1\|WP_015956395.1\|4932352_4933000_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.59556e-17
NC_011729.1\|WP_015956382.1\|4914265_4914919_-\|HAD-IA-family-hydrolase	gnl\|CDD\|215413	PLN02770, PLN02770, haloacid dehalogenase-like hydrolase family protein.	1.22539e-52
NC_011729.1\|WP_015956377.1\|4905387_4908960_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NC_011729.1\|WP_015956383.1\|4915080_4915497_-\|hypothetical-protein	gnl\|CDD\|373312	pfam14812, PBP1_TM, Transmembrane domain of transglycosylase PBP1 at N-terminal. This is the N-terminal, transmembrane, domain of the transglycosylases ()penicillin-binding proteins), the multi-domain membrane proteins essential for cell wall synthesis that are targeted by penicillin antibiotics. The TM domain is a single helix, several of whose residues lie in close proximity to hydrophobic residues in the TGT domain. The TM helix seems to be necessary for stabilizing the protein-membrane interaction, and the resulting orientation limits the interaction between PBPb1 and lipid II in the membrane in a 2D lateral diffusion fashion.	0.00213443
NC_011729.1\|WP_015956386.1\|4918768_4919458_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	1.88801e-16
NC_011729.1\|WP_015956390.1\|4924034_4927838_-\|PAS-domain-S-box-protein	gnl\|CDD\|182070	PRK09776, PRK09776, putative diguanylate cyclase; Provisional.	2.21609e-45
NC_011729.1\|WP_015956388.1\|4921904_4922567_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.12973e-17

>NC_011729.1|WP_041238386.1|4915651_4916104_+|phosphatase
MQEIKNYYWVNQYLATSGQPTPEQFKIIQDAGYDVVINLALPTSDYAIVNEGAIVTGLGMVYVHIPVVWEAPKLEDIRLFFGVMESLSGRKVWVHCALNMRVSCFVYLYQKLKLNLPEEQASYPMSEIWQPNEVWTQFIEDVKGALSAIA
>NC_011729.1|WP_015956383.1|4915080_4915497_-|hypothetical-protein
MKLSKIDLSKIIAVNHNQDKLGLLIDRGSEVEYLEVPAPKVAYQGLNQVANLANNPPSLADNSLLALDHSTLSNPLNTTHQPSSVSYSASIEIDENKKVLKVELTCQLEYSLEELDDYEEEYDDFEDYFYDEEEEEIC
>NC_011729.1|WP_015956382.1|4914265_4914919_-|HAD-IA-family-hydrolase
MLSAILFDLDGTLANTDPLHFLTWKEILTQFDLFIDEEFYNQRISGRVNEVIIKDILPQLSEKEGLELAEKKEAQFRELAHNLEPMTGLMRLLDWSKSRQIKQAVVTNAPRKNAEFMLNALRLKKIFPILILAEEAPKGKPDPAPYQLALERLGVSASEAIAFEDSPSGVRSATGAGIFTIGVNSTHDSNYLLEAGAKWVIKDFSSSQLWEWLQQFY
>NC_011729.1|WP_015956381.1|4912996_4914049_+|polysaccharide-pyruvyl-transferase-CsaB
MRAVICGYYGRGNGGDEALLVSLLQMLPQEVTPIVLSNNPPQTHQRYGVETCPARSAFSLLRTLKKSDMFIWGGGSLMQDVTSFASPFYYAGVMGLAQQLRLKTVAWAQGIGPLKRATTQWLTKQALQGCTAVSVRDSQSAKLISQWDISPLIAPDPVWALESKPVQGLWDLPAPRVAVNLRAHPLLTAKKLEILTQALVDFQKATQTFILLVPFQKSQDLAIARSISDRLPPSHKIIELEDPRQLKGLFKGVEMTIGMRYHSLIMAGAEECRCFALSYDPKVSRLMKELDIPGWELDQLPDDANLISTAWLEHYVNGDALSQVQIHSLIDRAFMHRELLQSVIDFNLNL
>NC_011729.1|WP_015956380.1|4911039_4912845_-|ABC-transporter-ATP-binding-protein
MSQQQKSKQSPHPLVRLMKYGRRYRVLIWQAVTCSIFNKIFDLAPPALIGAAVDVVVQRQDSIIAKLGITDIFGQLLFLSVLSALVWGLESLFQYTYERLWRNLAQNIQHDLRLDAYSHIQDLELAYFEDRSTGTLLSILNDDVNQLERFLDIGANEILQVITTVIIISGAFFILTPNTAWMAMLPIPFILWGSIAFQNLLAPRYGDVREKVSLLNSRLANNLSGITTIKSYTTERYEIERLRVDSEAYRQSNQRAIKLSAAFVPLIRIIILAGFTAILLFGGMEVVEGRLAVGTYSVLVFLTQRLLWPLTRLGQTLDLYQRAMASTNRVMNLLDTPIAIHSGNIALPVSTIKGEIVLDNISFAYQERYPVIENLSLHIPAGKTIAIVGSTGSGKSTLVKLLLRLYEVQRGRITLDGIDINDIILYDLRRGIGLVSQDVFLFHGSVRENIAYGSPDATIDDIMMAAKAAEAHEFIIKLPQGYDTIVGERGQKLSGGQRQRISIARAILKDPPILILDEATSAVDNETEAAIARSLEKITQNRTTIAIAHRLSTIRHAECIYVLEYGQIVERGTHEELLEKEGIYANLWRVQTGIRQLGLTH
>NC_011729.1|WP_015956379.1|4910224_4910752_+|flavodoxin
MSKIGIFYGSTSGITEEIAQKLRVLFGEQLCDIYSMEEDFDEYGQLLDYDYLLLGCSTWGAGEVQNDWREPLFEMELEKPDFTGKTIALFGAGDQVSHGQDFVSALGTLYQHFQKLGATLVGDYPTDGYDFKHSNALHDGKFVGLPIDEINQSELTEERINQWVESLRPVFIGSN
>NC_011729.1|WP_015956378.1|4909217_4909469_+|hypothetical-protein
MSELNPTISLTSSLYEQVTALAKQLQIPPTQVVMLAVEEYLRHYQDYQAKQLMNSWNEAYSDGLDESETLTLEAMRRHQGQLP
>NC_011729.1|WP_015956377.1|4905387_4908960_-|chromosome-segregation-protein-SMC
MVHIKRVELSHFKSFGGTTSIPFLPGFTVISGPNGSGKSNILDALLFCLGLATSKGMRAERLPDLVNHNHTNGRKTTEASVSVTFDLSDVSGEDDTNKTEPLTEWTITRRLRVTQGGNYSSTYYINNQPCTVNELHEQLNRFRIYPEGYNVVLQGDVTRIITMNSRERREIIDELAGVAEFDRKIDKTKETLESVREREERCRIIEQELKRSLDRLASDRVKAEKYKKLKAEIQEKQQWEIVLQVRLLQTQHQQLESQISNGDTQITQFQTQLDTLNTQIEQTTTTLNQLNTQVKALGEEEQLSVASQLATQKAKRHQLQLQQQQIETIIQQHHTNQDQTKIDLQQYQQSLSEIIDQKTQLNTETIPHLMGQRDHTRNTLEQTKTKSLQIATASEAWVQEQTSLSHKIGELQDTLNPYRTEQAQLTERHQRLQKTIDEQTPRLESTETELTSKKIELTGLTETLTITQEEIKTLAQQLTLAEHDRTIQQDTQKRLLKEQRDKQRELDKLEATQQAQQEAQGTYATQIIVQSDLPGVCGIVANLGEVDPQFQLALEIAAGGRLGHIVVEDDSIASAGIALLKQKRVGRATFLPLNKIYSPKLPDISNLRFAKGFIDLAVNLINCHPRYNTIFAYVFGNTIVFETIDEARHYLGKYRIVTLDGDLLELSGAMTGGSKPSRGSIRFGTVSTKDSEDIETLKRRLSDIDQMLTRTEELIAQKTEIVNNLSQNLTEARQKERELFLQSKQLQKDIDRLTGQKEELTLSLSQNNQELETVTRRLEELTQHIPSLEAQLQQAQRQLIELEASQTHSEWLEIQAHIKAQETQLQQQEHTLRQAEETLKDLETQTQRLEEKITESQQRLESLQNQTFTINHQEAELKQQILNSDQIIAETEILLHQLTEKLGETKKERDRTETSLRALQTQHQQTAWNLEKLLQTQQERKVTLESLKNQLETQRLELPDPIPELPEFILNQENLSQYLEQLQTDIKNGQKRLEGMEPVNMLALEEYERTKERLDELSEKLSTLEAERTELLLRIENFTTLRFRAFKEAFDAVNENFQSIFATLSDGDGYLQLDNNEDPFSGGLNLVAHPKGKPVQRLSSMSGGEKSLTALSFIFALQRYRPSPFYAFDEVDMFLDGANVERLSKMIRQHSEQAQFIVVSLRRPMIEAAQRTIGVTQARGAHTQVLGIKL
>NC_011729.1|WP_015956376.1|4905145_4905370_+|hypothetical-protein
MEKQQTLTVFPDKKEPKLNLLALVFFMMGALPLYVQFQGGNNEGHIESGRDKNRLFKITLLAVLVGATLEMFVF
>NC_011729.1|WP_015956375.1|4904750_4904954_-|hypothetical-protein
MLYWGYIAGRSNTSIFQVDELEEATEKLVSYCETNASQPVFAAIEATKQCYLKLSAEEKQKAVSVIG
>NC_011729.1|WP_015956386.1|4918768_4919458_-|Uma2-family-endonuclease
MVGQISHEGSNQIIYPDSDGQPMADNTKQFRWIMVIKENLELLFAEEEDVFVAGDLLWYPVEGSPTLRQAPDVMVVFGRPKGDRGSYKQWEENNIIPQVVFEILSPGNRLREIIRKFRFYENYGVEEYYIYDPDKVELEGWIRSNNILEVIEEMNNWISPRLGVRFELKDDSLELYRPDGEKFLTFVELAKLRKEDQKKAEEALRKLEQEKEKVKKLEARLRELGVELE
>NC_011729.1|WP_015956387.1|4919723_4921916_+|DNA-polymerase-III-subunit-gamma/tau
MSYEPLHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAKSLNCLSSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIERAQFAPVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRIPLEDMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDAESLLDQLSLLSGTITPARVWELVGAIPELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTAPTRSDLVAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWLEVTLLGLLSLGVVSKPSLEEKPVNGNNGKNGKGHHSSVQAPSISPNSQIISPPPQPKPEPKVDPVQESSPPQTTPEKPKTTEQNIQPSEDLEKLWHQVLDQVEPPATQALFSQQGHLISFDGSVAIIGVNSQNLFKLYQERISALETALKAIFQKFVKVNIQITNVNQAPEIPKETPSLNPISSRQIEPIKEVAQPQSTPSPDEEETFTNNGKSPQVDPPSSPEPESLSPSQEEITITQDEPEILDPVEENTLDESKNEINKACELLIKAFEGELIENQEIFLSEKSEMNIDKPLSNSPVTPIINTTPIPESNSEQIPDEIQEKNLSNDDIITLNESHDLVEIQTEQEAQNQEYKPQIIPEIKGRPDISNLPEDELDF
>NC_011729.1|WP_015956388.1|4921904_4922567_-|TetR/AcrR-family-transcriptional-regulator
MTHSPQKPSLKKLRPPQRDAQATQEKILEAAEREFSRHGLKGARIGEIAQNSGVTTAMIYYYFQSKEGLYKAVLERPALEVQEIMSGLNLDQKPPIEALKAFIEAAIAYEAKHPHRGMLWFQEANQNGGEYFKLNKGSWSGIFAYINAILERGMADGSFRQLDPLVTIVQILGICIFYFNIHENWKHFMPDYDRLSPEAVNKHTQEAIDLILNGVKASKI
>NC_011729.1|WP_157867645.1|4922742_4923702_+|Rieske-2Fe-2S-domain-containing-protein
MLVGAPWLLGHRSMLGINQPKKVSLYGLDYVIWQEPNGKINALPNACPHMGAMLSEGWCETKNKDNSVVVCPFHALEFDSQGCTVLPGSNKKTLPQLKPLELMIEGDFIWSYGGYEPKISLPKILNEIAAKYEFIGYTGDTSVKTDLLSMLLNMHDYNHQNGTHRELFRIIEVQFKEFIDDGYSSHAFYDNITVPYQFWEKVQKPELFMIPKVIEAHLENHFPSLVIFYGNFPGGKLAQCHFFVPESETQTRTYVLMFAQTKNPVFKLLKNRILNLAKVVVEQDTDILGKIYANVPQKIKLNNEIGMDWVRRNFKTFSE
>NC_011729.1|WP_015956390.1|4924034_4927838_-|PAS-domain-S-box-protein
MLTHYRPQTQRYSIAVLSVIIALGLMLLLDPWMPMETSPFLVFFVAVTVSAWYGGIKPGLVATFLSAIASYYWFFIPKETWDISTADAFRLMIFILECILISILCEALHQAKRKVEINLHSLQQKESMLEKANTQVSRILESIGEGFFALDYQWNFTYINNPGEIIFKQSRQTLEGKNIWQILPEIEGTVYEQFHRAIKEQIPICLEQNIFTESNQFYEIRAYPVSEGLAVYLLDVTERRLAALQLKESELRFRQLAENISKVFWISDLEKSEILYVSPAYERIWGKSCESLYQYPSSWLEAVHPEDRNRVNLAISQMKNGEQDFKEDYRIIRPDGQIRWIGARTFPIYDENGKRYRIAGFAEDITERKRAEQALQESERRFRRLVESNLFGVAFANIAGRLHYANDYYLNMVGYSREDLENGLIQWNQMTPPEWLDLDFKALEEMKVKGVTTPFEKEYLRKDGSRVPILIGAAFLDEPYEIAQEMIGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVDSHQRYRFNNRRYEEWFGVPIDQISGKTLQEFLGDSLYEKVRPRIEKVLKGEQVIYEEEITLPNSESRYIRANYMPRFDSQGKVEGFVALINDFSDRKRMEDNLRESEERFRMMANSSPVMIWLTDETAGCIFVNQTWLNLTGRTLEQELGEGWTDNIHPEDLSYVLEDYLQAFNTRQPYEMQYRVKSANGDYRWILERGSPRFTPEGKFSGYIGSCTDVTERQQAIQALQQSEQALQQHAQMLDLANDSIIIRDLNEAIAYWNHGAERLYGWTKTEAEGHQIHNLLKTIFPQPKTEIYSILTRQGYWQGELTQTKQDGSQIIVSSRWTLQYNSQGQAIAILEISDDITERKQVEAALRVSEERFRAIFEQAAVGMSLLNLDGRWLRVNQKLCEITGYTQEELLQKTFQDITYPEDLETDLNYVSKLLAGEIETYSLEKRYIRQDKSLIWVEITVSLMWDQTQSKSSSKVPKPQYFITVIEDISEAKRGEIERQQAQIALQERAKELTSLNTVLASTTTMLQKRNQELDQFAYVVSHDLKAPLRAIANLSEWIEEDLEGQLPPENQEQLQLLRQRVHRMENLINGVLEYSRVGRKETKIETFSVDELLTEVIDSLSPPPTFTVEIGEGMPTLTTSKVFLAQIFSNLISNGINHYPGSDGHLWIRVKELDKFYEFAVADNGKGIAPEYHQRIFGIFQTLEKSENLESTGIGLAIVKKIIEYQGGNIKVESELGQGTTFRFTWPK
>NC_011729.1|WP_015956392.1|4928546_4929491_+|NAD(P)-dependent-alcohol-dehydrogenase
MKAVVINRYGSADVLEYKEVEKPIPAADQVLVKVMASSVNPVDWKIRQGDLQLLSSFGGFPRLGCDFAGVVEAIGNEVKSFKVGDEVYGLANPLSGGAYAEYITISESSMALKPNQATFEQAAAIPVAGLTAFQSLIELGQLQPGYQVLVNGASGGVGTFAVQIAKALYAEVTGVCSGKNREFVLGLGADFVIDYHQEDFTKQVKQYDLILDAVGKSSFQKCQPVLKPQGIYISTLPSVDTFLAIGQTFFFSGQKAKIVLAQPRRQDLNGLSQLIDQSKVKVIIDRVYPLSEIAEAHRYSETGRAVGKIVLSVP
>NC_011729.1|WP_015956393.1|4929565_4930201_-|hypothetical-protein
MIYLDSALITEAEIALKFGWVKGITTNPTLLAKSDLSPQETLKKLAAISPGELYYQLTATNFEEMIAEGQQAFQLIGSKTVLKVPATEVGFQVVASLSKNIPCSVTAIYSAAQAAVAYQAGAKYAIAYVNRATRLLGDGLQLVREMAAVLQGTGVEILAASLKSPQEAADALQAGADHLTVPLTLLQAMTTHELSQKTVEDFNQQGRGILS
>NC_011729.1|WP_015956394.1|4930345_4932289_+|ABC-transporter-ATP-binding-protein
MNEPVLEVRNLQVKFTNDHQDVLAVDEISFSVNRGEVLGIVGESGSGKSVTSLAVMGLIPTPGKISGGEIWFRTENEAKPVNLLNVDENIRREYRGGQIAMIFQEPMSSLNPVYTIGFQITEAIRLHQRVNQEQAECQAIDLLQEVKLLASDEQLQEQYLNKIQSTYNPQQGSPQLTQEIKTYIAQQKQAILKRYPHELSGGQLQRVMIAMAISCNPTLLIADEPTTALDVTVQATILNLLRHLCKERNMSMMFISHDLGVIANIADQVAVMYRGKIVENGSIGQILVNPHHPYTKGLLNCRPEIDKVVKKLATVSDYMEEVKDPVTGEMSIEPKQGVTVSSISESEEKQRLIKEQQKRLEKLQKQEDILSVENVRVYFPVKGVFGKAKDVFKAVDDVSFIVKRGETLGLVGESGCGKSTLARTILRLIPSTGGTIKFRSNDSGWEEISKLSINDKRLRRLRQNLQIVFQNPYNSLNPRLTIGQAIMEPMVIHKNPKWATQKQKIERVKMGLERVKLNPNWYNRYPHELSGGQRQRVCIARAIILDPKFIICDESVSALDVSVQAEVLNLLKDLQQEMGLTYIFISHDLSVVKFMSDRIMVMNRGQLEEMGTADEIINHPQKEYTQRLIASIPKFPEELKQSTNQMR
>NC_011729.1|WP_015956395.1|4932352_4933000_+|Uma2-family-endonuclease
MTPTAINLPLEAGQNITLSPVSWSRFEQVLAELPQRRLSRLAYANKILEIMTPLPEHERAKIVLADLVKTLLRLQKRPWEALGSTTFKRQEMAVGVEPDECFYIQNYQAVIGKDTLDLNSDPPPDLAIEIDVTSITKQAAYLTLKVPELWIYTQGKLTIYIFQEDQYQLSNNSLIFAGIPIIELIERFMKRAKIVGVSQMLLEFEEYVNNLLLKK
>NC_011729.1|WP_015956396.1|4933195_4934293_+|patatin-like-phospholipase-family-protein
MKPKIAIACQGGGSQTAFTAGVLKALFENNVQDYFKIVSLSGTSGGAICAFLIWYALKKGDEIIWKRVIDFWADNTAQTYQERLFNDSVIKYLEWVSKGLIPQYTLSPSSPMAKIGFSLATQGLRSRFTNLKELLEAHIDFAELAAWGPVTEPPILILGACNIISGRLHKFISRQEAIKVEHLMASACVPNIFPAVSIETMAYWDGLFSDNPPIRSLIRRALVGIENIPQEIWVIKINPTAADRVPVQSDDIADRRNEVEGNISLFQSLDQIEFLNDLFLRGAFKEEFLAEAELTQAIKIPKSFADDPDRDYHIPMIEMSKELADTLNYESKLDRCPESLKRLIEDGEKQGKQFIETRLTQMGLR

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Crispr_ID: NC_011729_42

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_42

5095710-5096251

TypeV

N:A

Consensus_repeat	Method
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	CRISPRCasFinder
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	CRT
CTTTTTAATT--AATGAATCCTGGCAACGGGATTGAAAC	PILER-CR

7 spacers

cas14j

The CRISPR arrays of NC_011729_42

>merge|NC_011729|42|5095710-5096251|CRISPRCasFinder,CRT,PILER-CR
GCTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGTGACCCTTTATAAAAATAAAAAGGACTACTGACGTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGCAAGTATTTTTATTTGGTTTCTTTTTCATTTCTGCTGTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGAAATCCTTATGACAAATGGCTGGTTTTTATCCCCAAGTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGTCCCGATGACCATCCGGCCATTTCAGGAAAGCCTGTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGCTAAAATAGACCTGTCCTTGGTAACAGTAACCCATGTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGGGACGATCGCCACCCGATCAACCTTTGGGGTTTGCAAGTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGAAAAACAAGCAGAGGAATATTTAAAAGAAATTAAGGTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG

>NC_011729|42|38|5095710-5096251|CRISPRCasFinder
GCTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	TGACCCTTTATAAAAATAAAAAGGACTACTGAC
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	CAAGTATTTTTATTTGGTTTCTTTTTCATTTCTGCT
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	AAATCCTTATGACAAATGGCTGGTTTTTATCCCCAA
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	TCCCGATGACCATCCGGCCATTTCAGGAAAGCCT
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	CTAAAATAGACCTGTCCTTGGTAACAGTAACCCAT
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	GGACGATCGCCACCCGATCAACCTTTGGGGTTTGCAA
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	AAAAACAAGCAGAGGAATATTTAAAAGAAATTAAG
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG

>NC_011729|42|12|5095710-5096251|CRT
GCTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	TGACCCTTTATAAAAATAAAAAGGACTACTGAC
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	CAAGTATTTTTATTTGGTTTCTTTTTCATTTCTGCT
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	AAATCCTTATGACAAATGGCTGGTTTTTATCCCCAA
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	TCCCGATGACCATCCGGCCATTTCAGGAAAGCCT
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	CTAAAATAGACCTGTCCTTGGTAACAGTAACCCAT
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	GGACGATCGCCACCCGATCAACCTTTGGGGTTTGCAA
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG	AAAAACAAGCAGAGGAATATTTAAAAGAAATTAAG
GTTTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG

>NC_011729|42|13|5095712-5096251|PILER-CR
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGTG	ACCCTTTATAAAAATAAAAAGGACTACTGACGT
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGCA	AGTATTTTTATTTGGTTTCTTTTTCATTTCTGCTGT
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGAA	ATCCTTATGACAAATGGCTGGTTTTTATCCCCAAGT
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGTC	CCGATGACCATCCGGCCATTTCAGGAAAGCCTGT
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGCT	AAAATAGACCTGTCCTTGGTAACAGTAACCCATGT
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGGG	ACGATCGCCACCCGATCAACCTTTGGGGTTTGCAAGT
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAGAA	AAACAAGCAGAGGAATATTTAAAAGAAATTAAGGT
TTCAATCCCGTTGCCAGGATTCATTAATTAAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956539.1\|5085640_5087302_+\|nucleotide-pyrophosphatase	unknown	unknown	gnl\|CDD\|225914
NC_011729.1\|WP_015956545.1\|5093907_5094102_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380155
NC_011729.1\|WP_015956553.1\|5106449_5107265_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NC_011729.1\|WP_015956551.1\|5103481_5104708_-\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NC_011729.1\|WP_015956540.1\|5087346_5088750_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225747
NC_011729.1\|WP_015956542.1\|5090122_5091040_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|313356
NC_011729.1\|WP_015956547.1\|5096906_5099831_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NC_011729.1\|WP_015956541.1\|5088948_5090085_+\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NC_011729.1\|WP_015956543.1\|5091233_5092553_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|377422
NC_011729.1\|WP_015956546.1\|5094127_5095549_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224512
NC_011729.1\|WP_071819378.1\|5111117_5111318_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956554.1\|5107795_5108986_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NC_011729.1\|WP_015956544.1\|5092713_5093802_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NC_011729.1\|WP_015956549.1\|5102432_5102981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223905
NC_011729.1\|WP_015956538.1\|5083826_5085479_+\|nucleotide-pyrophosphatase	unknown	unknown	gnl\|CDD\|225914
NC_011729.1\|WP_015956537.1\|5081575_5083162_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041238404.1\|5105314_5106364_+\|type-2-isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235465
NC_011729.1\|WP_015956555.1\|5109124_5111032_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|214935
NC_011729.1\|WP_015956548.1\|5099848_5102311_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_011729.1\|WP_015956550.1\|5102989_5103352_-\|response-regulator	unknown	unknown	gnl\|CDD\|381116

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956539.1\|5085640_5087302_+\|nucleotide-pyrophosphatase	gnl\|CDD\|225914	COG3379, COG3379, Uncharacterized conserved protein [Function unknown].	1.13863e-10
NC_011729.1\|WP_015956545.1\|5093907_5094102_-\|hypothetical-protein	gnl\|CDD\|380155	NF012221, MARTX_Nterm, MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA. This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.	0.00500171
NC_011729.1\|WP_015956553.1\|5106449_5107265_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	0.000170678
NC_011729.1\|WP_015956551.1\|5103481_5104708_-\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	1.15014e-19
NC_011729.1\|WP_015956540.1\|5087346_5088750_+\|hypothetical-protein	gnl\|CDD\|225747	COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane].	1.11692e-18
NC_011729.1\|WP_015956542.1\|5090122_5091040_+\|glycosyltransferase	gnl\|CDD\|313356	pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2. Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis.	9.82916e-43
NC_011729.1\|WP_015956547.1\|5096906_5099831_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	3.81048e-123
NC_011729.1\|WP_015956541.1\|5088948_5090085_+\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	9.48104e-36
NC_011729.1\|WP_015956543.1\|5091233_5092553_-\|O-antigen-ligase-family-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	0.00105673
NC_011729.1\|WP_015956546.1\|5094127_5095549_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	9.23385e-34
NC_011729.1\|WP_015956554.1\|5107795_5108986_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.14194e-58
NC_011729.1\|WP_015956544.1\|5092713_5093802_-\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	7.97452e-35
NC_011729.1\|WP_015956549.1\|5102432_5102981_-\|hypothetical-protein	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.47722e-14
NC_011729.1\|WP_015956538.1\|5083826_5085479_+\|nucleotide-pyrophosphatase	gnl\|CDD\|225914	COG3379, COG3379, Uncharacterized conserved protein [Function unknown].	5.67953e-27
NC_011729.1\|WP_041238404.1\|5105314_5106364_+\|type-2-isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235465	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional.	0
NC_011729.1\|WP_015956555.1\|5109124_5111032_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|214935	smart00955, RNB, This domain is the catalytic domain of ribonuclease II.	3.70319e-59
NC_011729.1\|WP_015956548.1\|5099848_5102311_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.33524e-53
NC_011729.1\|WP_015956550.1\|5102989_5103352_-\|response-regulator	gnl\|CDD\|381116	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators. OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.2641e-31

>NC_011729.1|WP_015956546.1|5094127_5095549_-|sugar-ABC-transporter-substrate-binding-protein
MRIPIIVRSLVQSRRYKNFCVSSGILLTLYSSFVPVVAQETIAPLPPLESGSVLTDANYTVGPGDRILISLFQEENYTGEHIIAVDGTVSLPLVGNLKVSGLSLAKITELVTQKYAQYLKRPVVTLKLIAARPLKISVIGEVQKPGSYEITFQENQQFPTVTRLLELSGGITISADIRQIQIQRNIDGKKEVLIADLWNYLQQGDESQNIILRDGDIIFVPTANQIDMAQANYLDDVTFGIQAPEAINVAVIGEVYRPGTYTIESEQTTPKSATITEAIQLAGGIKPLADIRQIEVRRQTRNGSQQTFKVDLWELLKTGDTNKDIILQKGDTVVIPTANQLTAAESSTLATASFAPTTIRVNVVGEVNNPGLIEVAPNTPLNQAILAAGGFNAERSKKNSVELIRLNPDGTVSKKDVSIDLASGINETNNPILRNDDVIIVKRSNQASVSDGLGMLLTPLQFIFPFLRFLDNN
>NC_011729.1|WP_015956545.1|5093907_5094102_-|hypothetical-protein
MNVEIHKLIKSYREQLIKSGVDPSKAEKASQNLDQEKLRIISEIWSEWATTVSQLESTVDEKAS
>NC_011729.1|WP_015956544.1|5092713_5093802_-|sulfotransferase
MKLSEHNDVSHHPIFIVGTPRSGTTLMQNILNKHSDLYIASETHYFSDLRKKINNGEQKLLTAKEIKLCEDYFLGLTHKWYGAKCDPEQGWMNRLKLRELANRIGLGTDAYFEAYCRLCAEKEHKKKWGEKTPRHIFEISTILDIYPQAKIICMIRHPGGLMASYRDWKNFYSSEKYEFSRSERKRIINSYNPALISLHWKAAFNAAVEACQKFGTNRVYIQRFEDLVSSPESTLLNLTEWLSLDYQCSMLNVVQLNSSYLKVWKDESRVGLFNEVAERWRQKLSDTEIATFQFFCGDLIEKAQYKYEPVKTSPITIVKLLISLPVAGFRTLVANYNRIGNLFTHIWPRLKLALFPALKLTK
>NC_011729.1|WP_015956543.1|5091233_5092553_-|O-antigen-ligase-family-protein
MKPQNLPEALIWYYIICTYLIYFIGAQSVFAPLLGLFLVAYLLLEWWEQSHKPISTQKIQISLTTWIWILAVLTIGLTIIVGGINSGYGIGQIAKSFLNQGWLRVWGVLGLFMLVGSLNIRPQLLTRAICILCLQSLIIVPIVCLATNILNVPDTLYTSPLQIFKGNVDGYTVRISYGEDGFIPGIERLVLLAPWPTPFGFLANIYFIMITQEPNKKLRYFSMFACLIMVILSGSRLALLCLIASLALVWILTHLTQPWLYLTAGVSFYCLGLWPNIVINSLRSFQSMFDNLRAGAGNSTNARDIMVRVGIERWKNESPIWGHTPMAQDNIPKPLVVTPIGSHHTWVGLLFDHGLVGCVAFGVAMTWSFINLLIKAQTSDYAKAGLGILITLTFFSFGEPIPTYTYLLWPGFLFLGILFKGNEKIPTRSLSLNSKKANT
>NC_011729.1|WP_015956542.1|5090122_5091040_+|glycosyltransferase
MPKISVIVPTYNAESTILETVNSVLNQTFKDFELIIIDDGCTDKTLDLIGSIKDSRIKVFSAQNGGLPVARNRGIRNAVGDYISFIDADDLWTPNKLEKQLKTLEENPSSGVAYSWTTFIDKNSQILYPGDKYLFEGNVYPKLLTKNIIGSGSNILVKRKYLELVGEFDPSLKSCEDWEYNIRLAKHCCFKVVPEYQILYRKYSQSMSYKVDTMEKAHLIVINRSFENAPKELQHLKKKALANAYKFFAKLHLENALDQNKAEKAIDKFKQAIDFNWSILLERETQNLLTKIFLLRFFAYQVSSV
>NC_011729.1|WP_015956541.1|5088948_5090085_+|glycoside-hydrolase-family-5-protein
MMKFIIFRNPQQWILALLFLLTILASKSLSAPPDQPINPWTLRNMMGRGVNMKAALGGKHNWWIKYNPKHGEAIQKAGFNSVRVWFFWAGLNSGSPDYTLSPAALEDMENIINDLLNRNLVVVLVPMELGNYGEKNLTTNPSAHKAKYLSIWKQLADRFRNHSHRLVFDLFNEPHGELGKKELNDWHESVVPIIRKTNPTRVLIFNGDDWGTASTLKNIIIPPEAGQYVMGDFHYYWPMGFTHHGNQAWTGTVEQKNRVRVEFNKAVAWSKKYDIPVVCTEWGSNNIRSLSEREAYHLFIRDELLVRGFSYQQYAFSDGQFKMYDGFKHQWVYPTLRDIAVAGDASWEVSASKPDHRPKWKQYLANLRFDFLFKYLFF
>NC_011729.1|WP_015956540.1|5087346_5088750_+|hypothetical-protein
MTESLRIPHSSSRKKFNWGSWKNYLLLTVIFNTALWSLSLTYKRVAEPVYASDWSVTLPGLGSTTAVQLPNIGQTSTQIQSPFNNYFEPRETYKYIALSRPVLLAAANQVGLSLKEFGKPDIKIVDNTTLISFNVEGTSPEEAQNKAIALYQAFEKRLQELRLQEAGLQNSQLESELDSARRKLQDAQQKLSRYKARSGFSSFEQITQLSTNIEQLRRERAVILAQKQQSETNFNELSTTLSFSTQQATEAFTLQSDPSFQELLTDYGESNTALVNLNSRYTPNHPAVIDEQARLDFIQNALLSRAQSLLKKSVSLSYIEGLSVNNSQPRQQLTQELISTKVEKQGLASRAQEIERQTVALEQKLKELAKHQLVVEDLQRDVKIAEAVFSSTITKLDLGKTQNFGSYPPTQMISEPSLSSNPAWPNPTLILIGTIGGSFLITSGLFLLGLRDHLSRSNSQKINQSLA
>NC_011729.1|WP_015956539.1|5085640_5087302_+|nucleotide-pyrophosphatase
MKKRVLAIGLDAADPLLIEKWISQGHLKCLGRLREQGTYCRLKSFESYRAETPWTTFLTGCAPQKTGYWEPVKLKEGSYEVEEIGAYNFAEYAPFYSLNNDYRVAVFDLPHSRLSNGVNGLQVLAWGAHAPLTSSQSQPSNLLSELIAKHGEHPTLNKDHASCLDLAALRRLEKDLEIGIARRSAICQDLLKREDWDLFLTAFGETHSAQHYFWHLSQPNHPLYQIMKVNSADDLLLKTFKAVDRAIEEIISQVSDDTDIVVFATHGMDINVMDLPSMVFLPEFLYRVNFPTKVGLAGGSIKKPPGKPITQGRVKRGPIGTLWSLKHDSHPLKRFLRRNLPTKVFNALMPFSSQSPDLISPFKLQAESNPLFYQPAVWYQPFWSQMKAFALPSFSEGYIRINLQGREPQGIVSPSEYDEFCEQLSQQLLKLIDRRTGQPMVKDIIRTRGSALDNHSKLPDADLVVIWQENSVADVVDSPDYGRIGPVPYFRTGSHRSRGFFLAKGATIPPNSTLPDGHTLDLAPTILNLMGATIPDYLDGKSLIKINTPSLQY
>NC_011729.1|WP_015956538.1|5083826_5085479_+|nucleotide-pyrophosphatase
MKKTVIVIGLDAAEPRLIDKFMSEGYLKNLNKLRQKGTYALLESIKYYCAEAPWTMFLTGCPPTRTGYWSPIKFHPNIYETELVEAYNFYEYPPFYALNKDYRITVFDIPQTALSERVNGIQVLGWGAHCAQTPSYSFPAELFDDIVNKYGLHPGLHKDHADCYSLASLYKLEEMLLRGIDLRSAICQNLLKQEPWDLFLTVFGEIHVAGHFIWHLSQTNHPLYDIVGSHGSHDSMLNCYQAVDRAIGEILTQAPKDAYVIVFSVYGMNTNVTDLPSGTFLPEFLYRFSFPGKFALARGDLNSELKPPISKCKINAGWEIWSMKDDPSVIRRFLRRETPYQLFKHIERFLGPVNQPDLICPNKLDEMFDPLSFQPAEWYKAYWPYMKAFALPSFSEGYIRINLKGRESRGIVSCCEYDHVCNEIINKLYELKDPRTGIGMVKEIIRTRRYALDNNFNYPDADLIVIWQEDSPTDVVDSPDFGRIGPVPYFRTGSHRSQGFFMATGSGISPNSNLPVGHILDLAPTILRLMNAPIPYYCQGKSLLNINIAS
>NC_011729.1|WP_015956537.1|5081575_5083162_+|hypothetical-protein
MNNPIKTFSFTKIAENNRNFDGFEWGDFQNSPAINDKGTVAFDVNLLNIDGVGIFTGDGKKITREYIATPEYPGGPNASSLGLDINNKGILVFSISDGFFDTDILVSRNGEVSAVGNGFLANPVSINNRGTVAFAQGDSRNPTSHTVETVSPNGQSTIIASSFDEESGSVLFAPEGASINDRGQVAFKNEVAGIFVGKQGKPTNTFKTIADGSGQFDRFDFLPDINNKGIVAFSAKLDDGSSGIFLGNTKKPTNDTITIVDSQGLFDSFQDVALSDKGEIAFEASLDTGEFGIFTGDDPIADKVIAIGDLLFGSTVTGLDFFIEGLNNSGQIAFSAELENGTEVVVRANPTNPTKDYLIEAENFNLETYKVENTSVASNGKLISLLNGGNAGSAATQFTGNSGYYDILVGYYDEIDGKSLFNFKVNNYLKDQWKADQKLDPKGYVATRQNFTEHLISGISLQTGDILKLEGFRDQEEYARIDYLKLIPSKENRRGLNNLENITFCSDSLLSPDSLENYGIANNDSFLS
>NC_011729.1|WP_015956547.1|5096906_5099831_-|hybrid-sensor-histidine-kinase/response-regulator
MDIGQEVRLNFIEEADNCLDRLESVLLQLSTTVVEKEQFDLALRAAHSVKGGAAMMGFNTLSQITHRLEDFLKILRVRYQGFLIETEIESLLLQGLDCLRQICDFHRQEQDREPSWVIDYSDTIFDRLSQFLGELQPADEDVLMFQEENVNPALLLFEQGVSTLLEQLESQLNVLPDAELHQKFIQGSEQLTEFALMADIPTFINLCQSIQYELLNTPSENILPLADRALKLWQRSHALITLGRWENIPQQIDLPSEFSESENKDNQSWEFGSIDVLETHEELATDESENTSFSDFALSAFGEEELTEWQEILTLETEKILTDLDSKTADLPVIATQTLTKQTDRMFRLSVEQMNQFNRLFEDLILERNGINLRLEQLKTFVSLMWERMNRLEMSNQLLRRWYDGASLAGIVPSTVPASSSSSTENFQGSALSKSTNVLKQQFDVLEMAQYTDLHLISQDQIETIVQLREVATDIDLSLQDINQTVREFNQTTQSLYNNLLRSQMRPFGDSIKHFPRVMRDLSLQFGKSVNLKIEGENTLIDKSILEVLSDPLNHLLRNAFDHGIEETYTRLAMGKPPQGTITLKAFHRGNQTIITIQDDGQGINLSKIRSRLIEQGFSETEVQRMEDSELLNQIFEPGFTTTEQVTELSGRGVGMDVVQTKLKEIRGQIQVDSQAGLGTTFTLVVPFTLSVLRVMVVESNSLVFAIAADTIKSVIQLQPEQIFQKDEQETIVWEQQSIPLIRLGEKFSFTRPCKPLMMTGTPIINQPLALIIDNGKQIQGIYLERFWAEEDVTIRSIVSPIILPPGFNQSIIWGDGRVIPLVDLLECVQSLDNYSQSSNYLSSNSLLEKDIKTVLVVDDSVNVRRYLAFTLDKAGYQVELAKDGQEAVDKLMSGISVEAVICDLEMPRLDGYGVLEILRQHSQFETLPIIMLTSRSNDKHRKLAMNLGANAYFSKPYTEQELLKTLEQLISVA
>NC_011729.1|WP_015956548.1|5099848_5102311_-|HAMP-domain-containing-protein
MTNYQKYIASTPDAKDNELFSDSSGEKDSQKTDPPNLSKPNLIQSFFNFEVIGKNTLSRRLLLTVLPTVLVPLTVASLIGFSIIRQKAQNQTLSQLEYHVDLSRNVVEEFLDDGFVLTDLVVTNPTVINDLRSKNNNPDVQKLSVLPIESLEKTFAQTKLLNANPDLNTYLEKLTQTNRLAEIFITNSYGFNTAYSNPTTDFVQRDEKWWQTAKQQGSSIDNPEYDESAQETVIAFAEAIKDPSTGNFLGVIKTGILASELNNRLTSQISGNLLNSEQIQIISAGAGVPLTTLTAQITNSDSQSIIGGENVLNFIRAFYQLAGTTENEINPQKIKELEQQNGLSNLTLELLDNKETNSKTLLAQFEYQGKIFNLSTISVADWVAISSVNQSEIALAGQELLFVFAITALILGGLSVALIFILARQLSNPLTNLTSKAQQVAKGNLEVQAELEGTVEVQTLADSFNNLVSKVKTLLNQQILATEEQRQQRENIEQAIFQLVEEIEAAAEGDLTVRASLSSLELSTVADLFNLIIESLKDIAIEVKQSTNQVSTSLETNEISIRQLAEQSIEEAEEIQQALQTIQNMTDSIEEVATNAGQAAESSEQAYSEVQQGSQAMETTVESIINLRNTISETAQKMKQLGESSQRISQVVAIIEEIALKTNLLAINASVEARRAGEQGQGFTVVAEQVGALAEQSSAATKEIARIVAAIQSETQEVATQMEAGTVQVVDTSRLVKTTQDYLNQASQQSQEIYRLMQSISQATVSQTATSQIVSQLMERVSQSAQEKAVYSRQIAEEINATTAVAKELESKVDQFRVDK
>NC_011729.1|WP_015956549.1|5102432_5102981_-|hypothetical-protein
MSQTDLVNKLEQLLPHLFNSQNVSGEPYLRFQLTPGTLAVVSMEQVQESLVIPTENITPIPNLPESVIGLTNIHNSVFCVVDLGNLLNISLSQLYPQAYHVIVIRLSLDDSPREWLLGLSVHRILGLTRLSSDCFQSPQEDIPKQLTPFLSGCFYENQERILAFDLKTIIQACPLINSQTQR
>NC_011729.1|WP_015956550.1|5102989_5103352_-|response-regulator
MKNILVVDDMESELTLIKTYLIQAGYTVITAANGQEALNKVSEKKPDAIVADLMMPDMGGLDLCRHLKKNTDTVDIPIVACSAKKRDVDRMWAFKQGVKAYVTKPCTQQDLVDALKSVMS
>NC_011729.1|WP_015956551.1|5103481_5104708_-|response-regulator
MNPAFNPFKLLTQVAIAHPNEQLNLTSGNVRWNIYFYQGKIRYATHSLQSLETIESCLYSLGYGEEIPKISRGMAQGNLSLEKGSKCVEKAIKWLTEHKNLSQSQKMQLLTQLTKEALETFVWVRNGKYNLNQEQFCSLSIDNGLNLEELLHFWQKKLQAWQKLSPLIYSPYQRPYCPDVSLIPSSISSTSANILKKIAQLKGKISIRQLSILLKSDDLKVAEFLYPYIQSRVLHLYPPLTPLDQLPRIPSAPPSTLSQKTTVNLNQNNQLFLSHENITHPQDYQTNKVTKIICIDDSETMLNTFKTYLNSDRFQLYTLSNATTALNKLFEIKPDLLLVDIEMPGVQGDQFSKILKRSTAFKNLPIIIVSADLAKIQASKINGQLANDFLKKPFTKEDLLKKIYKYLN
>NC_011729.1|WP_041238404.1|5105314_5106364_+|type-2-isopentenyl-diphosphate-Delta-isomerase
MTPPINTATEIETRKADHLRVCLEEDVQFQRVTSGFENYRFTHCCLPEFDRKDINLQTRFLGKELGYPLLISSMTGGTELARLVNTRLATVAQRYGLAMGVGSQRIALEQPQLASTFAVRSFAPNILLLANLGAVQLNYGCGVKECLHLIEILEADALILHLNPLQECVQSKGDTNFRGLLAKIAQLCQQLPVPVVVKEVGNGISAPMAKQLIEAGVAAIDVAGAGGTSWAKVESQRAKDKKQRRLGQVFAEWGIPTAECITTIREMFPTIPLIASGGIKNGLDVAKALALGADLVGLARPFLEAAVESEAAVDEFVDFLIAELETALFCTGNSTVSQLKNSGVLQIQK
>NC_011729.1|WP_015956553.1|5106449_5107265_-|2OG-Fe(II)-oxygenase
MVQTLTRQDKILNQLTEESLKQVLFGDALAIQVPNFLETPLCQKLASWYENHYQRQQYSTEFYKDGKVFQVNLGVLRIGTPYNLTYGKAKTDPIWEKYYLDAQINMQARQSICFPHTDPIELLKSKLCDLCEHGATIASFDDKPMFSGIGRVSLPNAKANEIQPHCDCLPEDYQLDGQFGVNFYLEVPEEGGELKVWDMKPLTPLEIKKMNIEKQWQSPSIKTHLIKPQQGDLVIINTRRPHAIKAYSEGKRISLATFMGYKHNQPFLMWT
>NC_011729.1|WP_015956554.1|5107795_5108986_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MYKAYKFRLYPNTEQQIALAKSFGCARWYWNYSLNLCQETYNKTGKGLSRGYIQGLLPGLKKEYPWLTDAYSQCLQVVALNLTTAYKNFFDKRAKLPRFKSKHGRQSISYPANVKFEGDYLKLPGKVGLVYCRRHRDMTGTIKTVTVSKNSDGKYFASVLVDDGKEQPESSTDGNAIGIDLGLTHFAITSNGSKYDNPRHVSKHSKNLKKKQQSLSRKKKGSNKRNKARRLVAKVHSKIARCREDFLHKLSRKIVNENQVIAVENLNVKGMVRNHNLAKAIYDVSWGQFCTMLKYKAEREGKTYIEIDRFFPSSKTCNVCLNQVGSLPLDVRNWTCEHCQSHHDRDINAATNIKNEALRILSLGTSDTANGGDVRRLGGRIPCLLDAIPDEVGSPN
>NC_011729.1|WP_015956555.1|5109124_5111032_+|RNB-domain-containing-ribonuclease
MREFSSQVIQELETLKIPDYSNREPVLGFTIDAETSLDLDDAIWIEPTRRGAIVMVHITDVTAIIPQGSALEAAAIERVETHYHTRTVDPMLPADLANNKLSLLEGQLRPTVTIQITLNHNAEIEDTRVSLTQLTSLKKFSYVEAESVMNQPSDPFFSMIRYCDIWSQKLYWRRTTMGAIGGTSISGLFLDEEGKPDQLRQYRSQQIIQEFMILANTAIAQLAAQHQLPILYRNHTASAIAPEKKIMIETLSALGMPDLIRSQLATWLNKATYNPYLVGHFALSIDAYCHFTSPIRRVADLLNHRMIKAVFIEHQAIPYTVEKLTKIADAINQYKEEYRQKNNEFFEAERAKRAQAILKIPSQLQHLGEKEFSQILKNAVGTEKIVTVIPEIINRLQNKSIQPLDLYYLSKCDYSQPETQNLAEALIAYYQQAATRATQILQIKSQRDSTVVDYIYQQNASHHFACWCIVDNQTSLYPAKGQNKQESKHYASILWWEQFFKQALVAPNDRVLEWEQNPEDLSEEEQDCNDVNPIETDEFNDSVLSSQPDEQTELLTQVDNPIGYLNDKLPIMGIDKPQYEYRSLPQGWECTCKVIYQEETITGVQIASSKKEAKHSAALITLNKLEQKQVFSFES
>NC_011729.1|WP_071819378.1|5111117_5111318_+|hypothetical-protein
MPSKKVYVKEYTIKAHYRTIHTRIFQLVCSFCHDACERETYATTCPKYGNQCNGVASKCLRLKKKD

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Crispr_ID: NC_011729_43

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_43

5341587-5341727

Orphan

N:A

Consensus_repeat	Method
TATCTAATCATAGTGATCATTTAATCATTTTAATCACAGTTAAGACTTTGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_43

>merge|NC_011729|43|5341587-5341727|CRISPRCasFinder
TATCTAATCATAGTGATCATTTAATCATTTTAATCACAGTTAAGACTTTGTGATTTTTTTTTCATCATAGCCGGATGAATCCGAGAATCTATCTAATCATAGTGTTCATTTAATCATTTTAATCACAGTTAAGACTTTGTG

>NC_011729|43|39|5341587-5341727|CRISPRCasFinder
TATCTAATCATAGTGATCATTTAATCATTTTAATCACAGTTAAGACTTTGTG	ATTTTTTTTTCATCATAGCCGGATGAATCCGAGAATC
TATCTAATCATAGTGTTCATTTAATCATTTTAATCACAGTTAAGACTTTGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_157867652.1\|5335572_5336826_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|234571
NC_011729.1\|WP_015956742.1\|5337157_5337355_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956747.1\|5341094_5341493_-\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|275083
NC_011729.1\|WP_015956753.1\|5347320_5349198_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NC_011729.1\|WP_015956739.1\|5333198_5334113_+\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|235841
NC_011729.1\|WP_015956751.1\|5345293_5345584_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956756.1\|5352524_5353151_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956749.1\|5343914_5344265_-\|translation-initiation-factor	unknown	unknown	gnl\|CDD\|236021
NC_011729.1\|WP_015956750.1\|5344368_5345289_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|381259
NC_011729.1\|WP_015956752.1\|5345606_5347169_-\|patatin	unknown	unknown	gnl\|CDD\|132846
NC_011729.1\|WP_015956738.1\|5331397_5333170_+\|M61-family-metallopeptidase	unknown	unknown	gnl\|CDD\|226483
NC_011729.1\|WP_015956740.1\|5334393_5334966_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_041238426.1\|5353458_5354079_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_011729.1\|WP_015956743.1\|5337465_5337945_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374405
NC_011729.1\|WP_015956744.1\|5338024_5338804_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_011729.1\|WP_015956755.1\|5350330_5352484_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_011729.1\|WP_015956745.1\|5339105_5339636_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|275387
NC_011729.1\|WP_015956758.1\|5354249_5354690_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_011729.1\|WP_015956754.1\|5349432_5350086_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NC_011729.1\|WP_015956746.1\|5339662_5340949_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_157867652.1\|5335572_5336826_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NC_011729.1\|WP_041238426.1\|5353458_5354079_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.20616e-15
NC_011729.1\|WP_015956747.1\|5341094_5341493_-\|GxxExxY-protein	gnl\|CDD\|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	1.04369e-55
NC_011729.1\|WP_015956753.1\|5347320_5349198_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_011729.1\|WP_015956752.1\|5345606_5347169_-\|patatin	gnl\|CDD\|132846	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomonas. Even though VipD shows high sequence similarity with several functional regions of ExoU (e.g. oxyanion hole, active site serine, active site aspartate), it has been shown to have no phospholipase activity. This family includes ExoU from Pseudomonas aeruginosa and VipD of Legionella pneumophila.	1.36881e-39
NC_011729.1\|WP_015956755.1\|5350330_5352484_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_011729.1\|WP_015956749.1\|5343914_5344265_-\|translation-initiation-factor	gnl\|CDD\|236021	PRK07451, PRK07451, translation initiation factor.	1.75663e-67
NC_011729.1\|WP_015956750.1\|5344368_5345289_-\|PIN-domain-containing-protein	gnl\|CDD\|381259	cd08919, PBP-like, Phycobiliproteins (PBPs) and related proteins. phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC). This family also contains allophycocyanin-like (Apl) proteins, which conserve the residues critical for chromophore interactions, but may not maintain the proper alpha-beta subunit interactions and tertiary structure of PBPs. The genes encoding the Apl proteins cluster with light-responsive regulatory components, so these may have photoresponsive regulatory role(s). Included in this family is the PBP-like domain of the core-membrane linker polypeptide (LCM). The LCM serves both as a terminal energy acceptor and as a linker polypeptide. Its single phycocyanobilin (PCB) chromophore is one of two terminal energy transmitters, and transfers excitations from the hundreds of chromophores of the PBS to the RCs. This family also includes some proteins which have glutathione-S-transferases (GST) domains N-terminal to this PBP-like domain.	8.10608e-43
NC_011729.1\|WP_015956738.1\|5331397_5333170_+\|M61-family-metallopeptidase	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	0
NC_011729.1\|WP_015956739.1\|5333198_5334113_+\|branched-chain-amino-acid-transaminase	gnl\|CDD\|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	9.05316e-165
NC_011729.1\|WP_015956744.1\|5338024_5338804_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	2.08469e-94
NC_011729.1\|WP_015956743.1\|5337465_5337945_+\|hypothetical-protein	gnl\|CDD\|374405	pfam16166, TIC20, Chloroplast import apparatus Tic20-like. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognizes specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic20, a core member of the Tic complex. This protein is deeply embedded in the inner envelope membrane and is thought to function as a protein- conducting component of the Tic complex.	1.91154e-18
NC_011729.1\|WP_015956745.1\|5339105_5339636_+\|30S-ribosomal-protein-S6	gnl\|CDD\|275387	cd15487, bS6_chloro_cyano, 30S ribosomal protein S6 of chloroplasts and cyanobacteria. bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Mitochondrial and chloroplastic ribosomes are similar to bacterial ribosomes. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.	1.08119e-51
NC_011729.1\|WP_015956758.1\|5354249_5354690_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	8.27615e-36
NC_011729.1\|WP_015956754.1\|5349432_5350086_-\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.55604e-42
NC_011729.1\|WP_015956746.1\|5339662_5340949_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	2.19155e-67

>NC_011729.1|WP_015956747.1|5341094_5341493_-|GxxExxY-protein
MSYVSDKYPESQLTGKIIGCAMEVHRTLGNGFQEVIYQRALAIEMTHQKLSFSREHEMEIFYKGIPIGRRRVDFFVEEKIMVEIKAVIKLEDVHLAQAINYLEVYGLPIGLLINFGSRSLEFKRVMKPKSKL
>NC_011729.1|WP_015956746.1|5339662_5340949_-|PDZ-domain-containing-protein
MKKYTIKQIQQSLGLVSLVSIVAILVFSIHLILPVFSQDKSSNIQVFNQVWQTVQENFYDSNFNGVDWESMKQKYSDQVKSSQTKAELADVINQMLSELNTSHTHFYTPQQTQYYQLLGIFASGSPQLQEQLKQWFPTGEIEYSGIGIFTKEIDGQIFVSGVLDGLPAHQAGILVGDRIISVEGKPFDPVESFRNKAGQPVTLTIQRQSLPNPETSVTVVPKMLNANTMFSEAMKASIEVKQIQNKNIGYVHIWSYAGEQYQELLEDELFYGELRSADVLVLDLRGGWGGAPLTALNIYTAKPLSIKNVPRNRAGYTINATWNKPVIMIVDGGSRSSKEILAFAFKQQNIGLVVGSKTPGAVVAGRAFLMDDGSLLYVAVGDVYVYEKYRLEGQGVMPDIEVPFPLQYAQGKDAQKERAIEEALKAVE
>NC_011729.1|WP_015956745.1|5339105_5339636_+|30S-ribosomal-protein-S6
MTKSYEMVYILRPDLLEEQVQQEINRYRDFLTENEAQEVQIKYWGKRRLAYPIKKLQDGFYVQMNYQGDGKQIAPLERMMRLSDEVIRYLTIKLDKDQYTPNDSPPPEGIIDTPKPVIEPPKPAVESPKPAETTEETAEAVETVEPPAEPAEPVEAVETVDTTEETVEPVDTTSEE
>NC_011729.1|WP_015956744.1|5338024_5338804_-|fumarylacetoacetate-hydrolase-family-protein
MPQRYVRVKHLQEQIYYGVLLPDRSVKVLDAPPWLGGQTTELTLDPETYQMLAPVAPSKIIAVGKNYQAHAAEMGTSVPEEPLLFLKPPTTIIADTQPIYYPLQSQRVDYEGELAVIIGETTKNCSQAQARNKIWGYTIANDVTARDLQKKDGQWTRAKGFDSFCPLGPWIVRELSAGAKLQTFLNDSPQPRQSALITEMVFSPEVLVSYISQIMTLLPGDVILTGTPQGIGPMAAGDTVRVEIEGIGGLENPVVMASV
>NC_011729.1|WP_015956743.1|5337465_5337945_+|hypothetical-protein
MAWRGSADIKDRIFASLVYLLPLYYGFQFGSDLVQQFPIFSFLSILLIPMAFIVGAIPFGDFILFLVLYLAVVRNTRISHFIRYNTMQAILLDILVFLLGLVFPFVITALGDNIITQTLSNTIFLGTLIACLYCIIQSALGKYAEIPGISEAAYTQVRY
>NC_011729.1|WP_015956742.1|5337157_5337355_+|hypothetical-protein
MLVILTDEQILSTQQVCQGCLLANQEGSPRWHHGKLDCGHALRSSGNHKLALYQCQMGFKVANIE
>NC_011729.1|WP_157867652.1|5335572_5336826_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSDPAIAEMIQQELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPKKRYYGGCEYIDKVEQLAIDRAKQLFGAAHANVQPHSGAQANFAVFLALLEPGDTIMGMDLSHGGHLTHGSPVNVSGKWFRVVNYGVNRETEQLDYDLIREIALKEQPKLIICGYSAYPRIIQFDKFRAIADEVGAYLLADIAHIAGLVATGHHPSPIPHCHVVTTTTHKTLRGPRGGLILTADAELGKKFDKAVFPGTQGGPLEQVIAGKAVAFGEALKPEFKTYSGQVIANAQALANGLIKRGFKIVSNGTENHLMLVDLRSIGMTGKQADQLVSEVNITANKNTLPFDPESPFVTSGLRLGSPAMTTRGMKEAEFIEIANIIADRLLNPEDEAVKQDVKNRVAALCDRFPLYPHLNIPVAAIA
>NC_011729.1|WP_015956740.1|5334393_5334966_+|hypothetical-protein
MKKKDKIFTEIYKINESTNLCIIEIGIDQYADIFNKWDSAPFKRREVNPELEQYLERCSDEIPFRYPIELHFTFPEGIKDTQKEDKSRDGIKNHFTFRIYIVKRKLNRNNRRTLYCALAGSFFLGIVAIWKFTPERVLPSIIEQGLLIGGWVFLWEAVSLLFFVNYELYHSYRTYKRLRNAPIIFRELSY
>NC_011729.1|WP_015956739.1|5333198_5334113_+|branched-chain-amino-acid-transaminase
MHNFLPFAYFQNQFIPFDDAKISIATHALHYGTAAFGGLRGIPNPENPKQILLFRLDRHCQRLSQSAKFLHYQLPADKIEGILIDFVKKNKPTVPIYIRPLVYSSGLGIAPRLHNIDKDFLVYGLEMGEYLASDGINCRISSWYRQEDRSFPLRGKITAAYITSALAKTEAVESGFDEAILMNSQGKVCEATGMNIFIVRNGQLITPGFEQDILEGITRHSIITIAQELNIPVKERAIDKTELFIADEVFLCGTAAKITPVKRIENYTLPESNPITDQLKEKLTAITLNQDPNYKDWVYPIDID
>NC_011729.1|WP_015956738.1|5331397_5333170_+|M61-family-metallopeptidase
MTKATLDRQPNLTDIVPNLSYQVAMPQPNSHLFEVTFEVKGWQKKQLDLIMPVWTPGSYLVREYARLVQDFQAVSRAGQGLVSQKISKNRWQIDTEGVSDIKIHYRVFANELTVRTNHLDSTHGYFNGAALFFFIPELETYPITVTIIPPHPDWRVTTSLPPIADQENTYLANDFDTLVDSPFEIGIHQIYEFEVLEKSHKLAIWGQGNIKPQPLIKDIEKIIETEAQIFGGLPYEHYLFLLHLSAKSYGGLEHKDSCSLIYSRFGFRGKDAYHRFLQLVAHEFFHLWNVKRIRPKALERFDYERENYTTSLWFSEGTTSYYDSLIPCRAKIYDDQVLLDNFAKDITRYLQTPGRKVQPLSESSFDAWIKLYRRDANSDNNQMSYYLKGELVSLLLDLLIRSRHNNKRSLDDVMRLLWENFGKSEIGFTPEQLQEILESVAGIDLGNFLRKYIDGVDDLPFQEYFDPFGLELKPVCEEEATPCLGIKVQSENGKEIIKFVETGSPAEDSGIDAEDELLAIDGIKITADQLNERLKDYHVGDKIEVTVFHQDQLKTLSVELAAPQPSRYELIKIKNPSNIQSQNLAGWINS
>NC_011729.1|WP_015956749.1|5343914_5344265_-|translation-initiation-factor
MSSQGKSSKKDSAVYREFGNVDNSAALERSVPELPPQQQNIRVQATRSGRKGKTVTVITGFQSKPETLTKLLKDLKAKCGSGGTLKDNTLEIQGDHKQKILQVLTELGYKAKISGG
>NC_011729.1|WP_015956750.1|5344368_5345289_-|PIN-domain-containing-protein
MKYLIDADVILEYCLNREQFVKDTEYLWSLLESQKIEGFITESGLNKIEFYFSQLTSDEKAKNLIKDLKKLVKICPVDRYILDAARKSNLKDFEAAVEIECAIKFNCDAIIVWNYLDFEGASIEIILVNPLTFEPLQTVDFNKQQKKLEYEARYSNPSYLSSFDNAKLRAYVAEAEARVKAIEMINEIKDDLAKNSVNFCFEEYPHLKNPGEPQNSQVFIDKCYDEISRCLNLVLYCILCGDPYILTDRELSIAHPKLFPALNLPTDLYVAALTFCRDSVSVSRNLSKEVLKQYRSYLDYLINSLS
>NC_011729.1|WP_015956751.1|5345293_5345584_-|hypothetical-protein
MLEPSSIRHPEGYNRKIKEVKPGLYVVENAYEGEYVYFEKDSFSSAQNEQSSEEDLTGIGQKLRQQLGTDKTAPTSSTQYQTSSDKIDISKINVKP
>NC_011729.1|WP_015956752.1|5345606_5347169_-|patatin
MKAYAILAGGGVKGAALVGALSAAQERGINFVGYGGTSAGSIVALLATVGYTAEELKPIMINELNFPDFLDDSQDELEQLKTNLEQLFQFIKETIRQGINWWNFPERIKLISKLLEAFQNLNQNLGLCDANGVKKFLLEKIGNKIPQLNNRTDITFQDLINHNCHSLKVVATDLASRKAVIYPSEEDGGYNYSVIDAVRSSMSFPFVFRPLKFNKRFLVDGGLSSNLPIFLFEQEKKQNNYPVMAFDLVVDTSSTEVTDNNDYGLLKFSGDMLSTVLEASDELFIDFAIKNTYLIRIPIAKDIGTLDFSLSQGNKERLFDRGYQCTNSYLNEVVFQAWNEAETKREKMRALFGRIDLIEKLLEKVAKEVEDYTSAKNVRAYIMLPTQETTLIAAYQYGMDDDPDIDWEIPLNSCCYGQVWLNKQPAFVEIDKMRKNLSGYNLTKIQSNKIRSDRTAIYCVPIYDIRNQSLNSKTFDNLENLAILSVDTSTPLENTLWLEENSRIDDILELWADTLSYVLS
>NC_011729.1|WP_015956753.1|5347320_5349198_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MSIKDRPPSRSRQIGNILFFVAGLFLLINLLFPQLFGPSIPRVPYSLFIDQVQDGEVAKVYVGQNEIRYQLKGEQDQLGQIFSTTPIFDLELPKRLEDKGIEFAAAPPPKNNWIGSILSWVIPPLIFVAIWQFFLGRAGGGGTAGALSFTKSKAKVYVEEDATRVTFEDVAGVDEAKIELAEIVGFLKSPQRYNAIGARIPRGVLLVGPPGTGKTLLAKAVAGEAKVPFFSISGSEFVELFVGAGAARVRDLFEQAKKKAPCIIFIDELDAIGKSRAGNGFVGGNDEREQTLNQLLTEMDGFSAGDATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLSGRLKILEIYAQKVKLDKDVDLKEIATRTPGFAGADLANLINEAALLAARNERTTVGQEDLREAIERIVAGLEKKSRVLSEKEKKIVAYHEVGHALVGALMPGGGKVAKISIVPRGMAALGYTLQMPTEDRFLMDESELRDQIATLLGGRAAEEIIFGSITTGAANDLQRATDLAERMVTTYGMSKVLGPLAYEKGQSNNFLGNDMMNPRRMVSDDTAKAIDDEVKEIVENAHQKALAILKHNQGLLEEIAQKILEQEVIEGDQLQEYLNRVQSGDGKVTVSV
>NC_011729.1|WP_015956754.1|5349432_5350086_-|L,D-transpeptidase
MVKSHYIFILFLLTGFGVAEGVFNQPTLASEVETTDVSVDKTSTELNSVIPIEEKTPLPVEEVPTQPSNVEPPEKEAIIIEPEIIPEEIETRLVLKLRERRVYVYQGDQEIGNYPVAVGKKGWETPTGDFAVMQMIVNPSWQNPWNGRIVPAGPKNPLGERWIGFWTDGKNFIGFHGTAAEHLIGQAVSHGCVRMRNSDIKALYEHIKLGTSVVVVP
>NC_011729.1|WP_015956755.1|5350330_5352484_+|glycine--tRNA-ligase-subunit-beta
MPSFLLEVGTEELPANFVDEAIAQWQSRIPSSLEEQQLTPEGIEFYGTPRRLAVLIKGLPAKQSDRIEEVKGPAANVAFKSGKPTKALEGFVRKQGVTPDEVEIRDTDKGEFVFVQKNITGRNTTEILQELVPQWITQLEGRRFMRWGDGDLRFPRPIRWLVTLWDQDILPLELVNGATQVKSDRLTYGHRILAPESVSIPEASAYQKSLQQAYVEVSPLQRRQTIEQQIEKVAKQLKGVAVIPPDLLDEVVNLVEYPSAVAGNFEPDFLNLPTEVITTVMVTHQRYFPVKATGKTNKNNTLLPYFITISNGDPNKGEIIAAGNERVIRARLADAQFFYKADCDEPLESYLPQLETVTFQEQLGTIRDKVDRIMEISQLIADQLDLDSGERSEIESTAMLCKADLVTQMVYEFPELQGVMGQKYALASGESPNVALGIFEHYLPRGADDIMPESLTGQVVGLADRIDTIVSIFGLGMIPTGSGDPFALRRAATGIIKVTWYAELPIDILDLLEQSSQDFVTAHPDKTSPIESLKSFFIQRLSTLLQDDLHIDYDLVNAVLGENDPEYTERALRDLLDVRDRAQFLQSIRNNQKIDEIYETVNRSARLAVKGELDTQELDPEKVIRPALFEKSSEEHFYKVLIDLVPTTLTAQRERNYQLLVDALGKIAPTVSNFFDGEDSVLVMDENLEVRENRLNLLGLLRNHARVLADFGAIVKS
>NC_011729.1|WP_015956756.1|5352524_5353151_-|hypothetical-protein
MTYTNEPIGRVTDRQVPVTVKSYHDRVRWGPIIAGLVVALSTQLILSSLGAAIGLSGLSGSGAPRTEAGDVGSAIGIWSIISLFISLFIGGWVTTRCCGPLNRSTALLNGAILWASTLAIGSWLLASGISGAFGVAASNAGEIINQGVNIPNNPNITAEQTRDIAGNIAKANWYFTFGSLIGLIAALIGAALGAHTPRTNTNTNHEVY
>NC_011729.1|WP_041238426.1|5353458_5354079_-|alpha/beta-hydrolase
MNPIIKSCYLSIRGAKIHYLEAGKPRENPIILLHGASFNAQTWGQIGTLQLLAEKGYYALAIDLPGYGNSQSLSVPKEAFLLLLLEELKLQQPMIVSPSMSGSYSLPLISQYPEKVGSFVAVAPVDIPKYRQQLQGVQIPTLALWGSNDRIVPINNANLLIELMPNTQKVILKNAGHACYMRATEQFHHHLIQFFQKNEDILLQTQ
>NC_011729.1|WP_015956758.1|5354249_5354690_-|Hsp20/alpha-crystallin-family-protein
MPIIRYSPFQEIETLQRQMNRLFDDMFLSNQTEEQKFNFVPAAELTETDEALHLKLEIPGMDAKDLDIQVMKDTVSISGERKEETKTENNGVTRSEFRYGKFERVIPLPKKIQNTNVTADYKDGILTLTLPKDEEEQNRVFKVNLG

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Crispr_ID: NC_011729_44

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_44

5376812-5376964

Orphan

N:A

Consensus_repeat	Method
AGAGGATATGATTTTAGTAGGACTTGTGTTTTGAGCAATTTCCTTTAATTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_44

>merge|NC_011729|44|5376812-5376964|CRISPRCasFinder
AGAGGATATGATTTTAGTAGGACTTGTGTTTTGAGCAATTTCCTTTAATTTTAACTGGGGAGAGGGCTAGAGCAACTACTACGAACTTCTTCTTTTATCAGAGGATATGATTTTAGTAGGACTTGTGTTTTGAGCAATTTCCTTTAATTTTAA

>NC_011729|44|40|5376812-5376964|CRISPRCasFinder
AGAGGATATGATTTTAGTAGGACTTGTGTTTTGAGCAATTTCCTTTAATTTTAA	CTGGGGAGAGGGCTAGAGCAACTACTACGAACTTCTTCTTTTATC
AGAGGATATGATTTTAGTAGGACTTGTGTTTTGAGCAATTTCCTTTAATTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956770.1\|5366213_5367098_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NC_011729.1\|WP_015956775.1\|5370576_5372160_-\|DGQHR-domain-containing-protein	unknown	unknown	gnl\|CDD\|319271
NC_011729.1\|WP_015956776.1\|5372523_5373273_+\|DGQHR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379453
NC_011729.1\|WP_015956771.1\|5367347_5368262_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_011729.1\|WP_015956780.1\|5376997_5378392_-\|carotenoid-oxygenase	unknown	unknown	gnl\|CDD\|226196
NC_011729.1\|WP_015956779.1\|5375119_5376745_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	unknown	unknown	gnl\|CDD\|235877
NC_011729.1\|WP_015956781.1\|5378758_5380765_+\|DNA-sulfur-modification-protein-DndD	unknown	unknown	gnl\|CDD\|274475
NC_011729.1\|WP_015956783.1\|5381507_5381906_+\|DNA-sulfur-modification-protein-DndE	unknown	unknown	gnl\|CDD\|378074
NC_011729.1\|WP_015956785.1\|5382736_5383555_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|273235
NC_011729.1\|WP_015956787.1\|5383682_5384126_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956774.1\|5370287_5370488_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368559
NC_011729.1\|WP_015956772.1\|5368532_5368895_+\|DUF1823-family-protein	unknown	unknown	gnl\|CDD\|370156
NC_011729.1\|WP_015956773.1\|5368944_5370087_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NC_011729.1\|WP_015956784.1\|5382004_5382673_+\|PRC-barrel-domain-containing-protein	unknown	unknown	unknown
NC_011729.1\|WP_157867486.1\|5384460_5384697_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956778.1\|5373853_5375029_-\|DGQHR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379453
NC_011729.1\|WP_015956788.1\|5384216_5384429_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956782.1\|5380771_5381347_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|319862
NC_011729.1\|WP_015956777.1\|5373447_5373804_+\|DUF2887-domain-containing-protein	unknown	unknown	gnl\|CDD\|227751
NC_011729.1\|WP_157867653.1\|5384995_5385841_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956770.1\|5366213_5367098_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	5.439e-38
NC_011729.1\|WP_015956775.1\|5370576_5372160_-\|DGQHR-domain-containing-protein	gnl\|CDD\|319271	cd16414, dndB_like, DNA-sulfur modification-associated domain. Family of proteins related to dndB. dndB acts in the regulation of DNA modifications, including DNA phosphorothioation. Both have a conserved DGQHR sequence motif. These proteins show similarity to the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system, and other members of the ParB/Srx superfamily.	4.47009e-51
NC_011729.1\|WP_015956776.1\|5372523_5373273_+\|DGQHR-domain-containing-protein	gnl\|CDD\|379453	pfam14072, DndB, DNA-sulfur modification-associated. This is family of bacterial proteins likely to be necessary for binding to DNA and recognising the modification sites. Members are found in bacteria, archaea and on viral plasmids, and are typically between 354 and 474 amino acids in length. There is a conserved DGQHR sequence motif.	5.67519e-104
NC_011729.1\|WP_015956771.1\|5367347_5368262_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.28534e-12
NC_011729.1\|WP_015956780.1\|5376997_5378392_-\|carotenoid-oxygenase	gnl\|CDD\|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.07323e-166
NC_011729.1\|WP_015956779.1\|5375119_5376745_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	gnl\|CDD\|235877	PRK06850, PRK06850, hypothetical protein; Provisional.	0
NC_011729.1\|WP_015956781.1\|5378758_5380765_+\|DNA-sulfur-modification-protein-DndD	gnl\|CDD\|274475	TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. [DNA metabolism, Restriction/modification].	0
NC_011729.1\|WP_015956783.1\|5381507_5381906_+\|DNA-sulfur-modification-protein-DndE	gnl\|CDD\|378074	pfam08870, DndE, DNA sulphur modification protein DndE. DndE is a small protein of 126 residues. It is a putative carboxylase homologous to NCAIR synthetase. It is encoded by an operon that is associated with a sulphur-based modification to DNA.	3.26536e-59
NC_011729.1\|WP_015956785.1\|5382736_5383555_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|273235	TIGR00726, Laccase_domain_protein, YfiH family protein. PSI-BLAST converges on members of this family of uncharacterized bacterial proteins and shows no significant similarity to any characterized protein. No completed genome to date has two members. Members of the family have been crystallized but the function is unknown. [Unknown function, General].	1.40917e-64
NC_011729.1\|WP_015956774.1\|5370287_5370488_-\|hypothetical-protein	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.64644e-05
NC_011729.1\|WP_015956772.1\|5368532_5368895_+\|DUF1823-family-protein	gnl\|CDD\|370156	pfam08853, DUF1823, Domain of unknown function (DUF1823). This presumed domain is functionally uncharacterized.	1.02697e-73
NC_011729.1\|WP_015956773.1\|5368944_5370087_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NC_011729.1\|WP_015956778.1\|5373853_5375029_-\|DGQHR-domain-containing-protein	gnl\|CDD\|379453	pfam14072, DndB, DNA-sulfur modification-associated. This is family of bacterial proteins likely to be necessary for binding to DNA and recognising the modification sites. Members are found in bacteria, archaea and on viral plasmids, and are typically between 354 and 474 amino acids in length. There is a conserved DGQHR sequence motif.	1.91349e-111
NC_011729.1\|WP_015956782.1\|5380771_5381347_+\|GUN4-domain-containing-protein	gnl\|CDD\|319862	cd16383, GUN4, porphyrin-binding protein domain GUN4. GUN4 is a porphyrin-binding protein involved in chlorophyll biosynthesis regulation and intracellular signaling, found in aerobic photosynthetic organisms. It has been implicated in retrograde signalling between the chloroplast and nucleus. GUN4 can bind protoporphyrin IX (PIX) and magnesium protoporphyrin IX (MgPIX), substrate and product of the Mg-chelatase, as well as heme and cobalt protoporphyrin IX (CoPIX). It may play a role in protecting plants from reactive oxygen species (ROS)-mediated damage.	3.54782e-54
NC_011729.1\|WP_015956777.1\|5373447_5373804_+\|DUF2887-domain-containing-protein	gnl\|CDD\|227751	COG5464, COG5464, Uncharacterized conserved protein [Function unknown].	7.45352e-11
NC_011729.1\|WP_157867653.1\|5384995_5385841_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	7.9318e-57

>NC_011729.1|WP_015956779.1|5375119_5376745_+|DNA-phosphorothioation-system-sulfurtransferase-DndC
MTTSSTPLFPLRNVSQLVEDIENLTQEIQQLYCQDDIPWIVGVSWGKDSTAVLQLIWNAIASLPLEKRHKTIHVITTDTFVENPIVSAWVRKCIKNLKEATKQQNMPVKPHLLHPSLKETFWVCLIGRGYPAPRNGFRWCTDRMKIQPVNYFIRDMVRAHGETIIVLGARKAESSIRAATLKKHTAGRLRDHLSPNPRLINSVVYTPIEDWRNDEVWIYLMQWENPWGHSNKELFAMYRGATADKECPLVVDTSTPSCGDSRLGCWVCTMVNKDKSMEAMIQNDEEKEWLQPLLDLRNELDIQDDRDKRDFRRIYGRVELFGSDKIEPIPGPYTKYWREHWLRRVLQAQVEVRQNAPEDMKDITLITMEELSEIRRIWLEEKHEFDDSLPRIYEEVTGQPFEDPRPGVGNRLLGSDEWDVLAEICGDDGMHLELMAKLLDTERQYYTKSRRTGIYGDLEKCFDTSSRSKDDAIGNAHLKRNLKTAVEDGDIESIKQQLTDDNSHKDIKTVKEKLKSNPPQNHQQQLSLSWGSIKFGNQPSE
>NC_011729.1|WP_015956778.1|5373853_5375029_-|DGQHR-domain-containing-protein
MMSEFNDDHDHTPRLDELLEPYFAQYYRQKCYIGLIFEQGKRKMIQINVPAHDLPTLLQAKPSTNNDPDSGKNRPVIKGHAEEVKQYILKRAKQNKPWILGTLTANIDPKDLTLIELGRGICLVIIDRGVKLDITDGQHRKQAIHELIESPDAKLIGDNDFPITLVLEADFNQCQTDFRDMAQTKNLDKSLLLSFGEFEGKVGITKNLIEKVPMFLNKTEKIKNSPASKQKLIYTSNYIAKLASCAFVNNDKNELEDYEVEQASQALINCLNQFFSTCHQTQFIAETRVEDLTVNQIMEFKEKCILGKSVGLEILGRLLYLTYDKSNNTFVPEKVSQIAQIDWSISSNLWQGNIVKHDPNPVNTAKAYKISGGIIPTKMAVNTAKAALGWQ
>NC_011729.1|WP_015956777.1|5373447_5373804_+|DUF2887-domain-containing-protein
MALEKGRQLVEDVDKIEDEDERFKIMELLDTLIAYKFNNLTQEELREMFGLDEFKKSRLYQDIYQEGEKEGKQEGKQETKLEMVDALFRRGFSVEDIADIVQLDIDTVRLRVQKVQDN
>NC_011729.1|WP_015956776.1|5372523_5373273_+|DGQHR-domain-containing-protein
MPTFEYVLPVIRGIQAGREYYVSMCPLGILPKLFPLSGEEVHPERRSQRRVNSSRVKQLSQYVFKNRTDYILSAITASIDADVVFEPLGEKGEERKMGRLRIPMDGELTIQDGLHRRVALEKVLKENPELSYEAIAVIFFLDIGLDRCQQMFKDLNSYGMRSSLSLAVLYDHRDKMAVVTRKVLERVGKLRELTEVERDSLGKNSLKLFTLYQVYQETVRVLGNDGDKGLDEQVELGVKYWQEKLFING
>NC_011729.1|WP_015956775.1|5370576_5372160_-|DGQHR-domain-containing-protein
MDTDLASQILQRENQEKQALALLLDRYLSKSDRLLVQKTQMGTSEAYLGSVTLEWLASRICFASQLPLFQQKFDPKTHNIIRDSQTIEQLQQRPLDWSRQAHLAQYLATRKHHKFPPILAVISPHWVNDPNTPQWENDRAQTSAVNFTPLDPQGNLGLLDISDNYSIFALDGQHRLMGIQGLMELIKTGRLELYNKTKKAIGTEITTEDLIETYDLSLTHLHNLAKEKIGVEFIPAVLTGETHEEARRRVRSIFVHVNRMAVILSKGQLALLNEDDGFAIVARQLAITHPLLKDREQDDWQARVNWDSATISSKSTVLTTLQALQDMSEGYLSHQYPHWQPKNKKQIIPLRPEDEELEEALDLFSQLFNYLGNLPSYRQLENGTKTYQIRRFSHEVGKGQGNLLFRPVGQIALAQALGILVFKNQISLDSLFQKLNTFDETGGFSGLEKPSSLWYGILYDIQKKRILIAGRKLAVKLITYLLGGIEAEKEINQLHQEIIQARTIENKTIGFNGEWTTPNNIKLPKTL
>NC_011729.1|WP_015956774.1|5370287_5370488_-|hypothetical-protein
MVKTPIQLTFEEYITYRDDTDNRYELEDGILIEMPPASKRHSDITEKQSLNSQIFPQLNLSVNQIL
>NC_011729.1|WP_015956773.1|5368944_5370087_+|8-amino-7-oxononanoate-synthase
MTNPYNWIEKSLETLHKANWYRSVKTIHSRSGSVVNLKGNLVINFASNDYLGLAGDERLINASIDAIKQYGTGSTGSRLLSGHRPIHRELENAIASFKQTEDAIVFSSGYLANLGTITALVGQRDLILGDEYNHSSLKNGSKLSGATVLDYEHGNLEDLNTKLVNYRRSYRRCLILTDTVFSMDGDICPLPQLLDLAEDFNCMVLVDEAHATGVMGKTGAGCVEHLNCSGRELIQMGTLSKALGSLGGYVAGSFQLVEFLRNRAATWIYTTGLSPGDTAAALTALNIIQAEPQRRQQLWENVGLLKEQLSGFNLFPSETPIICLGLNTPTEALILAQKLQDGGIFAPAIRPPTVPTSRIRFTLMATHQPCHFQRLGAVIR
>NC_011729.1|WP_015956772.1|5368532_5368895_+|DUF1823-family-protein
MTNLPPLNTDTIWAILNEEIDDTTANQLVWYYLGYRYDESKGSWDNTHVAEEWKTDYPEPPDFIAFRPPTVKLTRSIPAEKKNLLKEKLGFKGYKVGEFTPAQARRATMANWLLGVMDNG
>NC_011729.1|WP_015956771.1|5367347_5368262_-|DMT-family-transporter
MTKIATPPQTWKVTTILSIGVLAVSTAAIFIRLCFEAGGVEGVGFSLFISASRLLIASILLLPSWGKLKQTQVEPVAYYYAVGAGCCLGLHFASWTTSLSFTSIAASTTLVTTIPIWVSLLSWVWYREKPTKPVIFGIIIAIMGGILIAVGDTNTGRENSNPLLGDFLALLGAWMTSLYLLLGREAQNRGLTIGNYIVIAYSSAAVFLFPLPFLFETGYLGYPTEVYLYVGLMAILSQLIGHTSLNWAVRWISPTLVTLAILCEPIISSLLGWLIFGEIPSKLVIVGGIILLIGVATATFKTAP
>NC_011729.1|WP_015956770.1|5366213_5367098_-|glycosyltransferase-family-2-protein
MNTRTKDPVYIIIPVHNRKAITLKCLETLSQNGDLHRYHVVVVDDGSTDGTSDAIHSLYPEVTVLNGDGNLWWTGAIKKGMEYAYNQNAQYIIWLNDDCYPQKGSIDQLLDLCQSNPKLIVGGQSLDPDTLEPSYGGIIRNNYLIKEIHTQEKTIVDCDGLNGNLVCFSRQVINTIGYPNYQIFPHYHGDTTYTNLAKRKGYQVIIFGEAIALCKNDHPQVCWLLPERPLLNYWQDYFKIKSASYWKAEINYYKAILGSSGIIIYLYQKIIKFWIFVLIGTIIPLKFRQQFKKN
>NC_011729.1|WP_015956780.1|5376997_5378392_-|carotenoid-oxygenase
MVEQRAIAQQNPFLAGNFAPVRTEITTPLQVIGQIPPNLKGSFLRNGPNAQYDPIGKYHLFDGDGMLHQVEFNGGEPIYRNRYVRTKGFLQEQQAGKPLYTGLLEPNNSNPEYSYKNVSNTALVYHSEKLLSLWEGGEPYLIDIANLDTLKPETFDGKLNIPFTAHPKVDPVTGEMMFIGYTMGTPPFLYYGIISAEGKLTKIIPIELPVGVMIHDFAITQNYTIFPNLPLTLRPERIAKGQPAFQFETETPSYFGILPRHAPPEEIRWFETESCFIFHTLNAYEEGDEIILIACRMEATNVLGATDNPEKAKRGDIPILTKWRFNLQDNSVKEEALDQIPSEFPTLNPAYVGRKNRYGYTASMKPDIVPLFDGVIKYDLETGEISRYYYGSGRYGGEVVFAANPDGNGEDDGWLMTFVYDESDNSSELVILSAQNLNSEPIARIPIPRRVPYGFHGVWVSQQA
>NC_011729.1|WP_015956781.1|5378758_5380765_+|DNA-sulfur-modification-protein-DndD
MIFTELILENFGPYAGKHIINLRPEIEENTRPIILFGGMNGGGKTTLMDAIRLALYGSRAQCSTRGNLGYSDFLTQSVNSQTPPYEKARIYLSFELFQEDELVEITVNRYWERNPVEGKDHLGIIRTVSGQESLDTGLANTWDEYIETLLPLGISNLFLFDGEQVKELAEQDIPPQPVIEAIQSLLGLGLAEKLAIDLEVLVSRKRKQVAKGLQLDNLEKIEAKLKQHYQEEELAKEELGKLTNHLKRAQNKEKLAEEKFRVEGGKIAAKKTKLDLEKKDLETSLDTLRKNLTQLAAGVLPLGLITPLLQQVQNLGEQDLKSQQFKMAQSILKERDERLLSYLNQLNLKSDNLEKINNFLSQENQQLTEEYGIESWLNLNEEDLKQLNDLLNLQLPLQLNLAQEQLSRLHHLETELESKEKELVLSASPEDYDKLDKALQEAKQEVRKCQTAYDLCNHRCQEIQKAIKKTKQELEKYSQDALDYKNDEHLIKSAARVQETLKLFKERLTLKKLNKLEGEVTECFRYLLHKSDLVHRVAIDTQNFSLSLYDPTGKVIPKHRLSAGEKQLLAIAFLWGLARVSGRNLPVAIDTPLGRLDSSHRNNLVERYFPTASHQVILLSTDTEIGKTEVQKLREIDAIAKEYLLKYDSSQRQTTVHPNSYFWPTEKE
>NC_011729.1|WP_015956782.1|5380771_5381347_+|GUN4-domain-containing-protein
MEDQQEILTQLAEIKSQLNQLSELSTRLAWIEETLLLVGDIYRYETLQKALRDGDWFEADIETNKLILELTNKDKDNLKPEDIQTFPPAPLKVINQLWLKYSQGKFGFSVQLKLYKSVGGTLETTIAKDQKLIEKWGEQLGWRKDHQWRKCEDLDYSLNAPEGCHPSQWWNSPYGSKMTNYFLARLMKVDL
>NC_011729.1|WP_015956783.1|5381507_5381906_+|DNA-sulfur-modification-protein-DndE
MESPIERIYISQTAREQLIKLKRYTKIDNWNILCRWAFCRSLAEPSIPSPVPLPPNSNIEMSWQVFGGEIADMLLIALKQRCYNDGLGTDQETLAHQFRLHLHRGIGYLAGDINLKKIEHLIIKGVEGIDQG
>NC_011729.1|WP_015956784.1|5382004_5382673_+|PRC-barrel-domain-containing-protein
MTNQPKVQIPINGDVICGDEKCGKSSHIIINPVIQAVTHIVVKDSNLPESNRRIVPIEKIKETTAESLTLNCTPEELAQMPPFTETHYIKPDNNTLAMLSLERYEETMLSDPFILPYVTPMVDIETIPVEQELIPPGELAVHRGAEVWATDGQVGRVDEFLVEPKRGHITHLIMKEGHLWMTKTIAIPLKAIEKMEEETVYLKLDKKAVESFPEINVKRSFF
>NC_011729.1|WP_015956785.1|5382736_5383555_+|peptidoglycan-editing-factor-PgeF
MILSYIPETQTSTWQWQNWNGLSYLTCSLLQNWPHGFFSAQFYPRLPEDLVEVLDPNASVYRVRQVHDQRVLTPTEIETALLDQTLEEKYPPADGIITDHPQQSIWVASADCTPVLIADVKTGKTAAIHAGWRGTAKKIVPEAISRFLSFGSQLENLRVAMGPAIAGEVYQVSLEVALEVGSSVMDIDPSESTETRLERLHQIPFSPILEDQEPGRVRLDVRRVNYIQLQQLGISPDQIAIASYCTYQQPEHFFSYRRTKEKKVQWSGIVSL
>NC_011729.1|WP_015956787.1|5383682_5384126_-|hypothetical-protein
MKNNSDQNSPLCPSARPEIEGSRVFGIITGTVENPHVTYLKQSLPVTEELMAMSAPVTPTEVFRTAAPCIQNGCRHFDGQNCRLAMRVVEQLTVVEEHLPPCSIRKECRWFQQEGKAACLRCPQVITDNYNASDLVRQVATGIINNE
>NC_011729.1|WP_015956788.1|5384216_5384429_-|hypothetical-protein
MSQIQITDLIGEAVANATERRKQGMADLNADQLNTITGGAFLSSVIIAGMFPPIQTFESFKAPSLTASFG
>NC_011729.1|WP_157867486.1|5384460_5384697_-|hypothetical-protein
MDYIINIKQENNYLLPVKTMAHIQISDLINQAVDNATERRNRGIKKAGLSDLSPQEMNQINGGKLSEVYRIILGLFFD
>NC_011729.1|WP_157867653.1|5384995_5385841_+|tyrosine-type-recombinase/integrase
MYAVSDACTDTQLVSIWLAGKSKTSQNTYASHIKQFLEYVGKPLKELKLEDMQLWVSSLENSQRYKTATLKLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETEVTTLIEKANQNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVVLIPEKLWLDIQQLPKTDDAVFISRKKNRISRKTVHYMIKQYAKQAGINGNVSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLSITSRYLHARPNEGSSQFIQDI

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Crispr_ID: NC_011729_45

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_45

5399751-5399876

Orphan

N:A

Consensus_repeat	Method
CCTTCATCAGCGATAAAAGTTTCCATTTGATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011729_45

>merge|NC_011729|45|5399751-5399876|CRISPRCasFinder
CCTTCATCAGCGATAAAAGTTTCCATTTGATAAATTGAGAAATCATCAGAGGGAGTCTCTTGAGAACGGTAATCTTCAATGACGGTTTCTGCCCCTTCATCAGCGATAAAGGTTTCCATTTGATAA

>NC_011729|45|41|5399751-5399876|CRISPRCasFinder
CCTTCATCAGCGATAAAAGTTTCCATTTGATAA	ATTGAGAAATCATCAGAGGGAGTCTCTTGAGAACGGTAATCTTCAATGACGGTTTCTGCC
CCTTCATCAGCGATAAAGGTTTCCATTTGATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956795.1\|5388929_5390273_+\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|109787
NC_011729.1\|WP_015956810.1\|5406086_5408141_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_011729.1\|WP_015956804.1\|5398601_5399573_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275017
NC_011729.1\|WP_015956813.1\|5410611_5410953_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956802.1\|5396858_5397134_-\|DUF3493-domain-containing-protein	unknown	unknown	gnl\|CDD\|371841
NC_011729.1\|WP_015956814.1\|5411155_5411929_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NC_011729.1\|WP_015956809.1\|5405801_5406011_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956812.1\|5409535_5410432_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NC_011729.1\|WP_015956797.1\|5391222_5391732_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956811.1\|5408485_5409505_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_011729.1\|WP_015956808.1\|5403852_5405562_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|227621
NC_011729.1\|WP_015956806.1\|5401246_5401456_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956800.1\|5393441_5396114_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NC_011729.1\|WP_015956807.1\|5401893_5403831_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225885
NC_011729.1\|WP_015956796.1\|5390431_5390644_+\|DUF2949-domain-containing-protein	unknown	unknown	gnl\|CDD\|371402
NC_011729.1\|WP_162040066.1\|5412338_5412596_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956798.1\|5391822_5392290_-\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956803.1\|5397521_5398460_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275017
NC_011729.1\|WP_015956799.1\|5392555_5393212_-\|DUF3386-domain-containing-protein	unknown	unknown	gnl\|CDD\|371771
NC_011729.1\|WP_015956794.1\|5388118_5388943_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956795.1\|5388929_5390273_+\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|109787	pfam00743, FMO-like, Flavin-binding monooxygenase-like. This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases.	1.44453e-61
NC_011729.1\|WP_015956810.1\|5406086_5408141_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	5.09439e-125
NC_011729.1\|WP_015956804.1\|5398601_5399573_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|275017	TIGR04155, hypothetical_protein, PEP-CTERM protein sorting domain, cyanobacterial subclass. This domain model describes a subclass with family TIGR02595 of PEP-CTERM protein sorting signals associated with bacterial exosortases. This subclass is restricted to Cyanobacteria, including the genera Cyanothece, Nostoc, Trichodesmium, Lyngbya, Arthospira, etc. This PEP-CTERM subclass features strongly conserved residues within the transmembrane region, including a Gx4GxG motif. Model TIGR03763 describes a corresponding cyanobacterial form of exosortase found in most species with this domain.	0.00219379
NC_011729.1\|WP_015956802.1\|5396858_5397134_-\|DUF3493-domain-containing-protein	gnl\|CDD\|371841	pfam11998, DUF3493, Protein of unknown function (DUF3493). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.	8.73569e-32
NC_011729.1\|WP_015956814.1\|5411155_5411929_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.35938e-142
NC_011729.1\|WP_015956812.1\|5409535_5410432_+\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.89108e-28
NC_011729.1\|WP_015956811.1\|5408485_5409505_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.28319e-106
NC_011729.1\|WP_015956808.1\|5403852_5405562_+\|glycosyl-transferase	gnl\|CDD\|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	2.70018e-64
NC_011729.1\|WP_015956800.1\|5393441_5396114_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_011729.1\|WP_015956807.1\|5401893_5403831_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225885	COG3349, COG3349, Uncharacterized conserved protein [Function unknown].	9.53556e-56
NC_011729.1\|WP_015956796.1\|5390431_5390644_+\|DUF2949-domain-containing-protein	gnl\|CDD\|371402	pfam11165, DUF2949, Protein of unknown function (DUF2949). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	7.94918e-22
NC_011729.1\|WP_015956803.1\|5397521_5398460_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|275017	TIGR04155, hypothetical_protein, PEP-CTERM protein sorting domain, cyanobacterial subclass. This domain model describes a subclass with family TIGR02595 of PEP-CTERM protein sorting signals associated with bacterial exosortases. This subclass is restricted to Cyanobacteria, including the genera Cyanothece, Nostoc, Trichodesmium, Lyngbya, Arthospira, etc. This PEP-CTERM subclass features strongly conserved residues within the transmembrane region, including a Gx4GxG motif. Model TIGR03763 describes a corresponding cyanobacterial form of exosortase found in most species with this domain.	1.52667e-07
NC_011729.1\|WP_015956799.1\|5392555_5393212_-\|DUF3386-domain-containing-protein	gnl\|CDD\|371771	pfam11866, DUF3386, Protein of unknown function (DUF3386). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 220 amino acids in length.	5.03447e-123
NC_011729.1\|WP_015956794.1\|5388118_5388943_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	2.57284e-59

>NC_011729.1|WP_015956804.1|5398601_5399573_+|PEP-CTERM-sorting-domain-containing-protein
MLSKKTQIASYCLAIITTVSTPLTALASSIYYIGNSLTDTVSYQDFSKLVKQQLKKEQPWGRHMIPGAPLEWIWNHPDQGFRQRPYGHYPEALNNYSWDFLSLQPFRRPLEKDVEIASRFINLAKAQNPNVQVLIHSNWVRRDKQGTSYSELWDKEYKEKAKNTLTRDYINKFTTALQEANPNLKEPIIVPIGEVLYQLDQQMRAGKVPGFNNIFDIYADQIHLDERGKYLTMMTYLATMYRVNPATLDGSAIVNLDNKVKQIFDQTIWQVVNQKPLSNSENSEVSSPNSKAFPLINIGAGFVGVGTAIGLGVFLKRKLSKNQ
>NC_011729.1|WP_015956803.1|5397521_5398460_+|PEP-CTERM-sorting-domain-containing-protein
MWAKKIKLASYGLAIISAIVATPLSALASSIYYIGNSLTDSISYQNFSNIVNEQLGEEQPWGRHIIFGAPLEWIWNHPDRGLSQRPYGRYPTALNNYSWDFLSLQPFDRSLLNDIEYASRFINLAKAQNPDVQVLIHGRWLKRDKQGTSYSELWDRLYTNPESFKKSFTRDYLEQLTTSLGEADLNIKDPILVPIGEVMYELDQKMTKGKIPGFDSIFDIYIDRVHLDNRGRYLTTMTYLATMYGVNPATLDGSAIANLDPKIKQVFDRTIWEVVNESSFTNSEPVPEPFTFFGVGTALTLGMFFKRKISKP
>NC_011729.1|WP_015956802.1|5396858_5397134_-|DUF3493-domain-containing-protein
MSNNRPQKPNPRTQLDPEKYARLKAEAKAPYKGFRMFFYIAFGASGFIGAVIFLAQLVAGRNVSSALPNFALQVGLVALMIWLFRLEQKSP
>NC_011729.1|WP_015956800.1|5393441_5396114_+|ATP-dependent-chaperone-ClpB
MQPTDSSKFTEQAWDAIVKSQEVARRYKNQTLEIEHLVIALLEQEKGLAGRILNRAQIDSIRLKQQLETFATRQPKFMSVDQLYLGRSLDIMLDRADASRESWQDKFISVEHLLIGFAEDERIGRRSLKGFNLDPQDLEAHIKAIRGTQKVVEPNQEDRYEALVKYGRDLTEQAKEGKLDPVIGRDDEIRRVVQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIVNGDVPESLKNRQLISLDMGSLIAGAKYRGEFEERLRTVMKEVTQSDGQIILFIDELHTVVGAGSREGGSMDAGNLLKPMLARGELHCIGASTLDEYRKHIEKDPALERRFQQVYVKQPSVEDTISILRGLKERYEVHHGVKITDSALVAAATLSHRYITDRFLPDKAIDLVDEAAAKLKMEITSKPVELEGIDRRLMQLQMEKLSLEGEEKRPGMLTVDRASKERLDRIQQEIEELESQQKELSSQWQGEKQLLDEINALKEEEEQLRLQVEQAERAYDLNKAAQLKYGKLQVLEQEIESKEVKLLELQAQGTCLLREQVTESDIAEIVARWTGIPINRLLETERQKLLQLEVHLHERVIGQTEAVAAVAAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAQFLFDSEEAMVRIDMSEYMEKHAISRLIGAPPGYVGYEEGGQLSEAVRRRPYSVVLLDEVEKAHRDVFNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSEHILNVSGNDTDYEEMRKRVLQALRKHFRPEFLNRIDDLIIFHTLKKDELRYIVRLQLQRIQKLLSEQKITLELTNLAQDYIVNVGYDPVYGARPLKRAIQRELENPLAMKILDQTFVEGDTVVIDCVNNALTFSKPDEEEVIEAIVPEIVYP
>NC_011729.1|WP_015956799.1|5392555_5393212_-|DUF3386-domain-containing-protein
MTQPTQGRDIFRTAYENRYTWDSHFPGYTADLHLQQGDEVYTGKIRVNSDLTLEVSAIEDEKVKESVYNQLRDIITHRKRSSFEQSHGKNKFTIGSQDPTGAIEILVEGDAMGSNYKVRGKEISQVSRVMGPIAFTINTQESLQTEEGYISTKYNAIFRNPKTDELKGKREFNETYEKFGKYYLPTRQVIEAIEPGGEKIITEFNFQNIKLLEPAVVG
>NC_011729.1|WP_015956798.1|5391822_5392290_-|hypothetical-protein
MKKLISLSLSLLIALSLIAFPFSQQALAAHAYVTIEKVNCGPTPGDKELYLTWKSKDEVPSIPEVNEDVQIWPTDAPLYWQCQNNQVIEPNAKTQFPVDLEMLMSLWDDDKVAGGEDNIDDKISSAVLTPAQNVRGTLEFPGNEGGSIDYLISFE
>NC_011729.1|WP_015956797.1|5391222_5391732_+|hypothetical-protein
MNYLVAVLSNRTQAEQAYSALEKEGLPREQMEILGNGYKSADEYGLINPNTQARKGATRLVYWLIPFGFFAGYAFNWLTGIEIFSTLGAFGNHIIGGLLGAASGALGAYLVGGGVGLTVGSGDALAYRNRLNVGKYLIIIRGTEDLTRRATAILRQFEPENLQGYAQRA
>NC_011729.1|WP_015956796.1|5390431_5390644_+|DUF2949-domain-containing-protein
MNDTIQKPRLLKFLQEELNIPSASINLALNDPQISYGSLPMLLWRYGLINLSQLELIFDWLDDPKHSYNL
>NC_011729.1|WP_015956795.1|5388929_5390273_+|NAD(P)-binding-domain-containing-protein
MIINKTDKHLIIGAGFVGLGIAQALKQAGIPYDQVDASDNIGGNWYHGVYQTAHIISSKKITQFSHYPMPPDYPDFPSAQQMRDYLNSFADHFNLRSSIELNRTVTYVRPVENNHWEVTFKEGEKRHYKGILMCNGHHWSKRFPSFNGEFTGELIHSKDYKHPHQLQDKRVLVIGGGNSACDIAAEAARVAEKSVMSMRESVWFIPKTFAGVPIADLAKGWMPETIQRLITYGIIRLTFGKHSDYGLSQPKYRIFAKHPTLNNEVPYYIKHGRITVKPEVKHLEGKKVTFVDGSEEEIDLIVCATGYHLAYPFLPQELQRVEGAIAKCYGGSFLADYKGLYYIGWGQARGGVGSLIAASAPILVRFLKLQDQINVPVGLVLKEMGQQLPQTHLFDPQQMFRKIKLAHLFFNQITKKAYQVDRQYGKFSNPVLPPLEKSEETQMLMMY
>NC_011729.1|WP_015956794.1|5388118_5388943_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTNLNQAVILLTGATGGFGQEFTRQLLKQNSRLILSDREENKLLEQTQNIQQEITTGEIIACLVADLSSPQGCQSLYNQVKTLNIPIDILINNAGIALYGRTDEVPTQKWEELMQINLLAPMRLTSLIIPDMITRQKGHIVNISSVAGWIALPGMTHYATSKYGLRGFSEGLAAETKAYNIKVSAVYPFFSRTPILQSPRYGTLAQEVQDISSDIATDPAQIIAQTLKGIRENRANIFPDAMGKRIQFLKRYSPDLLHWIVERISNKIKKHDYQ
>NC_011729.1|WP_015956806.1|5401246_5401456_-|hypothetical-protein
MTDTEQQLRSPTDQEDLEATLHHQNIPVEQDNQPQEQNFDNVPTEYTESYGTGVQQYPGDSHVETGHSR
>NC_011729.1|WP_015956807.1|5401893_5403831_+|FAD-dependent-oxidoreductase
MNRSSHSSGFISRRTALKVVGIGTLGGVVGYSRFSKPQPFVFEQDALSLPCDLPHSKSVVVIGAGLAGLACAYQLSQRGFQVTLLERSPNLGGKIASWTIRVDKEKFKMEHGFHGFFPQYYNLNSLITELQIKDNFKSLDFYSLVFRHQEYQPELFRPTNTAFPWNIVDLAIASPNRLRWGINLINPAHWQVFRAITGFQIPKSFNRLDHLSVADWAAQDFPKGLYDLYFLPFAKSSLNAPELLSTGELLQFFHFYFFGNPEGLAFKGTKDDMGTSLVVPMQKAIEQKGGKIISQATVKEIQVSDRQIEYLTYQQGNDVTDSPFWVESNQNIEDQTLDYYGTGDRVFAVKPGAIEALSLTCTHQGCTVMRQENGSFLCPCHGALYDQQGRVIRGPAKGNLSQFEIVQRDNQRIKLKAISDDPFSIKEKIEADYYVIATDVPGVKHLFENMTGAVNPTLKTKIDRLAVADPFAVARFWFDRDFEWEYSYFTSLSGYQLTDSITLYHRIQEQFIDWAKRTGGSVVELHAYCYKETEFPNQEVLLKTFEKELYEIVPALKPARILHRELVNQKNFSGYPPNSYQDRPTTESEISNLIFAGDWVKMPFPCGLMERAVSSGLLAANVILHREGLQRRTLFSVTPEGMLKI
>NC_011729.1|WP_015956808.1|5403852_5405562_+|glycosyl-transferase
MRLRINQSPKVQTRNHYDWVLLLSWTVLGCWLRFLNLTAKPPWTDEFATMVFSLGNHYNSVLLDQVISLEGLLSPLKFNPDTTIFEVVSLLLQEDNHPPLYFILAHWWMKLFPLDGEYMSVLAARSLPALLGGLSIPAVYILGRIAFSSRLVGQLSAMMMAVSPYGVFIAQEARHYTLGILLVIFSLCCLVIAVKQIEKGVIISAGLMLIWITLNCLGLGVHYFFILTLCAQGMSLLFNLPYQLRRTLIWRKNCWRLGLVALFTLTLGMSWVLWIIPQDYGKGMTEWIRPDNWSLLSLISPIFQLLAAWVTMIILLPIESSYFPLVIFSGLLMLFFLVWSIPKLNRGLKICYQNLNYRLGIKLLLGFVLSAIALFFGMTYFLRIDITRGARYSFVYFPAIPVLLGGILSVFWNPYYLNLTRYFRQSQMTVLIIGFIGLLSAMTINFDLGYQKYYLPNQLVKVIEKTSSNQVLIATTHQNLVQTGEMMGIGWELYKNPLPIDIKFLLAHTPLNDSKSAIMTLQANLNQLSRPLDVWLVNFKASVELKNCEADFDNFSEINGYNYQRYHCF
>NC_011729.1|WP_015956809.1|5405801_5406011_+|hypothetical-protein
MTIWVNEQIDPCGILYSCIACSDEQAALECHQTWLNSLTEEQKEEGWIVQIRTVESWDEVPVNALKLNI
>NC_011729.1|WP_015956810.1|5406086_5408141_-|EAL-domain-containing-protein
MFHQLNINAFNFRKTIELQDSFYSIGRHSSNSIIIPSAKISKNHAVFIKKIKDNSEESFYIIDGDGKGKRSTNGIFVNGKKVVEQELKHGDIINFSNEIQATYYIINSPVNSSFSPQYHYLENNYKSLTATDINKKIKEKTIVYPQDFLFKLASLVELSPNPIFEVNFQGKITYLNSLANQKFKDLKKKSLHHPLLKNLLDQGKPKDEKIVIREVKIGDEVFEQHLHYLTENKLIRSYIFDITDRKMAENSLHYQAYYDTLTDLPNRSLFYEKLSTALAKAYLEETLIAVMFIDLDGFKNINDTLGHTLGDELLGSFAQRLRHNLRSSDILARWGGDEFTILIPQIKNEEEIEICAKRVFSILQQPFQVGNHLLYLKASIGVAIYPRDGQDAETIIKNADAALYRTKEMGRNHYQIYHPLITSKTSERLEMENLLHQALEKDQFLLHYQPQINIKNQAICGMEALIRWEHPTLGLVSPAKFIPIAEESGLIISIGEWVLRQACEQNRLWQKKGLPPVRVAVNLSAQQFQQPNFVNIVTKILAETNLEPQFLELEITETTIMKNLEFSCQIVHDLKHMGVHISMDDFGTGYSSLGYLKQIPFNTIKIDQSFIKDLQDKPQDLAIISAVLAIGRGFNVRVIAEGVETQHQVELLRKLECEEMQGFKFSKPLKPEAAANFLSNHFRA
>NC_011729.1|WP_015956811.1|5408485_5409505_+|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein
MPPAVLVEHLSKRYGEVVAVKDISFTVNSGEIFGLLGPNGAGKTTTIRCLCTLAKADGGKIEVGGVSAIDNPKSARRRLGYIAQEVALDKVLTGRELLQLQAALYHLPKSKAKDRIELLLNLLGLESYADKKTGTYSGGLKKRLDIAAGLLHQPQVLVLDEPTVGLDIESRFIMWDFLRQLRDAGTTVLITSHYLEEIDALADRLAIIDQGVVIAEGTPSQLKDQVGGDRVTLRIREFSPSQEVEKAKEILQTLSFVEEVIINTSQGNSLNLVVTPQSNPLSKIEQSLESAGLPIFSISQSRPSLDDVYLAATGRTLMDAELASAGSRDLKSEKKQQMN
>NC_011729.1|WP_015956812.1|5409535_5410432_+|ABC-transporter-permease
MSQSITPTQLEPSLSPDKAIKSQIEPSNNELGNLIQETLALTKRLFIQLQRRPSTLVAGIIQPFMWLVLFGALFYNAPGGLFGEDLNYAKFLAPGIIVFTAFSGALNAGLPVMFDREFGFLNRLLVAPLASRYSIVAASTIYIITLSLIQTAVIVVASAFLGAGWPSLAGLSAITLIVFLIVLGVTALSLGLAFALPGHIELIAVIFVTNLPLLFASTALAPLSFMTKWLQIVASLNPLTYAIEPIRYLYLNSQWGLGSPVLESPWGTISFSGVLLILLAFDGLVLLTIQPLLRRRFA
>NC_011729.1|WP_015956813.1|5410611_5410953_+|hypothetical-protein
MKTIILPLTLGVISLFTGLGASASAQSTNPQNPQNPQNSIGAFQKNEVGSNEDSAFGSPLDLIHNMNMRRGRDSGEFAEDSKTNLNQAADEFKRLQQQRLQNQSSDSNVIPQN
>NC_011729.1|WP_015956814.1|5411155_5411929_+|hydroxyacylglutathione-hydrolase
MKIFRLPALSDNYIFLLHDPQRNIAAVVDPAEPEPVLTCLKKLGAELVTIFNTHHHGDHVGANRALIEHFPNLTVYGGEEDRGRIPGQEVFLKEGDRVQFGDRSGEVFFVPGHTRAHIAYYFPPQGEEETGELFCGDTIFAGGCGRLFEGTPAQMVNSLSKLRALPDNTRIWCAHEYTLNNLKFALTVEPENIDLQNRFSDVKIARSEGEATVPSLLGIEKLTNPFLRWDTQAIKSAMGSQDSVQVFGRLRGKKDNF
>NC_011729.1|WP_162040066.1|5412338_5412596_+|hypothetical-protein
MAQAEGIPPSKLWINRRLVCSYLITFSIANATKNLENGEKALIKFPADVEFMIKKENGQVKVNSEHLAWMLGHDIETFPFSQMIK

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Crispr_ID: NC_011729_46

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011729_46

5467998-5468128

TypeV-U4

N:A

Consensus_repeat	Method
GAACAAAGACCGCCTACGCGGTCTAAATTTCAACCT	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_011729_46

>merge|NC_011729|46|5467998-5468128|CRISPRCasFinder
GAACAAAGACCGCCTACGCGGTCTAAATTTCAACCTTTATCTTGTCATCTCCAAAAATAAAAATGATTATACAAACCTGAAGGGTTGTGCTACAGGAACAAAGACCGCCTACGCGGTCTAAATTTCAACCT

>NC_011729|46|42|5467998-5468128|CRISPRCasFinder
GAACAAAGACCGCCTACGCGGTCTAAATTTCAACCT	TTATCTTGTCATCTCCAAAAATAAAAATGATTATACAAACCTGAAGGGTTGTGCTACAG
GAACAAAGACCGCCTACGCGGTCTAAATTTCAACCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011729.1\|WP_015956855.1\|5455076_5456210_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|215469
NC_011729.1\|WP_049858510.1\|5472012_5472330_+\|hypothetical-protein	unknown	unknown	unknown
NC_011729.1\|WP_015956860.1\|5464148_5465315_-\|clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|133150
NC_011729.1\|WP_015956868.1\|5472534_5473968_+\|phosphoglucomutase/phosphomannomutase-family-protein	unknown	unknown	gnl\|CDD\|100093
NC_011729.1\|WP_015956869.1\|5474136_5475036_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_011729.1\|WP_015955521.1\|5459013_5460195_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_011729.1\|WP_015956857.1\|5460290_5462723_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_011729.1\|WP_015956863.1\|5468270_5468648_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_011729.1\|WP_015956859.1\|5463719_5464133_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308
NC_011729.1\|WP_015956856.1\|5457797_5458373_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_011729.1\|WP_015956862.1\|5466747_5467956_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|237367
NC_011729.1\|WP_015956872.1\|5476692_5479851_-\|DUF4071-domain-containing-protein	unknown	unknown	gnl\|CDD\|276809
NC_011729.1\|WP_041237869.1\|5475597_5476236_-\|DUF1269-domain-containing-protein	unknown	unknown	gnl\|CDD\|377730
NC_011729.1\|WP_015956861.1\|5465318_5466620_-\|peptidase-S13	unknown	unknown	gnl\|CDD\|224938
NC_011729.1\|WP_015956865.1\|5469609_5470386_-\|RNA-polymerase-sigma-factor-SigF	unknown	unknown	gnl\|CDD\|180965
NC_011729.1\|WP_015956870.1\|5475101_5475557_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NC_011729.1\|WP_015956866.1\|5470997_5471825_-\|photosystem-II-manganese-stabilizing-protein-PsbO	unknown	unknown	gnl\|CDD\|366770
NC_011729.1\|WP_015956864.1\|5469034_5469496_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341362
NC_011729.1\|WP_015956854.1\|5453595_5454750_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|215310
NC_011729.1\|WP_157867491.1\|5463036_5463561_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275017

Protein	Function_ID	Function_description	E-value
NC_011729.1\|WP_015956855.1\|5455076_5456210_+\|glycosyltransferase	gnl\|CDD\|215469	PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase.	9.54725e-142
NC_011729.1\|WP_015956860.1\|5464148_5465315_-\|clan-AA-aspartic-protease	gnl\|CDD\|133150	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	1.05204e-19
NC_011729.1\|WP_015956868.1\|5472534_5473968_+\|phosphoglucomutase/phosphomannomutase-family-protein	gnl\|CDD\|100093	cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.	0
NC_011729.1\|WP_015956869.1\|5474136_5475036_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	5.04752e-98
NC_011729.1\|WP_015955521.1\|5459013_5460195_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.61077e-45
NC_011729.1\|WP_015956857.1\|5460290_5462723_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_011729.1\|WP_015956863.1\|5468270_5468648_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.79026e-40
NC_011729.1\|WP_015956859.1\|5463719_5464133_-\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	1.22372e-09
NC_011729.1\|WP_015956856.1\|5457797_5458373_+\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	8.44884e-37
NC_011729.1\|WP_015956862.1\|5466747_5467956_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|237367	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional.	0
NC_011729.1\|WP_015956872.1\|5476692_5479851_-\|DUF4071-domain-containing-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.71403e-08
NC_011729.1\|WP_041237869.1\|5475597_5476236_-\|DUF1269-domain-containing-protein	gnl\|CDD\|377730	pfam06897, DUF1269, Protein of unknown function (DUF1269). This family consists of several bacterial and archaeal proteins of around 200 residues in length. The function of this family is unknown. The family carries a repeated glycine-zipper sequence- motif, GxxxGxxxG, where the x following the G is frequently found to be an alanine. As glycine-zippers occur in membrane proteins, this family is likely to be found spanning a membrane.	0.00231658
NC_011729.1\|WP_015956861.1\|5465318_5466620_-\|peptidase-S13	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	3.34675e-23
NC_011729.1\|WP_015956865.1\|5469609_5470386_-\|RNA-polymerase-sigma-factor-SigF	gnl\|CDD\|180965	PRK07408, PRK07408, RNA polymerase sigma factor SigF; Reviewed.	1.93761e-168
NC_011729.1\|WP_015956870.1\|5475101_5475557_-\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	1.00448e-06
NC_011729.1\|WP_015956866.1\|5470997_5471825_-\|photosystem-II-manganese-stabilizing-protein-PsbO	gnl\|CDD\|366770	pfam01716, MSP, Manganese-stabilizing protein / photosystem II polypeptide. This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilizing protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex.	1.00095e-157
NC_011729.1\|WP_015956864.1\|5469034_5469496_-\|CBS-domain-containing-protein	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	5.03654e-60
NC_011729.1\|WP_015956854.1\|5453595_5454750_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|215310	PLN02572, PLN02572, UDP-sulfoquinovose synthase.	0
NC_011729.1\|WP_157867491.1\|5463036_5463561_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|275017	TIGR04155, hypothetical_protein, PEP-CTERM protein sorting domain, cyanobacterial subclass. This domain model describes a subclass with family TIGR02595 of PEP-CTERM protein sorting signals associated with bacterial exosortases. This subclass is restricted to Cyanobacteria, including the genera Cyanothece, Nostoc, Trichodesmium, Lyngbya, Arthospira, etc. This PEP-CTERM subclass features strongly conserved residues within the transmembrane region, including a Gx4GxG motif. Model TIGR03763 describes a corresponding cyanobacterial form of exosortase found in most species with this domain.	1.68058e-09

>NC_011729.1|WP_015956862.1|5466747_5467956_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MDTKAFKRSLQQSENYHRKGFGQEDEAMGVMNSEYQSSLIQEIRNNNYRLTQGDVTIRLAEAFGFCWGVERAVAMSYETRQHFPNQRIWLTNEVIHNPSVNQRLRDMKVEFIPVIEDQKDFSVVERDDVVILPAFGASVTEMQLLNDKGCTIVDTTCPWVAKVWNSVEKHKKRNYTSIIHGKYKHEETVATSSFAGTYLVVLNMEQAKYVCNYILNGGDKQEFLAKFKKAYSEGFDPDTDLERVGIANQTTMLKSETEEIGKLFEHTMLKKYGPLDLNNHFMSFNTICDATQERQDAMLDLVKEKLDLMVVIGGFNSSNTTHLQEISIHHGIVSYHIDSAARIDLNNHIEHKPLGKDLEVKENWLPDGKIVVGVTSGASTPDIVVEQVLQKIFAIKSAVAMV
>NC_011729.1|WP_015956861.1|5465318_5466620_-|peptidase-S13
MLKLPLCLIPLIFISSCSVSNSSVVPPKPQLTPQLTQPSSLNLALTLAPIQSGTLPTQAQIEEFVKKLTDDGYNPTTQGIWIQSGNTLLANYRGTIPLPAASIAKVATTLVALERFNPDHQFTTDFGMTGTIKDGVLYGDLIVKGGDDPFFVWENAIAVGNLLNEMGIKRVTGDLIIVNSFYMNFKLSPLESGTLLKVGLNSQNWTKEAQTQYKTLPPVTPRPQVIIEGSVKTIATTPSNLKPLLSHHSLPLAELLKKMNLYSNTWMTKMINQALGGDSIVAQKAAQLAQVPTTEIQLGGSDRISPRAAVGMFLAIEQYLQQYNMTVADVFAIIGQDEGILEKRPLPAYAVLKSGIWENISALAGALPTQHQDTIWFAIMNVGQPWEQSEVEQEQLLSELVNKWGKVVTAPSQLKPLSSRVNYKSSLIKHEQN
>NC_011729.1|WP_015956860.1|5464148_5465315_-|clan-AA-aspartic-protease
MKVFKKPLIQYIISPIVGGLTLFLPSVTLGESSTPPPLSIQEQKIAEDLINCISDSFTSEQSGSQQTLETTSLKCFYQIIYLDQNGEIRPDAEDRLKTLVKLTGVALPTPIREGKATIQLEKLPNTDIFTLPVTIEGNTQKFILDLGASNSIITRELAQQLKLQSIIIPSEILEYMVVGQSCANIEAAMHPFPKVAINAATAQGLMGLGLSNFVFSEAISGVVGLDFFSGFDLLINPQSLQLEILPSSAIKSKAIPLKGKMGLMTTEVYINGKGPFTFLLDTGAEKMVISEKLAQTLNMTKLEQQEVRGFCGNEPAYSTQVNQVRLQDHTLNDLEGVIVNTEVLEVLGIDGIVGQNFLNQYQQHWQFSSPNELGFPETGGLTLNPLMK
>NC_011729.1|WP_015956859.1|5463719_5464133_-|EamA-family-transporter
MSKEWILPTLGALIFWGFWGFIPKITTQYIEPKSAIVYEVIGAMIVGMIVLFSLQFQPDTHPKGIVLAITTGMLGLLGAFCFLNAVSKGAVVLVSTLSALYPVVTICLATFILGETISIQQGVGIALAVLAIILITA
>NC_011729.1|WP_157867491.1|5463036_5463561_-|PEP-CTERM-sorting-domain-containing-protein
MMMTGWQKISMITSGLALSLTVSPINSVQAAIIPYTFSGTIEFGDLTGESFSGSFNYDDSLLTGSGYEVVDVSDLELTFLGNTFTAVNGDSTPRVEFSEGNFLGLYYSVSSFNPEFSLLPGFSDVSDAKFAYIGSNDAGFGTVQYTVVPEPFTLLGTGTALGLGLLFKRKLKQK
>NC_011729.1|WP_015956857.1|5460290_5462723_+|phosphoenolpyruvate--protein-phosphotransferase
MVGIVIVCHSKALAQAIVELSQQMVQTPVPIAIAAGIDDPEHPFGTDPIAIQQAIESIYTDEGVIVLMDLGSALLSAEMALEFLPADQREKVKLTSAPLVEGAIAAIVQASTGANCDQILSEATTALNSKISQLSPINSEIEEKSVTSSSYSESQTIDLTVKNSLGIHARPAAQFVAIANQFEAQITLENLTTQSQPVNGKSINQVITLGVRQNHHIRIFAQGEDATLALNALQELIEGDFGETTPDSPDTKINPQKNQTSNADLIGIPASEGMAVGSVISYRLSLPQVDRQQGENPQREWQQLQRAIATAKHQINEIIQSAPNSDIFQAHLLYLQDPTLLHQVHHRIFNLGESAAWGWKTVIEETINTYQTLNDPYLQGRGMDVLDVGGRVLRILTGGISSINLTQTGIIIAQDLTPSEVAHFNPKQVLGICTVGGSPTAHSALIANMLGIPMIVNVGIQLLELPPETEIAIDGKTGEIWLNNPDKKQFFLIPQPSPIGDQKAITEDGHSISVVANILGVGDAQLAIDFGAQGVGNLRTELLYLERLTPPTEEEQFNIYRAIADILNPYPLTIRTVDIGGDKPVPYLNLEGEKNPFLGWRGIRQSLECEDLFKTQLRAILRASEGNNIRLMFPMVASVGEIRAAKAMLTEVKQELQEKGIGFNPKIPVGVMIEIPAAVIMADKIAPEVDFLSLGTNDLSQYIMAADRTNAKVAKLADGFEPAVLRMVAQTVKIGHKEGIKVSVCGQIASNSQAVPILIGLGVDELSVNPPSIGKVKEVISGLKLEEVQKLADQVLNLESAQEVKDFING
>NC_011729.1|WP_015955521.1|5459013_5460195_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLLGFKTELKLNNQQRSLLAQHAGVARHAWNWGLALTKQILDHNKANSNDKIKFPTAIDLHKWLVALVKPQHDWYYQVSKCAPQWALKALADAWKRCFKKTAKPPKFKKKGKHDSFTLDGSLKCDHQKIKVPVIGWLKTYERLPHGYQPKSVTISQKVNRWFISFKIEIEPASTPKSVDVVGCDLGVKSLATLSSGLVFEGAKSYRKFEKKLSRLQYLARHKVKGSNNWKKAQKQIAKLHFKIANIRKDTLHKLTTYLAKNHSKIVIEDLNVSGMLANGKLAKSVADMGFYEFRRQLDYKTQLYGSELIIADRWFASSKTCSNCGHKKESLSLSERVFECEQCSFVCDRDLNASLILASLAVSSTVSACGLVSADTARMKQENNIESTLSRIE
>NC_011729.1|WP_015956856.1|5457797_5458373_+|Uma2-family-endonuclease
MIQTSAQTETLSLEFPRALSLNVTPEQFEALAAANRYLKLERTAQGELIVNPPTGGESGKRNLSISTQLGNWVEGNEDLGEGFDSSTGFRLPNWAYRSPDASWISRQRWESLTQEQRKGFVPLCPEVVLELRSPSDSLSKLQEKMKEYIDNGSLLGWLIDPLNTRVEIYRSGREVEVINNPRELSGAMNRS
>NC_011729.1|WP_015956855.1|5455076_5456210_+|glycosyltransferase
MRIALFTETFLPKIDGIVTRLRHTVEHLQRNGDQVLVICPDGGLTEYKGAKIYGVSSIPFPLYPELKLAIPRPTLKGVLEKFKPDLIHVVNPAVLGVGGIYYSKVLGIPLVASYHTHLPQYLQHYGLGSLEGLLWELLKLAHNQAKLNLCTSTAMVEELINHGIERVDLWQRGVDTELFQPHLTSLSMRSRLSAGNPDSPLLLYVGRVSAEKQIDQIKPVLEAIPQAHLAIVGDGPHREALEEHFKGTNTHFIGYLQGLELASAYASADAFIFPSRTETLGLVLLEAMAAGCPVVAAASGGIPDIVTDGVNGYLFDPADADGAITATQRLLEATQEREKLRHNARLEAERWGWAAATRQLQNYYQTVVYPQSFPKAA
>NC_011729.1|WP_015956854.1|5453595_5454750_+|NAD-dependent-epimerase/dehydratase-family-protein
MKVLVIGGDGYCGWATALHLSNRGYEVGIVDNLIRRHWDAKLGVETLTPITPIHQRIDRWHDLSGKSIDLFVGDITNYDFLIKALRQFEPEAIVHFGEQRSAPYSMIDREHAVMTQVNNVVGTLNILYAMKEDFPDCHLVKLGTMGEYGTPNIDIEEGYITIEHNGRKDTLPYPKQPGSFYHLSKVHDSHNIHFACKIWGLRATDLNQGVVYGVLTEETGMDELLINRLDYDGVFGTALNRFCIQAAIGHPLTVYGKGGQTRGFLDIRDTVRCVELAIANPADAGQFRVFNQFTELFSVQDLAVKVKSAAIAMGLNVEINHLDNPRVELEQHYFNAKNTKLLDLGLQPHYLSDSLLDSLLNFAIKYKERVDQKQILPKVSWRRN
>NC_011729.1|WP_015956863.1|5468270_5468648_+|DUF29-domain-containing-protein
MANLYDTDYLIWTEKQAELLRDRKFEQLDLENLIEEVEDLGKSELRTCRSGAILIIIHLLYLRYWEAELERNQFQWQAEIDNWRVQLESRLTGSFRNRLEEEWEELYQSAVKKFEKKTGLNIPKS
>NC_011729.1|WP_015956864.1|5469034_5469496_-|CBS-domain-containing-protein
MTKTVKDVMTPNPYTVTPQTPLQEAIKLMAEKHISGLPVVNDQGLLVGVISETDLMWQETGVETPPYIMILDSVIYLQNPARYDKEIHKALGQTVGEVMSDKPITVKPDQPLREAAQLMHDKKIRRLPVIESAQGKVIGIITSGDIIRAMASS
>NC_011729.1|WP_015956865.1|5469609_5470386_-|RNA-polymerase-sigma-factor-SigF
MYTPVKENLKVETLRLFQDYQKTSTPELRNQILELNFGLVRREAHHWTTQCNENYEDLLQVGCLGLIRAIERFELGKGHAFSSFAIPYIRGEIQHYLRDKGYSVRIPRRWLDLGRQAMIIRREFQTQFNRQPTDTEIAYGLEVSLKEWQEIKLAFQNREPLSLDVSINHDEEGQTSLADLVPDPKYRSFQLSQDDQIRLQQALSQLEERTRRVLEFVFLQDLTQREAAEQLGISVVTVSRRVKKGLDFLKETMKKEIF
>NC_011729.1|WP_015956866.1|5470997_5471825_-|photosystem-II-manganese-stabilizing-protein-PsbO
MRFRSLLIAFVALCLAVLTVACSDAPTDVSREQLTYDEILNTGLANKCPQVSEFTRGNIPVERGQSYLVTDLCLEPQQYFVKEEPVNKRQEAEYVPGKLLTRATTSLEQISGTIKVSDDGKLTFIEEEGIDFQPITVQLPGGEQVPFFFTIKSLVGQTEPGFNSINSSVDFEGNFKVPSYRGASFLDPKGRGVVTGYDNAVALPASADAQDFANVKSTDMGKGTMSLQITKVDGSTGEIAGVFESEQPSDTDLGAKEPVDVKIRGIFYARIEPSV
>NC_011729.1|WP_049858510.1|5472012_5472330_+|hypothetical-protein
MNQDPRWDIQGSENQLQEITTQIRALAQHYQGDVDALLQLLRTLEHLHREIREQFFEPSLPNTRKDLYHLLRDIEETGGWPYIERMKLQSFFKVLTEDSDLPSPD
>NC_011729.1|WP_015956868.1|5472534_5473968_+|phosphoglucomutase/phosphomannomutase-family-protein
MAFTINPIKFGTDGWRGIIAADFTFERVCHLAPLAAQVLADNYGSNLDSRLIIVGYDRRFMAEDFASLAAEAIVKAGFDVLLSDGYAPTPAFSWAAKAQNALGAIVMTASHNPANYLGLKVKGFFGGSVSPEITQQIEARLSQPPAQASARGHLSLFDPWASYCSRLRSQVNITPIRDAIASGRLQVFADVMHGAAAGGLERLLECPITELHSNRDPLFGGQPPEPLPRYLSDLLATVKAAPGDGLKVGLVFDGDSDRIAAVDGKGNFLSSQILIPILIDHLVEKKGLSGEVIKTVSGSDLIPRLAKAYHLPLFETPIGYKYIADRMLTSQVLIGGEESGGIGYGTHIPERDALLSALYVLEAVVESGVDLSERYTQLQEKVGFTSAYDRIDLPLASMEVRTKLLTRLETDLPQKIAGQSVVDCLTLDGYKFRLEDNSWLLIRFSGTEPILRLYCEASNLDRVHDTLNWAKEWANSI
>NC_011729.1|WP_015956869.1|5474136_5475036_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTEETLSGEELAQWRNWAKQKAIASRISPTEVDWLLQEVANLTPLDLRLNLFQERSQISLKYSLSQLTELWQQRLNERLPVQYLVGVTPWRKFRLKVSHDVLIPRPETEYIIDIVQKAILDTPLDLSGGNWVDLGTGSGAIALGLADLLTNATIYAVDTSLAALEIAEENAIELGLKQRIIFKQGSWWDPLEFLKGQINGMVSNPPYIPTEIIPTLQPEVAYHEPTLALDGGEDGLMSIDYLVEISPFYLRSGGIWLIEMMAGQGKKVVQLLENQGSYQNIQIFPDLAGIDRFVLAYLK
>NC_011729.1|WP_015956870.1|5475101_5475557_-|BON-domain-containing-protein
MNKFTLLLISSLFMVGAAGCNNARTSMDAPTYRGGVVENPQNVQETKEDAESNIRQAQLNADIRAREQRNNWSSNPLVRTNADLQSEVRAKLEANIPRAKLGVEAQEGIVTIYGVVPDEREYRTIEPLTREIRGVEAVNVDVEVVPPLEYQ
>NC_011729.1|WP_041237869.1|5475597_5476236_-|DUF1269-domain-containing-protein
MNSPSYISNPLKLALGIFSSSSMAKQAIDELNNKGFTPDQIFLLTQDSNIPDQVKGTRITQKTVGHKGKEGATTGAVTGGLIGTFTGILVGLGAAAIPGVGPILLASAEATALVTTLAGTLIGTAAGAIVGVLAGLGIPKKQAKIYDEHLQKGNYLVVVQGTPEQVSYAETLMLSKGIQEWGVYDMPTSVDARRAITESEPMVVVVNRQQVI
>NC_011729.1|WP_015956872.1|5476692_5479851_-|DUF4071-domain-containing-protein
MNTEPSTVLKTAWQRYAQLKTNAAIASKQYLSLRLWVMASALLTIGLAILVCINDWSLVASPLTEALEGSLIIIPIATLVIWSFTNRLRQGQYWQVFNTSAAAIINAIYLYRTLLIGQSDRHLWLQDRITLIYDQVMEQIGGNLVLKPYQDSLPPSDAPEIEQGDSGWNDLSVEDYISYRLDAQLNWHDRAVKKLDITRNNLRLAIVFCLGLSPLFPILGGKYLLWIALTTTSAIILMSLLEVNRIDDYIHQYNQLVWQLRAIRDTWQTLEKQKCTTEHIVRLILSTETLLGNVATSMTHSQSHSLITISEKNTPDLLTQVVNTLPLTLVSLCALPQASDRQNLLTSAGEVINSAGKDILKKEPEIELVKKEILHAFIVMPFGRKQGKDGRWIDFDTIYYTLIKPAVEAAGFESFRADEETVTGDILTDMLQELLLADLVIADLSIDNANVFYEIGIRHALRKRGVVHIQCGRAYLPYDIFNVRTLAYHCNENGQPDLDYLEKDKQALTNMIQKTWESEPTRIHSPLFNLLTGLPEPNRKLLQTPLATGYWQEYTEWQKRVTIAQQKKQIGDVLLLTEEVKNPFIKCEVIAESGQVLKRLNNHALALKEYRQGLKIDPKNPIFRLEEAYHLSRLNQYDEAIVKLEWLLQDDPKNMDALSYLGRIYKDVWREEWEHITDEQERLKQAYESAYLLERSIETYLQAYQLNQNHYYSGINAVTLLFILDYLAQQYSQENEPDYKILREQLPSLCGAIEFCLNSHAKITPTDFWVFLSLGDLAVCNASSPKEVTRKYKKALTLLWNNKFALQSTLTQLKLLETLNFRLDYVQAGITLLKAEYERIEKQEKTVSLQTETDPLQVFLFSGHMIDNPERTKPRFPADMETEVQSKIKAVLKELNANENDLCITAGIACGGDIIFIEICLQLNMTVEIYLPFPLEEFIQQSVSFAGDDWVERVYKIKNHPNVTFHFQPERLGALPKGDNPFSRNNRWAFYSTLMYGIDKVRLIVLWDGKGGDGPGGTQDMVNQVRQFGGIVEHLDTTKFDYWDKVKLFHRE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_011729_2	2.1\|84090\|34\|NC_011729\|PILER-CR	84090-84123	34	NC_011729.1	84438-84471	2	0.941
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	684983-685010	1	0.964
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	838313-838340	1	0.964
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	1815150-1815177	1	0.964
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	1815218-1815245	1	0.964
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	1815317-1815344	1	0.964
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	3455265-3455292	1	0.964
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	4794436-4794463	1	0.964
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	272193-272220	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	293464-293491	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	749756-749783	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	882983-883010	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	1602306-1602333	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	1602398-1602425	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	1706020-1706047	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	2557278-2557305	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	3339504-3339531	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	3339547-3339574	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	3339590-3339617	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	4441596-4441623	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	4995902-4995929	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	5002289-5002316	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	5671570-5671597	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	5718840-5718867	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	5844653-5844680	2	0.929
NC_011729_5	5.1\|684836\|28\|NC_011729\|CRISPRCasFinder	684836-684863	28	NC_011729.1	5872533-5872560	2	0.929
NC_011729_11	11.77\|1900255\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1900255-1900287	33	NC_011729.1	150129-150161	0	1.0
NC_011729_33	33.1\|3838476\|39\|NC_011729\|CRISPRCasFinder	3838476-3838514	39	NC_011729.1	42603-42641	2	0.949
NC_011729_33	33.1\|3838476\|39\|NC_011729\|CRISPRCasFinder	3838476-3838514	39	NC_011729.1	1233914-1233952	2	0.949
NC_011729_33	33.1\|3838476\|39\|NC_011729\|CRISPRCasFinder	3838476-3838514	39	NC_011729.1	1512391-1512429	2	0.949
NC_011729_42	42.2\|5095817\|36\|NC_011729\|CRISPRCasFinder,CRT	5095817-5095852	36	NC_011729.1	153399-153434	2	0.944
NC_011729_42	42.9\|5095819\|36\|NC_011729\|PILER-CR	5095819-5095854	36	NC_011729.1	153399-153434	2	0.944

1. spacer 2.1|84090|34|NC_011729|PILER-CR matches to position: 84438-84471, mismatch: 2, identity: 0.941

cgggttcatcgtgccaatgttcggctaaagcaga	CRISPR spacer
cgggttcatcgcgccaatgtttggctaaagcaga	Protospacer
***********.*********.************

2. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 684983-685010, mismatch: 1, identity: 0.964

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcctaacgcatca	Protospacer
********************** *****

3. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 838313-838340, mismatch: 1, identity: 0.964

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcctaacgcatca	Protospacer
********************** *****

4. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 1815150-1815177, mismatch: 1, identity: 0.964

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcctaacgcatca	Protospacer
********************** *****

5. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 1815218-1815245, mismatch: 1, identity: 0.964

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcctaacgcatca	Protospacer
********************** *****

6. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 1815317-1815344, mismatch: 1, identity: 0.964

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcctaacgcatca	Protospacer
********************** *****

7. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 3455265-3455292, mismatch: 1, identity: 0.964

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacccatca	Protospacer
******************.*********

8. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 4794436-4794463, mismatch: 1, identity: 0.964

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcctaacgcatca	Protospacer
********************** *****

9. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 272193-272220, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

10. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 293464-293491, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aaatgtaggatgcgttcctaacgcatca	Protospacer
** ******************* *****

11. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 749756-749783, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aatagtaggatgcgttcctaacgcatca	Protospacer
*** ****************** *****

12. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 882983-883010, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

13. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 1602306-1602333, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aatggtaggatgcgttcctaacgcatca	Protospacer
*** ****************** *****

14. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 1602398-1602425, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aatggtaggatgcgttcctaacgcatca	Protospacer
*** ****************** *****

15. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 1706020-1706047, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

16. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 2557278-2557305, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

17. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 3339504-3339531, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

18. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 3339547-3339574, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

19. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 3339590-3339617, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

20. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 4441596-4441623, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

21. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 4995902-4995929, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

22. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 5002289-5002316, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

23. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 5671570-5671597, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

24. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 5718840-5718867, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

25. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 5844653-5844680, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

26. spacer 5.1|684836|28|NC_011729|CRISPRCasFinder matches to position: 5872533-5872560, mismatch: 2, identity: 0.929

aattgtaggatgcgttcctaacccatca	CRISPR spacer
aattgtaggatgcgttcccaacgcatca	Protospacer
******************.*** *****

27. spacer 11.77|1900255|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to position: 150129-150161, mismatch: 0, identity: 1.0

ttgataatttagacaaagttgggctattcttga	CRISPR spacer
ttgataatttagacaaagttgggctattcttga	Protospacer
*********************************

28. spacer 33.1|3838476|39|NC_011729|CRISPRCasFinder matches to position: 42603-42641, mismatch: 2, identity: 0.949

tagtcattagtcgtagagacgttggatgcaacgtctgta	CRISPR spacer
tagtcattagtcctagagacgttgtatgcaacgtctgta	Protospacer
************ *********** **************

29. spacer 33.1|3838476|39|NC_011729|CRISPRCasFinder matches to position: 1233914-1233952, mismatch: 2, identity: 0.949

tagtcattagtcgtagagacgttggatgcaacgtctgta	CRISPR spacer
tagtcattagtcgtagagacgttgcaggcaacgtctgta	Protospacer
************************ * ************

30. spacer 33.1|3838476|39|NC_011729|CRISPRCasFinder matches to position: 1512391-1512429, mismatch: 2, identity: 0.949

tagtcattagtcgtagagacgttggatgcaacgtctgta	CRISPR spacer
tagtcattagtcgtagagacgttgcatacaacgtctgta	Protospacer
************************ **.***********

31. spacer 42.2|5095817|36|NC_011729|CRISPRCasFinder,CRT matches to position: 153399-153434, mismatch: 2, identity: 0.944

caagtatttttatttggtttctttttcatttctgct	CRISPR spacer
caagtatttttatttggtttcttttttatctctgct	Protospacer
**************************.**.******

32. spacer 42.9|5095819|36|NC_011729|PILER-CR matches to position: 153399-153434, mismatch: 2, identity: 0.944

caagtatttttatttggtttctttttcatttctgct	CRISPR spacer
caagtatttttatttggtttcttttttatctctgct	Protospacer
**************************.**.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011729_19	19.30\|2727978\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727978-2728009	32	NZ_CP034151	Pantoea agglomerans strain L15 plasmid pPagL15_3, complete sequence	6549-6580	5	0.844
NC_011729_22	22.1\|2963455\|25\|NC_011729\|CRISPRCasFinder	2963455-2963479	25	NC_019734	Crinalium epipsammum PCC 9333 plasmid pCRI9333.02, complete sequence	48369-48393	5	0.8
NC_011729_11	11.11\|1895448\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1895448-1895481	34	NZ_AP018564	Staphylococcus argenteus strain 58113 plasmid p2, complete sequence	39498-39531	6	0.824
NC_011729_19	19.5\|2726449\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726449-2726480	32	NC_017484	Lactococcus lactis subsp. lactis CV56 plasmid pCV56C, complete sequence	30243-30274	6	0.812
NC_011729_36	36.1\|4108745\|31\|NC_011729\|CRISPRCasFinder	4108745-4108775	31	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	362506-362536	6	0.806
NC_011729_36	36.1\|4108745\|31\|NC_011729\|CRISPRCasFinder	4108745-4108775	31	NZ_CP024788	Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence	7750-7780	6	0.806
NC_011729_36	36.1\|4108745\|31\|NC_011729\|CRISPRCasFinder	4108745-4108775	31	NZ_CP024788	Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence	7798-7828	6	0.806
NC_011729_36	36.1\|4108745\|31\|NC_011729\|CRISPRCasFinder	4108745-4108775	31	NZ_CP024790	Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence	61755-61785	6	0.806
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	NZ_CP028887	Borrelia turcica IST7 plasmid lp32-B, complete sequence	32099-32132	7	0.794
NC_011729_19	19.1\|2726204\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726204-2726235	32	MK257744	Thermus phage YS40_Isch, complete genome	126099-126130	7	0.781
NC_011729_19	19.2\|2726265\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726265-2726296	32	NZ_CP042508	Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence	5859-5890	7	0.781
NC_011729_19	19.2\|2726265\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726265-2726296	32	NZ_CP040893	Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence	63406-63437	7	0.781
NC_011729_19	19.10\|2726755\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726755-2726786	32	NZ_CP034087	Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence	263978-264009	7	0.781
NC_011729_19	19.28\|2727856\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727856-2727887	32	MK448998	Streptococcus phage Javan636, complete genome	30684-30715	7	0.781
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP026242	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence	172860-172892	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP009883	Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence	9612-9644	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP026196	Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence	144344-144376	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	339781-339813	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	54184-54216	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP026391	Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence	10593-10625	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP011635	Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence	13603-13635	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP013115	Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence	176564-176596	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	96738-96770	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP026171	Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence	65534-65566	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	CP009869	Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence	47683-47715	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	132686-132718	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	61373-61405	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP029142	Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence	252546-252578	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	43781-43813	7	0.788
NC_011729_35	35.16\|4020889\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020889-4020921	33	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	380284-380316	7	0.788
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	301140-301173	8	0.765
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	75-108	8	0.765
NC_011729_11	11.113\|1902876\|36\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1902876-1902911	36	MN692952	Marine virus AFVG_117M91, complete genome	17768-17803	8	0.778
NC_011729_19	19.19\|2727306\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727306-2727337	32	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	379544-379575	8	0.75
NC_011729_19	19.19\|2727306\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727306-2727337	32	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	296418-296449	8	0.75
NC_011729_19	19.19\|2727306\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727306-2727337	32	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	881856-881887	8	0.75
NC_011729_19	19.19\|2727306\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727306-2727337	32	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	881871-881902	8	0.75
NC_011729_19	19.19\|2727306\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727306-2727337	32	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	331448-331479	8	0.75
NC_011729_19	19.19\|2727306\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727306-2727337	32	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	20485-20516	8	0.75
NC_011729_19	19.25\|2727673\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727673-2727704	32	AP013401	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S37-C49	18697-18728	8	0.75
NC_011729_19	19.25\|2727673\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727673-2727704	32	CP016197	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-3, complete sequence	57302-57333	8	0.75
NC_011729_19	19.25\|2727673\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727673-2727704	32	CP016198	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-4, complete sequence	3369-3400	8	0.75
NC_011729_19	19.27\|2727795\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727795-2727826	32	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	22465-22496	8	0.75
NC_011729_19	19.35\|2728283\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728283-2728314	32	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	24155-24186	8	0.75
NC_011729_19	19.36\|2728344\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728344-2728375	32	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	205846-205877	8	0.75
NC_011729_19	19.36\|2728344\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728344-2728375	32	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	100093-100124	8	0.75
NC_011729_19	19.47\|2729019\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2729019-2729050	32	MN693136	Marine virus AFVG_25M110, complete genome	9295-9326	8	0.75
NC_011729_19	19.47\|2729019\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2729019-2729050	32	MH248947	Streptomyces phage Yosif, complete genome	21780-21811	8	0.75
NC_011729_19	19.54\|2729446\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2729446-2729477	32	NZ_CP035189	Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence	33174-33205	8	0.75
NC_011729_19	19.54\|2729446\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2729446-2729477	32	NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	169945-169976	8	0.75
NC_011729_26	26.1\|3575161\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	3575161-3575193	33	MN694292	Marine virus AFVG_250M289, complete genome	13292-13324	8	0.758
NC_011729_42	42.7\|5096180\|35\|NC_011729\|CRISPRCasFinder,CRT	5096180-5096214	35	JN638751	Bacillus phage G, complete genome	363353-363387	8	0.771
NC_011729_42	42.14\|5096182\|35\|NC_011729\|PILER-CR	5096182-5096216	35	JN638751	Bacillus phage G, complete genome	363353-363387	8	0.771
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	NZ_CP041156	Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence	78413-78449	9	0.757
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	NZ_HG970001	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence	21441-21477	9	0.757
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	NZ_CP030208	Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence	21212-21248	9	0.757
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	MH479913	Gordonia phage Fryberger, complete genome	30934-30970	9	0.757
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	433393-433426	9	0.735
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	AP013631	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28-MedDCM-OCT-S36-C195, * SEQUENCING IN PROGRESS *	4075-4108	9	0.735
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	MN693384	Marine virus AFVG_25M512, complete genome	1826-1859	9	0.735
NC_011729_14	14.6\|2393631\|32\|NC_011729\|CRISPRCasFinder	2393631-2393662	32	MN694176	Marine virus AFVG_250M775, complete genome	23073-23104	9	0.719
NC_011729_14	14.6\|2393631\|32\|NC_011729\|CRISPRCasFinder	2393631-2393662	32	MN694778	Marine virus AFVG_250M433, complete genome	22963-22994	9	0.719
NC_011729_14	14.6\|2393631\|32\|NC_011729\|CRISPRCasFinder	2393631-2393662	32	MN694559	Marine virus AFVG_250M432, complete genome	22828-22859	9	0.719
NC_011729_14	14.6\|2393631\|32\|NC_011729\|CRISPRCasFinder	2393631-2393662	32	MN694683	Marine virus AFVG_250M776, complete genome	23085-23116	9	0.719
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	MT720689	Vibrio phage XM1, complete genome	33358-33389	9	0.719
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	799724-799755	9	0.719
NC_011729_19	19.28\|2727856\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727856-2727887	32	NZ_CP031066	Bacillus sp. SH8-8 plasmid pl193, complete sequence	37300-37331	9	0.719
NC_011729_19	19.28\|2727856\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727856-2727887	32	NZ_CP031063	Bacillus sp. AR4-2 plasmid pl192, complete sequence	37300-37331	9	0.719
NC_011729_19	19.29\|2727917\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727917-2727948	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	45913-45944	9	0.719
NC_011729_19	19.38\|2728466\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728466-2728497	32	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	657478-657509	9	0.719
NC_011729_19	19.38\|2728466\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728466-2728497	32	NC_010181	Bacillus mycoides KBAB4 plasmid pBWB402, complete sequence	64657-64688	9	0.719
NC_011729_19	19.38\|2728466\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728466-2728497	32	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	10745-10776	9	0.719
NC_011729_19	19.38\|2728466\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728466-2728497	32	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	252054-252085	9	0.719
NC_011729_19	19.38\|2728466\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728466-2728497	32	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	233115-233146	9	0.719
NC_011729_19	19.39\|2728527\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728527-2728558	32	NZ_CP019438	Thioclava nitratireducens strain 25B10_4 plasmid unnamed1, complete sequence	130527-130558	9	0.719
NC_011729_19	19.54\|2729446\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2729446-2729477	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	746005-746036	9	0.719
NC_011729_19	19.54\|2729446\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2729446-2729477	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	162623-162654	9	0.719
NC_011729_20	20.1\|2841801\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2841801-2841833	33	JX181824	Salmonella phage SSE-121, complete genome	61714-61746	9	0.727
NC_011729_20	20.1\|2841801\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2841801-2841833	33	GU070616	Salmonella phage PVP-SE1, complete genome	5028-5060	9	0.727
NC_011729_20	20.15\|2842814\|35\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2842814-2842848	35	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	139637-139671	9	0.743
NC_011729_42	42.1\|5095747\|33\|NC_011729\|CRISPRCasFinder,CRT	5095747-5095779	33	NZ_CP017255	Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence	45092-45124	9	0.727
NC_011729_42	42.1\|5095747\|33\|NC_011729\|CRISPRCasFinder,CRT	5095747-5095779	33	KC171647	Lactobacillus phage PL-1, complete genome	7279-7311	9	0.727
NC_011729_42	42.1\|5095747\|33\|NC_011729\|CRISPRCasFinder,CRT	5095747-5095779	33	NC_022756	Lactobacillus phage J-1, complete genome	7279-7311	9	0.727
NC_011729_42	42.1\|5095747\|33\|NC_011729\|CRISPRCasFinder,CRT	5095747-5095779	33	MH983004	Lactobacillus phage BH1, complete genome	7279-7311	9	0.727
NC_011729_42	42.4\|5095963\|34\|NC_011729\|CRISPRCasFinder,CRT	5095963-5095996	34	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	120416-120449	9	0.735
NC_011729_42	42.4\|5095963\|34\|NC_011729\|CRISPRCasFinder,CRT	5095963-5095996	34	NZ_CP032328	Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence	100361-100394	9	0.735
NC_011729_42	42.7\|5096180\|35\|NC_011729\|CRISPRCasFinder,CRT	5096180-5096214	35	NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	62177-62211	9	0.743
NC_011729_42	42.7\|5096180\|35\|NC_011729\|CRISPRCasFinder,CRT	5096180-5096214	35	NZ_CP020881	Bacillus horikoshii strain 20a plasmid unnamed1, complete sequence	9848-9882	9	0.743
NC_011729_42	42.8\|5095749\|33\|NC_011729\|PILER-CR	5095749-5095781	33	NZ_CP017255	Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence	45092-45124	9	0.727
NC_011729_42	42.8\|5095749\|33\|NC_011729\|PILER-CR	5095749-5095781	33	KC171647	Lactobacillus phage PL-1, complete genome	7279-7311	9	0.727
NC_011729_42	42.8\|5095749\|33\|NC_011729\|PILER-CR	5095749-5095781	33	NC_022756	Lactobacillus phage J-1, complete genome	7279-7311	9	0.727
NC_011729_42	42.8\|5095749\|33\|NC_011729\|PILER-CR	5095749-5095781	33	MH983004	Lactobacillus phage BH1, complete genome	7279-7311	9	0.727
NC_011729_42	42.11\|5095965\|34\|NC_011729\|PILER-CR	5095965-5095998	34	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	120416-120449	9	0.735
NC_011729_42	42.11\|5095965\|34\|NC_011729\|PILER-CR	5095965-5095998	34	NZ_CP032328	Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence	100361-100394	9	0.735
NC_011729_42	42.14\|5096182\|35\|NC_011729\|PILER-CR	5096182-5096216	35	NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	62177-62211	9	0.743
NC_011729_42	42.14\|5096182\|35\|NC_011729\|PILER-CR	5096182-5096216	35	NZ_CP020881	Bacillus horikoshii strain 20a plasmid unnamed1, complete sequence	9848-9882	9	0.743
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	KM597530	Mycobacterium phage Bipolar, complete genome	43301-43337	10	0.73
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	MN855803	Bacteriophage sp. isolate 108, partial genome	12040-12076	10	0.73
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	MN693624	Marine virus AFVG_250M402, complete genome	28069-28105	10	0.73
NC_011729_7	7.12\|884916\|36\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	884916-884951	36	KY612839	Vibrio phage pVco-5, complete genome	37932-37967	10	0.722
NC_011729_11	11.11\|1895448\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1895448-1895481	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	710011-710044	10	0.706
NC_011729_11	11.11\|1895448\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1895448-1895481	34	NZ_AP019800	Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence	232673-232706	10	0.706
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	KU892558	Lactococcus phage PLgT-1, complete genome	1396-1429	10	0.706
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	44342-44375	10	0.706
NC_011729_11	11.23\|1896326\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1896326-1896359	34	KF926093	Lactococcus phage phiL47, complete genome	15331-15364	10	0.706
NC_011729_11	11.40\|1897555\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1897555-1897588	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2473431-2473464	10	0.706
NC_011729_11	11.112\|1902805\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1902805-1902838	34	MT446411	UNVERIFIED: Escherichia virus TH40, complete genome	126583-126616	10	0.706
NC_011729_14	14.4\|2393491\|33\|NC_011729\|CRISPRCasFinder	2393491-2393523	33	NZ_CP015043	Rhodovulum sp. P5 plasmid pRGUI04, complete sequence	4007-4039	10	0.697
NC_011729_14	14.4\|2393491\|33\|NC_011729\|CRISPRCasFinder	2393491-2393523	33	NZ_CP015043	Rhodovulum sp. P5 plasmid pRGUI04, complete sequence	63332-63364	10	0.697
NC_011729_19	19.10\|2726755\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726755-2726786	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1827229-1827260	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP022047	Staphylococcus sciuri strain FDAARGOS_285 plasmid unnamed1, complete sequence	33758-33789	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	CP016947	Yersinia enterocolitica strain YE1 plasmid unnamed2, complete sequence	35369-35400	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP016938	Yersinia enterocolitica strain YE6 plasmid unnamed1, complete sequence	99701-99732	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP016934	Yersinia enterocolitica strain YE7 plasmid unnamed1, complete sequence	46975-47006	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP016942	Yersinia enterocolitica strain YE3 plasmid unnamed1, complete sequence	72203-72234	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP016941	Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence	59913-59944	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP016932	Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence	53436-53467	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NC_010377	Yersinia enterocolitica plasmid pYE854, complete sequence	61143-61174	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP025801	Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence	21300-21331	10	0.688
NC_011729_19	19.11\|2726816\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726816-2726847	32	NZ_CP011119	Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence	36559-36590	10	0.688
NC_011729_19	19.18\|2727245\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727245-2727276	32	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	379747-379778	10	0.688
NC_011729_19	19.18\|2727245\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727245-2727276	32	MN694275	Marine virus AFVG_250M227, complete genome	36457-36488	10	0.688
NC_011729_19	19.21\|2727428\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727428-2727460	33	NC_011738	Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence	14678-14710	10	0.697
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	660533-660564	10	0.688
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	243843-243874	10	0.688
NC_011729_19	19.28\|2727856\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727856-2727887	32	NZ_CP054604	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence	232039-232070	10	0.688
NC_011729_19	19.33\|2728161\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728161-2728192	32	NZ_CP031836	Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence	94104-94135	10	0.688
NC_011729_19	19.33\|2728161\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728161-2728192	32	NZ_CP020458	Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence	96000-96031	10	0.688
NC_011729_20	20.1\|2841801\|33\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2841801-2841833	33	MK504445	Lactobacillus phage ATCCB, complete genome	31159-31191	10	0.697
NC_011729_26	26.5\|3575456\|35\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	3575456-3575490	35	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	1009930-1009964	10	0.714
NC_011729_26	26.5\|3575456\|35\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	3575456-3575490	35	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	566528-566562	10	0.714
NC_011729_35	35.12\|4020606\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	4020606-4020639	34	NZ_CP034228	Lactobacillus agilis strain La3 plasmid pLa3_3, complete sequence	2585-2618	10	0.706
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	NC_048047	Caulobacter phage CcrBL9, complete genome	114130-114166	11	0.703
NC_011729_11	11.78\|1900325\|35\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1900325-1900359	35	NC_009760	Bacillus phage 0305phi8-36, complete genome	164352-164386	11	0.686
NC_011729_11	11.95\|1901569\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1901569-1901602	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1970281-1970314	11	0.676
NC_011729_11	11.112\|1902805\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	1902805-1902838	34	NZ_CP045419	Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence	515685-515718	11	0.676
NC_011729_19	19.10\|2726755\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2726755-2726786	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1558094-1558125	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	928039-928070	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	658067-658098	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	671784-671815	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	684845-684876	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	653992-654023	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	671180-671211	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	674575-674606	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	668414-668445	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	671784-671815	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	671180-671211	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	653992-654023	11	0.656
NC_011729_19	19.22\|2727490\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2727490-2727521	32	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	650253-650284	11	0.656
NC_011729_19	19.42\|2728710\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728710-2728741	32	MG945471	UNVERIFIED: Microviridae sp. isolate 399-1602, complete genome	1392-1423	11	0.656
NC_011729_19	19.45\|2728894\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728894-2728927	34	MK814760	Gordonia phage Forza, complete genome	12228-12261	11	0.676
NC_011729_19	19.45\|2728894\|34\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2728894-2728927	34	MK894436	Gordonia phage Boopy, complete genome	12312-12345	11	0.676
NC_011729_19	19.55\|2729507\|32\|NC_011729\|PILER-CR,CRISPRCasFinder,CRT	2729507-2729538	32	GU943039	Uncultured phage MedDCM-OCT-S09-C23 genomic sequence	4026-4057	11	0.656
NC_011729_33	33.1\|3838476\|39\|NC_011729\|CRISPRCasFinder	3838476-3838514	39	AP017993	Planktothrix agardhii NIES-204 plasmid plasmid2 DNA, complete sequence	93446-93484	11	0.718
NC_011729_6	6.3\|873667\|37\|NC_011729\|CRISPRCasFinder,CRT,PILER-CR	873667-873703	37	NZ_LR723674	Rhizobium flavum strain YW14 plasmid 5	81440-81476	13	0.649

1. spacer 19.30|2727978|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034151 (Pantoea agglomerans strain L15 plasmid pPagL15_3, complete sequence) position: , mismatch: 5, identity: 0.844

ttgcccaaatgcgtttaaattaattcctcata-	CRISPR spacer
ctgcccagatgcgtttaaattcatt-ctgatat	Protospacer
.******.************* *** ** ***

2. spacer 22.1|2963455|25|NC_011729|CRISPRCasFinder matches to NC_019734 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.02, complete sequence) position: , mismatch: 5, identity: 0.8

gagcgaaaaagtttcgggttgctcg	CRISPR spacer
tttggaaaaagttttgggttgctcg	Protospacer
    **********.**********

3. spacer 11.11|1895448|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018564 (Staphylococcus argenteus strain 58113 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.824

gttttattttttcttgttgga-ttttttaataatt	CRISPR spacer
ggtttatattatcttgttggatttttttaatagc-	Protospacer
* ***** ** ********** **********..

4. spacer 19.5|2726449|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_017484 (Lactococcus lactis subsp. lactis CV56 plasmid pCV56C, complete sequence) position: , mismatch: 6, identity: 0.812

gaaacaagtacaatggtacaaaaagaaacaga	CRISPR spacer
gtatatagtacaatggaacaaaaagaatcaga	Protospacer
* *   ********** ********** ****

5. spacer 36.1|4108745|31|NC_011729|CRISPRCasFinder matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 6, identity: 0.806

ttagtgaacagtggacagttaacagtagtcg	CRISPR spacer
tcagtgaacagtgaacagtaaacagttatca	Protospacer
*.***********.***** ****** .**.

6. spacer 36.1|4108745|31|NC_011729|CRISPRCasFinder matches to NZ_CP024788 (Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence) position: , mismatch: 6, identity: 0.806

ttagtgaacagtggacagttaacagtagtcg	CRISPR spacer
tcagtgaacagtgaacagttaccagttatca	Protospacer
*.***********.******* **** .**.

7. spacer 36.1|4108745|31|NC_011729|CRISPRCasFinder matches to NZ_CP024788 (Nostoc flagelliforme CCNUN1 plasmid pNFSY03, complete sequence) position: , mismatch: 6, identity: 0.806

ttagtgaacagtggacagttaacagtagtcg	CRISPR spacer
tcagtgaacagtgaacagttatcagtgatct	Protospacer
*.***********.******* ****..**

8. spacer 36.1|4108745|31|NC_011729|CRISPRCasFinder matches to NZ_CP024790 (Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence) position: , mismatch: 6, identity: 0.806

ttagtgaacagtggacagttaacagtagtcg	CRISPR spacer
tcagtgaacagtgaacagttatcagttatca	Protospacer
*.***********.******* **** .**.

9. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028887 (Borrelia turcica IST7 plasmid lp32-B, complete sequence) position: , mismatch: 7, identity: 0.794

aacaaaataacaaagaataataaaaaatatctag-	CRISPR spacer
ataaaaataacaataaataataaaaaa-atatgga	Protospacer
*  ********** .************ ** *.*

10. spacer 19.1|2726204|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MK257744 (Thermus phage YS40_Isch, complete genome) position: , mismatch: 7, identity: 0.781

---tcagttagaaggatttttcctttgtgtacaag	CRISPR spacer
acttcatat---aggatttttcctttatttacaag	Protospacer
   ***  *   **************.* ******

11. spacer 19.2|2726265|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 7, identity: 0.781

attttttgaattttggataggcgtaccgttag	CRISPR spacer
ggtttttgatttttgggtaggcgtactctttg	Protospacer
. ******* ******.*********. ** *

12. spacer 19.2|2726265|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 7, identity: 0.781

attttttgaattttggataggcgtaccgttag	CRISPR spacer
ggtttttgatttttgggtaggcgtactctttg	Protospacer
. ******* ******.*********. ** *

13. spacer 19.10|2726755|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034087 (Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence) position: , mismatch: 7, identity: 0.781

gcggcc--tatggcgggaagctgcgcctcgagtc	CRISPR spacer
--cgccgatatggcgcgaaactgcgcctcgagcg	Protospacer
   ***  ******* ***.************.

14. spacer 19.28|2727856|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MK448998 (Streptococcus phage Javan636, complete genome) position: , mismatch: 7, identity: 0.781

aagaaactctacagatacaacaagccaaaaca	CRISPR spacer
taatatcactactgatacatcaagccaaaaca	Protospacer
 *. * * **** ****** ************

15. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

16. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

17. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

18. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

19. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

20. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

21. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

22. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013115 (Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

23. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

24. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

25. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

26. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

27. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

28. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

29. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

30. spacer 35.16|4020889|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 7, identity: 0.788

--ataacgtcagcctcttgagcgccatttcgcaaa	CRISPR spacer
caggagcgt--gcctcatgagcgccattccgcaaa	Protospacer
  . *.***  ***** ***********.******

31. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 8, identity: 0.765

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
tacctcatcacaaagaataataaaaaatatgctg	Protospacer
 **   ** ********************* . *

32. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 8, identity: 0.765

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
acaaaaatgacaaagaataataaataaaaatgag	Protospacer
*  *****.*************** ** * . **

33. spacer 11.113|1902876|36|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MN692952 (Marine virus AFVG_117M91, complete genome) position: , mismatch: 8, identity: 0.778

tttaaatttgctaattcttctccttgcagaataata	CRISPR spacer
ggtatctctgctaattcttctccttgctgaataact	Protospacer
  **  *.******************* ******.

34. spacer 19.19|2727306|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.75

ttaactatttttttgatttgaggagaaaaaaa	CRISPR spacer
taattgaattttttgattttaggataaaaaat	Protospacer
* * . * *********** **** ******

35. spacer 19.19|2727306|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.75

ttaactatttttttgatttgaggagaaaaaaa	CRISPR spacer
taattgaattttttgattttaggataaaaaat	Protospacer
* * . * *********** **** ******

36. spacer 19.19|2727306|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.75

ttaactatttttttgatttgaggagaaaaaaa	CRISPR spacer
taattgaattttttgattttaggataaaaaat	Protospacer
* * . * *********** **** ******

37. spacer 19.19|2727306|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.75

ttaactatttttttgatttgaggagaaaaaaa	CRISPR spacer
taattgaattttttgattttaggataaaaaat	Protospacer
* * . * *********** **** ******

38. spacer 19.19|2727306|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.75

ttaactatttttttgatttgaggagaaaaaaa	CRISPR spacer
taattgaattttttgattttaggataaaaaat	Protospacer
* * . * *********** **** ******

39. spacer 19.19|2727306|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 8, identity: 0.75

--ttaactatttttttgatttgaggagaaaaaaa	CRISPR spacer
acttga--gattttttggtttgaggagaaataag	Protospacer
  **.*  . *******.************ **.

40. spacer 19.25|2727673|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to AP013401 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S37-C49) position: , mismatch: 8, identity: 0.75

taaagaggatatgaaaaaacgcaacttagaat	CRISPR spacer
aaacttatatatgaaaaaacgcaaattagaaa	Protospacer
 **   . **************** ******

41. spacer 19.25|2727673|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to CP016197 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-3, complete sequence) position: , mismatch: 8, identity: 0.75

taaagaggatatgaaaaaacgcaacttagaat---	CRISPR spacer
aaaagtggatatgaaaaaaagcaa---aagatttc	Protospacer
 **** ************* ****   *..**

42. spacer 19.25|2727673|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to CP016198 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-4, complete sequence) position: , mismatch: 8, identity: 0.75

taaagaggatatgaaaaaacgcaacttagaat---	CRISPR spacer
aaaagtggatatgaaaaaaagcaa---aagatttc	Protospacer
 **** ************* ****   *..**

43. spacer 19.27|2727795|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 8, identity: 0.75

aacaagaatcgatattagagaatttacaatac	CRISPR spacer
tccaagaatctatattagataatttatatttt	Protospacer
  ******** ******** ******.* * .

44. spacer 19.35|2728283|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 8, identity: 0.75

gagacaatcaccaatgccctcgct-----aggatttt	CRISPR spacer
gagacaatcgccaaggccctcgccacccaagg-----	Protospacer
*********.**** ********.     ***

45. spacer 19.36|2728344|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aaggatataattttcaactctacacctataac	CRISPR spacer
ttataattaattttcaactcttcacctattac	Protospacer
  . *  ************** ******* **

46. spacer 19.36|2728344|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aaggatataattttcaactctacacctataac	CRISPR spacer
ttataattaattttcaactcttcacctattac	Protospacer
  . *  ************** ******* **

47. spacer 19.47|2729019|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MN693136 (Marine virus AFVG_25M110, complete genome) position: , mismatch: 8, identity: 0.75

caatggaacggcagcgagtgggtagaggttgc	CRISPR spacer
gtatggaacggaagtgagtgggtagatatagt	Protospacer
  ********* **.*********** .* *.

48. spacer 19.47|2729019|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MH248947 (Streptomyces phage Yosif, complete genome) position: , mismatch: 8, identity: 0.75

caatggaacggcagcgagtgggtagaggttgc	CRISPR spacer
ttctggaacggcagcgcgtgggtcgacctcgc	Protospacer
.  ************* ****** **  *.**

49. spacer 19.54|2729446|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035189 (Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atcgaaaatgcgatcgcaatcaaggaaaaatg	CRISPR spacer
tatgcaattgcgatcgccatcaaggaaaaaaa	Protospacer
  .* ** ********* ************ .

50. spacer 19.54|2729446|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_014502 (Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence) position: , mismatch: 8, identity: 0.75

atcgaaaatgcgatcgcaatcaaggaaaaatg	CRISPR spacer
tatgaaaaagcgatcgcactcaaggaaacctt	Protospacer
  .***** ********* *********  *

51. spacer 26.1|3575161|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MN694292 (Marine virus AFVG_250M289, complete genome) position: , mismatch: 8, identity: 0.758

---aaaactggggactagatttaaatagagatggag	CRISPR spacer
atccaaat---ggaatagatttaaatggagatggaa	Protospacer
    ***.   *** ***********.********.

52. spacer 42.7|5096180|35|NC_011729|CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.771

aaaaacaagcagaggaatatttaaaagaaattaag	CRISPR spacer
cacaattagaagaggaatacttaaaagaaattgat	Protospacer
 * **. ** *********.************.*

53. spacer 42.14|5096182|35|NC_011729|PILER-CR matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.771

aaaaacaagcagaggaatatttaaaagaaattaag	CRISPR spacer
cacaattagaagaggaatacttaaaagaaattgat	Protospacer
 * **. ** *********.************.*

54. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.757

gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
gctggaggtggcggtggcgctgacgctgaagcccagg	Protospacer
*  **************** ***** ***  .** *.

55. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG970001 (Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence) position: , mismatch: 9, identity: 0.757

gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
ggaggcggtggcggtggcggtggcggtggcatcatat	Protospacer
*.*** ****************.*****.. ** *.

56. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030208 (Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence) position: , mismatch: 9, identity: 0.757

gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
ggaggcggtggcggtggcggtggcggtggcatcatat	Protospacer
*.*** ****************.*****.. ** *.

57. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to MH479913 (Gordonia phage Fryberger, complete genome) position: , mismatch: 9, identity: 0.757

gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
gcaggcggtggcggtggcggtggcggtggatcacgaa	Protospacer
* *** ****************.*****. *. * .*

58. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
acaacaataaaaaataataataaaaaataataat	Protospacer
*  * ***** *** ************** . *

59. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to AP013631 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28-MedDCM-OCT-S36-C195, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
aaacaaataacaatcaataataaaaaatggcagc	Protospacer
**  *********  *************. * .

60. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MN693384 (Marine virus AFVG_25M512, complete genome) position: , mismatch: 9, identity: 0.735

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
aaacaaataacaatcaataataaaaaatggaaac	Protospacer
**  *********  *************.   *

61. spacer 14.6|2393631|32|NC_011729|CRISPRCasFinder matches to MN694176 (Marine virus AFVG_250M775, complete genome) position: , mismatch: 9, identity: 0.719

tagaagggactcaaataagtttaaagtttgag	CRISPR spacer
atgcaataactcaaatcagtttcaagtttgat	Protospacer
  * *. .******** ***** ********

62. spacer 14.6|2393631|32|NC_011729|CRISPRCasFinder matches to MN694778 (Marine virus AFVG_250M433, complete genome) position: , mismatch: 9, identity: 0.719

tagaagggactcaaataagtttaaagtttgag	CRISPR spacer
atgcaataactcaaatcagtttcaagtttgat	Protospacer
  * *. .******** ***** ********

63. spacer 14.6|2393631|32|NC_011729|CRISPRCasFinder matches to MN694559 (Marine virus AFVG_250M432, complete genome) position: , mismatch: 9, identity: 0.719

tagaagggactcaaataagtttaaagtttgag	CRISPR spacer
atgcaataactcaaatcagtttcaagtttgat	Protospacer
  * *. .******** ***** ********

64. spacer 14.6|2393631|32|NC_011729|CRISPRCasFinder matches to MN694683 (Marine virus AFVG_250M776, complete genome) position: , mismatch: 9, identity: 0.719

tagaagggactcaaataagtttaaagtttgag	CRISPR spacer
atgcaataactcaaatcagtttcaagtttgat	Protospacer
  * *. .******** ***** ********

65. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MT720689 (Vibrio phage XM1, complete genome) position: , mismatch: 9, identity: 0.719

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
agaaaaaaggaaaaatcacgcaaagttcacag	Protospacer
* ********* ******** *****  ..

66. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 9, identity: 0.719

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
ccgataaaggacaaagcaggaaaagtaatcgg	Protospacer
 *.* ********** ** ********* .

67. spacer 19.28|2727856|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 9, identity: 0.719

aagaaactctacagatacaacaagccaaaaca	CRISPR spacer
tacgtactctacagaaacaacaatccaacagg	Protospacer
 * . ********** ******* **** * .

68. spacer 19.28|2727856|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 9, identity: 0.719

aagaaactctacagatacaacaagccaaaaca	CRISPR spacer
tacgtactctacagaaacaacaatccaacagg	Protospacer
 * . ********** ******* **** * .

69. spacer 19.29|2727917|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 9, identity: 0.719

gatacgacgttatctttatcaatttcccatac	CRISPR spacer
tgctttacgttttctttatcaattccccattc	Protospacer
 .. . ***** ************.***** *

70. spacer 19.38|2728466|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.719

acttgatgatttttgctcaatacctgtcttta	CRISPR spacer
tacaattaatatttgctcaatacctgacttta	Protospacer
  . . *.** *************** *****

71. spacer 19.38|2728466|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_010181 (Bacillus mycoides KBAB4 plasmid pBWB402, complete sequence) position: , mismatch: 9, identity: 0.719

acttgatgatttttgctcaatacctgtcttta	CRISPR spacer
tacaattaatatttgctcaatacctgacttta	Protospacer
  . . *.** *************** *****

72. spacer 19.38|2728466|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acttgatgatttttgctcaatacctgtcttta	CRISPR spacer
tacaattaatatttgctcaatacctgacttta	Protospacer
  . . *.** *************** *****

73. spacer 19.38|2728466|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 9, identity: 0.719

acttgatgatttttgctcaatacctgtcttta	CRISPR spacer
tacaattaatatttgctcaatacctgacttta	Protospacer
  . . *.** *************** *****

74. spacer 19.38|2728466|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acttgatgatttttgctcaatacctgtcttta	CRISPR spacer
tacaattaatatttgctcaatacctgacttta	Protospacer
  . . *.** *************** *****

75. spacer 19.39|2728527|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019438 (Thioclava nitratireducens strain 25B10_4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aggaaatgaaacttgctgaagagctttttaaa	CRISPR spacer
agccctacaaacgtgcagaagagctttttaag	Protospacer
**      **** *** **************.

76. spacer 19.54|2729446|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

atcgaaaatgcgatcgcaatcaaggaaaaatg	CRISPR spacer
ccagaaaatgcaatggcaatcaaggaacagac	Protospacer
 . ********.** ************ *.

77. spacer 19.54|2729446|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 9, identity: 0.719

atcgaaaatgcgatcgcaatcaaggaaaaatg	CRISPR spacer
ccagaaaatgcaatggcaatcaaggaacagac	Protospacer
 . ********.** ************ *.

78. spacer 20.1|2841801|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to JX181824 (Salmonella phage SSE-121, complete genome) position: , mismatch: 9, identity: 0.727

gagaagaatatttttctgaactgaagaaaacca	CRISPR spacer
aagttgaagatttttctgatctgaagaaagttt	Protospacer
.**  *** ********** *********...

79. spacer 20.1|2841801|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to GU070616 (Salmonella phage PVP-SE1, complete genome) position: , mismatch: 9, identity: 0.727

gagaagaatatttttctgaactgaagaaaacca	CRISPR spacer
aagttgaagatttttctgatctgaagaaagttt	Protospacer
.**  *** ********** *********...

80. spacer 20.15|2842814|35|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 9, identity: 0.743

aactttatttgataaagatttaaacaataacaaca	CRISPR spacer
gatggtatttgataaatatttaaccaataaagaga	Protospacer
.*.  *********** ****** ****** .* *

81. spacer 42.1|5095747|33|NC_011729|CRISPRCasFinder,CRT matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tataaatttataatattaaaaaggactactaat	Protospacer
*.    ******* * **************.*.

82. spacer 42.1|5095747|33|NC_011729|CRISPRCasFinder,CRT matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tcctcctttaggaaaataaaaaggactagccaa	Protospacer
*  .****** .**************** . *

83. spacer 42.1|5095747|33|NC_011729|CRISPRCasFinder,CRT matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tcctcctttaggaaaataaaaaggactagccaa	Protospacer
*  .****** .**************** . *

84. spacer 42.1|5095747|33|NC_011729|CRISPRCasFinder,CRT matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tcctcctttaggaaaataaaaaggactagccaa	Protospacer
*  .****** .**************** . *

85. spacer 42.4|5095963|34|NC_011729|CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.735

tcccgatgaccatccggccatttcaggaaagcct	CRISPR spacer
tgttgatgaccatccagccatttccggaggggtt	Protospacer
* ..***********.******** ***..* .*

86. spacer 42.4|5095963|34|NC_011729|CRISPRCasFinder,CRT matches to NZ_CP032328 (Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence) position: , mismatch: 9, identity: 0.735

tcccgatgaccatccggccatttcaggaaagcct	CRISPR spacer
tgtcgatgaccatccagccatttccggcggggtt	Protospacer
* .************.******** ** ..* .*

87. spacer 42.7|5096180|35|NC_011729|CRISPRCasFinder,CRT matches to NC_014502 (Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence) position: , mismatch: 9, identity: 0.743

aaaaacaagc-------agaggaatatttaaaagaaattaag	CRISPR spacer
-------atcctattttagaggaatatttaaaagaaagtaag	Protospacer
       * *       ******************** ****

88. spacer 42.7|5096180|35|NC_011729|CRISPRCasFinder,CRT matches to NZ_CP020881 (Bacillus horikoshii strain 20a plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aaaaacaagcagaggaatatttaaaagaaattaag	CRISPR spacer
aagatgctttagagcagtatttaaaagaaattaag	Protospacer
**.*     .**** *.******************

89. spacer 42.8|5095749|33|NC_011729|PILER-CR matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tataaatttataatattaaaaaggactactaat	Protospacer
*.    ******* * **************.*.

90. spacer 42.8|5095749|33|NC_011729|PILER-CR matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tcctcctttaggaaaataaaaaggactagccaa	Protospacer
*  .****** .**************** . *

91. spacer 42.8|5095749|33|NC_011729|PILER-CR matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tcctcctttaggaaaataaaaaggactagccaa	Protospacer
*  .****** .**************** . *

92. spacer 42.8|5095749|33|NC_011729|PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 9, identity: 0.727

tgaccctttataaaaataaaaaggactactgac	CRISPR spacer
tcctcctttaggaaaataaaaaggactagccaa	Protospacer
*  .****** .**************** . *

93. spacer 42.11|5095965|34|NC_011729|PILER-CR matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.735

tcccgatgaccatccggccatttcaggaaagcct	CRISPR spacer
tgttgatgaccatccagccatttccggaggggtt	Protospacer
* ..***********.******** ***..* .*

94. spacer 42.11|5095965|34|NC_011729|PILER-CR matches to NZ_CP032328 (Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence) position: , mismatch: 9, identity: 0.735

tcccgatgaccatccggccatttcaggaaagcct	CRISPR spacer
tgtcgatgaccatccagccatttccggcggggtt	Protospacer
* .************.******** ** ..* .*

95. spacer 42.14|5096182|35|NC_011729|PILER-CR matches to NC_014502 (Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence) position: , mismatch: 9, identity: 0.743

aaaaacaagc-------agaggaatatttaaaagaaattaag	CRISPR spacer
-------atcctattttagaggaatatttaaaagaaagtaag	Protospacer
       * *       ******************** ****

96. spacer 42.14|5096182|35|NC_011729|PILER-CR matches to NZ_CP020881 (Bacillus horikoshii strain 20a plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aaaaacaagcagaggaatatttaaaagaaattaag	CRISPR spacer
aagatgctttagagcagtatttaaaagaaattaag	Protospacer
**.*     .**** *.******************

97. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to KM597530 (Mycobacterium phage Bipolar, complete genome) position: , mismatch: 10, identity: 0.73

gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
ggaggcggtggcggtggcggtggcggtggtgtttccg	Protospacer
*.*** ****************.*****.* *... .

98. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 10, identity: 0.73

gaaggaggtggcggtggcggtgacggtgatttcctga-----	CRISPR spacer
gccggaggcggcggtggcggtggcggtga-----agagagtg	Protospacer
*  *****.*************.******      **

99. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to MN693624 (Marine virus AFVG_250M402, complete genome) position: , mismatch: 10, identity: 0.73

gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
gcaggaggtggcggaggcggtggcggtggtagcagcg	Protospacer
* ************ *******.*****.*  *   .

100. spacer 7.12|884916|36|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to KY612839 (Vibrio phage pVco-5, complete genome) position: , mismatch: 10, identity: 0.722

cttgtttgtattttatttactttaagtttgtcttca	CRISPR spacer
agcttaagccttctaattactttaagtttgtcttca	Protospacer
  . *  *. **.** ********************

101. spacer 11.11|1895448|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 10, identity: 0.706

gttttattttttcttgttggattttttaataatt	CRISPR spacer
ggcttaatttttattgttggattttttgggcgat	Protospacer
* .*** ***** **************..  . *

102. spacer 11.11|1895448|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019800 (Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence) position: , mismatch: 10, identity: 0.706

gttttattttttcttgttggattttttaataatt	CRISPR spacer
tttttatgttttcttgtttgattttatggcgggt	Protospacer
 ****** ********** ****** *..... *

103. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to KU892558 (Lactococcus phage PLgT-1, complete genome) position: , mismatch: 10, identity: 0.706

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
tataaaataaataagaataataaaaaatgatata	Protospacer
 *.*******  ****************. .  .

104. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
ccgttaataaccaaaaataataaaaaatatgcaa	Protospacer
     ****** **.*************** .*.

105. spacer 11.23|1896326|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 10, identity: 0.706

aacaaaataacaaagaataataaaaaatatctag	CRISPR spacer
ttagaaataaaaaataataataaaaaatagcact	Protospacer
   .****** *** ************** *

106. spacer 11.40|1897555|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

cgatgtaacttctctccaattaataaactttaat--	CRISPR spacer
aatggtaacttctccgcaattaataaac--aagttg	Protospacer
 .  **********. ************   *.*

107. spacer 11.112|1902805|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MT446411 (UNVERIFIED: Escherichia virus TH40, complete genome) position: , mismatch: 10, identity: 0.706

ttaatattgatgtatatgtgttatttgcaaaggt	CRISPR spacer
tgtgctcaaatgtatatgcgttagttgcaaaggt	Protospacer
*  .. . .*********.**** **********

108. spacer 14.4|2393491|33|NC_011729|CRISPRCasFinder matches to NZ_CP015043 (Rhodovulum sp. P5 plasmid pRGUI04, complete sequence) position: , mismatch: 10, identity: 0.697

caccgctttagtggcgctcaacgcctacaagaa	CRISPR spacer
gctgaccttcgtggcgctcaacgccgacaagct	Protospacer
  . .*.** *************** *****

109. spacer 14.4|2393491|33|NC_011729|CRISPRCasFinder matches to NZ_CP015043 (Rhodovulum sp. P5 plasmid pRGUI04, complete sequence) position: , mismatch: 10, identity: 0.697

caccgctttagtggcgctcaacgcctacaagaa	CRISPR spacer
gctgaccttcgtggcgctcaacgccgacaagct	Protospacer
  . .*.** *************** *****

110. spacer 19.10|2726755|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 10, identity: 0.688

gcggcctatggcgggaagctgcgcctcgagtc	CRISPR spacer
ttgaagcccggcgagaagctgcgcttcgagtc	Protospacer
 .*.  . .****.**********.*******

111. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022047 (Staphylococcus sciuri strain FDAARGOS_285 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
tgttaaaaggacaaatcaaaaaaagtaatgat	Protospacer
    ************** .********   .

112. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to CP016947 (Yersinia enterocolitica strain YE1 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

113. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016938 (Yersinia enterocolitica strain YE6 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

114. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016934 (Yersinia enterocolitica strain YE7 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

115. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016942 (Yersinia enterocolitica strain YE3 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

116. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016941 (Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

117. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016932 (Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

118. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_010377 (Yersinia enterocolitica plasmid pYE854, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

119. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025801 (Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaactcatcaat	Protospacer
*********** ******.****  .*    .

120. spacer 19.11|2726816|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011119 (Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence) position: , mismatch: 10, identity: 0.688

acaaaaaaggacaaatcacgaaaagtaagtcc	CRISPR spacer
acaaaaaaggaaaaatcatgaaattcatcaat	Protospacer
*********** ******.****  .*    .

121. spacer 19.18|2727245|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 10, identity: 0.688

aatgacgatttgccgatgtctcaagccgagaa	CRISPR spacer
cccagtactttgccgatgtctcaagacgaaaa	Protospacer
  ..... ***************** ***.**

122. spacer 19.18|2727245|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MN694275 (Marine virus AFVG_250M227, complete genome) position: , mismatch: 10, identity: 0.688

aatgacgatttgccgatgtctcaagccgagaa	CRISPR spacer
ggcgtggataggccgatgtctcaagccgaatt	Protospacer
...*  ***  ******************.

123. spacer 19.21|2727428|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 10, identity: 0.697

agatcgaaagcacgatcgctcaactgcaacttc	CRISPR spacer
ttactgaaaaaacgatcgctcaactgcaagcgg	Protospacer
  *..****. ****************** .

124. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 10, identity: 0.688

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gcagagcatgaagataagcttgagatcgtcaa	Protospacer
 .*.*** *** ***************    .

125. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 10, identity: 0.688

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gcagagcatgaagataagcttgagatcgtcaa	Protospacer
 .*.*** *** ***************    .

126. spacer 19.28|2727856|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054604 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.688

aagaaactctacagatacaacaagccaaaaca	CRISPR spacer
cctcacctctacagttacaacaagcgaaacag	Protospacer
    * ******** ********** ***  .

127. spacer 19.33|2728161|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

caatttaatttcgctatcacctcaattacaag	CRISPR spacer
tggattattttcgctatcaactcaattttatc	Protospacer
... *** *********** ******* .*

128. spacer 19.33|2728161|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 10, identity: 0.688

caatttaatttcgctatcacctcaattacaag	CRISPR spacer
tggattattttcgctatcaactcaattttatc	Protospacer
... *** *********** ******* .*

129. spacer 20.1|2841801|33|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MK504445 (Lactobacillus phage ATCCB, complete genome) position: , mismatch: 10, identity: 0.697

gagaagaatatttttctgaactgaagaaaacca	CRISPR spacer
attaataatatttttctcaactgaagaagttac	Protospacer
.  ** *********** **********. .

130. spacer 26.5|3575456|35|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 10, identity: 0.714

ggctacatcctcagcaaccgctacgcctgcgcccc	CRISPR spacer
cacggcatcctcagcaagcgctgcgcctgccgtcg	Protospacer
 .* .************ ****.*******  .*

131. spacer 26.5|3575456|35|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 10, identity: 0.714

ggctacatcctcagcaaccgctacgcctgcgcccc	CRISPR spacer
cacggcatcctcagcaagcgctgcgcctgccgtcg	Protospacer
 .* .************ ****.*******  .*

132. spacer 35.12|4020606|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034228 (Lactobacillus agilis strain La3 plasmid pLa3_3, complete sequence) position: , mismatch: 10, identity: 0.706

ctgaagcgtacaagaaagttttgcctttcaattc	CRISPR spacer
ttacagcgcacaaaaaagttttgcctttttccac	Protospacer
.*. ****.****.**************.  . *

133. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 11, identity: 0.703

gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
gtcggcggtggcgggggcggtgacggtgaggcggtcg	Protospacer
*  ** ******** **************  .  * .

134. spacer 11.78|1900325|35|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_009760 (Bacillus phage 0305phi8-36, complete genome) position: , mismatch: 11, identity: 0.686

tagactggcctcagtttttctctgatttgtggaac	CRISPR spacer
ataagtgtcctcactttttctctgatttgttttgt	Protospacer
  .* ** ***** ****************   ..

135. spacer 11.95|1901569|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.676

tattacgttcctgaacaggaatgagccaaaaact	CRISPR spacer
cagtacgttcatgaacaggaaggagcctgtccac	Protospacer
.* ******* ********** ***** .    .

136. spacer 11.112|1902805|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 11, identity: 0.676

ttaatattgatgtatatgtgttatttgcaaaggt	CRISPR spacer
gttgtattgatgtgtatgagttatttgctcgcaa	Protospacer
 * .*********.**** *********  . .

137. spacer 19.10|2726755|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

gcggcctatggcgggaagctgcgcctcgagtc	CRISPR spacer
ttcctctatggcggcgagctgcgcctcgtcca	Protospacer
 .  .********* .************  .

138. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

139. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

140. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

141. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

142. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

143. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

144. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

145. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

146. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

147. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

148. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

149. spacer 19.22|2727490|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 11, identity: 0.656

ttaaagcttgatgataagcttgagatccagtg	CRISPR spacer
gccgagcatgaagataagcttgagatcgtcaa	Protospacer
 . .*** *** ***************    .

150. spacer 19.42|2728710|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MG945471 (UNVERIFIED: Microviridae sp. isolate 399-1602, complete genome) position: , mismatch: 11, identity: 0.656

gtggatttggttagggaaaataaaaggggtct	CRISPR spacer
aacgatttggttagggacaaaaaaagaataaa	Protospacer
.  ************** ** *****..

151. spacer 19.45|2728894|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MK814760 (Gordonia phage Forza, complete genome) position: , mismatch: 11, identity: 0.676

aagtaaacctaaagagggcgagaaaaaacaagag	CRISPR spacer
cgaaatgttcaaagagggcgagaaaaagcacgag	Protospacer
 .. * ....*****************.** ***

152. spacer 19.45|2728894|34|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to MK894436 (Gordonia phage Boopy, complete genome) position: , mismatch: 11, identity: 0.676

aagtaaacctaaagagggcgagaaaaaacaagag	CRISPR spacer
cgaaatgttcaaagagggcgagaaaaagcacgag	Protospacer
 .. * ....*****************.** ***

153. spacer 19.55|2729507|32|NC_011729|PILER-CR,CRISPRCasFinder,CRT matches to GU943039 (Uncultured phage MedDCM-OCT-S09-C23 genomic sequence) position: , mismatch: 11, identity: 0.656

caatagatcgggttttcctattttttttatcc	CRISPR spacer
tcatagatcgggattttctatttttcgagctg	Protospacer
. ********** ***.********.  ...

154. spacer 33.1|3838476|39|NC_011729|CRISPRCasFinder matches to AP017993 (Planktothrix agardhii NIES-204 plasmid plasmid2 DNA, complete sequence) position: , mismatch: 11, identity: 0.718

tagtcattagtcgtagagacgttggatgcaacgtctgta	CRISPR spacer
acaccccaaaacgtagagacgttgcatgcaacgtctcta	Protospacer
  ..* . *. ************* *********** **

155. spacer 6.3|873667|37|NC_011729|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR723674 (Rhizobium flavum strain YW14 plasmid 5) position: , mismatch: 13, identity: 0.649

------gaaggaggtggcggtggcggtgacggtgatttcctga	CRISPR spacer
caaggcggtggcggtggcggtggcggtggcggaaatg------	Protospacer
      *. ** ****************.*** .**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

838740 : 896273

Geobacillus_virus(14.29%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012598154.1\|838740_839892_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0H3UZC2	Geobacillus_virus	5.9e-87	47.5
WP_157867532.1\|840137_840839_+	lipase family protein	A0A2R8FER2	Brazilian_cedratvirus	2.0e-13	30.3
WP_012598157.1\|841035_841659_-\|transposase	IS607 family transposase	Q331V0	Clostridium_botulinum_C_phage	6.3e-43	44.6
WP_012598158.1\|841938_843747_-	ribonuclease J	NA	NA	NA	NA
WP_012598159.1\|844071_844962_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_012598160.1\|844986_846039_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012598161.1\|846334_847510_+	sulfate adenylyltransferase	A0A2K9L0F0	Tupanvirus	4.6e-47	31.9
WP_012598162.1\|847670_850040_+	DUF4384 domain-containing protein	NA	NA	NA	NA
WP_012598163.1\|850152_851799_+	hypothetical protein	NA	NA	NA	NA
WP_012598164.1\|851856_852321_+	SRPBCC family protein	NA	NA	NA	NA
WP_012598165.1\|852433_853102_-	lipase	NA	NA	NA	NA
WP_012598166.1\|853240_854608_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012598167.1\|854952_855795_+	hypothetical protein	NA	NA	NA	NA
WP_012598168.1\|855819_857148_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_012598169.1\|857248_858067_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_012598170.1\|858327_859542_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_012598171.1\|859580_860177_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_012598172.1\|860186_861212_-	polyprenyl synthetase	NA	NA	NA	NA
WP_012598173.1\|861223_861883_-	hypothetical protein	NA	NA	NA	NA
WP_012598174.1\|861892_863020_-	hypothetical protein	NA	NA	NA	NA
WP_012598175.1\|863244_865155_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_157867534.1\|865756_866380_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_012598178.1\|868523_869963_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_041237639.1\|870093_870555_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012598180.1\|870554_870965_-	hypothetical protein	NA	NA	NA	NA
WP_012598181.1\|871332_872835_-\|transposase	transposase	A0A1W6JP07	Morganella_phage	7.0e-32	35.5
WP_012598182.1\|872902_873307_+\|transposase	IS200/IS605 family transposase	A0A1L2BWN1	Bacteriophage	4.2e-40	61.9
WP_012598185.1\|875979_878022_+	hypothetical protein	NA	NA	NA	NA
WP_012598186.1\|878009_879134_+	hypothetical protein	NA	NA	NA	NA
WP_012598187.1\|879863_880721_+	hypothetical protein	NA	NA	NA	NA
WP_012598188.1\|880720_881146_+	hypothetical protein	NA	NA	NA	NA
WP_041237985.1\|881255_882941_+	RAMP superfamily protein	NA	NA	NA	NA
WP_012598191.1\|883262_883532_+	hypothetical protein	NA	NA	NA	NA
WP_012598192.1\|883528_883966_+	PIN domain-containing protein	NA	NA	NA	NA
WP_012598193.1\|885723_886029_+	DUF2499 domain-containing protein	NA	NA	NA	NA
WP_012598194.1\|886048_886345_+	DUF3593 domain-containing protein	NA	NA	NA	NA
WP_012598195.1\|886905_887952_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041237986.1\|888501_889980_+	iron uptake porin	Q5GQG9	Synechococcus_phage	2.8e-09	37.0
WP_012598197.1\|889998_890334_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_012598198.1\|890468_890999_+	hypothetical protein	NA	NA	NA	NA
WP_012598199.1\|891012_891312_+	hypothetical protein	NA	NA	NA	NA
WP_041237987.1\|891736_893098_+	NCS2 family permease	NA	NA	NA	NA
WP_012598201.1\|893106_893370_-	hypothetical protein	NA	NA	NA	NA
WP_012598202.1\|893558_894056_-	hypothetical protein	NA	NA	NA	NA
WP_012598203.1\|894212_894590_-	hypothetical protein	NA	NA	NA	NA
WP_012598204.1\|894714_895044_-	hypothetical protein	NA	NA	NA	NA
WP_012598205.1\|895102_895582_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012598206.1\|895805_896273_-\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

1851450 : 1918648

Bacillus_phage(28.57%)

tail,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012599058.1\|1851450_1851870_+\|transposase	IS200/IS605 family transposase	A0A7E6	Microcystis_virus	5.7e-24	43.3
WP_012599060.1\|1852291_1853365_-	anthranilate phosphoribosyltransferase family protein	NA	NA	NA	NA
WP_012599061.1\|1853527_1854694_-	PBS lyase	NA	NA	NA	NA
WP_012599062.1\|1854703_1855498_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_012599063.1\|1855798_1857349_+	ferredoxin--nitrite reductase	NA	NA	NA	NA
WP_012599064.1\|1857379_1857595_+	hypothetical protein	NA	NA	NA	NA
WP_012599065.1\|1857856_1860532_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_041237684.1\|1861145_1861904_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012599067.1\|1862146_1863874_-	succinate dehydrogenase/fumarate reductase flavoprotein subunit	NA	NA	NA	NA
WP_012599068.1\|1864107_1865418_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_083775372.1\|1865857_1866763_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012599070.1\|1866786_1867272_-	DUF3122 domain-containing protein	NA	NA	NA	NA
WP_012598154.1\|1868104_1869256_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0H3UZC2	Geobacillus_virus	5.9e-87	47.5
WP_012599071.1\|1869328_1869862_+	cytochrome b6-f complex iron-sulfur subunit	NA	NA	NA	NA
WP_012599072.1\|1869906_1870278_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_012599073.1\|1870393_1870981_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_012599074.1\|1871010_1871280_+	hypothetical protein	NA	NA	NA	NA
WP_041238093.1\|1871471_1872170_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_012599076.1\|1872181_1873228_+	hypothetical protein	NA	NA	NA	NA
WP_012599077.1\|1873431_1874502_+	CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein	NA	NA	NA	NA
WP_012599078.1\|1874513_1875095_+	heterodisulfide reductase	NA	NA	NA	NA
WP_012599079.1\|1875091_1875958_+	disulfide reductase	NA	NA	NA	NA
WP_012599080.1\|1876132_1876546_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012599081.1\|1876564_1877068_+	sulfurtransferase	NA	NA	NA	NA
WP_012599082.1\|1877169_1877868_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012599083.1\|1877904_1878462_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_012599084.1\|1878666_1879755_+	photosystem II q(b) protein	A0A1D7SDF5	Cyanophage	3.4e-169	79.0
WP_012599085.1\|1879839_1880937_-	peptidase domain-containing protein	NA	NA	NA	NA
WP_157867372.1\|1881633_1882593_-	WYL domain-containing protein	NA	NA	NA	NA
WP_012599087.1\|1882531_1882795_-	hypothetical protein	NA	NA	NA	NA
WP_041237685.1\|1882840_1883296_-	DUF29 domain-containing protein	NA	NA	NA	NA
WP_012599089.1\|1883624_1883870_+	hypothetical protein	NA	NA	NA	NA
WP_012599090.1\|1884117_1886298_+	type I-D CRISPR-associated helicase Cas3'	NA	NA	NA	NA
WP_041238097.1\|1886386_1889371_+	type I-D CRISPR-associated protein Cas10d/Csc3	NA	NA	NA	NA
WP_012599092.1\|1889405_1890422_+	type I-D CRISPR-associated protein Cas7/Csc2	NA	NA	NA	NA
WP_012599093.1\|1890878_1891640_+	type I-D CRISPR-associated protein Cas5/Csc1	NA	NA	NA	NA
WP_012599094.1\|1891611_1892427_+	CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6	NA	NA	NA	NA
WP_012599095.1\|1892429_1893032_+	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_012599096.1\|1893172_1894150_+	type I-D CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_012599097.1\|1894146_1894440_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_012599098.1\|1904518_1905289_-	hypothetical protein	NA	NA	NA	NA
WP_012599099.1\|1905467_1906148_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012599100.1\|1906253_1906625_-	response regulator	W8CYM9	Bacillus_phage	1.2e-09	33.3
WP_012599101.1\|1906807_1908601_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	1.4e-05	28.3
WP_012599102.1\|1908779_1909562_+	aquaporin Z	NA	NA	NA	NA
WP_012599103.1\|1909852_1912210_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_012599104.1\|1912295_1912697_-	GPW/gp25 family protein	E5G6N7	Salmonella_phage	1.1e-05	34.6
WP_157867374.1\|1912780_1912933_-	hypothetical protein	NA	NA	NA	NA
WP_157867556.1\|1913168_1914848_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_012599106.1\|1915353_1915857_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012599107.1\|1915869_1916358_-	hypothetical protein	NA	NA	NA	NA
WP_012599108.1\|1916375_1916873_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012599109.1\|1916938_1918648_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	5.2e-39	38.5

DBSCAN-SWA_3

2569597 : 2627143

Bacillus_virus(11.11%)

protease,tail,integrase,transposase

attL 2576370:2576388|attR 2596076:2596094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015954326.1\|2569597_2570284_+\|protease	ATP-dependent Clp protease proteolytic subunit	G3M9Z8	Bacillus_virus	1.7e-20	32.5
WP_015954327.1\|2570324_2570924_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.0e-47	54.3
WP_015954328.1\|2571011_2571896_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_041238165.1\|2572459_2573323_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_015954330.1\|2573809_2574994_-	hypothetical protein	NA	NA	NA	NA
WP_015954332.1\|2575508_2575742_-	hypothetical protein	NA	NA	NA	NA
WP_015954333.1\|2575738_2576170_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
2576370:2576388	attL	NA	NA	NA	NA
WP_015954335.1\|2581171_2581597_-	hypothetical protein	NA	NA	NA	NA
WP_083775330.1\|2581677_2582151_-	hypothetical protein	NA	NA	NA	NA
WP_015954336.1\|2582869_2583499_-	type I-MYXAN CRISPR-associated protein Cas5/Cmx5/DevS	NA	NA	NA	NA
WP_015954337.1\|2583510_2584371_-	type I-B CRISPR-associated protein Cas7/Cst2/DevR	NA	NA	NA	NA
WP_015954338.1\|2584398_2586120_-	type I-MYXAN CRISPR-associated Cas8a1/Cmx1	NA	NA	NA	NA
WP_015954339.1\|2586116_2586761_-	type I-MYXAN CRISPR-associated protein Cas6/Cmx6	NA	NA	NA	NA
WP_015954340.1\|2586852_2587167_+	hypothetical protein	NA	NA	NA	NA
WP_015954341.1\|2587179_2587410_+	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_015954343.1\|2587626_2587992_-	hypothetical protein	NA	NA	NA	NA
WP_015954344.1\|2587991_2588198_-	hypothetical protein	NA	NA	NA	NA
WP_015954345.1\|2588210_2588435_-	hypothetical protein	NA	NA	NA	NA
WP_015954346.1\|2588406_2589324_-	AAA family ATPase	NA	NA	NA	NA
WP_015954347.1\|2589745_2589994_+	hypothetical protein	NA	NA	NA	NA
WP_041237715.1\|2589980_2590397_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_015954349.1\|2590393_2591281_-	TniQ family protein	NA	NA	NA	NA
WP_015954350.1\|2591288_2592995_-	ATP-binding protein	NA	NA	NA	NA
WP_015954351.1\|2592984_2595216_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_015954352.1\|2595208_2596039_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_015954353.1\|2596168_2598064_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	3.0e-112	39.9
2596076:2596094	attR	NA	NA	NA	NA
WP_015954354.1\|2598244_2598796_-	DUF3172 domain-containing protein	NA	NA	NA	NA
WP_015954355.1\|2598913_2599609_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_015954356.1\|2599803_2600037_-	stress-induced protein	NA	NA	NA	NA
WP_015954357.1\|2600542_2600929_+	hypothetical protein	NA	NA	NA	NA
WP_015954358.1\|2601290_2602352_+	glucokinase	NA	NA	NA	NA
WP_041238169.1\|2602481_2604155_-	hypothetical protein	A0A0N9QAZ1	Chrysochromulina_ericina_virus	5.8e-35	29.7
WP_015954361.1\|2604920_2607452_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015954362.1\|2607562_2607961_+	hypothetical protein	NA	NA	NA	NA
WP_015954363.1\|2608060_2608396_-	hypothetical protein	NA	NA	NA	NA
WP_015954364.1\|2608890_2609334_-	VOC family protein	NA	NA	NA	NA
WP_015954365.1\|2609367_2609874_-	TIGR02652 family protein	NA	NA	NA	NA
WP_015954366.1\|2609989_2610538_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_015954367.1\|2610604_2610730_+	photosystem II protein Y	NA	NA	NA	NA
WP_015954368.1\|2611036_2611375_+	hypothetical protein	NA	NA	NA	NA
WP_015954369.1\|2611392_2613105_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_015954370.1\|2613270_2614743_-	insulinase family protein	M1NN74	Moumouvirus	2.3e-11	22.3
WP_015954371.1\|2614935_2616492_-	peptidase M16	A0A2K9LA15	Tupanvirus	1.3e-17	24.4
WP_015954372.1\|2616677_2617391_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_015954373.1\|2617458_2617914_-	hypothetical protein	NA	NA	NA	NA
WP_015954374.1\|2617961_2618333_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.5e-07	34.7
WP_015954375.1\|2618343_2619696_-	PAS domain S-box protein	NA	NA	NA	NA
WP_015954376.1\|2619692_2620166_-	response regulator	NA	NA	NA	NA
WP_015954377.1\|2620175_2622458_-	GAF domain-containing protein	Q8QNA6	Ectocarpus_siliculosus_virus	1.3e-24	22.3
WP_015954378.1\|2622851_2623553_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_015954379.1\|2623691_2625122_-	pyruvate kinase	NA	NA	NA	NA
WP_015954380.1\|2625437_2626526_+	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-106	58.0
WP_015954381.1\|2626522_2627143_-\|tail	low-complexity tail membrane protein	NA	NA	NA	NA

DBSCAN-SWA_4

3149169 : 3165564

Bacillus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015954843.1\|3149169_3149937_-	pyruvate formate lyase-activating protein	A0A2P0VNQ0	Tetraselmis_virus	6.6e-26	28.5
WP_157867605.1\|3150198_3152427_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.3e-183	45.2
WP_015954845.1\|3152918_3157355_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	5.9e-26	31.3
WP_015954846.1\|3157525_3157753_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	6.6e-19	56.8
WP_015954847.1\|3157756_3158683_-	response regulator	B5LWA6	Feldmannia_species_virus	5.7e-08	29.2
WP_015954848.1\|3158669_3161480_-	response regulator	A0A1V0SGX0	Hokovirus	3.1e-65	32.8
WP_015954850.1\|3163747_3164452_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.6e-40	41.7
WP_015954851.1\|3164469_3165564_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	8.5e-35	34.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage