CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012416	Wolbachia sp. wRi, complete sequence	12 crisprs	DEDDh,RT,PD-DExK,cas3	4	3	16	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_012416_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_1

51701-51805

Orphan

Consensus_repeat	Method
CGTCATCCCGCTACTTGTTAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_1

>merge|NC_012416|1|51701-51805|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGGCTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGG

>NC_012416|1|1|51701-51805|CRISPRCasFinder
CGTCATCCCGCTACTTGTTAGCGG	CTGAGATACCGCGAATGAATCGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCT
CGTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_006280297.1\|39341_40268_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_012416.1\|WP_144078574.1\|59796_60231_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_012416.1\|WP_084741697.1\|59474_59639_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_012416.1\|WP_006280163.1\|49327_49969_+\|dioxygenase	unknown	unknown	gnl\|CDD\|239542
NC_012416.1\|WP_094189578.1\|58617_59450_+\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_012416.1\|WP_173862876.1\|50065_51568_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_012416.1\|WP_007549339.1\|54187_54784_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_012416.1\|WP_007549337.1\|53510_53816_+\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857
NC_012416.1\|WP_006279727.1\|40257_40611_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_012416.1\|WP_012673044.1\|41920_43555_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NC_012416.1\|WP_012673050.1\|57431_58037_+\|membrane-protein	unknown	unknown	unknown
NC_012416.1\|WP_010082071.1\|59631_59793_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NC_012416.1\|WP_006280296.1\|38171_39038_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_012416.1\|WP_007548937.1\|40652_41915_-\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235351
NC_012416.1\|WP_012673049.1\|54796_57313_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NC_012416.1\|WP_012673045.1\|43763_44882_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NC_012416.1\|WP_006279883.1\|52262_53450_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NC_012416.1\|WP_007548938.1\|35592_37758_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673046.1\|45108_46053_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007549338.1\|53815_54142_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133393

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_006280297.1\|39341_40268_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	5.98788e-123
NC_012416.1\|WP_144078574.1\|59796_60231_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	1.66367e-14
NC_012416.1\|WP_084741697.1\|59474_59639_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.35374e-09
NC_012416.1\|WP_006280163.1\|49327_49969_+\|dioxygenase	gnl\|CDD\|239542	cd03459, 3,4-PCD, Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	3.29104e-50
NC_012416.1\|WP_094189578.1\|58617_59450_+\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.31668e-30
NC_012416.1\|WP_173862876.1\|50065_51568_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_012416.1\|WP_007549339.1\|54187_54784_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.23472e-30
NC_012416.1\|WP_006279727.1\|40257_40611_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	9.25678e-17
NC_012416.1\|WP_012673044.1\|41920_43555_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	2.43285e-172
NC_012416.1\|WP_006280296.1\|38171_39038_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.06508e-24
NC_012416.1\|WP_007548937.1\|40652_41915_-\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235351	PRK05137, tolB, Tol-Pal system protein TolB.	0
NC_012416.1\|WP_012673049.1\|54796_57313_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NC_012416.1\|WP_012673045.1\|43763_44882_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NC_012416.1\|WP_006279883.1\|52262_53450_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	6.46935e-16
NC_012416.1\|WP_007549337.1\|53510_53816_+\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	6.68647e-35
NC_012416.1\|WP_010082071.1\|59631_59793_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.08186e-07
NC_012416.1\|WP_007549338.1\|53815_54142_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133393	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.53457e-35

>NC_012416.1|WP_173862876.1|50065_51568_+|leucyl-aminopeptidase
MYSLQLFATEIPAMKITISKISPDFKTIVMGLFEDNETVNDDGVLQGKQVIDNIKQFSDFNGSFGEFFSTALPEEKNVIVVGLGKKDEWNENKELNIGGKIYCELSRLKIKKAAVLIEGSAANVAYGAFLRSFKFDKYKTKKDEKITEVEEITVLVKDEQLSNAERSFEHLRQEGESIFLARSFITEPPNILYPESYADHIKKELTKLGLEIEVLDKKQMEEKKMGALLGVAQGSSKEPKLVVIKWNGASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSATVVGVMHALAGRKAKVNAIGVVALAENAVGGNAQRPSDVVTSMSGQTIEVLNTDAEGRLILADALWYTQDRFSPKFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLIDAGNEVNEKLWRFPMNETYDKIIDSPIADVQNIAPAGSGGDSIMAAQFLQRFVNETCWAHLDIAGTAWHEKGTDICPRGAVGFGVRLLNKLVEKYYEAND
>NC_012416.1|WP_006280163.1|49327_49969_+|dioxygenase
MNVKNILLAFLVQMVFSLPLFAADPVLLNCIETPEIYDLDARPKNFNSSNNLRRKPGSPNSAIGELIHIVGKITDINCLPIQNAVVSIWHANSRGVNHYDKNIEDDLNFAGSGRFVVNNLGYYNFITIAPGKIGDRAPHINFLVQHPDFPEFTTQMFFADHNCDNCADPVLEDFVSNGLASLLITPFTYSDQVIKTYTFNITLGGYNKFSNKR
>NC_012416.1|WP_012673046.1|45108_46053_-|hypothetical-protein
MVASYSVLKRYALAYIKKSGSNSDVKEFLQFCNTQNTTNWSEENFKNAYEKFTHPNSSNRHDTGSRNDQYNAGNNAQPTGSQITHIHVHNRGLDFWDYLLLQCWMDSLFGGRGHTTVNNITNINNGNTTHQGRKENKKESEDSRKLLALGIVAAVVCVAFHAGMCFWYNSSRKVARKKEKIDYLDSKFKTFRNIEFAVGVVSLAALVACAVYPVLPVWGLAILGVNSLVCFAGGLAFHMKHEEESENIEKAKGAVDSCLRQGHGYGDSSRYDAPPPYFSQDPNTTPTAPPQNAFDNPYLQQKFGNCKGFTRDKN
>NC_012416.1|WP_012673045.1|43763_44882_-|molecular-chaperone-DnaJ
MSKKDYYDLLEVGRNASIDEIKKAYKKLALKYHPDRNPGNQEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIFNDFFGGGFGGGASRSRAKRSTTGVSGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDTCQGTGGEGAIKPVQCHTCQGSGRIRTQQGFFTIERTCTTCYGEGEIIQNKCKKCGGSGRRRDEVNISVSIPKGIEEGAKVRISGKGEAGTKGGKSGDLYVYVKIIFHKIFARNKADLHCKVPIRMTLAVLGGEIDIQSIDGAKIKVKVPEGTQTGTKLRCREKGMPYMNSHARGDLYVQVIVETLNPKNLTKKQIELLKALEEEENASVQQQSEGFFSKVKKK
>NC_012416.1|WP_012673044.1|41920_43555_-|ribonuclease-J
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGVGFADETMPGVELLIADIDFIAQRKKDLLGIIITHAHEDHCGAVPHLWEELQCSIYTTKFTVNFLKEKLKEFRLEGIVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEMGSALHTGDWKFDPKPVVGLTSNMERLKEIGDKGDLLAAICDSTNILSKHHPESEGEIYNNIYNIIKRSKKLVAVSLFASNVARIETISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPQFLEAKEAVNFPREELVLLCTGCQGEPLAATARLAAKSHQAFKMQQGDTMIFSSKIIPGNETRAHNMLNAFIEMGVEVITEKTEHVHASGHPTREELKEMYSLIKPKMSIPVHGEYIHTHAHVKFAKECGVAKAIMIAPGDIVNLENGEKVDSIDVDYFGIDGMLLRHPESSVIKMRKRMRDAGVIVVTAVVNKKNKLLAKPKVFVPGVFEVLEDAATIQKIVKKVESLFSLQPTKKIKNKIESSILSILKEYLLKRPIIEVQIEQV
>NC_012416.1|WP_007548937.1|40652_41915_-|Tol-Pal-system-protein-TolB
MKLFVHLVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSNCGLFNVKRGAEAESKSWKSDTVVTVSLSEISGSALELSFRLFDTFTKRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIAVMNQDGSNIKYLTNGDRFVSTPRFSPNGKGIVYISYANGKSYIILKNLKDNTESIISTFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQKYMAFSSDISGSQQLYVIDFTNKSKKPKRISFGSGRYATPVWSPKGDLIAFTKIQSGKFYIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTESPSNSKLYLVDLVKKNQKMVSTPTNASLPDWSYF
>NC_012416.1|WP_006279727.1|40257_40611_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPAKSTEDVITSLIEFANKRKITITKEEMLKIAQLVRIKLSNDEIDHYSKELTMLDWIHDTLLQVNTEGVSPMRYGSIDKDIHVRDDVINSQNIKEEILSNTKPEHGYFVVPKVISD
>NC_012416.1|WP_006280297.1|39341_40268_+|ribose-phosphate-diphosphokinase
MKIIIGNASKELGESVVNRLDVQPSSAWISKFTDGEVNVEVANDLYNQEVYIIQSLSPPVNDNLMELLLIIDAVNRLGAKRIVVIIPYYGYSRQDRIIKNNNMQSALSAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPITNLNCFEAFVDSIHTENLAIVAPDVGAIGRARAFAKTLEEKYKIGLSDKIIVVDKYREKAGTSQVMNIIGEVANKNCVIVDDIVDSGGTLCNAALALKSYGAKSVTSCITHGVLSGSAVEKISSSSLDKLVITDTILHKLEKTGKIEVVSVVNILTHFIQGGRNAS
>NC_012416.1|WP_006280296.1|38171_39038_+|ankyrin-repeat-domain-containing-protein
MTEETKDGYASLYVAIQEGNIEAAELLIKCGTNVNDHYERNRTPLHIAIGRKQLEIAKLLIKNGANVNAKTQNHGKDDLTPMHFAVFANTPEFIELLASHGALINERESTEGYTPLHFAALYGNKNIIQALIDKGQDIEDVDNNGRTALFLAARQCTEAEDDSRIEIIKYLIDKLKADVTKKDNNNNAVLFPAANNCPGKVVEFIIEQYIKIFELENFINHKNNDGMDALDIALNSGNEKAIEVLRSYGADIKNKVDGSIQKITAEKPSSTLDRAESAEVAPPIKQRV
>NC_012416.1|WP_007548938.1|35592_37758_-|hypothetical-protein
MLSLIRKTLRKKMTHQVNDSKLKEKDEKSILKLASKIKGKKSSIAEELEKISKKEKQRILTTEVSKHRGKEPTIISLAYAILRKDSIAVEKMLRVAKENGILKDILDATTTIKYPGGQEETCTPLTYAILCKNSKTIEETLKVSKENGILKDILNATTTIKYPDGRRATVTPLAYAILYEDSIAIEEILKVSKENGILKDILNTTATIRYPDNKEVTYAPLAYAMFWKDSKAIKEILVADEENSILKDILDATTTIKYLDGQEEIYTPLTYAISCKNSKTIEEILKVSKENDILKDILDATTTIKYLDGQEEIYTPLTYAISCKNSKTIEEILKISKENGILKDILDATTTIKCSDGHEETCAPLTYAILRKDSIAVEKMLRVAKENGILKDILDATTTIKHSDSREVTYTLLAYAILRKDSIAVEKMLRVAKENDILKDILDATTTIKYPDGQEETCTPLAYAILRKDSIAVEKMLRVAKENGILKDILNTTITIKHKNNQKVTDKLLAALHDRKVIQEILDIARENDILKDILNATITIKYPDSEEKIYTPLTYTISCKSNEAFNTTRAINQDGQEKTHIPFPTVSVLDERETELKLKEKRQSRRDEGLNFNNGSSDKNVEIKVNGDILLQHSSGTKNEINHTAVRNDVGGVKPLIESRVNVKVQNINAVIATSVTFKMIATSVTLELVASKITCVLSKPTTKLEEVAITYFQGLALYL
>NC_012416.1|WP_006279883.1|52262_53450_+|MFS-transporter
MESRAKAWFIWLISNLVVIFSNMQIIYTFISVNLEKELGLTIAQVALANSVYTWTFAILQFFSGATFNVFSSKKIYFFSLSTMILGFFVLINSDNFSHLILSQVLIATGASFGFIGAAHTSSICFSAAQFGLMFSLVQTISSLSALVIQILFSNLLAEDAYWKNLIVCIILFGVLIFVLTLFCPNTLPESSSEKRTIKSSMKTVMCSILTVLKLRDIWITSVVGAITFGTFLALNTLWAPRLLGNSELNAMESGIATAILWLGLAVGAPIADRISNLFKNRKHVISAFALLQGVSIIILLYSHLTVHVVYFCMLMFGFFAGGHMLNFTVGSEIVKRKYISTSSSIINGFMFIGSGVIVSMLALFTDHKMALFAIFAILIVAGILNYATKETYSKK
>NC_012416.1|WP_007549337.1|53510_53816_+|integration-host-factor-subunit-alpha
MDHVTTKDTTVTKATIVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVMIQARNSVSFRPSKIIKKSINN
>NC_012416.1|WP_007549338.1|53815_54142_+|MerR-family-transcriptional-regulator
MNKEKLFYTIGEVAEELHLEQHVLRFWEGQFHQIKPTKRKGRRLYDRKCIEAIKKVKYMLYDKGYTIKGVQKEFGNDIKVTKNLLQELTDLRDYLTSKINSEESNKQT
>NC_012416.1|WP_007549339.1|54187_54784_+|M23-family-metallopeptidase
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYRDNNNAQNVEVNCKFVMPVKGSATSSDETCKDGIKIAAQNGTNVIASAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQGQVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLAHTNCD
>NC_012416.1|WP_012673049.1|54796_57313_+|leucine--tRNA-ligase
MKYDFKNVERFCQDKWDFSVSKSSKQEKCYVLEMFPYPSGKIHMGHLRNYAIGDVIARYKRARGFEVLHPIGWDAFGLPAENAARDNNISPEIWTKENIDNMRAQLKSIGLSYNWNRELSTCEPNYYTHEQKFFLDFLKHGLAYRKESWVNWDPVDQTVLANEQVVDGKGWRSGAVVEKRKLSQWFLKITDFAEDLLKCLQSLKNWPEKVKTMQERWIGKSEGATIEFEVVGLNKKLKVFTTYPHTLFGASFCAVAAEHPIVQDLKNGSSVVIPVLDTGIQEIKSKRENDEKIGVYTGLNVKHPFLDKELPLYIANFVLMEYGEGAIFGCPAHDQRDFEFAQKYNLPIIPVISSAHLGVIPARDQNSYNGSQCQATQMTKEAYTGDGVMFNSEFLNGLMVSEAKEVIIKKLKEKGIGKKTTNYRLHDWGVSRQRYWGCPIPIIYCKDCGTVPVPEKDLPVILPADVEFTSGGNPLDKHPTWKFVDCPKCGKQAERETDTFDTFFESSWYFAAFCSEDKSIDKDACNRFMPVDYYIGGIEHAILHLLYSRFFCRALTKCGYFDIKEPFSTLITQGMVCHATYKDENGKWLFLAEAKELIARGTKVQVGKVEKMSKSKKNTVDPNFIIEKYGADTARLFVLSDTPPEKDMEWSDDGVEGCSRYVNKLWRMVMQLKPVNMHYDNKSVTGGLLEYRKKIHKLLHGLTDDLENCRLNCVVAKFREMTNLIAEIDVAAGKSLIDEGICILIRVIEPFMPHLAESLWQEIGGQPWPKADESLLVDDTVTIAVQINGKLRATIEVAINLPQEELKKIAIDSVSSKIDQNKVRTVYAVPNKIVNIVI
>NC_012416.1|WP_012673050.1|57431_58037_+|membrane-protein
MKMKRLCALAVLLTSSLAGTANNSASKSEDQYYAGLNFGAGWGGGLKIKPSVVFGYHHDKNSKFELEVLTDISDMFGKEEKKMGASLLANYRYYPDLDIDPVKLYVSGGLGGYLQVIPFGFGNSGTSEPASKDIEAAGEKASVVDKILGSISYKLKVGVDYEITPQIVGTVGITAGGQLSGFKPPVQIPDAILEVGIRYNF
>NC_012416.1|WP_094189578.1|58617_59450_+|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWARIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA
>NC_012416.1|WP_084741697.1|59474_59639_-|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQHTRTAIFEYIEIFYNKQRHY
>NC_012416.1|WP_010082071.1|59631_59793_-|hypothetical-protein
MSSAINKQLVMNSLLMAINRRKPVKNLLLHSDQGSQYTAQGYQYLLAVKNIDE
>NC_012416.1|WP_144078574.1|59796_60231_-|IS3-family-transposase
MFFYIVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLEAIQKIYQVSKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW

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Crispr_ID: NC_012416_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_2

296536-296634

Orphan

Consensus_repeat	Method
ACCAAATGCTGCTCAGTTAAAAGATAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_2

>merge|NC_012416|2|296536-296634|CRISPRCasFinder
ACCAAATGCTGCTCAGTTAAAAGATAAAGACGAGAAAATAAAAGATTTAGAGGCACAGTTAAGCAACCGACCAGATGCTGCTCAGTTAAAAGATAAAGA

>NC_012416|2|2|296536-296634|CRISPRCasFinder
ACCAAATGCTGCTCAGTTAAAAGATAAAGA	CGAGAAAATAAAAGATTTAGAGGCACAGTTAAGCAACCG
ACCAGATGCTGCTCAGTTAAAAGATAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_012673116.1\|293041_295513_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
NC_012416.1\|WP_007548876.1\|301440_302916_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NC_012416.1\|WP_007548874.1\|303165_304431_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_012416.1\|WP_007548880.1\|297734_298055_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|273280
NC_012416.1\|WP_049749678.1\|291503_292235_-\|26S-protease-regulatory-subunit	unknown	unknown	gnl\|CDD\|224143
NC_012416.1\|WP_147435549.1\|300163_301375_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007548905.1\|288640_290044_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NC_012416.1\|WP_167494748.1\|305328_305469_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007548879.1\|298054_299659_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_012416.1\|WP_012673118.1\|299684_300092_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_012416.1\|WP_012673121.1\|304560_305145_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673122.1\|305478_306576_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|179699
NC_012416.1\|WP_007548901.1\|283676_284324_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NC_012416.1\|WP_007548907.1\|290202_291330_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NC_012416.1\|WP_049749679.1\|292238_292904_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_012416.1\|WP_006280567.1\|287935_288610_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NC_012416.1\|WP_007548882.1\|297074_297590_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NC_012416.1\|WP_121692651.1\|286623_286896_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673115.1\|284307_284949_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NC_012416.1\|WP_007548904.1\|287088_287886_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_012673116.1\|293041_295513_-\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
NC_012416.1\|WP_007548876.1\|301440_302916_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.83566e-13
NC_012416.1\|WP_007548880.1\|297734_298055_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|273280	TIGR00810, secG, protein translocase, SecG subunit. This family of proteins forms a complex with SecY and SecE. SecA then recruits the SecYEG complex to form an active protein translocation channel. [Protein fate, Protein and peptide secretion and trafficking].	1.97465e-12
NC_012416.1\|WP_049749678.1\|291503_292235_-\|26S-protease-regulatory-subunit	gnl\|CDD\|224143	COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].	2.1434e-37
NC_012416.1\|WP_007548905.1\|288640_290044_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	7.60698e-13
NC_012416.1\|WP_012673118.1\|299684_300092_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.3141e-52
NC_012416.1\|WP_012673122.1\|305478_306576_+\|AAA-family-ATPase	gnl\|CDD\|179699	PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional.	1.63727e-71
NC_012416.1\|WP_007548901.1\|283676_284324_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.2849e-56
NC_012416.1\|WP_007548907.1\|290202_291330_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	4.49386e-08
NC_012416.1\|WP_049749679.1\|292238_292904_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.000822101
NC_012416.1\|WP_006280567.1\|287935_288610_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	9.69488e-93
NC_012416.1\|WP_007548882.1\|297074_297590_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	7.42509e-80
NC_012416.1\|WP_007548879.1\|298054_299659_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_012416.1\|WP_012673115.1\|284307_284949_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.62714e-86
NC_012416.1\|WP_007548874.1\|303165_304431_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.25469e-71

>NC_012416.1|WP_012673116.1|293041_295513_-|valine--tRNA-ligase
MLKEKYGFKEVEDKCNILWEGSKVYRWNGGKDNTFTIDTPPPTISGKLHIGHIFSYCHTDFIARFQRMLGKDVFYPIGFDDNGLPTERLVEQTYKTRAKEVGREKFIEMCHEVIEKSKQEFKELFKSVGISYDWDLEYHTISKETVTLSQMSFIDLYNKGYAYRKMQPILWDPVDKTAIAQAEIEDKVFESSLNTIVFSTQENEQINIATTRPELLPACVAVFCHPEDARYTHLIGKTAVVPITKEKVLIIADDKVKIDKGTGLVMCCTFGDELDIYWQQKHNLPMKIIIDQDGRMNLDDVIPPHPGVMKVADTGIYDEINGLKVTAARKRMIEILSGKGLLIESTSISHSVKCAERSGAPLEILPTYQWFIKTLEQKAQVLDKVKECNWHPATMRKRMEVWIEGLNWDWCISRQRYFGVPFPAWYSKRKGEEGKIILAEVKDLPIDPLKDLPKGYSKEEVIPDQDVMDTWATSSITPQLSALAVNSEFSLPNHRYDTIFPADLRSQSHEIIRTWAFYTILKAHYHANSLPWKNIMISGWCLADDKKKMSKSKGNIITPHVILETYGADVVRYWAANSRLGVDTVYSENIFKIGQRLVTKLWNASKFVSMFMEKHQTVSINSISETMDKWILSKLYKVIGRATNNLLQFEYCEALGAIEEFFWKDFCDNYLELVKKRAYGSSEATLSAKQSLAYVLNVILRLFAPFLPYITEEIYHQLYSYNSVHNQSNWPSKEELIYDKYSEEMGDNVIQILNIIRKIKADNNVSVKHLIKKLVIKADLREDKLNQSAQNDLQAVCNAEMIEWMQSELETENGKYIVNIDLY
>NC_012416.1|WP_049749679.1|292238_292904_-|hypothetical-protein
MALLASGTLAVAPYVAFLSSIAAFNVALPVALSLSILSTLILVLSCKMISRNKKLAAQGAELNEKTELAAEQENTIQSLEPQIKGLNKKVSDLETKLDEISRQANGAATKDEVEELKAGLNGAAKDAVKKLIEDAAEELKKELEVKIGNAATKDEVKKLIEDAVKEVEVKEELQMKFYEKGKKRYKTTFDDVILQNEKKQELKEIYESQKESDAALKKGEG
>NC_012416.1|WP_049749678.1|291503_292235_-|26S-protease-regulatory-subunit
MYGLPGTGKTMIAKAIASETKDTSAFISVSGSSLFNIKNIDDLFKKAEENAPCIVFIDEIEGFGKAYSSDDNVQYLKHFLTKIDGADHVKGVTVIAATNHIGILDKALVRGGRLGNHIEIPTLGTDTRKKIINKYCQKENLQSIAHTILNNTSEGFSPANLISLLKEIEGCASKVRDKTKTAAICRSFKRTHNIKKVSNKQTNRKIENSIGESQQYTSRPSHKLNDALCDSGYTSICSTLINS
>NC_012416.1|WP_007548907.1|290202_291330_-|hypothetical-protein
MSNLLSEANAFYFVASSLATLTLLTSLALIVTSNVPLPLILALATLSVLVLALSYKIISNNVELEAKVKGQLEHKEEMLSLEHQELRDENTRLNERVDSLMEELCQCKLESEKNKLCLKSEYEDELRLRLEYEDELNLELEHKSREASSLRTQLTMLRKKVEVEEVKQLKTLESEEQHESSESDIEELEKKLCQSEKEKKELEGKVSDERQKRTDLESKVDKLCTKEKEYLSKIKELEKESLSLQKEEKESDNTLTTVNDDRDNKVKELNSSLLKQSSQIEQLQKALLEKKKEEVLFLQRMIEYVTDEVEKLVRENEVIRDDDKKVILQVIQATKSVLVEEAAQYLPGETSVPSFMEDPGYTSGCSTPTNSCHTF
>NC_012416.1|WP_007548905.1|288640_290044_-|hypothetical-protein
MSNLLSEANAFYFVASSLATLTLLTSLALIVTSNVPLPLILALATLSILVLALSCKIISNNKKIEVERNKFAQKEQELENKITLGKEAEKAANKEVEKLKHELTREKQNLDKRAKKLNQKVNESEVERESLLEEKESLEKKLETAKNHTFEINNELDKTRKEIGKLSEQEEKLKLEISCLKKQLEERSRFIAKLKMEVDDNKHLELENKGLNDRIETLREVQKALREKKHELSEKVEVLNKEKNKLSKEVKELREEQEKLYISLDKLQCKIKEVNKEKEDLRQVLSCSYSWQEFSEEMERCSSREKRMRESCSNELKRLEDLILEKSSEIEQLEKDLLREKEEKMSYVARITEYMLCKLEESIKRSKVIKNDDKTVILQEIPVMKSVLEEVVQDLRGKTSGKDSEYASLPDETSVPLHAGDPGYESEEDSGYNSRSSTPIKLPNSLLTESYERSQFNQSESICKTQQ
>NC_012416.1|WP_006280567.1|287935_288610_-|orotidine-5'-phosphate-decarboxylase
MNPIICALDTQDLNKAISLANALRGKVGMVKLGLEFFAAQGLSGVQEVAKCNVPIFLDLKLHDIPNTVAKTVEVIKVLNIEMLTLHISGGTKMLEEALSVVQGTKIKLIGVTVLTSMSNEDLNELGVAREAKSQVILLAKLAKKIGLHGVVCSALEAQEVRRECGEDFKIITPGIRIDPGHDDQKRTATPKEAINSGADYIVIGRPITKTTSSAELILKSMKEF
>NC_012416.1|WP_007548904.1|287088_287886_-|hypothetical-protein
MSNINRIIREVIKEFRSKLPDKEIEEYSGKLNKLHIYQCNKHIIENKKLYHYTINGKTHAMGQHGHNFVKSLEVILRNKPQISLEEVIDFMEKIINFGIDSCYGAFEMIFESRSGVTIDDAVNFVKDSLSSKFYGFHGSGIFKVILELNPESSLEEIEKQFSKVVDPYFLNAWSRESERAFAKICRLCREGHVENMQKFDFSNFNLDQDSAGALRALLQYCVDVSNQKALGDSHELHREEMEGIYKFDDNYDLNLDSDHNDSIWH
>NC_012416.1|WP_121692651.1|286623_286896_+|hypothetical-protein
MVHSKRCHSSAPFLVIRVADTGIQLLCNLIKNVCFSVRQLPLAHQLSYKQNFWIPVSSTGMTSSVVQFTFKNEYPYSYVLGTEMASFFIC
>NC_012416.1|WP_012673115.1|284307_284949_+|amino-acid-ABC-transporter-ATP-binding-protein
MIKMHNVCKLFNNIPVLNNINLIIEQSIVGLAGPSGSGKSTLLRCIQKLEVLDSGSIECNDSTGFVFQDFQLFPHMTVWENLTYAPKLKNKTQDQSYSLLESLGIASKKNDYPNNLSGGQKQRVALARSLMMNPKILLCDEPTSGLDVATIVDVVELLQSVRDMGITMIIASHNLDFLTKISDRIILLKNGKIIVDINPKEIDEPTNYLKNNY
>NC_012416.1|WP_007548901.1|283676_284324_+|amino-acid-ABC-transporter-permease
MQELISNFLFVGTGLAFTLKLLIGGLLLGMSLGGLFSVLRYNKICIPLINGIISVIRGTPLILQLSVVYFMTPTIAGIKLNIFSAGIIAFGLNSCAYIAEILRAGIETISKNQFEAAKTLQIPSFYMWRDIILPQVIKNILPAMINEIIALLKETALISTIGGVDIMRSAQMLAAEQFTYFIPLCLAGAYYYALVLLIEYIGKKIEQKGIYDKNA
>NC_012416.1|WP_007548882.1|297074_297590_-|gamma-carbonic-anhydrase-family-protein
MYHILKYKDYEPKIDESAFIAGGSHIIGKVEIGRDASIWFNCVIRGDVGSIKIGNGTNIQDGTVIHVDRNPGGDTIIGSMVTVGHFCVLHACTVHDKAFIGMGSTVMDHAVVEPEAMVAAGSLVTHGKVIKSGEIWAGRPAKFFKKMSNEEIKHIAQSAQNYIMLMKEYKN
>NC_012416.1|WP_007548880.1|297734_298055_+|preprotein-translocase-subunit-SecG
MSVAVLSIFQIILVVVLVILVLLQPPGSSSLSGFSNTQQGVNSMIPVKSSENPLSRITAIVAGLFIINTLLLSGLCSKDVHKKSIAEKIILEKKQESESTSVPFEN
>NC_012416.1|WP_007548879.1|298054_299659_+|CTP-synthase
MKEAKFIFVTGGVVSSLGKGLVASSVGALLQAHGFKIRIRKLDPYLNIDPGTMNPTQHGEVFVTEDGAETDLDLGHYERFTGIKATKDDNITTGKIYHELLKKERRGDYLGKTVQVIPHVTDLIKSFIFNGTEGLDFVICEIGGTVGDIESQPFLEAIRQVNYTLGKQRVILIHLTLIPYLTAAQELKTKPTQHSVRELNSAGLQPDIILCRSEKEIFDNQREKIAKLCNVSLSNVIPAPDVSHIYELPVLYSQCGLDTQILEHFHLSKPKPSLTEWDQIVHSIRHPTQEVTVSIVGKYTEFPDAYKSLVEALNHGAISNKVKVKINWVNSREKEEKPINEKLIGEKLQNSHAILVPGGFGDDGVEGKILAINYARTNNIPFFGICLGMQLAIIEFARNVVKLEDAHSEEFRNCKHPIVKLAGDQDDDLGGTMRLGAYKCNINANSKMMDAYSNTTISERHRHRYIINSDYKDDLEKNGLLCSGISEDGTCIEAVELESHPWFIGVQFHPEFQSKPFSPHPLFVSFIEAAIDKK
>NC_012416.1|WP_012673118.1|299684_300092_+|nucleoside-deaminase
MELAIEQAKLAQKNDEVPIGAVIVSGDNIISSAHNISSDPTAHAEMLAIRQAFSTSTLCDTDMYVTLEPCPMCAQAISFARIKRLYFGAYNPKGGGIENGAKIFQFCSHIPEVYGGILETECSFLLKDFFEKLRT
>NC_012416.1|WP_147435549.1|300163_301375_-|hypothetical-protein
MSPLVLVIVAVTFFLTAIASMSLFVLYKKVKGERKHEVIVNNAVFNISLEEAANDLFSGLSTIAERGAEAGALYLEVKEKTESVAKKMTSKKELIEARFQNIQENFINKLSNFEELQGARDSSTLKKFYAAVKDVLKIRSSIPISNLHLLSLVYHLSLEVSYAIFQAITDPILGSTILTAISERKLPEDKQWAKVLKNTVPNLIRNQEVVRNVIVPTLTDILKSLSESREERKFIIYTLVCLKEVIDEVYTTSVQESLYRILGVELANSLNGMVQAISNLLGCYGHKEVERARTANELDYRVGKLTPEETQQFVINLGERVGSLREFEGRVTNKQSISKLIDYCLDPKLNDREAAATLLNYILTCTEDGRYLAAEAGTNNNLSSNSNVVLITHVAANRSAQLD
>NC_012416.1|WP_007548876.1|301440_302916_-|ankyrin-repeat-domain-containing-protein
MTTNTENNNRINIVREQAGNAVHSDIAYSERIQKSVENEALCDAWSNFEYFEDVLRIKNSTDRENRIKQLIKEDLDINATKNGKTILDVAIEKKCSSKVISSLISNGSRIDTINASDRTVLHRSVRNENRKVVELFLEANEKEVSQYLVARFLPLSMLYQKIEVNAKDNDGCTALDYAQYGSEMYSLLQKYGAQHSEKFLYSRNLNIGELDLNKLVSDHNYCFDVLTKALEIEDRCEKEEVIDWLLKNGANINVNKGDQALLSVAAEKGDVENAVLLLERGAHEGVNSQDAEGRTLLLNAIIQDKLGHAKYLIKQRVNVNIPDNNGNSSLHYAVVNFIKQRLIECDETYTANATFYDFLKNGADLYIKNHDNLTAFEYAFHARIAPREAVYLFKLYIERGDQSENMQLVKNFKLPSGETLLEYFFNNKLFDSAQSCIDLGANVSHNGSSLLIQALQNRDIEGIGFLYETEQTFQITQTFQIIRKTVSCISK
>NC_012416.1|WP_007548874.1|303165_304431_-|MFS-transporter
MQTRVLISAILCRIAIWYDHMLFIDLVNIISREFCCAKDVYNRILQLFGIAGLGAMVRPLGAFIFGHIGDRYGRRMALTIAILLISIPSSLVAFIPSYSKIGITSTILLLAIHVTQGIALGAEQGGSSVYLIEHLPNKKKLGMFFGIISFGRSIGILLSVIVVIICKKNTDFNAWGWRLPFTFSFVLGLISAYSVYTLGETPAYEENRKQRNLSDLPIIELIKRYKRALILAILISVPVNVVVGFTIFLRTIAKEIVSVETYVTTYVNEIVLIITSILMPVSSIALGMLADKVGKERTTILFTVITMVLCCPVLSTAYYYKSYLIIMLGVMALSIIERGINPIGIVAAELFPTNVRFSGVSLSRNISYALHGGFTPMICTWFTITFPQVNFAAGLYVVFCLLVSLVAILQIKPQDKKFDWS
>NC_012416.1|WP_012673121.1|304560_305145_+|hypothetical-protein
MVGVIYLAMLGVAAIIGAIIGTLIGLLLSFTSLSPLIIGGTVGAIYVVPLIAAFITILLYPIPYERHSGLTLKETACLAGLFIGSVAAGVGLVACGLTPIIKVDSLSTTVSSLLAMGATIPVLLIATAIGVAIVIELAKQAKEYISGKIMQAEKEPVTDTHEEPGSKMEEAKEEKTARNKQAVRECSKNSPQPG
>NC_012416.1|WP_167494748.1|305328_305469_+|hypothetical-protein
MNLVNFGDILFLVFNKLKYVLDNFSERSNQAKIGKLDKIILSLKLV
>NC_012416.1|WP_012673122.1|305478_306576_+|AAA-family-ATPase
MKKIEISELLKRISICLLCVATIISIAFLFAYMHTMLLSKGYELAAHYVSEAMPCVLLVVFFFIAWFIYDQIFSKLKEVELPISIELANSDDKRITFADAIIDDSLRQRLQMICCDQMTEEMRKLFGNKSINSLRGYILYGPPGNGKTLIARAIAGESNMNFISISGPELIGVYIGHGAHAVRELFKIAKKYSPCIVFIDEIDAVAQKRSTANNSAYHCRESLTQLLTEIDGFKSRKDIIVIGATNLIGGIDPALIRPGRLGQKVYVPNPNIEVRQKILALYMRGTKTDEKLSLQDIADKTEGYSGAELEQLVNEAKISAGAQRRLIVSEEDFSYALHRLSPEQERDRIRLVSNVKTPTEVSYSI

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Crispr_ID: NC_012416_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_3

316495-316593

Orphan

Consensus_repeat	Method
AGAATTGCGATCTATAATCATAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_3

>merge|NC_012416|3|316495-316593|CRISPRCasFinder
AGAATTGCGATCTATAATCATAAGGCTTAAAGCGGACTTACAATCAAAAAATAGCTCGTTAAAAAAGGAAAATAGAGAATTGCAATCTATAATCATAAG

>NC_012416|3|3|316495-316593|CRISPRCasFinder
AGAATTGCGATCTATAATCATAAG	GCTTAAAGCGGACTTACAATCAAAAAATAGCTCGTTAAAAAAGGAAAATAG
AGAATTGCAATCTATAATCATAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_012673122.1\|305478_306576_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|179699
NC_012416.1\|WP_012673126.1\|321581_322676_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_012416.1\|WP_012673130.1\|331960_333391_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_012416.1\|WP_012673127.1\|322778_323981_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NC_012416.1\|WP_007549284.1\|312377_313781_-\|malonyl-CoA-decarboxylase	unknown	unknown	gnl\|CDD\|368376
NC_012416.1\|WP_007549291.1\|314768_315146_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007550935.1\|307790_308165_-\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NC_012416.1\|WP_012673123.1\|306816_307815_+\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	unknown	unknown	gnl\|CDD\|169719
NC_012416.1\|WP_007548562.1\|308552_309935_-\|IS66-like-element-ISWen3-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_012416.1\|WP_167494748.1\|305328_305469_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673129.1\|329415_331215_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236375
NC_012416.1\|WP_012673124.1\|319262_320435_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NC_012416.1\|WP_007548775.1\|323973_325779_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_012416.1\|WP_007549283.1\|310501_312298_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_012416.1\|WP_006280514.1\|315397_315931_+\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|273682
NC_012416.1\|WP_012673121.1\|304560_305145_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007548772.1\|326654_329444_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980
NC_012416.1\|WP_012673131.1\|333541_334255_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NC_012416.1\|WP_012673125.1\|320518_321463_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673128.1\|325762_326368_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_012673122.1\|305478_306576_+\|AAA-family-ATPase	gnl\|CDD\|179699	PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional.	1.63727e-71
NC_012416.1\|WP_012673126.1\|321581_322676_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_012416.1\|WP_012673130.1\|331960_333391_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_012416.1\|WP_012673127.1\|322778_323981_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.06491e-08
NC_012416.1\|WP_007549284.1\|312377_313781_-\|malonyl-CoA-decarboxylase	gnl\|CDD\|368376	pfam05292, MCD, Malonyl-CoA decarboxylase C-terminal domain. This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidized. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK).	2.08191e-142
NC_012416.1\|WP_007550935.1\|307790_308165_-\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	1.56955e-08
NC_012416.1\|WP_012673123.1\|306816_307815_+\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	gnl\|CDD\|169719	PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.	0
NC_012416.1\|WP_007548562.1\|308552_309935_-\|IS66-like-element-ISWen3-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.24793e-36
NC_012416.1\|WP_012673129.1\|329415_331215_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236375	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NC_012416.1\|WP_012673124.1\|319262_320435_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	1.64339e-70
NC_012416.1\|WP_007548775.1\|323973_325779_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.99687e-18
NC_012416.1\|WP_007549283.1\|310501_312298_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_012416.1\|WP_006280514.1\|315397_315931_+\|HK97-family-phage-prohead-protease	gnl\|CDD\|273682	TIGR01543, Putative_prohead_protease, phage prohead protease, HK97 family. This model describes the prohead protease of HK97 and related phage. It is generally encoded next to the gene for the capsid protein that it processes, and in some cases may be fused to it. This family does not show similarity to the prohead protease of phage T4 (see pfam03420). [Mobile and extrachromosomal element functions, Prophage functions, Protein fate, Other].	2.22961e-35
NC_012416.1\|WP_007548772.1\|326654_329444_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	2.07096e-14
NC_012416.1\|WP_012673131.1\|333541_334255_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.00327473
NC_012416.1\|WP_012673128.1\|325762_326368_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	4.60099e-106

>NC_012416.1|WP_006280514.1|315397_315931_+|HK97-family-phage-prohead-protease
MNKKFLYSPLSIKSIGENGVFSGYASVFNIVDKQNDLILPGAFKENLNRNKIKLLWQHNPDEPIGSIIDIYENDVGLYITAHLLLGIQKAEEVYLMLKTGAINGLSIGYIPIEYDVDHKSGARVLKQVELWEVSLVTFPANLAAQVINVKNQNNEQEVLARAIEKANAVLADMYISA
>NC_012416.1|WP_007549291.1|314768_315146_+|hypothetical-protein
MIPFIVGCITSFVSLMAINAIKGNYYNGPGSLTCIPVFHANMSNFSDFTTDRINTFASFIIGTIAYKAAQNISTLVRDVSSLLHNRLEVQKNESEIARYKKIQENVISILSEVKVGSNLSRDINC
>NC_012416.1|WP_007549284.1|312377_313781_-|malonyl-CoA-decarboxylase
MTKESLVKTDIVKVEDKKAVRSFFKILGGVADAVRSWIGNISPDLSNSRDIDSLVLKMNECLNPKGGEVSARKNAVSLGNLYLSLSEKGKIKFLQTLAEKFNPNKAEIDEKIKEYKKNQDPELNYKFEQDLIKILESPRSKILKQFISLPEGLKFIVDMRSDVLKLKNQHRSLNPLENELKNILYTWVDVDLLDLRQITWDSPASLLEKLIKYEAVHKISSWGDLKNRLDSDRLCFAFFHYKIPNEPLIFVEVALVDKIADSIQHLLDESVPSNDPSNASTAIFYSISNTQAGLSGISLGNFLIKRVVEKLSQEFKSIKTYATLSPIPGFTKWLKNNLNQDVTLLGKLNIKQSSAEILESAEQLKTNVECTNETKQYMLKLCAYYLLKVNNSNGNTYDPVAHFHLSNGASIKQLNWMADTSEKGISQSAGMMVNYLYELPKIDNNHENYMVNKVISCSKKVSSMLKE
>NC_012416.1|WP_007549283.1|310501_312298_-|elongation-factor-4
MNNIRNFAIIAHIDHGKSTLADRLIEECNGLEAREMINQILDSMDIERERGITIKAQTVKLNYTANDGNQYCLNLMDTPGHVDFSYEVSRSLAACEGSLLVVDSSQGVEAQTLANVYKAIDNNHEIIVVLNKVDLPAADPEKVKLQVEEVIGIDASESVLISAKTGLGIKDVLEAIVAKLPAPQGDVNAPLQAILVDSWYDTYLGVVILVRVKNGVLKKGMKIVMMSNNATYQIDNIGIFTPKKVMTGELSAGEVGFITASMKEVADCKVGDTITEEKRPCSEALPGFKEVHPVVFCSIFPHKTDDFKYLREALEKLHLNDASFTFEAETSNALGYGFRCGFLGMLHLEVIQERLEREFDLDLTATAPSVIYRVTTRSGEILNIHNPSDMPDPTKIEIVEEPWITATIMVPDQYLGEILSLCEERRGEQEDLSYIGNTTTALLRYKLPLSEVVFDFYDRLKSISKGYASLDWEISSYLVSQIDKLSFLINGEPVDALACIVHKSRAEKRGREICARLKDLIPRQQYKIAIQAAVGGKIIARETINPYRKDVTAKLYGGDVTRRMKLLEKQKKGKKRLHSIGNVNIPQNAFIQALKISD
>NC_012416.1|WP_007548562.1|308552_309935_-|IS66-like-element-ISWen3-family-transposase
MVNLLELCKNLQQKIERLEAKIERLEKENESLKAENKALKIENAELRERLGLSSKNSSIPSSKELYKIKKNKPKSERNIGGQVGHKGSFRANMDADKVVKIELPNTCECGGEIAICEKPYIHQKVDLPEIKPYVVEYQLEHGRCRRCGKRRSSKLPEGVTPDTFGPRVKSIIAAFSGFYKNSKREIASVVNDIFNLNISVGSISNSEHRVASKCKKMYEQIEQEISRSKVLHIDETSHYNKGKLAWCWMFASNTASFVKFTESRGMKVLQNSKFCNRNSLVITDRYAAYNYFADKNRQICWAHLSRDFERLAHSWNIEVKVLGCYLRNVATELFALKKALLKSEIDVLRFVRRARKLRKRTKYYLKEISRLPEAIGASRVAKNVLRSERMMWKFLDDPENIPLTNNHAERQIRHYVVYRKNSYFTQSKRGNTFLERIISLYLTWKQRGLNPFQNLLSIVS
>NC_012416.1|WP_007550935.1|307790_308165_-|TrbC/VirB2-family-protein
MNPRKVFNILFIVLFISFSHVGSAAADTNTDTTAQVICNIIGYVWGIGGPLMTVVIIGAALLAIFGRMPWPALFALGIFCAVFFGAKTIVIKVMGGIGSTGNTSLMDQCGTGDTKKNYFFLKQT
>NC_012416.1|WP_012673123.1|306816_307815_+|pyruvate-dehydrogenase-complex-E1-component-subunit-beta
MATLSVREALCTAIREEMQNDSDVLIMGEEVAEYDGAYKVTKGLLKEFGENRVVDTPITEHGFAGLAVGAAFAGLKPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLGCPIVFRGPNGAAARVAAQHSQCFAAWYSHIPGLKVIAPYFASDCRGLLKAAIRDPNPVIFLENEIAYGHEHEVSDSELSNKDYLLEIGKAAVIREGKDVTITAFSLKLMDALNAADLLSSEGIEAEVIDLRTLRPLDTQTVINSIQKTNRLVSVEEGWPFAGIGAELSAVVMEQGFDYLDAPVVRVTGKDIPLPYAANLEKKALPQVEDIVEAVHQVCFRKK
>NC_012416.1|WP_012673122.1|305478_306576_+|AAA-family-ATPase
MKKIEISELLKRISICLLCVATIISIAFLFAYMHTMLLSKGYELAAHYVSEAMPCVLLVVFFFIAWFIYDQIFSKLKEVELPISIELANSDDKRITFADAIIDDSLRQRLQMICCDQMTEEMRKLFGNKSINSLRGYILYGPPGNGKTLIARAIAGESNMNFISISGPELIGVYIGHGAHAVRELFKIAKKYSPCIVFIDEIDAVAQKRSTANNSAYHCRESLTQLLTEIDGFKSRKDIIVIGATNLIGGIDPALIRPGRLGQKVYVPNPNIEVRQKILALYMRGTKTDEKLSLQDIADKTEGYSGAELEQLVNEAKISAGAQRRLIVSEEDFSYALHRLSPEQERDRIRLVSNVKTPTEVSYSI
>NC_012416.1|WP_167494748.1|305328_305469_+|hypothetical-protein
MNLVNFGDILFLVFNKLKYVLDNFSERSNQAKIGKLDKIILSLKLV
>NC_012416.1|WP_012673121.1|304560_305145_+|hypothetical-protein
MVGVIYLAMLGVAAIIGAIIGTLIGLLLSFTSLSPLIIGGTVGAIYVVPLIAAFITILLYPIPYERHSGLTLKETACLAGLFIGSVAAGVGLVACGLTPIIKVDSLSTTVSSLLAMGATIPVLLIATAIGVAIVIELAKQAKEYISGKIMQAEKEPVTDTHEEPGSKMEEAKEEKTARNKQAVRECSKNSPQPG
>NC_012416.1|WP_012673124.1|319262_320435_-|CCA-tRNA-nucleotidyltransferase
MQVDQETSLIIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPNQTIKALKLRNIKTIPTGLNHGTITAILNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKVRRLNFIGNAEDRIKEDYLRILRAFRFHAKICVGDLSDEILNVCKKHSHMIQNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIPKEVKCEILSSSLLFGTDALVKLALLLRTTKNDRLSLGEYVSKFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCDLVKICGVESGENVDEYISFANTFNIPKFPLSGDDLISIGHQPGKSLGRNLELLKQHWEDSSYTLTKEELVLYAKSLF
>NC_012416.1|WP_012673125.1|320518_321463_-|hypothetical-protein
MAEPRKRKLPSDFHDVEVGIKRPRISGQEITLLNSNPYPDNFYVGQAIGNGSCFFDSFRQSLEQQTGEQVTAEKLRNDCREFAQKNPPKWFTDAIANGYDNNGQHRSETVDDYTANIMRNDRWGDPDVEGRILCEKYKVKLHVIENQTVDNQDLFLHELIDNSGSKSAGEYNKVNYDDSSVLHVINKGHAHFEPLLDRNKSLAKQEQEETKLKQEQEQEDCLLAKKLQLDEILEYCNLSKDISERAEVEKRFDELLAENADGKICDVVEQCVSDIKQHIQRSEKQKSLSPSCSMEEAKIERLSHQQQQQQIPAQ
>NC_012416.1|WP_012673126.1|321581_322676_+|redox-regulated-ATPase-YchF
MSFNCGIVGLPNIGKSTLFNALTESSAAEAANYPFCTIEPNIGKISIKDQRLKQIAAIAGSEKIIYNQLEVVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHLLRCFTDDDISHVHSKIDPISDAEVVEMELILADIDSIEKRLPQLEKKAKQGDKELKRQLELMQEVLATLKLGKPARSLENIDEDEMKSLQLLTTKPVMYVCNVEDTNVITGNELSKKVERMAEENKSKFYCISAKLEADIANLDSEEEKQSFLSEFGLQESGLDGVARIMYEVLSMITFFTVGPKEARAWPVKIGSTADKAAGVIHTDFEKGFIKAETISFADYIKYGSESACKDAGKIRFEGRDYIMQDGDIMHFRFNV
>NC_012416.1|WP_012673127.1|322778_323981_+|hypothetical-protein
MKNILYFILLAVVFGSLSLFAVEQFEEKKIESVHKNENVGVRKQDSTNQKDELKSNVDAKQTQEAESKRLDDTTDKEKLQHNENKASVVEKTTSEGERIDKGLPNDQLEGSTDKFAQNLPNVVNKEVNKDLKPEPLPLSADLNENTANPQKNLQADQKIDIKDNELSKSDASQLLEGKKEKVENQSEEKKVKETNSNSKDRNRVKPITKKDEEEQSEKKSLQKWTKLNREPIKEWGHKDIQSKSIYKRQYDSLNEHLPTTVFIDDYSKQFFYCIKKNNLTCLRGVISKLEKIGLTIQEILRFRNKLGDTPLIYSVKQGEVDIVRFLLLQGADLRVVNNNFQSPIDIAIERKQVKIINAIAEMMPHLLEDRKIDNKESSAMYDWAVKTKENNELQCDKQDD
>NC_012416.1|WP_007548775.1|323973_325779_+|pentapeptide-repeat-containing-protein
MIRFLILILVGHLCYGNETNDEKNQISDFLNALHDVKYVSYSKKDFAEFLVQCHKEGVPEDFKKGFGSNLNGANFNQLYLSKSVFDGVSLIGADFSNTDLSDVSFIDVDLRGANFSNANLHGIKIKGTNLSFTKFVSANLTDIVFDQSNVSYADFISSDLKKVSMHNVIGLHTNFSNVKMNFSNLSNSNVSHVNFSDSEINDTVMQKNNLNNASFFGVDAYKLKIQFSSLKNANIYGAELKESDFTGSNLSDACLNSSIIIDSNFDETNLSNTQISYVNDDNSSFVQSILNGSKIKHAYVSEANLHDADLSNIDFSFSELHQVNVSNADIRHGKFHNTKVANSNMNGSFFDHSLFTSAKIEDSDLSTTSMYKIKIQDSQVYNSTLSRHNIDSSEIENSTFFNLLADNSSWSNLKVTNSNFIESDFRSSLLHANAFRKTSFFLSNLSNSTISDMSFLSSSIYKSSVVDAHLTGCKFDNSILIDNQGQEKLTGSENAITSIKDLQEKISQGEKFNVNYSYFEFKDMNLENADFSNSTLSRAKFVNVNLNKANFEKTDLRYTVFDNSSLIGTNLSNSNLEGSSFLNSDPKSTMLKNAKKNDRKK
>NC_012416.1|WP_012673128.1|325762_326368_+|guanylate-kinase
MTVKSEGVLLVLSSPSGAGKTTISAKLLERSTNLVRSVSMTTRKPRPGEINGKDYFFVTEEKFHELCKAGQMLEYAKVFENFYGIPRNFIEQNLSNGISVLLSIDWQGAFHLFKLMRKKVVSVFILPPSMEELRLRLQKRNSDDASEIERRLAEAQKEISKRDKYDYVIINDDIDKSVEEISSILNKERLKKLKEKPSLED
>NC_012416.1|WP_007548772.1|326654_329444_+|ankyrin-repeat-domain-containing-protein
MGIDITALTTNADKLGECIDKNKKQEQDRKDEQLYGIIERKVKKEEHKREKPRGQDGTLKKCKRLFEKDASPEVLTKLEESLREQEKYYRYYVQCFLPVLDKAIERSKKISNETKKQVISKITDNSRYCFTHNRRDSETESGYGSDVGDDHEVNGTTDNDALLLKAIKNGNNRKFRKYLKDCTDISSIKDEKGNNILHFIASLEKKQKCKFLGTLIKTVTKEDLAQLINSENQTPFQVALINKVTKEKHESNTIRSNDNTLKFLTKLLEHGASSDNLELSTEELQNLKEEQKTYYRNFLEKLAEQGKKSKLKPEIRINTEAKIKEIIPHTINTPDSNDNYLLHPVIKNSDKKLFKELLEKGADISLKDTDGNNALHLIVKPETKQKLKLLNILLETGQKEQFIKAVNDKKEGQTPLHQILQRIQEKSENRSLKKFEKTKRYETLKLLLKNGADITVQDKDGKNALHYIALLKGEQKVACLKLTLGKDEFSKAINAVNGKEQTPLHQVLQRIQEKSKEPSLKNKIKNVVKKEFKDTGRYKTLELFLQNGADITVQDKDGKNALHYIALLKGEQKVTCLELISNKDDAVNTTNKEGQTPLHQILQRIQEKSENRSLKKFEKTKRYETLELLLKNGADITVQDKDEKNALHHIALLKGEQKVTCLELILNSVEKEKFSKAANATNEKERTPLQVALITKTTKDKHNLVNPKSRDNTIKFCVKLLQNGVDPKQLILPERLWSKEYYKTIKGIEKSMGRALIPDDMRTELKCNFGRKLKARDIVKYINNVACKAVTTLVFAALACAAIFSASQGIITIATASSIIAVIGVCYLIYLNLENIYEGFGKIKGKFTEEKQLTLQDNAPKNDTQCNNSVKDIENKSNDLEEQEVQKSPNQSEHTESPPDTKMSAISIYELVEKLCRDSVTSKPSSLAL
>NC_012416.1|WP_012673129.1|329415_331215_-|succinate-dehydrogenase-flavoprotein-subunit
MDKSAYEIIEHEYDVVVVGAGGAGLRATLGMAATNFSVACISKIFPTRSHTVAAQGGISAALGNIGEDDWRWHAYDTIKGSDWLGDQDAIEYMCKNAAKAVIELENFGVPFSRTEDGKIYQRSFGGMTTHFGKGKSAQRTCAAADKTGHAILHTLYQQCLKFNAEFFVEYFVIDLIMDSETCCGVLAWSLCDGTLHRFRAHRVVLATGGYGRVYFSATSAHTCTGDGNGMVVRAGLPLEDMEFVQFHPTGIYGSGCLMTEGCRGEGGYLVNSQGEKFMERYAPKAKDLASRDVVSRAITIEIREGRGVGPKKDYMYLTIAHLDPEVIKLRLPGISETARTFAGVDVTKDPIPVIPTVHYNMGGIPTNYYGEVITLKQGKEEVVDGLFAIGEAACVSVHGANRLGSNSLLDLVVFGRAAALRAKEKLKSGTPHKKLHSDCTDWIVDRFNKMRFASGGLKVAKIRSEMQNTMQKYASVFRVAEVLEEGKKAIKKVAKMMPDISLEDHSMMWNSDLVEALELANMIPQAVITMECAANREESRGAHAREDFPERDDKNWMKHTIAWLEEKKGQINVKIDYKKVAEKTLSGEIDFIAPEKRVY
>NC_012416.1|WP_012673130.1|331960_333391_-|glutamate--tRNA-ligase
MLDVVTRFAPSPTGFLHIGGARTALFNWLYAKHHGGRFLLRIEDTDRKRSTKEAIDAIIEGLRWLGVSYDGEIVYQSKRIERHKEVANLLVEKGRAYHCYCPEDEVAEKKIKAREEGKIYKHKCTTKPPSCHPSSRHWDPEENMWSRAGMTSGVRSVIRFKVPDSQEIVIDDKIYGQIKVNSNQLDDIVILRSDNTPTYIFAVVIDDHDAGITDIIRGSDHLTNTFKHLLIYQALDFDIPRFAHVPLIHGEDGNKLSKRHGATSVCDYEKMGILPKAMRNYLLRLGWSHGNDEIISDEQAIEWFNLESIGRSPARLDFKKLEHLNNHYISNMSNEDILTLMLRENTLTDKKKGYLLQGLTELKKRANYLTELLDLAKFYIQDPPLDLSEEAEQIVKSNLDIIKLLASFLSEIGDENWNKGFLSSQIKECAKLHDMKISDVYHSLRAPITGVMDAPGIIDIMVILGKDECIRRLQAI
>NC_012416.1|WP_012673131.1|333541_334255_+|hypothetical-protein
MYELVDIAKLLSDNEANINWHYTGPFDKTKQRIRGDNLLHLAAKTGKVDKFLSIFKKSVESNVHLLEYNKDHENPFHIAAEVGILPSVVKGIFKHLESEKTNPNCDPKKLENVKNYVKEALCNRCALDQSKKTPLDWVSKTVKKEIKEIAGIKDSFICNQKFRLCLYIVGAIACIAALCLSLYFLFLVSQSLALASMAGIISGGAAYLSGKVFSEIHDLHDVSTPVETFSNEDLARI

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Crispr_ID: NC_012416_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_4

346171-346275

Orphan

Consensus_repeat	Method
AGCATCAAAAAATTCTTCTTCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_4

>merge|NC_012416|4|346171-346275|CRISPRCasFinder
AGCATCAAAAAATTCTTCTTCCTCTTCTGAAGTAGCAAGACCTAAATTATTCCCTTCTTCTACATTAGAAACAGCTTCCATAGCATCAAAAAACTCTTCTTCCTC

>NC_012416|4|4|346171-346275|CRISPRCasFinder
AGCATCAAAAAATTCTTCTTCCTC	TTCTGAAGTAGCAAGACCTAAATTATTCCCTTCTTCTACATTAGAAACAGCTTCCAT
AGCATCAAAAAACTCTTCTTCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_012673137.1\|353939_354920_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|274473
NC_012416.1\|WP_006279888.1\|355328_356252_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_012416.1\|WP_012673134.1\|337352_338951_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133049
NC_012416.1\|WP_006280272.1\|340211_340937_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NC_012416.1\|WP_007548626.1\|349918_351385_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NC_012416.1\|WP_012673132.1\|334318_336394_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|227111
NC_012416.1\|WP_012673133.1\|336342_337371_-\|COX15/CtaA-family-protein	unknown	unknown	gnl\|CDD\|367131
NC_012416.1\|WP_012673131.1\|333541_334255_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NC_012416.1\|WP_007548816.1\|360016_360640_+\|heme-ABC-exporter-ATP-binding-protein-CcmA	unknown	unknown	gnl\|CDD\|237421
NC_012416.1\|WP_006014985.1\|339924_340152_-\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|181027
NC_012416.1\|WP_010962578.1\|351524_352844_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NC_012416.1\|WP_010082641.1\|353455_353884_-\|protoporphyrinogen-oxidase-HemJ	unknown	unknown	gnl\|CDD\|367596
NC_012416.1\|WP_006280273.1\|338956_339433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223783
NC_012416.1\|WP_007548633.1\|339441_339921_-\|ATP-synthase-F0-subunit-B	unknown	unknown	gnl\|CDD\|184061
NC_012416.1\|WP_012673135.1\|341542_343882_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_012416.1\|WP_010962582.1\|341166_341430_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280528.1\|356259_357522_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_012416.1\|WP_007548818.1\|357583_359386_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_012416.1\|WP_007548628.1\|346430_349742_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NC_012416.1\|WP_006280467.1\|361666_362962_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|224671

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_012673137.1\|353939_354920_+\|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl\|CDD\|274473	TIGR03182, Pyruvate_dehydrogenase_E1_component_subunit_alpha, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	0
NC_012416.1\|WP_006279888.1\|355328_356252_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.32175e-83
NC_012416.1\|WP_012673134.1\|337352_338951_-\|glycosyltransferase	gnl\|CDD\|133049	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of glucan.	8.7431e-156
NC_012416.1\|WP_006280272.1\|340211_340937_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.83736e-54
NC_012416.1\|WP_007548626.1\|349918_351385_+\|MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	4.74554e-90
NC_012416.1\|WP_012673132.1\|334318_336394_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_012416.1\|WP_012673133.1\|336342_337371_-\|COX15/CtaA-family-protein	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	1.44442e-107
NC_012416.1\|WP_012673131.1\|333541_334255_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.00327473
NC_012416.1\|WP_007548816.1\|360016_360640_+\|heme-ABC-exporter-ATP-binding-protein-CcmA	gnl\|CDD\|237421	PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional.	1.78036e-108
NC_012416.1\|WP_006014985.1\|339924_340152_-\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|181027	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.	7.57609e-21
NC_012416.1\|WP_010962578.1\|351524_352844_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_012416.1\|WP_010082641.1\|353455_353884_-\|protoporphyrinogen-oxidase-HemJ	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	8.23334e-58
NC_012416.1\|WP_006280273.1\|338956_339433_-\|hypothetical-protein	gnl\|CDD\|223783	COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion].	3.22858e-07
NC_012416.1\|WP_007548633.1\|339441_339921_-\|ATP-synthase-F0-subunit-B	gnl\|CDD\|184061	PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional.	2.8753e-14
NC_012416.1\|WP_012673135.1\|341542_343882_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_012416.1\|WP_006280528.1\|356259_357522_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.61029e-84
NC_012416.1\|WP_007548818.1\|357583_359386_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_012416.1\|WP_007548628.1\|346430_349742_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_012416.1\|WP_006280467.1\|361666_362962_+\|sodium:proton-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	5.63226e-40

>NC_012416.1|WP_012673135.1|341542_343882_+|phenylalanine--tRNA-ligase-subunit-beta
MKFTLSWLLEYLETNASLEEITDKLTHIGLEVEDVIDNTKLAGFIVAEVLEVIQHPNADKLKLCKVDDGSKILQIVCGANNVREGMKTVLASLGSTLPESDFTIKPTKIRGVLSEGMLCSASELALVQEESEGIIELSDDYKVGDKFFNCDPVIDINVTPNRGDCLGIYGIARDLAATGIGTLKTLSIPQLTSFINSPIDVEVTDGESFISGIYIANVKNQESPKWLKDRLESIGMRSISAIVDITNYIMISFSRPMHAYDAKKIEGELTVRKANDGEKFAGLNGKEYLLNKDISVIAGDKNIHGIAGIIGGKCSECTLETTDIFLESAWFDPISITKSSRQLGISTDASYRFARSVDPGFTFDGLNLAAKMILDLCGGETSSVVSAGSLDSVDTKVSFDYQDVNKFGSVSVSPDEVLDILTKLGFSIDKKTEGNWNVQVPSWRPDVTIPADLIEEVTRIYGYDKIKEEPLPNNVEEVDSTYDNLRILMTNRGFHEVLTWSFMSESTAEKFGYSNKLFIIDNPFNNNFNIMRPSIMPNLLQVTADNIAHGISDLAIFEIGPIYDGEARSKHVLSGIRTGNNLPRNHYNTDRKVDVFDAKADCIAALEFFNVNCDNLTIEKAEKEHYHPGKSGTLSFKNKVAGYFGELHPNILDLFDIKQKVVGFEVILENIENLPVSRKKFIDYKYQSVKRDFAFIVNKDVEVGNIINVIKKSSELITEVLIFDVYHGNNIEPNKMSIALSVTFCSPIHTLTEKEIQKESSAIVNLVCENTGGTLRTYR
>NC_012416.1|WP_010962582.1|341166_341430_+|hypothetical-protein
MNEIDFINTNHPLNLEQEFGNGYIESVDCFLDEDTRDYYIGLNNAIIHFFFDGNIDEDAWDYESLKFFLEIDLKGDIEKILSLRKKI
>NC_012416.1|WP_006280272.1|340211_340937_-|F0F1-ATP-synthase-subunit-A
MALNPLEQFKVYTVIELPRLFGYDVSFTNSSLFMMISVILVILFLLFGIKKGAVIPGYLQAAVEYVYDFVISIIENNTGSKGLQHIPLIFTVFIFILSCNLVGVLPYSFTVTSHVIVTFALSMVVFIYITIVGFKERGVEFLRILLPKGTPSWLAPIIIIIKLFAYLVRPVSLSIRLAANMIAGHTIIKVIAGFIVNMNIFFTPAPFLFIIALIGFEVFVAILQAYIFTILTCVYLSDAVK
>NC_012416.1|WP_006014985.1|339924_340152_-|F0F1-ATP-synthase-subunit-C
MDLVALKFIAIGLAVFGMLGAGLGIANIFSAMLNGIARNPESEGKMKSYVYIGAAMVEIMGLLAFVLAMLLIFAA
>NC_012416.1|WP_007548633.1|339441_339921_-|ATP-synthase-F0-subunit-B
MPQLDVSTFFSQVFWFLIFFSSLFFVVSCLFLPKLDKIISTRSKEVLGSFNSSVHLLRLTEEQIAKYNAALNQARIQAKKIIDDALAQVEEMRANVKNILEEEDKKMSKLIEEKVAEFKSEYTDQLKQMATSIALIYYTKLTNSEIEEEFIADLVSKEF
>NC_012416.1|WP_006280273.1|338956_339433_-|hypothetical-protein
MSTSLIIGLAFLVGFVLSYKLLKKVIKNALNNKRNKSKFSSEETEKFRKDMLEYYKKSSEKYKKLDAEVNEMMNEALDKANSIIKHNRQQLDQTLDDNAHSNLKKVTDQVEKALGDLQANTASIAADAVKKIMHERKDDKRSSEVISSFSRDLNKKLH
>NC_012416.1|WP_012673134.1|337352_338951_-|glycosyltransferase
MPILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNNTTFFMVEDTSRDINRWVEAHYGIDYVLIKVDSEQILNLLNSHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTSILTLTEKYTYFALMLIFIIGCSSYLFKFIATIFNLCETSNQKVDYSKLNEEDFPIYTILLPAFKESAVIEQLIESIESLDYPKSKLDVKLQVESDDQETLAAIEKYTLPQYFEVIKVPHSLPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKGDDKLACVQAKLNYYNCDCNFLTKSFSLEYMNWFQYLLPGFQKMNMPMPLGGSSNHFSVKILRKMFFWDAYSVTEDADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWIKGYMQTYIVHLKNIKSLYKHTGFKGILLLNLFVGSAAFLFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVKQQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTQHGLWKQNL
>NC_012416.1|WP_012673133.1|336342_337371_-|COX15/CtaA-family-protein
MEAKPVAIWLFLCSVMVILMVGIGGFTRLSKAGLSITEWKPITGTLPPLSEQDWLQEKLKYEATPEYKALNYGISMEEFRAIYLIEYIHRLVARLTGLVFVLPFIYFILRRKISKKVVIKLFVALLFGALQAFAGWYMVKSGLVAKPHVSHYRLALHLLLALVIFALLSYQFFDYQIRPQQTKLKVSGNTIYYARMILVLIVIQIIFGAFVAGLNAGLIYNTFPLMDGQIVPEDLFFLQPIWLNIFENRATVQFIHRALALLILTLVVILTVKNASIKPVYIMLLSVVIQIILGVITLLLHIPIAIAIAHQVFSFILFGSSLYFLCYLRKQTTSPICTFFPS
>NC_012416.1|WP_012673132.1|334318_336394_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MTEKKYSKILIANRGEIACRIIRTAHKMGISCVCIYSDADVNSVHVRQADESRYIGPSPSCLSYLNIEKICEVAVETGAEAVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMGKISDAAHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVSLAKQVGYFSAGTVEFVVDKDQNFYFLEVNTRLQVEHPVTEFITGIDIVEEMIRTSCGEKLRFNQDDIKLTGSAIESRICAEDPSKKFFPSSGRIKYYDKPGENDYVRIDDGVAAGSEISMFYDSMIAKVITYGKDRVEAISRMQKALSECYIEGVTNNIEFLESIFHHPNFIAAKLHTRFIPDHYPSGFHGDFVTEEYIKIFIFTALYVHLENEERYHHKAVNETSQVSFQCVTLESSKKEGAPVSATRMAGDRARDLFIVNINDNEYSVNAKYQDNILITVYNHNKYSVIGKWKSSYRLLYITINDDTNIALKIERQGSKYFIRHAGMKAECCILKPHVAELSKLMLNNETEGISADAVKSPISGLLVKLHVNVGDQVEIGQPLFVVEAMKMENIICAEAAMVIKNIPVQEGKNVQIGDVVCFLK
>NC_012416.1|WP_012673131.1|333541_334255_+|hypothetical-protein
MYELVDIAKLLSDNEANINWHYTGPFDKTKQRIRGDNLLHLAAKTGKVDKFLSIFKKSVESNVHLLEYNKDHENPFHIAAEVGILPSVVKGIFKHLESEKTNPNCDPKKLENVKNYVKEALCNRCALDQSKKTPLDWVSKTVKKEIKEIAGIKDSFICNQKFRLCLYIVGAIACIAALCLSLYFLFLVSQSLALASMAGIISGGAAYLSGKVFSEIHDLHDVSTPVETFSNEDLARI
>NC_012416.1|WP_007548628.1|346430_349742_-|isoleucine--tRNA-ligase
MKSKHYPDTVSNPDFSSLEKEIIKFWQENKVFEQSVEERSKDNCFVFYDGPPFANGLPHYGHLLTGFIKDAFARYQTMLQKRVERRFGWDCHGLPAEMGAEKELGISGRTEIEKFGIEKFNNHCRTSVMKFSSEWEKYVNRQARWVDFHNDYKTMDKSFMESVMWAFKQLYDKGLVYESVRVVPYSWACETPLSNFETRLDNAYREKTSKAVTVAFELLENPQQFKNIEQKCKLLAWTTTPWTLPSNLALAIGKDIKYCAVSVHSLAAREAGIQEGNKCLHAEVTSNQPNEIYIFAESYLEKFISHSEQNNIPYENCNIKLKANDLAGLSYKPLFDYFKDTKNAFRVFIADYVTGEDGTGVVHTAPGFGEEDFYLCQSHDIPVICPIDNSGKFTAEVSDLAGVHVFDANDTVIKKLKGQGSWFKTEQYIHNYPHCWRTDTPLIYRTMPSWYVAVTKFKSRMVELNKRVNWIPNHIRDGQFGKWLEGAHDWSISRNRFWGTPIPVWKSDDARYPRVDVYGSIEELERDFNVKIDDLHRPFIDTLTRPNPDDPTGKSVMRRVPDVFDCWFESGSMPFAQIHYPFENKEWFESADFITEYIAQTRGWFYTLFVLSTALFDREPFKNCICHGVVLDVKGQKLSKRLNNYADPMEVFDRYGSDALRFLMLSGSIVCGGNLLLDKEGNSIRDVLKNVIKPIWNSYHFFTMYANADGIKAEVCKDYQSTIDRYMISKCFEAVEGIQASMNNYNSQEACKILMNFFEVLNNWYIRRSRERFWKSDLDQDKTDAYNVLYTVFYYILRAAAPLLPLITENIWQGLKYEETSVHLANFPQLEKFDSQLIAKMDLVREICNSALSIRNTFNIRIRQPLGSMIIYHQSSCSFLEGEPFSVIPEFSPVIQVADTGIQCAADSNEYQEMIKDEVNVKKLELVNRLEDIASLELKLSFPLLGKRIPDKIKKLVQYVKEGKWKQVENEQVFLGNESENYIIEKGEYELLLKANSGYSAVFDNNKGVVILNTELNDELILEGLARDVVRLIQETRKQADFHISDRIRVIIKTEDEKIKEAINTWFEYIKEQTLALSLDINTEIGTNFYSKEYQDLSVSIER
>NC_012416.1|WP_007548626.1|349918_351385_+|MFS-transporter
MDQKTDKFPQFLKMLCFVEMWERFSYYGMRALLVLFLTSHLGFTDERAFTIYSLFAATGYAIPILGGFLADKLMGFRNMVLLGGIVMIAGHACMSLVKFEPGLLYLGLSLIAIGTGMFKGNVTNLLSSCYGKDDPERSRGFTLFYVGVNIGAILASISCGYVAHLFGWHYGFGLAGIGMSIGLIFFLKFQNLLGDSGLSPYPELMNKRILGIKIFGIVLIGSFLSSSIIAKMLIHSEFFTNMLIFIGITALGIFIYIISKLSAEQRRKLVALSILVVFFLCFFALEMQLGSLVNLFTERNVINNVLGITIPASVSQAINPLSIIIFGFLFGTYMKFKQKYATSMFTLGLLTMAMCFFTLYIGCLNSNIEGKVEYLYLIIAISFMGLGELCIAPLVQEQATTLAPKNLRGVVMGIVMLSLAFSNLAGVAISKFMSVPSVNGKINYLESLEIYKEGFLKVGIFNLMLVIVFLFFFNFIHKVVTNSSCTKN
>NC_012416.1|WP_010962578.1|351524_352844_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MKGLYIKTYGCQMNVYDSVLMENVIKPLGFNVVSDAGKADLVILNTCHIREKAAEKLYSELGKIHSLRKEMTIVVAGCVAQAEGEEVFRRAPFVDIVVGPQSIATLPELIVKASRSKGHVINTDFPEVAKFDKLPDECYGNSQGSSAFLAIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREALKLVANGANEINLLGQNVNAYHGECEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMHESLYLAHAEEPKLMPFVHLPVQSGSNKILHAMNRKHTAEEYLEIIDRFRKLKPEIEFSSDFIVGFPGETEKDFEETMKLVEKVRYAQAYSFKYSPRPGTPGAERKDQVPEEVKTERLLRLQKLISKQQLEFNQSMVGKTIPVLFSDKKGKHQNQIIGKSPYMQSVCIDDSEDKYRDKIVNVKVLEARQSSLLGCAFH
>NC_012416.1|WP_010082641.1|353455_353884_-|protoporphyrinogen-oxidase-HemJ
MNYYHWLEAFHVISVIMWMAGMLYLPRLYVYHATVKPGSENDSLLQTMEKRLLRYIINPAMLFSLGLGITLMVIREAYREGWFHVKAFAILLMLIIHMLLAKYRKNFAMGSNKKSHIYFRVLNEAVTVLIIVIVIMVVVKPF
>NC_012416.1|WP_012673137.1|353939_354920_+|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MKAENFTKEQIIGFYRKMLLIRRFEEKAGQLYGMGLIGGFCHLSIGQEAVAVGTQAASKLGDAFITSYRDHGLMLACDSDPNVVMAELTGKETGCSKGKGGSMHVFDVEKKFFGGHGIVGAQVPIGTGIAFANKYKKKDNVVFTYFGDGAANQGQVYESFNMASLWELPVVYIIENNEYAMGTSVQRSTLVTELYKRGESFGIPGKQVDGMDFFSVYEATSEAAEHTRSGKGPILLEMKTYRYRGHSMSDPATYRLKEEVEDMKQNHDPISTLKKYMTDNKMASEEECKIIDKEIRDLVKKSEDFAKNSKEPSVDELYTDVYKFVS
>NC_012416.1|WP_006279888.1|355328_356252_+|RluA-family-pseudouridine-synthase
MLQSIKTILIEDDNVRLDRYIRRIFPDLKQSVIEKSLRKGLIKVDDCKAKSSDRVNSGQTITLKHLNYIENANSDRKYNEKLVNLLRENILYEDEYILAINKPAGVIVQGGVKVKISMSDLLDQIREGETFKIVHRLDRDTSGVIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKDSGTIDYPLVKKYVSGQEKVVVDENSPQNATTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAHINCPILGDGKYGGKKAFIDGIANKIHLHSHSLSLKLPNNKEITITAPITKHIEKSIEALFFD
>NC_012416.1|WP_006280528.1|356259_357522_-|MFS-transporter
MNNIQKAILSGMICNMIVWYELTLFGVLTDTIINVFFPSEDHYLSTLKFLGVFAIGFAFRPIGAVIFGYMGDKYGRRKTLLTSVILISISSTIMGIIPGYKEIGLLSPVLLVFCRIVQGITAGGETSINTAFTIEHSKDKKNLGFLGSMKPFSGALGTLLCITMIFICKRVTGENYEIWGWKLLFYFCFFLGTIGFLTRYILKESLAYKTNKYANNLAHSPLLELVRNYKRPLIISINLGIAQNAIVYAAIMFYNISIKELVILSISVKDLMRIVIQVVFAASAVLFAILSDKVGRKRVMIPVLIMLSLIGTCVLPLLSSVNHYVVIITYLLITIPVGASFGIYGSVICELFPTKVRCTGVSLANNISAGIFGGLSPYICMWLIEKTETKLAAGIYLTACALISLISVLQIKAKDRKVDW
>NC_012416.1|WP_007548818.1|357583_359386_-|aspartate--tRNA-ligase
MNCYKTHTCNELRKNDVEKEVTLSGWLYRKRDHGNLIFVDLRDFYGITQLVFNNDKDFFDEISNLKLESVITVTGIVEARTEDTVNSSISTGEIEVIVNNLRVESEVEFHFDEEIAKEERSILASITGEQEYPENMRFKYRFLDLRREKVRNNIILRSQIIAELRKLMIERGFLEIQTPILTASSPEGARDYLVPSRLNPGKFYALPQAPQIFKQLLMVSGFDKYFQIAPCFRDEDARADRSPGEFYQLDLEMSFVTQEDIFQIIESTLYRVFAKFSRKSVDKDFPRITYKEAMLKYGSDKPDLRNPLLISDVTEIFRDSGFNIFKSNIERGMVVRAIPAPKTAEEPRSFFDKKIEHAQKEFGAKGLGYITFDKDGTAKGPIAKFLDENRLNHIREATNIEPGDSVFFASDKENEAANIAGKVRTLLGSELSLIDDNIFKFCWIIDFPYFVYDDKSKKIDFFHNPFSMPHGGLKDLEDKNPLDILAYQYDLVCNGIELSSGAIRNNKLDIMYKAFAIAGYSRGEVDTRFGALVRAFRFGVPPHGGIAPGVDRIVMLLADEPNIREVICFPMNQQGEDVLMGAPSKVEDKHLRELSLKVIE
>NC_012416.1|WP_007548816.1|360016_360640_+|heme-ABC-exporter-ATP-binding-protein-CcmA
MLECENLSCTRNNKVLFKNLSFKAELKSKILITGPNGSGKTSLIRSLSGLLPPVSGNIRHCGKDIYDDPKSYISSMVYIGHKNACKDSLTVAQNVEFWAGIRNTRELIVAAICCLQLQPVLNIRYGELSAGWKRRVALARLLISNANVWLIDEPFCNLDSATCELVLNLISIRSEQNGIVIITGHSSTEQLCDFTTIDIRNFNRLLV
>NC_012416.1|WP_006280467.1|361666_362962_+|sodium:proton-antiporter
MTAFVPLIIFLILYLGSGAYFSFIGTDNPLHQVSPVICLLPALFFAVSRGTNKIQHNIDTVIKGMGDKNTLTMCLIFLFSGAFSAVTQSIGSADTVANLILNFLPARLLLPGVFLASAFISTAIGTSMGVVALMVPIAVNLAKSGAFGLEIGTATVVGGAVFGDNLSMISDTTIASVSSQEASAKDKLKMNSKVALIASIITLIYLAVASNSTKIISISNLDYYSIIKIIPYISLIIMGLLEVATLVTITINIIIAGVLGITFFDYAIIQFPHDVYDGFKKVNEIVIFALFIGGLSHIMYKQGQKALHKLIDESNITKTKAEFVIAGIASMFTTLVANNTIAILLSGGIAKRLAQKHSIAPHRSAYLLDVFACATKGILPYGSQLLLAGSIASVSPISLLTQVYYCFILAAVTIGEIIINSRKEKHCAAAT

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Crispr_ID: NC_012416_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_5

374548-374658

Orphan

Consensus_repeat	Method
GAGATACCGCGGCGGTATGACGGTTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_5

>merge|NC_012416|5|374548-374658|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGGTGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGCGG

>NC_012416|5|5|374548-374658|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGG	TGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTA
GAGATACCGCGGCGGTATGACGGTTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_094745766.1\|378151_378984_+\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_012416.1\|WP_094745767.1\|387243_388076_+\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_012416.1\|WP_006280510.1\|367168_367795_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_012416.1\|WP_173862902.1\|375439_375583_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007549294.1\|372169_372541_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NC_012416.1\|WP_006280223.1\|375620_377168_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_012416.1\|WP_007549255.1\|381868_383041_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NC_012416.1\|WP_006279326.1\|366960_367152_+\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|370944
NC_012416.1\|WP_006280511.1\|367784_368480_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|376506
NC_012416.1\|WP_173862877.1\|369320_370052_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NC_012416.1\|WP_007549203.1\|368755_369313_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_012416.1\|WP_012673141.1\|372621_374433_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NC_012416.1\|WP_084741728.1\|383079_386148_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|380042
NC_012416.1\|WP_012673143.1\|380036_380915_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_012416.1\|WP_012673139.1\|366385_366892_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NC_012416.1\|WP_010962971.1\|374739_375183_+\|PD-(D/E)XK-nuclease-family-transposase	unknown	unknown	gnl\|CDD\|372314
NC_012416.1\|WP_006280574.1\|379158_380046_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NC_012416.1\|WP_007551350.1\|377164_377974_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_012416.1\|WP_012673140.1\|370915_371764_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NC_012416.1\|WP_007549205.1\|370074_370935_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_094745766.1\|378151_378984_+\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.12138e-30
NC_012416.1\|WP_094745767.1\|387243_388076_+\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.25412e-30
NC_012416.1\|WP_006280510.1\|367168_367795_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	4.6681e-39
NC_012416.1\|WP_007551350.1\|377164_377974_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.09713e-24
NC_012416.1\|WP_007549294.1\|372169_372541_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	1.02028e-33
NC_012416.1\|WP_006280223.1\|375620_377168_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.19694e-141
NC_012416.1\|WP_007549255.1\|381868_383041_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NC_012416.1\|WP_006279326.1\|366960_367152_+\|zinc-finger-domain-containing-protein	gnl\|CDD\|370944	pfam10276, zf-CHCC, Zinc-finger domain. This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.	2.05346e-07
NC_012416.1\|WP_006280511.1\|367784_368480_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	9.22807e-112
NC_012416.1\|WP_173862877.1\|369320_370052_-\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	1.50276e-133
NC_012416.1\|WP_007549203.1\|368755_369313_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.18131e-84
NC_012416.1\|WP_012673141.1\|372621_374433_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NC_012416.1\|WP_084741728.1\|383079_386148_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|380042	pfam17874, TPR_MalT, MalT-like TPR region. This entry contains a series of TPR repeats.	1.37336e-17
NC_012416.1\|WP_012673143.1\|380036_380915_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	5.34007e-147
NC_012416.1\|WP_012673139.1\|366385_366892_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	2.24251e-84
NC_012416.1\|WP_010962971.1\|374739_375183_+\|PD-(D/E)XK-nuclease-family-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	3.98008e-17
NC_012416.1\|WP_006280574.1\|379158_380046_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	9.42306e-142
NC_012416.1\|WP_012673140.1\|370915_371764_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	6.52377e-138
NC_012416.1\|WP_007549205.1\|370074_370935_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	2.35218e-117

>NC_012416.1|WP_012673141.1|372621_374433_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIFGVVSSGDSVIPTLLTGLQKLEYRGYDSSGIAIINNEGKIEVKKSEGKVERLCEVVDDSKMSHSTVGIAHTRWATHGVPGLKNAHPIRTNNVVVAHNGIIENYNLLKKGLEERGMPFHTDTDTEIIPNMLTLYLDEGLSPIDSLFKCLNNLHGSFALVLLFAEYPDALFVAKRNLPLAIGYNCNTVFAASDSNALSAFVERISHLEDDDIAVIKSSGVSIYNNGTQVKRSIENSSPSDFLISKNGYPSFMLKEIFEQPCALNKTINQFYKQYKEVNKKLFSELNHITIVGCGSSYFAGLIAKYWLESVAQVRVYLEISSEFRYSNVKLEEGSIGLFISQSGETADTIEALRYAKSQKQTIISITNTFSSSIEKISDIVLHTLAGPEIGVASTKTFSAQLATLACFVVELGKIKGVLGGERIKQLSNAINSIPKHVEHVLNVMKIQHISGSILEHNNVILIGRGSSYGVAMEGALKIKELSYINTIGIAAGEMKHGSIALIDSTVLVIAIIPYDSLFFKTLSNIQEIIARKGKVIAFSDKQGAPFLREVCADVVQLPDADNFISPIIYSVAMQFLAYFTAAKKGLDVDCPRNLAKSVTVE
>NC_012416.1|WP_007549294.1|372169_372541_+|preprotein-translocase-subunit-YajC
MLISEVFAADATSNTSSIGASFASFTPLILIFVVFYFLIIRPQQKKLKEHRRMIDQIKRGDTVITSGGIIGEVNKVDEANAQFIIEIAPKVEIKVLKSAISEVLSKETQKVAAKPIKKVKSKE
>NC_012416.1|WP_012673140.1|370915_371764_-|30S-ribosomal-protein-S2
MTNLPKVTVRDLAESGVHFGHKISRWNAKIAPYIYGVHQENRIHIIDLRKTLPLLQVAMKVLYDVAFQGGRILFVGTKFQAFDIIASEAIRCGQYYVNHRWLGGMLTNWGTVSSSIKTLMQYEKILNDEDSILTKKELGNIEKKKQKLDKALGGIREMGAIPDILFIIDTNKEHIAVKEAKKLGIPIVAILDTNSDPDGITYLIPGNDDSRKSIELYCKLATDSILAGIESSLAKSGVKIDDIRGDEFIQEKEDGIVQTKRRRSKVYKEEEREVVTNEDESR
>NC_012416.1|WP_007549205.1|370074_370935_-|elongation-factor-Ts
MKMNPDDIRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVAMCLTENCGVLIELNCETDFVARNEKFIELVLNLASIAHQERCTSVDELKNAKYESIGTVQEAIMNGTSVLGEKLELSKLCYLEAKDGVIAGYVHGDVCGLGKIGALIALQSPGDKAKLQEIGKQIAMHIVAMKPEALSIDDLDQMKLKNERSIIEEQVRSLNKPEEVAKKIVDGRMAKYYEEVVLLEQKFIKDDKMKVSDFIKSSEVSAVKLSNYKLLVLGGAN
>NC_012416.1|WP_173862877.1|369320_370052_-|UMP-kinase
MNEKSEIKYSRVLFKISGEALMGSQSFGYDMGIISQLCKDIADINRLGVQVCIVVGGGNIFRGTSASLSGCERASSDYIGMLATIINALILQNFLEKNLIASRVLSAIPMATVCEPYIRRKAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAVEMNCDVILKGTQVNGVYSADPKKNEDAVMYDRLSYTDLLTRDLKVMDASAISLARENSIPIIVFSLKGEKIVNIIKGQGTYTIVSDCKH
>NC_012416.1|WP_007549203.1|368755_369313_-|ribosome-recycling-factor
MLNEIKAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKIWDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQFAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDNNIKKIDGELSIKEKDILNH
>NC_012416.1|WP_006280511.1|367784_368480_-|di-trans,poly-cis-decaprenylcistransferase
MLNQESLPKHLAIIMDGNGRWANNQGRVKIDGYKKGSEVAYDIAKYCTDLTIPYLTLYAFSMENWLRPKNETDCLFDLFYSVLTNEDKVNFICNCNIKLNFIGNLSLLPSKILDQIKKAEEMTHKNDGLLLTVAVSYGAKQEITQAISNIIKENIAYVSEEEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKKYGR
>NC_012416.1|WP_006280510.1|367168_367795_-|phosphatidate-cytidylyltransferase
MVDNNFIVRMLSSIVILFIFSFATYFSDLSFYLLIFSIAVLSSFEWYNLTQGNKILYVFALLLIALPSASLIYLYNLPQGKYALVWFVLTIWGIDITAYLFGKNFGGAKICPILSPGKTWTGLLGAILAGVVCTIFGSIFFGLFSIFYSPIIGLAIAILAQLGDFTESLVKRAYGVKDSGNMIPGHGGVLDRMDSFIFTAPLIAIYIS
>NC_012416.1|WP_006279326.1|366960_367152_+|zinc-finger-domain-containing-protein
MSKVRVNNRKVCCHGDENDEGSGHPLIYLDMGEEEEIACPYCEKTFVHDCTVEAVGELTRDEL
>NC_012416.1|WP_012673139.1|366385_366892_+|pantetheine-phosphate-adenylyltransferase
MNINDKIGIYPGTFDPITFGHLDIIKRACKLVDKLIIGVAENVNKHTAFDTKLRTSMAENEIKGLGIDADVISFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSGFVKEIARLGEDVSKFVSKGVQNELINLNRIKNGE
>NC_012416.1|WP_010962971.1|374739_375183_+|PD-(D/E)XK-nuclease-family-transposase
MALSKFLDPKLDLTFKKIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMVRPESLRSYCLKGEEFIQKETERILKLIEPDVLPSESTHQCELGNQLVPSDADNEPPLDKEDAQS
>NC_012416.1|WP_173862902.1|375439_375583_+|hypothetical-protein
MAGNPQGMLMDVQVKDNGESECHFVTKWIEFVTLIRVKTSRLPFGPS
>NC_012416.1|WP_006280223.1|375620_377168_+|group-II-intron-reverse-transcriptase/maturase
MITSTTVSAPTNNSEAWNQLPWKKCQKVVMRLQRRIVKAVQQGRWGKVKTLQHLLTRSFSGKALAVKRVTENQGKNTAGVDRQIWSTCNTKFQGIKLLKQRGYKPSPLKRIYISKSNGKRRPLGIPTIKDRAMQALYLFALEPIAETISDRHSYGFRPKRSCADATVACHLLLASRNQLQWILEGDIKGCFDNINHEWLMKHIPMEKKILHSWLKAGFLESKTLYSTTAGTPQGSIISPILANLALNGLEKSLESQFGKLGSKRRSKIRSGVNVIRYADDFIISGITREVLENEVKPLVSSFLQERGLILSEEKTKITSITTGFDFLGCNVRRYNKKLIIKPSKESIKKLLNKARTLIKANIANTQAVLIKLLNSLLRGWGNYYSHVCAKRAFNKIDHEIMCALWKWAKKRHPRKGLRWIKNRYFKVMKQRQWVFAAPICKNKPKEIRYLRLLRLIDIPIRRHVKIRADANPLDLKWKKYFDERVKQTKMLASSFSREGSLLLVSPLRMMFSEES
>NC_012416.1|WP_007551350.1|377164_377974_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVREKKDLDKGLKRSVGKPACCVSKGGSSSNTTSLPNQLTRDKGFEKRAQLYAAKAYSRQADKSGKYIDLKKVFFIAISNCNLFPDKLDYISSHTIRDEKTNEHDLKDFQFVFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGY
>NC_012416.1|WP_094745766.1|378151_378984_+|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWARIEKHFRVSYKKGGRPPKYNKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA
>NC_012416.1|WP_006280574.1|379158_380046_-|UDP-N-acetylmuramate-dehydrogenase
MLISLPKVRGIYRYDILMSKATWLNVGGRADILFKPRDIEDLTCLIKNTELPVSVIGATSNIIVRDSGIRGITVKLGKEFAYIKSKGNNSIVAGGAVLLSNLAHFAGNQQISGLEFLVGIPGTVGGGIEMNAGAYGSDIASVVQSIKAVNLEDGNLYEFSSEEMGYFYRGHSLKGNWIFVEAEFKGVNSEYELILQRLKEVIERKNKSQPIRGKTAGCIFKNPKNYRAWELIDKSGCLGLNIGGARISKKHCNFLLNYDNATASDLENLGNKVKDAVKDKFNVELEWEIRVLGSY
>NC_012416.1|WP_012673143.1|380036_380915_-|hydroxymethylbilane-synthase
MLVKIGTRGSKLAVVQALEAKQKLLDSFPNLSIEIVKIKTSGDKYANANLAEIGGKGLFIKEIEAELLENNIDMAVHSLKDVPAFFSWGLTIPCVLERLSPCDAFISHKHNSLESLPQQATIATSAIRRKVQLLNFRPDLNIVPLRGNVTTRLQNQSFDGIILAEAGLIRLEKHHLITEVLPPKVMLSAVGQGAICIQCRRNDVKIIDLLEKINNNMSFIGVKSERSFMKTVNGSCFTPLAALAEYVSENMLYLRCMLADGKNIYFTERTSFIEDAEKMGMDAGLELKSKCL
>NC_012416.1|WP_007549255.1|381868_383041_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSKIIEIRAPKTLGGESVTEGIVKIKKGIGEAVKVDDLIFEIETDKTALELTAEASGQITEFLVKEDDVISPDQLLAKLSVGEVKEEAKKEDKSESAAKKDAPSARKIMEENAISAESVKGTGMGGRITKADVIGHMNKAEQPAIKQYELPKSVVNGEQREERVKMSKIRQVIAARLKASQNTAAILTTFNEIDMKNVMDLRTKYKDAFEKKYGIKLGFMSFFIKAAVQALKEIPEINAEISGDEIIYKHYYDIGVAVGTDKGLVVPVIRSADQMSFAEIELTLVALGKKAREGKLQVSEMEGATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRPVAVGNAVEIRPMMYIALSYDHRIVDGKGAVTFLVKIKNYIEDPNRLVLEV
>NC_012416.1|WP_084741728.1|383079_386148_-|tetratricopeptide-repeat-protein
MAFFLLLSIRYLCSGNWYDDEIEDFLLRIRFVVNQPNHSKLDDIIKKEIGNIYKISGKKDIDMVFDFACGKVEKWWEQQGSEVSYLTRKDDYFKEAIEHLYSLKPRENLFERWNIPPKIAGRNFIERKYLNEKILDYLKTENEPVILTALQGLGGVGKTQSVLDFIQKHGEKYKGICWLNAKDEDQLISEYVKLGRALNIIYGEDKIPAAQQACYVRNWLEDSKREGWLLIYDNVSNYEVISKLRPTKGGKIIVTSRNTEWPQGSIGVDVFTPPESELYVKKILGQVSESDRPNIGILAEKLGRLPLALAQACAYIKENKMTISRYLEIYAERKLYLLSHKTLPKDSNHEPVFITWDITMDAICNESNLASRLLIACAYLGNDIPKDLLRIFPEIVENNSEEKPFEEVLGILLRYSMLVSNEQSGSVSIHCLVQDVIRLKSEESGETKENIETVFQLLQESFPYGSDKLEDYAKKRQLLLHLEAFLSHIDDWLEKNPLEKQTIEKYYLMDLLIWMDNGYYDLGNPRRQKELLERALAIKEKHYESDHCEVAITLVNLGNAYYALDYPQKAKELFEQALAIKEKHYGPDHFEIATVLGNLGTAYRALGNPQKAKELLEWALPILKKHYGSDHFEVAKLLTNLGIAYGALGDPQRARELLERALAIQEKYYGFDHFEFAITLANLGTVYGALGDPQKAKELLEQALVIDKEHYGPDHCKVAITLTNLGNIYRALGDCQKARELLERALVIKEKHYESDHCEVAITLVNLGNAYYALDYPQKAKELFERALAIKEKHYGFGHFQVAIILGSLGTAYYALGDPQKAKELFEQALAIKEKHYESGHFQVAKLLTNLGAAYRALGNLQKAKELLERALVIDKEHYGPDHCEVAITLTNLGATYRALGNPQRAKELLEQALTIQEKHYGPDHCEVAKILINLGITCYALGDPQKAQVSFTRALPIFKKHYGPDHPEVAKLLVNLSDAYGALGNHKKQKELFARASSIFTKHYGPDHPEVVKLLAELDDV
>NC_012416.1|WP_094745767.1|387243_388076_+|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWARIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKITLNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA

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Crispr_ID: NC_012416_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_6

418918-419367

Orphan

Consensus_repeat	Method
GNGNGANNANAANNTCGTCATCCCGCTNCNTGTTAGCGGNATCT	CRT

5 spacers

The CRISPR arrays of NC_012416_6

>merge|NC_012416|6|418918-419367|CRT
TAGCTAAACGACAACCGTCATCCCGCTGCTTGTTAGCGGAATCTCTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCAGCGTGACGATAAGCTCGTCATCCCGCTACGTGTTAGCGGGATCTCTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGGGATCTCTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCAGCGTGACGATAAGCTCGTCATCCCGCTACGTGTTAGCGGGATCTATGTTGAGAGATACCGCGAATGAATCGCGGTATGACGGTGTAGATGATGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGTGGCGGCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGGAATCT

>NC_012416|6|1|418918-419367|CRT
TAGCTAAACGACAACCGTCATCCCGCTGCTTGTTAGCGGAATCT	CTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCA
GCGTGACGATAAGCTCGTCATCCCGCTACGTGTTAGCGGGATCT	CTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCG
GCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGGGATCT	CTTGTTAGCGCCGCGGCGGTATGACGGTTCGTGGCA
GCGTGACGATAAGCTCGTCATCCCGCTACGTGTTAGCGGGATCT	ATGTTGAGAGATACCGCGAATGAATCGCGGTATGACGGTGTAGAT
GATGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCT	AGAGATACCGCGGCGGTATGACGGTTCGTGGCG
GCGTGACGATAAGCTCGTCATCCCGCTGCTTGTTAGCGGAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_006280246.1\|406126_407305_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|179270
NC_012416.1\|WP_007548332.1\|421831_422854_-\|IS110-like-element-ISWen2-family-transposase	unknown	unknown	gnl\|CDD\|376773
NC_012416.1\|WP_007552114.1\|428095_428296_-\|Fe-S-cluster-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|377339
NC_012416.1\|WP_007549123.1\|416625_418335_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131259
NC_012416.1\|WP_010962676.1\|407580_408753_+\|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl\|CDD\|180385
NC_012416.1\|WP_012673148.1\|410331_412038_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NC_012416.1\|WP_007549348.1\|423390_424131_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|273806
NC_012416.1\|WP_007549347.1\|424325_425441_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|274232
NC_012416.1\|WP_173862902.1\|420176_420320_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007549122.1\|419476_419920_+\|PD-(D/E)XK-nuclease-family-transposase	unknown	unknown	gnl\|CDD\|372314
NC_012416.1\|WP_010082072.1\|410008_410173_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_012416.1\|WP_006279619.1\|427063_427378_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NC_012416.1\|WP_006280986.1\|412953_413547_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280551.1\|425437_426154_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NC_012416.1\|WP_095866567.1\|409428_409770_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NC_012416.1\|WP_012673150.1\|426207_427071_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NC_012416.1\|WP_007549125.1\|414444_416424_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NC_012416.1\|WP_012673149.1\|412171_412867_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272913
NC_012416.1\|WP_010082513.1\|427415_427757_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NC_012416.1\|WP_153801317.1\|409854_410016_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_006280246.1\|406126_407305_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|179270	PRK01278, argD, acetylornithine transaminase protein; Provisional.	0
NC_012416.1\|WP_007548332.1\|421831_422854_-\|IS110-like-element-ISWen2-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	8.62177e-27
NC_012416.1\|WP_007552114.1\|428095_428296_-\|Fe-S-cluster-assembly-protein-IscX	gnl\|CDD\|377339	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This family of proteins is likely to be involved in the assembly of iron-sulphur clusters. It may function as an adaptor protein. In Escherichia coli IscX forms part of the isc operon, which encodes genes involved in iron-sulphur cluster assembly. Its structure is entirely alpha helical, and it contains a modified wing-helix structure, usually found in DNA-binding proteins. It binds to Fe2+ and Fe3+ ions and to the cysteine desulfurase IscS, the same surface of the protein is involved in both binding to iron and to IscS.	2.19336e-27
NC_012416.1\|WP_007549123.1\|416625_418335_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NC_012416.1\|WP_010962676.1\|407580_408753_+\|NADH-quinone-oxidoreductase-subunit-D	gnl\|CDD\|180385	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D.	0
NC_012416.1\|WP_012673148.1\|410331_412038_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NC_012416.1\|WP_007549348.1\|423390_424131_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	4.56017e-23
NC_012416.1\|WP_007549347.1\|424325_425441_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	7.14453e-84
NC_012416.1\|WP_007549122.1\|419476_419920_+\|PD-(D/E)XK-nuclease-family-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.15298e-16
NC_012416.1\|WP_010082072.1\|410008_410173_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NC_012416.1\|WP_006279619.1\|427063_427378_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	2.42165e-26
NC_012416.1\|WP_006280551.1\|425437_426154_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	9.52039e-116
NC_012416.1\|WP_095866567.1\|409428_409770_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	1.333e-13
NC_012416.1\|WP_012673150.1\|426207_427071_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NC_012416.1\|WP_007549125.1\|414444_416424_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	1.23376e-17
NC_012416.1\|WP_012673149.1\|412171_412867_-\|hypothetical-protein	gnl\|CDD\|272913	TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization].	0.00325975
NC_012416.1\|WP_010082513.1\|427415_427757_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.26214e-13
NC_012416.1\|WP_153801317.1\|409854_410016_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.54397e-08

>NC_012416.1|WP_007549123.1|416625_418335_-|ATP-binding-cassette-domain-containing-protein
MRSNIRQLFYYIKPNLSYFVIAFIAVLFSALTILLFGRGLSNIIDSGTEHDFTTKLLVAILIVLAISLTAFTRLYFIGIGSEKVIARIRYDLYSSITDLQPSFFENTGVQDVISALITDTSVLQSIINSSLLTILRNFVILIGSVAMLLYTNIQLTAYAAAIIPILLIIVTSLGKKVRSHARFAQDKLSELASFSEENFRSIVTIKSFVLEENEKTRFKEYLNSVSKSYVKLVLLRAILVTLVITCVIGSLVVLLFFGIKEVLSNNITIGELSSFVVYSALAAGAINNLSDNISDLQRGLGIVERLFEFKNMKSSIVDPDDPIKICSVQKGISFNGVTFFYESQSDKPALNNVSFSIEAGQAVSIVGPSGSGKSTILKLLLRFHDPNKGSITIDGHNIKSIALNDLRSLFGLVPQDHMIFSCSIIENILYGKPGAEYEEVRQAAIGAYAMEFIDKLPDKFDTFVGKRGLKLSEGQKQRIIIARAILKNPQVLILDEATSALDYKSENLVQKALSELMQNRTTIVITHRLSTALKTDKIIVINHGKVEEVGTHDSLISKDGLYAKLAKIQ
>NC_012416.1|WP_007549125.1|414444_416424_-|hypothetical-protein
MLKHNYSDKINNRYSYTNKFSYSDEGVDETIKDKITTEDQVVTDDKVVTDDEVTTEDQVTDPRDQIEKEKKDDEFTRETLEECKNRAQKAEDDAKKAVKRAEDDAARAIKRAKDDAEEEIGRAKDDAKQARERAEEDAKAKKAAEEVAKQAQGEAEEAKEQFTKCEENAERIKDDAKQAIERAEEDAKAKKAAEEVAKQAQGEAEEAKEQFTKCEENAERIKDDAKQAIERAKDDAKAKAAEAVKQAHGEAKEAKEQFAKCEKDAERIKDDAKQAIERAKDDAKAKADLAIKQAQDEIEKVKAEAKQAKADAGKAKEEAEGIKEAFVQCEKKVEKAKEEVVKCKIGMAKAEVEWYKKEAEECKKEKGIGTGKPDTGKKGDETGTGKPDTGEKGDETGTNKPDTDEKEDETGKASVITSQEITLDCSQAENCGAHASWYTAYNKIGHQGFNTSDLLKELYPEMYSNPKIATYIEKGIEGYYGVVNFKFAFTELFDSAHYFSNMSCKKCMDNPQEIACQDDEIKSFCYPAGYHNNKEYNKSFFMRESCPDLIRESDRTIVAKAKQIAPLILVNTLGQMIDKEGNNTQILYSSLKPYLKANGKIKDCGVDKKCEDFAKIMKKVAWDSDKEVLLKTVFDSTEKTNPYYYDNEDSLVSVDTNFI
>NC_012416.1|WP_006280986.1|412953_413547_-|hypothetical-protein
MTYNFSSYPRMDSCTPVRTACITDPRYHHNFDPRCHNRFDSRHDGLELNIQLPEFDLNIPPCPACPDTVCPPAPACPPAPACPACPPCPQVKPEPESKTIVDFSKLAITVNPITDDILDIETKEPTGYKFKECAKTIQNAKNNLQVIDGKLVGSCENNSECDKCVEVINSSILDAKSAEAFFSTHNMSVLEGTVHII
>NC_012416.1|WP_012673149.1|412171_412867_-|hypothetical-protein
MPTNTFSCPNQKNANHVRILPLDTCYVSDMLKINLFTKLDDCKVNKSKLIYDKCGKDLKCKIDDKTMNELKKCFKFEIDDKTMNELKENIKNELEKGLKFEIDDKTMNELKENIKNELEKSLKFEIGDKTKNELKENIKNELEKGLKCEIDDKTKNELKENIKNELEKSLKFEIDDKTMNELKENIKNELKKEKEPDDVKEPDGVKEPDAGNDGYSEGMAFSYHDYDNVLI
>NC_012416.1|WP_012673148.1|410331_412038_-|arginine--tRNA-ligase
MNIFKRASSLILSKLNELKQRGIINTDTTNFIVEPPSNRAHGDIYTNVAMVLAKHEKKNPIEIAEVLAKEFELFDEVAKVEIAGPGFINIHLKIKVWHGILKQINELKTEFGTLDIGNNQAINVEFVSANPTGPLHIGHARGAVFGDVLANLLKKVGYKVTKEYYINDAGAQIDTLIKSVYLRYKEALGEKISIEKGLYPGEYLKPIGEGLAKKYGKEFLKKQDNQIIREYTLSFILELIKEDMNLLGVNHDVFTSEYELQKSGKIEESIKILSDKGLVYEGYLEKPKGKESENWTSRKEMLFRSTKFGDDVDRALKKDGGSWTYFASDIAYHFDKISRGFNNMIVELGSDHGGYVKRLKAVVSALSDDQAKIEVKLHNIVNFFENGKPVKMSKRSGNFLTARDVVEEVGRDITRFIMLTRKNDMVLDFDFAKVKEQSKDNPIFYVQYAHARAHSLMRNAPKELPTADPSLLRTGGELFLIKTLAKWPDVVEIAARLCEPHRITFYLLEVAEAFHVLWGYGKSDLNMRFILEDNLNLTAARMFLVQALAHVIASGLSIFNIEPLKEMS
>NC_012416.1|WP_010082072.1|410008_410173_+|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NC_012416.1|WP_153801317.1|409854_410016_+|hypothetical-protein
MSSSINKQLVMDSLLMDVNKRKPAKNLLLHSDQGSQYTSQGYQYLLAVKNIDE
>NC_012416.1|WP_095866567.1|409428_409770_+|IS3-family-transposase
MVNTIKCRNYVGFSASGYYKWTTRKISSRESANKELLADIQKIYQASKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNGIQAILRRKFKIKKQQTDSSSQYIRPKLYCRSTK
>NC_012416.1|WP_010962676.1|407580_408753_+|NADH-quinone-oxidoreductase-subunit-D
MPDLKTMMLNFGPQHPAAHGVLRLVLEMDGEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKMPEGQIKTEDRKISPPSRAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR
>NC_012416.1|WP_006280246.1|406126_407305_-|aspartate-aminotransferase-family-protein
MDHVVNAYNRLDTPIVRGEGAYLFDKDGKKYLDFAAGISTTSLGHCHPYITDKLKEQSSSLWHCSNIFTIPEQERLAERLTTLTFADKVFFCSSGLEATEAAIKFIRRYFYSKGQAKRNRIITIEGGFHGRSIAAISAGGNEKSREGFAPLLSGFDKVPRNDIKALEEKINNEIAAVFLEPIQSEGGVYPLDVEYLQKVREITKAQGIILCFDEVQCGYGRIGSLFHYQNVGIEPDMLTCAKAMGNGFPVAACLVKDYIAEAITPGTHGSTYGGNPLAMTVGNAVLDIMLKEGFFDHVKRISKYLKEKLLLLAKEFPEMILEVRGEGLLMGIELATLVADKIISRSLDKGLIITRVLNNKVVRVTPPLIIEDEHVNAACNMLYDLFFKIKGI
>NC_012416.1|WP_007549122.1|419476_419920_+|PD-(D/E)XK-nuclease-family-transposase
MALSKFLDPKLDLTFKKIFGTERNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMVRPESLRSYCLKGEEFIQKETERILKLIEPDVLPSESTHQCELGNQLVPSDADNEPPLDKEDAQS
>NC_012416.1|WP_173862902.1|420176_420320_+|hypothetical-protein
MAGNPQGMLMDVQVKDNGESECHFVTKWIEFVTLIRVKTSRLPFGPS
>NC_012416.1|WP_007548332.1|421831_422854_-|IS110-like-element-ISWen2-family-transposase
MINNFLGIDVSKERFDVSLSFISKKGKRETRKRKFKNDDTGFQGLLNFLQKHNVEEVKACMESTGCYSEALAEFLHNAGYFVSVVNPACIRFYAKSKLTRQKNDQTDAEIIADYCQRQEPSRWTPPSPEKKKLKHLYRCSNALKDELTLANNHLEKKERLPKEVANAWEDLAMNIEQKIETIKNSIRELLKQHKELLEDFQLLLTIPGIGEETAIAILAEIPGIKAFINARQLAAYAGTIPQNITSGSSVHAKPRLSKTGSRTLRKAMYFPAIAAKKHNPIIMASCERLKEKGKHAMAIVGAAMRKLLHIVFGVLSSKKAFDPDHIKNYRAKRLTEGLVL
>NC_012416.1|WP_007549348.1|423390_424131_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVREKKDLDKGLKRSVGKPACCVSKGGSSSNTTSLPNQLTRDKGFEKRAQLYAAKAYSRQADKSGKYVDLKKIFFIAISNCTLFPDKLDYISSHTIRDEKTNEHDLKDFQFIFIELPKFPKSRAEQLESVVDRWLFFFKYADETTDEDLRKIAEKSPIIKLAYDELDKFHWNEKDLVAYEERIMDLRKEEAILEYRLDLAKEEGRKEREIEVAKNLLKAGVSFNIIAQTTGLSMSEIKELQN
>NC_012416.1|WP_007549347.1|424325_425441_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MNIKLWYRTLDYYLILPVFFLLTISFILVYSASPVIAQRLSLPQDYFIRRHTIYIVLSLITLVTFSFLNTRTILNLSFAGFILFTILIAIAIILGIEVKGAKRWLHIVKISVQPSEFVRPFFSVVIASILASEMRFKMHISIIIFLLVFVLLLLQPDFSMSMLLTYSFIGQMFIACIPFLYFLCIIGMAATGTTIAYLCLPHIKQRIYNFVFFTQRDNFQVTKSLEAFKRGQLTGVGPGEGSVKASLPDCHTDFVFSVLAEEFGLITCLATLMLFGIISARLLYIAYRENELFNLLVILGISIQFITQFIINIGVTLSVFPTTGITLPLLSYGGSSLLSSSIALGIMLSFSRNQAIALKFRERVMLGRYMD
>NC_012416.1|WP_006280551.1|425437_426154_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSTIKIEKKSQLVKEVFDSVASRYDTMNDIMSLGMHRLWKDRMVNSVHFTKNSKVLDVAGGTGDIAIRIVRKEPSAKVTVCDINQNMLSRGRDKAINSNQINFDWVCANAESLPFEDSEFDYCTIAFGIRNVSDRKKALNEAHRVLKPHGKFICLEFAPMHYQNEIFTKLYDLYSFKVIPKIGSIVAKDKSSYEYLVKSIREFPTQADFKMEIEEVGFKNVEFHNMSYGIVALHIGTK
>NC_012416.1|WP_012673150.1|426207_427071_-|lipoyl-synthase
MHSKPQWLRAKAPTGEVFNETLNIVKLHNLHTVCEEAACPNIGECWNKRHATVMILGSVCTRACAFCNVATGIPDKLDPHEPENLAKAIKKLNLKHVVITSVDRDDLPDGGANQFIQCIEEIRKITSETTIEILTPDFLNKKGAFEAIAVASPDVYNHNIETVPRLYAKIRPRARYFHSLYLLKMVKQINPKVFTKSGLMVGLGETKEEIFQVMDDLRSAEVDFITIGQYLQPTPKHAKLDRYVTPEEFEHYKYIAYSKGFLVVASSPLTRSSYHAEEDFNRLKACR
>NC_012416.1|WP_006279619.1|427063_427378_-|50S-ribosomal-protein-L28
MSRVCELTNRKKSFGNKVSHSNRKTKRTFLLNLHKVTLTSDILNKKFRFRVATRTLRTIDYKGDLDAFLLNTRTIKLSEKAQKIKRRLKKVLVKQEVELAVSDA
>NC_012416.1|WP_010082513.1|427415_427757_-|DUF721-domain-containing-protein
MLKRSGPKKLKSIIENYALKCMKNKISKNEIRLILNWRNIVGKEIAECTKPKKISYAQNINSGVLHLVVTNGSKALEIQHMISLIIEKITIFFGYKAVYGIKIKQESIDYLTI
>NC_012416.1|WP_007552114.1|428095_428296_-|Fe-S-cluster-assembly-protein-IscX
MKWLDIEDIVEALEEKFPNENIISIRFTELKKKVLSLEEFDDDEKRCNEKILEAIQAAWIEERLTA

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Crispr_ID: NC_012416_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_7

842142-842456

Unclear

Consensus_repeat	Method
CGTCATCCCGCTACGTGTTAGCGG	CRT

4 spacers

cas3

The CRISPR arrays of NC_012416_7

>merge|NC_012416|7|842142-842456|CRT
CGTCATCCCGCTACGTGTTAGCGGGATCTATGCCGAGATACCGCGGCGGTATGACGGTTCGCGGTGGCATGACGATAAGCTCGTCATCCCGCTACGTGTTAGCGGATGAGATACCGCGAATGAATCGCGGTATGACGTAACGACAAATTCGTCATCCCGCTACGTGTTAGCGGGATCTATGCTAAGAGATACCGTGACGGTTCGCGGTGGCATGACGATAACCTCATATCCCGCTACTAGTTAGCGGATGAGATACCGCGAATGAATCGCGGTATGACGTAACGACAAATTCGTCATCCCGCTACGTGTTAGCGG

>NC_012416|7|2|842142-842456|CRT
CGTCATCCCGCTACGTGTTAGCGG	GATCTATGCCGAGATACCGCGGCGGTATGACGGTTCGCGGTGGCATGACGATAAGCT
CGTCATCCCGCTACGTGTTAGCGG	ATGAGATACCGCGAATGAATCGCGGTATGACGTAACGACAAATT
CGTCATCCCGCTACGTGTTAGCGG	GATCTATGCTAAGAGATACCGTGACGGTTCGCGGTGGCATGACGATAACC
TCATATCCCGCTACTAGTTAGCGG	ATGAGATACCGCGAATGAATCGCGGTATGACGTAACGACAAATT
CGTCATCCCGCTACGTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_007549148.1\|839805_840342_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673267.1\|832023_832593_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NC_012416.1\|WP_006280207.1\|832610_833609_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NC_012416.1\|WP_006280205.1\|830984_831962_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_012416.1\|WP_010082469.1\|834547_835075_-\|cytochrome-c-family-protein	unknown	unknown	gnl\|CDD\|226005
NC_012416.1\|WP_007549783.1\|852935_853223_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006279266.1\|830653_830974_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NC_012416.1\|WP_006280400.1\|842575_844072_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235835
NC_012416.1\|WP_012673271.1\|848629_849577_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673269.1\|844789_845584_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280401.1\|844068_844731_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226259
NC_012416.1\|WP_012673268.1\|833784_834546_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_012416.1\|WP_007548562.1\|837844_839227_+\|IS66-like-element-ISWen3-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_012416.1\|WP_006280293.1\|847748_848633_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_012416.1\|WP_007549149.1\|840443_841712_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|237059
NC_012416.1\|WP_012673272.1\|849881_851903_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NC_012416.1\|WP_010082479.1\|847202_847673_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673270.1\|845657_846479_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
NC_012416.1\|WP_007549151.1\|841708_842065_+\|holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|237780
NC_012416.1\|WP_006280292.1\|846496_847084_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_006280400.1\|842575_844072_+\|cation:proton-antiporter	gnl\|CDD\|235835	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_012416.1\|WP_012673267.1\|832023_832593_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	6.2577e-47
NC_012416.1\|WP_006280207.1\|832610_833609_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NC_012416.1\|WP_006280205.1\|830984_831962_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	8.56408e-84
NC_012416.1\|WP_010082469.1\|834547_835075_-\|cytochrome-c-family-protein	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	1.21819e-41
NC_012416.1\|WP_006279266.1\|830653_830974_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	1.65813e-42
NC_012416.1\|WP_007549149.1\|840443_841712_+\|proline--tRNA-ligase	gnl\|CDD\|237059	PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional.	0
NC_012416.1\|WP_012673268.1\|833784_834546_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.51414e-20
NC_012416.1\|WP_007548562.1\|837844_839227_+\|IS66-like-element-ISWen3-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.24793e-36
NC_012416.1\|WP_006280293.1\|847748_848633_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.21039e-100
NC_012416.1\|WP_006280401.1\|844068_844731_-\|hypothetical-protein	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	3.85818e-13
NC_012416.1\|WP_012673272.1\|849881_851903_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_012416.1\|WP_012673270.1\|845657_846479_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	4.76358e-35
NC_012416.1\|WP_007549151.1\|841708_842065_+\|holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|237780	PRK14659, acpS, holo-[acyl-carrier-protein] synthase.	1.67744e-70
NC_012416.1\|WP_006280292.1\|846496_847084_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	1.51842e-58

>NC_012416.1|WP_007549151.1|841708_842065_+|holo-[acyl-carrier-protein]-synthase
MIHGIGTDIVYIPRVSRILQKYGEKFLNRIYTEKEIELSRKYNSQEMRARYFAKRFAAKEAFVKARGSGQGIIMKDIEIYNDVRGKPYLTVSKDFISKIHLSLSDDGDYATAFVVICV
>NC_012416.1|WP_007549149.1|840443_841712_+|proline--tRNA-ligase
MRLSKYYLPTLKEKPAHAKIISHQYSLRAGLIKQIASGIYSWLPLGLLVLKNIEDIIRDEMDKSGAIEVLMPCVQPANLWRESGRYDDYGKEMLRIKDRHEEDMLFGPTHEEVATDLIRDVVKSYKDLPLCLYQIQWKFRDEVRPRYGVMRGREFLMKDAYSFDVDYEGALNSYNLMYKTYIKIFKRMGLTPIGVRADTGPIGGNLSHEFHILANTGESTLYYDNKFSELLESEDVESLKSIYAVADDMHDPETCPISQEQLNVSKGIEIGHIFYFGDKYSKPMKASVTSQDGKNVNIHMGSYGIGVSRLVGAIIEAFHDDKGIIWPESVAPFRIGLINLQTKVTEAADKIYKALKSDEVLYDDTEGSVGVKFSRMDLIGLPWQIIVGKKAIDEKIVEVKNRATGEVKEMQIEEAINHFSTK
>NC_012416.1|WP_007549148.1|839805_840342_+|hypothetical-protein
MKAKLESSGGTDKKERPEEFAARIDREQAERKKSDDNDSEWTKRLKERAAVMRFSDSESEHSDSISDSDWTTGESKDTQKEIEQEKEEQTKHTNPPSSKEERSKSSDSGIESRATSPIHPEQKTEESPSSCVDSPQVNNVDPVDNEVQDPPPLSVEDCIAQFGGKALPWQKQFVARRQ
>NC_012416.1|WP_007548562.1|837844_839227_+|IS66-like-element-ISWen3-family-transposase
MVNLLELCKNLQQKIERLEAKIERLEKENESLKAENKALKIENAELRERLGLSSKNSSIPSSKELYKIKKNKPKSERNIGGQVGHKGSFRANMDADKVVKIELPNTCECGGEIAICEKPYIHQKVDLPEIKPYVVEYQLEHGRCRRCGKRRSSKLPEGVTPDTFGPRVKSIIAAFSGFYKNSKREIASVVNDIFNLNISVGSISNSEHRVASKCKKMYEQIEQEISRSKVLHIDETSHYNKGKLAWCWMFASNTASFVKFTESRGMKVLQNSKFCNRNSLVITDRYAAYNYFADKNRQICWAHLSRDFERLAHSWNIEVKVLGCYLRNVATELFALKKALLKSEIDVLRFVRRARKLRKRTKYYLKEISRLPEAIGASRVAKNVLRSERMMWKFLDDPENIPLTNNHAERQIRHYVVYRKNSYFTQSKRGNTFLERIISLYLTWKQRGLNPFQNLLSIVS
>NC_012416.1|WP_010082469.1|834547_835075_-|cytochrome-c-family-protein
MELNKIAASILLSGLIIMIVSNVVDMLYSPEEYKIEHQTIVAAGSNEFQQKIEQVALDIGALMQNASFEKGKSAAKKCIACHSFEKGGMNKVGPNLWNIVGNKKAHLGNSFNYSKAVLERGGKWGYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVSYLHQLSDSPVALPK
>NC_012416.1|WP_012673268.1|833784_834546_-|alpha/beta-hydrolase
MDYCKLFDGNNGHIAYRKLQGKKASVVFFGGFASNMDGTKATAIYKFCQENDVALVLFDYFGHGHSSGNFIDYTISDWQKNCAKVMSELTSDKQIIIGSSMGGWLMLLTALQFPEKIAALIGISSAPDFTEDLIFKQLSGKQKEELDSKGVIDFTSEHCTYKITKNLIEDGRKNLLLNKKTIDINCPVRLLHSINDKDVPYQTSLNLAEKIKSTDVEVHLIKSAEHNMSDNHSLEVLFKTIREFCNQTAFCDF
>NC_012416.1|WP_006280207.1|832610_833609_+|tryptophan--tRNA-ligase
MTSIVFSGIQPSGVLHLGNYLGAIKQWIDLQDKYKSLFCIVDLHAITANKLPASELKSNIFKTAAAYIACGIDTEKSIIFSQSTVSGHAELGWLLGCYTPIGWLNRMTQFKDKAGSDKQKASLGLYSYPVLMAADILLYQTKYVPVGDDQKQHLELARDIASAFNNHYKLDYFIVPEILTLDCTSRIMSLRDGTSKMSKSDPSEHSCINLDDTDDLIVKKIEKAKTDSILGFATLKCRPEISNLINIYSVLSNVNAEKVCEEVNKHDMKHFKKELADLIISVISPIREKMNDLLKDQFHLHEILKKGTKKAAEIATHNIKEIKDIIGFAQYL
>NC_012416.1|WP_012673267.1|832023_832593_+|nucleotide-exchange-factor-GrpE
MSDSSKEKKKKFADMVSRQKGDDQQSDNHKQTDDLNEDLNTLKERAVQLEDHLRRAVADNENVKRIMQKQISDASDYAVTKLARDMIDSCDNLKRVMEILKDGDPVHEGIKVAYQKIINDLKKHGIEEVDPLGELFDSNLHQAVVEREDNEKKPGTIVEVLQTGYTIKNRLLRPAMVILSKKSADCGSD
>NC_012416.1|WP_006280205.1|830984_831962_+|polyprenyl-synthetase-family-protein
MLITNSDKLDDIVSSDLSAMNDFVFKNVNDEDAKLATDIISHLVRSGGKKIRPKLVFIICKMLNYSGENRINVAASVEFIHNATLLHDDVLDESEARHGVKTANKIWGNKSSILVGDLLLTLAFRWLIECGNLNILSILSKASHLLVKGEIKQMTARFDPHTVRENYFDIIGEKTASLFSACCEAASTVSGATNDETERLKNFGFNFGMAFQIVDDMLDYTANQGTSGKQVGKDFFEGKVTLPAIIAYEKGSPAEQKFWEKCFSSARHNFDQALHYINHHNAIQLSMEKARHYINMAQNDISTFSDSFYKTTLINFLNASIERRM
>NC_012416.1|WP_006279266.1|830653_830974_+|30S-ribosomal-protein-S16
MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIEKIGQYDPMLPKDNKNRVVVKADRLKHWLSVGAQATERVLWFIKKGIVTLETEPKKTEKKKVENEKAQGQEA
>NC_012416.1|WP_006280400.1|842575_844072_+|cation:proton-antiporter
MDCVLTSLSLPFSITENYLLITALIPLLSALVIFFTGKWPRVNNSITVTSSVLLFTYTCLCTLYWVYGDHSQFILMDFGNNLHISLKLESTGVIFSLLISFLWILTSIYAICYMQNNYADSNHSSFLCFFSISISCAMFIAFSGDLLTTFVFYELLTISTYPLVTYNSTNESMIAGRYYFGVLFFSSLVLFFPAIGLLYNEFHTLDFVSGGIFKFDTSLITFIAVCFAMLIYGIGKAALMPMHFWLPKAMVAPTPVSALLHAVAVVKSGVFIIIKVILYTFGVDNMQRFVQQNWFTGGWLPYVAGFTIITASLIALKQKELKKLLAYSTISQLSYIILFASIFSELSMRVAIFQLVCHAFAKITLFFIAGAIITRAGEKYIDKIYGIGRSMPISMTAFAIGALSMIGVPPAPTFWGKFLIFQAVFNSGNVILSVFVTLVLIVSTILNALYFLPIIYNAFFLKPSQNYFIKKTPILLVLPPVITAMCTLVIFFSYQVIF
>NC_012416.1|WP_006280401.1|844068_844731_-|hypothetical-protein
MEDKLLESVKNKSYFSKAVEWYCHRYLFCVAERSWMALIVSLLLVCLCLLTLNIYLLFPVKKDLNFVKYMNHTEDEFSAMHKLSFSKKEDEYTSTARYLISKYIEIYESIKTVEPKYQENFIRNNSIHKIYQGFQEKTNNEAGNLSLSKRKIANINVITLSIDRSTKDLVTFAGNATVVFTTEQNKEDTVEISFTLSNIKATLAGIIPFKFIVNGYKYRF
>NC_012416.1|WP_012673269.1|844789_845584_-|hypothetical-protein
MTDNKLTVWQSIEVLTKAILNMQKKLSLIKNIASDQDITLEKGKELLSGIYEANFKLNKTINIATLPKIGYHMLNGELVVRNHITEEEVKIPGDFHYLKVVKSDHDNYKLTFCNFLGNEFFEYKKYDPQYSGISDEYKFVDFGSVKKTHNLKFKEYIGHAPKFFAAEGPIEPGSQNHVIDLFELVKSGKGSKVGTFADEFGYFDDQNKLHYYNYHKSVESNTYDPENFSVKMINIDVSKIDKFYLIAEQGDIIIHPILENLDIF
>NC_012416.1|WP_012673270.1|845657_846479_-|DNA-polymerase-III-subunit-delta'
MKKVIGHNQAKKKIMNNLSVQSWLICGKKGIGKATLAKSFSNWLLIKNYNEVALDLHIVEGDTIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEPPKNSKIFIISHKPYDIQTTILCRCFQLNLLPLTYDETKQVVSSQCKFDNQTFDEMITLFPGMPGMIINTISSDAYEAYKCFYKFLHDLKNPNMINKVINSEIELELASYIIQAFILESIKREVNGVEILLSQWKKIDELFVAAKQLHLDKKHVLANVVNIMT
>NC_012416.1|WP_006280292.1|846496_847084_-|threonylcarbamoyl-AMP-synthase
MVSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYIDLINHFSPGPITYILPLKNNNILPNEFFKDSIGIRIPEHPIAISILNKLKVPIVATSTNISGKESVCKANDIPQSIKQHLSVVIEDDELVSGIESTIIDLTEDKIKVLREGAISLQTVNNAFSN
>NC_012416.1|WP_010082479.1|847202_847673_-|hypothetical-protein
MAENNDNNSFTKRFTNRTPGGTGEGFSSKYSSQNTKERALGEKGKISELAGKKTESKEAFSESGGIKSKSRTVNERSFADATKRSRSDLIYLVRGKDRGKSAWHYVLVDKEKREMFLAKSRTGSIDVADYGEILYSGWGEDPPQAIIDKVNEEFGL
>NC_012416.1|WP_006280293.1|847748_848633_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MKNNIVIITGITASGKSELCDNLIEKYGNISIINCDSKQVYEEIPIITAQPPKQEVFYKLYGYVSAKENYSVGLWLEDLEKEVNHALENAQIPIITGGSGLYISSLIKGLSSMPQISQKVRKNVSELRKNLSKEEFYKLALSKDPRIQGKVFMNDSHRLSRALEVITETGKSIFVWQENRQPPLFNNFKIYTILPKREDVYRKINSRFITMIENGAIDEVKKLLSMNLAPHLPAMKAHGVPEIIKYLKGEITLDEAIQIAQTNTRHYAKRQYTWFKKQFLNAEVIDCANKLKIF
>NC_012416.1|WP_012673271.1|848629_849577_-|hypothetical-protein
MSSPISEEKENPIVTLRAQAEKFDFSKLRADEKDISANSGKQMYEDFDRMNFVINKKNIDTILIKALINRDKEEFDKFWEKYCEGLKVSNDKETDRYKEEVEKFYNIGKGYTNLLTKEEDENKSYRAFAKEVFKEIFKYAEAQVPSDSILEELVINCNQAGYVGALYAEDKPLFHVAMAYELVFGSSHTTHINCSDPSHATIRIEEKIAVCTLAKSEEELCKLDSSLEFTLKSQGDKNVTYEDGKLSLTVPKRLKDYNIGDKNLFDVIKECFQKFCERLGFFKIKIEHGLGDPLEVSDHLENMEPPIRSNEHGLN
>NC_012416.1|WP_012673272.1|849881_851903_+|ATP-dependent-DNA-helicase-RecG
MSNQIFLNSRLENIPKFHSTILPKLCGGDRVMDLLFYRPLSYVDRSKSLPDAQVGEFITFIAKVYEHQSPTFRGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGASVIISGKLEKFAEHWQITHPDYVSLDINQFKKIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAEAEVCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSSSKLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMADFELLLDIFEYRSRLHFSKFQ
>NC_012416.1|WP_007549783.1|852935_853223_+|hypothetical-protein
MSNNFNFKEFFNHYETNSTSDDIQRYYLLWKSVIAQAMIDAASHCKKTESLVEKRKAISWLSDFSQDFVHTCILADCDPVYVKNKIQPTLKSLTR

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Crispr_ID: NC_012416_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_8

852778-852874

Unclear

Consensus_repeat	Method
CGTCATCCCGCTGCTTGTTAGCG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_012416_8

>merge|NC_012416|8|852778-852874|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCGAGATACCGCGAATGAATCGCGGTATGACGGTGTAATGACGGTTAAGTAATTCGTTATCCCGCTGCTTGTTAGCG

>NC_012416|8|6|852778-852874|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCG	AGATACCGCGAATGAATCGCGGTATGACGGTGTAATGACGGTTAAGTAATT
CGTTATCCCGCTGCTTGTTAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_006280400.1\|842575_844072_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235835
NC_012416.1\|WP_012673274.1\|857908_858943_+\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NC_012416.1\|WP_147737887.1\|854654_855944_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280292.1\|846496_847084_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NC_012416.1\|WP_012673272.1\|849881_851903_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NC_012416.1\|WP_012673275.1\|858945_859818_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NC_012416.1\|WP_012673276.1\|859821_861306_+\|DegQ-family-serine-endoprotease	unknown	unknown	gnl\|CDD\|273938
NC_012416.1\|WP_012673269.1\|844789_845584_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007549783.1\|852935_853223_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007549698.1\|864045_864276_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673277.1\|862647_863952_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673270.1\|845657_846479_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
NC_012416.1\|WP_006280734.1\|853238_853814_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280293.1\|847748_848633_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_012416.1\|WP_006280401.1\|844068_844731_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226259
NC_012416.1\|WP_012673278.1\|864296_866309_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_010082479.1\|847202_847673_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_094189578.1\|856051_856884_+\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_012416.1\|WP_012673271.1\|848629_849577_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007549151.1\|841708_842065_+\|holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|237780

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_012673276.1\|859821_861306_+\|DegQ-family-serine-endoprotease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_012416.1\|WP_006280400.1\|842575_844072_+\|cation:proton-antiporter	gnl\|CDD\|235835	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_012416.1\|WP_007549151.1\|841708_842065_+\|holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|237780	PRK14659, acpS, holo-[acyl-carrier-protein] synthase.	1.67744e-70
NC_012416.1\|WP_006280292.1\|846496_847084_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	1.51842e-58
NC_012416.1\|WP_012673272.1\|849881_851903_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_012416.1\|WP_006280293.1\|847748_848633_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.21039e-100
NC_012416.1\|WP_006280401.1\|844068_844731_-\|hypothetical-protein	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	3.85818e-13
NC_012416.1\|WP_012673274.1\|857908_858943_+\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.06833e-132
NC_012416.1\|WP_094189578.1\|856051_856884_+\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.31668e-30
NC_012416.1\|WP_012673270.1\|845657_846479_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	4.76358e-35
NC_012416.1\|WP_012673275.1\|858945_859818_+\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	2.25677e-112

>NC_012416.1|WP_012673272.1|849881_851903_+|ATP-dependent-DNA-helicase-RecG
MSNQIFLNSRLENIPKFHSTILPKLCGGDRVMDLLFYRPLSYVDRSKSLPDAQVGEFITFIAKVYEHQSPTFRGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGASVIISGKLEKFAEHWQITHPDYVSLDINQFKKIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLAEAEVCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSSSKLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMADFELLLDIFEYRSRLHFSKFQ
>NC_012416.1|WP_012673271.1|848629_849577_-|hypothetical-protein
MSSPISEEKENPIVTLRAQAEKFDFSKLRADEKDISANSGKQMYEDFDRMNFVINKKNIDTILIKALINRDKEEFDKFWEKYCEGLKVSNDKETDRYKEEVEKFYNIGKGYTNLLTKEEDENKSYRAFAKEVFKEIFKYAEAQVPSDSILEELVINCNQAGYVGALYAEDKPLFHVAMAYELVFGSSHTTHINCSDPSHATIRIEEKIAVCTLAKSEEELCKLDSSLEFTLKSQGDKNVTYEDGKLSLTVPKRLKDYNIGDKNLFDVIKECFQKFCERLGFFKIKIEHGLGDPLEVSDHLENMEPPIRSNEHGLN
>NC_012416.1|WP_006280293.1|847748_848633_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MKNNIVIITGITASGKSELCDNLIEKYGNISIINCDSKQVYEEIPIITAQPPKQEVFYKLYGYVSAKENYSVGLWLEDLEKEVNHALENAQIPIITGGSGLYISSLIKGLSSMPQISQKVRKNVSELRKNLSKEEFYKLALSKDPRIQGKVFMNDSHRLSRALEVITETGKSIFVWQENRQPPLFNNFKIYTILPKREDVYRKINSRFITMIENGAIDEVKKLLSMNLAPHLPAMKAHGVPEIIKYLKGEITLDEAIQIAQTNTRHYAKRQYTWFKKQFLNAEVIDCANKLKIF
>NC_012416.1|WP_010082479.1|847202_847673_-|hypothetical-protein
MAENNDNNSFTKRFTNRTPGGTGEGFSSKYSSQNTKERALGEKGKISELAGKKTESKEAFSESGGIKSKSRTVNERSFADATKRSRSDLIYLVRGKDRGKSAWHYVLVDKEKREMFLAKSRTGSIDVADYGEILYSGWGEDPPQAIIDKVNEEFGL
>NC_012416.1|WP_006280292.1|846496_847084_-|threonylcarbamoyl-AMP-synthase
MVSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYIDLINHFSPGPITYILPLKNNNILPNEFFKDSIGIRIPEHPIAISILNKLKVPIVATSTNISGKESVCKANDIPQSIKQHLSVVIEDDELVSGIESTIIDLTEDKIKVLREGAISLQTVNNAFSN
>NC_012416.1|WP_012673270.1|845657_846479_-|DNA-polymerase-III-subunit-delta'
MKKVIGHNQAKKKIMNNLSVQSWLICGKKGIGKATLAKSFSNWLLIKNYNEVALDLHIVEGDTIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEPPKNSKIFIISHKPYDIQTTILCRCFQLNLLPLTYDETKQVVSSQCKFDNQTFDEMITLFPGMPGMIINTISSDAYEAYKCFYKFLHDLKNPNMINKVINSEIELELASYIIQAFILESIKREVNGVEILLSQWKKIDELFVAAKQLHLDKKHVLANVVNIMT
>NC_012416.1|WP_012673269.1|844789_845584_-|hypothetical-protein
MTDNKLTVWQSIEVLTKAILNMQKKLSLIKNIASDQDITLEKGKELLSGIYEANFKLNKTINIATLPKIGYHMLNGELVVRNHITEEEVKIPGDFHYLKVVKSDHDNYKLTFCNFLGNEFFEYKKYDPQYSGISDEYKFVDFGSVKKTHNLKFKEYIGHAPKFFAAEGPIEPGSQNHVIDLFELVKSGKGSKVGTFADEFGYFDDQNKLHYYNYHKSVESNTYDPENFSVKMINIDVSKIDKFYLIAEQGDIIIHPILENLDIF
>NC_012416.1|WP_006280401.1|844068_844731_-|hypothetical-protein
MEDKLLESVKNKSYFSKAVEWYCHRYLFCVAERSWMALIVSLLLVCLCLLTLNIYLLFPVKKDLNFVKYMNHTEDEFSAMHKLSFSKKEDEYTSTARYLISKYIEIYESIKTVEPKYQENFIRNNSIHKIYQGFQEKTNNEAGNLSLSKRKIANINVITLSIDRSTKDLVTFAGNATVVFTTEQNKEDTVEISFTLSNIKATLAGIIPFKFIVNGYKYRF
>NC_012416.1|WP_006280400.1|842575_844072_+|cation:proton-antiporter
MDCVLTSLSLPFSITENYLLITALIPLLSALVIFFTGKWPRVNNSITVTSSVLLFTYTCLCTLYWVYGDHSQFILMDFGNNLHISLKLESTGVIFSLLISFLWILTSIYAICYMQNNYADSNHSSFLCFFSISISCAMFIAFSGDLLTTFVFYELLTISTYPLVTYNSTNESMIAGRYYFGVLFFSSLVLFFPAIGLLYNEFHTLDFVSGGIFKFDTSLITFIAVCFAMLIYGIGKAALMPMHFWLPKAMVAPTPVSALLHAVAVVKSGVFIIIKVILYTFGVDNMQRFVQQNWFTGGWLPYVAGFTIITASLIALKQKELKKLLAYSTISQLSYIILFASIFSELSMRVAIFQLVCHAFAKITLFFIAGAIITRAGEKYIDKIYGIGRSMPISMTAFAIGALSMIGVPPAPTFWGKFLIFQAVFNSGNVILSVFVTLVLIVSTILNALYFLPIIYNAFFLKPSQNYFIKKTPILLVLPPVITAMCTLVIFFSYQVIF
>NC_012416.1|WP_007549151.1|841708_842065_+|holo-[acyl-carrier-protein]-synthase
MIHGIGTDIVYIPRVSRILQKYGEKFLNRIYTEKEIELSRKYNSQEMRARYFAKRFAAKEAFVKARGSGQGIIMKDIEIYNDVRGKPYLTVSKDFISKIHLSLSDDGDYATAFVVICV
>NC_012416.1|WP_007549783.1|852935_853223_+|hypothetical-protein
MSNNFNFKEFFNHYETNSTSDDIQRYYLLWKSVIAQAMIDAASHCKKTESLVEKRKAISWLSDFSQDFVHTCILADCDPVYVKNKIQPTLKSLTR
>NC_012416.1|WP_006280734.1|853238_853814_-|hypothetical-protein
MISLFYKLRLLNYILGSLKDIIVKLFLFTMYLYTFSIVLMFLSNGFWYAVEFCSFKNAFYRLFQYCKWYYENREDLGYGISIRILVAFLTPHFLYKLLLGTGWKSFLKEKIIQILNTRRKKGSEFSNSSKPSGSSYSNKNNYSNSSGNNERQAQDAKRKVNMIKQLLIKDIEATIDRRLNYIFFGKRSKPH
>NC_012416.1|WP_147737887.1|854654_855944_-|hypothetical-protein
MKTEEKIRNFNSVKEMFIKEVLEDKAVNNAALTKEIFSKLGEKILEKAYSVDGQQSAKKDQLINRLRQQVDFVNKLDAKKLQNLLSKDNNSLYEIFSEHHNEIKEIIKKCKTEHKLSNSIENLNEVAGKYGIRKGSMQSFENSSSRSSSMSFLNSVSTDSTISSEAELLNPANHKEVKTATSLWDKVSSPFKSGKKSEKTSEVKYQVLSESDTLPRKIGNSTFYVDTPTPIENTNKTATIGGRPGVARRNSTSNLTRVETPEVPTRSASLTNLNGQSSFSEDVLSDPKVNQYLGNSNKGTLTRSNSFDSARGSSGPSTPTSSLERLFQSFSKDEVGAAMEKDLKEFSLSAKTESTLHNSFSNRNGSDSGFNSPTSSPTHTMFTENGKAKTQADLRKTGHLDKLVGQPSTKVAVDTDVQQQAAQTAVKTN
>NC_012416.1|WP_094189578.1|856051_856884_+|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWARIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA
>NC_012416.1|WP_012673274.1|857908_858943_+|FtsH-protease-activity-modulator-HflK
MFDENNPWNLGKKPVGNKTPNNEDILSKAVSDIGFFLNGLTKNRGKKPYFIIFIILLLYACTGFYIVHPSEEGIELTFGKYSNTEMSGLRYHFPYPIGKVFKVNVKEVNREEIGVSSSYGRDTDRGEGVMLTGDENIVNVNFEVQWRVRDAKDYLFKVRDYKPGFSVKNAAESAMREIIGKNTISFALGQGRPEISRDTRILLQQILDGYQMGIEILSVQMKKIDPPEKVISSFRDVQSARADKERTINEAYAYNNDIIPRAKGEAIKIKLDAQAYENEVINEAKGNANRFLSLYEEYRQNPSLVKNRIYLETMENIFSKVDKVVVTDDLKGMFSYLPLTNLGK
>NC_012416.1|WP_012673275.1|858945_859818_+|protease-modulator-HflC
MSSNIKIVFVSVFVVLLIVLSNSIFVVQETKQAIVIQLGKVVRDVRESGLYFKLPFINSVEFLDKRVLDLSPDKIPREVITADQKRIIVDAYAKYKITNPVTFYQAVRNESGLVRRLYPVIEAHIRENIGRFSLISLLNEKRSEVMQLIQRGVYSEAEKFGIEIIDVRIKRADLPEENSSAIFRRMQTEREKEAKEIRAEGEQAGQEVRSKADKLKREIISSAVKESYEIRGRGYAEATRIYNEAFKVDEEFFNFYRSMSAYSKSFAENNTKFVLSPNNNFLDILNKGWK
>NC_012416.1|WP_012673276.1|859821_861306_+|DegQ-family-serine-endoprotease
MKSKAFILSIFAYFLIAFSSYANMFDWNAKKVVDASTTACNCNQGLADLVEELIPAVVNISSEQIIKQENNSRTRVPSMPGNNFFDDFREFFEHFDQFFMDRGPSVNKEVVLLGSGFIIDKGGTIVTNYHVIKNAKDITVTMNDNTYFKAEVLGYDARTDLAVLKINSDKDLSSVAFGDSDKARVGDTVMAIGNPFGLGGSVSTGIISARSRDISIGTMNEFIQTDAAINRGNSGGPLFDLNGKVIGINTAIYSPSESGGNVGIGFAIPSNLAMSIIDTLKSGKKIKHGWLGVQVQPITKEFAESLGLKDIKGALVASIVKDSPAEKGGIKVGDILLEFDGKKIDRMTQLPQMVSRAGPEKKVQVKLLRKSKEVNIKVVIGESTNDGQDNNQEENKSTSDYVTGLTVSNLPKESKESNPTKGVIVTNVDSNSNATLRGIKKGDIIIQLDGTDIENTNDFQKQVDSAVKKNGKDSIMLLIYRNGNQFFTSIKLKK
>NC_012416.1|WP_012673277.1|862647_863952_+|hypothetical-protein
MVESFSGNNKGSNFIEEAKIMENFSDNNGNGSSIFQGKLREQDFSAEQKLNELKAAIEELTRQDLLRRLECERQASSCIDEISSQAELHIGEGDDEDYFTGEKGRVLGDFWNFFESLFTLFEVDVDDPKIYQMLKEKKEKNLIAAIMKFLRDKLKELIKKIFARDLSFNQRLDKEIKELQEKLGSGELSEEEFTRALERLTALQDLKLRLQMAVVGWIVTMFAEMFGVELAAAVAASTEKEDKKAEKTSLKEENKEVCENVEMKVDEREKPKVPVFLFDVSPGFVRPVPLSKPELDLLPKPIMPSIFKEVINNENREVKETKPKVEEEKKAKQEEPKKTEPALKQKAPKKEPVIFRDTGQSSERGQWENDASRQEIPTIGSVGEQNMRNSGNIGKETIDIDKICGELFAGQDQISPESELNSINVQPKGGYKGK
>NC_012416.1|WP_007549698.1|864045_864276_+|hypothetical-protein
MDKKQQASSSSQGDPRFKVGSGGYDSAAWMAANRGTGGGGPDMHKDPSKFDRCYNYPYTGMSDAKVESAQGSNKKK
>NC_012416.1|WP_012673278.1|864296_866309_+|hypothetical-protein
MTSLDFVKELVNAFNVSNYGSKVNTNFVVEGDNIVVKFNCGRRSAKRYLSQMARDLVREYYSDESVARYAFDLGSFPFHFDKEWLKYDGKTRITKLTVPIDSGVIFNLKVHFAEEFKLDVKNQVIKAIDEKHHLGKKHIEEILNASIGQVEIDSFSGYIKCLLFNSPNLQTYFIGALQEQIKKHGYNYSGFYDIDDNKVYFKDVENIGFVRSVTETSKKKTAYNFNLQGVGNLKVKAERYKGAMGELIFRLAGVSICGYYRDNFISEDRISNGDHFAFIPMVKEGNSLRYLNYMEANKINAKFSHDLFTNVRGQTKDTESNEFDEVYALSDRQIALLIPVIIENSVINKDGQIEIDPGLPRTLLAEASPTQEFPTQSQGVVKDSSRQGSEREEGKGGLFQLVPGKIDSSQSTGDQSQLSLSIPSPTAWNDSTFLNLEGSNEEPEKQQVTDESDRKSSDECSEAKSQDSKSPKKHGGGVQKMKKWLSSTFSKQYDVNLKRHDEGRGTTRSTPETPVTKKSSVSKLFSSFPARIRARSNPSSAVTSPTHEGGPEWQQRLNPDQREELRPFLSPELRKKLDSNSLSPEDEQLKHLLYTPSGQEKMKKNFESQELQLRRLAEAQLSSPDNSNRDSGFSSMGSPVSPVVQHKGSAPLKVTECSVQQVNSHSVERT

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Crispr_ID: NC_012416_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_9

1013342-1013452

Orphan

Consensus_repeat	Method
GAGATACCGCGGCGGTATGACGGTTCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_9

>merge|NC_012416|9|1013342-1013452|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGGTGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTAGAGATACCGCGGCGGTATGACGGTTCGCGG

>NC_012416|9|7|1013342-1013452|CRISPRCasFinder
GAGATACCGCGGCGGTATGACGGTTCGCGG	TGGTATGACGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTA
GAGATACCGCGGCGGTATGACGGTTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_019236827.1\|1014231_1014375_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007548963.1\|1008925_1011301_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_010962965.1\|1004823_1005780_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_012416.1\|WP_006280131.1\|1016779_1018027_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NC_012416.1\|WP_007548959.1\|1005772_1006810_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_012416.1\|WP_007548965.1\|1011527_1012025_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673326.1\|1003060_1004077_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NC_012416.1\|WP_006280373.1\|1021398_1022178_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NC_012416.1\|WP_007548398.1\|1014412_1015960_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_012416.1\|WP_010962967.1\|1006820_1007003_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_012416.1\|WP_006280452.1\|1007341_1008124_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NC_012416.1\|WP_012673330.1\|1022204_1023242_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673325.1\|1001428_1002757_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NC_012416.1\|WP_006280130.1\|1015956_1016745_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_012416.1\|WP_012673328.1\|1018313_1019732_-\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NC_012416.1\|WP_012673327.1\|1013533_1013977_+\|PD-(D/E)XK-nuclease-family-transposase	unknown	unknown	gnl\|CDD\|372314
NC_012416.1\|WP_007548967.1\|1012090_1013254_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NC_012416.1\|WP_006280372.1\|1020691_1021399_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NC_012416.1\|WP_012673329.1\|1019949_1020447_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007548961.1\|1008116_1008818_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_010962965.1\|1004823_1005780_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.57525e-180
NC_012416.1\|WP_006280131.1\|1016779_1018027_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NC_012416.1\|WP_007548959.1\|1005772_1006810_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.6684e-158
NC_012416.1\|WP_007548961.1\|1008116_1008818_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.63948e-101
NC_012416.1\|WP_012673326.1\|1003060_1004077_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	9.56811e-67
NC_012416.1\|WP_006280373.1\|1021398_1022178_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	7.01283e-126
NC_012416.1\|WP_007548398.1\|1014412_1015960_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	5.22692e-139
NC_012416.1\|WP_010962967.1\|1006820_1007003_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	2.18835e-21
NC_012416.1\|WP_006280452.1\|1007341_1008124_+\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	2.51684e-73
NC_012416.1\|WP_012673325.1\|1001428_1002757_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NC_012416.1\|WP_006280130.1\|1015956_1016745_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	5.47873e-25
NC_012416.1\|WP_012673328.1\|1018313_1019732_-\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NC_012416.1\|WP_012673327.1\|1013533_1013977_+\|PD-(D/E)XK-nuclease-family-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	3.78516e-17
NC_012416.1\|WP_007548967.1\|1012090_1013254_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NC_012416.1\|WP_006280372.1\|1020691_1021399_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	3.37117e-47

>NC_012416.1|WP_007548967.1|1012090_1013254_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKVSVLGSTGSVGKKTVDLLSKRKEEYQVEALSAHSNFALLAHQAKLLNAKYVAISDERLYKDLKESLLGTDVKIAIGATNVAAIPVDLSVVAIVGIAGLGPVMEVIESGTKVIALANKESIVCGGKLLLKKAKEKNVQIIPIDSEHNAIFQILQNDDKCVEKIILTASGGPFLNYSLEQLRNIMVDQALSHPTWNMGKKISVDSATMMNKALEIIEAHNLFNISPDKIEAVVHPESIVHGIVTYKDGFNFAVLAETDMAIPISYALSWPERLVLNYKLDLTKQGKLTFQEPDHKHFPVLKLSMEVLNSSTPQTNSIVLNAANEIAVNEFLKSRIGFLEIVEVVESTMESFGSYTDINSLSDIINIDCESRIIAHKIVESKVVAYS
>NC_012416.1|WP_007548965.1|1011527_1012025_+|hypothetical-protein
MSEAQGPNIAEWQAQQQHQEAAGEKSGFGLGHSDSVSTVVDGMKWLFNFHEGAIAAYSNVFEGLVSGSSLVTLFGKSGNMFGIKFLEGLAEYFSGGGGEDMPSEGMDMAHGDDGHHSDDYPHANNEIAHNADGLQDMHDAGDHHGQSFSPGPSPSVGDDHGHELG
>NC_012416.1|WP_007548963.1|1008925_1011301_+|hypothetical-protein
MAVKHIRKRLYQAIMLPLIALFFIAAAPFVALSLLVFNIWNTESINKALKYIIIAPLVVLYLPCAMLALVLHLSISTLLTVAKITLFPEFFLSLRIKEGIKFSRVFSLSITQFHNMDFYAYIKDSKTFFKIKDSNRKLLVALLKDNDFSIQDDTPFHFYETHLEFVTDVTTKISDKEKSKIIFDYLGLSNLKPLIQKDSYGERRLYEIYNTHEKLIKVVNDIDIGLLKTLLKLNESSVRNPKYMCISRLSNVIDLFDNNDLVKNMSDAFRNKQILAVQMAEYLSIFLGHEYNGYYSKKVMQDNLKKLFLKKDLIDNLSSNLGAQSSLMLIIKYFLRKEMSEREFDNLTSMLEDKNMIDNLKHIDDINNVLPHTLECNGYSTFLGLREIFDLKTAASDISNLHLLLANNRLFYKFRGIPIGVLRKICSTELYENCANVDEVLAFFDCLGDKSKNKNILDNLIVAFEKDPEATHALLNSKLFNSRNEILRVLSDEKFDGNKVREILNHINLLWTLRKNSMFNNDMDLEDKLFYTFRPRFINSEFRGCAQDYALLSGIHNNQRAERVFSKSVNLFQIFLKEAIKDRYELMFPIIEDTKVEHLVDGRFISKVRDKINRYLSNLLIFKGNLFSDVSNILRLQVIIILFFPLFEFEEGLHTTLEERWEKILKRKFTELFVAQKYQQITPESLAKIQDLTIQDLSAIPETEEIEEFLRKKGITNSDDLSLLAKLIEDSIHIANVIGERVSLTQNITQTICDTFKDISVNHNTKQTPPSLLDLCKTNIIGSSLTEQISC
>NC_012416.1|WP_007548961.1|1008116_1008818_+|ATP-binding-cassette-domain-containing-protein
MRNPIISILNLSLSFDDRTVLKDLNFDILKGESLVILGGSGSGKSVLTKTIIGLLAPDSGSVKINSKSKNKFGVLFQNSALFDYVTVWENISFNYKKRFNISKKEAKQLAIEKLNDVGLEESIADMFPIELSGGMKKRVALARAIAHNPEIIILDEPTSGLDPIMSDIVNEIIIKLSRDLNPTIITITHDIHSAFKIADKIAVLYEGEIISHGTVQEIQNTNNQYIKKFIRYI
>NC_012416.1|WP_006280452.1|1007341_1008124_+|ABC-transporter-permease
MSFFDINSVRIIGRYFINFLLRLGSAFIFFIQSLYHCLVPPYYFSNVARQIIEIGFFSLPIVGLTGVFIGAAIVLQSSLSDPLINQEQIIPKLVTITIIKELGPVLISLIMVGKVGSSVAAEIGTMRITEQIDALTTLNINPFKYLIAPRILASIIVFPILTVCADLIGIFGGCITAVFEFNHNLNIYIKHTAQFFNTYDFITGLIKATVFGAIISVSSCYYGYHCKEGARGVGVATTSTVVLSSILIILANYMITLIHA
>NC_012416.1|WP_010962967.1|1006820_1007003_-|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHHAIEPKNVVVCSTTGEFMLPHNVAVDGSYKGKRVFIKQQAE
>NC_012416.1|WP_007548959.1|1005772_1006810_-|phosphate-acyltransferase-PlsX
MLSTVNNNIVIALDAMGGDFAPLSVIHGAGFFLDNLVDPGIKVFFHIYGDKEEVSPLLLKYKKVSNNSEFTHCSDNVLANDKPSFALRHRKDSSMKAAIVAVKEGKAFGVVSSGNTGALMAISRFVLGTLPNIYRPAIASICPTKTKSFALLDLGANVDCNADSLFQFALMGSIFAKIALKIDNPEVALLNIGTEEVKGNDSVRGAFELLKNAPGINFKGYIEASEFLEGNIDVIVADGFVGNVMLKTAEATASTFINLIKQEVFNSWIAKMLVGILLKSKLNKALTRFNPKIRSGAMFLGLNGIIIKSHGNSDAISFAHAIKFAVNAISENLNQKIINGVSHIE
>NC_012416.1|WP_010962965.1|1004823_1005780_-|ketoacyl-ACP-synthase-III
MNKSFILSTGSYLPRKMLSNNEIASIVETSDEWIRQRTGIVQRHIADEGELTSDLAVNAAKSAIEKAKISVDEIDLIIVATTTPDKTFPSCATIVQSKLKCKNAFAFDVQAACSGFIYAVTVADSLIKSNNRIKYALVIGAEIMSRIVDWEDRSTCVLFGDGAGAVVMKSEMGRSGIISTNLYSDGNVDILCTNGGISSTGDSGKICMNGREVFKHAVDKLTASVEETLKCNNLKITDIDWLIPHQANIRIIEAVVKKLDFPIEKVINTVDKHANTSAASIPLALDYAIQESKIKSGNLVLLISIGAGLTWGSVLLHY
>NC_012416.1|WP_012673326.1|1003060_1004077_+|NAD(P)/FAD-dependent-oxidoreductase
MKTDIVIIGAGPVGIFTAFQAGMLDMGCHIIDVLDQAGGQCTALYPEKPIYDIPGYPVITAQKLIEQLMEQASPFKPIYHLSQKVEKISNNEGENFTIITSIGTEVKCKAVIVAAGNGMFEPNRPPLSGILEYENKSVFYSVNKISDFQDKTIVIAGGGDSAADWTVELSKVAKKIYVIHRRKEFRCTPETRNKLESLESDGKIELVVPYQLHELAGGNGQLSTVIVKNIASKEEKEISADFLLPFFGLSMNLGPINNWGIQLEHSRIVVDPATLKTSRDRIYAIGDIAIYSGKLKLILSGFAESAMACYDIYKVIHNSPVNFQYSTSKGIHGKEKLP
>NC_012416.1|WP_012673325.1|1001428_1002757_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDSSQLIDNGIIIYFPAPNSFTGEDVIELQVHGSKAVIKIILEELSKVFVMAKPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREGLHIVITGEPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIELEGISRAKKRSFEADLRIELFPFEQRPNINCNVVNSDTIYVLSKADDVINNHDIKINGIDLLPVSILKGIGTNKLISLIKEKAEEKFGHDRDTPVITRQRHRNHMQKALEHLQRFNIDNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK
>NC_012416.1|WP_012673327.1|1013533_1013977_+|PD-(D/E)XK-nuclease-family-transposase
MALSKFLDPKLDLTFKKIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMVRPESLRSYCLKGEEFLQKETERILKLIKPDVLPSESTHQCESGNRLVPSDADNEPPLEKEDAQS
>NC_012416.1|WP_019236827.1|1014231_1014375_+|hypothetical-protein
MASKPQGMLMEVQVKENGESECHFVTKWIEFVTLIRVKTSRLPFGPS
>NC_012416.1|WP_007548398.1|1014412_1015960_+|group-II-intron-reverse-transcriptase/maturase
MITSKPVSASTESFEAWKQLPWKKCQKVIVRLQRRIVKAVQKGRWGKVKALQHLLTRSFSGKALAVKRVTENQGKNTAGVDRQLWSTCNAKFQGIKQLKQRGYKPSPLKRIYISKSNGKRRPLGIPSIKDRAMQALYLFALEPIAETISDRHSYGFRPKRSCADATVACHLLLASRNQLQWILEGDIKGCFDNINHEWLMKHIPMEKKILHSWLKAGFLESKTLYPTTAGTPQGGIISPILANLALNGLEKLLESRFGKLGSRRRNKIRSGVNVIRYADDFIISGFTHEVLENEVKPLVSSFLHERGLILSEEKTKITSITTGFDFLGCNVRRYNKKLIIKPSKESIKRLLNKARTLIKANIENTQAIVIKSLNSLLRGWGNYYHHVCAKKAFRKIDNEIWHSLWKWAKKRHPRKGLRWIKNRYFKVMGQRQWVFAAPICKNKPKEIRYLRLLKLIDIPIRRHVKIRADANPLDLKWKKYFDERVKRTRMLASSFSREGSLLLVSPLRMMFPEES
>NC_012416.1|WP_006280130.1|1015956_1016745_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKDKPVLEKKNLDKGLKRSVGKPACCVSKGGGSSNTASLPDQLTRDKGFEKRAQLYAAKAYSRQADKSGKYIDLKKVFFIAISNCNLFPDKLDYISSHTIRDEKTNEHDLKDFQFVFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGTE
>NC_012416.1|WP_006280131.1|1016779_1018027_-|IscS-subfamily-cysteine-desulfurase
MNVESKKIHDAKIKLPIFLDYQSTTKVDPRVLEVMIPYFGEFSNAHSRSHSFGWTAEEAVEKARKHIADLVNADSKEIIFTSGATESNNTAIKGVAHFYKNKGNHIITVCTEHKCVLDSCRHLENEGFKVTYLPVKQNGIIDLSKLEEAITDQTILVSVMMVNNEIGVIQPVKEIGVICRKHNIFFHTDAAQSFGKVPIDVNEMCIDLMSLSSHKIYGPMGIGALYVRRKNPRVRLIPLISGGGQERGMRSGTVPTPLAVGFGEAARIAREEMKKETTRVEELRDILYNKIKEAFPDIVLNGDYENRIPGNLNLSFPYIEGESLIMAIKDLAVSSGSACTSASLEPSYVVRSLNNGHDLEHSSIRFGLGRFTTKEEVLYAADLVAKNVGRLREMSPLWEMVQEGVDLNTVKWDSH
>NC_012416.1|WP_012673328.1|1018313_1019732_-|metalloprotease-TldD
MPNLDQIFFAQNNVNINNVYKIVNNALSNSDGGELFLEFCQSESLVFEDNILKHMDLNTRRGFGLRSFCEDSTSFVCSSEISEKEISNAASMVKSSVSLNKTNSINLNEETKSLYSRINPINEMDLNSKIKLLNEVNEYVRSKNNCVKQVKITLSGEWQVVQIIKGDHRLSDIRPLVRFNVLVIVEKDGRTERGSAGHGGRDSYSKFISEKKWKEVANQALEQALVNLEAIPTPAGEMTVVLGPGWPGILLHEAVGHGLEGDFNRKKVSAFSNSVGKQVAASDITVVDDGTLPNLRGSISVDDEGTPPSYNILIEDGILKGYMQDHMNAKLMGVSPTGNGRRDSYKEVIMPRMTNTYMLPGKYTPKEIISSVKKGLYAVNFGGGQVDITSGKFVFSSSEAYLIENGKITQPVKGATLIGDGPTVLKKVSMVGNDLKLDPGVGTCSKDGQNVPVGVGQPTLKVDAITVGGTEI
>NC_012416.1|WP_012673329.1|1019949_1020447_+|hypothetical-protein
MYGEKDKLAYRKKVRTYSKRLVTTLSTISFIGYIAALVLNIPVLSLYFSIAGTIFSALSFALNIWSLNDHSRQQNLNKKSGIKNTPGQKKLTKIYLDIASSASFLIGGIASMSLFESSVIYFVSTPFFILGCVIMAANIVQTMISEPQTKNALENLSSNTARVQA
>NC_012416.1|WP_006280372.1|1020691_1021399_+|uroporphyrinogen-III-synthase
MKSILLTRPLLDSFNTRNILRKYGYKVYIEPVFTIKYLNPDISAYEFDVVISTSKNSVKAFSQICKEDDFPIITVGNSTMQAAKNLGFSDIISADSNVDGLISFIKAHYSNAIKFLYIRGQEVSCDLKKRLSEEDFNVREVVLYKTIIKRSLTNRCKNLLLDGKIDSVAFFSSQTARVFCSLVLKSGLSHVMNNTVAYTMSKNIADSLKLIKWKKIITSRLPTGESLIDIINKDC
>NC_012416.1|WP_006280373.1|1021398_1022178_+|exodeoxyribonuclease-III
MLKIATWNVNSIRKRVNQLCSFIVDSQIDIVLLQEIKCTEEQFPYAEIEKLGYEYAIYGQVARNGVCVLSKYPILEKFKIDIVEGYQEARYIECIIKHNNQKVRVGSVYVPNGQSPDSQAFEYKLKFFDNLYERMSTLLKNEELTIIAGDYNVAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKDAFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSDHTPVVCAIE
>NC_012416.1|WP_012673330.1|1022204_1023242_-|hypothetical-protein
MTGPQVKSSKPPKLPTQVTNEDEKIFEKEEHQVIHDAFIQLLKNKVQPKELKEDDEAVLAFMLSQNQIIFNNVKLEDVEPLSEENFSQFLLSVFEKIREKKLANEENLKNGKIKEVVDDCVADIRGTEAKDSSIKFVLEMLLLLIGGIKIDPKNISGSFMDGMKEKIPFLGKDKKEEDEPPLSDEEMVTTFLSKIFFPVLLSTIPMLIFGPTTLGVVLTAIGTIFAIKGGVEVLFSNDKKGTLYNPHSRDEKERKEWGNEISDGINKILGTPVEKAKGSEQPISVSEQISQGKEKSEQQPVPEQISQRNNRENEKSEQRDQSWTGKENKRREEPQSSKGKTTQVC

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Crispr_ID: NC_012416_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_10

1040928-1041068

Orphan

Consensus_repeat	Method
GATATTGATGAGGGTTTTGAGGAGATTGATCTTGCAGAAATTGATGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_10

>merge|NC_012416|10|1040928-1041068|CRISPRCasFinder
GATATTGATGAGGGTTTTGAGGAGATTGATCTTGCAGAAATTGATGAGAGTGATGTAGAAGTTAGCCCTATAAAAGAAACAGTGACTCTTGTAGATATTGATGAGGGTTTTGAGGAGATTGATCTTGCAGAAATTGATGAG

>NC_012416|10|8|1040928-1041068|CRISPRCasFinder
GATATTGATGAGGGTTTTGAGGAGATTGATCTTGCAGAAATTGATGAG	AGTGATGTAGAAGTTAGCCCTATAAAAGAAACAGTGACTCTTGTA
GATATTGATGAGGGTTTTGAGGAGATTGATCTTGCAGAAATTGATGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_007548562.1\|1038464_1039847_+\|IS66-like-element-ISWen3-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_012416.1\|WP_094745770.1\|1039956_1040753_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_012416.1\|WP_084741758.1\|1035237_1035651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NC_012416.1\|WP_012673332.1\|1029236_1029602_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280324.1\|1049066_1049864_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|379227
NC_012416.1\|WP_094189578.1\|1041488_1042321_+\|IS5-like-element-ISWpi1-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_012416.1\|WP_041582622.1\|1042317_1042509_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280462.1\|1027370_1028177_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NC_012416.1\|WP_012673334.1\|1046823_1048287_-\|phage-terminase-large-subunit	unknown	unknown	gnl\|CDD\|227697
NC_012416.1\|WP_006280233.1\|1033748_1035245_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NC_012416.1\|WP_080717643.1\|1044172_1044436_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_012416.1\|WP_007548930.1\|1035647_1038191_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379224
NC_012416.1\|WP_007549260.1\|1044898_1045516_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237680
NC_012416.1\|WP_006280463.1\|1028182_1028827_-\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|334855
NC_012416.1\|WP_007549330.1\|1029723_1031391_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238518
NC_012416.1\|WP_012673333.1\|1044411_1044645_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007548926.1\|1031399_1033334_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NC_012416.1\|WP_007549491.1\|1049870_1051121_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NC_012416.1\|WP_007549259.1\|1045515_1046499_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NC_012416.1\|WP_007549262.1\|1042743_1043937_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|227039

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_007548562.1\|1038464_1039847_+\|IS66-like-element-ISWen3-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.24793e-36
NC_012416.1\|WP_094745770.1\|1039956_1040753_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.71356e-30
NC_012416.1\|WP_084741758.1\|1035237_1035651_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	3.5932e-05
NC_012416.1\|WP_006280324.1\|1049066_1049864_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|379227	pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase domain. This family captures members that are not found in pfam00310, pfam07685 and pfam13230.	1.50621e-92
NC_012416.1\|WP_094189578.1\|1041488_1042321_+\|IS5-like-element-ISWpi1-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.31668e-30
NC_012416.1\|WP_006280462.1\|1027370_1028177_-\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.47066e-77
NC_012416.1\|WP_012673334.1\|1046823_1048287_-\|phage-terminase-large-subunit	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	1.74662e-55
NC_012416.1\|WP_006280463.1\|1028182_1028827_-\|dienelactone-hydrolase-family-protein	gnl\|CDD\|334855	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561.	3.28606e-31
NC_012416.1\|WP_080717643.1\|1044172_1044436_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	7.01314e-12
NC_012416.1\|WP_007548930.1\|1035647_1038191_+\|hypothetical-protein	gnl\|CDD\|379224	pfam13502, AsmA_2, AsmA-like C-terminal region. This family is similar to the C-terminal of the AsmA protein of E. coli.	7.20798e-08
NC_012416.1\|WP_007549260.1\|1044898_1045516_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237680	PRK14341, PRK14341, lipoyl(octanoyl) transferase LipB.	2.03985e-138
NC_012416.1\|WP_006280233.1\|1033748_1035245_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	5.71261e-124
NC_012416.1\|WP_007549330.1\|1029723_1031391_-\|aminopeptidase-P-family-protein	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	6.37759e-126
NC_012416.1\|WP_007548926.1\|1031399_1033334_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_012416.1\|WP_007549491.1\|1049870_1051121_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	3.08929e-70
NC_012416.1\|WP_007549259.1\|1045515_1046499_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	5.06701e-90
NC_012416.1\|WP_007549262.1\|1042743_1043937_-\|phage-portal-protein	gnl\|CDD\|227039	COG4695, COG4695, Phage-related protein [Function unknown].	1.01348e-93

>NC_012416.1|WP_094745770.1|1039956_1040753_-|IS5-family-transposase
MRKKYPTDLSEREWARIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKGIRSGERQNKVDKAR
>NC_012416.1|WP_007548562.1|1038464_1039847_+|IS66-like-element-ISWen3-family-transposase
MVNLLELCKNLQQKIERLEAKIERLEKENESLKAENKALKIENAELRERLGLSSKNSSIPSSKELYKIKKNKPKSERNIGGQVGHKGSFRANMDADKVVKIELPNTCECGGEIAICEKPYIHQKVDLPEIKPYVVEYQLEHGRCRRCGKRRSSKLPEGVTPDTFGPRVKSIIAAFSGFYKNSKREIASVVNDIFNLNISVGSISNSEHRVASKCKKMYEQIEQEISRSKVLHIDETSHYNKGKLAWCWMFASNTASFVKFTESRGMKVLQNSKFCNRNSLVITDRYAAYNYFADKNRQICWAHLSRDFERLAHSWNIEVKVLGCYLRNVATELFALKKALLKSEIDVLRFVRRARKLRKRTKYYLKEISRLPEAIGASRVAKNVLRSERMMWKFLDDPENIPLTNNHAERQIRHYVVYRKNSYFTQSKRGNTFLERIISLYLTWKQRGLNPFQNLLSIVS
>NC_012416.1|WP_007548930.1|1035647_1038191_+|hypothetical-protein
MKLSLYAILSISLVLVLLHVAATFKDWSGYRQYIIKELEKTYDAKVHIGGKVEVSLITPKLTIYNVYVQYNENKEQKLSDLISVRKIEIRPSFLSLFLFSLQPKSITLFGMKSNKENLINIINTKASGNTVDIVIKDSQVSFKSDFADIVNIKEVAVKKNRQFSGKVKVGDNNYDFSGKVDITKKNVHISVESNFVNLLFTGNRNQEELQGNLTLTINNSSGSVSDLAKIINLSFLSHVIPSENIKISSNISLNESEFTATDLKIDSKSMQASGTIQNDRKGNHTNFNISFSKVDLDSIQNDSQRTMNMKDLLECFRAVVPKNLSLNFNMEASNIQYQNKILDNFRAVLKSTDGKVKVNTLLKFPGINNISYLSGEISNNNVLSEFNGDLLVEGNDFGSFISCFFPSIKMKENQKNQFTLSSKLHLAPRILSISDIRLLNNKESLQGSIRVSHTKKRSVVDGEFSMHNLDADKYDHSLFSSLPKMQWLKNFQYDANIKARVNNLTLNDTKIKNLDFLLKMEKGKLVADKIKLSGEDFDITGNAKILADQKYAKPLLDVNLTGSKFNGKIITLPNLVETKRNSRNEIDQIQWSTKQLDFLDDKEGFDANVQINTAEFKTKQNVLKDFNLDAVMRNNTITIRQASYVLEHGQVFFQGYLRSDSINTRFSIVNLDTKKIGKVIGIDNVNGQVSLNGEIKTQGKSFHDWASNLSGDVNLQAQGIEVTNVDFNSFITNLLSSKNKSEISTLAYIDIYNGKTFFENISGKASIKSGICSTSLQFGIDQASGSISSNLTLSNFALASIFRFFFIPPNYSNPIYIDMHLDGPIWRPKMSFDVDQIFTALVGKKNS
>NC_012416.1|WP_084741758.1|1035237_1035651_+|hypothetical-protein
MYKPDLLLKEQQTVSSQCLTLGSRNFVDCMIWKTLFKSHWISVSHIQLYECCDLKAISTGKGVIPVLDYLDPASHATSSKMLCFNIRLATFLLTNLMSNQIFWIPVSSTGMTGVGAGMTGIGTGMTRRRDAGMRGLL
>NC_012416.1|WP_006280233.1|1033748_1035245_+|murein-biosynthesis-integral-membrane-protein-MurJ
MFKSIFTFSFFTAISRISGLIRDVLIATVIGANSLADIFFSSFRFANLFRAFFAEGAFTTSFIPLYSTESYDNKKAFNFASSVISITFIILVIFCLIMQTFSPYMIQIFAPGFDQSKFTLTVTLSRIMMPYIIFVSIASLIGGMLQVKQHFASTAIAPIVLNLCLIISLFVPYVKTPAHNLSIAVLIGGIFQLLLILFSAYKLKAAFSFSLELSNEVRLFFKRVIPAIINNCVTQISLWIDTIMASFIPNAVSYIYYADRLNQLPQGIIGTAIGTVLLPLISKQVNNTENIVKIQNKALNIGLMLIMPTTAAFIIIPDIILLTLFSYGRFDHYAVQQTVPTLIAFSLSLPAFIINKVLLPTFFAKGNLKIPTIFSLMCLGINVVLNLLLMNKYQHTGIAIATSVSTWINSILLISYLTINKMYKVSQALLLNIMKIFVATAVMSIALYIFNSLLAGLFFDKMLARIVYLATLIALSVIVYFGTLYLTFRGSLNNLKYV
>NC_012416.1|WP_007548926.1|1031399_1033334_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MHKYDVVVVGGGHAGCEAAAAAARLGTNTLLITHKISTIGEMSCNPAIGGVAKGVVVREVDALDGIMGRAIDRASIHSVILNSSRGAAVWGPRAQADRKLYKQAIQEIILNYNNLTVKEESVDDFLIESNNNGELCIKAVITSSGEHILTGKVVLTTGTFLQGVIHIGEQTTPSGRMGDKPAVELANTLNKYDFRLGRLRTGTPPRLDRGTINWSILQEQVGDNPPVPFSYLTEKINQPQVSCFITHTNENTHKIIRENLHRSASSYLSDVVAPRYCPSIEVKVKKFAEKSSHQIFLEPEGLDDDTVYPNGISNSLPIEVQREMIKSIKGLENAEILRPGYAVEYDYIDPRELFHTLETKKVKGLYFAGQINGTTGYEEAAGQGIIAGINAALSAFEKKESFVLHRTDSYIGVMIDDLVTKGVIEPYRLFTSRAEYRLAIRSDNADRRLTQKGYDISLVSHERYSVLQNKLESIKQLEEKLGSLTITPEQLRSYGIKISYDGIRKTALDLLSYPNIDWNKLQEIWPELSSVTRWNDKMGHTKADNRAKNEICEAVEIEAKYKPYLIRQEADMKFLREEINTQIPIDFNYSQVKGLSSEVIEKLQTIKPATIGIAKQIQGITPAAIVSILVYLRNRKTKVAANFV
>NC_012416.1|WP_007549330.1|1029723_1031391_-|aminopeptidase-P-family-protein
MSKIEEFRSFMHEINVDAFMLHTKDEYLNEYSEELTKLCGFTGTNGLLIVTKDNKCPFFTDGRYITQARNQLDRGNFQVYNIQEEDPREWIKANLTSTASLGYYLQYFTIEDIRKYENICKLIPCLAGKKSDYRKQAVVLHSIEHAGESSKDKCEKVAKSIDKEAEAVLLTDPNSISWLLNLRNENAKYTPCILGRAILYKSGNVDLFIQDKEHSTIEANLGNHINIFDISELENSLHKLNSIVMDPSTTPMSIMAVIKDKQVAEREDPCLIYKAAKNQTEIAGAINAHIRDGVAVTNFLYWLENNVGTELEAEEKILEYRKEQNLFKQLSFPTISAFNENGAIIHYRASSKTNKVIQKDGLYLIDSGGQYLDGTTDVTKTVAIGNPTDEQITHYTIVLKAHIAIASVIFPPGTTGGELDILARTHLWKFGMDYMHGTGHGVGSYLSVHEGPQAISKGNKVKLTPGMILSNEPGYYIPGEYGIRIENLMYVDKHKNGFLGFKQLTSIPYDRRLISVQMLTKDEIEWINGYHQFVYKNLENSVKDKEWLKKVCDPL
>NC_012416.1|WP_012673332.1|1029236_1029602_-|hypothetical-protein
MIDKGQEDEFMKQYMDTCKEQIEKLAKDPELLNQALKPFMQMSQQLMAGGMLEGAMPGMIPDLGSMDVNKMIAQMKEMIDYIRGNYKELMKERSSQIQELNESSKKLRGLVKKLIEKIESK
>NC_012416.1|WP_006280463.1|1028182_1028827_-|dienelactone-hydrolase-family-protein
MIELRGPEICAGGNKKNLIVFLHGWGSSGDNFIHLAKVMSKFLLGSYFAVPNAPFEREIGDGYQWFSLEDRSEEALYNGVKNATSIVNHFIDTKLKELNLKDTQLSLVGFSQGAMLAIHTALTRSQSCASVVAYSGRFLSPSKTAPEIKSKPNICVIHGDADDVVPFSSLDLAVKALKENGVNVEGHPIHALGHIINEEGIKLGVEFIKKNFKN
>NC_012416.1|WP_006280462.1|1027370_1028177_-|SDR-family-oxidoreductase
MHLFCFGYGYVAKFLSKKLLNLGWKVSGTSRSKNIQDVILFNYEKVSQDLLKSATHVLISIPPDGDDVVERYGDCLQNVKWLGYLSATSVYGDHSGNWVDEESETRPIEIRGEKRLKSEKKWLNSKLPVHIFRLAGIYGPGRNVLIDLQLGKARNVKKEGHFFSRIHVEDISNILFSSMQNIKPGEIYNCADDLPTTQSEVVIYATKLLNVSPPEPIELPDYAQSFYLGSKRVSNVKIKKDLNVSLIYPNYKVGLESLHVNKTEITSE
>NC_012416.1|WP_094189578.1|1041488_1042321_+|IS5-like-element-ISWpi1-family-transposase
MRKKYPTDLSEREWARIEKHFRVSYKKGGRPPKYSKREILEAIFYVLRTGCQWRYLPNDFPLWKTVYEQFRQWKKQGIFEKMNYEITKYSRRKIGRNEQPSACIVDSQSVKTTEKGGSKAMMEGKKVKGRKRHIITDTQGFILGCYVGAANENDRDGIKIALNNMRTKYTKVKKMWADMGYQGRNLKNHIKEEYDIDIEIVKRPPCRFWVHKDTPPELLPTREQGFKVQPRRWVVERTFAWVNRNRRLSKEYDLLTTSTENFIYLAMSRVMLKREYA
>NC_012416.1|WP_041582622.1|1042317_1042509_+|hypothetical-protein
MNLLVSGQPLNGVSGIANQLDSSLSPEKIEQICTKSDLLVDNLSSKLKGIKIENFSQALAVAR
>NC_012416.1|WP_007549262.1|1042743_1043937_-|phage-portal-protein
MNFNIFQRKKSAVFTKYSALQLMMEPSWSKRDYVSFAEEGYIKNVIAFRAINMIASAASSVPLTLCQLTDQGKSQLKAHPLLKLLYSPNPMTSKSEFIEGIVTYRLVNGNSYILMVESQNNRKPPTELYLLRPDRVEIVPGRNNVPYIYRYAINNNSYDFKVDKLTGCSAVLHLKTFNPLNDWYGLSPIEAAAYSIDQHNQAGAWNQAMLQNGARPSGAIVVKSAKDGSGGSLSQEQYQRLKAQINDHYSGSINAGRPILLEGGLEWKEMSLSPRDMDFIESKHSSARDIALAFGVPPQLLGIPGDNTYSNLVEARLSLWEQTVLPTLENIICHLNSWLIPRFGEDLCLSYDKDTIEILMEKRQKLWKYVENASFMTLNEKREAFGLPPQPGGDKLS
>NC_012416.1|WP_080717643.1|1044172_1044436_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MEYNIIFIESVLEKDLPALPKTIRLRIINAINKRLTVDPINLGEPLYYRFKGQRRLRVGDYRVIYSVNIIKYEVVITEIGHRKDIYK
>NC_012416.1|WP_012673333.1|1044411_1044645_-|hypothetical-protein
MANSKFSITFNNEISECLAGLAKIRNKSIKELAEKLIQEAIENEEDKILIERAARRNVSGVKKIRSEDVDWNTILSS
>NC_012416.1|WP_007549260.1|1044898_1045516_+|lipoyl(octanoyl)-transferase-LipB
MTEWLISNQLIDYNCAVKSMEEKIQQIHNNSADELVWLLQHPPLYTAGISATDDDVVEKLFPIYKTGRGGKYTYHGPGQRIIYLMLNLKKRNKCDIKLYIRDLSKWIINVLKQFNILGEFKEDRIGVWVNNNGVEKKIAAFGIRLRKWVTYHGIALNVFPDLSHYKGIIPCGLQDYGVTSMEELGVKVPLSELDDILKKEFYKIF
>NC_012416.1|WP_007549259.1|1045515_1046499_+|LD-carboxypeptidase
MIVYLLYFILTLCANTSIHAIDQVDIIAPSSKGKESDLTTIKEYVEALDFNPHISEKIYSNDNPFYSNSDEFRANDLVSALTGDSKIIWCIRGGEGASRLIPYLEKLPNDKKERIAQNKKILIGYSDITALHIHLQAKYDWQTLHGTMLEMIVNNSVSESSVEKLKELILNKRDSIRFDNLKTINNGIRLKDGRLKSKIIGGNMTLVENSIGTVWQINAKGKILFLEDIRVYPYAIERSLDHLKQAHIFDGVHAVIFGDFVNCYNDNLVEVVKERFAKSVNFPVFTMKGVGHGHTNDPLPFNTHAIISVQDEKEGLFFMDVQNVSYT
>NC_012416.1|WP_012673334.1|1046823_1048287_-|phage-terminase-large-subunit
MNFLKFIELCFQTVVPGCEYNDYQYIKVIADRLEAANVGKMRRIIFNMPPRSMKSLCISVAWPAWILGNQPTARIIVASYSRLLSEKHSLDTRCIMQSSWYRELFPEVELSKDQNTKYKFQTVQRGYRIATSVGGTLTGEGGDFIIVDDPLSPAQALSETFRKRATNWFDQTLVARLNNRKKGVIVLVMHRLHQEDLTGHLLSKPKNIWNHTCLPMISENKEIIYSIKKPAPPFLVPVTRVTTNEYKSWITASSARMTPPVILYSREEGQLLYPLDGGKEEVEMIKVELGSYAFAAQYQQNPLPLSSGIIKREWLKRYRNFSDSLSYVTQSWDTAVSTSSMSNFSVCTTWTKVGNKFYLLDVYRAKLEYPKLKEQVFSLAARWTPHAILIEAKTSGQQLVQELKTNSDLPIIEIVPHDDKLTRFYQIVPIIESGKVFLPHQAVWLNDFEYEILMFPETRHDDQVDSTVQYLQWVRDSSSRVAALRAL
>NC_012416.1|WP_006280324.1|1049066_1049864_-|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKITVLSGYGLNCEKETAFAFMECSRKLGIGNIEVKIVHINDIIDNPGELKLSNILAIPGGFSYGDDTGAGNAFALRIKNNLLDEFQEFLSQDKLIIGICNGCQILVKLIPEFSNLALIHNDIGNYQCRWIRVRVNPQSNSVWLRGLSELYLPIAHGEGKFFMDQDILNQLIESNSTALRYIDKNGNYANLQFPYNPNGSTYDLAALSDKSGRVLALMPHPERGIFFTQQDNWSLEKEKSKRLGVAVPKYGDGMLIFENALKYFC
>NC_012416.1|WP_007549491.1|1049870_1051121_-|phosphate-ABC-transporter-permease-PstA
MSIKKKFLKLLQSRRVHARIKRKNKKNRALRFCSFTALVISLGCPVCILLSILVNSYSALTVTKILLPVEINADLALASNPSDLRYKSIGLLNDSLRKVFGGTDFKDGDEILSRNSYKELEKFFRKKVKDSGEYEIWFTASSIINSINKDKYLNDRYAKLLDWLKEKRRVKKFFNKSLFLKSDSREPENAGILGAFIGSLMTIIVCLALALPIGIMSGICLYEFMPKNRLMTNIVEISINNLAAVPSIIFGVVGLTLYLGIFGLPRSSPLVGGMTLSFMMLPNIIIATKNAFANVPITIKDAAFALGAPHIKVILDHSLPIALPRIIHGTVLAIARILGESSPLLMMGMVAFIADTPTSFFDPATVLPVQIYIWSSNPEIAFVELAAIAIIALLLVLFALNLVANFVKRKFEFFNF

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Crispr_ID: NC_012416_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_11

1203648-1203758

Orphan

Consensus_repeat	Method
TGTTAGCGGGATCTAGAGATACCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_11

>merge|NC_012416|11|1203648-1203758|CRISPRCasFinder
TGTTAGCGGGATCTAGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCGGCGTGACGATAAGCTCGTCATCCAGCTACGTGTTAGCGGGATCTAGAGATACCGCG

>NC_012416|11|9|1203648-1203758|CRISPRCasFinder
TGTTAGCGGGATCTAGAGATACCGCG	AATGAATCGCGGTATGACGGTTCGCGGCGGCGTGACGATAAGCTCGTCATCCAGCTACG
TGTTAGCGGGATCTAGAGATACCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_006280242.1\|1196681_1197911_-\|cytochrome-b/b6	unknown	unknown	gnl\|CDD\|214440
NC_012416.1\|WP_012673359.1\|1200793_1202020_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NC_012416.1\|WP_007548734.1\|1215116_1215395_-\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|259858
NC_012416.1\|WP_012673358.1\|1199803_1200163_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|240265
NC_012416.1\|WP_012673365.1\|1213246_1214365_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NC_012416.1\|WP_007548735.1\|1214717_1215044_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NC_012416.1\|WP_006280687.1\|1200224_1200797_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|378032
NC_012416.1\|WP_039964112.1\|1198290_1199784_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NC_012416.1\|WP_006279640.1\|1209913_1210345_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_012416.1\|WP_012673363.1\|1210349_1210901_-\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|214922
NC_012416.1\|WP_012673364.1\|1210901_1213238_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NC_012416.1\|WP_007550279.1\|1202040_1202793_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_012416.1\|WP_012673361.1\|1205245_1206805_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|237164
NC_012416.1\|WP_012673357.1\|1195554_1196313_-\|cytochrome-c1	unknown	unknown	gnl\|CDD\|366950
NC_012416.1\|WP_012673362.1\|1207108_1209868_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235832
NC_012416.1\|WP_007548562.1\|1192875_1194258_-\|IS66-like-element-ISWen3-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_012416.1\|WP_012673360.1\|1203917_1205261_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_012416.1\|WP_012673356.1\|1194348_1195086_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_012416.1\|WP_010082675.1\|1198015_1198186_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|240265
NC_012416.1\|WP_006279484.1\|1214464_1214743_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_006280242.1\|1196681_1197911_-\|cytochrome-b/b6	gnl\|CDD\|214440	MTH00156, CYTB, cytochrome b; Provisional.	9.60759e-176
NC_012416.1\|WP_012673359.1\|1200793_1202020_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NC_012416.1\|WP_007548734.1\|1215116_1215395_-\|integration-host-factor-subunit-beta	gnl\|CDD\|259858	cd13836, IHF_B, Beta subunit of integration host factor (IHFB). This subfamily consists of the beta subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	4.40055e-22
NC_012416.1\|WP_012673358.1\|1199803_1200163_-\|DnaJ-domain-containing-protein	gnl\|CDD\|240265	PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.	1.10144e-13
NC_012416.1\|WP_012673365.1\|1213246_1214365_-\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	2.06179e-76
NC_012416.1\|WP_007548735.1\|1214717_1215044_-\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	4.8512e-05
NC_012416.1\|WP_006280687.1\|1200224_1200797_+\|NifU-family-protein	gnl\|CDD\|378032	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal. This domain is found at the N-terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.	3.18561e-40
NC_012416.1\|WP_039964112.1\|1198290_1199784_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	8.22378e-32
NC_012416.1\|WP_006279640.1\|1209913_1210345_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	8.74769e-83
NC_012416.1\|WP_012673363.1\|1210349_1210901_-\|OmpH-family-outer-membrane-protein	gnl\|CDD\|214922	smart00935, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	2.79002e-18
NC_012416.1\|WP_012673364.1\|1210901_1213238_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_012416.1\|WP_007550279.1\|1202040_1202793_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.76843e-82
NC_012416.1\|WP_012673361.1\|1205245_1206805_-\|cation:proton-antiporter	gnl\|CDD\|237164	PRK12664, PRK12664, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_012416.1\|WP_012673357.1\|1195554_1196313_-\|cytochrome-c1	gnl\|CDD\|366950	pfam02167, Cytochrom_C1, Cytochrome C1 family.	3.03862e-130
NC_012416.1\|WP_012673362.1\|1207108_1209868_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|235832	PRK06567, PRK06567, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated.	0
NC_012416.1\|WP_007548562.1\|1192875_1194258_-\|IS66-like-element-ISWen3-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	5.24793e-36
NC_012416.1\|WP_012673360.1\|1203917_1205261_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_012416.1\|WP_012673356.1\|1194348_1195086_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	7.62543e-127
NC_012416.1\|WP_010082675.1\|1198015_1198186_-\|DnaJ-domain-containing-protein	gnl\|CDD\|240265	PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.	1.20879e-10
NC_012416.1\|WP_006279484.1\|1214464_1214743_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	1.9304e-21

>NC_012416.1|WP_007550279.1|1202040_1202793_-|5'/3'-nucleotidase-SurE
MIILITNDDGFGSEGIKLLKEIARNFAPEIWIVAPDTDRSGAARSLDYPVKQSIGIKQHSEREFSVSGTPADCVIIALNKVMNKKPDLILSGVNIGSNVGDDICYSGTIGAVMEGAARSIPSIALSQVYHDKIDWHNTKVFAPKVIAKLVKVGWPKNIVMSVNFPATEKVKGVEFAEQGEYNIDGDLTFTENSNGSFSLNWSREHSGSGSINKIKEGFITITPVKLDFTDYDTLNTMKNSCADEFSSIAD
>NC_012416.1|WP_012673359.1|1200793_1202020_+|histidine--tRNA-ligase
MTNQTVRGTKDFLFDEWYKFKHIEQTASRISNLYGFLPAQTPIFEYTEVFTKTLGDSSDIITKEMYSFNDKGGKSITLRPEFTAAIVRLLIEKKLQTPIKLFSTGPAFRYERPQKGRQRQFHQINFEVFGIEDPKADIELISLVQHLLTEFGINKNVKLEINSLGDGETITKYREALILYFTKYQNDLSEDSKNRLIKNPLRILDSKDEKDKSIISDAPKISNYYTKGSSDFFEQILNGLTILDIPYTVNNKLVRGLDYYCHTVFEFVTEDLGAQGAVFAGGRYDNLVSSVGGKHTPAIGFAGGIERIMELINYSPKEERPIYLIPIGREAEKHALTLANELRRNGLYVIYEYSGTLRTRMKKANQANAKAALIFGDEELSSKTLKIKNMNTGEEKIIARDNTIENIY
>NC_012416.1|WP_006280687.1|1200224_1200797_+|NifU-family-protein
MFIQIEETPNPNTLKFLPGFEILNEGETTDFSNANEIKNSKLAANLFQIEHVVRVFFGHDFISVTKLGGINWDTLKVEILTTIMDHFTSGGKALDKEGVNDNNIPDEEFFDKNDIEIVNRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSYHIPEIAGIETTL
>NC_012416.1|WP_012673358.1|1199803_1200163_-|DnaJ-domain-containing-protein
MSFIFFLFLVFIVITFVLPSVVIFFLFLTKKNNMSFMMNSILSKFLNEFSSSRSYTENYTGDNMSKDEALKILGLNPEASQNEINKAYQNLMKLVHPDKGGSEYFAQKLNAARDKLLKK
>NC_012416.1|WP_039964112.1|1198290_1199784_+|N-acetylmuramoyl-L-alanine-amidase
MKIQLSKVNKYLLVLLITVSAFLISGQVSSSSNIENDFQDLQEKLPLLKDQDLLFLDPASALNYGDRAGKKVLMVIVHHTETSTLKGTKDTLNARGLSVHFIVDRDGNITLMVPLEKEAWHAGISYARVKVDSKLEELRKLNNYSVGIEIVNTGLEPFPEEQMRSVKELILYLMERFKIKRDMIFSHSEIGTIVYDPELGYTMRKPDPHKLFDWELLEKNEIGLHISDRINPKDAKHKMGKTLYKAGDRNEGILKLKQRLNRFFYKIEPWNDKKGNVIFPDNNADYSDEFDENFVWVIYQFSIHNLPREIRKDLPLKLEQADIFPEFFSEYSHGISSSYLTFSEKIKSTLQPCLSKVDYENLLSSLAQYENNISPDASTTLMYKIKLYYDSYLRYRIWSSLYKPFKLNVLEELEILKSGVLSLKSLDSSKAAEVSSLIDSFKVDISLEFQGFEKQWFQEFKNAWRQEFIPSLEEQITWTALHEAILEYLEKAKEEIR
>NC_012416.1|WP_010082675.1|1198015_1198186_-|DnaJ-domain-containing-protein
MFRDGAFKVLGIDSGANQNEINKAYQNLMKLVHPDKGGSEYFAQKLNAARDRLLKR
>NC_012416.1|WP_006280242.1|1196681_1197911_-|cytochrome-b/b6
MQEDNKKETIKEEKGILGWIEYRLPIFSFLRHTASYQVPKNLNYAWNFGSLAGIALILQIITGIFLAMHYTPHVDYAFNSVERIMRDVNYGWLIRYTHAVGASLFFMVVYVHIMRGLYYGSYKRPREMVWFIGIFIFFAMMATAFMGYVLPWGQMSFWGATVITNLFSAIPLIGNKIVIWLWGGFSVDNPTLNRFFALHYLLPFVIIALAMLHVIALHRFGSGNPSGVEVKSDKDTIPLYPYYIVKDCITFGLFFVVLFAFVFYAPNYLGHPDNYIEADSMVTPVHIVPEWYFLPFYAMLRSIPDKLTGVLTMFASILVWFLLPWLDKSKVKSGAYRPVFKKFFWVFAINFVLLAWLGGQEVKEPYITMSRLSTLYYFAYFVIVLPLLSKYEKPKEPPKTLSDSVPEMR
>NC_012416.1|WP_012673357.1|1195554_1196313_-|cytochrome-c1
MGSNVFAIFCMLFLSSLISAEEFKSLPNKKIDWKFDGIVGSFDRESIQRGYKVYKEVCAACHSMNRVAFRNLQDVGFSEEDVKQIAASYQVKDGPNDLGEMFDRPGVPSDYFIAPFDTKEAAAASNNGAVPPDLSLIIKARHDGANYVYSLLTGYQNGEHDENDLYFNSYFPTGRLAMAPPLSEGMVEYDGARQATVENMAYDVINFLQWAAEPELERRHKLGLKVVAYFIILTVFFVLTNNKVWSKLYKKK
>NC_012416.1|WP_012673356.1|1194348_1195086_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQVAHFDMEKECELYRIRNAINYHLKSIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRYAPAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRSAAGVTAPPFGLYLVKIDY
>NC_012416.1|WP_007548562.1|1192875_1194258_-|IS66-like-element-ISWen3-family-transposase
MVNLLELCKNLQQKIERLEAKIERLEKENESLKAENKALKIENAELRERLGLSSKNSSIPSSKELYKIKKNKPKSERNIGGQVGHKGSFRANMDADKVVKIELPNTCECGGEIAICEKPYIHQKVDLPEIKPYVVEYQLEHGRCRRCGKRRSSKLPEGVTPDTFGPRVKSIIAAFSGFYKNSKREIASVVNDIFNLNISVGSISNSEHRVASKCKKMYEQIEQEISRSKVLHIDETSHYNKGKLAWCWMFASNTASFVKFTESRGMKVLQNSKFCNRNSLVITDRYAAYNYFADKNRQICWAHLSRDFERLAHSWNIEVKVLGCYLRNVATELFALKKALLKSEIDVLRFVRRARKLRKRTKYYLKEISRLPEAIGASRVAKNVLRSERMMWKFLDDPENIPLTNNHAERQIRHYVVYRKNSYFTQSKRGNTFLERIISLYLTWKQRGLNPFQNLLSIVS
>NC_012416.1|WP_012673360.1|1203917_1205261_-|signal-recognition-particle-protein
MFKSLTESLNSVFSKLRGKSIISEDDFNLAMREIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAVKPPAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRALAAAKNDNYDVLILDTAGRLHIDNNMMNELKAVKEIASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDFYPDRIAKRILSMGDVVSLVEKAAEIVGQEEIDKLQKKVKKGKFDLNDLVGMLKTLSKMDGISNIMKFIPSSFTKKLSSSVPDDNKVKKYIAIINSMTEKERQNPDILNGKRRLRISKGSGTTVTDINLLIKQYNQMSSMVNKFSKVDHSKLKESDLMNMLSRK
>NC_012416.1|WP_012673361.1|1205245_1206805_-|cation:proton-antiporter
MQLYKSSLLLLLTVLIVIVLKLPENLSIAVNWSLPILDFDLSFRTILISFLSVAFLAVLPAQNLTFSEMLSFAAYTISSLYAVLSEHMILVIIFCELMTISAFFIIAASCRDSGPAIRYACVHFFVGVILIAGLALQSTNLIILGLLINCACFPFSFWVVDAYPAASLYGTTYLSLFTTKVSFLVMLLHTYNLWQNCAEMLALVGTITAIYSIIFASLEQNIRRFLCYNVVGQMGLLIIAGGLLSPSEKAIPILILHIIFSLVYQSLLFVVSNSIISRTKTISFNGVGKLMSVEGMCAIIAILTMAAFPGTAGFISKSYITAEIEASGANLEVYKNLYKTLNLLLYLSVGLKFLYYLFIAKSKSKPLAEEGGKMTMIILAFICVIAGNPYLPIYNKPSIFDFVYNTKNILSQFNLLLCTTLLFILLRKLFYPRINFKMDVDWIFRAFIPYIILLFNQLVFKVREMSANVLQNLTNSLTSLYFDNITKLKEVLGYNSVSFVSASSLFLMSILLMLLCLSR
>NC_012416.1|WP_012673362.1|1207108_1209868_-|FAD-dependent-oxidoreductase
MKLNFKISFSNLYTRNGLIKLDETFLNYIKSCDESLFCSLIEARENRIGDSQLIIDLSYLLDEFIAKLFNIKKEIEELKKKHNDFAVIYKCKRLFVQRYALKKYTNVENIDITNKLSHFLTLPTTEKNFAEQVMHWFEDKENHKEEIELAAQYAVWRVKNKQSILFSIHKKIDHENLIPFSKKEVDKVEVLHSNEVKRRYGFDLTSKKVSLNKALDNAHYCIFCHKQSKDSCSKGLINDDNTFKKSPLRVELHGCPLEQKISEMNLVKSEGYSIASLAIVMTDNPLCAATGHRICNDCMNSCIYQKQEPVNVPAIETRILDDVLSLPYGFEIYSLLSRWNPLNFQRSLPRGNTGKNVLVVGLGPAGFNLAHHLLNDGHNVIAIDGLKIEPLIDNFQLIKDFKHEKLSERTAGGFGGVAEYGITSRWDKNYLKIIRLLLERREHFALYGGIRFGGTINVDDAFNLGFDHIALALGSGKPRMIKIKNILARGVRMASDFLMSLQLTGALKFDSIANLQVRMPIVVIGAGLTAIDTATEALAYYPIQVKKFLLRYEILVDKYGKDCVEKDWTEAEREIANEFISHAKLIQAEQELAKKENREAKILELMQSLRGVKVVYRKELKDSPSYRLNSEEVQNALSEGIYFIENLEPVEVVTDKYNHAESIKLIDTKSGEIKRIKARSIFIAAGTEPNTVIATEDKRHFKLSNGYFTQLNSLGKEIDPIFSPKMQNKDRILVYKQGNKTISFFGDLHPSYSGSVVKAMASAKNGYPIISQLLNRVNSFVSVIPVCDVVGQKKNAWSSIEDLANKEFFNRIKEQFAAKVIKVQYLTDKVIEIVIKAPLAAKNFKPGQFFRLQNFETNGRKTNLAMEGIAVTGTEVDKKKGIISTIVLEIGGSTNLCRHLREGEQIILMGPTGRPTEVY
>NC_012416.1|WP_006279640.1|1209913_1210345_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MQFNISDIIKILPHSYPFLLVDRVIECDPGKSIKAIKNVTFNEPFFIGHFPGHPIMPGVLIIESLAQASAICVLGKETIENKVVYLRSIENAKFRKPVTPGDTLILQANIQSVCLGVHKFRCIASVSEEKVAEATISAVLQNK
>NC_012416.1|WP_012673363.1|1210349_1210901_-|OmpH-family-outer-membrane-protein
MKYIQLFISVIALIISLFVGYKFVGYQPQNTKAAIIDSDKVINESLALQNIQQQIKEQNSRLQQEFENELEKLKPSKEEFELLSEEAKKEKTGQFNKHTVNTRDNYAKKMLHLEESYREAVESVFNKIKEVAKRTAEKNNIDLVLFISKKNQVLYSMDEVDLSDVVLKNVNKEVPEFALKGIE
>NC_012416.1|WP_012673364.1|1210901_1213238_-|outer-membrane-protein-assembly-factor-BamA
MKKLFYILVVVFISFPALLVALGTAEKVQVKDVKCIGNERVSNQTIGFYIKLKSGDYINDDDIDSIIKDLYKTKLFASVNAYIDDKKNLVIKIQENPLINKIILKGNKLFNSKELLNNVIQSKSLTIFTETKLQNDLMNLITTYRNNGKVGVKIEYELEKLDSNRVNLIFKIKEGKTSKIKDIRFIGNKNFSENELEQVIKRHSNDIFSKLFRAIFKGENHYSPQYLLINTELLDRFYSSKGYIQNNIQPIVEVDNNNQTELTFLIDEGQQYLFGNNEVNIETEIQDLSLKEEILDFITEENDKIFNRVKINNTVEKINKYLNEKGYIFAKVNPEYAQRDNVVDVTYRVLPGKKIYINQITIDGNDRTLDKVIRSKLSVAEGDAYNISEIQKSRKKLMSSDFFETVKVNSYAVNDNAVNLDLSVKEKNTTSLYLGGGVSLPGGALIKIDLKDRNLFGTGKELSFALEKSQYVFSTDLEFVENNFNDSDTSLGVDVFYEKQDKPNTTFDSCDMGFFTKLSYKVTENLTNSLRYSYKYNHIHMDNKGGQDTDISEIILDRKGEHQISSVGYTLAYNKLDNLYTPKEGYLLRLSQDISGLGGNVNFLKSEFLSFYTHPILSKIDDDITLRFKMAAGHIFSYTDENLNIGQHFFKGGNEIRGFDLSGIGPRAEDKNKSSLGGKTYFNLTQQVDFPLPKLYDYAGIKGSLFVDYATLFGLDDKNKKYEGKYYDSKLVRVSPGFGFSMLSPFGRLRLDFGFPLVKESYDIIPSPNVKFSIEAGI
>NC_012416.1|WP_012673365.1|1213246_1214365_-|RIP-metalloprotease-RseP
MELISNLIHQFSDGIYYFLSFSLIISVIVFVHEYGHYVVAKACKVKVESFSIGFGPEIFGFNDKSGTRWKLSAVPLGGYVKMLGDTNAASVPADQQELTEEEKLYSFHTKPRHKKAAVVFAGPFANMVFAVIAFTIFFSIAGYYRTPPVIENVIEGSAAKQAGLLPGDTITQINEHKIKYFEDISRVIMSNPKTRMEIEYSRNNEKHRTSLTPLIIKDKDVFGNTIERETIGIISVNTLKQSSFLGAVSLSVSETYHTMCLTIKALFHIIVGKRSINEIGGPIKIAKYSGQSAKKGFIMVLYFMAIISANLAAINLLPIPLLDGGHLFHYIIEAVIRRDLSLKCQKYAAIFGALVLFLLMATGMSNDIRDLF
>NC_012416.1|WP_006279484.1|1214464_1214743_+|succinate-dehydrogenase-assembly-factor-2
MTDTSLLRRKLIYRSWHRGCKETDILLGHFALKYLDKFSLSELIEYEKIVDLDDYELYCYITRKTNLPPGLNSQIVNLIACFIEANPLCTQD
>NC_012416.1|WP_007548735.1|1214717_1215044_-|cell-division-protein-ZapA
MQVVEIVIRNNTYKISCESGKKSHLLRLANSFDKLVGSVSQKIGGKGSDALNFLLAALILEDKILELTKRLDEVNQERKKYRNEKRIEYTEVLDKVNKIITNLECIKD
>NC_012416.1|WP_007548734.1|1215116_1215395_-|integration-host-factor-subunit-beta
MATKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYNLKETSHLMLQKFTKNQYFKTYFRSSKKLSDLVNE

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Crispr_ID: NC_012416_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012416_12

1327149-1327254

Orphan

Consensus_repeat	Method
GCGGTATGACGGTTCGCGGCGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012416_12

>merge|NC_012416|12|1327149-1327254|CRISPRCasFinder
GCGGTATGACGGTTCGCGGCGGCATAAAGATAAGTCTCGTCATCCCGCTGCGTATTAGCGGAATCTCTTGTTAGCGCTGCGGCGGTATGACGGTTCGCGGTGGCAT

>NC_012416|12|10|1327149-1327254|CRISPRCasFinder
GCGGTATGACGGTTCGCGGCGGCAT	AAAGATAAGTCTCGTCATCCCGCTGCGTATTAGCGGAATCTCTTGTTAGCGCTGCG
GCGGTATGACGGTTCGCGGTGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_012416.1\|WP_012673399.1\|1336344_1337274_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NC_012416.1\|WP_007548791.1\|1324046_1325123_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NC_012416.1\|WP_007548786.1\|1317692_1318361_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_012673398.1\|1334776_1336324_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NC_012416.1\|WP_012673394.1\|1327501_1328725_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_039963711.1\|1333582_1334290_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NC_012416.1\|WP_007548789.1\|1321846_1322326_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_012416.1\|WP_007548451.1\|1329975_1331121_+\|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372652
NC_012416.1\|WP_007548792.1\|1325439_1326552_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_012416.1\|WP_010963130.1\|1314704_1316423_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NC_012416.1\|WP_007548785.1\|1316428_1317001_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239267
NC_012416.1\|WP_007548788.1\|1320366_1321662_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NC_012416.1\|WP_012673395.1\|1328794_1329310_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NC_012416.1\|WP_012673396.1\|1332408_1333446_-\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_007548790.1\|1322601_1324023_+\|carboxypeptidase	unknown	unknown	gnl\|CDD\|376724
NC_012416.1\|WP_039963709.1\|1334465_1334774_+\|hypothetical-protein	unknown	unknown	unknown
NC_012416.1\|WP_006280380.1\|1331208_1331829_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99789
NC_012416.1\|WP_012673393.1\|1318515_1320354_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NC_012416.1\|WP_015589469.1\|1317109_1317700_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|237574
NC_012416.1\|WP_006280381.1\|1331812_1332364_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270

Protein	Function_ID	Function_description	E-value
NC_012416.1\|WP_012673399.1\|1336344_1337274_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	2.90766e-161
NC_012416.1\|WP_007548791.1\|1324046_1325123_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NC_012416.1\|WP_012673398.1\|1334776_1336324_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	6.36317e-113
NC_012416.1\|WP_039963711.1\|1333582_1334290_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	8.95449e-113
NC_012416.1\|WP_007548789.1\|1321846_1322326_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.33697e-31
NC_012416.1\|WP_007548451.1\|1329975_1331121_+\|SurA-N-terminal-domain-containing-protein	gnl\|CDD\|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	2.13602e-07
NC_012416.1\|WP_007548792.1\|1325439_1326552_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NC_012416.1\|WP_010963130.1\|1314704_1316423_-\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	1.37595e-127
NC_012416.1\|WP_007548785.1\|1316428_1317001_-\|thioredoxin-family-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	3.55435e-74
NC_012416.1\|WP_007548788.1\|1320366_1321662_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	8.29273e-80
NC_012416.1\|WP_012673395.1\|1328794_1329310_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	9.03463e-92
NC_012416.1\|WP_007548790.1\|1322601_1324023_+\|carboxypeptidase	gnl\|CDD\|376724	pfam02074, Peptidase_M32, Carboxypeptidase Taq (M32) metallopeptidase.	5.42027e-86
NC_012416.1\|WP_006280380.1\|1331208_1331829_+\|hypothetical-protein	gnl\|CDD\|99789	cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.	3.54585e-36
NC_012416.1\|WP_012673393.1\|1318515_1320354_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_012416.1\|WP_015589469.1\|1317109_1317700_+\|dTMP-kinase	gnl\|CDD\|237574	PRK13976, PRK13976, dTMP kinase.	1.36677e-121
NC_012416.1\|WP_006280381.1\|1331812_1332364_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	3.23018e-38

>NC_012416.1|WP_007548792.1|1325439_1326552_+|tRNA-2-thiouridine(34)-synthase-MnmA
MLKEFEIEPLLKDKAPHQIKAIVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNANARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGEVKLCRSIDKSKDQSYFLFATTQEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKPDSQDICFVSESYSKTIAKLAPQSVQKGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWLEQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKGEQVIGGGWICS
>NC_012416.1|WP_007548791.1|1324046_1325123_+|rod-shape-determining-protein
MNFVRKLTGKFYSLFTFKGLFASDIAIDLGTANTLVYQKNQGIVLDEPSVVARIKEKGSYVPYAFGKKAKMMLGKTPGEIEAIRPLKDGVIADFKSAEEMLKYFIRSANTKFTVNKPNIIICVPSGSTPVERRAIQDAAESAGANEVFLIEEPMAAAIGAGLPVTEPEGSMIVDIGGGTTEVAIISLGGIVYSRSARVGGDIMDEAIKSYIRENHKLLIGETTAEKIKKSIGSASLPGENNKEGMIIKGRDLVSGMPKEMLLSEYQVAESLIEPVHQIISAIKTALESTPPELSSDIVDRGIVLSGGGGLLRNLGKVISETTKLPVRVADDPLCCVALGSGKVLENMDYFGHVLFKQD
>NC_012416.1|WP_007548790.1|1322601_1324023_+|carboxypeptidase
MQSYKFLEEVLYRVKNIENTLKVLNQSQLNIEDKVEQMSLLEEIRHEIISHDAIKESLADALGNKKSANTQQLKLIERIHKSNSAVPIDLVKSLSKAKVECQDLWKLSHSETSNLEKLKERFTDLITLIREVASIKSQQLKCSKYDSLLADYDSDITEKNIREVFPKVGKFFSENVDKIIEKQKKDKVTNIQKVATQKQIELGSLCLQQMGIALNEIRTSYYYPIDYDESDFCYGLFSLLRHSGYAIYQKCLAQNSISSPITRHVMYETQGLFMERMIGTSREFIEFIQPHIKEKFAIKGKTNEKVSSVENLYLIFNEINLSSFLKNADEFSLLAHIMLRTRLEQDIINGTLEVKDLHDAWLEGMKHYKIPVKAENELNTYFQDEYWASGVMGYFPIKIIALIAAVQIFSFVKKNHYESLSAIIKGDFSLLISWLSQNVYSAKCGLELLKKVTGKGLDVECVTYYLSEKYNLS
>NC_012416.1|WP_007548789.1|1321846_1322326_-|OmpA-family-protein
MWSRLVIMCCFCLLLTGVSSCPKKGANTTNKINSVVKQIGNKRVFFGYDESSIAEVSADALLDVMEVLQDNPDAKVTLTGHTDNRGSHEYNLALGARRADAAKKFMVSCTPYIENRIKTASKGETEPLVNVKDDSRNSKYEKEHAKNRRVEFSFSGIKK
>NC_012416.1|WP_007548788.1|1320366_1321662_-|tRNA-lysidine(34)-synthetase-TilS
MELELLFQNVVNSFAFYNNQVAVAVSGGVDSIVLLHLMTNWAKKNKLSLPTALTVNHGLRPESQKEADFVVSYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSNVNCTLSGCKIRKHGENILIIRESSKIQEITLNLPLNEPTQWDNRFSCTILGNQECSVIIAPLKKTQKVPEFLKDYNCCPEVFYSLPVVLKDGKVLAYPDVNYNGKNTNDDKVQCIINSTIKQNLVSLISI
>NC_012416.1|WP_012673393.1|1318515_1320354_-|ATP-dependent-zinc-metalloprotease-FtsH
MKKFLEGLLIWLVIIVLISVAYIQFSGNVGKSKTIIPFSEFLTRLEDNDVENIVIKNQSIEGKFRDGSSFNSSGVIYSDLIKNLHDRKVRFSFSTGDSAMNVIGGLLISWVPTFIFIGFLLFFLKQTQAGGNRTISFGKSRARLMTSGKKVTFDDVAGIDEAKEELVEIVDFLKQRQKFQILGGKIPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFDQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDPALLRPGRFDRQITISLPDINGREKILNTHIKKISIAPDVNVKTVARGTPGFSGADLANLVNESALIAARRNKKIVTMDDFEYARDKVMMGVERRSLIMTEEEKRLTAYHEAGHAMIAVNMPASDPIHKATIIPRGRALGLVMRLPETDRVSLTREKMLADITVAMGGRVAEELIFGYDKVTSGASSDIKQASDLSRAMVTKWGMSDKIGPIYHNREQTIHGSEIISEDTLKLIDEEVKKVVSSCYEKAKDILTKHKKGLDLIAENLLEFETLTGDEIKDILNGKKIVREENEKNEKIKKSSLYES
>NC_012416.1|WP_007548786.1|1317692_1318361_-|hypothetical-protein
MIDIASIGVSTVIDQNYRRKAQLCLSGLFVTVSIATVTWFIFPASQNVLAPFLLPAMFLLFTLSMGYYMFIFSCEEKSLVKNVLGMVEPAESVKRVHCQENIKSLLAEVRSTTKDRFRNVLVNLCFEDRSKAHKLALYVKEIDNIVSSIKNKDLLDHFDQFFTITEVSNKKNRSELMNLARAYKMISEEDPDKIQDFLATQTKSYSYEIMLPEIDNFLSQAR
>NC_012416.1|WP_015589469.1|1317109_1317700_+|dTMP-kinase
MFITFEGIDGSGKTTQSKLLANHFKQIHGENNVVLTREPGGTNFAEKIRGVLLTNNIDPISELLLLISMRREHMKKLILPALAEGKIVICDRFIDSTIAYQGYGLSVDLGLIRDLHKLVEIKCPDITFILDIDVKVGLNRAKDKNKYEEMDVNFYNKVRKGFQEIAIKEPVRCSVITGIETKNDNHVHNEIIDKIT
>NC_012416.1|WP_007548785.1|1316428_1317001_-|thioredoxin-family-protein
MVALNTPKVDFSFTAKDFNLLGVDNKYYTLSDCCGKNGLIVMFICNHCPYVQSIISNLVSDVDQLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKENKFTFPYLIDSTQKIAKEYGAVCTPDFFGFNSNLNLCYRGRFNDAKKEKVQSYEVGSSDLFQAMKFIAETGNSPIDQKSSIGCSIKWSNSTG
>NC_012416.1|WP_010963130.1|1314704_1316423_-|cation:proton-antiporter
MHSGSQHLFDIIILLSAAVFIVIAFWKMNISPVLGYFVAGAVIGSHGFNLIHSAEAMDNLAEFGVVFLLFIIGLELTFERLIAMRIHVFGFGSLQVIVTMVAIWCIALAFGVNTNIATVIGGGLALSSTAIVLQVLQEKGSQASQVGRLSIAVLLMQDFAVVPLIVLVPLLTGNSEHSLISSLAGSLVQAAIALVLIFITGRLLLRPLFSVIAKMESNEIFISTTLLIVLGAAFITEQFHLSLALGAFVAGLLVAETEYRHSVEHAVLPFKDLFLGLFFMTVGMSINTELLLNKLPLITLLSIILIVLKTSIIYILCRFFGFKSAPAIQAGLLLSQGGEFAFILFRLADELNVLPSEIAQVLMMVTTVTMAFTPLLSGLGDWIANSFSTEKTILDDEAVETDTQDLYNHVIVAGFGRVGYMVTKMLTAEHLSYVVVDIQSKIVKEGKSDSFPIYLGDVTRCEILKSVGIERAQALVISIKNEVTIKKVVSLVAANFPHVNIVIRLPDLSNVEVYRDLGASKIIPETSEIGLQLGGAALSLSGISESGVTSLKSRFRKGNYSMLKDLGSDKDE
>NC_012416.1|WP_012673394.1|1327501_1328725_+|hypothetical-protein
MIKEIEELIKIVGKGNLLETLFIFLGSFQHADLGRFMDHRNHFGLSEFIRKKEEPLDKYFNLKFSLQGLFLIYAQAYRILSENNNLNTKDVIDKIYEVIKGSELNEYINEVVDGRKLDLLNILANPKREPIFKTEEDFENKVLIGLRKLLSEGNTLNKYDREFALNKCVISSYYSIHDIKADKDIALFFSLGGHYKELSSSNKTVKREVLEICENQLIESYIMFLAGKLHMIGLSSRDKYTIDHENVDRQEKALKMDGLIYPINTKNTLEQLLKNQNSDEFEQLITSPDNIYYSVLQEENECRPNPITSKKKEKDHKNTVCKLILGMFVLSVGLYVADYFFMEQKLFNPIKGVLPQDNFVNLVIAAVLTIVIVYALFQLLKPPQEPPLSTVNKMMNENLGPLHAKQA
>NC_012416.1|WP_012673395.1|1328794_1329310_+|inorganic-diphosphatase
MDLSKITAGPNAVNVVIEISANAEPVKYEFNKEFGLLQVDRFLSTSMTYPCNYGFIPNTCAGDGDPVDVLVLTQFPLASSVLISVRPIGALLTKDEKGEDEKILAVPVSSVDSYYDNIKDYSDLSKSLLDKITHFFSHYKDLEKGKTVAVGEWVGVEEAKQIVASSIKSGN
>NC_012416.1|WP_007548451.1|1329975_1331121_+|SurA-N-terminal-domain-containing-protein
MYKILILLLIVLPLRLLATEIEIVADVNGEPISNLDIEKRINFINSLFGTQSVNQKEAKPQVLRELIDEIVIINEAQRLNIKLSNEELDNAIMLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLLWSKIIEVRIVPFINISDKEINDVKRQTEKPNYLITFQEFIIPDQKDKDVYGIAEDLVKKLRNSNNPESPIKMRKATVNLSQLKGKLKSVLEGLETSDIAGPFSFSEGYSVIKVIDKVQLNHALLESTLKLKQIVVEGSESLLDNLKEQKVNCLNFDKLADNFKLPNAKEFEIKMRDLNPDLQILFSKTSVNEIVELRENGTAKLMMLCDIKSNVAGIEAIKQKMYQQKIMIQSNLLLDDMRKNAAISYRYS
>NC_012416.1|WP_006280380.1|1331208_1331829_+|hypothetical-protein
MKNIMLIGGGVGNAVLFSIGKACLENNNKVLYFAGYKKLSDVFKRALIERASNAVVWVCEEGLIETSRDQDKSFHGNIVDAIVSYQQGRLGINLNVIDKIITIGSDKMMKAVNEARKTILKPYLKSSHIAISSVNSPMQCMMKEICAQCVQQHINKETGERSFVYSCSNQDQDMEFIDFDFLSERLKQNSLQEKLTAKWIDHVQRY
>NC_012416.1|WP_006280381.1|1331812_1332364_+|5-formyltetrahydrofolate-cyclo-ligase
MFKDIKQHKKEIREQYRAIRKDIDESYSSYAANSLINLFNQNLSYVKGKTIAAYIPMDGEIDVVPLMHSLLDLDYKVAIPNKNKLLKFEEWNKTNEDVIPDTIITPVIAFDDHFNRLGFGGGWYDTMIKKLRPLGKIFIGVAYEKQYCKNLPVEQHDQKLDIIITEMCVRFESGLLKKVDKKE
>NC_012416.1|WP_012673396.1|1332408_1333446_-|hypothetical-protein
MESSNSMFFDTDYPELRKAISDIIESIAQSSQEGKKELFTTLSEQVKGMNLKDLGLAINDQGLQKKVNKELFIKLIEEALKDLTSENVDSKIIEEALKSVNQQAISNVINNNKGPLDNLVNYFKSASANKKIGIASAVMVLGAAFSPLIVLATLIALVAIGTRYVGIGIGRAGEKIKEGAIETGKAVKSSYKDLIDKLPTVQARENNFSRLRTNVLETIANISLKDNKNVDTKKGFDDGKKILEMLQNEGQRSAIQELVKNGTIQNFSKDDMSRLLEKGLSTHVADMKALNDLINKFQPVIMAIGSDIKEVEQKVNEKAQEMKPNSHLGISSAARVSEGGITGPS
>NC_012416.1|WP_039963711.1|1333582_1334290_+|isoprenoid-biosynthesis-glyoxalase-ElbB
MGEKKLKAAVVLSGCGHLDGVEVREAVLSLLVLDQQEVDVKCFAPDINITQVMNHRTKEATKEKRNVLVEAARIARGEIYDLKEAKAENFDMLVVPGGYGVAKNLSDLAESKDMVTVMPEFERLVSEFFVTKKPIGAICISPAIIVSILSSKIGKEESKVKVTIGDDREQLIERLGGEHIKCDTELSIEDEEHNVFSCSAYMRSDESTYSVYQGIKHMIDSMVKKINKKTKQPFL
>NC_012416.1|WP_039963709.1|1334465_1334774_+|hypothetical-protein
MSDLFYIETTCCVDGQCDVYTGEVSFNDVMLGKFSLNSCSGKEAMINLDIITFDINIAIDGQNGKTIKKDLKGLEFVTKDDGSWYINKDFGNDKFEIIVKQS
>NC_012416.1|WP_012673398.1|1334776_1336324_-|penicillin-binding-protein-2
MQALLKNKLRSLCFIVPLFIFYIIIIFRIFSLTFDQLTTSENFRKDNIVHKQPDILDRNGVVIATNVPTTSLYIDATKVKNPESIAAQLCSTLHDLEYKNLYRVLTSEKKFAWIKRHLTPKELLAIKNAGVPGVNFYDDIKRIYPHSNLFSHVLGYTDIDGNGIAGVEAYISKNNEQEKPIILSLDTRVQSIVHEELTKAVSRYQALGGVGIVLNVRNSEVISMVSLPDFNPNLQNKAEDVQKFNRASLGVYEMGSVLKYFTIAAALDANATKTSDLYDVSTPITIGKYKIQDFHKSKIPKITVQDIFVKSSNIGAAKIAVKLGIEKQVEYFKAMKLFSPLKIEIPEKSTPIIPDKWSENTLITASYGYGIAVTPIHLAQTAAALINNGIFHNATLMLNKRSIGEQIISRRTSREMRKLLRAAVTDGTGRKAKIKAYSIGGKTGSAEKVVDGKYSKDANIASFIGVLTMLDPRYIVLIAIDEPQGMHHTGGVIAAPIVRNIINRVAPILNVTPEM
>NC_012416.1|WP_012673399.1|1336344_1337274_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MEIILAEPRGFCAGVKRAVDILAITLEKYKNERQVYVLHEIVHNKYIVEDFKKQGVVFVSSIKEIEDNGGILIFSAHGVSKNIEDEAKRKGIQVIDATCPLVNKVHKEAKRYENSGKELILIGHENHPEVKGIRGRVNNPITLVQTLQDVYDLKVKDPDNLSYVTQTTLSIDDTRDIIAALKLRFPGITGPDLKDICYATQNRQNAVKKLAEIVDMVLVVGSKNSSNSNRLLDLCTARGKRAYLIDNYRCVNKSWFQGVEKIGITAGASAPDILVDELMDYLKVSMNVEVSVMPGGIIENVQFKIPNLV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_012416_6	6.4\|419202\|45\|NC_012416\|CRT	419202-419246	45	NC_012416.1	1327296-1327340	0	1.0
NC_012416_6	6.5\|419291\|33\|NC_012416\|CRT	419291-419323	33	NC_012416.1	374628-374660	1	0.97
NC_012416_6	6.5\|419291\|33\|NC_012416\|CRT	419291-419323	33	NC_012416.1	1013422-1013454	1	0.97
NC_012416_8	8.1\|852801\|51\|NC_012416\|CRISPRCasFinder	852801-852851	51	NC_012416.1	711611-711661	1	0.98
NC_012416_8	8.1\|852801\|51\|NC_012416\|CRISPRCasFinder	852801-852851	51	NC_012416.1	711723-711773	1	0.98
NC_012416_8	8.1\|852801\|51\|NC_012416\|CRISPRCasFinder	852801-852851	51	NC_012416.1	1203582-1203632	1	0.98
NC_012416_1	1.1\|51725\|57\|NC_012416\|CRISPRCasFinder	51725-51781	57	NC_012416.1	936845-936901	2	0.965

1. spacer 6.4|419202|45|NC_012416|CRT matches to position: 1327296-1327340, mismatch: 0, identity: 1.0

atgttgagagataccgcgaatgaatcgcggtatgacggtgtagat	CRISPR spacer
atgttgagagataccgcgaatgaatcgcggtatgacggtgtagat	Protospacer
*********************************************

2. spacer 6.5|419291|33|NC_012416|CRT matches to position: 374628-374660, mismatch: 1, identity: 0.97

agagataccgcggcggtatgacggttcgtggcg	CRISPR spacer
agagataccgcggcggtatgacggttcgcggcg	Protospacer
****************************.****

3. spacer 6.5|419291|33|NC_012416|CRT matches to position: 1013422-1013454, mismatch: 1, identity: 0.97

agagataccgcggcggtatgacggttcgtggcg	CRISPR spacer
agagataccgcggcggtatgacggttcgcggcg	Protospacer
****************************.****

4. spacer 8.1|852801|51|NC_012416|CRISPRCasFinder matches to position: 711611-711661, mismatch: 1, identity: 0.98

agataccgcgaatgaatcgcggtatgacggtgtaatgacggttaagtaatt	CRISPR spacer
agataccgcgaatgaatcgcggtatgacggtgtaatgatggttaagtaatt	Protospacer
**************************************.************

5. spacer 8.1|852801|51|NC_012416|CRISPRCasFinder matches to position: 711723-711773, mismatch: 1, identity: 0.98

agataccgcgaatgaatcgcggtatgacggtgtaatgacggttaagtaatt	CRISPR spacer
agataccgcgaatgaatcgcggtatgacggtgtaatgatggttaagtaatt	Protospacer
**************************************.************

6. spacer 8.1|852801|51|NC_012416|CRISPRCasFinder matches to position: 1203582-1203632, mismatch: 1, identity: 0.98

agataccgcgaatgaatcgcggtatgacggtgtaatgacggttaagtaatt	CRISPR spacer
agataccgcgaatgaatcgcggtatgacggtgtaatgatggttaagtaatt	Protospacer
**************************************.************

7. spacer 1.1|51725|57|NC_012416|CRISPRCasFinder matches to position: 936845-936901, mismatch: 2, identity: 0.965

ctgagataccgcgaatgaatcgcggtatgacggttcgtggcggcgtgacgataagct	CRISPR spacer
ctgagataccgcgaatgaatcgcggtatgacggttcgcggcggcatgacgataagct	Protospacer
*************************************.******.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_012416_6	6.1\|418962\|36\|NC_012416\|CRT	418962-418997	36	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19843-19878	5	0.861
NC_012416_6	6.3\|419122\|36\|NC_012416\|CRT	419122-419157	36	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19843-19878	5	0.861
NC_012416_7	7.1\|842166\|57\|NC_012416\|CRT	842166-842222	57	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19772-19828	11	0.807

1. spacer 6.1|418962|36|NC_012416|CRT matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 5, identity: 0.861

cttgttagcgccgcggcggtatgacggttcgtggca	CRISPR spacer
cgtgttagcgccgcggcggtatgacgattcgcagcg	Protospacer
* ************************.****..**.

2. spacer 6.3|419122|36|NC_012416|CRT matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 5, identity: 0.861

cttgttagcgccgcggcggtatgacggttcgtggca	CRISPR spacer
cgtgttagcgccgcggcggtatgacgattcgcagcg	Protospacer
* ************************.****..**.

3. spacer 7.1|842166|57|NC_012416|CRT matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 11, identity: 0.807

gatctatgccgagataccgcggcggtatgacggttcgcggtggcatgacgataagct	CRISPR spacer
tagcggctaagagataccgtgacggtatgacggttcgcggtggcatgacgataagcc	Protospacer
 * * ..   *********.*.**********************************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29338 : 133736

Shigella_phage(15.38%)

tRNA,head,tail,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012673040.1\|29338_30301_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_012673041.1\|30306_32229_-	hypothetical protein	NA	NA	NA	NA
WP_041582627.1\|32372_33650_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-99	50.0
WP_012673043.1\|33684_34956_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_007548938.1\|35592_37758_-	hypothetical protein	NA	NA	NA	NA
WP_006280296.1\|38171_39038_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_006280297.1\|39341_40268_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	4.3e-32	30.6
WP_006279727.1\|40257_40611_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_007548937.1\|40652_41915_-	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_012673044.1\|41920_43555_-	ribonuclease J	NA	NA	NA	NA
WP_012673045.1\|43763_44882_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	2.4e-29	33.2
WP_012673046.1\|45108_46053_-	hypothetical protein	NA	NA	NA	NA
WP_006280163.1\|49327_49969_+	dioxygenase	NA	NA	NA	NA
WP_173862876.1\|50065_51568_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	7.7e-55	39.0
WP_006279883.1\|52262_53450_+	MFS transporter	NA	NA	NA	NA
WP_007549337.1\|53510_53816_+	integration host factor subunit alpha	NA	NA	NA	NA
WP_007549338.1\|53815_54142_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_007549339.1\|54187_54784_+	M23 family metallopeptidase	A0A7K9	Microcystis_virus	9.7e-09	36.4
WP_012673049.1\|54796_57313_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	4.3e-159	37.9
WP_012673050.1\|57431_58037_+	membrane protein	NA	NA	NA	NA
WP_094189578.1\|58617_59449_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_084741697.1\|59474_59639_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-06	48.1
WP_010082071.1\|59631_59793_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_144078574.1\|59796_60231_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.1e-09	36.4
WP_084741692.1\|60215_60518_-\|transposase	transposase	NA	NA	NA	NA
WP_007548414.1\|60654_61362_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_006279876.1\|61354_61666_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_007548415.1\|61812_62268_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_010082596.1\|62278_62737_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_006279873.1\|62866_64090_+	TolC family protein	NA	NA	NA	NA
WP_006280458.1\|64109_64685_+	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_012673052.1\|64761_65340_+	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_121692676.1\|66133_68224_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007548422.1\|68587_68899_+	hypothetical protein	NA	NA	NA	NA
WP_007548424.1\|69035_69275_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_094189573.1\|69290_70349_-\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	5.3e-167	81.8
WP_007548427.1\|70914_71325_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_007548428.1\|71299_71689_+	hypothetical protein	NA	NA	NA	NA
WP_039963707.1\|71754_72540_+	hypothetical protein	NA	NA	NA	NA
WP_084741697.1\|72941_73106_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-06	48.1
WP_010082071.1\|73098_73260_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_094189578.1\|73492_74324_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_147737881.1\|75372_75723_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.6e-06	40.0
WP_084741699.1\|75707_76010_-\|transposase	transposase	NA	NA	NA	NA
WP_007548296.1\|76476_76887_+	hypothetical protein	NA	NA	NA	NA
WP_007548295.1\|76894_77899_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_012673055.1\|78625_79774_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_012673056.1\|80216_81179_+\|transposase	IS481-like element ISWpi4 family transposase	NA	NA	NA	NA
WP_006280288.1\|81181_81730_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010962412.1\|81729_82341_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_007548287.1\|82486_82786_+	ETC complex I subunit	NA	NA	NA	NA
WP_007548286.1\|83078_83390_-	hypothetical protein	NA	NA	NA	NA
WP_007548285.1\|83386_84268_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_007548284.1\|84486_85734_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.8e-50	31.6
WP_012673057.1\|85761_86544_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_007548282.1\|86676_87915_-	cell division protein FtsA	NA	NA	NA	NA
WP_006280370.1\|88053_88593_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.4e-22	42.5
WP_007548281.1\|88582_89395_+	uracil-DNA glycosylase	A0A127AW33	Bacillus_phage	1.5e-12	30.8
WP_006279675.1\|90313_90526_+	hypothetical protein	NA	NA	NA	NA
WP_039963653.1\|90531_92580_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_006280461.1\|92563_93589_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_006280460.1\|93581_94577_+	porphobilinogen synthase	NA	NA	NA	NA
WP_007548278.1\|94723_95482_+	hypothetical protein	NA	NA	NA	NA
WP_007548277.1\|95526_96366_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_006280148.1\|96369_98487_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_006280147.1\|98470_100288_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_006280146.1\|100613_101387_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-27	34.9
WP_006013840.1\|101515_101683_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_007548270.1\|101849_102506_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_007549323.1\|102596_103253_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_012673059.1\|103245_104619_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	1.3e-48	30.3
WP_012673061.1\|105129_108414_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007548988.1\|108425_109847_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_007548562.1\|110404_111787_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_007548332.1\|112683_113706_+\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_007548834.1\|114086_114554_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_012673062.1\|114598_115087_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_006279354.1\|115087_115915_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_006280356.1\|115962_116622_-	TenA family transcriptional regulator	NA	NA	NA	NA
WP_012673063.1\|116666_117350_-	TenA family protein	NA	NA	NA	NA
WP_007548829.1\|117476_118649_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.6e-90	47.3
WP_006279564.1\|118792_119062_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_006279565.1\|119072_119375_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_012673064.1\|120588_121881_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7P8	Chrysochromulina_ericina_virus	1.6e-24	32.2
WP_012673065.1\|121881_122925_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	6.4e-32	36.8
WP_006280251.1\|123071_124802_+	hypothetical protein	NA	NA	NA	NA
WP_012673066.1\|124983_125580_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.4e-21	31.1
WP_006280249.1\|125637_126228_+	CvpA family protein	NA	NA	NA	NA
WP_006279412.1\|126705_127143_+	hypothetical protein	NA	NA	NA	NA
WP_006279415.1\|127343_127565_+	hypothetical protein	NA	NA	NA	NA
WP_007550684.1\|127555_127831_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012673067.1\|128002_128278_+	YggT family protein	NA	NA	NA	NA
WP_006280290.1\|128282_130397_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.1e-74	43.4
WP_007548400.1\|130578_131022_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.5e-27	75.6
WP_019236827.1\|131276_131420_+	hypothetical protein	NA	NA	NA	NA
WP_007548398.1\|131457_133005_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.6e-133	50.4
WP_007548396.1\|133001_133736_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.0e-52	53.1

DBSCAN-SWA_2

138334 : 273410

114

Shigella_phage(20.69%)

tRNA,integrase,transposase

attL 200212:200254|attR 258473:259954

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084741701.1\|138334_138628_+\|transposase	transposase	NA	NA	NA	NA
WP_084741703.1\|138699_139059_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.0e-10	41.0
WP_153801314.1\|139058_139223_+	hypothetical protein	NA	NA	NA	NA
WP_081600759.1\|139212_139377_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_041582600.1\|140396_142784_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	3.3e-108	34.3
WP_006280143.1\|143000_143609_-	SCO family protein	NA	NA	NA	NA
WP_006280142.1\|143653_144349_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-38	37.9
WP_006280141.1\|144373_145024_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_006279761.1\|145188_145692_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_012673070.1\|145706_148301_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_012673071.1\|148435_151576_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_007548372.1\|153119_153464_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_007548371.1\|153479_153794_-	multidrug transporter	NA	NA	NA	NA
WP_012673073.1\|153893_155000_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.5e-42	34.2
WP_006280710.1\|155777_156536_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_012673074.1\|156516_157470_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_007548361.1\|157549_158335_-	hypothetical protein	NA	NA	NA	NA
WP_007548360.1\|158528_158903_-	ferredoxin family protein	NA	NA	NA	NA
WP_006280136.1\|158964_160053_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.8e-27	34.9
WP_012673075.1\|160266_160995_-	triosephosphate isomerase	NA	NA	NA	NA
WP_012673076.1\|161170_161989_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_012673077.1\|162020_163514_+	IMP dehydrogenase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	9.7e-42	41.5
WP_007548352.1\|163902_164049_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080717647.1\|164304_164475_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_012673078.1\|164722_166231_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_006280349.1\|166227_167013_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_007548348.1\|167287_168574_+	hypothetical protein	NA	NA	NA	NA
WP_012673079.1\|169631_170804_+	porin	NA	NA	NA	NA
WP_081600753.1\|170974_171277_+\|transposase	transposase	NA	NA	NA	NA
WP_144078574.1\|171261_171696_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.1e-09	36.4
WP_010082071.1\|171699_171861_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_084741697.1\|171853_172018_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-06	48.1
WP_012673080.1\|172109_173513_-	nitronate monooxygenase	NA	NA	NA	NA
WP_006280338.1\|173862_174450_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_006279667.1\|174761_175940_-	ribonuclease D	A0A0M5KJQ5	Mollivirus	1.0e-06	29.9
WP_007548550.1\|176073_176472_+	hypothetical protein	NA	NA	NA	NA
WP_039963806.1\|177461_179972_-	DNA mismatch repair protein MutS	A0A2H4UUR2	Bodo_saltans_virus	4.8e-33	22.6
WP_006280279.1\|180246_181053_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_006279522.1\|181238_181421_-	hypothetical protein	NA	NA	NA	NA
WP_012673082.1\|181818_182532_+	membrane protein	A0A0R6PEZ3	Moraxella_phage	2.5e-27	35.6
WP_010962427.1\|182724_184287_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_006280151.1\|185273_187058_-	ribonucleoside-diphosphate reductase subunit alpha	A0A0K1LMZ5	Caulobacter_phage	1.3e-202	59.9
WP_012673083.1\|187116_188193_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_007548562.1\|191535_192918_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_012673084.1\|193042_193306_-	hypothetical protein	NA	NA	NA	NA
WP_006279896.1\|193391_193529_-	hypothetical protein	NA	NA	NA	NA
WP_006279898.1\|193734_193869_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_012673085.1\|193975_195064_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_012673086.1\|195165_196593_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_007549649.1\|196605_196950_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_081600779.1\|197074_197365_-\|transposase	transposase	NA	NA	NA	NA
WP_007549647.1\|197303_197630_-\|transposase	transposase	NA	NA	NA	NA
WP_007552972.1\|197749_198019_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007548562.1\|198376_199759_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_007549659.1\|199995_200214_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
200212:200254	attL	NA	NA	NA	NA
WP_080717647.1\|200390_200561_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
200212:200254	attL	NA	NA	NA	NA
WP_007548352.1\|200816_200963_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_006280116.1\|201360_202071_-	class II aldolase/adducin family protein	NA	NA	NA	NA
201317:201359	attR	NA	NA	NA	NA
WP_010082279.1\|202351_202975_+	AAA family ATPase	NA	NA	NA	NA
201317:201359	attR	NA	NA	NA	NA
WP_007548508.1\|202969_203545_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_006280118.1\|203544_204675_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_006280119.1\|204803_205793_-	ribonucleotide-diphosphate reductase subunit beta	A0A1B1IW95	uncultured_Mediterranean_phage	6.6e-103	54.5
WP_006279908.1\|205924_206263_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_121692627.1\|206483_206585_+	hypothetical protein	NA	NA	NA	NA
WP_006280120.1\|206625_207246_-	hypothetical protein	NA	NA	NA	NA
WP_007548500.1\|208441_208582_+	hypothetical protein	NA	NA	NA	NA
WP_006280421.1\|208648_209371_+	DNA repair protein RecO	NA	NA	NA	NA
WP_007548497.1\|209724_211101_-	PleD family two-component system response regulator	G3MA91	Bacillus_virus	1.3e-21	34.6
WP_012673088.1\|211072_211369_-	hypothetical protein	NA	NA	NA	NA
WP_012673089.1\|211373_216107_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_039963776.1\|216134_218696_-	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	3.6e-121	33.8
WP_173862872.1\|219084_219228_-	hypothetical protein	NA	NA	NA	NA
WP_012673091.1\|219467_219911_-\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-28	78.0
WP_012673092.1\|219973_221803_-	translational GTPase TypA	E4ZFJ7	Streptococcus_phage	8.0e-22	40.8
WP_006280091.1\|221900_222497_-	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_006280092.1\|222500_223685_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_012673093.1\|223883_225209_-	dihydroorotase	NA	NA	NA	NA
WP_012673094.1\|225323_226565_-	hypothetical protein	NA	NA	NA	NA
WP_006280284.1\|226876_228970_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_012673095.1\|229143_231069_+	hypothetical protein	Q9JML0	Wolbachia_phage	9.1e-16	26.9
WP_006280410.1\|231269_232148_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	9.4e-45	40.3
WP_012673096.1\|232435_233818_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_144078579.1\|234159_234450_-	hypothetical protein	NA	NA	NA	NA
WP_012673097.1\|234563_236264_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_006279647.1\|236241_236670_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-13	35.0
WP_007549265.1\|236669_237152_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_146038234.1\|237225_237414_+	hypothetical protein	NA	NA	NA	NA
WP_007548562.1\|237445_238828_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_173862874.1\|239052_239670_-	hypothetical protein	NA	NA	NA	NA
WP_012673099.1\|239748_240210_-	dUTP diphosphatase	V5L6Y7	Insectomime_virus	2.1e-35	54.4
WP_012673100.1\|240912_241824_-	acetylglutamate kinase	NA	NA	NA	NA
WP_006280523.1\|241828_242422_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_007548640.1\|242520_243600_+	peptide chain release factor 1	NA	NA	NA	NA
WP_012673102.1\|243627_244791_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	1.6e-20	26.4
WP_006279391.1\|245255_246185_+	AEC family transporter	NA	NA	NA	NA
WP_007548352.1\|246719_246866_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080717647.1\|247121_247292_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_007548651.1\|247548_248880_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_012673103.1\|251410_252880_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_010082135.1\|253269_254496_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_012673104.1\|254562_255492_+	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_007548657.1\|255499_257002_-	secretion system protein	NA	NA	NA	NA
WP_007548562.1\|257071_258454_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_012673105.1\|258611_259976_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_006280330.1\|260845_261520_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.4e-18	51.7
WP_012673106.1\|261546_262971_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_012673107.1\|262975_264250_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.0e-137	61.0
WP_006280016.1\|264237_265260_+	GTPase ObgE	NA	NA	NA	NA
WP_049749677.1\|265682_267119_+	class II fumarate hydratase	NA	NA	NA	NA
WP_006280013.1\|268762_269086_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_007549187.1\|269101_269320_-	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_007549186.1\|269398_270721_-	malate dehydrogenase	NA	NA	NA	NA
WP_012673109.1\|270855_271398_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_007548332.1\|272387_273410_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

291503 : 364654

Tupanvirus(18.75%)

tRNA,protease,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049749678.1\|291503_292235_-\|protease	26S protease regulatory subunit	M4QNJ1	Ostreococcus_lucimarinus_virus	1.0e-23	39.7
WP_049749679.1\|292238_292904_-	hypothetical protein	NA	NA	NA	NA
WP_012673116.1\|293041_295513_-\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	3.9e-253	54.5
WP_012673117.1\|295762_297034_+	hypothetical protein	NA	NA	NA	NA
WP_007548882.1\|297074_297590_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_007548880.1\|297734_298055_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_007548879.1\|298054_299659_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	8.6e-153	50.8
WP_012673118.1\|299684_300092_+	nucleoside deaminase	NA	NA	NA	NA
WP_147435549.1\|300163_301375_-	hypothetical protein	NA	NA	NA	NA
WP_007548876.1\|301440_302916_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007548874.1\|303165_304431_-	MFS transporter	NA	NA	NA	NA
WP_012673121.1\|304560_305145_+	hypothetical protein	NA	NA	NA	NA
WP_167494748.1\|305328_305469_+	hypothetical protein	NA	NA	NA	NA
WP_012673122.1\|305478_306576_+	AAA family ATPase	E5ESM9	Bathycoccus_sp._RCC1105_virus	1.9e-42	42.7
WP_012673123.1\|306816_307815_+	pyruvate dehydrogenase complex E1 component subunit beta	A0A0K0KW14	Prochlorococcus_phage	2.0e-11	29.5
WP_007550935.1\|307790_308165_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_007548562.1\|308552_309935_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_007549283.1\|310501_312298_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	1.3e-19	41.5
WP_007549284.1\|312377_313781_-	malonyl-CoA decarboxylase	NA	NA	NA	NA
WP_007549291.1\|314768_315146_+	hypothetical protein	NA	NA	NA	NA
WP_006280514.1\|315397_315931_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	1.8e-30	41.1
WP_041582603.1\|316066_317806_+	hypothetical protein	NA	NA	NA	NA
WP_012673124.1\|319262_320435_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A2L0UZ92	Agrobacterium_phage	6.2e-52	36.4
WP_012673125.1\|320518_321463_-	hypothetical protein	NA	NA	NA	NA
WP_012673126.1\|321581_322676_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_012673127.1\|322778_323981_+	hypothetical protein	NA	NA	NA	NA
WP_007548775.1\|323973_325779_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012673128.1\|325762_326368_+	guanylate kinase	E7DUI8	Liberibacter_phage	1.1e-15	32.4
WP_007548772.1\|326654_329444_+	ankyrin repeat domain-containing protein	G3EI93	Yokapox_virus	9.4e-06	22.0
WP_012673129.1\|329415_331215_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_012673130.1\|331960_333391_-\|tRNA	glutamate--tRNA ligase	A0A2K9L594	Tupanvirus	5.0e-11	28.3
WP_012673131.1\|333541_334255_+	hypothetical protein	NA	NA	NA	NA
WP_012673132.1\|334318_336394_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_012673133.1\|336342_337371_-	COX15/CtaA family protein	NA	NA	NA	NA
WP_012673134.1\|337352_338951_-	glycosyltransferase	NA	NA	NA	NA
WP_006280273.1\|338956_339433_-	hypothetical protein	NA	NA	NA	NA
WP_007548633.1\|339441_339921_-	ATP synthase F0 subunit B	NA	NA	NA	NA
WP_006014985.1\|339924_340152_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_006280272.1\|340211_340937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_010962582.1\|341166_341430_+	hypothetical protein	NA	NA	NA	NA
WP_012673135.1\|341542_343882_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_007548631.1\|343872_346251_-	hypothetical protein	NA	NA	NA	NA
WP_007548628.1\|346430_349742_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	4.3e-175	33.8
WP_007548626.1\|349918_351385_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.4e-40	29.8
WP_010962578.1\|351524_352844_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_010082641.1\|353455_353884_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_012673137.1\|353939_354920_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_006279888.1\|355328_356252_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_006280528.1\|356259_357522_-	MFS transporter	Q6JIH2	Burkholderia_virus	8.8e-36	27.3
WP_007548818.1\|357583_359386_-\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	7.2e-07	22.5
WP_007548816.1\|360016_360640_+	heme ABC exporter ATP-binding protein CcmA	NA	NA	NA	NA
WP_006280467.1\|361666_362962_+	sodium:proton antiporter	NA	NA	NA	NA
WP_084741724.1\|363611_363956_+\|transposase	transposase	NA	NA	NA	NA
WP_095866567.1\|363909_364251_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_153801316.1\|364335_364500_+	hypothetical protein	NA	NA	NA	NA
WP_080717620.1\|364489_364654_+\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

374739 : 424131

Wolbachia_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010962971.1\|374739_375183_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-28	76.8
WP_173862902.1\|375439_375583_+	hypothetical protein	NA	NA	NA	NA
WP_006280223.1\|375620_377168_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-132	50.0
WP_007551350.1\|377164_377974_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	8.1e-51	58.3
WP_094745766.1\|378151_378983_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_006280574.1\|379158_380046_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_012673143.1\|380036_380915_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_007549255.1\|381868_383041_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_084741728.1\|383079_386148_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_094745767.1\|387243_388075_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_173862878.1\|389012_391619_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_007548562.1\|391687_393070_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_049749680.1\|393115_394228_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007552982.1\|394564_395206_-	fructose-6-phosphate aldolase	M1PR54	Cyanophage	5.8e-44	45.8
WP_094189589.1\|395331_396390_-\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.8e-167	82.1
WP_007549769.1\|396576_397122_-	hypothetical protein	Q52PS5	Xanthomonas_phage	1.8e-25	39.4
WP_012673147.1\|397142_397976_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.7e-83	76.2
WP_006280223.1\|397972_399520_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-132	50.0
WP_173862902.1\|399557_399701_-	hypothetical protein	NA	NA	NA	NA
WP_007549020.1\|399957_400401_-\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.3e-31	81.7
WP_007549019.1\|400864_401338_+	hypothetical protein	A0A1B2LRS6	Wolbachia_phage	3.4e-41	60.6
WP_094189589.1\|401475_402534_+\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.8e-167	82.1
WP_006280244.1\|403044_403923_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.6e-39	40.4
WP_006280027.1\|403906_404482_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_007549014.1\|404474_404741_-	DUF2312 domain-containing protein	B0VK10	Azospirillum_phage	1.7e-10	40.7
WP_007549013.1\|404754_406038_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_006280246.1\|406126_407305_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_010962676.1\|407580_408753_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_095866567.1\|409428_409770_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_153801317.1\|409854_410016_+	hypothetical protein	NA	NA	NA	NA
WP_010082072.1\|410008_410173_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_012673148.1\|410331_412038_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_012673149.1\|412171_412867_-	hypothetical protein	NA	NA	NA	NA
WP_006280986.1\|412953_413547_-	hypothetical protein	NA	NA	NA	NA
WP_007549125.1\|414444_416424_-	hypothetical protein	NA	NA	NA	NA
WP_007549123.1\|416625_418335_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	5.3e-52	28.9
WP_007549122.1\|419476_419920_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	2.4e-28	75.6
WP_173862902.1\|420176_420320_+	hypothetical protein	NA	NA	NA	NA
WP_007548332.1\|421831_422854_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_007549348.1\|423390_424131_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.7e-55	58.0

DBSCAN-SWA_5

432768 : 492960

Shigella_phage(22.22%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094189578.1\|432768_433600_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_094189578.1\|434776_435608_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_007548332.1\|435864_436887_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_012673151.1\|437626_438790_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_012673152.1\|439015_442213_-	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0B5A7K5	Paracoccus_phage	2.3e-117	29.3
WP_084741734.1\|442688_442832_+	hypothetical protein	NA	NA	NA	NA
WP_006280485.1\|442971_443529_-	dCTP deaminase	S5VM63	Pseudomonas_phage	1.5e-56	62.7
WP_012673153.1\|443670_444687_+	substrate-binding domain-containing protein	A0A1B1IWY0	uncultured_Mediterranean_phage	1.7e-61	38.9
WP_006280721.1\|444766_445693_-	hypothetical protein	NA	NA	NA	NA
WP_007548804.1\|445960_447421_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_006280192.1\|447668_449039_-	magnesium transporter	NA	NA	NA	NA
WP_095866573.1\|449192_450296_+	peptide chain release factor 2	NA	NA	NA	NA
WP_010082072.1\|450476_450641_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|450633_450795_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_144078574.1\|450798_451233_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.1e-09	36.4
WP_007548709.1\|451217_451511_-\|transposase	transposase	NA	NA	NA	NA
WP_006280935.1\|451589_452348_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-20	33.3
WP_012673154.1\|452344_453130_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_012673155.1\|453536_454571_-	Fic family protein	NA	NA	NA	NA
WP_007548714.1\|454740_455733_-	hypothetical protein	NA	NA	NA	NA
WP_007548716.1\|455738_455918_-	hypothetical protein	NA	NA	NA	NA
WP_010962536.1\|456049_456850_-	metal ABC transporter permease	NA	NA	NA	NA
WP_012673156.1\|456851_457217_-	Mth938-like domain-containing protein	NA	NA	NA	NA
WP_006280386.1\|457220_458087_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_012673157.1\|458168_461468_+	UvrD-helicase domain-containing protein	G3MA40	Bacillus_virus	1.5e-10	30.9
WP_007549156.1\|461574_461865_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_006280440.1\|462134_462809_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	2.7e-47	43.2
WP_007549159.1\|463620_464217_-	RDD family protein	NA	NA	NA	NA
WP_012673158.1\|464430_465882_+	replicative DNA helicase	A0A218KST2	Xenohaliotis_phage	2.3e-72	37.6
WP_041582607.1\|466012_466432_+	hypothetical protein	NA	NA	NA	NA
WP_007548973.1\|466513_467386_+	hypothetical protein	NA	NA	NA	NA
WP_007548974.1\|467459_469106_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.2e-93	35.8
WP_006280332.1\|469696_470872_-	multifunctional ribose 5-phosphate isomerase B/3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	A0A1B1IVA4	uncultured_Mediterranean_phage	3.0e-06	27.8
WP_080717604.1\|471106_471163_+	hypothetical protein	NA	NA	NA	NA
WP_012673159.1\|471772_473521_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	9.3e-60	35.1
WP_006280480.1\|473758_474841_+	Fic family protein	A0A1V0E025	Clostridioides_phage	4.6e-09	26.5
WP_012673160.1\|475050_476133_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_084741697.1\|476234_476399_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-06	48.1
WP_010082071.1\|476391_476553_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_144078574.1\|476556_476991_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.1e-09	36.4
WP_081600753.1\|476975_477278_-\|transposase	transposase	NA	NA	NA	NA
WP_010962526.1\|477357_477672_-	septum formation initiator family protein	NA	NA	NA	NA
WP_006279631.1\|477721_477850_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_006280267.1\|477899_478730_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_012673161.1\|478865_479576_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_006280265.1\|479851_481129_+	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	5.9e-56	32.3
WP_012673162.1\|482212_484651_+	hypothetical protein	NA	NA	NA	NA
WP_007550159.1\|484763_485027_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_007550161.1\|485004_485601_+	septum formation protein Maf	NA	NA	NA	NA
WP_012673163.1\|485592_488265_-	hypothetical protein	NA	NA	NA	NA
WP_012673164.1\|488611_489955_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_012673165.1\|490275_491298_+\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_007552972.1\|492015_492285_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007549647.1\|492404_492731_+\|transposase	transposase	NA	NA	NA	NA
WP_081600779.1\|492669_492960_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

500326 : 536032

Bacillus_phage(12.5%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012673167.1\|500326_501349_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_006280322.1\|502439_503690_-	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_006280323.1\|503724_505020_-	sodium:proton antiporter	NA	NA	NA	NA
WP_041582609.1\|505306_507088_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-36	29.2
WP_012673169.1\|507100_509554_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	7.6e-201	47.6
WP_006279985.1\|509569_510847_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.6e-109	51.9
WP_006280254.1\|510846_511473_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.7e-60	60.9
WP_041582610.1\|511484_512819_-	trigger factor	NA	NA	NA	NA
WP_006279461.1\|513199_513796_+	BON domain-containing protein	NA	NA	NA	NA
WP_007549071.1\|513856_514786_+	glutathione synthase	NA	NA	NA	NA
WP_007549072.1\|514770_515802_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_006279962.1\|515871_516264_+	hypothetical protein	NA	NA	NA	NA
WP_007549070.1\|516269_517643_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	6.2e-43	27.9
WP_167884946.1\|518352_518463_-	hypothetical protein	NA	NA	NA	NA
WP_012673171.1\|519380_520979_+	hypothetical protein	NA	NA	NA	NA
WP_094189588.1\|520970_521195_-	hypothetical protein	NA	NA	NA	NA
WP_044471196.1\|521240_521525_+\|transposase	transposase	NA	NA	NA	NA
WP_012673172.1\|522454_525379_-	AsmA-like C-terminal domain-containing protein	NA	NA	NA	NA
WP_007548952.1\|525371_525809_-	ribonuclease HI	J9Q745	Salmonella_phage	4.6e-32	44.1
WP_007548955.1\|525985_526873_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_006280406.1\|526874_528425_-	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.2e-10	35.0
WP_012673173.1\|528440_529205_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_084741710.1\|530587_530752_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_153801315.1\|530744_530906_-	hypothetical protein	NA	NA	NA	NA
WP_084741708.1\|530990_531167_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_084741706.1\|531284_531629_-\|transposase	transposase	NA	NA	NA	NA
WP_007549478.1\|531771_533292_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_007549473.1\|533558_534293_+	3-oxoacyl-[acyl-carrier-protein] reductase	A0A0K0KVL6	Prochlorococcus_phage	1.8e-09	29.2
WP_007550269.1\|534388_534724_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_012673175.1\|534751_536032_-\|protease	M48 family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_7

560175 : 609359

Wolbachia_phage(77.42%)

capsid,tail,plate,head,portal,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007548562.1\|560175_561558_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_173862868.1\|561672_564399_-	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	1.1e-88	41.0
WP_007551227.1\|564609_565053_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	4.6e-32	85.4
WP_173862902.1\|565309_565453_+	hypothetical protein	NA	NA	NA	NA
WP_006280223.1\|565490_567038_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-132	50.0
WP_007550849.1\|567034_567808_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	7.9e-88	76.7
WP_010082266.1\|567808_568348_+	hypothetical protein	D9I601	Acinetobacter_virus	2.4e-22	36.5
WP_012673190.1\|569050_571480_-	hypothetical protein	NA	NA	NA	NA
WP_012673191.1\|571722_573147_+	cytoplasmic incompatibility factor CifA	NA	NA	NA	NA
WP_012673192.1\|577842_580743_+	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	7.3e-94	38.6
WP_012673193.1\|581149_582643_-	recombinase family protein	Q9JML1	Wolbachia_phage	1.6e-257	89.6
WP_094189578.1\|582830_583663_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_007549613.1\|584008_584467_-	ankyrin repeat domain-containing protein	Q9JML3	Wolbachia_phage	1.3e-37	80.4
WP_006280237.1\|584492_585227_-	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	1.8e-81	83.7
WP_006280238.1\|585394_586555_-	hypothetical protein	A0A1B2LRQ8	Wolbachia_phage	2.4e-189	80.8
WP_012673194.1\|586554_587346_-\|plate	baseplate J/gp47 family protein	Q9JML6	Wolbachia_phage	1.5e-113	78.2
WP_007552425.1\|587348_587684_-	GPW/gp25 family protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	8.3e-42	80.2
WP_010082105.1\|587686_587941_-	PAAR domain-containing protein	Q75QM1	Wolbachia_phage	1.4e-12	69.6
WP_012673195.1\|587948_588413_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	9.0e-71	87.7
WP_010962732.1\|588399_588876_-	hypothetical protein	Q75QM3	Wolbachia_phage	3.2e-63	79.1
WP_006280676.1\|588872_589394_-\|tail	phage tail protein	A0A1B2LRS9	Wolbachia_phage	1.7e-57	67.1
WP_007550857.1\|589395_589701_-	hypothetical protein	Q9JMM1	Wolbachia_phage	3.4e-42	78.2
WP_006280204.1\|589798_590803_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	3.3e-187	94.9
WP_010082142.1\|590840_591212_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.0e-53	89.4
WP_006280203.1\|591286_592348_-	S49 family peptidase	Q75QM8	Wolbachia_phage	1.6e-163	87.1
WP_012673196.1\|592344_593763_-\|portal	phage portal protein	Q9JMM5	Wolbachia_phage	1.2e-262	95.3
WP_010962706.1\|593865_594147_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1C9M026	Mycobacterium_phage	3.0e-05	51.4
WP_012673197.1\|594137_594398_-	hypothetical protein	NA	NA	NA	NA
WP_010962704.1\|594438_594672_-	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	2.0e-26	80.8
WP_012673198.1\|594675_596499_-\|terminase	phage terminase large subunit family protein	Q9JMM7	Wolbachia_phage	0.0e+00	96.2
WP_010082188.1\|596495_597977_-	ankyrin repeat domain-containing protein	F8QZT7	Wolbachia_phage	2.7e-217	84.5
WP_006280180.1\|597980_598460_-	hypothetical protein	Q9JMM9	Wolbachia_phage	8.7e-77	96.2
WP_006280179.1\|598473_599700_-	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.3e-221	92.6
WP_012673199.1\|599813_600269_-	hypothetical protein	Q9JMN0	Wolbachia_phage	3.2e-81	97.4
WP_006280269.1\|601105_602110_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	6.7e-180	94.3
WP_006280268.1\|602695_604009_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.9e-34	30.2
WP_006280189.1\|605174_607370_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	0.0e+00	99.8
WP_007548562.1\|607976_609359_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

625748 : 696244

Wolbachia_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006280072.1\|625748_627056_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.3e-70	34.5
WP_006280073.1\|627120_628035_-	DMT family transporter	NA	NA	NA	NA
WP_010962716.1\|628518_629430_-	helix-turn-helix domain-containing protein	A0A1B2LRR7	Wolbachia_phage	4.2e-88	58.7
WP_006280075.1\|629455_630364_-	helix-turn-helix transcriptional regulator	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	1.2e-82	57.6
WP_007549714.1\|630439_631573_-	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	2.4e-125	71.4
WP_006280787.1\|631673_632330_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	2.0e-68	60.5
WP_010962718.1\|632499_633411_-	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	4.5e-82	61.3
WP_007551699.1\|633540_633984_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	3.2e-33	86.6
WP_173862902.1\|634240_634384_+	hypothetical protein	NA	NA	NA	NA
WP_007548332.1\|635895_636918_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_007550709.1\|637455_638184_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.3e-84	78.3
WP_007548562.1\|638323_639706_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_041582644.1\|641262_642702_+	hypothetical protein	NA	NA	NA	NA
WP_012673204.1\|642929_643952_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_012673205.1\|644215_645154_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.2e-69	47.4
WP_012673206.1\|645140_645740_-	peroxiredoxin	NA	NA	NA	NA
WP_007550039.1\|646688_647561_-	hypothetical protein	NA	NA	NA	NA
WP_007550037.1\|647676_648015_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	7.6e-11	40.5
WP_012673207.1\|648083_649016_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
WP_006279329.1\|649012_649489_+	signal peptidase II	NA	NA	NA	NA
WP_007548859.1\|649518_650859_+	insulinase family protein	NA	NA	NA	NA
WP_007548860.1\|650845_652165_+	insulinase family protein	NA	NA	NA	NA
WP_012673208.1\|652158_652725_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.6e-32	41.8
WP_006279382.1\|653029_653446_+	hypothetical protein	NA	NA	NA	NA
WP_006280659.1\|653438_653969_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA
WP_012673209.1\|654037_655885_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007548863.1\|656005_656455_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.0e-26	47.1
WP_006280508.1\|656461_657253_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_006280392.1\|657943_659689_+	type I secretion system permease/ATPase	A0A1V0SE00	Indivirus	1.5e-17	30.1
WP_049749683.1\|661589_662978_+	hypothetical protein	NA	NA	NA	NA
WP_006280080.1\|662982_663591_+	hypothetical protein	NA	NA	NA	NA
WP_006280081.1\|663595_664402_+	hypothetical protein	NA	NA	NA	NA
WP_012673210.1\|664556_665039_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	6.8e-37	49.4
WP_041582614.1\|665048_666005_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_012673212.1\|666043_668032_-	NAD-dependent DNA ligase LigA	A0A1W6DX16	Sphingobium_phage	1.2e-100	37.4
WP_012673213.1\|668246_669569_+\|tRNA	glutamate--tRNA ligase	A0A2K9L0I5	Tupanvirus	1.3e-13	34.0
WP_041582646.1\|670260_673590_+	DNA polymerase III subunit alpha	A0A0K1Y906	Streptomyces_phage	8.8e-168	35.0
WP_012673215.1\|673638_674412_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_007548890.1\|674411_674687_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_007548891.1\|674694_675249_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_012673216.1\|675485_676778_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	3.8e-18	27.1
WP_012673217.1\|677020_678277_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_007548894.1\|678319_679468_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_007548562.1\|679464_680847_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_006280275.1\|681123_681762_-	endonuclease III	NA	NA	NA	NA
WP_006280276.1\|681783_683085_-	hypothetical protein	NA	NA	NA	NA
WP_012673218.1\|683168_684605_-	isocitrate dehydrogenase	NA	NA	NA	NA
WP_006280486.1\|684748_685228_+	RDD family protein	NA	NA	NA	NA
WP_006280487.1\|685250_685727_+	RDD family protein	NA	NA	NA	NA
WP_007549497.1\|685892_687296_-	transcription termination factor Rho	NA	NA	NA	NA
WP_012673219.1\|687495_688098_-	DUF1013 domain-containing protein	NA	NA	NA	NA
WP_006280424.1\|688405_690205_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_007548332.1\|690540_691563_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_041582647.1\|692040_692469_+	hypothetical protein	NA	NA	NA	NA
WP_007552904.1\|692978_693242_+	hypothetical protein	NA	NA	NA	NA
WP_006280346.1\|693231_693747_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_094189589.1\|694012_695071_+\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.8e-167	82.1
WP_006280520.1\|695236_696244_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.7e-64	40.5

DBSCAN-SWA_9

709995 : 841712

112

Wolbachia_phage(79.69%)

capsid,tail,tRNA,plate,head,portal,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012673222.1\|709995_711447_-\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	1.7e-59	31.7
WP_006280388.1\|712436_714011_-	penicillin-binding protein	NA	NA	NA	NA
WP_006280389.1\|713965_714805_-	polysaccharide deacetylase family protein	A0A2I2L4G0	Orpheovirus	1.3e-06	27.3
WP_012673223.1\|715134_715794_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	2.7e-44	42.5
WP_041582615.1\|715897_716230_+	helix-turn-helix transcriptional regulator	A0A1B2LRS2	Wolbachia_phage	6.8e-12	41.4
WP_041582616.1\|716264_716636_+	helix-turn-helix transcriptional regulator	A0A1B2LRS2	Wolbachia_phage	4.2e-10	30.9
WP_012673224.1\|716772_717855_-	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	1.1e-50	40.3
WP_012673225.1\|718053_718977_+	hypothetical protein	NA	NA	NA	NA
WP_007549995.1\|719028_719358_+	helix-turn-helix transcriptional regulator	E9P644	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.1e-06	31.7
WP_007549999.1\|719380_719755_+	helix-turn-helix transcriptional regulator	A0A1B2LRS2	Wolbachia_phage	2.7e-09	31.4
WP_162829039.1\|720043_720184_+	hypothetical protein	NA	NA	NA	NA
WP_084741744.1\|720187_720313_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007552506.1\|720456_720633_+	hypothetical protein	NA	NA	NA	NA
WP_012673226.1\|721255_724036_-	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	1.7e-127	47.3
WP_012673227.1\|725962_728227_-	hypothetical protein	Q9JMK9	Wolbachia_phage	1.9e-12	33.3
WP_012673228.1\|728236_729607_-	hypothetical protein	NA	NA	NA	NA
WP_007549972.1\|729888_730215_+	hypothetical protein	NA	NA	NA	NA
WP_007549519.1\|730606_731224_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007549517.1\|731248_731581_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_007549515.1\|731612_732884_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_007548562.1\|733006_734389_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_007549098.1\|734644_734818_+	hypothetical protein	NA	NA	NA	NA
WP_007549099.1\|734842_735136_+	hypothetical protein	NA	NA	NA	NA
WP_007549100.1\|735446_736526_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	9.4e-204	97.5
WP_007549102.1\|736738_737194_-	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	3.0e-79	97.4
WP_007549103.1\|737636_738647_-	ankyrin repeat domain-containing protein	A0A1B2LRP7	Wolbachia_phage	4.5e-115	97.7
WP_094189578.1\|738682_739515_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_007549104.1\|739542_741396_-	ankyrin repeat domain-containing protein	A0A1B2LRP7	Wolbachia_phage	9.8e-92	97.2
WP_012673229.1\|741776_749201_-	ankyrin repeat domain-containing protein	A0A1B2LRP8	Wolbachia_phage	0.0e+00	91.9
WP_012673230.1\|749573_750653_-	ankyrin repeat domain-containing protein	A0A1B2LRR0	Wolbachia_phage	1.1e-156	97.8
WP_012673231.1\|750748_753349_-	ankyrin repeat domain-containing protein	A0A1B2LRP2	Wolbachia_phage	2.5e-109	95.8
WP_007549910.1\|754222_755143_-	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	6.3e-132	76.7
WP_012673232.1\|755152_755371_-	hypothetical protein	A0A1B2LRU2	Wolbachia_phage	9.2e-10	55.2
WP_007549904.1\|755495_756032_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012673233.1\|755997_756978_-\|tail	tail protein	A0A1B2LRT8	Wolbachia_phage	4.2e-94	55.7
WP_012673234.1\|756979_757186_-\|tail	tail protein X	A0A1B2LRT9	Wolbachia_phage	1.9e-17	60.9
WP_007550111.1\|757163_757580_-\|tail	phage tail protein	A0A1B2LRV9	Wolbachia_phage	2.2e-23	45.7
WP_012673235.1\|757583_759764_-\|tail	phage tail tape measure protein	Q75QK7	Wolbachia_phage	1.0e-185	79.9
WP_007549241.1\|759876_760128_-\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	2.0e-32	90.4
WP_007549243.1\|760144_760645_-\|tail	phage major tail tube protein	Q75QK9	Wolbachia_phage	5.3e-85	94.0
WP_012673236.1\|760666_761818_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1B2LRR3	Wolbachia_phage	1.0e-200	89.6
WP_012673237.1\|761810_762371_-	hypothetical protein	Q75QL3	Wolbachia_phage	4.0e-41	60.4
WP_012673238.1\|762385_763852_-	hypothetical protein	Q75QL4	Wolbachia_phage	2.1e-166	79.3
WP_012673239.1\|763848_764043_-	hypothetical protein	A0A1B2LRW5	Wolbachia_phage	3.2e-22	78.1
WP_006280394.1\|764048_765236_-	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	6.7e-203	89.4
WP_094189578.1\|766389_767222_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_007549309.1\|768101_768788_-	hypothetical protein	Q75QL7	Wolbachia_phage	1.3e-118	93.4
WP_012673240.1\|768808_770026_-	hypothetical protein	A0A1B2LRQ8	Wolbachia_phage	1.1e-144	62.6
WP_012673241.1\|770032_770830_-\|plate	baseplate J/gp47 family protein	Q75QL9	Wolbachia_phage	2.6e-142	98.9
WP_012673242.1\|770839_771175_-	GPW/gp25 family protein	Q75QM0	Wolbachia_phage	2.3e-52	94.6
WP_007548996.1\|771180_771435_-	PAAR domain-containing protein	Q75QM1	Wolbachia_phage	3.3e-19	89.6
WP_007548997.1\|771443_771899_-\|plate	phage baseplate assembly protein V	Q75QM2	Wolbachia_phage	6.5e-74	92.7
WP_006280893.1\|771885_772359_-	hypothetical protein	Q75QM3	Wolbachia_phage	2.3e-85	99.4
WP_006280854.1\|772339_772837_-\|tail	phage tail protein	Q75QM4	Wolbachia_phage	3.7e-78	95.8
WP_012673243.1\|772829_773150_-	hypothetical protein	Q9JMM1	Wolbachia_phage	8.2e-39	78.4
WP_007548999.1\|773233_774238_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	7.2e-190	96.7
WP_007549003.1\|774263_774635_-\|head	head decoration protein	Q9JMM3	Wolbachia_phage	2.3e-53	88.6
WP_012673244.1\|774702_775740_-	S49 family peptidase	Q75QM8	Wolbachia_phage	3.0e-167	90.0
WP_007549005.1\|775736_777158_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	3.3e-265	95.4
WP_039963965.1\|777157_778189_-	DUF1016 family protein	Q9JMP5	Wolbachia_phage	7.5e-150	74.6
WP_007549008.1\|778215_778440_-	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	9.1e-29	89.2
WP_041582652.1\|778441_780274_-\|terminase	phage terminase large subunit family protein	Q9JMM7	Wolbachia_phage	0.0e+00	96.4
WP_012673247.1\|782942_784439_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012673248.1\|784435_785356_-	tyrosine recombinase XerC	S5W9T9	Leptospira_phage	2.1e-15	28.6
WP_012673249.1\|785358_786729_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	5.6e-36	27.5
WP_012673250.1\|786721_787831_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_044471264.1\|788200_788482_+\|transposase	transposase	NA	NA	NA	NA
WP_041582654.1\|788863_789115_+	hypothetical protein	NA	NA	NA	NA
WP_012673251.1\|789339_790146_-	DUF2163 domain-containing protein	Q5DN21	Alphaproteobacteria_virus	1.2e-09	37.8
WP_012673252.1\|790582_792562_-	porin	NA	NA	NA	NA
WP_012673253.1\|792769_793591_-	3'-5' exonuclease	NA	NA	NA	NA
WP_012673254.1\|793583_794468_-	GTPase Era	NA	NA	NA	NA
WP_010962802.1\|794718_795741_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_006280502.1\|795733_797140_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_012673255.1\|798041_798659_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.1e-35	39.6
WP_006280495.1\|798660_799935_+	insulinase family protein	G3MBJ8	Bacillus_virus	5.7e-51	33.5
WP_012673256.1\|800234_801830_-	hypothetical protein	NA	NA	NA	NA
WP_012673257.1\|802554_803772_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.6e-79	41.1
WP_007551984.1\|803772_804273_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_012673258.1\|804497_806600_+	hypothetical protein	NA	NA	NA	NA
WP_006280099.1\|807158_807929_-	response regulator transcription factor	A0A0K0PVG9	Roseobacter_phage	1.2e-11	46.1
WP_006280098.1\|808254_809238_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_006279290.1\|809257_809740_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_006280097.1\|809729_810509_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_006280096.1\|810551_811688_+	hypothetical protein	NA	NA	NA	NA
WP_012673259.1\|811691_812480_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_010082473.1\|812566_813019_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_173862870.1\|813012_813348_-	hypothetical protein	NA	NA	NA	NA
WP_007549395.1\|813403_813802_-	EVE domain-containing protein	NA	NA	NA	NA
WP_010962790.1\|813801_814998_-	cell division protein FtsZ	NA	NA	NA	NA
WP_007552865.1\|815246_815696_-	hypothetical protein	NA	NA	NA	NA
WP_041582617.1\|815779_817252_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_012673261.1\|817172_818804_-	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	2.9e-140	50.7
WP_007549549.1\|819116_820313_+	hypothetical protein	Q9JMN1	Wolbachia_phage	3.1e-147	62.3
WP_012673262.1\|820278_821388_+	hypothetical protein	Q9JMN2	Wolbachia_phage	8.3e-131	61.5
WP_012673263.1\|821403_823419_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	3.4e-255	76.1
WP_012673264.1\|823442_824669_-	AAA family ATPase	A0A1B2LRQ9	Wolbachia_phage	7.5e-141	63.0
WP_007549622.1\|824665_825166_-	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	5.7e-71	83.2
WP_007549624.1\|825189_825987_-	ATP-binding protein	E9P631	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.5e-129	84.4
WP_012673265.1\|826038_826530_-	sigma-70 family RNA polymerase sigma factor	A0A1B2LRS7	Wolbachia_phage	2.5e-31	48.7
WP_007549851.1\|827413_827884_+	hypothetical protein	E9P621	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.8e-64	76.1
WP_007549853.1\|828028_828499_+	hypothetical protein	A0A1B2LRT3	Wolbachia_phage	3.1e-63	85.9
WP_007548332.1\|829097_830120_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_006279266.1\|830653_830974_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_006280205.1\|830984_831962_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_012673267.1\|832023_832593_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_006280207.1\|832610_833609_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_012673268.1\|833784_834546_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_010082469.1\|834547_835075_-	cytochrome c family protein	NA	NA	NA	NA
WP_007548562.1\|837844_839227_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_007549148.1\|839805_840342_+	hypothetical protein	NA	NA	NA	NA
WP_007549149.1\|840443_841712_+\|tRNA	proline--tRNA ligase	A0A1V0SEQ8	Hokovirus	5.2e-12	21.7

DBSCAN-SWA_10

847748 : 917707

Prochlorococcus_phage(40.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006280293.1\|847748_848633_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_012673271.1\|848629_849577_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	4.2e-67	43.2
WP_012673272.1\|849881_851903_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_007549783.1\|852935_853223_+	hypothetical protein	NA	NA	NA	NA
WP_006280734.1\|853238_853814_-	hypothetical protein	NA	NA	NA	NA
WP_147737887.1\|854654_855944_-	hypothetical protein	NA	NA	NA	NA
WP_094189578.1\|856051_856883_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_012673274.1\|857908_858943_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_012673275.1\|858945_859818_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_012673276.1\|859821_861306_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-18	27.2
WP_012673277.1\|862647_863952_+	hypothetical protein	NA	NA	NA	NA
WP_007549698.1\|864045_864276_+	hypothetical protein	NA	NA	NA	NA
WP_012673278.1\|864296_866309_+	hypothetical protein	NA	NA	NA	NA
WP_012673279.1\|868159_870073_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_022626361.1\|870469_870766_-\|transposase	transposase	NA	NA	NA	NA
WP_049749685.1\|871700_871949_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012673280.1\|872293_872680_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_012673281.1\|872663_873704_-	hypothetical protein	NA	NA	NA	NA
WP_012673282.1\|873711_874059_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_007549232.1\|874931_876485_+	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA
WP_007549231.1\|876491_877082_+	COQ9 family protein	NA	NA	NA	NA
WP_049749687.1\|878713_879046_+	hypothetical protein	NA	NA	NA	NA
WP_006280837.1\|879003_879552_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_007549230.1\|879674_880307_-	hypothetical protein	NA	NA	NA	NA
WP_012673283.1\|880296_884034_-	type IV secretion system protein	NA	NA	NA	NA
WP_012673284.1\|884123_887069_-	type IV secretion system protein	NA	NA	NA	NA
WP_012673285.1\|887065_889453_-	type IV secretion system protein	NA	NA	NA	NA
WP_012673286.1\|889462_892027_-	type IV secretion system protein	NA	NA	NA	NA
WP_010962886.1\|892019_894425_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_007548615.1\|894434_894731_-	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_007548613.1\|894839_896375_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_077188400.1\|897059_897143_-	hypothetical protein	NA	NA	NA	NA
WP_007548612.1\|897436_900079_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	5.3e-75	36.7
WP_006280113.1\|900244_900688_+	PAS domain-containing protein	NA	NA	NA	NA
WP_007548610.1\|900786_900993_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_006279340.1\|901013_901379_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_012673287.1\|901391_902291_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	8.3e-12	38.9
WP_007548605.1\|902371_903883_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	6.4e-65	44.9
WP_007548604.1\|904626_906147_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_007548603.1\|906186_907167_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_007548602.1\|907295_907499_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_006280584.1\|907537_908332_+	NAD kinase	NA	NA	NA	NA
WP_007548601.1\|908415_909783_+	hypothetical protein	NA	NA	NA	NA
WP_012673288.1\|911616_913890_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_006279944.1\|913904_914177_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_012673289.1\|914189_914450_-	hypothetical protein	NA	NA	NA	NA
WP_007548764.1\|914535_914943_-\|transposase	transposase	NA	NA	NA	NA
WP_167347183.1\|914962_915145_-\|transposase	transposase	NA	NA	NA	NA
WP_121692633.1\|915637_915712_+	hypothetical protein	NA	NA	NA	NA
WP_094189578.1\|916874_917707_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

930313 : 982352

Bacillus_virus(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094189578.1\|930313_931146_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_012673293.1\|931213_931969_-	putative folate metabolism gamma-glutamate ligase	NA	NA	NA	NA
WP_007548842.1\|931970_932459_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	2.4e-13	33.1
WP_006280499.1\|932452_933736_-	dihydropteroate synthase	S4VNV0	Pandoravirus	5.8e-27	28.0
WP_007548841.1\|933732_934119_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_007548840.1\|934158_934815_-	CADD family putative folate metabolism protein	NA	NA	NA	NA
WP_007548839.1\|935004_935328_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.4e-16	44.4
WP_012673294.1\|935444_936065_-	3'-5' exonuclease	NA	NA	NA	NA
WP_007548562.1\|936989_938372_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_012673295.1\|939804_942636_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_012673296.1\|942744_945708_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.5e-62	27.7
WP_006279733.1\|945803_946316_+	hypothetical protein	NA	NA	NA	NA
WP_012673297.1\|946950_949746_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	58.0
WP_007549694.1\|949800_950445_+	hypothetical protein	NA	NA	NA	NA
WP_006280671.1\|950560_951292_+	ComF family protein	NA	NA	NA	NA
WP_012673298.1\|951480_952908_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_012673299.1\|952882_954124_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_007549117.1\|954131_954416_-	BolA family transcriptional regulator	NA	NA	NA	NA
WP_012673300.1\|954486_956409_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.1e-150	50.5
WP_012673301.1\|956495_958268_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_010082632.1\|958643_958919_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_012673303.1\|958976_959858_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012673304.1\|959849_960590_+	metal ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	4.7e-13	30.1
WP_012673305.1\|960586_962017_+	2-polyprenylphenol 6-hydroxylase	A0A0R6PHP6	Moraxella_phage	1.0e-19	23.7
WP_094189589.1\|962653_963712_+\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.8e-167	82.1
WP_012673306.1\|963886_964873_-	quinone oxidoreductase	NA	NA	NA	NA
WP_007549209.1\|964991_965714_+	hypothetical protein	NA	NA	NA	NA
WP_006280411.1\|965959_966496_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_006280412.1\|966496_967219_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_012673307.1\|967298_968063_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_012673308.1\|968155_968650_+	Smr/MutS family protein	NA	NA	NA	NA
WP_012673309.1\|969533_970568_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012673310.1\|970708_971161_+	hypothetical protein	NA	NA	NA	NA
WP_007552972.1\|971482_971752_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007549647.1\|971871_972198_+\|transposase	transposase	NA	NA	NA	NA
WP_081600779.1\|972136_972427_+\|transposase	transposase	NA	NA	NA	NA
WP_012673311.1\|972640_973915_-	amino acid permease	NA	NA	NA	NA
WP_006280466.1\|974050_975517_+	hypothetical protein	NA	NA	NA	NA
WP_051955852.1\|975595_975820_-	hypothetical protein	NA	NA	NA	NA
WP_041582659.1\|975943_977110_+	aspartate kinase	NA	NA	NA	NA
WP_007549940.1\|977201_977405_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_081420825.1\|977509_977821_+\|transposase	transposase	NA	NA	NA	NA
WP_094745768.1\|978361_979373_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_094189578.1\|979483_980316_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_094189578.1\|981520_982352_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

998609 : 1052472

Bacillus_virus(14.29%)

tRNA,portal,protease,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012673323.1\|998609_1000511_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	3.2e-130	37.8
WP_007550132.1\|1000507_1000699_-	hypothetical protein	NA	NA	NA	NA
WP_038199316.1\|1000814_1001297_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_012673325.1\|1001428_1002757_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_012673326.1\|1003060_1004077_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	3.5e-19	28.6
WP_010962965.1\|1004823_1005780_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_007548959.1\|1005772_1006810_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_010962967.1\|1006820_1007003_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_006280452.1\|1007341_1008124_+	ABC transporter permease	NA	NA	NA	NA
WP_007548961.1\|1008116_1008818_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	3.0e-25	35.7
WP_007548963.1\|1008925_1011301_+	hypothetical protein	NA	NA	NA	NA
WP_007548965.1\|1011527_1012025_+	hypothetical protein	NA	NA	NA	NA
WP_007548967.1\|1012090_1013254_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_012673327.1\|1013533_1013977_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-28	76.8
WP_019236827.1\|1014231_1014375_+	hypothetical protein	NA	NA	NA	NA
WP_007548398.1\|1014412_1015960_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.6e-133	50.4
WP_006280130.1\|1015956_1016745_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.2e-51	59.1
WP_006280131.1\|1016779_1018027_-	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	1.9e-35	38.3
WP_012673328.1\|1018313_1019732_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_012673329.1\|1019949_1020447_+	hypothetical protein	NA	NA	NA	NA
WP_006280372.1\|1020691_1021399_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_006280373.1\|1021398_1022178_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_012673330.1\|1022204_1023242_-	hypothetical protein	NA	NA	NA	NA
WP_012673331.1\|1023291_1025868_-	DNA polymerase I	A0A1B1IST8	uncultured_Mediterranean_phage	6.6e-46	31.5
WP_084741697.1\|1026111_1026276_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-06	48.1
WP_010082071.1\|1026268_1026430_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_049749689.1\|1026433_1026655_-	hypothetical protein	NA	NA	NA	NA
WP_084741701.1\|1026844_1027138_-\|transposase	transposase	NA	NA	NA	NA
WP_006280462.1\|1027370_1028177_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_006280463.1\|1028182_1028827_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_012673332.1\|1029236_1029602_-	hypothetical protein	NA	NA	NA	NA
WP_007549330.1\|1029723_1031391_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	3.5e-88	35.8
WP_007548926.1\|1031399_1033334_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_006280233.1\|1033748_1035245_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_084741758.1\|1035237_1035651_+	hypothetical protein	NA	NA	NA	NA
WP_007548930.1\|1035647_1038191_+	hypothetical protein	NA	NA	NA	NA
WP_007548562.1\|1038464_1039847_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_094745770.1\|1039956_1040753_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041582621.1\|1040831_1041461_+	hypothetical protein	NA	NA	NA	NA
WP_094189578.1\|1041488_1042320_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_041582622.1\|1042317_1042509_+	hypothetical protein	NA	NA	NA	NA
WP_007549262.1\|1042743_1043937_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.1e-83	43.6
WP_080717643.1\|1044172_1044436_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012673333.1\|1044411_1044645_-	hypothetical protein	NA	NA	NA	NA
WP_007549260.1\|1044898_1045516_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_007549259.1\|1045515_1046499_+	LD-carboxypeptidase	NA	NA	NA	NA
WP_012673334.1\|1046823_1048287_-\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	8.9e-56	32.0
WP_006280324.1\|1049066_1049864_-	phosphoribosylformylglycinamidine synthase subunit PurQ	A9YX36	Burkholderia_phage	1.3e-21	31.6
WP_007549491.1\|1049870_1051121_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_006279489.1\|1051400_1051778_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_007549279.1\|1051761_1052472_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_13

1059135 : 1115818

Wolbachia_phage(77.42%)

capsid,tail,plate,head,portal,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007548332.1\|1059135_1060158_+\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_012673337.1\|1060454_1061705_-	citrate synthase	NA	NA	NA	NA
WP_012673338.1\|1061785_1062055_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_006280259.1\|1062106_1062832_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_006280258.1\|1062887_1063874_-	tyrosine recombinase	S5W9T9	Leptospira_phage	1.7e-13	27.4
WP_007549057.1\|1063863_1064034_-	hypothetical protein	NA	NA	NA	NA
WP_006280257.1\|1064239_1064875_-	chromosomal DNA replication initiator DnaA	NA	NA	NA	NA
WP_007549059.1\|1065004_1066069_-	AI-2E family transporter	NA	NA	NA	NA
WP_007549060.1\|1066106_1067015_-	hypothetical protein	NA	NA	NA	NA
WP_007549062.1\|1067101_1068313_+	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_007549063.1\|1069271_1070336_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_007549064.1\|1070432_1070834_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_007549065.1\|1071068_1071512_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	1.4e-28	75.6
WP_173862902.1\|1071768_1071912_+	hypothetical protein	NA	NA	NA	NA
WP_006280223.1\|1071949_1073497_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-132	50.0
WP_007550849.1\|1073493_1074267_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	7.9e-88	76.7
WP_010082266.1\|1074267_1074807_+	hypothetical protein	D9I601	Acinetobacter_virus	2.4e-22	36.5
WP_012673190.1\|1075509_1077939_-	hypothetical protein	NA	NA	NA	NA
WP_012673191.1\|1078181_1079606_+	cytoplasmic incompatibility factor CifA	NA	NA	NA	NA
WP_012673192.1\|1084301_1087202_+	ankyrin repeat domain-containing protein	Q9JML0	Wolbachia_phage	7.3e-94	38.6
WP_012673193.1\|1087608_1089102_-	recombinase family protein	Q9JML1	Wolbachia_phage	1.6e-257	89.6
WP_094189578.1\|1089289_1090122_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_007549613.1\|1090467_1090926_-	ankyrin repeat domain-containing protein	Q9JML3	Wolbachia_phage	1.3e-37	80.4
WP_006280237.1\|1090951_1091686_-	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	1.8e-81	83.7
WP_006280238.1\|1091853_1093014_-	hypothetical protein	A0A1B2LRQ8	Wolbachia_phage	2.4e-189	80.8
WP_012673194.1\|1093013_1093805_-\|plate	baseplate J/gp47 family protein	Q9JML6	Wolbachia_phage	1.5e-113	78.2
WP_007552425.1\|1093807_1094143_-	GPW/gp25 family protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	8.3e-42	80.2
WP_010082105.1\|1094145_1094400_-	PAAR domain-containing protein	Q75QM1	Wolbachia_phage	1.4e-12	69.6
WP_012673195.1\|1094407_1094872_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	9.0e-71	87.7
WP_010962732.1\|1094858_1095335_-	hypothetical protein	Q75QM3	Wolbachia_phage	3.2e-63	79.1
WP_006280676.1\|1095331_1095853_-\|tail	phage tail protein	A0A1B2LRS9	Wolbachia_phage	1.7e-57	67.1
WP_007550857.1\|1095854_1096160_-	hypothetical protein	Q9JMM1	Wolbachia_phage	3.4e-42	78.2
WP_006280204.1\|1096257_1097262_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	3.3e-187	94.9
WP_010082142.1\|1097299_1097671_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.0e-53	89.4
WP_006280203.1\|1097745_1098807_-	S49 family peptidase	Q75QM8	Wolbachia_phage	1.6e-163	87.1
WP_012673196.1\|1098803_1100222_-\|portal	phage portal protein	Q9JMM5	Wolbachia_phage	1.2e-262	95.3
WP_010962706.1\|1100324_1100606_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1C9M026	Mycobacterium_phage	3.0e-05	51.4
WP_012673197.1\|1100596_1100857_-	hypothetical protein	NA	NA	NA	NA
WP_010962704.1\|1100897_1101131_-	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	2.0e-26	80.8
WP_012673198.1\|1101134_1102958_-\|terminase	phage terminase large subunit family protein	Q9JMM7	Wolbachia_phage	0.0e+00	96.2
WP_010082188.1\|1102954_1104436_-	ankyrin repeat domain-containing protein	F8QZT7	Wolbachia_phage	2.7e-217	84.5
WP_006280180.1\|1104439_1104919_-	hypothetical protein	Q9JMM9	Wolbachia_phage	8.7e-77	96.2
WP_006280179.1\|1104932_1106159_-	DNA modification methylase	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.3e-221	92.6
WP_012673199.1\|1106272_1106728_-	hypothetical protein	Q9JMN0	Wolbachia_phage	3.2e-81	97.4
WP_006280269.1\|1107564_1108569_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	6.7e-180	94.3
WP_006280268.1\|1109154_1110468_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.9e-34	30.2
WP_006280189.1\|1111633_1113829_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	0.0e+00	99.8
WP_007548562.1\|1114435_1115818_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

1132207 : 1195086

Wolbachia_phage(27.78%)

tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006280072.1\|1132207_1133515_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.3e-70	34.5
WP_006280073.1\|1133579_1134494_-	DMT family transporter	NA	NA	NA	NA
WP_010962716.1\|1134977_1135889_-	helix-turn-helix domain-containing protein	A0A1B2LRR7	Wolbachia_phage	4.2e-88	58.7
WP_006280075.1\|1135914_1136823_-	helix-turn-helix transcriptional regulator	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	1.2e-82	57.6
WP_007549714.1\|1136898_1138032_-	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	2.4e-125	71.4
WP_006280787.1\|1138132_1138789_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	2.0e-68	60.5
WP_010962718.1\|1138958_1139870_-	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	4.5e-82	61.3
WP_007551699.1\|1139999_1140443_+\|transposase	PD-(D/E)XK nuclease family transposase	A0A1B2LRR6	Wolbachia_phage	3.2e-33	86.6
WP_173862902.1\|1140699_1140843_+	hypothetical protein	NA	NA	NA	NA
WP_006280223.1\|1140880_1142428_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-132	50.0
WP_012673340.1\|1142424_1143183_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.9e-57	55.6
WP_012673341.1\|1143193_1144792_-	iron ABC transporter permease	NA	NA	NA	NA
WP_006280186.1\|1144921_1145749_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_006280185.1\|1145927_1148378_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	6.2e-102	32.4
WP_007548332.1\|1149784_1150807_+\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_049749691.1\|1151070_1152909_+	MFS transporter	NA	NA	NA	NA
WP_012673343.1\|1152949_1154227_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.1e-94	50.3
WP_041582623.1\|1155125_1155488_-	collagen-like protein	NA	NA	NA	NA
WP_007548332.1\|1155692_1156715_+\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_041582624.1\|1157379_1157643_+	hypothetical protein	NA	NA	NA	NA
WP_006280362.1\|1157704_1158934_-	MFS transporter	NA	NA	NA	NA
WP_006280361.1\|1159009_1160224_-	MFS transporter	NA	NA	NA	NA
WP_007548332.1\|1160644_1161667_+\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_144078586.1\|1161894_1162935_-	hypothetical protein	NA	NA	NA	NA
WP_012673344.1\|1163623_1167010_-	peptidase M2	NA	NA	NA	NA
WP_094189578.1\|1167077_1167910_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_006280506.1\|1168278_1169175_+	cation diffusion facilitator family transporter	A0A1V0SED0	Indivirus	1.0e-09	28.2
WP_007548743.1\|1169227_1171048_+	hypothetical protein	NA	NA	NA	NA
WP_007548744.1\|1171042_1171615_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_007548745.1\|1171762_1173229_-	amino acid carrier protein	NA	NA	NA	NA
WP_007548746.1\|1173230_1174574_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_007548748.1\|1174597_1175368_-\|holin	phosphatidylcholine/phosphatidylserine synthase	NA	NA	NA	NA
WP_007548750.1\|1175364_1176057_-	phosphatidylserine decarboxylase	A0A1V0SDU9	Indivirus	4.7e-15	41.5
WP_012673345.1\|1176244_1177312_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	8.9e-114	59.3
WP_094189578.1\|1177895_1178727_+\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_094745768.1\|1178838_1179849_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_007551398.1\|1179962_1180925_+	J domain-containing protein	NA	NA	NA	NA
WP_012673347.1\|1180892_1182182_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_012673348.1\|1182178_1182769_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041573611.1\|1183051_1183513_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_006280496.1\|1183566_1184253_+	DsbA family protein	NA	NA	NA	NA
WP_007551133.1\|1184282_1184561_-	DUF2671 domain-containing protein	NA	NA	NA	NA
WP_012673350.1\|1184812_1185460_+	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	2.1e-17	33.3
WP_012673351.1\|1185461_1186115_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_012673352.1\|1186111_1186393_-	hypothetical protein	NA	NA	NA	NA
WP_012673353.1\|1186566_1188168_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	4.4e-40	36.2
WP_038199344.1\|1188189_1188504_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_007550484.1\|1189094_1189787_+	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_041582625.1\|1190105_1190999_+	RNA polymerase factor sigma-32	A0A248SJA5	Salicola_phage	6.9e-27	29.4
WP_006279310.1\|1190991_1191489_+	hypothetical protein	NA	NA	NA	NA
WP_012673355.1\|1191612_1192770_+	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	4.0e-51	36.1
WP_007548562.1\|1192875_1194258_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_012673356.1\|1194348_1195086_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_15

1200793 : 1266506

Orpheovirus(12.5%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012673359.1\|1200793_1202020_+\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	2.5e-27	26.7
WP_007550279.1\|1202040_1202793_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-24	29.3
WP_012673360.1\|1203917_1205261_-	signal recognition particle protein	NA	NA	NA	NA
WP_012673361.1\|1205245_1206805_-	cation:proton antiporter	NA	NA	NA	NA
WP_012673362.1\|1207108_1209868_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_006279640.1\|1209913_1210345_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_012673363.1\|1210349_1210901_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_012673364.1\|1210901_1213238_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_012673365.1\|1213246_1214365_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_006279484.1\|1214464_1214743_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_007548735.1\|1214717_1215044_-	cell division protein ZapA	NA	NA	NA	NA
WP_007548734.1\|1215116_1215395_-	integration host factor subunit beta	NA	NA	NA	NA
WP_012673366.1\|1215424_1217077_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_012673367.1\|1217216_1217882_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_167884945.1\|1219447_1219588_+	hypothetical protein	NA	NA	NA	NA
WP_007548725.1\|1219620_1220298_+	hypothetical protein	NA	NA	NA	NA
WP_007548724.1\|1220418_1221945_+	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_162530961.1\|1222090_1222234_+	hypothetical protein	NA	NA	NA	NA
WP_006280314.1\|1222199_1223015_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	6.5e-24	30.3
WP_012673369.1\|1223031_1223625_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_012673370.1\|1223767_1225921_+	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_012673371.1\|1225982_1227773_+	hypothetical protein	NA	NA	NA	NA
WP_039963982.1\|1227763_1228726_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	4.9e-10	28.4
WP_007549043.1\|1228737_1229088_-	diacylglycerol kinase	NA	NA	NA	NA
WP_006280509.1\|1230021_1231218_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_007549047.1\|1232043_1232565_+	cytochrome b	NA	NA	NA	NA
WP_012673374.1\|1232570_1233599_+	nitronate monooxygenase	NA	NA	NA	NA
WP_012673375.1\|1233721_1234933_+	hypothetical protein	NA	NA	NA	NA
WP_012673376.1\|1235034_1235409_+	hypothetical protein	NA	NA	NA	NA
WP_006280308.1\|1235453_1237808_+	type VI secretion protein	NA	NA	NA	NA
WP_012673377.1\|1237788_1240638_+	hypothetical protein	NA	NA	NA	NA
WP_006280399.1\|1240761_1241247_+	hypothetical protein	NA	NA	NA	NA
WP_007551030.1\|1241243_1241735_-	hypothetical protein	NA	NA	NA	NA
WP_006280214.1\|1241805_1243170_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_007550761.1\|1243239_1244064_+	hypothetical protein	NA	NA	NA	NA
WP_006280216.1\|1244109_1245330_-	NTPase	R9TRQ8	Vibrio_phage	3.5e-13	25.5
WP_006280217.1\|1245333_1245939_-	recombination protein RecR	NA	NA	NA	NA
WP_007548917.1\|1247034_1247454_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	3.4e-16	37.4
WP_006279845.1\|1247572_1248370_+	hypothetical protein	NA	NA	NA	NA
WP_007548918.1\|1248370_1249318_+	ferrochelatase	NA	NA	NA	NA
WP_006280195.1\|1249388_1250186_+	hypothetical protein	NA	NA	NA	NA
WP_012673378.1\|1250189_1251350_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_006280198.1\|1251465_1252020_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_006280200.1\|1252021_1253512_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	4.7e-36	30.0
WP_007548562.1\|1253603_1254986_-\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_006280304.1\|1255070_1256012_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_006280305.1\|1256004_1256796_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_006279836.1\|1256941_1257202_+	acyl carrier protein	NA	NA	NA	NA
WP_007549725.1\|1257215_1258487_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_007548562.1\|1258735_1260118_+\|transposase	IS66-like element ISWen3 family transposase	NA	NA	NA	NA
WP_007549225.1\|1262517_1263795_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_012673379.1\|1263804_1264659_+	FAD-dependent thymidylate synthase	M4QT16	Loktanella_phage	3.0e-80	53.3
WP_094189578.1\|1265673_1266506_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

1318515 : 1405799

Wolbachia_phage(50.0%)

capsid,tRNA,plate,head,portal,protease,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012673393.1\|1318515_1320354_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5ESM9	Bathycoccus_sp._RCC1105_virus	3.5e-118	43.4
WP_007548788.1\|1320366_1321662_-\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	6.1e-08	26.7
WP_007548789.1\|1321846_1322326_-	OmpA family protein	NA	NA	NA	NA
WP_007548790.1\|1322601_1324023_+	carboxypeptidase	NA	NA	NA	NA
WP_007548791.1\|1324046_1325123_+	rod shape-determining protein	NA	NA	NA	NA
WP_007548792.1\|1325439_1326552_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_012673394.1\|1327501_1328725_+	hypothetical protein	NA	NA	NA	NA
WP_012673395.1\|1328794_1329310_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.5e-37	47.6
WP_007548451.1\|1329975_1331121_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_006280380.1\|1331208_1331829_+	hypothetical protein	NA	NA	NA	NA
WP_006280381.1\|1331812_1332364_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_012673396.1\|1332408_1333446_-	hypothetical protein	NA	NA	NA	NA
WP_039963711.1\|1333582_1334290_+	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_039963709.1\|1334465_1334774_+	hypothetical protein	NA	NA	NA	NA
WP_012673398.1\|1334776_1336324_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_012673399.1\|1336344_1337274_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_012673400.1\|1337328_1339050_-	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	4.2e-238	78.5
WP_007548442.1\|1338958_1339240_-	hypothetical protein	A0A1B2LRU8	Wolbachia_phage	7.2e-31	76.9
WP_007548441.1\|1339454_1340267_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012673401.1\|1340434_1341595_-	hypothetical protein	Q9JML5	Wolbachia_phage	1.8e-189	80.9
WP_012673402.1\|1341594_1342404_-\|plate	baseplate J/gp47 family protein	Q9JML6	Wolbachia_phage	1.6e-110	77.6
WP_007548437.1\|1342406_1342742_-	GPW/gp25 family protein	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.1e-46	85.6
WP_049749693.1\|1342744_1342981_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_094745768.1\|1343011_1344022_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_094189578.1\|1344059_1344892_-\|transposase	IS5-like element ISWpi1 family transposase	NA	NA	NA	NA
WP_007548312.1\|1345027_1345492_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	5.5e-60	68.8
WP_012673403.1\|1345768_1347103_-\|transposase	IS110-like element ISWpi13 family transposase	Q9JMN8	Wolbachia_phage	5.9e-216	83.5
WP_167884947.1\|1348166_1349330_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_007548323.1\|1349462_1349768_-	hypothetical protein	Q9JMM1	Wolbachia_phage	7.8e-39	78.9
WP_007548325.1\|1349850_1350852_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	2.2e-186	94.9
WP_007548326.1\|1350903_1351275_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	5.4e-50	87.7
WP_007548328.1\|1351341_1352832_-	ATPase AAA	NA	NA	NA	NA
WP_044471312.1\|1352917_1353976_-	S49 family peptidase	Q9JMP1	Wolbachia_phage	2.0e-134	71.9
WP_039963649.1\|1354000_1355431_-\|portal	phage portal protein	Q75QM9	Wolbachia_phage	1.5e-241	86.6
WP_006280957.1\|1355430_1356126_-	glycoside hydrolase family 25 protein	A0A286N2U4	Arthrobacter_phage	3.1e-06	26.9
WP_007548330.1\|1356122_1356347_-	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	8.5e-27	82.4
WP_007548331.1\|1356336_1358163_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	0.0e+00	85.9
WP_007548332.1\|1358453_1359476_-\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA
WP_007548333.1\|1360039_1360687_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_007548336.1\|1360793_1361186_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_012673405.1\|1362627_1362837_-	hypothetical protein	NA	NA	NA	NA
WP_012673406.1\|1362968_1364294_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_006280334.1\|1364290_1364812_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_006279362.1\|1364786_1365329_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA
WP_007548592.1\|1365909_1366890_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_012673407.1\|1366896_1367493_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.6e-24	40.4
WP_006280123.1\|1367496_1368279_-	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_007548591.1\|1368464_1368920_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_007548590.1\|1368922_1369237_-	NADH:ubiquinone oxidoreductase	NA	NA	NA	NA
WP_006280124.1\|1369301_1370768_+	cation:proton antiporter	NA	NA	NA	NA
WP_012673408.1\|1370821_1371925_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_006280126.1\|1371950_1373336_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	8.4e-56	31.9
WP_006280127.1\|1373355_1373865_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_007548585.1\|1374265_1375240_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.3e-07	29.1
WP_007548584.1\|1375236_1375809_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_007548583.1\|1376671_1377001_-	SWIM zinc finger family protein	NA	NA	NA	NA
WP_007548582.1\|1377964_1379215_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	6.4e-63	34.9
WP_010963049.1\|1379216_1379456_-	hypothetical protein	NA	NA	NA	NA
WP_006279567.1\|1379446_1379764_-	ribosome silencing factor	NA	NA	NA	NA
WP_006280339.1\|1379886_1380561_+	AAA family ATPase	NA	NA	NA	NA
WP_006279569.1\|1380553_1381042_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_006280340.1\|1381038_1381806_+	TatD family hydrolase	NA	NA	NA	NA
WP_007548577.1\|1381833_1382784_-	malate dehydrogenase	NA	NA	NA	NA
WP_007548576.1\|1382787_1383360_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_006279574.1\|1383352_1383859_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_007548575.1\|1383862_1384216_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_007548574.1\|1384234_1384603_-	HIT domain-containing protein	NA	NA	NA	NA
WP_006279579.1\|1384606_1384864_-	hypothetical protein	NA	NA	NA	NA
WP_012673409.1\|1384880_1385654_-	hypothetical protein	NA	NA	NA	NA
WP_012673410.1\|1385837_1387367_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_012673411.1\|1387417_1388368_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_077188447.1\|1389233_1389350_-	hypothetical protein	NA	NA	NA	NA
WP_041582670.1\|1389995_1391891_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.3e-88	30.5
WP_007548662.1\|1391928_1393530_+	hypothetical protein	NA	NA	NA	NA
WP_039963871.1\|1393572_1394694_+	hypothetical protein	NA	NA	NA	NA
WP_012673413.1\|1394758_1395967_+	5-aminolevulinate synthase	D2TEZ5	Emiliania_huxleyi_virus	2.5e-27	27.4
WP_012673414.1\|1396085_1396781_-	inositol monophosphatase family protein	NA	NA	NA	NA
WP_012673415.1\|1396789_1397356_-	elongation factor P	NA	NA	NA	NA
WP_006279718.1\|1397418_1397925_-	16S rRNA processing protein RimM	NA	NA	NA	NA
WP_006280106.1\|1397939_1399115_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	4.5e-34	30.2
WP_006280108.1\|1399181_1400609_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-20	30.9
WP_007548671.1\|1400798_1401266_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_006280110.1\|1401282_1402380_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_012673416.1\|1403050_1403371_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_007548675.1\|1403578_1403935_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_012673417.1\|1403952_1404294_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_007548332.1\|1404776_1405799_+\|transposase	IS110-like element ISWen2 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_012416.1|WP_012673405.1|1362627_1362837_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_012416.1|WP_012673405.1|1362627_1362837_-|hypothetical-protein

1362627_1362837_-

69 aa aa

1318515-1405799

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_012416_6	Orphan	6.4\|419202\|45\|NC_012416\|CRT	419202-419246	45	1327296-1327340	0

1. spacer 6.4|419202|45|NC_012416|CRT matches to NC_012416 position: 1327296-1327340, mismatch: 0

atgttgagagataccgcgaatgaatcgcggtatgacggtgtagat	CRISPR spacer
atgttgagagataccgcgaatgaatcgcggtatgacggtgtagat	Protospacer
*********************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012416

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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