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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012037 Caldicellulosiruptor bescii DSM 6725 plasmid pATHE02, complete sequence 0 crisprs NA 0 0 0 0
NC_012036 Caldicellulosiruptor bescii DSM 6725 plasmid pATHE01, complete sequence 0 crisprs NA 0 0 0 0
NC_012034 Caldicellulosiruptor bescii DSM 6725, complete genome 9 crisprs cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csx1,cas10,csm3gr7,csx19,csa3,Cas14b_CAS-V-F,cas14k,DEDDh,cas14j,Cas9_archaeal,c2c9_V-U4,TnpB_regular.1,cas7b,cas8b1,csm5gr7,csm4gr5,csm2gr11,csx20,WYL 0 30 5 0

Results visualization

1. NC_012034
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_1 151654-160464 I-A
134 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csx1,cas10,csm3gr7,csx19

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_2 164244-165518 I-A
19 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,csx1,cas10,csm3gr7,csx19

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_3 2788959-2789130 TypeI NA
2 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_4 2803920-2807402 TypeV,TypeI-B NA
52 spacers
cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,cas14k

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_5 2828426-2831032 TypeV,TypeIII-A NA
39 spacers
csx1,cas14k

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_6 2847036-2847194 TypeIII NA
2 spacers
cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_7 2856808-2857631 TypeIII NA
12 spacers
cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,csx20

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_8 2866258-2868585 TypeIII NA
35 spacers
csx20,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012034_9 2872661-2873020 Unclear NA
5 spacers
csx20,csx1

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012034_3 3.2|2789073|23|NC_012034|PILER-CR 2789073-2789095 23 MT774399 CrAssphage cr109_1, complete genome 14391-14413 1 0.957
NC_012034_3 3.2|2789073|23|NC_012034|PILER-CR 2789073-2789095 23 MT774397 CrAssphage cr56_1, complete genome 88207-88229 1 0.957
NC_012034_3 3.2|2789073|23|NC_012034|PILER-CR 2789073-2789095 23 MT774403 CrAssphage cr113_1, complete genome 91496-91518 1 0.957
NC_012034_3 3.2|2789073|23|NC_012034|PILER-CR 2789073-2789095 23 MN855593 Siphoviridae sp. isolate 195, complete genome 3197-3219 2 0.913
NC_012034_3 3.2|2789073|23|NC_012034|PILER-CR 2789073-2789095 23 NC_019737 Crinalium epipsammum PCC 9333 plasmid pCRI9333.07, complete sequence 21813-21835 3 0.87
NC_012034_1 1.84|157121|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 157121-157156 36 NZ_LR214939 Mycoplasma salivarium strain NCTC10113 plasmid 2 467690-467725 7 0.806
NC_012034_1 1.106|158558|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT 158558-158594 37 MN693462 Marine virus AFVG_25M534, complete genome 831-867 7 0.811
NC_012034_3 3.1|2789002|28|NC_012034|PILER-CR 2789002-2789029 28 NZ_CP033461 Brevibacillus laterosporus strain 1821L plasmid p1821L01, complete sequence 25612-25639 7 0.75
NC_012034_3 3.4|2789060|36|NC_012034|CRISPRCasFinder 2789060-2789095 36 MT774397 CrAssphage cr56_1, complete genome 88202-88237 7 0.806
NC_012034_4 4.15|2804881|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2804881-2804916 36 NC_017235 Borreliella afzelii PKo plasmid lp28-7, complete sequence 5947-5982 7 0.806
NC_012034_5 5.1|2828455|38|NC_012034|PILER-CR 2828455-2828492 38 MN013189 Microcystis phage Mic1, complete genome 87325-87362 7 0.816
NC_012034_5 5.14|2829309|34|NC_012034|PILER-CR 2829309-2829342 34 MN693735 Marine virus AFVG_250M590, complete genome 32144-32177 7 0.794
NC_012034_5 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT 2829310-2829342 33 MN693735 Marine virus AFVG_250M590, complete genome 32144-32176 7 0.788
NC_012034_8 8.22|2867663|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2867663-2867697 35 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 598046-598080 7 0.8
NC_012034_3 3.4|2789060|36|NC_012034|CRISPRCasFinder 2789060-2789095 36 MT774399 CrAssphage cr109_1, complete genome 14383-14418 8 0.778
NC_012034_3 3.4|2789060|36|NC_012034|CRISPRCasFinder 2789060-2789095 36 MT774403 CrAssphage cr113_1, complete genome 91491-91526 8 0.778
NC_012034_5 5.14|2829309|34|NC_012034|PILER-CR 2829309-2829342 34 NZ_AP014824 Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence 28607-28640 8 0.765
NC_012034_5 5.14|2829309|34|NC_012034|PILER-CR 2829309-2829342 34 NZ_AP019836 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p1, complete sequence 2425-2458 8 0.765
NC_012034_5 5.14|2829309|34|NC_012034|PILER-CR 2829309-2829342 34 NZ_AP019837 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p2, complete sequence 7729-7762 8 0.765
NC_012034_5 5.44|2828785|35|NC_012034|CRISPRCasFinder,CRT 2828785-2828819 35 CP024686 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence 6485-6519 8 0.771
NC_012034_5 5.47|2828981|35|NC_012034|CRISPRCasFinder,CRT 2828981-2829015 35 NZ_CP014325 Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence 8988-9022 8 0.771
NC_012034_5 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT 2829310-2829342 33 NZ_AP014824 Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence 28608-28640 8 0.758
NC_012034_5 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT 2829310-2829342 33 NZ_AP019836 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p1, complete sequence 2426-2458 8 0.758
NC_012034_5 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT 2829310-2829342 33 NZ_AP019837 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p2, complete sequence 7729-7761 8 0.758
NC_012034_5 5.55|2829506|36|NC_012034|CRISPRCasFinder,CRT 2829506-2829541 36 NZ_AP019839 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence 2350-2385 8 0.778
NC_012034_5 5.68|2830367|36|NC_012034|CRISPRCasFinder,CRT 2830367-2830402 36 NZ_AP019839 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence 2350-2385 8 0.778
NC_012034_1 1.66|155943|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 155943-155978 36 NZ_CP054046 Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence 75744-75779 9 0.75
NC_012034_1 1.84|157121|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 157121-157156 36 MN694383 Marine virus AFVG_250M176, complete genome 9874-9909 9 0.75
NC_012034_4 4.15|2804881|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2804881-2804916 36 MN693020 Marine virus AFVG_117M64, complete genome 4623-4658 9 0.75
NC_012034_5 5.6|2828784|36|NC_012034|PILER-CR 2828784-2828819 36 CP024686 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence 6485-6520 9 0.75
NC_012034_5 5.17|2829505|37|NC_012034|PILER-CR 2829505-2829541 37 NZ_AP019839 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence 2350-2386 9 0.757
NC_012034_5 5.30|2830366|37|NC_012034|PILER-CR 2830366-2830402 37 NZ_AP019839 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence 2350-2386 9 0.757
NC_012034_5 5.39|2828456|37|NC_012034|CRISPRCasFinder,CRT 2828456-2828492 37 MN013189 Microcystis phage Mic1, complete genome 87326-87362 9 0.757
NC_012034_5 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT 2829310-2829342 33 MN694482 Marine virus AFVG_250M11, complete genome 99-131 9 0.727
NC_012034_5 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT 2829310-2829342 33 MN694482 Marine virus AFVG_250M11, complete genome 39110-39142 9 0.727
NC_012034_1 1.103|158362|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT 158362-158398 37 NZ_CP051683 Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence 6168-6204 10 0.73
NC_012034_4 4.18|2805083|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2805083-2805119 37 NC_008014 Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence 159726-159762 10 0.73
NC_012034_4 4.18|2805083|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2805083-2805119 37 NC_020130 Lawsonia intracellularis N343 plasmid 3, complete sequence 159748-159784 10 0.73
NC_012034_5 5.14|2829309|34|NC_012034|PILER-CR 2829309-2829342 34 MN694482 Marine virus AFVG_250M11, complete genome 99-132 10 0.706
NC_012034_5 5.14|2829309|34|NC_012034|PILER-CR 2829309-2829342 34 MN694482 Marine virus AFVG_250M11, complete genome 39110-39143 10 0.706
NC_012034_5 5.14|2829309|34|NC_012034|PILER-CR 2829309-2829342 34 NZ_CP018869 Sporosarcina sp. P37 plasmid pSporoP37, complete sequence 8778-8811 10 0.706
NC_012034_5 5.47|2828981|35|NC_012034|CRISPRCasFinder,CRT 2828981-2829015 35 NZ_CP009065 Borreliella afzelii K78 plasmid lp28-4, complete sequence 23266-23300 10 0.714
NC_012034_5 5.47|2828981|35|NC_012034|CRISPRCasFinder,CRT 2828981-2829015 35 NC_017234 Borreliella afzelii PKo plasmid lp28-4, complete sequence 162-196 10 0.714
NC_012034_7 7.3|2856969|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2856969-2857004 36 MK448708 Streptococcus phage Javan23, complete genome 669-704 10 0.722
NC_012034_7 7.3|2856969|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2856969-2857004 36 MK448897 Streptococcus phage Javan28, complete genome 669-704 10 0.722
NC_012034_8 8.6|2866617|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2866617-2866651 35 NZ_CP026535 Bacillus velezensis strain DKU_NT_04 plasmid p2_DKU_NT_04, complete sequence 16190-16224 10 0.714
NC_012034_8 8.7|2866682|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2866682-2866716 35 NZ_CP026535 Bacillus velezensis strain DKU_NT_04 plasmid p2_DKU_NT_04, complete sequence 16190-16224 10 0.714
NC_012034_8 8.8|2866747|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2866747-2866781 35 NZ_CP026535 Bacillus velezensis strain DKU_NT_04 plasmid p2_DKU_NT_04, complete sequence 16190-16224 10 0.714
NC_012034_8 8.10|2866877|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2866877-2866911 35 NZ_CP019747 Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-4, complete sequence 40915-40949 10 0.714
NC_012034_8 8.10|2866877|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2866877-2866911 35 NZ_CP019738 Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-4, complete sequence 29246-29280 10 0.714
NC_012034_8 8.11|2866942|33|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2866942-2866974 33 MN694331 Marine virus AFVG_250M889, complete genome 29537-29569 10 0.697
NC_012034_4 4.15|2804881|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2804881-2804916 36 HQ634195 Vibrio phage eugene 12A10 genomic sequence 20281-20316 11 0.694
NC_012034_8 8.9|2866812|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT 2866812-2866846 35 NZ_CP026317 Vibrio campbellii strain BoB-90 plasmid unnamed 1, complete sequence 158152-158186 11 0.686
NC_012034_9 9.1|2872692|35|NC_012034|CRISPRCasFinder 2872692-2872726 35 MN694358 Marine virus AFVG_250M310, complete genome 12117-12151 11 0.686
NC_012034_9 9.2|2872758|35|NC_012034|CRISPRCasFinder 2872758-2872792 35 MN694358 Marine virus AFVG_250M310, complete genome 12117-12151 11 0.686

1. spacer 3.2|2789073|23|NC_012034|PILER-CR matches to MT774399 (CrAssphage cr109_1, complete genome) position: , mismatch: 1, identity: 0.957

ttgatatttttcatagttaacac	CRISPR spacer
ttgatatttttcatagttaaaac	Protospacer
******************** **

2. spacer 3.2|2789073|23|NC_012034|PILER-CR matches to MT774397 (CrAssphage cr56_1, complete genome) position: , mismatch: 1, identity: 0.957

ttgatatttttcatagttaacac	CRISPR spacer
ttgatatttttcatagttaaaac	Protospacer
******************** **

3. spacer 3.2|2789073|23|NC_012034|PILER-CR matches to MT774403 (CrAssphage cr113_1, complete genome) position: , mismatch: 1, identity: 0.957

ttgatatttttcatagttaacac	CRISPR spacer
ttgatatttttcatagttaaaac	Protospacer
******************** **

4. spacer 3.2|2789073|23|NC_012034|PILER-CR matches to MN855593 (Siphoviridae sp. isolate 195, complete genome) position: , mismatch: 2, identity: 0.913

ttgatatttttcatagttaacac	CRISPR spacer
tagatatgtttcatagttaacac	Protospacer
* ***** ***************

5. spacer 3.2|2789073|23|NC_012034|PILER-CR matches to NC_019737 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.07, complete sequence) position: , mismatch: 3, identity: 0.87

ttgatatttttcatagttaacac	CRISPR spacer
ttgatatttttcatagttacttc	Protospacer
******************* . *

6. spacer 1.84|157121|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.806

aaagatataaaaaaatttaaagacaaagcatacttc	CRISPR spacer
aaagatatgaaaaaatttaaagaaaaatttgactac	Protospacer
********.************** *** .  *** *

7. spacer 1.106|158558|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to MN693462 (Marine virus AFVG_25M534, complete genome) position: , mismatch: 7, identity: 0.811

attgaacgcagaggtgaaggtgatgactg-gtattatg	CRISPR spacer
gctgaacgcagaaatgaaggtgatgactgtagattat-	Protospacer
..**********..*************** . ***** 

8. spacer 3.1|2789002|28|NC_012034|PILER-CR matches to NZ_CP033461 (Brevibacillus laterosporus strain 1821L plasmid p1821L01, complete sequence) position: , mismatch: 7, identity: 0.75

cgtaaaaaataaggagtatgtaaggggt	CRISPR spacer
attaaaaaataaggaggatgtaacatga	Protospacer
  ************** ****** . * 

9. spacer 3.4|2789060|36|NC_012034|CRISPRCasFinder matches to MT774397 (CrAssphage cr56_1, complete genome) position: , mismatch: 7, identity: 0.806

taatt--ttgatatttttcatagttaacacttatcaga	CRISPR spacer
--attgattgatatttttcatagttaaaacatatatgc	Protospacer
  ***  ******************** ** ***  * 

10. spacer 4.15|2804881|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NC_017235 (Borreliella afzelii PKo plasmid lp28-7, complete sequence) position: , mismatch: 7, identity: 0.806

ttctttttaggttttgttgattgttttgaaatttta	CRISPR spacer
ctagtaataggttttgttgattgcttttaaatttta	Protospacer
.*  *  ****************.*** ********

11. spacer 5.1|2828455|38|NC_012034|PILER-CR matches to MN013189 (Microcystis phage Mic1, complete genome) position: , mismatch: 7, identity: 0.816

taggctt-tctaaaatttcttcaacgtcttttttgcttg	CRISPR spacer
-atgcttacctaaaatttcttcaatttcttttttgcatt	Protospacer
 * **** .***************. ********** * 

12. spacer 5.14|2829309|34|NC_012034|PILER-CR matches to MN693735 (Marine virus AFVG_250M590, complete genome) position: , mismatch: 7, identity: 0.794

tgcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
tgttaaagggcaaggactttttttattttataaa	Protospacer
**. ***.. **** ************** ****

13. spacer 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT matches to MN693735 (Marine virus AFVG_250M590, complete genome) position: , mismatch: 7, identity: 0.788

gcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
gttaaagggcaaggactttttttattttataaa	Protospacer
*. ***.. **** ************** ****

14. spacer 8.22|2867663|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.8

ccgcatgattggcagtggatagcagagcttgacga--	CRISPR spacer
ccgcatgattgccattggatagcaga--ttggtcaac	Protospacer
*********** ** ***********  ***.. *  

15. spacer 3.4|2789060|36|NC_012034|CRISPRCasFinder matches to MT774399 (CrAssphage cr109_1, complete genome) position: , mismatch: 8, identity: 0.778

taatt--ttgatatttttcatagttaacacttatcaga	CRISPR spacer
--actgattgatatttttcatagttaaaacatatatgc	Protospacer
  *.*  ******************** ** ***  * 

16. spacer 3.4|2789060|36|NC_012034|CRISPRCasFinder matches to MT774403 (CrAssphage cr113_1, complete genome) position: , mismatch: 8, identity: 0.778

taatt--ttgatatttttcatagttaacacttatcaga	CRISPR spacer
--actgattgatatttttcatagttaaaacatatatgc	Protospacer
  *.*  ******************** ** ***  * 

17. spacer 5.14|2829309|34|NC_012034|PILER-CR matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 8, identity: 0.765

tgcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
tataaaaaatcaagtatttcttttattttctctt	Protospacer
*..*************.**.*********.*   

18. spacer 5.14|2829309|34|NC_012034|PILER-CR matches to NZ_AP019836 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p1, complete sequence) position: , mismatch: 8, identity: 0.765

tgcaaaaaatcaagtactttttttattttttaaa-----	CRISPR spacer
ttcaaaaaatcaagtccttttttca-----taaaaattt	Protospacer
* ************* *******.*     ****     

19. spacer 5.14|2829309|34|NC_012034|PILER-CR matches to NZ_AP019837 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p2, complete sequence) position: , mismatch: 8, identity: 0.765

tgcaaaaaatcaagtactttttttattttttaaa-----	CRISPR spacer
ttcaaaaaatcaagtccttttttca-----taaaaattt	Protospacer
* ************* *******.*     ****     

20. spacer 5.44|2828785|35|NC_012034|CRISPRCasFinder,CRT matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 8, identity: 0.771

caatattttcatagctttcatacacataattttca	CRISPR spacer
gaatatttttatagctttcatacaaatcttgtgct	Protospacer
 ********.************** **  * * * 

21. spacer 5.47|2828981|35|NC_012034|CRISPRCasFinder,CRT matches to NZ_CP014325 (Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence) position: , mismatch: 8, identity: 0.771

tcttaagaccactttttgttttaacaagtttaaca	CRISPR spacer
ttctaaccacattttttattttaacaagtttaact	Protospacer
*..***   **.*****.**************** 

22. spacer 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 8, identity: 0.758

gcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
ataaaaaatcaagtatttcttttattttctctt	Protospacer
..*************.**.*********.*   

23. spacer 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT matches to NZ_AP019836 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p1, complete sequence) position: , mismatch: 8, identity: 0.758

gcaaaaaatcaagtactttttttattttttaaa-----	CRISPR spacer
tcaaaaaatcaagtccttttttca-----taaaaattt	Protospacer
 ************* *******.*     ****     

24. spacer 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT matches to NZ_AP019837 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p2, complete sequence) position: , mismatch: 8, identity: 0.758

gcaaaaaatcaagtactttttttattttttaaa-----	CRISPR spacer
tcaaaaaatcaagtccttttttca-----taaaaattt	Protospacer
 ************* *******.*     ****     

25. spacer 5.55|2829506|36|NC_012034|CRISPRCasFinder,CRT matches to NZ_AP019839 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence) position: , mismatch: 8, identity: 0.778

aagaaatagagagaaaaagaaaagaagaacaacaaa	CRISPR spacer
gggggatagagagaaaaaaaaaagaagaaaaagtaa	Protospacer
..*..*************.********** **  **

26. spacer 5.68|2830367|36|NC_012034|CRISPRCasFinder,CRT matches to NZ_AP019839 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence) position: , mismatch: 8, identity: 0.778

aagaaatagagagaaaaagaaaagaagaacaacaaa	CRISPR spacer
gggggatagagagaaaaaaaaaagaagaaaaagtaa	Protospacer
..*..*************.********** **  **

27. spacer 1.66|155943|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

aaacaaaggagattcagcaacagattgaagtagtaa	CRISPR spacer
atgaaaatgacattcagcaacagattgaagacgttg	Protospacer
* . *** ** *******************  ** .

28. spacer 1.84|157121|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to MN694383 (Marine virus AFVG_250M176, complete genome) position: , mismatch: 9, identity: 0.75

aaagatataaaaaaatttaaagacaaagcatacttc	CRISPR spacer
gagaatattaaaaaatttaaagacaaagaatgggta	Protospacer
.*..**** ******************* **.  * 

29. spacer 4.15|2804881|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 9, identity: 0.75

ttctttttaggttttgttgattgttttgaaatttta	CRISPR spacer
ttctttttaggtttgtttgattgtttaaaatctact	Protospacer
**************  ********** .** .* . 

30. spacer 5.6|2828784|36|NC_012034|PILER-CR matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 9, identity: 0.75

tcaatattttcatagctttcatacacataattttca	CRISPR spacer
ggaatatttttatagctttcatacaaatcttgtgct	Protospacer
  ********.************** **  * * * 

31. spacer 5.17|2829505|37|NC_012034|PILER-CR matches to NZ_AP019839 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence) position: , mismatch: 9, identity: 0.757

taagaaatagagagaaaaagaaaagaagaacaacaaa	CRISPR spacer
agggggatagagagaaaaaaaaaagaagaaaaagtaa	Protospacer
 ..*..*************.********** **  **

32. spacer 5.30|2830366|37|NC_012034|PILER-CR matches to NZ_AP019839 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p4, complete sequence) position: , mismatch: 9, identity: 0.757

taagaaatagagagaaaaagaaaagaagaacaacaaa	CRISPR spacer
agggggatagagagaaaaaaaaaagaagaaaaagtaa	Protospacer
 ..*..*************.********** **  **

33. spacer 5.39|2828456|37|NC_012034|CRISPRCasFinder,CRT matches to MN013189 (Microcystis phage Mic1, complete genome) position: , mismatch: 9, identity: 0.757

aggctttctaaaatttcttcaacgtcttttttgcttg	CRISPR spacer
tgcttacctaaaatttcttcaatttcttttttgcatt	Protospacer
 * .* .***************. ********** * 

34. spacer 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 9, identity: 0.727

gcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
gatctaaagcaagtactttttttatattttttt	Protospacer
*    *** **************** ****   

35. spacer 5.52|2829310|33|NC_012034|CRISPRCasFinder,CRT matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 9, identity: 0.727

gcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
gatctaaagcaagtactttttttatattttttt	Protospacer
*    *** **************** ****   

36. spacer 1.103|158362|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051683 (Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

----cacactgaaaaagaaatcaatacataaagatataaat	CRISPR spacer
tctttatatcg----agatatcaatacataatgatataaat	Protospacer
    .*.*..*    *** ************ *********

37. spacer 4.18|2805083|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.73

actctttctcttctctttctctctcttgcatcatcac-----	CRISPR spacer
tttctttctcttctctttctttcttttg-----tcgctcttg	Protospacer
 .******************.***.***     **.*     

38. spacer 4.18|2805083|37|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.73

actctttctcttctctttctctctcttgcatcatcac-----	CRISPR spacer
tttctttctcttctctttctttcttttg-----tcgctcttg	Protospacer
 .******************.***.***     **.*     

39. spacer 5.14|2829309|34|NC_012034|PILER-CR matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 10, identity: 0.706

tgcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
cgatctaaagcaagtactttttttatattttttt	Protospacer
.*    *** **************** ****   

40. spacer 5.14|2829309|34|NC_012034|PILER-CR matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 10, identity: 0.706

tgcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
cgatctaaagcaagtactttttttatattttttt	Protospacer
.*    *** **************** ****   

41. spacer 5.14|2829309|34|NC_012034|PILER-CR matches to NZ_CP018869 (Sporosarcina sp. P37 plasmid pSporoP37, complete sequence) position: , mismatch: 10, identity: 0.706

tgcaaaaaatcaagtactttttttattttttaaa	CRISPR spacer
tgcaaaacatcaaatacttttttttgttcgcttc	Protospacer
******* *****.**********  **. .   

42. spacer 5.47|2828981|35|NC_012034|CRISPRCasFinder,CRT matches to NZ_CP009065 (Borreliella afzelii K78 plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.714

tcttaagaccactttttgttttaacaagtttaaca	CRISPR spacer
tgtattaaccactttttgttttaaagagtttattt	Protospacer
* *   .***************** .****** . 

43. spacer 5.47|2828981|35|NC_012034|CRISPRCasFinder,CRT matches to NC_017234 (Borreliella afzelii PKo plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.714

tcttaagaccactttttgttttaacaagtttaaca	CRISPR spacer
tgtattaaccactttttgttttaaagagtttattt	Protospacer
* *   .***************** .****** . 

44. spacer 7.3|2856969|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to MK448708 (Streptococcus phage Javan23, complete genome) position: , mismatch: 10, identity: 0.722

aaagtttatctatttcttcttgcgttttatttgttt	CRISPR spacer
gtcttttttttatttcttcttgcgttttattgtaat	Protospacer
.   *** *.*********************    *

45. spacer 7.3|2856969|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to MK448897 (Streptococcus phage Javan28, complete genome) position: , mismatch: 10, identity: 0.722

aaagtttatctatttcttcttgcgttttatttgttt	CRISPR spacer
gtcttttttttatttcttcttgcgttttattgtaat	Protospacer
.   *** *.*********************    *

46. spacer 8.6|2866617|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026535 (Bacillus velezensis strain DKU_NT_04 plasmid p2_DKU_NT_04, complete sequence) position: , mismatch: 10, identity: 0.714

attcttctttcttttgtttttcatagttttcctga	CRISPR spacer
attcatcgttcttttgtttttcataagtcattcta	Protospacer
**** ** *****************. *. ... *

47. spacer 8.7|2866682|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026535 (Bacillus velezensis strain DKU_NT_04 plasmid p2_DKU_NT_04, complete sequence) position: , mismatch: 10, identity: 0.714

attcttctttcttttgtttttcatagttttcctga	CRISPR spacer
attcatcgttcttttgtttttcataagtcattcta	Protospacer
**** ** *****************. *. ... *

48. spacer 8.8|2866747|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026535 (Bacillus velezensis strain DKU_NT_04 plasmid p2_DKU_NT_04, complete sequence) position: , mismatch: 10, identity: 0.714

attcttctttcttttgtttttcatagttttcctga	CRISPR spacer
attcatcgttcttttgtttttcataagtcattcta	Protospacer
**** ** *****************. *. ... *

49. spacer 8.10|2866877|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019747 (Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-4, complete sequence) position: , mismatch: 10, identity: 0.714

ccattaacatggagatatgcttccttctgtgcaag	CRISPR spacer
ttttttccatggagagatgctcccttctgtgcgta	Protospacer
.. **  ******** *****.**********. .

50. spacer 8.10|2866877|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019738 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-4, complete sequence) position: , mismatch: 10, identity: 0.714

ccattaacatggagatatgcttccttctgtgcaag	CRISPR spacer
ttttttccatggagagatgctcccttctgtgcgta	Protospacer
.. **  ******** *****.**********. .

51. spacer 8.11|2866942|33|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to MN694331 (Marine virus AFVG_250M889, complete genome) position: , mismatch: 10, identity: 0.697

tagataaacagttttattcacaaatggggtatg	CRISPR spacer
tagataaacagttttatacgcaaacgattcgcc	Protospacer
***************** *.****.*.  ... 

52. spacer 4.15|2804881|36|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to HQ634195 (Vibrio phage eugene 12A10 genomic sequence) position: , mismatch: 11, identity: 0.694

ttctttttaggttttgttgattgttttgaaatttta	CRISPR spacer
gatgaagaaggtattgtggattgttttgaaattttg	Protospacer
  .     **** **** *****************.

53. spacer 8.9|2866812|35|NC_012034|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026317 (Vibrio campbellii strain BoB-90 plasmid unnamed 1, complete sequence) position: , mismatch: 11, identity: 0.686

acaaaatttacagctatgctcaagaaatgatgagc	CRISPR spacer
gtttgcgttatagctatgctcaagaaaggatgaat	Protospacer
..  .  ***.**************** *****..

54. spacer 9.1|2872692|35|NC_012034|CRISPRCasFinder matches to MN694358 (Marine virus AFVG_250M310, complete genome) position: , mismatch: 11, identity: 0.686

atttctttaccgtcttcagaagtgtaaactacctc	CRISPR spacer
tatactttaccttcttcagaagtgttaacagaaaa	Protospacer
  * ******* ************* *** .    

55. spacer 9.2|2872758|35|NC_012034|CRISPRCasFinder matches to MN694358 (Marine virus AFVG_250M310, complete genome) position: , mismatch: 11, identity: 0.686

atttctttaccgtcttcagaagtgtaaactacctc	CRISPR spacer
tatactttaccttcttcagaagtgttaacagaaaa	Protospacer
  * ******* ************* *** .    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 70961 : 79224 8 Staphylococcus_phage(16.67%) coat NA
DBSCAN-SWA_2 1530781 : 1542927 11 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 2086560 : 2138091 48 uncultured_virus(25.0%) coat,transposase,integrase attL 2095479:2095525|attR 2138274:2138320
DBSCAN-SWA_4 2574181 : 2621302 52 Streptococcus_phage(10.53%) transposase,integrase attL 2570865:2570885|attR 2610158:2610178
DBSCAN-SWA_5 2753762 : 2819517 48 Bacillus_phage(40.0%) protease,transposase,bacteriocin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage