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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012483 Acidobacterium capsulatum ATCC 51196, complete sequence 6 crisprs cas1,cas4,cas7b,cas8c,cas5,cas3,csa3,DinG,RT 0 5 1 0

Results visualization

1. NC_012483
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012483_1 894165-895723 TypeI I-C
23 spacers
cas2,cas1,cas4,cas7b,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012483_2 1055508-1055695 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012483_3 2539434-2539633 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012483_4 2842092-2842179 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012483_5 3452305-3452400 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012483_6 3527663-3527849 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 MT708550 Achromobacter phage Mano, complete genome 15002-15036 8 0.771
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 MT778839 Rhizobium phage P9VFCI, complete genome 143732-143766 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 2138660-2138694 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NC_019849 Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence 197958-197992 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 590513-590547 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NC_017326 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence 197717-197751 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NC_017323 Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence 1433041-1433075 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 561771-561805 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 536256-536290 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP021831 Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence 442916-442950 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 1783404-1783438 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP021823 Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence 1233653-1233687 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP021814 Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence 71745-71779 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP021795 Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence 772026-772060 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP021806 Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence 824013-824047 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 382501-382535 9 0.743
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NC_009620 Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence 725995-726029 9 0.743
NC_012483_1 1.3|894333|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894333-894367 35 NZ_CP009112 Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence 733200-733234 10 0.714
NC_012483_1 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 894400-894434 35 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 1722444-1722478 10 0.714
NC_012483_1 1.20|895458|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 895458-895492 35 NC_047962 Xanthomonas phage Carpasina, complete genome 60312-60346 10 0.714
NC_012483_1 1.20|895458|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 895458-895492 35 MH191395 Xanthomonas virus XcP1, complete genome 60224-60258 10 0.714
NC_012483_1 1.21|895525|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 895525-895559 35 NC_047962 Xanthomonas phage Carpasina, complete genome 60312-60346 10 0.714
NC_012483_1 1.21|895525|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 895525-895559 35 MH191395 Xanthomonas virus XcP1, complete genome 60224-60258 10 0.714
NC_012483_1 1.22|895592|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 895592-895626 35 NC_047962 Xanthomonas phage Carpasina, complete genome 60312-60346 10 0.714
NC_012483_1 1.22|895592|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT 895592-895626 35 MH191395 Xanthomonas virus XcP1, complete genome 60224-60258 10 0.714

1. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to MT708550 (Achromobacter phage Mano, complete genome) position: , mismatch: 8, identity: 0.771

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gccgcggtgtagccgctgccgcggttcgtgatggt	Protospacer
*.  *.**************** *** ***** * 

2. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to MT778839 (Rhizobium phage P9VFCI, complete genome) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
ttgtcagtgtagccggtaccgccgttgacaataag	Protospacer
 ************** *.*********...** ..

3. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcccttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

4. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

5. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcccttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

6. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

7. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

8. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcccttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

9. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

10. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

11. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcccttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

12. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

13. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

14. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

15. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcctttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

16. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcccttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

17. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 9, identity: 0.743

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcggcgcggtagccgccgccgcccttggtgatctg	Protospacer
*.* *.  ********.****** ********* .

18. spacer 1.3|894333|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 10, identity: 0.714

cgtgccactgagatcgagagagccttccacgctca	CRISPR spacer
attcccactgagatcgagcgggccttccatgacgc	Protospacer
  * ************** *.********.* .  

19. spacer 1.4|894400|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 10, identity: 0.714

gtgtcagtgtagccgctgccgccgttggtgatcga	CRISPR spacer
gcagcgcggtagccgccgccgcccttggtgatctg	Protospacer
*.. *.  ********.****** ********* .

20. spacer 1.20|895458|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_047962 (Xanthomonas phage Carpasina, complete genome) position: , mismatch: 10, identity: 0.714

gtgtgttgatcggctggctgccttccccggcggtt	CRISPR spacer
ctgagttggtcggctggctgccttccgatgaatct	Protospacer
 ** ****.*****************   * . .*

21. spacer 1.20|895458|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to MH191395 (Xanthomonas virus XcP1, complete genome) position: , mismatch: 10, identity: 0.714

gtgtgttgatcggctggctgccttccccggcggtt	CRISPR spacer
ctgagttggtcggctggctgccttccgatgaatct	Protospacer
 ** ****.*****************   * . .*

22. spacer 1.21|895525|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_047962 (Xanthomonas phage Carpasina, complete genome) position: , mismatch: 10, identity: 0.714

gtgtgttgatcggctggctgccttccccggcggtt	CRISPR spacer
ctgagttggtcggctggctgccttccgatgaatct	Protospacer
 ** ****.*****************   * . .*

23. spacer 1.21|895525|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to MH191395 (Xanthomonas virus XcP1, complete genome) position: , mismatch: 10, identity: 0.714

gtgtgttgatcggctggctgccttccccggcggtt	CRISPR spacer
ctgagttggtcggctggctgccttccgatgaatct	Protospacer
 ** ****.*****************   * . .*

24. spacer 1.22|895592|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to NC_047962 (Xanthomonas phage Carpasina, complete genome) position: , mismatch: 10, identity: 0.714

gtgtgttgatcggctggctgccttccccggcggtt	CRISPR spacer
ctgagttggtcggctggctgccttccgatgaatct	Protospacer
 ** ****.*****************   * . .*

25. spacer 1.22|895592|35|NC_012483|PILER-CR,CRISPRCasFinder,CRT matches to MH191395 (Xanthomonas virus XcP1, complete genome) position: , mismatch: 10, identity: 0.714

gtgtgttgatcggctggctgccttccccggcggtt	CRISPR spacer
ctgagttggtcggctggctgccttccgatgaatct	Protospacer
 ** ****.*****************   * . .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3000618 : 3073984 60 Acinetobacter_phage(10.0%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage