CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013118	Brucella microti CCM 4915 chromosome 2, complete sequence	0 crisprs	csa3,cas3,DEDDh	0	0	0	0
NC_013119	Brucella microti CCM 4915 chromosome 1, complete sequence	3 crisprs	csa3,WYL,DEDDh	2	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013119_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013119_1

391772-391863

Orphan

Consensus_repeat	Method
AAAAGTGTGCATTTTCGAGCCAAAAGTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013119_1

>merge|NC_013119|1|391772-391863|CRISPRCasFinder
AAAAGTGTGCATTTTCGAGCCAAAAGTGCGTAGCGGTTTTGCGTTGGATAATGCGACCGGCAAAAAGTGAGCATTTTCGAGCCAAAAGTGCG

>NC_013119|1|1|391772-391863|CRISPRCasFinder
AAAAGTGTGCATTTTCGAGCCAAAAGTGCG	TAGCGGTTTTGCGTTGGATAATGCGACCGGCA
AAAAGTGAGCATTTTCGAGCCAAAAGTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013119.1\|WP_004688015.1\|388792_390244_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_013119.1\|WP_004688014.1\|388099_388771_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226996
NC_013119.1\|WP_004683014.1\|396135_396615_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|169691
NC_013119.1\|WP_005973850.1\|384163_385348_+\|YbfB/YjiJ-family-MFS-transporter	unknown	unknown	gnl\|CDD\|284247
NC_013119.1\|WP_004682986.1\|381016_382102_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	unknown	unknown	gnl\|CDD\|185333
NC_013119.1\|WP_002966695.1\|390402_391719_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_013119.1\|WP_002963536.1\|385569_386817_+\|peptide-antibiotic-transporter-SbmA	unknown	unknown	gnl\|CDD\|182960
NC_013119.1\|WP_004682995.1\|386855_387854_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200598
NC_013119.1\|WP_004683016.1\|396737_397400_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NC_013119.1\|WP_002963545.1\|395498_396125_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|169692
NC_013119.1\|WP_002963542.1\|393776_394175_+\|ATP-synthase-subunit	unknown	unknown	gnl\|CDD\|227641
NC_013119.1\|WP_012783876.1\|379411_380818_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143423
NC_013119.1\|WP_005978309.1\|399470_399707_-\|hypothetical-protein	unknown	unknown	unknown
NC_013119.1\|WP_002963544.1\|395099_395327_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|181027
NC_013119.1\|WP_012783878.1\|397576_398749_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NC_013119.1\|WP_004682989.1\|382283_382634_+\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NC_013119.1\|WP_002969473.1\|392216_393506_+\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|226296
NC_013119.1\|WP_004685448.1\|398884_399391_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133013
NC_013119.1\|WP_002963543.1\|394282_395032_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|223433
NC_013119.1\|WP_012783877.1\|382970_384014_+\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614

Protein	Function_ID	Function_description	E-value
NC_013119.1\|WP_004688015.1\|388792_390244_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_013119.1\|WP_004688014.1\|388099_388771_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226996	COG4649, COG4649, Uncharacterized protein conserved in bacteria [Function unknown].	7.09332e-109
NC_013119.1\|WP_004683014.1\|396135_396615_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|169691	PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated.	1.15809e-71
NC_013119.1\|WP_005973850.1\|384163_385348_+\|YbfB/YjiJ-family-MFS-transporter	gnl\|CDD\|284247	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB. This family represents putative bacterial membrane proteins which may be sugar transporters. Members carry twelve transmembrane regions which are characteristic of members of the major facilitator sugar-transporter superfamily.	2.04596e-84
NC_013119.1\|WP_004682986.1\|381016_382102_+\|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	7.97761e-142
NC_013119.1\|WP_002966695.1\|390402_391719_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NC_013119.1\|WP_002963536.1\|385569_386817_+\|peptide-antibiotic-transporter-SbmA	gnl\|CDD\|182960	PRK11098, PRK11098, peptide antibiotic transporter SbmA.	0
NC_013119.1\|WP_004682995.1\|386855_387854_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200598	cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins. The family includes many uncharacterized bacterial hypothetical proteins that show high sequence similarity to insect chitin deacetylase-like proteins. Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues.	9.39605e-170
NC_013119.1\|WP_004683016.1\|396737_397400_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	2.41168e-96
NC_013119.1\|WP_002963545.1\|395498_396125_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|169692	PRK09174, PRK09174, F0F1 ATP synthase subunit B.	9.08099e-99
NC_013119.1\|WP_002963542.1\|393776_394175_+\|ATP-synthase-subunit	gnl\|CDD\|227641	COG5336, COG5336, Uncharacterized protein conserved in bacteria [Function unknown].	4.08711e-46
NC_013119.1\|WP_012783876.1\|379411_380818_-\|aldehyde-dehydrogenase	gnl\|CDD\|143423	cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.	0
NC_013119.1\|WP_002963544.1\|395099_395327_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|181027	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.	9.14649e-27
NC_013119.1\|WP_012783878.1\|397576_398749_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.81892e-26
NC_013119.1\|WP_004682989.1\|382283_382634_+\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	1.52355e-64
NC_013119.1\|WP_002969473.1\|392216_393506_+\|cell-wall-hydrolase	gnl\|CDD\|226296	COG3773, SleB, Cell wall hydrolyses involved in spore germination [Cell envelope biogenesis, outer membrane].	4.95662e-103
NC_013119.1\|WP_004685448.1\|398884_399391_+\|hypothetical-protein	gnl\|CDD\|133013	cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.86291e-05
NC_013119.1\|WP_002963543.1\|394282_395032_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|223433	COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production and conversion].	1.75091e-64
NC_013119.1\|WP_012783877.1\|382970_384014_+\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.16661e-89

>NC_013119.1|WP_002966695.1|390402_391719_+|Hsp70-family-protein
MTPSDQGVEQSGVTLGIDFGTTNTVLSVAAPDGTTAVLSVPKDGVEITGYRSILCFWQDRETGERTAESGPWAVDAFVNAPHSTRMLQSFKTFAASKSFKDTPVFGRRFKFEDILQTFLETVAAKLGDRLPPKGNRVVIGRPVIFAGNAPDEALAMLRYEKAFRAFGFTDIHYVYEPVAAAYFYAQQLTADSNVLVADFGGGTSDFSIVRFEVGKEGLRFTPLSQTGLGIAGDTFDYRIIDNAVSPLLGKGTEYESFGKRLTVPNYYYANFARWNTLFLMNSPATIRELDELARQAVDPKPLESFIHLIENDYGYEIYRAVSELKVRLSSQHIAELHFKADDFEIRSDITRNDFENWIDGDVRQIERSVQQAVEKAGLASSAIDRVFLTGGTSFVPVIRTVFESRFPDAMVTSSNQFDSIANGLALIGQSGDIDRWSV
>NC_013119.1|WP_004688015.1|388792_390244_+|ribosome-biogenesis-GTPase-Der
MGFTLAIVGRPNVGKSTLFNRLVGRKLALVDDLPGVTRDRRIHDAKLYDLKFQVIDTAGLEEAANDSLEARMRAQTEAAISEADAVLFVIDAKAGITPADSTFAEAVRRSGKPVVLVANKAEARGSEAGMYDAFQLGLGEPCPISAEHGQGMPDLRDAIVELLGEERVFAEERQEEAADEVFTPAAVGALVGDDIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLGEDRLLTGPEAGITRDSISADWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAIRFAEVVIIVLDATIPFEKQDLQIADLIIREGRAPVIAFNKWDLIEDRQMVLADLYEKTARLLPQVRGLRAVPISGERGQGIDKLMENVVKTHEIWNRRISTGRLNRWLEGVIAHQPPPAVSGRRLKVKYMTQVKTRPPGFVVSCSRPDAMPQSYVRYLINGLRETFDMPGVPIRLSLRTSDNPFAGRAKKKK
>NC_013119.1|WP_004688014.1|388099_388771_+|tetratricopeptide-repeat-protein
MADDSFIREVNEELRSERAKQVWRNFGPALIGAAVAVVLGTAGWVGYQHWTDSKASASGDKFLAALDLAAAGKTDEALAAFTDLEKTGYGSYPVLARLRAASVLADKGDAAAAVKAFDEISADNSVPEPLRNIARLRAGYLLVDNGSYDDVAKRVEPLSADGNPMRTSAREALGLAAWKAERFDDAAKLFKLVAEDSLAPANARQRANIMLDLMHSAGVAAQG
>NC_013119.1|WP_004682995.1|386855_387854_-|polysaccharide-deacetylase-family-protein
MRFPLSRLVAFCAFAVTSLAGQALAGEPPKTQYVLISFDGAHDNTLWTRSRELARKNNAHFTYFLSCVFLMTKQDRSGYKPPHKKAGASNVGFALSRDEVATRLDNIWQAHLEGNEIASHGCGHFDGTKWSTADWKKEIGEFRRIVADAYRNNGIGGEPEGWRALALTGINGFRAPYLAAGKPVQDVLKATGFRYQASSVTRGPELPQMTDRLASFGLPLVPEGPSQRPVVAMDYNLYVRHSKAVEAPQKAAEFEARAYKAFRAAFDKQYAGKRIPLQLGFHFVLMNDGAYWRALERLVSEVCTKPDVKCTTYGAYLDQLQNTGSNTAHNRS
>NC_013119.1|WP_002963536.1|385569_386817_+|peptide-antibiotic-transporter-SbmA
MFASFFPRPKLFFISALLWTLLAVLGWYMGGENLGSVFGLAPAASDAAPLIGAHVFWSRPFLWFYIYFAVITFAFYGFWVRFSPHPWQRWSILGSALILFATYFNVQVSVAINTWYGPFYDMVQKGLTTPGAVSAAEFYWGLADFAGIAFLAITIGVLNLFFVSHYIFRWRTAMNDYYMSHWPKLRHIEGAAQRVQEDTMRFSTTLEQLGVSLVKSVMTLIAFLPVLFTFSQKVSTLPIIGYVPHALVWAAVIWALFGTGFLALVGIKLPGLEFNNQRVEAAYRKELVYGEDHADRAEPITMRELFKNVRHNYFRLYFHYVYFNVARIFYLQVDNIFPLIILIPSIVAGKLTLGLMSQITNVFDQVRGSFQYLVNSWTTIIELLSIYKRLRAFEAAIHGEPLQAVDRINLEPGAG
>NC_013119.1|WP_005973850.1|384163_385348_+|YbfB/YjiJ-family-MFS-transporter
MNQPFRTPPQHRVALRYAFGGFLAMAAAMGVGRFIYTPILPGMMADIGFSTADAGFIASANYIGYLVGAVVAGYGWSAGIERMVVIAGLAASAVFCFAMALFDGVWILSILRFAAGFASAVTMILCTAIVLSHITRAQRAGLGAMHFGGVGSGITLSALLVALIRFSGLGWRADWIGAGLLTLVIMAVVAAFVKEGPVGGNNGMREPPLPNSFAFHALAFAYGIFGFGYVITATFLIAIVRANDGGPVMEAAVWVVTGLAAAPSIWLWAPVGRKFGLFSAFALTAILEAAGVAASVVMAPPLGALVGGALLGVTFMALTAFGLQAARILAPASPKRALARMTVCFSIGQIIGPLVAGFMAQHSGSFTSASLAAALSLIVAAAIGFSAGRAARLH
>NC_013119.1|WP_012783877.1|382970_384014_+|aromatic-acid-exporter-family-protein
MQQGITNILQHWLASWRDSLMACVAGSLAWLICEELLGQPKPIFAMVTGVACLAPNLPNHGKQAIRVVLGVTAGVIVAELSLFLPQTVSVLHTGMVAFIAMVLATTFGTAPAIPIQAGVSAILVLAMGPQEAGLSRLTDVLVGAGVGLLFSQILLTPDPVRVIDRAVRGLLEPIASGQKKSAAVLKDDNPEEAKTTITQFIEAHRALVALSDGLALVRSDARWSLRGRLVASEITDMASRYERRGIRLYAAALLFGEALGNALRKKETEPPAWLMESLQIVIANCSMEPGREPHRIPPIPKDLPFGWRECVLRLEGVQDTLLHFLNSDQPDSVLVPKCEAKPQVDAV
>NC_013119.1|WP_004682989.1|382283_382634_+|ArsC-family-reductase
MSVTIYGIKNCDTMKKARIWLEDHGIDYAFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVDAASARELMLAQPSMVKRPVLERDGKLMVGFKPAQYEAYFKL
>NC_013119.1|WP_004682986.1|381016_382102_+|bifunctional-DNA-binding-transcriptional-regulator/O6-methylguanine-DNA-methyltransferase-Ada
MNLMIPKTHDPDESRWQKVLDRDKASDGKFVYAVRTTGVYCRPSCPSRRGKRENVQFFNGCEDAERAGFRPCLRCKPDLSDTLATQNNARHAEMVASACRFIETAETQPSLEEIANVVKASPAHFHRVFKAFTGLTPKAYADAHRAGRMRAALDMPQIRVTDAIYDAGYNSSSRFYEASDRILGMTPKAYRAGGKDADIRFAIGQSTLGAVLVAASGKGVCAIFMGDDPQGLIHDLEKRFPKANLIGADRNFENLVAEVVGFVEAPGIGLDLPLDLRGTAFQQRVWRALCEIPAGETVSYTDIAERISAPRAVRAVAQACAANKIAVAVPCHRVVRNDGGISGYRWGVERKRDLLERERKA
>NC_013119.1|WP_012783876.1|379411_380818_-|aldehyde-dehydrogenase
MPAIGFIIDGKESGGASGKTFERKDPITGKVATVAAAASLADVDTVAEAAAKAFESWSETGPNARRAAEFTRLMLEETGATAPWAGFNVHLGANILREAAALTTQITGEIIPSDKPGIMSMAVRQPVGVVLGMAPWNAPVILGVRAVAAALACGNTVILRSSETCPGVHHLIIKILNDAGFPAGVANVISNAPDDAPEIVAALIAHPAIRRINFTGSTQVGRIIARQAAGHLKPVLLELGGKAPFIVLEDADLDQAVDAAAFGAFMNQGQICMSTERFIVHEKVADAFAEKLAAKARSLPAGDPRGNVVLGSLVDLKSAQRMDALIADAVAKGGRVLAGGKRDGAVVEATIIDGVTPQMDIYTQESFGPVKPIIRVKSAEEAIRVANDTEYGLSSAIFSQNVKRALALSRKLETGICHINGPTVADEAQVPFGGVKSSDYGRFGGKAAINEFTELRWITIEGPQHYPF
>NC_013119.1|WP_002969473.1|392216_393506_+|cell-wall-hydrolase
MRLVSLRALFGRSCAAAEPVWHYPVTGYCPEDGRYYGVRAKPRQIPHKQHWLVPFVLAASAYLFNSNAIAFQDMASLVPAADLGTHRWTAFIARAPVGSVHQAEMPFVDATTVTGSIATNGIEVPGIGHVALSGGRKTAKLGVDDPNPDENRINRADKTNRLVSVKPKAPAKAFTAGSMFEKISLISRPPEKIDTRMAFTRKLEGKEIGITMAFHRVKPPKPKAELPTQLAKLINNEQPDVLALGYAPATPDYGKTSPFESILRPDQSEGRFVPPIGDQDHDWAATPLPPSAFSPREQKCLAEAVYYEARGESVKGQVAVAQVVLNRVRNPAYPGSICGVVYQNRDWLNACQFSFACDGQKHRVTEPAQWRMAQQVAKTVSAGQIWLPEVGSATHYHATYVRPFWAPTMKKLTKIGLHIFYRTYGGGWS
>NC_013119.1|WP_002963542.1|393776_394175_+|ATP-synthase-subunit
MARGAEPEKPSGTIKDAKREPGSGELDQRLNRLEAELAKKGVLKQPASEEERSETSSSVAQAMKLSSEFIAGILVGALIGWFLDRYAGTSPWGLIVLLLLGFGAGTLNVLRSAGYVAEQGNNKSSAEKDDRK
>NC_013119.1|WP_002963543.1|394282_395032_+|F0F1-ATP-synthase-subunit-A
MANDPIHQFQVSRWIPIDVGGVDLSFTNVSAFMVATVVLASGFLYLTSSGRGLIPTRLQSVSEMAYEFVATSLRDSAGSKGMKFFPFVFSLFMFVLVANFIGLFPYFYTVTSQIIVTFALSLLVIGTVIFYGFFKHGFGFLKLFVPSGVPGIIVPLVVLIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVVSLSSLGALGIGGAVLPLLMTVAITALEFLVAFLQAYVFTVLTCMYINDAVHPGH
>NC_013119.1|WP_002963544.1|395099_395327_+|F0F1-ATP-synthase-subunit-C
MEAEAAKYIGAGLACFGMAGTALGLGNIFGQYLSGALRNPSAADSQFGRLVFGFAVTEALGIFSLLIALLLLFAV
>NC_013119.1|WP_002963545.1|395498_396125_+|F0F1-ATP-synthase-subunit-B
MFVSTAFAQTATESQPASTAGEHGAADAVHTETGVAHDAGHGSGVFPPFDSTHYASQVLWLAITFGLFYLFLSRVVLPRIGGVIETRRDRIAQDLEQAARLKQDADNAIAAYEQELAQARSKAASIAEAAREKGKGEADAERASAEAVLESKLKEAEERIAAIKAKAMSDVGNIAEETTATIVEQLLGLTADKASVSEAVKAIRASNA
>NC_013119.1|WP_004683014.1|396135_396615_+|F0F1-ATP-synthase-subunit-B
MDATFWAFIALVIFVAIVVYMKVPGMIGRTLDERADRIKKELEEARTLREEAQQLLAEYHRKRKEAEKEAGDIVASAEREAKALLEEAKRATEEYVARRNKLAEQKIATAETDAINAVRASAVDLAVAAAGSILAEKVDAKAAGNLFNDALAQVKSHLN
>NC_013119.1|WP_004683016.1|396737_397400_-|ribonuclease-HII
MKRSASDSPLLFDLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKHRAAIESEGPVPGLHRYTFAPIKGRFDC
>NC_013119.1|WP_012783878.1|397576_398749_-|PA0069-family-radical-SAM-protein
MAVIHQAEIIGQADRLAFGAGRAEHANAVIGEAGLRIDHARRRGRGAGINPSGRFEPTVRQEFDDGWATLEELPAFKTDVQIEKPRTIITRNDSPDISFDRSINPYRGCEHGCIYCFARPTHSYMGLSAGLDFETRLFAKPDAPRLLERELARPGYQPKTIAIGTNTDPYQPVEKKWRIMREILEVLEAANHPVGIVTKSALVVRDIDILSRMAEKGLAKVALSVTTLDAHLARTMEPRASTPSLRLQAIRRLTDAGIPASVMMGPVIPGINDHEIERILDAAYAQGAREAGYVLLRLPLEVAPLFKDWLLRNYPDRYRHVMSLVRSMRDGKDYDAEWGKRMRGTGPYAWQIGRRFEIAARKLGFNTQRLRLRTDLFELIQKGGKQLSLF
>NC_013119.1|WP_004685448.1|398884_399391_+|hypothetical-protein
MLSVIIETLNSERPLACTLSGLVPAVVEGLLRRVTVIDHGSGDGTALVAEGAGCAFHGLAERDVALNGIRTDWVLFLKPGAMPQEGWGEAVRRHMEGGGGPARFSLPEEGRLGNIRKIFGGGPSLDAGLLVRLDLVQPLFLEGIGSDDLPRRLKPLRLKHRILPPERH
>NC_013119.1|WP_005978309.1|399470_399707_-|hypothetical-protein
MKKFALAALAVALSAGAAYAENPYVGQPANMAAQDKAFMQGGSTPVRGNTDYTAPASIKAPVYQDGSAHRFGDASPSN

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Crispr_ID: NC_013119_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013119_2

1342711-1342848

Orphan

Consensus_repeat	Method
ATCGAACTAATCAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013119_2

>merge|NC_013119|2|1342711-1342848|CRISPRCasFinder
ATCGAACTAATCAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATCACCCGTCCGGCAACGCCGGACAAGAAAAAGAAAAGTGGATCGAACTAATTAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC

>NC_013119|2|2|1342711-1342848|CRISPRCasFinder
ATCGAACTAATCAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC	ACCCGTCCGGCAACGCCGGACAAGAAAAAGAAAAGTGG
ATCGAACTAATTAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013119.1\|WP_002964501.1\|1353416_1354316_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_013119.1\|WP_002964487.1\|1339304_1340414_-\|endonuclease	unknown	unknown	gnl\|CDD\|225249
NC_013119.1\|WP_004683990.1\|1335120_1335510_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|223317
NC_013119.1\|WP_004689805.1\|1337522_1338449_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_013119.1\|WP_083766954.1\|1350395_1352219_-\|acetolactate-synthase-3-large-subunit	unknown	unknown	gnl\|CDD\|236380
NC_013119.1\|WP_002969568.1\|1336936_1337371_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225998
NC_013119.1\|WP_002964495.1\|1347060_1347801_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|223923
NC_013119.1\|WP_004688534.1\|1352466_1353399_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_013119.1\|WP_002967792.1\|1349619_1349766_+\|hypothetical-protein	unknown	unknown	unknown
NC_013119.1\|WP_002964498.1\|1349804_1350377_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NC_013119.1\|WP_004686378.1\|1348097_1348499_+\|STAS/SEC14-domain-containing-protein	unknown	unknown	gnl\|CDD\|378774
NC_013119.1\|WP_002967788.1\|1338553_1339285_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NC_013119.1\|WP_015799671.1\|1343883_1344525_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013119.1\|WP_004688528.1\|1335778_1336804_+\|hypothetical-protein	unknown	unknown	unknown
NC_013119.1\|WP_006642931.1\|1342417_1342642_-\|hypothetical-protein	unknown	unknown	unknown
NC_013119.1\|WP_004686380.1\|1341052_1342285_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_013119.1\|WP_002964480.1\|1333556_1334276_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NC_013119.1\|WP_002964497.1\|1348499_1349621_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223581
NC_013119.1\|WP_004683997.1\|1344735_1346691_-\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NC_013119.1\|WP_041594702.1\|1340598_1341006_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573

Protein	Function_ID	Function_description	E-value
NC_013119.1\|WP_002964501.1\|1353416_1354316_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.02441e-87
NC_013119.1\|WP_002964487.1\|1339304_1340414_-\|endonuclease	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	2.09872e-09
NC_013119.1\|WP_004683990.1\|1335120_1335510_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	7.10973e-32
NC_013119.1\|WP_004689805.1\|1337522_1338449_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.29449e-107
NC_013119.1\|WP_083766954.1\|1350395_1352219_-\|acetolactate-synthase-3-large-subunit	gnl\|CDD\|236380	PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated.	0
NC_013119.1\|WP_002969568.1\|1336936_1337371_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|225998	COG3467, COG3467, Predicted flavin-nucleotide-binding protein [General function prediction only].	7.65476e-38
NC_013119.1\|WP_004683997.1\|1344735_1346691_-\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NC_013119.1\|WP_004688534.1\|1352466_1353399_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.23914e-131
NC_013119.1\|WP_002964498.1\|1349804_1350377_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.96537e-87
NC_013119.1\|WP_004686378.1\|1348097_1348499_+\|STAS/SEC14-domain-containing-protein	gnl\|CDD\|378774	pfam11964, SpoIIAA-like, SpoIIAA-like. These proteins adopt an alpha/beta SpoIIAA-like fold, similar to that found in STAT (pfam01740). They adopt open and closed conformations arising from different arrangements of their alpha-2 and alpha-3 helices. They may be membrane associated and may function as carriers of non-polar compounds.	6.21408e-19
NC_013119.1\|WP_002967788.1\|1338553_1339285_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	0.00130247
NC_013119.1\|WP_015799671.1\|1343883_1344525_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.92445e-09
NC_013119.1\|WP_004686380.1\|1341052_1342285_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.36237e-135
NC_013119.1\|WP_002964480.1\|1333556_1334276_+\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	7.27834e-76
NC_013119.1\|WP_002964497.1\|1348499_1349621_-\|AAA-family-ATPase	gnl\|CDD\|223581	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair].	6.0421e-70
NC_013119.1\|WP_002964495.1\|1347060_1347801_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|223923	COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism].	4.34147e-121
NC_013119.1\|WP_041594702.1\|1340598_1341006_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	2.1717e-12

>NC_013119.1|WP_006642931.1|1342417_1342642_-|hypothetical-protein
MFRLQGLMKQEADPMVGFQLNRKEGALLASPFILGVLCWVWSPIYSEQKEPKFYVMFFVSCASGTKTIANIFIP
>NC_013119.1|WP_004686380.1|1341052_1342285_-|PLP-dependent-aminotransferase-family-protein
MLDWENVFATRSKRMRASEIRELLKLLERPDIISFAGGIPDPALFPHDEFQAAYKDILGGPEANAALQYSISEGYKPLRTWLVGELAKIGIPCTEDNVFITSGSQQALDYLGKLFLSPGDTALVTAPTYLGALQAFNAYEPNYDTLALKGNRTPQSYAQTAQKAGGQVKFAYLSADFSNPTGETVDRAGREKLLAHADELDIPVIEDAAYQYLRYNGDAIPPILALDIARNGGDIEKTRTIYCGSFSKTLAPGLRVGYVVASKTVIRKLVLMKQAADLHSSTINQIAIQHVAVHGFDAQVAKLHGVYKHRRDRMLEALAKYMPEGVHWTKPEGGMFVWVTLPEGMDGASLLAASIDSEKVAFVPGKAFFADGTGANTLRLSYSCANDEMIDEGIKRLGRLIRAHTKSAAA
>NC_013119.1|WP_041594702.1|1340598_1341006_+|BA14K-family-protein
MRLATITSLLAISLTGASLAVELRNTPYLPSLKPSTPPILGSNNSLNRPAPGTSRCYGSTICRDSGNYISGNGILIYKNGELLEVHPSTRPPIQGAMPSSNHIQWCSNHYRSYRSSDDTYQPFAGPRQSCNSPFQ
>NC_013119.1|WP_002964487.1|1339304_1340414_-|endonuclease
MFTIATFNVENLMRRFDFSGFRNELHQDRTLQLFEIGDETQYRLLEQARAIAHADDTRQMTALAIAETRADILCLQEVDNLAALNAFEYGYLFKMIGYGYRHKYLIDGNDSRGIDVAVMMRDTTRDGQPIEVDEVTSHAHLTYSDFGIYQPELAELGLEPHDRIFKRDCLNVDLRIGGEPLSLFVAHLKSMSGARNGQDGRTSSHPVRLAEARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNVLLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRGQPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNMV
>NC_013119.1|WP_002967788.1|1338553_1339285_-|NUDIX-hydrolase
MEQVEENRVHVISRADVRVLPGPLPYAEGNRASIAENWARECAANPTLFDGEVYLAPEATLKDGVLQAGFKRTRFATLMHWRRDPSPIRPWHIFSVGVIVSGEGHLIAARMGQQNAVAGKVYFPAGSIDDNDIFDARVDYDANCRREVREETGIDLADARAETQINLVTGNRSIALFRRYYFDVPSCDLVARIEGYLSREAAPELAEIIPVKAAGMMNEATPSYVRAFADWHFGNPGLAGTDR
>NC_013119.1|WP_004689805.1|1337522_1338449_-|PhzF-family-phenazine-biosynthesis-protein
MKKAAVSGRLYEVFDVFADKALAGNPLAIVHDCEGLTDACMQAIAREFNLSETVFIHAPANPAHEASVRIFTPAYELPFAGHPTVGAAVSLARRQKTGDETDRLVTLEEKVGIVRCGVILGENSAFAEFDLPRLPEQVDVKIEREEAAAAIGLGTHEIGFENHVPGVWSAGTPCLLVPVHNLIAAAKVSIDPVYVSESLPHVGGRPLPIYVYCRETILFDSHFHARMFVIGANVYEDPATGSAVAAFAGMIQQNDKPVDGSSQWWIEQGMEMGRPSRIRLELDVSKQKLVSARIGGTAVKIAEGRLFV
>NC_013119.1|WP_002969568.1|1336936_1337371_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MLITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWWEPAYTKTITKEGTARALKPVFFRVDIEKLSGHQAE
>NC_013119.1|WP_004688528.1|1335778_1336804_+|hypothetical-protein
MDTLLHLIAILIGIFGLLVYFRSVIRVMLLNWRERDLISYFAAVAAVVLIRRFTDSGAGYERIQRSQAWVFPVFVILSVAFWFLLVQLCFTLILWGTRAETSFIYSFTASGSALSTLGFKTPSSWLGEFLAIVEGAMGLAIVVLLFSFVPGYLAAVQARERKVGWLYDRTEGHPTYQTVLEGMNTSEQDINDTGIWEDWEAWFRGIYETHTTAPILTFVPSIYHGANWLRTSASILDTASLLMSVLDEKKTYAAHMCRDIGARTIQLLAKELHITAPSLGRAIPHSPDLPANTFDLVYDQLVANGVPVNPDKEKCRETFTQLRAEYAADLNQISRITSMPL
>NC_013119.1|WP_004683990.1|1335120_1335510_-|fluoride-efflux-transporter-CrcB
MTPLDVMWVGLGGGVGSLGRWWIGRIVGEYHHGAFPLGTFLINISGAFVIGYLSVLFGVDWHDRYGTMLNAGVLTGILGGYTTFSSMQLDAVKLSHKGQGGLAVFYLVASVLSGLFAAWLGAMLAHLQG
>NC_013119.1|WP_002964480.1|1333556_1334276_+|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MKPLLSLDRVSVSRDGRNVLDKLSLSLAAGERLALIGDNGVGKTTLLRTIVGLEPASGEITAFGINCRNESDFRKIRAKAAYLFQDPDDQLFCPTVIDDVAFGPLNLGLSRQEAMELSNGLLHDLGLGHLAGRITHHLSGGEKRLVSLAAVLAMQPQVLLLDEPTNALDEKHLERMLAILSAQKIAMIIVSHDWEILERLTDRAVVLRNGKLLPAMLHRHSQWSEQVHLHYVEAEGSAL
>NC_013119.1|WP_015799671.1|1343883_1344525_-|TetR/AcrR-family-transcriptional-regulator
MTDTGDELQAHKQQVLSPRQNDVLEQALRLLVEGGDRALTTASIARAANCSKESLYKWFGDRDGLLTAMVRWQASKVRVVPLAREKLDAESLFSSLEHFARDWLLVLSGRTSIALNRLAVSHAASGRSALGEIVLSNGPVAMAERLKPILTMGKEAGLLIFDDIDEAFRTFFGLVVRDMQIRLLLGDRLKLTDEVVIRDARRATKQFFALYGA
>NC_013119.1|WP_004683997.1|1344735_1346691_-|potassium-transporter-Kup
MSGELNGNDTSAQAAVSAGSVLEGAAFADEGEQHNESMKTLVLGALGVVYGDIGTSPIYAFREALHAAATNGILARSDILGVVSLIFWALTLVVTVKYVLFVLRADNNGEGGILSLMALVRGALKGRPDLILGVGICGAALFFGDAVITPAISVLSAMEGLEIVAPNLTPFVVPATVVILVTLFSVQKLGTGRVAIVFGPIMALWFVALGASGLWHIFDDPTVMAALNPYYAVRFLTVSPAVAFVTVGAVFLAMTGAEALYADLGHFGRKPIVRAWLWIVFPCLLLNYFGQAAFILSHGEAAALPFFQMIPSFALWPMVLLATAATVIASQAVITGAYSVARQAVQLNILPRLEIQHTSEKLHGQIYIPRVNLLLGLAVVILVLGFEKSSNLAAAYGIAVTGNMLVTTVLLYIVMTRIWNWRVSRALPIILGFLVIDMLFFSANIIKVHEGGWASIGIATVLVLIMWTWVRGTRHLFQKTRKAEVPLDLIVEQMAKRPPTIVPGTAVFLTGDPKSAPTALMHSLKHYKVLHENNVILTVVTASKPWVASADRARVSQYNERFMLVTLTFGYMQQPNIPRALGLCRRLGWKFDIMTTSFFLSRRSLKASVHSGMPLWQDKLFILLARTASDATEYFQIPTGRVVEIGTQVNI
>NC_013119.1|WP_002964495.1|1347060_1347801_-|pyridoxine-5'-phosphate-synthase
MPAKLSVNLNAIAMLRNRRDLPWPSVTGLGRAALAAGAAGLTVHPRPDQRHIRFSDLGDIRALIDDEYPQAEFNIEGFPSEAFLDLVEKHEPEQVTLVPDDPMQATSDHGWDFMSKADFLAPIVARLKGRGMRVSLFADPDSLGYERAKAIGADRVELYTGPYGATHDDPAAAARELDRLEKAARAATALGLAVNAGHDLTVDNLPALVKRIPQLAEVSIGHGLTADALMYGIPVTVSRYITALAG
>NC_013119.1|WP_004686378.1|1348097_1348499_+|STAS/SEC14-domain-containing-protein
MMRNESIPVIRRIPTSRDDVFAFAIEGHLDDASLENLYGLLDAAYETHEKIDLLIRLTGYEGVDWVSAFSESMLSIRSKSLKHLRRYAIIGGPLWIQASITLVQPFLSIEVRAFDPDEEQDAWEWLDAKPVEE
>NC_013119.1|WP_002964497.1|1348499_1349621_-|AAA-family-ATPase
MQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLRSKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEHEPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRTRRRYNQRLRELKGFTADYPQAGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFEDPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK
>NC_013119.1|WP_002967792.1|1349619_1349766_+|hypothetical-protein
MILSDRIRRLKTRSNNFAYRNGQSAESDIASADNGADPLGVGAICGKA
>NC_013119.1|WP_002964498.1|1349804_1350377_-|acetolactate-synthase-small-subunit
MNAQNLASGSAYFIAAETQTPETHTLAVLVDNEPGVLARVIGLFSGRGYNIESLTVSETEHERHLSRITIVTRGTPHVLDQIRHQLARIVPVHRVVDLSHRAATLGHERPIERELALVKVAGKGEARAETLRLADAFKAKVVDATTDHFILEITGKSAKIDQFISIMKPLGLVEICRTGVAAMNRGAEGM
>NC_013119.1|WP_083766954.1|1350395_1352219_-|acetolactate-synthase-3-large-subunit
MNAGKHEAEANAGQAQDAGHPREMTGAEMVIQALIGQGVESIFGYPGGAVLPIYDELFQQDQIQHVLVRHEQGAGHAAEGYARSTGKVGVMLVTSGPGATNAVTPLQDALMDSIPLVCISGQVPTTLIGSDAFQECDTIGITRPCTKHNWLVKDVNDLSRVLHEAFHVASTGRPGPVVVDIPKDIQFAKGIYTPPETAPRTSYRPVLDGNAEAISEAVRLLANARKPVIYSGGGVINSGPAASRLLRELVEISNFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMTMHDCDVMLCVGARFDDRITGRLNAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVAHVLEDIVRQFRAFDRKPDRQALTEWWGQIDRWRARNSLAYTPNKDVIMPQYAIERLYELTRNRNTYITTEVGQHQMWAAQFFGFEQPNRWLTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSAAIQHNAPIKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAHGIRCEKPGDLDAAIQEMIDIDKPVIFDCRVANLANCFPMIPSGKAHNEMLLPDEATDEAVANAIDAKGRALV
>NC_013119.1|WP_004688534.1|1352466_1353399_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSEDAVKNAILIAGPTASGKSALAIRMAKATGGFIVNTDSMQVYGVLDLLTARPSRADLAEAEHFLYGHVPPSSTYSTGKWFEDVEALLGRCELQGRVPIFVGGTGLYFRALLGGLSQMPEVSAQVRDHWRGRMEAEGAKALHAVLCVRDPAIAAALQPSDSQRIVRALEVLESTGKSLLEWQKVKGRALVDDQSAQKIVLRPDRAWLGERIARRFSAMWAEGAIDEVRALLALDLDPALPAMKAIGVREVSAFLAETMSREEAIERSVIATRQYAKRQSTWFRNQLGEDWRVYASGEEVFQGGSFRDPQ
>NC_013119.1|WP_002964501.1|1353416_1354316_+|phosphoserine-phosphatase-SerB
MSQQVSLVATLIANPAKAALAPSLGIKASAAVNATGLYWLADDIACDIPLPLGMEASEADASLRATLDGAPIDVVVQEQERRRKKILIADMDSTMIGQECIDELAEEAGLRDHVAAITARAMNGEIAFEPALRERVALLKGLPLSVIDKVISTRITLTPGGPQLVRTMRKHGAYTALVSGGFTSFTRRIAEMIGFNEERANRLIDDGTRLTGTVAEPILGREAKVEKLVEIAERLGLTPEDAIAVGDGANDLGMIQLAGTGVALHAKPAVAAQAKMRIDHGDLTALLYIQGYRKADFVQ

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Crispr_ID: NC_013119_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013119_3

1786018-1786194

Orphan

Consensus_repeat	Method
GTCGATCCGGCCACTATTCTGGCCAATGGCAGTCTTGTTGTCGGCAACGCC	PILER-CR

2 spacers

The CRISPR arrays of NC_013119_3

>merge|NC_013119|3|1786018-1786194|PILER-CR
GTCGATCCGGCCACTATTCTGGCCAATGGCAGTCTTGTTGTCGGCAACACCTTTGGCATTGGTGTCGATCCGACCGCTGTTCTGGCCAATGGCAGTCTTGTTGTCGGCAACGCCCTTGGCATTGGCGTCGATCCGGCCACTATTCTGGCCAATGGCAGTCTTGTTGTCGGCAACGCC

>NC_013119|3|1|1786018-1786194|PILER-CR
GTCGATCCGGCCACTATTCTGGCCAATGGCAGTCTTGTTGTCGGCAACACC	TTTGGCATTGGTGTC
GATCCGACCGCTGTTCTGGCCAATGGCAGTCTTGTTGTCGGCAACGCCCTT	GGCATTGGCGTC
GATCCGGCCACTATTCTGGCCAATGGCAGTCTTGTTGTCGGCAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013119.1\|WP_002972331.1\|1780408_1780780_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NC_013119.1\|WP_006013820.1\|1778848_1779748_-\|hypothetical-protein	unknown	unknown	unknown
NC_013119.1\|WP_004684318.1\|1779865_1780390_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|234634
NC_013119.1\|WP_002964935.1\|1793888_1794575_-\|IS6-like-element-IS2020-family-transposase	unknown	unknown	gnl\|CDD\|225853
NC_013119.1\|WP_015799744.1\|1777386_1778736_-\|murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
NC_013119.1\|WP_004684325.1\|1782909_1784046_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NC_013119.1\|WP_002964927.1\|1788358_1788628_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NC_013119.1\|WP_004688741.1\|1776068_1777397_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NC_013119.1\|WP_004688740.1\|1775314_1775851_-\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NC_013119.1\|WP_002967948.1\|1786976_1787534_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NC_013119.1\|WP_002964930.1\|1792655_1793330_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377070
NC_013119.1\|WP_015799747.1\|1796299_1796974_-\|hypothetical-protein	unknown	unknown	unknown
NC_013119.1\|WP_015799746.1\|1790730_1792659_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|369778
NC_013119.1\|WP_002967949.1\|1788653_1789082_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NC_013119.1\|WP_002964935.1\|1789803_1790490_+\|IS6-like-element-IS2020-family-transposase	unknown	unknown	gnl\|CDD\|225853
NC_013119.1\|WP_002964923.1\|1784073_1785099_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NC_013119.1\|WP_002964931.1\|1793329_1793668_+\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377512
NC_013119.1\|WP_002964920.1\|1780942_1781617_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NC_013119.1\|WP_002970321.1\|1781616_1782900_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_013119.1\|WP_002964926.1\|1787587_1788238_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112

Protein	Function_ID	Function_description	E-value
NC_013119.1\|WP_002972331.1\|1780408_1780780_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.05797e-48
NC_013119.1\|WP_002964926.1\|1787587_1788238_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.03822e-35
NC_013119.1\|WP_004684318.1\|1779865_1780390_-\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	2.34148e-69
NC_013119.1\|WP_002964935.1\|1793888_1794575_-\|IS6-like-element-IS2020-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.8584e-86
NC_013119.1\|WP_015799744.1\|1777386_1778736_-\|murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	1.99555e-139
NC_013119.1\|WP_004684325.1\|1782909_1784046_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NC_013119.1\|WP_002964927.1\|1788358_1788628_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.22436e-55
NC_013119.1\|WP_004688741.1\|1776068_1777397_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	2.98304e-156
NC_013119.1\|WP_004688740.1\|1775314_1775851_-\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	1.91543e-83
NC_013119.1\|WP_002967948.1\|1786976_1787534_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	2.71129e-08
NC_013119.1\|WP_002964930.1\|1792655_1793330_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|377070	pfam03591, AzlC, AzlC protein.	6.64901e-26
NC_013119.1\|WP_015799746.1\|1790730_1792659_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.56271e-14
NC_013119.1\|WP_002967949.1\|1788653_1789082_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	2.83327e-48
NC_013119.1\|WP_002964935.1\|1789803_1790490_+\|IS6-like-element-IS2020-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.8584e-86
NC_013119.1\|WP_002964923.1\|1784073_1785099_-\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NC_013119.1\|WP_002964931.1\|1793329_1793668_+\|AzlD-domain-containing-protein	gnl\|CDD\|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	0.00724537
NC_013119.1\|WP_002964920.1\|1780942_1781617_-\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	4.98816e-76
NC_013119.1\|WP_002970321.1\|1781616_1782900_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0

>NC_013119.1|WP_002964923.1|1784073_1785099_-|GTPase-ObgE
MKFLDQAKIYIRSGNGGAGAVSFRREKFLEFGGPDGGDGGRGGDVWVEAVDGLNTLIDYRYQQHFKAKTGMHGMGRNMTGGKGDDVVLRVPVGTQIFEEDNETLICDITEVGQRYRLAKGGNGGFGNLHFTTSTNRAPRRANPGQEGIERTIWLRLKLIADAGLVGLPNAGKSTFLASVTAAKPKIADYPFTTLHPNLGVARIDGREFVIADIPGLIEGASEGVGLGDRFLGHVERTRVLLHLVSAQEEDVAKAYQVIRGELEAYEHGLADKPEIVALSQVDTLDPETRKAKVKALKKACGCEPLLLSAVSHEGLNDTLRQLARIIDLSRAEEAGTAQAEE
>NC_013119.1|WP_004684325.1|1782909_1784046_-|glutamate-5-kinase
MLKKLKDYRRIVVKIGSALLVDRATGLKREWLESLGQDIAALQHAGVEVLVVSSGAIALGRTVLGLPKKALKLEESQAAAAAGQIALAKAYADVLGGHGIKSGQILVTLSDTEERRRYLNARATIETLLKLKAVPIINENDTVATTEIRYGDNDRLAARVATMMGADLLILLSDIDGLYTAPPHKNPDAQFLPFVETITPQIEAMAGAAASELSRGGMKTKLDAGKIANAAGTAMIITSGTRFGPLSAIDRGERATLFEAAHAPVNAWKTWISGNLEPAGRLTVDAGAVKALKSGKSLLPAGVKEVDGDFERGDTVAVMNEDGREIARGLIAYDAADARKVAGHKSDEISAILGYDARAAMIHRNDLVVRAASDAKAA
>NC_013119.1|WP_002970321.1|1781616_1782900_-|glutamate-5-semialdehyde-dehydrogenase
MLVKADMTKDIAQVMAEVGRKAKAAAAPLSIATSEQKNKALNAAADAILEARADILEANRLDLANAEKNGMAASFVDRLTLNEARIDAIAEGIRAIATLPDPVGEVIAEWDRPNGLHIERVRTPLGVIGVIYESRPNVTADAGALCLKAGNAVILRGGSDSAHSSAAIHKALVKGLEAANLPADAIQIVPVTDRAAVGEMLKGLGGAIDVIVPRGGKSLVARVQSEARVPVFAHLEGICHLYIDKSADLDMARRIALDAKMRRTGICGAAETLLVDRAVASTHLAPILGDLAAGGCEIRGSAEVLALYPAAKPATEEDWSTEYLDAIISVALVDGISGAIDHINRYSSHHTEAIVAEDAQTVARFFNEIDSAILLHNASTQFADGGEFGMGAEIGIATGKMHARGPVGVEQLTSFKYRVRGSGQVRG
>NC_013119.1|WP_002964920.1|1780942_1781617_-|nicotinate-nucleotide-adenylyltransferase
MKFGFGLSALKEQYPGVDAHYLRMPHVEKGMTVGLFGGSFNPPHGGHALVAEIAIRRLKLDQLWWMVTPGNPLKDSRELAPLSERLRLSEEVAEDPRIKVTALEAAFHVRYTADTLALIRNANPDVYFVWVMGADNLASFHRWQRWREIAQNFPIAIIDRPGSTLSYLSSRMAQTFSDSRLDERYAPVLARRMPPAWTFIHGPRSSLSSTALRKVQLKKAPSKK
>NC_013119.1|WP_002972331.1|1780408_1780780_-|ribosome-silencing-factor
MNETNLVSATFDAALASLENSKAESIIPIDIRGRSTIGDYMIVASGRSHRHVTAVADHLVQALREAGCKEMRVEGLESGDWVLIDTGDIIVHIFRPEVRDFYNLEKIWLDDDFGDERAPGLVH
>NC_013119.1|WP_004684318.1|1779865_1780390_-|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MRVSVFAVGRMKSGPERELVERYFDRFAKAGPPLGLEFAGVSEIPESRGQTAQLRKAEEAQRIHEALDNAKSGGAKSGGTSSGGAALILLDERGKTLGSEAFAAIVGRMRDDGKRQLIVAIGGPDGHDPALRSRADLVLALGELTWPHQIARILIAEQLYRAATILAGHPYHRS
>NC_013119.1|WP_006013820.1|1778848_1779748_-|hypothetical-protein
MSRPTIITLSSIPPRFGLLKPTLFSLLSQRLKAEEVRLYIPHKYRRFPDWDGRLPEVPAGITIVRCDEDLGPATKVLPAARDLKGRDVDILFCDDDKIYDANWHQRFKAEAARKPGHCIIEDGETFPDIADAGRPADRLPRSRWKPKDFKYRMKRIASLFLYKPNRGTPGYVDRISGFAGVLVHPDWFDELFYDIPDIMWTVDDPWISGHLERRGIPIWMIGRNSRRAEGKASGVSALLNHVEDGQDRVDADLLVIDYFRQHYGIWQKTEMIDEKATLRTASMREMMRRRKAELGLIDP
>NC_013119.1|WP_015799744.1|1777386_1778736_-|murein-hydrolase-activator-EnvC
MNSIGLFRTLGGFAPLRAGRLLAGFALAGALACAPPAVAQDALKQQRDQMASEYEKLSNELTVTGDTLKQLEDEVASLKKDQSTITAALIQSAKTDKKLQQDIADIADRLVALREQEDGIRASLRARRGVLAEVLAALQRMGLNPPPAILVRPDDALASVRSAVLLGAVVPDMRDQVKELTGDLKDMQHVSASIAQEQEKLKETRTAQAEERERQSLLLEEKKKLQRQSEQEIEAQRKHSEELAAKAGSLKELIASLDKQMASVREAAEAARKAEAERLAAAKEKAGESTPGDRHLRAQSDFSTLQGRLVLPAAGKIMRRFGDKDGVGGSMMGQVVETLPSATITSPSDGVVLYAGVFRSYGQLLILDAGNGYHIVMAGMGRIDVAQGQFVLAGEPVGAMGEKLLASFAPVEVGNGAPLLYIEFRKDGKPVDPAPWWTERLSGRTQNDT
>NC_013119.1|WP_004688741.1|1776068_1777397_-|S41-family-peptidase
MIRKLSLLFAGALLGASAMVMVQGAPASTAFAAGKDSDVYKELALFGDIFERVRAQYVTPPDDKKLIESAINGMLTSLDPHSSYLNPEAAQDMRVQTKGEFGGLGIEVTMDNDLVKVIAPIDDTPASKAGVLSGDLITKIDGQEVRGLSLTDAVDKMRGEVGAPIELTILRKGADKPITLKINRAIIKVKAVRSRVENDVGYLRIISFTEQTSEDLKKAIKDIQEKVPADKLKGYVLDLRLNPGGLLDQAVAVSDAFLDKGEIVSTRGRDPQDVTRFDARKGDLTNGKPLIVLINGGSASASEIVAGALQDHRRATVLGTQSFGKGSVQTIIPLGENGSLRLTTALYYTPSGKSIQGKGITPDIKVDQPLPPELKGEDVVRGESELKGHIKGNAEDASGSGSSAYVPPDPKDDLQLNEALKLLRGEVANAAFPPDPKKGVLN
>NC_013119.1|WP_004688740.1|1775314_1775851_-|RNA-pyrophosphohydrolase
MSKHKGPTGAMVDPESLPYRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHLVGLALKGKYRGQTQKWFAYRFEGDESEIAINPPPGGHTAEFDCWEWKPMADLPNLIVPFKRKVYEQVVATFRHLAA
>NC_013119.1|WP_002967948.1|1786976_1787534_-|GNAT-family-N-acetyltransferase
MNDICTIARDKVVVRALEKADLQRYRAIRLNALQRAPMSFGSTFEEENAYSDTIFARRLEQVDGNAIFGAFHGEELLGIAGHHRHERRTERHRGTLASVYVEPQARGLKLGEALVQKVIDHAARHVVVLDARVVATNEAAKRIYYALGFKTCGVERKALLVQGQYLDQELIYIDFSDPAWKDKLG
>NC_013119.1|WP_002964926.1|1787587_1788238_-|GNAT-family-N-acetyltransferase
MVVEEESYEASCCKREADYADASPGLEKELGYVLDCPILVTERLVLRPPHAEDVDAISYLANNARVSSMLARMPHPYTRENALDFVGRVRKGEMGNCIYAITQAETGIFMGCCGIHPYKHGEGLEIGYWLGEPYWGHGFATEAAHALIDLAFRATGIGRLHVSCRASNGGSRRVIHKCGFQFSGMGMADSLAAGNVPVEHYVLDRRTWIGLRSWQS
>NC_013119.1|WP_002964927.1|1788358_1788628_-|50S-ribosomal-protein-L27
MAHKKAGGSSRNGRDSESKRLGVKKFGGEAVLAGNIIVRQRGTKWHPGANVGLGKDHTIFATVNGSVSFRTKANGRTYVSVNPIAEAAE
>NC_013119.1|WP_002967949.1|1788653_1789082_-|50S-ribosomal-protein-L21
MFAVIKTGGKQYRVAANDLIKVEKVAGEAGDIVEFAEVLMVGSTIGAPTVAGALVTAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEILTDGAKPSKKAAEKKAPKADAAEGEAAKPKKAAPKKAAAKAESAE
>NC_013119.1|WP_002964935.1|1789803_1790490_+|IS6-like-element-IS2020-family-transposase
MAIDFKGAHFPKNVILYAVFFYVRYPVSYRDLQEILAERGIEVDHATLNRCVVRYSPQIATQAQMRKRHTAGSWRVDETYLKVRGKWVYLYRAVDRDGQTLDFMLSERRNVGAARRFFKKAITSSGVPHKIVIDKSGANLAGAQAVNNILKITGADKLIEILQVKYLNNILEQDHRFIKRITKHMLGFKAFHSAAATIAGIEVAHMIRKNQFANDNCSPFKVFAELTA
>NC_013119.1|WP_015799746.1|1790730_1792659_+|helix-turn-helix-domain-containing-protein
MNLACLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVSENVVVLSGAIAVGPLSTPMLLHAGQSHQFAADVPHIYSSGAEPSRAIVTIIYPEDDTALTSEDQELEWPVGKDEWANVRAQLNRARIEVQNGYAHSRITFKSAPEPLQSAIRLIEDELATRSGIAETAKVFVTGNRTPAIATFYRTTQMRPLPINEQLATPLITNCRELANAAITPWLAKKVDADDLHAKSQNSTHIIEAALAAEVLTRLGRPTVPTGISQKQVTPKQSPLMDRMFEDRIDVDVYEAYELVHPAYARQVLAVAETLPVFATKSDQTILDVGTGPGLPLQMLLELRPELHVVAIDPSEIANVHLSRRFADDSRVQAVQASIIDYRPADYLFDAAVSIGASHHLDTKQFLSSIHECLAAEGVLVIADEMLAPFRDRRERNLALVTHHLWYILDTLFDLPASSSEAERAVCDILKQGLPPAMSLALSGRSEAATRQVRETFKAATDIDLGNALVAREAAFNRFHLLELQALVAGLDYEVEQKTYPARFVSLAESSGFSLLQHRRIYATQGDGSYDAGTHLFVMVKR
>NC_013119.1|WP_002964930.1|1792655_1793330_+|AzlC-family-ABC-transporter-permease
MTERWRQFFHGARSAIPIILGYLPVAFAFGTAASGQGLALLDSTAISALMFSGANQAFFLSAVASGLPTIAIVAICAVASLRHILYGFVLRLRLAGGLASRLAFAFGLTDEVFATVLNATEKSKPDGGWIFGLAFFAWISWVAATFFGAWMGNILQAQFLQLSDALHFALPALFLGLVWVSTSARNVIPMVAAAVIAVMFLCLNLPALAIPGAASAALLARRGD
>NC_013119.1|WP_002964931.1|1793329_1793668_+|AzlD-domain-containing-protein
MSTELWIAVIVIGVLTYITRAVPFLMRLAGNTAPAARAWLSALGPCLLSAMATVVFLDGFQTSIQIGKIIPFLVGSVFASVSMSVRPDPGIGTVAGVTGWWLAASIGSVPTF
>NC_013119.1|WP_002964935.1|1793888_1794575_-|IS6-like-element-IS2020-family-transposase
MAIDFKGAHFPKNVILYAVFFYVRYPVSYRDLQEILAERGIEVDHATLNRCVVRYSPQIATQAQMRKRHTAGSWRVDETYLKVRGKWVYLYRAVDRDGQTLDFMLSERRNVGAARRFFKKAITSSGVPHKIVIDKSGANLAGAQAVNNILKITGADKLIEILQVKYLNNILEQDHRFIKRITKHMLGFKAFHSAAATIAGIEVAHMIRKNQFANDNCSPFKVFAELTA
>NC_013119.1|WP_015799747.1|1796299_1796974_-|hypothetical-protein
MTDLIHIHEDDWGMRNLFPLAAFSEVKEDIAKSATAAAKHQDASGFGYTDVYLIEPPSISYADVGLLVSDAEGVLLPILPRVQQFRATSFQGMTSGKQDSYGTYQDDTSCFGLGRHCYLKLDKKGPLVEGIWFGLDTDDVDAIGRLHMAIEAIDALVPSVIADYFLDISGPVGADGVLDSYFEAFQLQHLKAKQAVQEFQAKYRRQENMLDKLRKLVAFLGRFR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013119_3	3.1\|1786069\|15\|NC_013119\|PILER-CR	1786069-1786083	15	NC_013119.1	1785751-1785765	0	1.0
NC_013119_3	3.1\|1786069\|15\|NC_013119\|PILER-CR	1786069-1786083	15	NC_013119.1	1785877-1785891	0	1.0
NC_013119_1	1.1\|391802\|32\|NC_013119\|CRISPRCasFinder	391802-391833	32	NC_013119.1	391741-391772	1	0.969

1. spacer 3.1|1786069|15|NC_013119|PILER-CR matches to position: 1785751-1785765, mismatch: 0, identity: 1.0

acctttggcattggt	CRISPR spacer
acctttggcattggt	Protospacer
***************

2. spacer 3.1|1786069|15|NC_013119|PILER-CR matches to position: 1785877-1785891, mismatch: 0, identity: 1.0

acctttggcattggt	CRISPR spacer
acctttggcattggt	Protospacer
***************

3. spacer 1.1|391802|32|NC_013119|CRISPRCasFinder matches to position: 391741-391772, mismatch: 1, identity: 0.969

tagcggttttgcgttggataatgcgaccggca	CRISPR spacer
tagcggttttgcgttggataatgcaaccggca	Protospacer
************************.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013119_1	1.1\|391802\|32\|NC_013119\|CRISPRCasFinder	391802-391833	32	MW091529	Bacteriophage sp. 103231, partial genome	17775-17806	7	0.781
NC_013119_1	1.1\|391802\|32\|NC_013119\|CRISPRCasFinder	391802-391833	32	NC_011981	Agrobacterium vitis S4 plasmid pAtS4e, complete sequence	300791-300822	7	0.781
NC_013119_1	1.1\|391802\|32\|NC_013119\|CRISPRCasFinder	391802-391833	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	307686-307717	8	0.75
NC_013119_1	1.1\|391802\|32\|NC_013119\|CRISPRCasFinder	391802-391833	32	NZ_CP044292	Escherichia coli strain P43A plasmid pP43A-1, complete sequence	7667-7698	9	0.719

1. spacer 1.1|391802|32|NC_013119|CRISPRCasFinder matches to MW091529 (Bacteriophage sp. 103231, partial genome) position: , mismatch: 7, identity: 0.781

tagcggttttgcgttggataatgcg-----accggca	CRISPR spacer
aagcggttttgcgtcggataatgcgtaaaaac-----	Protospacer
 *************.**********     **

2. spacer 1.1|391802|32|NC_013119|CRISPRCasFinder matches to NC_011981 (Agrobacterium vitis S4 plasmid pAtS4e, complete sequence) position: , mismatch: 7, identity: 0.781

tagcggttttgcgttggataatgcgaccggca	CRISPR spacer
tcgcggttttgcgttcgaaaatgcgtcaaaca	Protospacer
* ************* ** ****** * ..**

3. spacer 1.1|391802|32|NC_013119|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tagcggttttgcgttggataatgc-----gaccggca	CRISPR spacer
aagcggttttgcgtcggataatgcttaaaaac-----	Protospacer
 *************.*********     .**

4. spacer 1.1|391802|32|NC_013119|CRISPRCasFinder matches to NZ_CP044292 (Escherichia coli strain P43A plasmid pP43A-1, complete sequence) position: , mismatch: 9, identity: 0.719

tagcggttttgcgttggataatgcgaccggca	CRISPR spacer
tggcggttttgcgctggataatacgcgccatc	Protospacer
*.***********.********.**  * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

465284 : 530933

Tupanvirus(14.29%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006160718.1\|465284_466697_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_002963624.1\|466838_467465_-	invasion associated locus B family protein	NA	NA	NA	NA
WP_002963625.1\|467865_468753_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_012783888.1\|468890_470549_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	3.2e-09	36.3
WP_004683128.1\|470776_471724_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_004683131.1\|471723_471909_+	hypothetical protein	NA	NA	NA	NA
WP_004683133.1\|471928_472534_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_002963630.1\|472742_473621_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_004688061.1\|473734_474118_+	DUF983 domain-containing protein	NA	NA	NA	NA
WP_004683138.1\|474114_474864_+	SURF1 family protein	NA	NA	NA	NA
WP_002963633.1\|474972_476013_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_004690619.1\|476018_476999_+	homoserine kinase	NA	NA	NA	NA
WP_002963635.1\|476995_477460_+	ribonuclease HI	J9Q745	Salmonella_phage	1.7e-40	53.6
WP_012783889.1\|477489_477975_-	peroxiredoxin	M1I839	Pelagibacter_phage	3.0e-24	46.8
WP_002963637.1\|478154_478955_-	hypothetical protein	NA	NA	NA	NA
WP_004683145.1\|479089_479692_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_004690621.1\|479805_482700_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_012783890.1\|482696_483317_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004688067.1\|483487_484780_-	insulinase family protein	A0A2K9L1M6	Tupanvirus	2.9e-34	28.4
WP_004688068.1\|484833_486225_-	threonine synthase	NA	NA	NA	NA
WP_004690624.1\|486304_486556_-	hypothetical protein	NA	NA	NA	NA
WP_004688070.1\|486706_487285_+	hypothetical protein	NA	NA	NA	NA
WP_004691963.1\|487598_489233_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002963647.1\|489361_489547_+	hypothetical protein	NA	NA	NA	NA
WP_004689516.1\|492549_493683_+	site-specific DNA-methyltransferase	A0A249XUJ2	Enterococcus_phage	4.7e-28	30.4
WP_002963651.1\|493765_494383_-	HAD family phosphatase	NA	NA	NA	NA
WP_004683167.1\|494379_495456_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002971552.1\|495421_495568_-	hypothetical protein	NA	NA	NA	NA
WP_004689517.1\|495729_496257_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_002971551.1\|496494_497148_+	DsbA family protein	NA	NA	NA	NA
WP_012783891.1\|497226_500685_+	chromosome segregation protein SMC	NA	NA	NA	NA
WP_012783892.1\|500707_501601_+	cation transporter	NA	NA	NA	NA
WP_002967466.1\|501710_502052_-	glyoxalase	NA	NA	NA	NA
WP_006072289.1\|502315_504979_+	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	3.1e-91	41.7
WP_004688079.1\|505211_506036_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_004683182.1\|506254_506659_-	hypothetical protein	NA	NA	NA	NA
WP_002963662.1\|507011_507800_+	DUF1499 domain-containing protein	NA	NA	NA	NA
WP_002967469.1\|508908_509508_+	biotin transporter BioY	NA	NA	NA	NA
WP_004688080.1\|509661_510171_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_002966708.1\|510182_510539_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_002963667.1\|510609_511446_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	1.5e-39	45.2
WP_012783893.1\|511982_513851_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	4.2e-18	28.4
WP_012783894.1\|513837_514845_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_167315903.1\|514726_514999_+	hypothetical protein	NA	NA	NA	NA
WP_083766949.1\|516933_517284_+\|transposase	transposase	NA	NA	NA	NA
WP_002963675.1\|518711_519491_-	LPS biosynthesis N-formyltransferase WbkC	E3SNR5	Prochlorococcus_phage	3.3e-09	31.4
WP_004688086.1\|519517_520372_-	hypothetical protein	NA	NA	NA	NA
WP_002963677.1\|520368_521127_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_004683211.1\|521123_521906_-	ABC transporter permease	NA	NA	NA	NA
WP_004688088.1\|521920_523024_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	2.6e-44	31.9
WP_002963680.1\|523031_524120_-	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	3.4e-137	68.4
WP_029097245.1\|525245_526184_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_148211424.1\|526253_527010_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	4.1e-12	38.2
WP_012783897.1\|527381_528500_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_077281774.1\|529257_529410_-	hypothetical protein	NA	NA	NA	NA
WP_005969645.1\|529452_530007_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.9e-12	33.9
WP_148211425.1\|530170_530933_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.3e-21	40.0

DBSCAN-SWA_2

858361 : 870288

uncultured_Mediterranean_phage(90.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002968731.1\|858361_859213_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5
WP_002964011.1\|859205_859931_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002964012.1\|860076_860295_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_041594690.1\|860405_860987_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964014.1\|860983_861808_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_002964015.1\|861884_863168_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
WP_004683703.1\|863316_864084_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
WP_004683704.1\|864080_864749_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.6e-14	38.5
WP_002964018.1\|864893_865079_+	hypothetical protein	NA	NA	NA	NA
WP_002964019.1\|865127_866426_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964020.1\|866474_867341_-	ATP-binding protein	NA	NA	NA	NA
WP_002964021.1\|867500_867842_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_006642797.1\|867960_870288_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5

DBSCAN-SWA_3

943761 : 952113

Brucella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041594692.1\|943761_944481_+	hypothetical protein	A0A076GD06	Sinorhizobium_phage	4.6e-05	46.8
WP_002964091.1\|944477_944708_+	hypothetical protein	NA	NA	NA	NA
WP_002964092.1\|944704_944980_+	hypothetical protein	NA	NA	NA	NA
WP_004683738.1\|945002_945590_+	hypothetical protein	NA	NA	NA	NA
WP_004683739.1\|945824_946535_+	porin family protein	O11861	Bartonella_henselae_phage	5.1e-41	36.8
WP_002964095.1\|946882_947053_-	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	3.1e-05	45.1
WP_002964097.1\|947400_947715_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.9e-06	43.4
WP_004688321.1\|947714_947960_-	hypothetical protein	NA	NA	NA	NA
WP_006137279.1\|949897_950332_+	hypothetical protein	A0A141GEY5	Brucella_phage	4.8e-74	96.5
WP_004689673.1\|950466_952113_+	hypothetical protein	A0A141GEY6	Brucella_phage	1.3e-175	62.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013119

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection