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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_014029 Yersinia pestis Z176003, complete sequence 6 crisprs DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3 3 9 14 1
NC_014017 Yersinia pestis Z176003 plasmid pCD1, complete sequence 0 crisprs NA 0 0 2 0
NC_014022 Yersinia pestis Z176003 plasmid pMT1, complete sequence 0 crisprs NA 0 0 1 0
NC_014027 Yersinia pestis Z176003 plasmid pPCP1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_014029
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014029_1 1716154-1716275 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014029_2 1846213-1846420 Orphan I-F
3 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014029_3 2721665-2722112 TypeI-F I-F
7 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014029_4 2951925-2952194 Orphan I-F
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014029_5 4129760-4130160 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_014029_6 4463641-4463752 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_014029_3 3.7|2722053|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2722053-2722084 32 NC_014029.1 2238742-2238773 0 1.0
NC_014029_4 4.4|2952135|32|NC_014029|CRISPRCasFinder,CRT 2952135-2952166 32 NC_014029.1 2233176-2233207 0 1.0
NC_014029_5 5.1|4129822|51|NC_014029|PILER-CR 4129822-4129872 51 NC_014029.1 4129709-4129759 1 0.98

1. spacer 3.7|2722053|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to position: 2238742-2238773, mismatch: 0, identity: 1.0

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
aaaaagaatttgggattaaagttacccatcag	Protospacer
********************************

2. spacer 4.4|2952135|32|NC_014029|CRISPRCasFinder,CRT matches to position: 2233176-2233207, mismatch: 0, identity: 1.0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

3. spacer 5.1|4129822|51|NC_014029|PILER-CR matches to position: 4129709-4129759, mismatch: 1, identity: 0.98

gtcaacgccactcattccacaaaatcccgcttcggcgggtttttgctttgg	CRISPR spacer
gtcaactccactcattccacaaaatcccgcttcggcgggtttttgctttgg	Protospacer
****** ********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_014029_4 4.4|2952135|32|NC_014029|CRISPRCasFinder,CRT 2952135-2952166 32 MT374852 Yersinia phage vB_YpM_3, complete genome 12-43 0 1.0
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK820641 Gordonia phage EnalisNailo, complete genome 34088-34119 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK878898 Gordonia phage Zameen, complete genome 34513-34544 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK919483 Gordonia phage Suscepit, complete genome 34514-34545 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK284520 Gordonia phage Lilas, complete genome 35799-35830 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK016492 Gordonia phage Bialota, complete genome 35265-35296 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK820642 Gordonia phage Polly, complete genome 33956-33987 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NC_041883 Gordonia phage Attis, complete genome 31646-31677 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK814755 Gordonia phage Antonio, complete genome 34513-34544 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK875796 Gordonia phage Tayonia, complete genome 34513-34544 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK801734 Gordonia phage LordFarquaad, complete genome 31627-31658 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 MK433274 Gordonia phage Bradissa, complete genome 34554-34585 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 KU963257 Gordonia phage Kita, complete genome 34522-34553 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NC_031251 Gordonia phage SoilAssassin, complete genome 31645-31676 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NC_031097 Gordonia phage Zirinka, complete genome 35253-35284 6 0.812
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NZ_CP005086 Sphingobium sp. TKS plasmid pTK2, complete sequence 138555-138586 6 0.812
NC_014029_2 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT 1846301-1846332 32 MH616963 CrAssphage sp. isolate ctbg_1, complete genome 86942-86973 7 0.781
NC_014029_3 3.1|2721693|32|NC_014029|CRISPRCasFinder,CRT 2721693-2721724 32 CP049262 Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence 69636-69667 7 0.781
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 JF974294 Aeromonas phage pIS4-A genomic sequence 21965-21996 7 0.781
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NC_021534 Vibrio phage pYD38-A genomic sequence 3299-3330 7 0.781
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 440819-440850 7 0.781
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 282870-282901 7 0.781
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 KJ433975 Mycobacterium phage 40BC, complete genome 23231-23262 7 0.781
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 KJ433973 Mycobacterium phage 39HC, complete genome 23231-23262 7 0.781
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NC_024145 Mycobacterium phage Hosp, complete genome 21427-21458 7 0.781
NC_014029_2 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT 1846301-1846332 32 NZ_CP010358 Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence 46720-46751 8 0.75
NC_014029_2 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT 1846301-1846332 32 NC_019694 Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence 20911-20942 8 0.75
NC_014029_3 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721993-2722024 32 NZ_CP024873 Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence 14979-15010 8 0.75
NC_014029_3 3.7|2722053|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2722053-2722084 32 NZ_CP047125 Lactobacillus hilgardii strain FLUB plasmid unnamed4 1912-1943 8 0.75
NC_014029_2 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT 1846301-1846332 32 MT774386 CrAssphage cr110_1, complete genome 42858-42889 9 0.719
NC_014029_2 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT 1846301-1846332 32 NZ_CP028934 Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence 25849-25880 9 0.719
NC_014029_3 3.2|2721753|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721753-2721784 32 NZ_CP031943 Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence 4006-4037 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 MF679145 Escherichia coli plasmid pBJ114-96, complete sequence 37586-37617 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_KP453775 Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence 60831-60862 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP021340 Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence 67671-67702 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP021336 Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence 67672-67703 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP040920 Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence 33435-33466 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP024832 Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence 33830-33861 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP024817 Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence 62769-62800 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP029117 Escherichia coli strain AR435 plasmid unnamed4 15616-15647 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP029117 Escherichia coli strain AR435 plasmid unnamed4 112580-112611 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP023961 Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence 16858-16889 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 AP023222 Escherichia coli M505 plasmid pM505-b DNA, complete genome 93734-93765 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 AP023233 Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome 47570-47601 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP019075 Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence 16520-16551 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP015837 Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence 3287-3318 9 0.719
NC_014029_3 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721813-2721844 32 NZ_CP011063 Escherichia coli str. Sanji plasmid pSJ_98, complete sequence 37637-37668 9 0.719
NC_014029_4 4.3|2952074|33|NC_014029|PILER-CR,CRISPRCasFinder,CRT 2952074-2952106 33 NZ_CP040366 Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence 923-955 9 0.727
NC_014029_3 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721873-2721904 32 NZ_JX627581 Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence 30496-30527 10 0.688
NC_014029_3 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721993-2722024 32 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 815356-815387 11 0.656
NC_014029_3 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721993-2722024 32 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 820287-820318 11 0.656
NC_014029_3 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721993-2722024 32 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 2180994-2181025 11 0.656
NC_014029_3 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR 2721993-2722024 32 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 2185925-2185956 11 0.656

1. spacer 4.4|2952135|32|NC_014029|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

agactgatgcaagatggcggtatgcgtacaga	CRISPR spacer
agactgatgcaagatggcggtatgcgtacaga	Protospacer
********************************

2. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

3. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

4. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**  

17. spacer 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
aattataaaagatgctgataaaaagattatta	Protospacer
* **** ***********.******* . * *

18. spacer 3.1|2721693|32|NC_014029|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

19. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

20. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

21. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

22. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

23. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.************* 

24. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.************* 

25. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.************* 

26. spacer 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaatgatgctgacgaaaatatggcac	Protospacer
********* *********.**** *   .* 

27. spacer 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
atttattaaagaagctgccaaaagagcatcaa	Protospacer
************ **** *****...  *.**

28. spacer 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 8, identity: 0.75

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
ttactcaaacaagttgaggcgacgattctaaa	Protospacer
*.. ********.** ***********. * *

29. spacer 3.7|2722053|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047125 (Lactobacillus hilgardii strain FLUB plasmid unnamed4) position: , mismatch: 8, identity: 0.75

aaaaagaatttgggattaaagttacccatcag	CRISPR spacer
taaaagcttttgggattaaagttattcaaaat	Protospacer
 *****  ****************..**  * 

30. spacer 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
tgctattgaagatgctgataaaaagaaacttg	Protospacer
  .****.**********.******** .* .

31. spacer 2.2|1846301|32|NC_014029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

atttattaaagatgctgacaaaaagaacttaa	CRISPR spacer
gcacattacagacgctgacaaaaagaaagtta	Protospacer
.. .**** ***.**************  * *

32. spacer 3.2|2721753|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaggtaagatgggcaagcttctagtagtt	CRISPR spacer
ttatgagaaagatgggcaagcttttagtggta	Protospacer
  * ..* ***************.****.** 

33. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

34. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

35. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

36. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

37. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

38. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

39. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

40. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

41. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *     

42. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

43. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

44. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

45. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

46. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

47. spacer 3.3|2721813|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

48. spacer 4.3|2952074|33|NC_014029|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040366 (Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

ccgaaatcatcagatgtaattaagatttttgct	CRISPR spacer
aatggattatcagatgtaattaagtttttttcc	Protospacer
   ..**.**************** ***** *.

49. spacer 3.4|2721873|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.****** 

50. spacer 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

51. spacer 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

52. spacer 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

53. spacer 3.6|2721993|32|NC_014029|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tcggtcaaacaaatttaggcgacgatttaaca	CRISPR spacer
gtggtcaaacaaatttaggcaaggagccgctg	Protospacer
 .******************.* ** ... ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 393692 : 465073 58 Vibrio_phage(14.29%) tRNA,plate,protease,transposase,integrase attL 401416:401430|attR 470830:470844
DBSCAN-SWA_2 558228 : 604700 40 Bodo_saltans_virus(20.0%) tRNA,plate,transposase NA
DBSCAN-SWA_3 625523 : 682145 53 Escherichia_phage(50.0%) holin,transposase NA
DBSCAN-SWA_4 1281544 : 1336687 56 Escherichia_phage(33.33%) protease,integrase,transposase attL 1281476:1281535|attR 1327257:1329213
DBSCAN-SWA_5 1359407 : 1395629 30 Catovirus(12.5%) holin,tRNA,transposase NA
DBSCAN-SWA_6 1436217 : 1481576 39 Pseudomonas_phage(25.0%) tail,plate,transposase,protease,coat NA
DBSCAN-SWA_7 1655123 : 1729361 60 Streptococcus_phage(20.0%) plate,tRNA,protease,transposase NA
DBSCAN-SWA_8 1759220 : 1803738 36 Tupanvirus(14.29%) lysis,tRNA,plate,transposase NA
DBSCAN-SWA_9 2161438 : 2261095 104 Escherichia_phage(15.09%) lysis,holin,tail,tRNA,transposase,integrase attL 2208790:2208820|attR 2250514:2250544
DBSCAN-SWA_10 2532347 : 2571432 31 Escherichia_phage(14.29%) protease,coat,transposase NA
DBSCAN-SWA_11 2643328 : 2699140 53 uncultured_virus(30.0%) tRNA,transposase NA
DBSCAN-SWA_12 3280127 : 3349877 59 Escherichia_phage(25.0%) tRNA,plate,transposase NA
DBSCAN-SWA_13 3887061 : 3958033 60 Bacillus_virus(18.75%) plate,tRNA,integrase,transposase attL 3878379:3878395|attR 3906491:3906507
DBSCAN-SWA_14 4048926 : 4111361 56 uncultured_Mediterranean_phage(18.18%) holin,transposase,protease NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_014029.1|WP_002214494.1|2204125_2204482_-|hypothetical-protein 2204125_2204482_- 118 aa aa NA HTH_GNTR NA 2161438-2261095 yes
2. NC_014017
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6365 8 Yersinia_phage(100.0%) NA NA
DBSCAN-SWA_2 10651 : 66067 59 Enterobacteria_phage(40.0%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_014022
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 86 : 64182 65 Salmonella_phage(91.94%) tail,terminase,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage