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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012590 Corynebacterium aurimucosum ATCC 700975, complete sequence 1 crisprs cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL,PrimPol,csa3,Cas9_archaeal,DinG 10 17 5 1
NC_010813 Corynebacterium aurimucosum ATCC 700975 plasmid pET44827, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NC_012590
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012590_1 992985-998928 TypeI-E I-E
97 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_012590_1 1.29|994721|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994721-994753 33 NC_012590.1 2134966-2134998 0 1.0
NC_012590_1 1.34|995026|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 995026-995058 33 NC_012590.1 2148633-2148665 0 1.0
NC_012590_1 1.84|998076|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998076-998108 33 NC_012590.1 2136111-2136143 0 1.0
NC_012590_1 1.31|994843|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994843-994875 33 NC_012590.1 2134537-2134569 1 0.97
NC_012590_1 1.33|994965|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994965-994997 33 NC_012590.1 2167639-2167671 1 0.97
NC_012590_1 1.79|997771|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 997771-997803 33 NC_012590.1 2162710-2162742 1 0.97
NC_012590_1 1.38|995270|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 995270-995302 33 NC_012590.1 2113235-2113267 2 0.939
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 NC_012590.1 2114669-2114701 2 0.939
NC_012590_1 1.70|997222|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 997222-997254 33 NC_012590.1 2162576-2162608 2 0.939
NC_012590_1 1.71|997283|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 997283-997315 33 NC_012590.1 2106863-2106895 2 0.939

1. spacer 1.29|994721|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2134966-2134998, mismatch: 0, identity: 1.0

gtgatgaattcatatcctttctggcctgagtgc	CRISPR spacer
gtgatgaattcatatcctttctggcctgagtgc	Protospacer
*********************************

2. spacer 1.34|995026|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2148633-2148665, mismatch: 0, identity: 1.0

ccactaatgcctaactttgcaatgcccaacgtc	CRISPR spacer
ccactaatgcctaactttgcaatgcccaacgtc	Protospacer
*********************************

3. spacer 1.84|998076|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2136111-2136143, mismatch: 0, identity: 1.0

ccattggggaggaatcatgaacgattttgagcg	CRISPR spacer
ccattggggaggaatcatgaacgattttgagcg	Protospacer
*********************************

4. spacer 1.31|994843|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2134537-2134569, mismatch: 1, identity: 0.97

caccaggcagaagtagaccgcctttgggcttca	CRISPR spacer
caccaagcagaagtagaccgcctttgggcttca	Protospacer
*****.***************************

5. spacer 1.33|994965|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2167639-2167671, mismatch: 1, identity: 0.97

ggagcaggccaagaaggaatacgactccctatc	CRISPR spacer
ggagcaggcaaagaaggaatacgactccctatc	Protospacer
********* ***********************

6. spacer 1.79|997771|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2162710-2162742, mismatch: 1, identity: 0.97

cctggcagagcataatgacctaccccgccccga	CRISPR spacer
cctggcagagcataatgacttaccccgccccga	Protospacer
*******************.*************

7. spacer 1.38|995270|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2113235-2113267, mismatch: 2, identity: 0.939

ccctagtcgaaatggtggcccgcaccatggaca	CRISPR spacer
ccctagtggagatggtggcccgcaccatggaca	Protospacer
******* **.**********************

8. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2114669-2114701, mismatch: 2, identity: 0.939

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
cacgtctaatccgtttattgatttcactgacaa	Protospacer
******.**.***********************

9. spacer 1.70|997222|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2162576-2162608, mismatch: 2, identity: 0.939

cggcccaagcttcgtcatcatgtactggcggag	CRISPR spacer
cggccccaacttcgtcatcatgtactggcggag	Protospacer
****** *.************************

10. spacer 1.71|997283|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to position: 2106863-2106895, mismatch: 2, identity: 0.939

cggggtgggactgtccggcgacgtttcactagc	CRISPR spacer
cggggtcggactgcccggcgacgtttcactagc	Protospacer
****** ******.*******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 527009-527040 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY613597 Corynebacterium phage LGCM-V2, complete genome 36619-36650 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY624612 Corynebacterium phage LGCM-V6, complete genome 36619-36650 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY566218 Corynebacterium phage LGCM-VI, complete genome 36619-36650 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY624613 Corynebacterium phage LGCM-V5, complete genome 36619-36650 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY624615 Corynebacterium phage LGCM-V8, complete genome 36619-36650 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY624611 Corynebacterium phage LGCM-V4, complete genome 36622-36653 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 K01723 Corynebacteriophage beta (C.diphtheriae) tox228 gene, complete cds 2058-2089 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY624616 Corynebacterium phage LGCM-V9, complete genome 36619-36650 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY624610 Corynebacterium phage LGCM-V3, complete genome 36619-36650 6 0.812
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 KY624614 Corynebacterium phage LGCM-V7, complete genome 36619-36650 6 0.812
NC_012590_1 1.17|993989|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 993989-994021 33 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 537640-537672 7 0.788
NC_012590_1 1.17|993989|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 993989-994021 33 MT188704 Mesorhizobium phage Cp1R7A-A1, complete genome 41004-41036 7 0.788
NC_012590_1 1.24|994416|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994416-994448 33 NZ_CP040765 Paracoccus sp. 2251 plasmid unnamed1, complete sequence 141674-141706 7 0.788
NC_012590_1 1.40|995392|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 995392-995424 33 NC_017957 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence 429505-429537 7 0.788
NC_012590_1 1.53|996185|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996185-996217 33 MT457475 Arthronema virus TR020, complete genome 43615-43647 7 0.788
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 MH940212 Salmonella phage PS5, complete genome 54061-54093 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 KC139524 Salmonella phage FSL SP-063 baseplate hub subunit and tail lysozyme, baseplate wedge subunit, hypothetical proteins, ribonucleotide reductase B subunit, hypothetical protein, ribonucleoside-diphosphate reductase subunit alpha, phosphate starvation-inducible protein, hypothetical proteins, DNA primase, hypothetical proteins, recombination endonuclease subunit, endonuclease subunit, RNA polymerase sigma factor, ribonuclease H, hypothetical protein, ATP-dependent helicase, DNA-binding HU protein, hypothetical proteins, putative membrane protein, hypothetical proteins, acyl carrier protein, hypothetical proteins, translation repressor protein, clamp loader subunit, clamp loader small subunit, sliding clamp, hypothetical protein, helicase, exonuclease, hypothetical protein, tail completion protein, hypothetical proteins, major capsid protein, prohead core protein, prohead core scaffolding protein and protease, hypothetical proteins, portal vertex protein, tail tube protein, GIY-YIG endonuclease, hypothetical protein, tail sheath protein, large terminase protein, hypothetical protein, tail sheath stabilizer and completion protein, neck protein, hypothetical protein, neck protein, hypothetical proteins, tail spike protein, and hypothetical protein genes, complete cds 34860-34892 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 FQ312032 Salmonella phage Vi01 complete sequence 82945-82977 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 NC_015296 Salmonella phage Vi01, complete genome 82945-82977 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 NC_042061 Salmonella phage STML-13-1, partial genome 55967-55999 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 JN673056 Escherichia phage PhaxI, complete genome 80732-80764 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 MH688040 Salmonella phage Mooltan, complete genome 77451-77483 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 NC_025446 Escherichia phage ECML-4, complete genome 133277-133309 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 MN342150 Escherichia phage vB_EcoM_3HA11, complete genome 45669-45701 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 MT074477 Salmonella phage barely, complete genome 56443-56475 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 NC_023856 Salmonella phage vB_SalM_SJ2, complete genome 1870-1902 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 MH427377 Escherichia phage vB_EcoM Sa157lw, complete genome 45915-45947 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 MG428992 Salmonella phage Mutine, complete genome 81054-81086 8 0.758
NC_012590_1 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996063-996095 33 MN066127 Salmonella phage Matapan, complete genome 77439-77471 8 0.758
NC_012590_1 1.65|996917|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996917-996949 33 NZ_CP042915 Rhodococcus qingshengii strain RL1 plasmid unnamed2 395665-395697 8 0.758
NC_012590_1 1.68|997100|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 997100-997132 33 NZ_CP017759 Cupriavidus necator strain NH9 plasmid pENH92, complete sequence 14216-14248 8 0.758
NC_012590_1 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998625-998656 32 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 95619-95650 8 0.75
NC_012590_1 1.12|993684|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 993684-993716 33 MT553347 Mycobacterium phage Awesomesauce, complete genome 465-497 9 0.727
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP009155 Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence 123458-123490 9 0.727
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP015038 Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence 168742-168774 9 0.727
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 167617-167649 9 0.727
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP042332 Bosea sp. F3-2 plasmid pB32-1, complete sequence 207839-207871 9 0.727
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP015032 Burkholderia cenocepacia strain 842 plasmid pBcn842-1, complete sequence 26444-26476 9 0.727
NC_012590_1 1.50|996002|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996002-996034 33 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 162099-162131 9 0.727
NC_012590_1 1.54|996246|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996246-996278 33 NZ_CP016452 Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence 1780331-1780363 9 0.727
NC_012590_1 1.59|996551|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 996551-996583 33 NZ_CP022991 Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence 530175-530207 9 0.727
NC_012590_1 1.88|998320|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998320-998352 33 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 378898-378930 9 0.727
NC_012590_1 1.88|998320|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998320-998352 33 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 210219-210251 9 0.727
NC_012590_1 1.88|998320|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998320-998352 33 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1792297-1792329 9 0.727
NC_012590_1 1.89|998381|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 998381-998413 33 NZ_CP040761 Paracoccus sp. 2251 plasmid unnamed5, complete sequence 190285-190317 9 0.727
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP021806 Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence 1572018-1572050 10 0.697
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NC_017326 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence 1081632-1081664 10 0.697
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NC_018701 Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence 1100042-1100074 10 0.697
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 1458222-1458254 10 0.697
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP021810 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence 223938-223970 10 0.697
NC_012590_1 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT 994599-994631 33 NZ_CP021218 Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence 1269028-1269060 10 0.697
NC_012590_1 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994904-994936 33 NC_008383 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence 143917-143949 10 0.697
NC_012590_1 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994904-994936 33 NZ_CP050090 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence 210863-210895 10 0.697
NC_012590_1 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994904-994936 33 NZ_CP018231 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3 21519-21551 10 0.697
NC_012590_1 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994904-994936 33 NZ_CP016292 Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence 92948-92980 10 0.697
NC_012590_1 1.20|994172|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR 994172-994204 33 NC_022995 Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence 487770-487802 11 0.667

1. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagatgctct	Protospacer
*********************  *** * *  

2. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY613597 (Corynebacterium phage LGCM-V2, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

3. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY624612 (Corynebacterium phage LGCM-V6, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

4. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY566218 (Corynebacterium phage LGCM-VI, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

5. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY624613 (Corynebacterium phage LGCM-V5, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

6. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY624615 (Corynebacterium phage LGCM-V8, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

7. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY624611 (Corynebacterium phage LGCM-V4, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

8. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to K01723 (Corynebacteriophage beta (C.diphtheriae) tox228 gene, complete cds) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagattcgaa	Protospacer
*********************  ***    **

9. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY624616 (Corynebacterium phage LGCM-V9, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

10. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY624610 (Corynebacterium phage LGCM-V3, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

11. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KY624614 (Corynebacterium phage LGCM-V7, complete genome) position: , mismatch: 6, identity: 0.812

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ccccaaccttctgatccgtagtcagataagaa	Protospacer
*********************  *** .. **

12. spacer 1.17|993989|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 7, identity: 0.788

gtcagcgtcctggtcgatggtgaagccttcgtc	CRISPR spacer
ctgacccacctggtcgaaggtgaagacttcgtc	Protospacer
 * * *  ********* ******* *******

13. spacer 1.17|993989|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MT188704 (Mesorhizobium phage Cp1R7A-A1, complete genome) position: , mismatch: 7, identity: 0.788

gtcagcgtcctggtcgatggtgaagccttcgtc	CRISPR spacer
gcccgcgtcgaggtcgatggtgaagcctatctc	Protospacer
*.* *****  ***************** . **

14. spacer 1.24|994416|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

cgactccgataccgcgtggcacgccgcaaacca	CRISPR spacer
cggcgacgataccgcgtggcgcgccgccaatga	Protospacer
**.*  **************.****** **. *

15. spacer 1.40|995392|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 7, identity: 0.788

cgaaggcgcatggctggcggccaagggcttcaa	CRISPR spacer
cgtcgccgcctggctggcggacaagggcttcgc	Protospacer
**  * *** ********** **********. 

16. spacer 1.53|996185|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MT457475 (Arthronema virus TR020, complete genome) position: , mismatch: 7, identity: 0.788

cacgaaaaggatgacatgaacacccca--aaccag	CRISPR spacer
aacgaaaaggacgacatgaacaacccactgact--	Protospacer
 **********.********** ****  .**.  

17. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MH940212 (Salmonella phage PS5, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

18. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to KC139524 (Salmonella phage FSL SP-063 baseplate hub subunit and tail lysozyme, baseplate wedge subunit, hypothetical proteins, ribonucleotide reductase B subunit, hypothetical protein, ribonucleoside-diphosphate reductase subunit alpha, phosphate starvation-inducible protein, hypothetical proteins, DNA primase, hypothetical proteins, recombination endonuclease subunit, endonuclease subunit, RNA polymerase sigma factor, ribonuclease H, hypothetical protein, ATP-dependent helicase, DNA-binding HU protein, hypothetical proteins, putative membrane protein, hypothetical proteins, acyl carrier protein, hypothetical proteins, translation repressor protein, clamp loader subunit, clamp loader small subunit, sliding clamp, hypothetical protein, helicase, exonuclease, hypothetical protein, tail completion protein, hypothetical proteins, major capsid protein, prohead core protein, prohead core scaffolding protein and protease, hypothetical proteins, portal vertex protein, tail tube protein, GIY-YIG endonuclease, hypothetical protein, tail sheath protein, large terminase protein, hypothetical protein, tail sheath stabilizer and completion protein, neck protein, hypothetical protein, neck protein, hypothetical proteins, tail spike protein, and hypothetical protein genes, complete cds) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

19. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to FQ312032 (Salmonella phage Vi01 complete sequence) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

20. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_015296 (Salmonella phage Vi01, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

21. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_042061 (Salmonella phage STML-13-1, partial genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

22. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to JN673056 (Escherichia phage PhaxI, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

23. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MH688040 (Salmonella phage Mooltan, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

24. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_025446 (Escherichia phage ECML-4, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

25. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MN342150 (Escherichia phage vB_EcoM_3HA11, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

26. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MT074477 (Salmonella phage barely, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

27. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_023856 (Salmonella phage vB_SalM_SJ2, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

28. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MH427377 (Escherichia phage vB_EcoM Sa157lw, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

29. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MG428992 (Salmonella phage Mutine, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

30. spacer 1.51|996063|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MN066127 (Salmonella phage Matapan, complete genome) position: , mismatch: 8, identity: 0.758

cacgtccaacccgtttattgatttcactgacaa	CRISPR spacer
agcggtcaatcagtttattgatttcactgagat	Protospacer
 .** .***.* ****************** * 

31. spacer 1.65|996917|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042915 (Rhodococcus qingshengii strain RL1 plasmid unnamed2) position: , mismatch: 8, identity: 0.758

gtctccaccccggaactggacgaggtacggggc	CRISPR spacer
gaacctgtcccggtactggacgaggtgcggggc	Protospacer
*  .*...***** ************.******

32. spacer 1.68|997100|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.758

gcgaaagcccttgcctagtccgaggtcgtcagt	CRISPR spacer
ctgaaagcccttgcctagtgcgacgtcataggg	Protospacer
 .***************** *** ***.* .* 

33. spacer 1.93|998625|32|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ccccaaccttctgatccgtagagagaaggtaa	CRISPR spacer
ctgcaaccttctgatccgtagtcagatgctct	Protospacer
*. ******************  *** * *  

34. spacer 1.12|993684|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to MT553347 (Mycobacterium phage Awesomesauce, complete genome) position: , mismatch: 9, identity: 0.727

ctctgctgatgcgatggccgctcttgatgaggc	CRISPR spacer
gttgaatgatgcgatggccgctggtgatgagct	Protospacer
 *. . ****************  ******* .

35. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP009155 (Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
cggtgggagctcgccgacatgcgcaaggcgatc	Protospacer
*  *  **********.*********.***.  

36. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 9, identity: 0.727

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
cgttgggagctcgccgacatgcgcaaggcgatt	Protospacer
* .*  **********.*********.***.  

37. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 9, identity: 0.727

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
atcaaactgctcgccggcctgcacaaagcggac	Protospacer
 **     ********** ***.********* 

38. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 9, identity: 0.727

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
ctctccgacctcgccggcaagcgcgtcggcgtc	Protospacer
******** ********** ****.  *  *  

39. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP015032 (Burkholderia cenocepacia strain 842 plasmid pBcn842-1, complete sequence) position: , mismatch: 9, identity: 0.727

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
cgttgggagctcgccgacatgcgcaaggcgatc	Protospacer
* .*  **********.*********.***.  

40. spacer 1.50|996002|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.727

ccccaccacggcgggataggcgcggcctcacct	CRISPR spacer
gcccgccacggcgggagaggcgcggctgttcgg	Protospacer
 ***.*********** *********. . *  

41. spacer 1.54|996246|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.727

cgtcgccggatagtccgaccccgtttggtgaga	CRISPR spacer
cgtctccggacagtccgaccccgtcgacatata	Protospacer
**** *****.*************. .   * *

42. spacer 1.59|996551|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 9, identity: 0.727

ccacgatgcgctcggatggttcaagggcatcca	CRISPR spacer
gtaaggagcgcgcggatgattcaagggcatcgc	Protospacer
 .* *. **** ******.************  

43. spacer 1.88|998320|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.727

cttcactcggccgatgtcggcggggaccgtgac	CRISPR spacer
gttcgctcggccgatgccggcggggtgtgggtg	Protospacer
 ***.***********.********  .* *  

44. spacer 1.88|998320|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 9, identity: 0.727

cttcactcggccgatgtcggcggggaccgtgac	CRISPR spacer
gttcgctcggccgatgccggcggggtgtgggtg	Protospacer
 ***.***********.********  .* *  

45. spacer 1.88|998320|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 9, identity: 0.727

cttcactcggccgatgtcggcggggaccgtgac	CRISPR spacer
gttcgctcggccgatgccggcggggtgtgggtg	Protospacer
 ***.***********.********  .* *  

46. spacer 1.89|998381|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040761 (Paracoccus sp. 2251 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.727

ccaggtccgtcgggaggaacttctcgggcttca	CRISPR spacer
gcgattccgtctggatgaacttctcgggctcgg	Protospacer
 *.. ****** *** **************. .

47. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
acgcgccggctggccgacatgcgcaaagcggaa	Protospacer
 . . * .*** ****.***************.

48. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 10, identity: 0.697

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
acgcgccggctggccgacatgcgcaaagcggaa	Protospacer
 . . * .*** ****.***************.

49. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 10, identity: 0.697

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
acgcgccggctggccgacatgcgcaaagcggaa	Protospacer
 . . * .*** ****.***************.

50. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
acgcgccggctggccgacatgcgcaaagcggaa	Protospacer
 . . * .*** ****.***************.

51. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
acgcgccggctggccgacatgcgcaaagcggaa	Protospacer
 . . * .*** ****.***************.

52. spacer 1.27|994599|33|NC_012590|CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.697

ctctccgagctcgccggcatgcgcaaagcggag	CRISPR spacer
acgcgccggctggccgacatgcgcaaagcggaa	Protospacer
 . . * .*** ****.***************.

53. spacer 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_008383 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence) position: , mismatch: 10, identity: 0.697

cctggcgctcggtgtcgccggtgacgttaaacg	CRISPR spacer
gctgacgctcggtgtcggcggtgaccactacga	Protospacer
 ***.************ *******  . *  .

54. spacer 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050090 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence) position: , mismatch: 10, identity: 0.697

cctggcgctcggtgtcgccggtgacgttaaacg	CRISPR spacer
gctgacgctcggtgtcggcggtgaccactacga	Protospacer
 ***.************ *******  . *  .

55. spacer 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018231 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3) position: , mismatch: 10, identity: 0.697

cctggcgctcggtgtcgccggtgacgttaaacg	CRISPR spacer
gctgacgctcggtgtcggcggtgaccactacga	Protospacer
 ***.************ *******  . *  .

56. spacer 1.32|994904|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016292 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

cctggcgctcggtgtcgccggtgacgttaaacg	CRISPR spacer
gctgacgctcggtgtcggcggtgaccactacga	Protospacer
 ***.************ *******  . *  .

57. spacer 1.20|994172|33|NC_012590|CRISPRCasFinder,CRT,PILER-CR matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 11, identity: 0.667

cctacagccgcacaatccgcgcagccctcaaaa	CRISPR spacer
cctacagcagcacagtccgcgcagtgtgggccg	Protospacer
******** *****.*********. .  .  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 25513 : 61131 26 Shigella_phage(57.14%) protease,transposase NA
DBSCAN-SWA_2 2078371 : 2132879 52 Gordonia_phage(14.29%) capsid,terminase,protease,tRNA,portal NA
DBSCAN-SWA_3 2137206 : 2144236 13 Rhodococcus_phage(25.0%) NA NA
DBSCAN-SWA_4 2178627 : 2190872 16 Rhodococcus_phage(44.44%) terminase NA
DBSCAN-SWA_5 2289147 : 2326953 35 Bacillus_virus(18.18%) protease,transposase NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_012590.1|WP_010191058.1|2122485_2122959_-|hypothetical-protein 2122485_2122959_- 157 aa aa NA NA NA 2078371-2132879 yes