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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012997 Teredinibacter turnerae T7901, complete sequence 6 crisprs WYL,RT,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7 0 6 2 0

Results visualization

1. NC_012997
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012997_1 496780-496875 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012997_2 3463277-3465294 TypeI I-C
30 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012997_3 3572208-3572354 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012997_4 4555712-4555825 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012997_5 4571246-4571350 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012997_6 4834731-4836553 TypeIII NA
25 spacers
cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 JX163858 Caulobacter phage phiCbK, complete genome 59307-59340 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 KY555147 Caulobacter phage Ccr34, complete genome 148960-148993 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 KY555145 Caulobacter phage Ccr29, complete genome 157579-157612 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 KY555143 Caulobacter phage Ccr2, complete genome 151913-151946 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 NC_019410 Caulobacter phage CcrKarma, complete genome 152627-152660 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 KY555146 Caulobacter phage Ccr32, complete genome 148520-148553 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 NC_019407 Caulobacter phage CcrMagneto, complete genome 150822-150855 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 KY555144 Caulobacter phage Ccr5, complete genome 151488-151521 8 0.765
NC_012997_2 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3464635-3464668 34 KY555142 Caulobacter phage Ccr10, complete genome 151438-151471 8 0.765
NC_012997_2 2.27|3465032|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3465032-3465065 34 NC_015513 Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY03, complete sequence 36683-36716 9 0.735
NC_012997_2 2.27|3465032|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3465032-3465065 34 NZ_CP018060 Moraxella catarrhalis strain CCRI-195ME plasmid unnamed, complete sequence 39473-39506 9 0.735
NC_012997_6 6.44|4836054|35|NC_012997|CRISPRCasFinder 4836054-4836088 35 CP013001 Bacillus thuringiensis strain XL6 plasmid, complete sequence 78779-78813 9 0.743
NC_012997_6 6.44|4836054|35|NC_012997|CRISPRCasFinder 4836054-4836088 35 NC_011775 Bacillus cereus G9842 plasmid pG9842_209, complete sequence 35712-35746 9 0.743
NC_012997_6 6.44|4836054|35|NC_012997|CRISPRCasFinder 4836054-4836088 35 NZ_CP045342 Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence 54679-54713 9 0.743
NC_012997_6 6.47|4836270|34|NC_012997|CRISPRCasFinder 4836270-4836303 34 MG757156 Mycobacterium phage Cuke, complete genome 31853-31886 9 0.735
NC_012997_6 6.30|4835054|34|NC_012997|CRISPRCasFinder 4835054-4835087 34 NZ_CP018877 Bacillus megaterium strain JX285 plasmid 4, complete sequence 103482-103515 10 0.706
NC_012997_2 2.11|3463971|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR 3463971-3464004 34 MF988720 Pseudoalteromonas phage J2-1, complete genome 15693-15726 11 0.676
NC_012997_6 6.30|4835054|34|NC_012997|CRISPRCasFinder 4835054-4835087 34 NZ_CP040906 Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence 81970-82003 11 0.676
NC_012997_6 6.30|4835054|34|NC_012997|CRISPRCasFinder 4835054-4835087 34 NZ_CP040873 Enterococcus faecium strain DB-1 plasmid punnamed1 9772-9805 11 0.676
NC_012997_6 6.30|4835054|34|NC_012997|CRISPRCasFinder 4835054-4835087 34 NZ_CP040876 Enterococcus faecium strain DB-1 plasmid punnamed2 105855-105888 11 0.676
NC_012997_6 6.30|4835054|34|NC_012997|CRISPRCasFinder 4835054-4835087 34 NZ_CP040850 Enterococcus faecium strain F17E0263 plasmid p_unnamned1, complete sequence 169173-169206 11 0.676

1. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

2. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

3. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

4. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

5. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to NC_019410 (Caulobacter phage CcrKarma, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

6. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

7. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to NC_019407 (Caulobacter phage CcrMagneto, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

8. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to KY555144 (Caulobacter phage Ccr5, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

9. spacer 2.21|3464635|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 8, identity: 0.765

gttaaagcattgggcgccaacaacacgaccatca	CRISPR spacer
cttaaggccttgggcgccaacaacaacccgacca	Protospacer
 ****.** ****************   * *.**

10. spacer 2.27|3465032|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to NC_015513 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY03, complete sequence) position: , mismatch: 9, identity: 0.735

aatagatattttgccatcaccatctttgcacata	CRISPR spacer
gattacctttttgccatcaccatgtttgcacagc	Protospacer
.** . . *************** ********  

11. spacer 2.27|3465032|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018060 (Moraxella catarrhalis strain CCRI-195ME plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aatagatattttgccatcaccatctttgcacata	CRISPR spacer
tgttttttatttgcattcaccatctttgcacata	Protospacer
 .*   *  *****  ******************

12. spacer 6.44|4836054|35|NC_012997|CRISPRCasFinder matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 9, identity: 0.743

agccatttgattaatatttactctttgtatatcca	CRISPR spacer
actaaatcccttaatatttcctttttgtatatcca	Protospacer
* . * *.  ********* **.************

13. spacer 6.44|4836054|35|NC_012997|CRISPRCasFinder matches to NC_011775 (Bacillus cereus G9842 plasmid pG9842_209, complete sequence) position: , mismatch: 9, identity: 0.743

agccatttgattaatatttactctttgtatatcca	CRISPR spacer
actaaatcccttaatatttcctttttgtatatcca	Protospacer
* . * *.  ********* **.************

14. spacer 6.44|4836054|35|NC_012997|CRISPRCasFinder matches to NZ_CP045342 (Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence) position: , mismatch: 9, identity: 0.743

agccatttgattaatatttactctttgta-tatcca	CRISPR spacer
gataatttcattaatattttctctttgtagtaagc-	Protospacer
... **** ********** ********* **  * 

15. spacer 6.47|4836270|34|NC_012997|CRISPRCasFinder matches to MG757156 (Mycobacterium phage Cuke, complete genome) position: , mismatch: 9, identity: 0.735

cgatgccgatgaagccatcgcggggttgggtgtg	CRISPR spacer
cgatgccgatcaagccatcgcgggagcatggttc	Protospacer
********** *************. .. *  * 

16. spacer 6.30|4835054|34|NC_012997|CRISPRCasFinder matches to NZ_CP018877 (Bacillus megaterium strain JX285 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.706

gagaggtaaaaccgatttttttctactttttgta	CRISPR spacer
acacgatccaacccatttttttctactgtttgtt	Protospacer
. . *.*  **** ************* ***** 

17. spacer 2.11|3463971|34|NC_012997|CRISPRCasFinder,CRT,PILER-CR matches to MF988720 (Pseudoalteromonas phage J2-1, complete genome) position: , mismatch: 11, identity: 0.676

aaaggcgaaagctgaacccgaagaggtcgaacca	CRISPR spacer
tgaggcgaaagctgaaccaaaagaggttactgtt	Protospacer
 .**************** .*******..   . 

18. spacer 6.30|4835054|34|NC_012997|CRISPRCasFinder matches to NZ_CP040906 (Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence) position: , mismatch: 11, identity: 0.676

gagaggtaaaaccgatttttttctactttttgta	CRISPR spacer
agttagtaaaaccgattttgttctgctttgtcct	Protospacer
..  .************** ****.**** * . 

19. spacer 6.30|4835054|34|NC_012997|CRISPRCasFinder matches to NZ_CP040873 (Enterococcus faecium strain DB-1 plasmid punnamed1) position: , mismatch: 11, identity: 0.676

gagaggtaaaaccgatttttttctactttttgta	CRISPR spacer
agttagtaaaaccgattttgttctgctttgtcct	Protospacer
..  .************** ****.**** * . 

20. spacer 6.30|4835054|34|NC_012997|CRISPRCasFinder matches to NZ_CP040876 (Enterococcus faecium strain DB-1 plasmid punnamed2) position: , mismatch: 11, identity: 0.676

gagaggtaaaaccgatttttttctactttttgta	CRISPR spacer
agttagtaaaaccgattttgttctgctttgtcct	Protospacer
..  .************** ****.**** * . 

21. spacer 6.30|4835054|34|NC_012997|CRISPRCasFinder matches to NZ_CP040850 (Enterococcus faecium strain F17E0263 plasmid p_unnamned1, complete sequence) position: , mismatch: 11, identity: 0.676

gagaggtaaaaccgatttttttctactttttgta	CRISPR spacer
agttagtaaaaccgattttgttctgctttgtcct	Protospacer
..  .************** ****.**** * . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1639039 : 1716189 59 Bacillus_virus(20.0%) protease,tRNA,plate NA
DBSCAN-SWA_2 2267144 : 2342907 28 Streptococcus_phage(33.33%) tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage