CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012803	Micrococcus luteus NCTC 2665, complete sequence	2 crisprs	DinG,DEDDh,WYL,csa3	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_012803_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012803_1

2040678-2040841

Orphan

Consensus_repeat	Method
GCCGAGCTCGAGGCCGGCCGGGCCCAGCTGGCCGC	PILER-CR

2 spacers

The CRISPR arrays of NC_012803_1

>merge|NC_012803|1|2040678-2040841|PILER-CR
GCCGAGCTCGAGGCCGGCCGCGAGCAGGTGGCCGCGGGACGGCAGCAGGCCCTGGACGCTGCCGAGGCCGAGCTCGACGCGCAGCAGCAGAAGATCGACGAGGGCCGGGCCGAGTACGAGCGCGGCGTCGCCGAGCTCGAGGACGGCCGGGCCCAGCTGGCCGC

>NC_012803|1|1|2040678-2040841|PILER-CR
GCCGAGCTCGAGGCCGGCCGCGAGCAGGTGGCCGC	GGGACGGCAGCAGGCC
CTGGACGCTGCCGAGGCCGAGCTCGACGCGCAGCA	GCAGAAGATCGACGAGGGCCGGGCCGAGTACGAGCGCGGCGTCGCCGAGCTC
GAGGACGGCCGGGCCCAGCTGGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012803.1\|WP_010080226.1\|2035599_2035965_+\|hypothetical-protein	unknown	unknown	unknown
NC_012803.1\|WP_010080214.1\|2047309_2047870_-\|NADH-quinone-oxidoreductase-subunit-K	unknown	unknown	gnl\|CDD\|236136
NC_012803.1\|WP_010080224.1\|2038420_2038897_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_012803.1\|WP_010080232.1\|2029839_2030817_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NC_012803.1\|WP_010080218.1\|2044335_2044743_-\|monovalent-cation/H(+)-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NC_012803.1\|WP_010080229.1\|2033898_2034549_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|153102
NC_012803.1\|WP_010080219.1\|2043981_2044260_+\|DUF4235-domain-containing-protein	unknown	unknown	gnl\|CDD\|379422
NC_012803.1\|WP_010080216.1\|2045077_2045695_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NC_012803.1\|WP_010080230.1\|2031714_2033574_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_012803.1\|WP_010080228.1\|2034626_2034836_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|129913
NC_012803.1\|WP_010080223.1\|2038893_2039406_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235825
NC_012803.1\|WP_010080217.1\|2044739_2045078_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|237148
NC_012803.1\|WP_010080215.1\|2045681_2047313_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237165
NC_012803.1\|WP_010080213.1\|2047866_2050965_-\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237154
NC_012803.1\|WP_010080231.1\|2030886_2031549_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NC_012803.1\|WP_010080212.1\|2051033_2052356_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225179
NC_012803.1\|WP_010080220.1\|2042902_2043904_+\|aminotransferase-class-IV	unknown	unknown	gnl\|CDD\|236114
NC_012803.1\|WP_010080211.1\|2052352_2052934_-\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NC_012803.1\|WP_010080225.1\|2036062_2038357_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NC_012803.1\|WP_010080227.1\|2034984_2035551_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_012803.1\|WP_010080214.1\|2047309_2047870_-\|NADH-quinone-oxidoreductase-subunit-K	gnl\|CDD\|236136	PRK07946, PRK07946, putative monovalent cation/H+ antiporter subunit C; Reviewed.	7.08827e-37
NC_012803.1\|WP_010080224.1\|2038420_2038897_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.74765e-15
NC_012803.1\|WP_010080232.1\|2029839_2030817_-\|DnaJ-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	6.52171e-99
NC_012803.1\|WP_010080218.1\|2044335_2044743_-\|monovalent-cation/H(+)-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	3.0805e-25
NC_012803.1\|WP_010080229.1\|2033898_2034549_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	6.4111e-42
NC_012803.1\|WP_010080219.1\|2043981_2044260_+\|DUF4235-domain-containing-protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	1.24758e-14
NC_012803.1\|WP_010080216.1\|2045077_2045695_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	4.40006e-35
NC_012803.1\|WP_010080230.1\|2031714_2033574_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_012803.1\|WP_010080228.1\|2034626_2034836_-\|MMPL-family-transporter	gnl\|CDD\|129913	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein. The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate].	3.93836e-12
NC_012803.1\|WP_010080223.1\|2038893_2039406_+\|hypothetical-protein	gnl\|CDD\|235825	PRK06547, PRK06547, hypothetical protein; Provisional.	1.97886e-32
NC_012803.1\|WP_010080217.1\|2044739_2045078_-\|sodium:proton-antiporter	gnl\|CDD\|237148	PRK12599, PRK12599, putative monovalent cation/H+ antiporter subunit F; Reviewed.	2.48998e-10
NC_012803.1\|WP_010080215.1\|2045681_2047313_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|237165	PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NC_012803.1\|WP_010080213.1\|2047866_2050965_-\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237154	PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NC_012803.1\|WP_010080231.1\|2030886_2031549_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	1.49363e-36
NC_012803.1\|WP_010080211.1\|2052352_2052934_-\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	2.7806e-94
NC_012803.1\|WP_010080220.1\|2042902_2043904_+\|aminotransferase-class-IV	gnl\|CDD\|236114	PRK07849, PRK07849, aminodeoxychorismate lyase.	2.04689e-100
NC_012803.1\|WP_010080225.1\|2036062_2038357_-\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	7.85156e-66
NC_012803.1\|WP_010080212.1\|2051033_2052356_-\|MFS-transporter	gnl\|CDD\|225179	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only].	7.80721e-100

>NC_012803.1|WP_010080223.1|2038893_2039406_+|hypothetical-protein
MTRPALIGLDGRSGSGKTVLAAALAARIAPFARVEVIEIESMYQGWDGLAAAVGDDGPYPAVVRALREGGTATWTTWDWQRAAPGPPRGTAPADVVVCEGVGALSTAARPLLDLAVWLELETPARRTRALARDGETFAPHWDRWAAQEEDYLARHAPRTAADLVLRLPSA
>NC_012803.1|WP_010080224.1|2038420_2038897_+|winged-helix-turn-helix-transcriptional-regulator
MTTQPPSAPAEHLAVVHAMRVFSESAEHAVDQAGRGVGLHRTDLRALAYLMARAAAGEPVTASDLGAHLHLTRASATALVDRLAAAGHVRRRRDEGDRRRVLVEHTDTARRDGQRAFQPMSQRLSAALEGFSAAELRAAVRVLEAATAALTDPTPEDP
>NC_012803.1|WP_010080225.1|2036062_2038357_-|MMPL-family-transporter
MPTPPDLSAFRTPAATGRPSRGLRLGLAAALAVVWLAVLGLGGPVFGAIGDVSSNDQATFLPASAESTRAGEEAAAFQDGEAVPAVVVGPASTVDPATAFPALADLAGRLGEVPGVTDVAGPIPSDDGAAVQFLAFVDSSAGAERPVADVVADLRGVVADPAAADPALAGTVAADTEWHVGGPAGLVAELGGAFAGIDGLLLLVALVVVFVILVAVYRSVLLPVLVLLTAVAALCGAIVAVYGMALAGWIQLNGQAQGILSILVIGAATDYCLLLVARHREELLVRADVGEALRAAVRGSFGAITASASTVALALLILMASDLNSTRSLGPVAATGVAFAWLAALTLLPALLRLTGRAAFWPTIPSPERARRRAERRAARGRAFTPPRDGAGRPIAGLEEDHGVWTRVGAVVARRPRLVWVATTVVLLALCGGLLQLRADGVAQEDVLLGDSDARQAQALLTEHFDAGAGAPAQILAPAGDAEAVLAAVTEDPGVAEAAVTTDTPEAAAGLPPGALDAEGGTGAASAPEPQPRVVDGRVLISATLADPGESLAAQQTVARLRDRLADLPATGEILVGGPAAQALDTNVTTQRDLRVVIPLILAMLLVILAVLLRSLLAPVLLVAATVVSFGAALGVSALVFRHVFGFEDADPTVPLYGFVFLVALGIDYTIFLMTRAREETPRHGTRAGVLRALTVTGGVITSAGVVLAATFAALAVIPLMFMVQLAFIVAFGVLLDTLIVRSLLIPALVRDIGPKVWWPAKVD
>NC_012803.1|WP_010080226.1|2035599_2035965_+|hypothetical-protein
MEVWRILTAVFLGATLASAGALGTAHGIWVILPALCVVAFLTLDWRDRDRPRLSTPRMAALLLAIAVGLMVLPRVDWSPYPIILIAFAVASGTFTWWALEDVGARSLDVTTASPGESHAHT
>NC_012803.1|WP_010080227.1|2034984_2035551_+|hypothetical-protein
MVTTTLAAPSLASAQFRDDQVTHTQGQPSTDKVDDAMRLVRQAEMEDPAGFARRVAILEQLGDTFRLPHESTLGSTDMDRLAFAATVQDPLVLQGLVEMVSRGDIEIIEGTHGAPVWISHLDPEDLTASKEPTTQDLPACPSAWAAALAWIGANALMCTPLVSVPPAAVGCALTFGIGGFIIDVNQGC
>NC_012803.1|WP_010080228.1|2034626_2034836_-|MMPL-family-transporter
MTGGVATSTVVALAATFAALAVIPLMFMVQLAFIVAFGVLLDTLIVRSLLIPALVRDIGPRVWWPARAA
>NC_012803.1|WP_010080229.1|2033898_2034549_+|DNA-starvation/stationary-phase-protection-protein
MAEKNAAEYTVPGLSLSTGRRTAEILQGRLHALNDLQLTLKHAHWNVVGPGFIGVHEMLDPQIELVRGMADVVAERIATLGVSPAGTPGALVAARAWDDYTLGRASTLEHLAALDLVYDGVVTDHRAAIDATEDLDPVTQDILIDQVAQLELFQWFMRSFLTTDDGRLSSAGAATEAAAAGRVKDDQAAPAPQGARTKKSGAKKATASNAKKSKKK
>NC_012803.1|WP_010080230.1|2031714_2033574_-|molecular-chaperone-DnaK
MSRAVGIDLGTTNSVVAALEGGDPVVIANAEGARTTPSVVAFSKGGDVLVGEVAKRQAVNNPERTFASVKRHMGTDWTTEVDGKKYTPQEISARTLMKLKHDAEEYLGEKVTDAVITVPAYFNDAERQATKEAGEIAGLNVTRIINEPTAAALAYGLEKGKEDELILVFDLGGGTFDVSLLEVAKDEDDFATIQVRATAGDNRLGGDDWDQRIVDWLLQQAKSKGADLSKDKIALQRLKEAAEQAKKELSSATSTSISLQYLSVTPEGPVHLDEHLSRAKFQDLTKDLLERTRKPFEDVIKEAGVKVSDIDHVVLVGGSTRMPAVSDLVKELTGGKEPNKSVNPDEVVAIGAAVQAGVLAGERKDVLLIDVTPLSLGIETKGGVMAKLIERNTAIPTKRSETFTTAEDNQPSVSIQVFQGEREFTRDNKALGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDKGTGTEQSMTITGGSSLSKEDIDRMVKDAEAHADEDRKRREAADRRNQAEQSAYSVDKLLQDNADKLPEDVKTGVQADVDALKAALEKQDNDDEVAAAFEKLQASQVKIGEALYAQQGAESADAGAESAAPQGDDEDIVDAEVVDEDDEKKA
>NC_012803.1|WP_010080231.1|2030886_2031549_-|nucleotide-exchange-factor-GrpE
MSADQQRPHGSSDAERGSEEEPIVFNDRRRIDPETGEPRVSAESAAEQAEDGDALAQAERILDEAGAQAGTEAPQPAASDREAELETDLRRLQAEFVNYKRRVDRDRDLARDAGVVKAVTALLPVLDDIDAARAAGDLTDGPFAAIATKLDTALAGLGLERHDQEALAGVEFDPAVHEAVMRQPHAEVPADHVVQVFRNGYLRDGRVLRAAQVMVSAGDE
>NC_012803.1|WP_010080232.1|2029839_2030817_-|DnaJ-domain-containing-protein
MASQDWMDKDFYATLGVSKDASESDVKKAYRKLARTHHPDQNPGDEAAEKKFKEISEAYAVLSDPQERQEYDAIRAMGGGARFSASGGAGGGGFEDVFGGMFGGGGGPRTTQSGPDLSDLFSGMFGGAAGQTGGFGDAGYARPRPTKGADRTATTTISFRGSIQGTTVSLRAPDGETIEVKIPKGIRDGQKVRARGKGSPGAAGRGDLLVTVHVREHEFFHRDGDDLRITVPVTFPEAALGATIEVPTLERPVKVKVPAGSQSDRVLRLKGRGVERGTTTGDLLVELHVTVPTELDDDARAAIEALQSALAGDDPRRELARKAAW
>NC_012803.1|WP_010080220.1|2042902_2043904_+|aminotransferase-class-IV
MRPTAFSPAAGSPVLVLLETDADGAPAPRLADPAVPHLSVTDQGVTRGDGIFETALAVADGLGTLRMRKLGAHLGRLAASAAALQLAAPEAAAWEAAVALGLRAFTEANDVAPGDRLAVRLTVTRGPDAAAGGVPAPTAWALLSPAPAIQDEERRRGLRVLLLDRGIDSQAPERSPWLLTGAKTLSYAVNMAALRHARDHGADDVVFTSADGYLLEGPTSTVLIVRTGEDGVRRLLTPLRQKGILAGTSQAVIFAAAHADGWELGYGPLVPADLQGAEGVWLVSSVRGVLPVRAVDGVEIPVDHELTGMLQAHLDADGDPGRHVSGDPVPTAG
>NC_012803.1|WP_010080219.1|2043981_2044260_+|DUF4235-domain-containing-protein
MNTLAQKALSAGITLVGGIVGSRVVAGGWRLVTGHSAPDDAADETLPLVEALSFAFISAGVAALLKVAGQRGAGAAIRKVSESTAHRVDHEV
>NC_012803.1|WP_010080218.1|2044335_2044743_-|monovalent-cation/H(+)-antiporter-subunit-G
MTDTATLLDWLAAFLLVSGAFFSLVAGVGLLVLPDLLARMHAAAKPQVLGLLLMLAGLGIVWRSWVWLPVLFLAWVTQMVTAPVASHLVGRTGYRTKHARRELLHRDELAAVVRRAESPADPGPRRVGARPRGRR
>NC_012803.1|WP_010080217.1|2044739_2045078_-|sodium:proton-antiporter
MDPMDLATWAGGALLVVGAVGALYRIVRGPSLLDRAVATDVLLVVFSGMLVLEMAVHRHTHHVVLVVLAAAVGFVGSVTVARFAEDRRPDHSFEDQARVPGTTDVPGGEEGR
>NC_012803.1|WP_010080216.1|2045077_2045695_-|Na+/H+-antiporter-subunit-E
MPGSDSARRGVVRPDRIRGIVAQWPLILVMVAVWCALWQDFAPHVALTGLAFALLIIGLFPMPDIPFSGRLNPWWSLVFTVRFLVDVVRASVNVTGTVLLRGRRARGSIVGVPLRSHDDLIITLVSHALALVPGSIVLDVDRVRSVLYLHVLDATTDEDVEGFRAKALDVEAGIIRAVGTREDLELVRRFPSSAPPAARPPKEEA
>NC_012803.1|WP_010080215.1|2045681_2047313_-|Na+/H+-antiporter-subunit-D
MSIGTLPLTDLAPLAVMLPVLGAAVTFMLVRRPRAQITVTVSALVLTLVLDALLLAAVWDTGIAAVHLGGWPAPLGITLVVDRLSALMLVVSALVTLAVLLYASAQGLINRDEGGPVSIFHPTFLILVAGVSNAFLAGDLFNLYVGFEILLTSSYVLLTMGGTAQRIRAGITYVVVSVLSSVVFLIAIAMIYAATGTVNMADLAVKLGELPTDVQMVLHVLLLVGFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAMIRTETLLFPGEHVNALLLVVAALTMVVGILGALAQTDIKRILSFILVSHIGYMIFGLGLATEAGLAATVYYVAHHITVQTALFLVTGLIENRAGTANIDRLGSLAKVSPFVSVLFLVPALNLGGIPPFSGFLGKVGLLRGGVEQATPLAYTLVGVSLLVSLLTLLVVVRVWTRAFWRRVEDVEHPPAQLVAAYERAVARGERPRPLEPGLVLPTTALVGLTLVFTVAAGPLFALADEAATDMLDRSPYIAAVLDDAAAERAAATLSVDPTEVHDARK
>NC_012803.1|WP_010080214.1|2047309_2047870_-|NADH-quinone-oxidoreductase-subunit-K
MMTVDLALLLAMGVMFAGGIYLVLERSLTRILLGIMLINNGAIMLLFLASGGVGLAPLFVRGRDPHEYADTLPQALILTAIVIGFAVVAFLTAMIYRSWLLIREDEVEVDAEDVKIARMPAWDAEDDAELVEESSEFLDDAADPNAHYEHATESRPHVRHASPTPPARPGPASAVRAHRADGGPRP
>NC_012803.1|WP_010080213.1|2047866_2050965_-|Na+/H+-antiporter-subunit-A
MLVILTALFVVALAAPVIFRWTGRQGFYLLAAAPAAGFVWLLTQLPHVFALQEALDAGRPVPASAAHLDRTVPWVPYLEIELAFRMDVLAAFMSLIVLGVGALVLAYCARYFREHEPRNAVFGGQLLAFAGAMFGLVTTDDLMVLYTFWEITSVLSFLLIGYSGHRIFARRSAITALIVTTFGGLAMLAGLIMLAHFAGSWRISGVLAAAPGLLADDGGRVLLEVAVGLVLIGALTKSAQAPFHFWLPAAMAAPTPVSAYLHAAAMVKAGVFLVARLAPEFHGLAMWQVLVIGVGLWTLLLGGWRALRQTDVKLVLAYGTVSQLGFLMVANGLGTRDAAMAGLAMLLAHAVFKAPLFMIVGIIDHEAGTRDLRKLSGIGRRHPVLAAVAVAAGLSMAGLPPLFGFVAKESVLESLAAHGAAHGGVWAWSPLVVMALGSVLTFAYTWRFLWGCFAVKRDEAGETVPETQFHTRVTTLELAPAALLALVGLVLAFLPGPVEGIITAHTGSLPPLDPAEKPAYLALWHGWTPILALSAGIWVLGALLALARRPFEALQERTESPLDAARGYRRLIGYVDETAVWVTGRTQTGSLRRYLAIILTTAAGLPVAFLLFPAGREDRLLATAFLDGDIIWAESPAQLVIVLMIAVATVFAVRARRRFKAIMLVSVTGYGAAALFALRGAPDLAITQVLVETIILVTLILGLRVLPPDWYDRRTGSRRLGRLAVAVGFALTMMWIAATALAARTAERISLPMPELAYTDGYGANAVNVTLVDIRAWDTWGEITVLAAAATGVASLIFLQHRDGRTRSIDDVAPGSVGDFGADSSLGARELSVVRSFAVDDRKGQWLVAGHTMAPERRSIILEVVTRFMFPIMMLLSVYLLLAGHNTPGGGFAGGLLAGLALTLRFLAGGRYELQEASVIPAGPMIGLGLAIATLTGIAPLFFGGQILQSYVVEFTDLPLFGDALKLVSATAFDIGVYFVVVGLVMDVLRSLGGEVDRRGEEARRARLRAAARRRHPRMPTPSTPDAPEAAR
>NC_012803.1|WP_010080212.1|2051033_2052356_-|MFS-transporter
MTDVALPPVASAAPRRQVAAWALWDWGSAAFNAVMVTFVFGTYLASDAFGPDERGTAWLSTALAIAGVVIALTAPVMGRRADGAGRRRLWLGVMTAAVIACTAACFFVTPRESSLLLGVTLIALGTVFFEFAEVQVNAILVQISTPATIGRISGIGWGAGYLGGILLLLIVFVGFVSGDAHWFGITEDEGLNIRVVALVAAAWFLVFAIPVLVAVPDPAPAPSPGGGPRRESLAASYRALGSTLARMWREDRNTLWFLLSSAVFRDGVGAVFVYGAILGTTVYGLAASDVILFAIAANVVAALGAFVGGRLDDAVGPRRVILGSLAAMVLVAGALFFASGTLAFWVGGLALCLFVGPVQSASRAFLGRLTTPRTAGEVFGLYATTGRAVGFITPALVTLALALHPDNRVVIPVIAVVLVAGGLLFARVTEPITRSAESVR
>NC_012803.1|WP_010080211.1|2052352_2052934_-|dCTP-deaminase
MLLSDRDIRAELDSGRVGLDPLDPTMVQPASVDVRLDRFFRLFDNHRYAHIDPRQEQDELTRLVEVDPDEAFILHPGEFVLGSTYEQVTLPDDLAARLEGKSSLGRLGLLTHSTAGFIDPGFSGHVTLELSNVATLPITLWPGMKIGQLCFFRLSSSAQSPYGTGANQNRYQGQRGPTASRAHRDFHLTRIER

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Crispr_ID: NC_012803_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012803_2

2476336-2476436

Orphan

Consensus_repeat	Method
CCCTGCTGGGCGCCGCCGAAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012803_2

>merge|NC_012803|2|2476336-2476436|CRISPRCasFinder
CCCTGCTGCTGGCCGCCCCAGCCGCCGCCCTGCTGGGCGCCGCCGAAGCCGCCGTCGTTGTTCCCCCCGGCGCCGCCGCCGGCCGGGGAGCCGCCGAAGCC

>NC_012803|2|1|2476336-2476436|CRISPRCasFinder
CCCTGCTGCTGGCCGCCCCAGCC	GCCGCCCTGCTGGGCGCCGCCGAAGCCGCCGTCGTTGTTCCCCCCGGCGCCGCCG
CCGGCCGGGGAGCCGCCGAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012803.1\|WP_012751158.1\|2474200_2475076_+\|DUF3800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378919
NC_012803.1\|WP_010079799.1\|2471685_2472801_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	unknown	unknown	gnl\|CDD\|349469
NC_012803.1\|WP_010079801.1\|2469895_2471131_-\|30S-ribosomal-protein-S6--L-glutamate-ligase	unknown	unknown	gnl\|CDD\|182468
NC_012803.1\|WP_111763569.1\|2465330_2466659_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_012803.1\|WP_010079802.1\|2468653_2469880_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173840
NC_012803.1\|WP_010079789.1\|2483394_2484540_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NC_012803.1\|WP_010079791.1\|2481209_2482295_+\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NC_012803.1\|WP_012751157.1\|2472841_2474074_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NC_012803.1\|WP_012751156.1\|2467452_2468628_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NC_012803.1\|WP_010079794.1\|2477590_2479078_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NC_012803.1\|WP_010079787.1\|2485035_2486487_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NC_012803.1\|WP_010079800.1\|2471158_2471689_+\|ATP-dependent-zinc-protease	unknown	unknown	gnl\|CDD\|226553
NC_012803.1\|WP_002857790.1\|2476979_2477285_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NC_012803.1\|WP_010079793.1\|2479176_2479518_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235658
NC_012803.1\|WP_010079796.1\|2475284_2475746_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NC_012803.1\|WP_010079792.1\|2479508_2481041_-\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|227937
NC_012803.1\|WP_002857788.1\|2475774_2476014_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NC_012803.1\|WP_010079788.1\|2484683_2484983_-\|Rho-termination-factor-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|197322
NC_012803.1\|WP_010079786.1\|2486552_2487164_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239645
NC_012803.1\|WP_010079790.1\|2482402_2483422_-\|acyltransferase	unknown	unknown	gnl\|CDD\|238878

Protein	Function_ID	Function_description	E-value
NC_012803.1\|WP_012751158.1\|2474200_2475076_+\|DUF3800-domain-containing-protein	gnl\|CDD\|378919	pfam12686, DUF3800, Protein of unknown function (DUF3800). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.	3.70894e-05
NC_012803.1\|WP_010079799.1\|2471685_2472801_+\|succinylglutamate-desuccinylase/aspartoacylase-family-protein	gnl\|CDD\|349469	cd06251, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup. A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.	7.34187e-90
NC_012803.1\|WP_010079801.1\|2469895_2471131_-\|30S-ribosomal-protein-S6--L-glutamate-ligase	gnl\|CDD\|182468	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase.	6.32263e-106
NC_012803.1\|WP_111763569.1\|2465330_2466659_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_012803.1\|WP_010079802.1\|2468653_2469880_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	3.02875e-176
NC_012803.1\|WP_010079789.1\|2483394_2484540_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.66734e-43
NC_012803.1\|WP_010079791.1\|2481209_2482295_+\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NC_012803.1\|WP_012751157.1\|2472841_2474074_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.57818e-64
NC_012803.1\|WP_012751156.1\|2467452_2468628_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	1.63372e-126
NC_012803.1\|WP_010079794.1\|2477590_2479078_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NC_012803.1\|WP_010079787.1\|2485035_2486487_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NC_012803.1\|WP_010079800.1\|2471158_2471689_+\|ATP-dependent-zinc-protease	gnl\|CDD\|226553	COG4067, COG4067, Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones].	1.84624e-39
NC_012803.1\|WP_002857790.1\|2476979_2477285_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	4.41428e-38
NC_012803.1\|WP_010079793.1\|2479176_2479518_+\|hypothetical-protein	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0.00736411
NC_012803.1\|WP_010079796.1\|2475284_2475746_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	1.09689e-59
NC_012803.1\|WP_010079792.1\|2479508_2481041_-\|DUF2029-domain-containing-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	1.70598e-27
NC_012803.1\|WP_002857788.1\|2475774_2476014_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.71764e-32
NC_012803.1\|WP_010079788.1\|2484683_2484983_-\|Rho-termination-factor-N-terminal-domain-containing-protein	gnl\|CDD\|197322	cd09088, Ape2-like_AP-endo, Human Ape2-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes human APE2, Saccharomyces cerevisiae Apn2/Eth1, and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For examples, Ape1 and Ape2 in humans, and Apn1 and Apn2 in bakers yeast. Ape2 and Apn2/Eth1 are both found in this subfamily, and have the weaker AP endonuclease activity. Ape2 shows strong 3'-5' exonuclease and 3'-phosphodiesterase activities; it can reduce the mutagenic consequences of attack by reactive oxygen species by removing 3'-end adenine opposite from 8-oxoG, in addition to repairing 3'-damaged termini. Apn2/Eth1 exhibits AP endonuclease activity, but has 30-40 fold more active 3'-phosphodiesterase and 3'-5' exonuclease activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	0.00159901
NC_012803.1\|WP_010079786.1\|2486552_2487164_+\|NUDIX-hydrolase	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	4.1081e-48
NC_012803.1\|WP_010079790.1\|2482402_2483422_-\|acyltransferase	gnl\|CDD\|238878	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.	2.57785e-39

>NC_012803.1|WP_002857788.1|2475774_2476014_-|30S-ribosomal-protein-S18
MAKAELRKPKPKSNPLKAAKITEIDYKDVALLRKFISDRGKIRARRVTGVTVQEQRKIAQAVKNAREVALLPYAGAGRG
>NC_012803.1|WP_010079796.1|2475284_2475746_-|50S-ribosomal-protein-L9
MAKLILTQEVAGLGTSGDVVEVKNGYARNYLLPRGFATVWTKGGEKQVESLQKARAARAVANLEDAQAQAAQLQSAPVQLERTAGAEGRLFGAVQTADVAEAIEAAGLGSVDKRSITLPAHIKSVGNHEAQVRLHEDVIATVQLQVVAAKAKK
>NC_012803.1|WP_012751158.1|2474200_2475076_+|DUF3800-domain-containing-protein
MRVYYFDDSGDRSGDPTKPYFALGGFGIEAARVPELGSKIRAVAERYGMPLGHPVELKFNQVGRSKDNKPRKPHWMIRAGLTDPNERRAFVYSALREAAQVPSVEFLCVVVDQRQLREEAHPLKEALTPLLERIQMNAKKHATHALVLMDEEQADDKALREVMRNGSEFLKYDRILDTIAFIPSEESIGIQVADLAAGAISRYFNSNDPGYVRTFLRSTACSPSGDPNGYGVKVYPFGRFAGPARRSAPWGSVDREIHQIEFARYPGATLGWRNDGAPTFVWRHDWDSGLD
>NC_012803.1|WP_012751157.1|2472841_2474074_-|MFS-transporter
MEAMPSAPPPSDPAGSTAAPRPPLWTRPFILVSATYLFVAMIFYTLMTAMALYAVTSFGASDAEAGVVVGAFVLGAVLTRMTTTPATFAWGRRRVLLVALACYVLTTAAYLWADSLATLTAVRLLNGMCFGAAGTVLATAVQRIVPPVRRSEGTGWFSTSMTIAGAVGPMVALQLSTALGYDALFRACIGFTGMALLIALFLRVPEPPLTGRFRLHRADVFSAEVAPAAGVALASGFMYGGILAFMATFAQQQGYPATVPSLFFLLFAVGTIVGRTVLGVLHDRHGDNAVVYPILAGMAVSYAVLALWREPAGMLVAGALLGLTYGPVVSVFQTIAIKVVRPTEIGVATGTFFLLLDLGTGLGPMVLGAVAAAVGIPVMYLLSGGVGVALLLYYRLVHGGRAIARRPSPA
>NC_012803.1|WP_010079799.1|2471685_2472801_+|succinylglutamate-desuccinylase/aspartoacylase-family-protein
MSPRPARAPFAFGGVEVAAGRRHELSLPISQLVTGADVTLPVHVLHGREDGPTVWVSAAIHGDEVAGVEIIRRVLERLQPTQLRGTLLAVPIVNVLGVMAGDRYLPDRRDLNRSFPGSARGSLASRIAHLMMTEVIGRCTVGIDLHTGADRRSNLPQIRCDLEDPQTRALAEAFGAPVLFHARLRDGSLRAAARETGARVLLYEAGEAWRFDEYAIAPGVDGVLRVLAALDMVDPADVGLTEPGPDAVVDAPGPLPGEVPEERTTDVPEATDATGEDTAAVHPDVVDGEQDAPYLVWQSTWVRARADGLVHLHVSLGERVSAGDRIGALYNSFGRRLAHVKAELTGVVIGRTEAPLVHRGDALVHIGGWDA
>NC_012803.1|WP_010079800.1|2471158_2471689_+|ATP-dependent-zinc-protease
MSASKHTAPAPHGVPPTDDGAARPGLVGWREWVGLPAAHTPWIKAKIDTGARTSALHAFGIERFTRDGAAWARFEVHPWQTSAADARTAELPVADLRTVRSSNGTAQERVVVVMPLTLAGRTIEAEVTLTHRDEMGFRMLVGRTALAAGGLLVDPAASYVGGQPPRGVRRRNRGRA
>NC_012803.1|WP_010079801.1|2469895_2471131_-|30S-ribosomal-protein-S6--L-glutamate-ligase
MKLAILSRSLRAYSTQRLKTAALERGHQVKVLDTLRFGIDLSSDEPDLMFRGRPLSGYDAVLPRIGNSVTYFGTAVVRQFEQMDVYTPNTAAGIMNSRDKLRATQILSRHEIDMPATVFVRNRGEVSTAIDMVGGAPVVIKLLEGTQGIGVILAPTKKVAEAIIETLHGTNQQVLIQRFVEESKGKDIRALVVGDRVVAAMRRRAQGDEFRSNVHRGGTVERVELSPEYAETAVRAAHIMGLRVAGVDMLEGEHGPLVMEVNSSPGLQGIEAATDLDVAGAIIDYVADQAGFPDIDVRQRLAVSTGYGVGEITVHAGSGWVGQSIEDSGLLAKDLQVLTLHRGTSVFPNPADTKVLEEGDRLLCFGKTENMRALIPARARRPKRVRKLPATPILASVAEEAPAPEAPADDA
>NC_012803.1|WP_010079802.1|2468653_2469880_+|acyl-CoA-dehydrogenase-family-protein
MTTPFHAEADSFLGRADVVGLDSLFSAEEKAVALQVRGFVDEHIRPHIARWYDDAVFPREIVPELGRLGVLGMPYEGHGMPGRSAVEYGLAAQELEAGDSGLRTFVSVQGSLAMGAIHKHGSEEQKAQWLPRMTIGEAVGCFGLTEPGAGSDPASMTTTARQEPGGDWVLDGVKRWIGLATLADVAIIWAQTGEPGDGRGVRGFVVPTDTPGFRAEAITQKLSMRASVQCEIHLDGVRLPASAMLPADSAVGLKGPFQCLNEARYGIIWGAMGAARDSFDAVLDYAMERQQFGVPLASHQLTQAKLADMAVAIGKGYLLAHQIGRAKDAGPLTPAMISAGKLDNCRVAIGIAREAREMLGGNGITLEHSPLRHANNLESVRTYEGTDEVHQLTLGRHLTGIGAFAPAR
>NC_012803.1|WP_012751156.1|2467452_2468628_+|CoA-transferase
MPPATTAPSPASLPLDGVLVADFSRVLAGPLATMTLADLGARVIKVEHPKRGDDTRGWAPPRSATGATYFESVNRNKESVGWDLKDPEDQRRAAALAARADVVVHNLKPGTMERLGLGYDDVARENPSVVYAAVSGFGDREGRDLPGYDFIVQAAGGLMSITGEPDAPMKAGVALVDVLTAKDLTAGVLAALLRRERTGEGAHLRLNLLSSLQGALANQGQAWLGAGVVPRRMGNDHPSIAPYQLLACRDAPLAVAIGNDAQFRTFAAALGVPELAEDPRFTTNTDRVEHREELRTALEDALSAETAAHWRDVLQAERLPVGLVSTVAEGVELAESLGLEPTVEVQDRSGAPAGRQFRHPVQWDPPVAHPRHAPPALGADTAAVNTWLDAR
>NC_012803.1|WP_111763569.1|2465330_2466659_-|replicative-DNA-helicase
MPPQDLEAERSVLGGMMLSKDAIADVVELLRGHDFYRPSHEMIYEAIIDLYGRGEPADAVTVADLLNKRQELSRVGGPAVLHELIQSVPTAANASFYAEIVAEKAVLRRLVTAGTKITQLGYQGDGEVEEIVNEAQSEIYKVAENRQSEDYVRLAEIMEHAVDEIEAAGNQGEGLTGVPTDFYDFDELTQGLHGGQMIVIAARPAVGKSTLALDFARAAAIHHNMATVFFSLEMGKNEIAMRLLSAEATIALQDLRKGTIRDDQWSKIAATVGRLNEAPFFIDDSPNMTMMEIRAKCRRLKQKNNLKMVVLDYLQLMSSGKKVESRQQEVAEFSRALKLLAKELDVPVIALSQLNRGSEQRTDKRPQVSDLRESGSIEQDADMVILLHREDVYDKESPRAGEADLIVAKHRNGPTKTIVVGFQGHYSRFSNLAQDGGGSGGF
>NC_012803.1|WP_002857790.1|2476979_2477285_-|30S-ribosomal-protein-S6
MRAYELMVLIDPEVDERTVEPTLKKYLEVVTNAGGTVDNIDVWGRRKTAYEIQKKSEAIYVVVNFQSEPAATQELDRLLNLNETILRTKIIRPEEQKITAE
>NC_012803.1|WP_010079794.1|2477590_2479078_-|M18-family-aminopeptidase
MTPVTRDTVAELPAHLRDLAEFVTASPSSYHAAEEVARRLEAVGFTRLDETVDFPSAPGGYVVVRDGAAVAWIVPTGAGALGRDEGAEARAAGPDEAGPNAGVVPVFRALGAHTDSPGFKLKPNPATVTADGWVQAGVEVYGGPLLNSWLDRELRFAGRLALDDGTQVLAATGPVGRIPQLAIHLDREVNEGLRLKRQRHTNPVVGALAPRGEDAGEAEADGLAARVPGDVLTALAATAGVDPAAVRGHDVVVADAQAPGLFGLAGEFFASGRLDNLSSVHAGLVALEELAREHGGAEGAIAYEGTVAGGVAGEASGAPVIPLLAAFDHEELGSASRSGAAGPLLEEVMGRVLEALGVAGQGRARAIAGSWLLSADAGHLVHPNYAERHDPVNHPRVNHGPLLKINANQRYATDAGGEAAFARWCGVAGVPFQEFVSNNDVPCGSTIGPISATRLGIRTVDVGLGLLSMHSAREMCGVRDVEHLTAAVREFFRGV
>NC_012803.1|WP_010079793.1|2479176_2479518_+|hypothetical-protein
MDIMIAVAVGVFLLVAWTVGGWAIVRMGFTRDGDAARTPAHDDGAARPVHPGAAADPATDPHVMWREQMKAATAASGAQCVCPPPPREDGAAETGTTAPPSSPDCPIHRWDYA
>NC_012803.1|WP_010079792.1|2479508_2481041_-|DUF2029-domain-containing-protein
MRPAPAHAATPSEPPTHAADGAPSDAVTAPGVPAGRSADSAPSGTLPAPGERGGRFQLAGGLAANGPGRGTGSWAGPVALTGLLVALAAVVTVLQKSPCLLHGWGAPDVYYAGCYSDWAALYGGRGFAADPWAPFRAGSTFEYPVLMSVVGSVAAWITQALPFSPEQGTVVFWLVNFGFVVVLWAVVAVLTVRMAGRRWTDGLMVAVAPGIVLAGTINWDLWAVALLACGMYAWSRGRSLTAGVLFGLGAAMKLYPLLILGPLLILAVRSRRWRPFLLAAGGTVAAWAAVNVPLMVVNFQAWSVFFTFSGERGPGLSSVWHAWDVTAAQAGWAFVPEDSLTLLAYGTFAVCCLGIFVLGVRVRHTPRLAQLTFLVVAAFVLTNKVYSPQFVVWLIPLLALALPRWRDFWVWQTVEALHFFAVWMYLAKGVAETPPQHSMDDSVYVAAILAHMLAVLWLCGRVVWEMLHPAEDLVKRDHGGHPDTDPLAGAYAADSGPARGRSGRPAAVQA
>NC_012803.1|WP_010079791.1|2481209_2482295_+|inositol-3-phosphate-synthase
MATNPIRVAIAGVGNCATSLIQGVEYYREAKATDTVPGLMHVQFGDYHVSDLEFVAAFDVDAKKVGLDLSEAITASENNTIKIADVPHADVTVQRGPTLDGLGKYYAETIEESEAEPVDVAQALRDAEVDVLVCYLPVGSQRATEHYAQAAIDAGVAFVNALPVFIAGTPEWAEKFTAAGVPIVGDDIKSQIGATITHRVMAKLFEDRGVTLDRTYQLNVGGNMDFKNMLERERLESKKISKTQAVTSNTSAQLGEKDVHIGPSDYVAWLDDRKWAFVRLEGRNFGDAPVSLEYKLEVWDSPNSAGVIIDAVRAAKIALDRGIGGPILSASSYFMKSPPVQHNDDAAHELVEAFIRGDIER
>NC_012803.1|WP_010079790.1|2482402_2483422_-|acyltransferase
MAAGAILLLTALLADLSTRLIEEPILHEGFRGAFGRWGAAARRAFTGGAGPIGRFAAAATVLGLVAVPAAAMAAVVHSPAQTQLEQDIAQAEESLKAAEAAQQAARESRAAEQSKRAEAEASASPGSPAPGDAEGSAGATPSPGSSAEPSGLGLGDPAVARPTYSKEQLTAALPPSELGPDVTLIGDSVSLSAAPQLMEQLPGMLLEAEVGYQIWDAADEIEKLKADGQLSDVVVVALGANGTTHRGDWEKILAAVGEDRLLVLVVPHGPMDWIADVQRQMEAQATAHPDRIVLADWDAVAKQHVTDFSADGVHPRADGQAMYAQLVRLTIEDRLGVRR
>NC_012803.1|WP_010079789.1|2483394_2484540_-|acyltransferase
MSSDQRTAPVPRHALSPQDGAPAVKVGTRVSRGPGRVTALDGLRGIAVLAVLVFHAWPTFLRGGFVGVDMFFVLSGFLITTGLVRGVDAGRGVALGTFWMKRVRRLIPAMLMALVGTTALAWLAVDEFPAGLGRQWFGALTYTSNWVMILEGGDYFNRASPPLFEHLWSLAIEEQFYILWPLLLWGLLLLTWPPRSTVNSGRVADRRRILAVAVAAVASAAWMAWGSWHGFEQARLYFGTDTHAFGLLFGACVAIGLAHVPRPEHGGPEPRTSATRVAVAWGAVAVLAAGFALVDGGHASTYRGVLAGLSAVVAFIVWHVVQGDRRDSLSRVLGNGFLRWWGRRSYAAYLWHWPLLVIMRVMVPVDAPGGPNPWPRERSCC
>NC_012803.1|WP_010079788.1|2484683_2484983_-|Rho-termination-factor-N-terminal-domain-containing-protein
MAEKKTEKNGAPMGPGTSSIKDPEVYEALRREGASEEKAARIANASARDGRDEVAERGGEAGSYEDWTKDELEKRARELDIEGRSTMTKDELIEALRNH
>NC_012803.1|WP_010079787.1|2485035_2486487_-|CCA-tRNA-nucleotidyltransferase
MDLTTATHALPPGFPADATLPAVVVELGRRFEAAGHELSLVGGPVRDLFLGRPSPDLDFTTDADPDASEAVGAGWADATWDVGRRFGTIGFRKAGWQLEVTTYRAEQYDPASRKPQVAFGDSLEDDLLRRDFTVNAMALRLPALELVDPFGGMRDLHAGVLRTPGTPEDSFSDDPLRMMRAARFASQLGFAVAPEVEQAMTAMAERITIISAERVREELVKLVCGAHPRAGLDLLVRTGLADHILPELPALQLESDEHHRHKDVYAHSLTVLEQAMELEGEYAPSTPDPVLRLAALLHDVGKPATRRFEKGGAVTFRHHETVGAKLVRKRLRALKFDNDTIKAVARLVELHMRFYGYGDAGWTDSAVRRYAHDAGDLLPRLHALTRSDVTTRNRRKAERLAHAYDDLERRIAEIAEAEELAAVRPDLDGQQIMALLGIRPGPVVGRAYSHLLEWRLDEGPHEQAEAEAELRRWWAEQPEAQQG
>NC_012803.1|WP_010079786.1|2486552_2487164_+|NUDIX-hydrolase
MTRPDPSAHRGAPLPSALGAWRRRPQPPLRPVTSAPAGPRSAAAASLPTVEEVSAGGVIVREHDGGLEVAVIARYNRGGRLEWCLPKGHPEGEEDHRQAAVREVEEETGIAGHILEPLGAIDYWFTVARHRVHKTVHHFLLRATGGELTTENDPDHEAVDVAWVRLEDVARRLSFANERRIVDLARQVVDQHFPPGGARGPRP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_012803_1	1.1\|2040713\|16\|NC_012803\|PILER-CR	2040713-2040728	16	NC_012803.1	561606-561621	1	0.938

1. spacer 1.1|2040713|16|NC_012803|PILER-CR matches to position: 561606-561621, mismatch: 1, identity: 0.938

gggacggcagcaggcc	CRISPR spacer
gggccggcagcaggcc	Protospacer
*** ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31065 : 59094

Corynebacterium_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010078638.1\|31065_32319_+\|transposase	IS256-like element ISMlu1 family transposase	A0A220NQR7	Corynebacterium_phage	6.8e-81	43.2
WP_010079746.1\|32351_33143_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_168104827.1\|33373_34237_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010079744.1\|34558_35776_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012750668.1\|35772_36873_-	hypothetical protein	NA	NA	NA	NA
WP_012750669.1\|37024_37624_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012750670.1\|37813_39064_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_041779793.1\|39110_42644_+	relaxase domain-containing protein	V5UQN3	Mycobacterium_phage	8.5e-36	24.3
WP_012750672.1\|42701_43832_+	hypothetical protein	NA	NA	NA	NA
WP_144407139.1\|43878_44520_+	hypothetical protein	NA	NA	NA	NA
WP_012750674.1\|44714_45239_+	hypothetical protein	NA	NA	NA	NA
WP_010078638.1\|45255_46509_-\|transposase	IS256-like element ISMlu1 family transposase	A0A220NQR7	Corynebacterium_phage	6.8e-81	43.2
WP_144407140.1\|46588_46942_+	hypothetical protein	NA	NA	NA	NA
WP_010078638.1\|47075_48329_+\|transposase	IS256-like element ISMlu1 family transposase	A0A220NQR7	Corynebacterium_phage	6.8e-81	43.2
WP_111763571.1\|48389_51149_-	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_082229693.1\|51200_52334_-	hypothetical protein	NA	NA	NA	NA
WP_010079362.1\|52330_53593_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_111763551.1\|54460_54715_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_111763566.1\|55437_56640_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.6e-31	33.8
WP_012750681.1\|57786_59094_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	2.2e-178	71.1

DBSCAN-SWA_2

333350 : 371182

Corynebacterium_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012750723.1\|333350_334676_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.7e-56	33.4
WP_012750724.1\|334855_335383_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_010078638.1\|335660_336914_+\|transposase	IS256-like element ISMlu1 family transposase	A0A220NQR7	Corynebacterium_phage	6.8e-81	43.2
WP_012750725.1\|336946_337450_-	hypothetical protein	NA	NA	NA	NA
WP_160113777.1\|337449_339288_-	hypothetical protein	NA	NA	NA	NA
WP_010079362.1\|339226_340489_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_041779771.1\|340501_342127_-	N-6 DNA methylase	NA	NA	NA	NA
WP_012750726.1\|342327_343290_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA
WP_012750727.1\|343370_344165_-	glutamine amidotransferase	NA	NA	NA	NA
WP_041779772.1\|344291_345299_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_012750729.1\|345360_345933_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010079502.1\|346050_346965_-	hypothetical protein	NA	NA	NA	NA
WP_010079501.1\|346952_347492_-	NUDIX hydrolase family protein	NA	NA	NA	NA
WP_010079500.1\|347548_348676_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_010079499.1\|348801_349125_+	hypothetical protein	NA	NA	NA	NA
WP_012750730.1\|349137_351471_-	hypothetical protein	NA	NA	NA	NA
WP_010079496.1\|351473_352079_-	VTT domain-containing protein	NA	NA	NA	NA
WP_010079495.1\|352075_353122_-	pseudouridine synthase	NA	NA	NA	NA
WP_010079494.1\|353168_354419_-	NTP transferase domain-containing protein	A0A291LA53	Escherichia_phage	8.0e-05	24.7
WP_010079493.1\|354495_355437_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA
WP_010079492.1\|355451_355964_-	VOC family protein	NA	NA	NA	NA
WP_029248257.1\|361126_361585_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_010079488.1\|361690_362758_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_010079487.1\|362989_363496_-	nucleoside deaminase	NA	NA	NA	NA
WP_010079486.1\|363579_364215_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_010079485.1\|364689_365478_+	winged helix-turn-helix transcriptional regulator	W8CYM9	Bacillus_phage	4.9e-08	41.6
WP_010079484.1\|365548_366073_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_010079483.1\|366470_368315_+	phosphoenolpyruvate carboxykinase (GTP)	NA	NA	NA	NA
WP_010079482.1\|368571_368811_+\|transposase	transposase	NA	NA	NA	NA
WP_012750732.1\|368835_370089_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	3.1e-81	43.2
WP_010079480.1\|370300_371182_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-27	30.2

DBSCAN-SWA_3

704293 : 765891

uncultured_virus(14.29%)

protease,holin,transposase,tRNA,integrase

attL 707382:707398|attR 718312:718328

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010079186.1\|704293_705637_+\|transposase	IS256-like element ISMlu11 family transposase	A0A218MNI5	uncultured_virus	2.5e-36	37.6
WP_010079185.1\|705670_707173_+	conjugal transfer protein TraC	NA	NA	NA	NA
WP_010079184.1\|707172_709077_+	TraM recognition domain-containing protein	NA	NA	NA	NA
707382:707398	attL	NA	NA	NA	NA
WP_010079183.1\|709081_709462_+	hypothetical protein	NA	NA	NA	NA
WP_010079181.1\|709730_710579_+	hypothetical protein	NA	NA	NA	NA
WP_010079180.1\|710575_710953_+	hypothetical protein	NA	NA	NA	NA
WP_010079173.1\|714742_715681_+\|integrase	tyrosine-type recombinase/integrase	A0A220NQQ9	Corynebacterium_phage	2.7e-13	32.5
WP_041779801.1\|715872_717153_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_174260671.1\|717101_717503_-	hypothetical protein	NA	NA	NA	NA
WP_010079170.1\|718099_718945_-	alpha/beta hydrolase	NA	NA	NA	NA
718312:718328	attR	NA	NA	NA	NA
WP_029248231.1\|719032_719695_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_174260683.1\|719817_720699_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	5.0e-62	48.4
WP_010079167.1\|720695_721766_+	nucleoside hydrolase	NA	NA	NA	NA
WP_010079166.1\|721846_722680_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.1e-61	45.8
WP_010079165.1\|722812_723736_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_012750785.1\|723877_724384_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_010079162.1\|724508_725729_+	glycosyltransferase	NA	NA	NA	NA
WP_041779776.1\|725909_726794_-	peptidoglycan endopeptidase	C1KFN7	Lactobacillus_virus	1.5e-13	38.1
WP_010079160.1\|727106_728303_+	glycosyltransferase	NA	NA	NA	NA
WP_010079159.1\|728238_728913_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_010079158.1\|729317_730175_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_010079157.1\|730278_731115_+	elongation factor Ts	NA	NA	NA	NA
WP_029248229.1\|731322_732090_+	UMP kinase	NA	NA	NA	NA
WP_010079155.1\|732143_732701_+	ribosome recycling factor	NA	NA	NA	NA
WP_010079154.1\|732726_733563_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_010079153.1\|733612_734212_+	DivIVA domain-containing protein	NA	NA	NA	NA
WP_010079152.1\|734367_735522_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_043055195.1\|735530_736586_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_012750788.1\|736582_738022_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_010079148.1\|738130_738649_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010079147.1\|738707_739355_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_010079146.1\|739468_741085_+	acetyl-CoA carboxylase subunit beta	A0A1B2ITV7	Pike_perch_iridovirus	2.4e-17	62.5
WP_029248227.1\|741122_743222_+	acetyl-CoA carboxylase	NA	NA	NA	NA
WP_012750789.1\|743237_744425_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_010079143.1\|744426_744957_+	MaoC family dehydratase	NA	NA	NA	NA
WP_010079142.1\|744953_745832_+	CoA ester lyase	NA	NA	NA	NA
WP_010079141.1\|746033_746408_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_010079140.1\|746404_748027_+	cation acetate symporter	NA	NA	NA	NA
WP_043055197.1\|748166_749402_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_010079138.1\|749398_750766_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_065423801.1\|750871_752056_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_010079136.1\|752030_752963_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010079135.1\|753085_754912_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_174260672.1\|754955_755705_+	TSUP family transporter	NA	NA	NA	NA
WP_010079133.1\|755834_756422_+	ribosome assembly cofactor RimP	NA	NA	NA	NA
WP_012750790.1\|756423_757410_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_010079132.1\|757452_757794_+	YlxR family protein	NA	NA	NA	NA
WP_012750791.1\|757986_760779_+	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	1.8e-20	29.5
WP_010079129.1\|760859_761306_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_080555869.1\|761319_762285_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_010079127.1\|762281_762650_+	hypothetical protein	NA	NA	NA	NA
WP_010079126.1\|762661_763093_+	hypothetical protein	NA	NA	NA	NA
WP_010079125.1\|763092_764070_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_010079124.1\|764066_764909_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_010079123.1\|764886_765891_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_4

1037859 : 1106355

Tupanvirus(18.75%)

integrase,protease,tRNA,transposase

attL 1030858:1030878|attR 1060401:1060421

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1030858:1030878	attL	NA	NA	NA	NA
WP_010078872.1\|1037859_1039050_-\|integrase	site-specific integrase	A0A1B3AYT2	Gordonia_phage	3.2e-43	35.4
WP_010078871.1\|1039340_1039967_-	oligoribonuclease	A0A1B3B0T8	Gordonia_phage	3.7e-11	27.7
WP_010078870.1\|1040057_1041713_+	polyprenol phosphomannose-dependent alpha 1,6 mannosyltransferase MptB	NA	NA	NA	NA
WP_010078869.1\|1041709_1043437_+	polyprenol phosphomannose-dependent alpha 1,6 mannosyltransferase MptB	NA	NA	NA	NA
WP_010078868.1\|1043433_1044819_+	DUF2029 domain-containing protein	NA	NA	NA	NA
WP_010078867.1\|1044855_1046301_-	DUF2079 domain-containing protein	NA	NA	NA	NA
WP_010078866.1\|1046689_1047241_+	single-stranded DNA-binding protein	A0A222ZFS3	Arthrobacter_phage	8.3e-15	36.0
WP_010078865.1\|1047339_1049022_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	5.3e-44	28.5
WP_010078864.1\|1049208_1050228_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_010078863.1\|1050306_1051017_+	hypothetical protein	NA	NA	NA	NA
WP_010078862.1\|1051054_1052128_-	OsmC family protein	NA	NA	NA	NA
WP_010078861.1\|1052919_1053432_+	hypothetical protein	NA	NA	NA	NA
WP_012750838.1\|1053592_1056199_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	7.6e-42	27.2
WP_010078860.1\|1056374_1056848_+	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_010078858.1\|1057782_1058610_-	DUF1345 domain-containing protein	NA	NA	NA	NA
WP_010078857.1\|1058877_1059771_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010078856.1\|1059970_1061335_+	trigger factor	NA	NA	NA	NA
1060401:1060421	attR	NA	NA	NA	NA
WP_174260673.1\|1061602_1062217_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.2e-41	48.9
WP_002855988.1\|1062258_1062924_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.5e-38	46.9
WP_012750840.1\|1063098_1064397_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-132	56.5
WP_010078853.1\|1064459_1065077_+	DsbA family protein	NA	NA	NA	NA
WP_010078852.1\|1065162_1065498_-	membrane protein	NA	NA	NA	NA
WP_010078851.1\|1065860_1068545_-\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	3.4e-162	37.4
WP_010078850.1\|1068684_1069479_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012750841.1\|1069522_1070272_+	hypothetical protein	NA	NA	NA	NA
WP_010078848.1\|1070390_1072106_+	nitrite/sulfite reductase	NA	NA	NA	NA
WP_010078847.1\|1072102_1072828_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_010078846.1\|1072860_1073796_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_010078845.1\|1073795_1075136_+	sulfate adenylyltransferase	A0A1V0SGC3	Hokovirus	6.3e-24	25.8
WP_010078844.1\|1075167_1075893_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-24	34.6
WP_010078843.1\|1075882_1076806_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_010078842.1\|1076802_1078071_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_012750842.1\|1078067_1079498_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_010078840.1\|1079578_1080214_+	TIGR03085 family protein	NA	NA	NA	NA
WP_010078839.1\|1080492_1083909_+\|tRNA	isoleucine--tRNA ligase	A0A2K9L9X8	Tupanvirus	5.3e-152	32.9
WP_012750843.1\|1083908_1085462_+	dihydrofolate synthase	NA	NA	NA	NA
WP_012750844.1\|1085458_1085959_+	DUF4233 domain-containing protein	NA	NA	NA	NA
WP_012750845.1\|1086034_1086457_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	8.6e-28	48.5
WP_012750846.1\|1086501_1087161_-	vitamin K epoxide reductase family protein	NA	NA	NA	NA
WP_041779780.1\|1087429_1090834_+	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_002853919.1\|1091065_1091371_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_002853915.1\|1091422_1091680_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_012750848.1\|1091849_1093397_+	GTPase ObgE	NA	NA	NA	NA
WP_012750849.1\|1093400_1094606_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.5e-58	41.5
WP_010078834.1\|1094678_1096028_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.5e-89	47.8
WP_010078833.1\|1096107_1096329_+	hypothetical protein	NA	NA	NA	NA
WP_010078832.1\|1096403_1097051_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_002853902.1\|1097047_1097473_+	ribosome silencing factor	NA	NA	NA	NA
WP_010078831.1\|1097486_1098152_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_155116183.1\|1098476_1099061_+	hypothetical protein	NA	NA	NA	NA
WP_010079362.1\|1102691_1103954_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_162497514.1\|1103892_1104276_+	hypothetical protein	NA	NA	NA	NA
WP_010078826.1\|1104849_1104996_+	hypothetical protein	NA	NA	NA	NA
WP_012750851.1\|1105101_1106355_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.9e-81	43.2

DBSCAN-SWA_5

1123940 : 1134748

Corynebacterium_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010078807.1\|1123940_1125284_-\|transposase	IS256-like element ISMlu11 family transposase	A0A218MNI5	uncultured_virus	1.4e-36	38.1
WP_012750854.1\|1125417_1126686_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.3e-177	74.2
WP_012750855.1\|1126800_1127253_-	DUF1931 family protein	NA	NA	NA	NA
WP_012750854.1\|1127366_1128635_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.3e-177	74.2
WP_010078804.1\|1129139_1129385_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.8e-17	54.3
WP_010078803.1\|1129396_1129864_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	4.4e-09	31.7
WP_012750856.1\|1129860_1132038_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.0e-208	52.8
WP_010078801.1\|1132296_1133268_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.3e-137	74.9
WP_012750857.1\|1133707_1134748_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.4e-31	36.0

DBSCAN-SWA_6

2199531 : 2253234

Corynebacterium_phage(30.0%)

integrase,transposase

attL 2197685:2197702|attR 2252535:2252552

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2197685:2197702	attL	NA	NA	NA	NA
WP_012750681.1\|2199531_2200839_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	2.2e-178	71.1
WP_169577800.1\|2202630_2203170_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010080079.1\|2203228_2204656_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.3e-87	40.7
WP_010080078.1\|2204694_2205876_+	ATP-binding protein	NA	NA	NA	NA
WP_010080077.1\|2205933_2206845_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_010080076.1\|2206870_2207863_+	TRIC cation channel family protein	NA	NA	NA	NA
WP_029248293.1\|2207889_2209404_+	DUF1846 family protein	NA	NA	NA	NA
WP_010080074.1\|2209737_2210685_+	DNA (cytosine-5-)-methyltransferase	A0A2I7RTK8	Vibrio_phage	2.8e-34	36.6
WP_010080073.1\|2210728_2211256_-	HNH endonuclease	A0A2P0QEG9	Haloarcula_hispanica_pleomorphic_virus	5.3e-11	48.1
WP_010080072.1\|2213759_2214632_-	CoA transferase	NA	NA	NA	NA
WP_010080071.1\|2214884_2215451_+	DinB family protein	NA	NA	NA	NA
WP_010080070.1\|2215544_2218076_+	HAD-IC family P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	3.2e-21	25.8
WP_010080069.1\|2218082_2218238_-	hypothetical protein	NA	NA	NA	NA
WP_010079481.1\|2218703_2219957_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	3.1e-81	43.2
WP_010080066.1\|2220296_2220749_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_010080065.1\|2220892_2221492_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010080064.1\|2221472_2221865_-	hypothetical protein	NA	NA	NA	NA
WP_010080063.1\|2221985_2222621_-	cobalt transporter	NA	NA	NA	NA
WP_010080062.1\|2222620_2223382_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_010080061.1\|2223378_2224044_-	biotin transporter BioY	NA	NA	NA	NA
WP_010079590.1\|2225369_2226623_+\|transposase	IS256-like element ISMlu1 family transposase	A0A220NQR7	Corynebacterium_phage	6.8e-81	43.2
WP_010080056.1\|2227409_2227775_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012751102.1\|2227896_2228949_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_002855764.1\|2228972_2229401_+	low molecular weight phosphatase family protein	NA	NA	NA	NA
WP_010080054.1\|2229429_2230767_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_010080053.1\|2230865_2231225_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010080052.1\|2231221_2231824_+	cadmium resistance transporter	NA	NA	NA	NA
WP_010080051.1\|2232195_2233065_-	manganese catalase family protein	NA	NA	NA	NA
WP_010080050.1\|2233431_2233821_-	hypothetical protein	NA	NA	NA	NA
WP_012751103.1\|2233820_2235101_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_080555890.1\|2235292_2236366_-\|integrase	tyrosine-type recombinase/integrase	A0A220NQQ9	Corynebacterium_phage	3.1e-13	32.5
WP_010080047.1\|2236479_2237235_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_174260677.1\|2237231_2237732_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_010080043.1\|2238867_2239938_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012751104.1\|2239962_2240838_-	ArgP/LysG family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010080041.1\|2240909_2241524_+	amino acid transporter	NA	NA	NA	NA
WP_012751105.1\|2241561_2242074_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010080039.1\|2242149_2242491_-	hypothetical protein	NA	NA	NA	NA
WP_010080038.1\|2242686_2243718_-	methionine synthase	NA	NA	NA	NA
WP_012751106.1\|2243714_2244761_-	DUF1852 domain-containing protein	NA	NA	NA	NA
WP_010080036.1\|2244757_2246062_-	cystathionine gamma-synthase	A0A0B5JD48	Pandoravirus	2.3e-18	30.0
WP_010080035.1\|2246063_2247413_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_010080034.1\|2247709_2248438_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_080555889.1\|2248576_2249761_+	MFS transporter	NA	NA	NA	NA
WP_010080032.1\|2249806_2250220_+	VOC family protein	NA	NA	NA	NA
WP_012751107.1\|2250267_2250780_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010080030.1\|2250992_2251205_+	hypothetical protein	NA	NA	NA	NA
WP_010080029.1\|2251261_2251585_+	hypothetical protein	NA	NA	NA	NA
WP_010080028.1\|2251563_2251860_+	hypothetical protein	NA	NA	NA	NA
WP_010080027.1\|2251870_2252284_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_010080025.1\|2252919_2253234_+\|transposase	transposase	Q9ETV7	Enterobacteria_phage	6.4e-12	45.0
2252535:2252552	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012803

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection