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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_013173 Desulfomicrobium baculatum DSM 4028, complete sequence 6 crisprs csa3,DEDDh,WYL,cas3 5 1 3 0

Results visualization

1. NC_013173
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013173_1 845358-845432 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013173_2 1785624-1785747 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013173_3 2030180-2030277 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013173_4 2846054-2846144 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013173_5 2926226-2926567 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013173_6 3840722-3840818 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_013173_5 5.7|2926532|18|NC_013173|CRT 2926532-2926549 18 NC_013173.1 2899853-2899870 0 1.0
NC_013173_5 5.2|2926316|18|NC_013173|CRT 2926316-2926333 18 NC_013173.1 2893737-2893754 1 0.944
NC_013173_5 5.2|2926316|18|NC_013173|CRT 2926316-2926333 18 NC_013173.1 2893749-2893766 1 0.944
NC_013173_5 5.2|2926316|18|NC_013173|CRT 2926316-2926333 18 NC_013173.1 2897642-2897659 1 0.944
NC_013173_5 5.2|2926316|18|NC_013173|CRT 2926316-2926333 18 NC_013173.1 2897702-2897719 1 0.944
NC_013173_5 5.4|2926412|18|NC_013173|CRT 2926412-2926429 18 NC_013173.1 2897750-2897767 1 0.944
NC_013173_5 5.4|2926412|18|NC_013173|CRT 2926412-2926429 18 NC_013173.1 2899853-2899870 1 0.944
NC_013173_5 5.6|2926496|18|NC_013173|CRT 2926496-2926513 18 NC_013173.1 2899841-2899858 1 0.944
NC_013173_5 5.7|2926532|18|NC_013173|CRT 2926532-2926549 18 NC_013173.1 2946265-2946282 1 0.944
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NC_013173.1 2893665-2893694 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NC_013173.1 2893677-2893706 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NC_013173.1 2896794-2896823 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NC_013173.1 2897714-2897743 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NC_013173.1 2899841-2899870 2 0.933

1. spacer 5.7|2926532|18|NC_013173|CRT matches to position: 2899853-2899870, mismatch: 0, identity: 1.0

ttgcctccgtcgctgcct	CRISPR spacer
ttgcctccgtcgctgcct	Protospacer
******************

2. spacer 5.2|2926316|18|NC_013173|CRT matches to position: 2893737-2893754, mismatch: 1, identity: 0.944

ctgcctccatcgctgcct	CRISPR spacer
ctgcctctatcgctgcct	Protospacer
*******.**********

3. spacer 5.2|2926316|18|NC_013173|CRT matches to position: 2893749-2893766, mismatch: 1, identity: 0.944

ctgcctccatcgctgcct	CRISPR spacer
ctgcctctatcgctgcct	Protospacer
*******.**********

4. spacer 5.2|2926316|18|NC_013173|CRT matches to position: 2897642-2897659, mismatch: 1, identity: 0.944

ctgcctccatcgctgcct	CRISPR spacer
ctgcctctatcgctgcct	Protospacer
*******.**********

5. spacer 5.2|2926316|18|NC_013173|CRT matches to position: 2897702-2897719, mismatch: 1, identity: 0.944

ctgcctccatcgctgcct	CRISPR spacer
ctgcctctatcgctgcct	Protospacer
*******.**********

6. spacer 5.4|2926412|18|NC_013173|CRT matches to position: 2897750-2897767, mismatch: 1, identity: 0.944

ttgcctccgtcgttgcct	CRISPR spacer
ttgccaccgtcgttgcct	Protospacer
***** ************

7. spacer 5.4|2926412|18|NC_013173|CRT matches to position: 2899853-2899870, mismatch: 1, identity: 0.944

ttgcctccgtcgttgcct	CRISPR spacer
ttgcctccgtcgctgcct	Protospacer
************.*****

8. spacer 5.6|2926496|18|NC_013173|CRT matches to position: 2899841-2899858, mismatch: 1, identity: 0.944

ctgcctccgtcgttgcct	CRISPR spacer
ctgcctctgtcgttgcct	Protospacer
*******.**********

9. spacer 5.7|2926532|18|NC_013173|CRT matches to position: 2946265-2946282, mismatch: 1, identity: 0.944

ttgcctccgtcgctgcct	CRISPR spacer
ttgcctctgtcgctgcct	Protospacer
*******.**********

10. spacer 5.5|2926448|30|NC_013173|CRT matches to position: 2893665-2893694, mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgtctccgtcgctgtctccgtcgctgcct	Protospacer
***.***********.**************

11. spacer 5.5|2926448|30|NC_013173|CRT matches to position: 2893677-2893706, mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgtctccgtcgctgcctctgtcgctgcct	Protospacer
***.***************.**********

12. spacer 5.5|2926448|30|NC_013173|CRT matches to position: 2896794-2896823, mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctctgtcgctacctccgtcgctgcct	Protospacer
*******.******.***************

13. spacer 5.5|2926448|30|NC_013173|CRT matches to position: 2897714-2897743, mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctctgtcgctgcctctgtcgctgcct	Protospacer
*******.***********.**********

14. spacer 5.5|2926448|30|NC_013173|CRT matches to position: 2899841-2899870, mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctctgtcgttgcctccgtcgctgcct	Protospacer
*******.****.*****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694198 Marine virus AFVG_250M320, complete genome 6254-6283 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694198 Marine virus AFVG_250M320, complete genome 6266-6295 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694198 Marine virus AFVG_250M320, complete genome 6278-6307 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694596 Marine virus AFVG_250M321, complete genome 6254-6283 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694596 Marine virus AFVG_250M321, complete genome 6266-6295 2 0.933
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694198 Marine virus AFVG_250M320, complete genome 6290-6319 4 0.867
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694596 Marine virus AFVG_250M321, complete genome 6278-6307 4 0.867
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MK411746 Arthrobacter phage Sonali, complete genome 7895-7924 5 0.833
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 178511-178540 6 0.8
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694198 Marine virus AFVG_250M320, complete genome 6242-6271 7 0.767
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 MN694596 Marine virus AFVG_250M321, complete genome 6242-6271 7 0.767
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NC_009427 Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence 217195-217224 7 0.767
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 91711-91740 7 0.767
NC_013173_5 5.5|2926448|30|NC_013173|CRT 2926448-2926477 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 1271068-1271097 7 0.767

1. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctcggtcgctgcctcggtcgctgcct	Protospacer
******* *********** **********

2. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctcggtcgctgcctcggtcgctgcct	Protospacer
******* *********** **********

3. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctcggtcgctgcctcggtcgctgcct	Protospacer
******* *********** **********

4. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694596 (Marine virus AFVG_250M321, complete genome) position: , mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctcggtcgctgcctcggtcgctgcct	Protospacer
******* *********** **********

5. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694596 (Marine virus AFVG_250M321, complete genome) position: , mismatch: 2, identity: 0.933

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctcggtcgctgcctcggtcgctgcct	Protospacer
******* *********** **********

6. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 4, identity: 0.867

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctcggtcgctgcctcggtcgctggcg	Protospacer
******* *********** ******* * 

7. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694596 (Marine virus AFVG_250M321, complete genome) position: , mismatch: 4, identity: 0.867

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ctgcctcggtcgctgcctcggtcgctggcg	Protospacer
******* *********** ******* * 

8. spacer 5.5|2926448|30|NC_013173|CRT matches to MK411746 (Arthrobacter phage Sonali, complete genome) position: , mismatch: 5, identity: 0.833

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
acgcctccgtcaccgcctccgtcgctgccg	Protospacer
 .*********.*.*************** 

9. spacer 5.5|2926448|30|NC_013173|CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

ctgcct-ccgtcgctgcctccgtcgctgcct	CRISPR spacer
-ggcgtgccgtcgctgccgccgtcgctgtcg	Protospacer
  ** * *********** *********.* 

10. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 7, identity: 0.767

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
cccacggcttcgctgcctcggtcgctgcct	Protospacer
*.  *  * ********** **********

11. spacer 5.5|2926448|30|NC_013173|CRT matches to MN694596 (Marine virus AFVG_250M321, complete genome) position: , mismatch: 7, identity: 0.767

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
cccacggcttcgctgcctcggtcgctgcct	Protospacer
*.  *  * ********** **********

12. spacer 5.5|2926448|30|NC_013173|CRT matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
cggttgccgtcgcagcctccgtcgccgccc	Protospacer
* *.. ******* ***********.***.

13. spacer 5.5|2926448|30|NC_013173|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
cctcctccgtggccgcctccgtcgctttcg	Protospacer
*. ******* **.************ .* 

14. spacer 5.5|2926448|30|NC_013173|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcctccgtcgctgcctccgtcgctgcct	CRISPR spacer
ccgggaccgtcgctgccgccgtcgccgccc	Protospacer
*.*   *********** *******.***.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 75145 : 89754 14 Staphylococcus_phage(40.0%) tRNA NA
DBSCAN-SWA_2 432443 : 443971 8 Bacillus_virus(16.67%) NA NA
DBSCAN-SWA_3 3232705 : 3241799 8 Escherichia_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage