CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013093	Actinosynnema mirum DSM 43827, complete sequence	13 crisprs	cas3,DinG,DEDDh,csa3,cas4,WYL,cas6e	4	5	0	0

Cas Category Instructions

Results visualization

1. NC_013093

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CRISPR-Cas detection and classification

Crispr_ID: NC_013093_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_1

335451-335549

Orphan

Consensus_repeat	Method
CGCAGTCCGGTGGCGGACAGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_1

>merge|NC_013093|1|335451-335549|CRISPRCasFinder
CGCAGTCCGGTGGCGGACAGGCAGGCGGTGGTCCTGCGGGCGGCGGGAAGTCCGGCCCCCAGCAGTCGAACGCGCCGCAGTCCGGTGGCGGACAGCAGA

>NC_013093|1|1|335451-335549|CRISPRCasFinder
CGCAGTCCGGTGGCGGACAGGCAG	GCGGTGGTCCTGCGGGCGGCGGGAAGTCCGGCCCCCAGCAGTCGAACGCGC
CGCAGTCCGGTGGCGGACAGCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_012782947.1\|345652_346438_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NC_013093.1\|WP_012782937.1\|332018_332537_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013093.1\|WP_012782930.1\|326737_327556_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_013093.1\|WP_012782946.1\|344984_345614_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_013093.1\|WP_118945200.1\|338022_339045_+\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|274833
NC_013093.1\|WP_012782935.1\|330649_331321_-\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|214615
NC_013093.1\|WP_012782938.1\|332536_334204_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_013093.1\|WP_012782939.1\|334312_334816_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|376376
NC_013093.1\|WP_012782949.1\|346804_347281_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NC_013093.1\|WP_012782942.1\|339041_339968_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NC_013093.1\|WP_012782936.1\|331442_331889_-\|DUF4442-domain-containing-protein	unknown	unknown	gnl\|CDD\|373120
NC_013093.1\|WP_041837267.1\|329239_329632_-\|excalibur-calcium-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377566
NC_013093.1\|WP_012782950.1\|347277_347730_+\|DUF3180-domain-containing-protein	unknown	unknown	gnl\|CDD\|378650
NC_013093.1\|WP_012782944.1\|340596_342291_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238733
NC_013093.1\|WP_143761040.1\|328148_329108_-\|TIGR03617-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|132656
NC_013093.1\|WP_012782945.1\|342756_344988_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NC_013093.1\|WP_012782931.1\|328006_328162_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_012782943.1\|339984_340533_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NC_013093.1\|WP_012782948.1\|346430_346808_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NC_013093.1\|WP_143761042.1\|329693_330449_-\|excalibur-calcium-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377566

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_012782938.1\|332536_334204_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.2639e-68
NC_013093.1\|WP_012782937.1\|332018_332537_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.78858e-16
NC_013093.1\|WP_012782930.1\|326737_327556_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	7.41893e-100
NC_013093.1\|WP_118945200.1\|338022_339045_+\|zinc-dependent-metalloprotease	gnl\|CDD\|274833	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated. A phylogenetic tree of the DUF2342 family (TIGR03624) consists of two major branches. One of these branches, modeled here, is observed almost entirely to be found in coenzyme F420 biosynthesizing species of the Actinobacterial, Chloroflexi and Archaeal lineages. The few organisms having genes within this family and lacking F420 biosynthesis may either have an undiscovered F420 transporter, or may represent F420-to-FMN revertants. This family includes a Chloroflexus Aurantiacus protein whose crystal structure has been determined (PDB:3CMN_A). This has been annotated as a putative hydrolase, but the support for that assertion is untraceable. There is no cofactor present in the structure.	3.43278e-128
NC_013093.1\|WP_012782935.1\|330649_331321_-\|thermonuclease-family-protein	gnl\|CDD\|214615	smart00318, SNc, Staphylococcal nuclease homologues.	3.80887e-09
NC_013093.1\|WP_012782942.1\|339041_339968_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.2704e-56
NC_013093.1\|WP_012782939.1\|334312_334816_-\|inorganic-diphosphatase	gnl\|CDD\|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	1.60142e-82
NC_013093.1\|WP_012782949.1\|346804_347281_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	1.10079e-55
NC_013093.1\|WP_012782946.1\|344984_345614_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	2.99298e-112
NC_013093.1\|WP_012782936.1\|331442_331889_-\|DUF4442-domain-containing-protein	gnl\|CDD\|373120	pfam14539, DUF4442, Domain of unknown function (DUF4442). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 139 and 165 amino acids in length. There is a conserved PYF sequence motif. There is a single completely conserved residue N that may be functionally important.	3.6786e-18
NC_013093.1\|WP_041837267.1\|329239_329632_-\|excalibur-calcium-binding-domain-containing-protein	gnl\|CDD\|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	5.00098e-20
NC_013093.1\|WP_012782950.1\|347277_347730_+\|DUF3180-domain-containing-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	1.00789e-30
NC_013093.1\|WP_012782944.1\|340596_342291_-\|VWA-domain-containing-protein	gnl\|CDD\|238733	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the members of this subgroup. All members of this subgroup however have a conserved MIDAS motif. .	2.26401e-29
NC_013093.1\|WP_143761040.1\|328148_329108_-\|TIGR03617-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|132656	TIGR03617, F420_MSMEG_2256, probable F420-dependent oxidoreductase, MSMEG_2256 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by MSMEG_2256 from Mycobacterium smegmatis. [Unknown function, Enzymes of unknown specificity].	1.80847e-152
NC_013093.1\|WP_012782945.1\|342756_344988_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_013093.1\|WP_012782947.1\|345652_346438_+\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	2.60028e-104
NC_013093.1\|WP_012782943.1\|339984_340533_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.78575e-92
NC_013093.1\|WP_012782948.1\|346430_346808_+\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	6.98149e-44
NC_013093.1\|WP_143761042.1\|329693_330449_-\|excalibur-calcium-binding-domain-containing-protein	gnl\|CDD\|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	7.32852e-17

>NC_013093.1|WP_012782939.1|334312_334816_-|inorganic-diphosphatase
MEFDVTIEIPKGVRNKYEMDHKTGRIRLDRTLFTATQYPADYGFVDDTLGEDGDPLDALVLVQEPTFPGCLIRCRAIGMFRMTDEKGGDDKLLCVPSDDPRSEHLRDIHHLSEFYRLEIQHFFEVYKDLEPGKSVEGATWVGRTEAEAEIVRSYQRLKDAVARGEEH
>NC_013093.1|WP_012782938.1|332536_334204_+|MFS-transporter
MSETTTQAGATPPGAALLTHRQILTILSGLLMGMFLAALDQMIVATAMKTIADHLNGQTIQAWATTAYLITSTITTPLYGKLSDIYGRKPMYLTAISMFLVGSLLCGIANSMYELAAFRAVQGLGAGGLMSLAFAILADITSPRERSRYAGYFMAVFGVASVAGPVVGGLFAGMDHFLGFAGWRWVFLVNVPIALAALAVVAKVLNIPHQRVDHRVDFLGAITLTVGLVPLLIVAEQGREWGWGSATAIAMYVVGVLGLVAFVWAEKRAGDEALLPLRLFRKQTFALGNTINFVLGAGMFGGMVSIPLYLQIVQGHSATTAGLMMLPMTLGIMTAAGTSGKITSKTGRYKVFPVVGFAVMTASLFLFSTVGVDTATWQPMALMFTMGLGLGLCMQTLLIAIQNDAEPRDMGVATSSATFFRQIGGTVGAAVFLSVLFSTVGDKIGEALRSAMGTDAFRAALARPENQAFAQQLQSGGASADLNNTEFLSKLDPVLARPFLEGFSSAIDTVFFVGALVTLVGFAIVWFLREVPLSDRSGLERSKDEADAASTIALH
>NC_013093.1|WP_012782937.1|332018_332537_+|MarR-family-transcriptional-regulator
MTTPEDAHGGGRSDEALADRFGTALVRLNKMHAALSASLSKAGIDKASFVLLANLAQMGPSRASALAEAVFSDPSTVSRQVAGLVKDGLVERRADPDDGRASVLAVTDNGLSLLHERRRVRNAALARLFSDWSTHDWTTFVEHFERFVEGYEKALPDFIAEGGQGPRSEGEK
>NC_013093.1|WP_012782936.1|331442_331889_-|DUF4442-domain-containing-protein
MDPSLVADAMRKSVPWVQTNGVEFTEVGVDRVVAALPDRPESRNHVGGPHAAMLFGVGETASGAVVMAAFGGHLDRATPLVARAEIAYRKLALGPLTAEAVLERPAADVVAELEGGQRPEFPVRVSVRDAEGVVTTELVVTWTLKPQR
>NC_013093.1|WP_012782935.1|330649_331321_-|thermonuclease-family-protein
MESTALVRRTPLRLLLLVPALLLTACAAQPLAAPAVPAPAAEDAAPDAAERWDRSGAWSTPSPAQPDPADLAPARASGVVDARTIAVAGGGSVRLLGLAEPGACWSRAAADFLGSLVAQKDLALDGASVRLPGGTDLSAQLVSQGMARAEPDAASTLTRAEAAARKAGLGLWGAPCGGSDSVVTTPAPTTRALARCTANTSTTPAGLPGSPVLDHDTDGVACA
>NC_013093.1|WP_143761042.1|329693_330449_-|excalibur-calcium-binding-domain-containing-protein
MKKTGTVAGGIFVALILIGALGDPPPADSTRAAATASATATTTSTTTTTTTAPTTTTPPPVTVAEVADGRSVAVAGGRVLVLAGLAQPGECWAQQAVDFLKSTVAGKELAQVGGQLLLPDGSDVSLLALSQGVAKALPEASAAHNAAQAAAQKAGLGLWGAPCGGSDAKPAPTTTTQAPAPQPNPQPNPQPQPNPQPNPQPAPQPEPQPAPSAYYANCAAVKAAGAAPLYAGSPGYSSKLDRDGDGVACEK
>NC_013093.1|WP_041837267.1|329239_329632_-|excalibur-calcium-binding-domain-containing-protein
MVVLTALVLAGCEGSAPAGGQVSTSPSPTTTTTSATTTTSSPAPVTTTSTTTTTTTPPPAVAPPPQPNPQPAPNPQPAPNPQPAPEPKPAPSAYYKNCAEARAAGAAPLHAGEPGYRTGLDRDGDGVACE
>NC_013093.1|WP_143761040.1|328148_329108_-|TIGR03617-family-F420-dependent-LLM-class-oxidoreductase
MVDQVEVEYTPTTVVEAARAAEEAGIDGFWVAETRHDPFVALGRVADRVERVGLGTAIAVAFARNPMSTAVQANDLQLLSRGRFRLGLGSQVEQHITKRFGMPWSRPAARMREYVLAMRAIWESWATGERPRFRGEFSTHTLMTPFFDPGPNPFGPPEVWLAGVGERMTEVAGEVADGFLCHAFTTERYLREVTLPALERGLAKSGRTLEGFGVSGPSMVVTDDASAAAVRRQIAFYGSTPAYRPVLDLHGWGELHEELHRLSRRGLWAEMDAAVPDEVLGAFAVTGTPAEAAAEVVARYGDVVTRIAAPVLRADLRSG
>NC_013093.1|WP_012782931.1|328006_328162_+|hypothetical-protein
MLAMVVVTLLALPLVFVAQRIGRRRWNRRVDVARVPESALFPHRVPSLSRT
>NC_013093.1|WP_012782930.1|326737_327556_-|ABC-transporter-ATP-binding-protein
MSQGDALLTGEALVLAHHDRAVVEGVSLELRAGEVTALVGPNGSGKSTVLRSLARLHKPREGGVRLGERQVWGRAALSGKEFARNVTLLTQHRPTPSGVSVRDVVSYGRHPHRAGWRGVDAGGAAAVERAMELTGVTPMAGRGVDELSGGELQRVWLASCLAQETSVLLLDEPTNHLDLRYQVEVLDVVRDLADDHGVAVGVVLHDLDHAGVVADEVVLLCDGRVVASGAVRDVLTADHLTSAYGVEVQVVDDPVTGAPHCRPLGKRTQRRP
>NC_013093.1|WP_118945200.1|338022_339045_+|zinc-dependent-metalloprotease
MNSVTQQDRAASIDWEVAVSTAARLVRPGPVVPRAEADVAVGRLRELAVDAEAHVRELTGLGHGLPLRAGEVVDRPGWVRAAAQGLSVLTDSAAPRQGGVLSGVVSGTAGVQAGVVLAFLSSRVLGQYDPFSGDGRLLLVAPNIVGTQRALNVPGEDFSMWVCLHECTHRLQFTGVPWLAGHFSGLVTELLESMDNESPRLRDLPKRLREADGPVGLIELFQTPEQRAALDRLIAVSTLLEGHADHVMDAVGPDVVPSVAVIRRRFTDRRSGGGLLDRVLRSLLGVEAKVRQYAEGAAFTRHVVDEVGMTGFNAVWSAPEALPTRAEIADPAAWLRRVAP
>NC_013093.1|WP_012782942.1|339041_339968_+|tRNA-lysidine(34)-synthetase-TilS
MTPAANGPLSRVRTAVRRFLAEHRPARVAVAVSGGADSLALAACTAALTSGARAVVVDHGLQEGSAEVAERAARTCAELGLDAQVRRVEVTGGGGPEAAARRARYAALRPERGLVLLGHTLDDQAETVLLGLGRGSGPRSIAGMRELDAPWGRPLLGVSRADTEGACAELGLSPWSDPHNADPAFTRVRLRREVLPLLEEVLQGGVARALARTAAQLREDNDALDDLADAFAGDRGAVADLAPLPVALRRRVLRRWLLAEGVPELSDSHLRAVDALVRTGAGGGGVWVPGGFVVRRARGRLRVDPVQA
>NC_013093.1|WP_012782943.1|339984_340533_+|hypoxanthine-phosphoribosyltransferase
MYDGDIASVLLSEQEISDKVGELARQVAADYPAGGDDLVLITVLKGAVMFTSDLARALPVPVQLEFMAVSSYGSSTSSSGVVRILKDLDRDIADRDVLIVEDIIDSGLTLSWLLKNLASRKPRSMEVCTLLRKPDAVKVDVPVKYVGFDIPNEFVVGYGLDYAERYRDLPYIGKLDPKVYSG
>NC_013093.1|WP_012782944.1|340596_342291_-|VWA-domain-containing-protein
MSARSERPGRARRIALPLGALVGVLAAGATAVVALKATSGPDCTGTLPLKVATTPAAEAVVRGAADDYQATQPVVDGRCVQVQVEARTAADVAHELPTARINPPVMWVPDSTMWAEEAQRQSASLGAEAPALEVGEPLAGSPLVIAGPAEKLRGLGWPSTSVAWASVLAPGVEAAVSDPTTSTEGLATLAVIRARLGNADGTPNQELIGSLMRIGRNAVTVRDSFNRVGQDEGSAPLFTASEQAVLAANRAAGGLRVAASYPAEGTMLLDYPVVRIKRASDQPGTGVAASGFEQALRSAKTRERFVDAGFRTPDGQAAAGLSAERDGVGGDAVNAMPKPSPAEVSELLGTWGAVSLDSRMLAVLDVSGSMTELMGNGQTRMAAASEAALTALGMLPDTSEIGLWAFSTNKRPPNDWVELVPLGPLGEVLGSAPRRTRLQQGAKGLAALVGGGTALNDTTLAAFRRMQSTYDPEKINSVVLITDGRNDDYASITTAQLLQALESESDPARPIPLIMVGLGQEADMEALQEISSATGGKAYQALEAADIRSVLLDAISQRRCRPNC
>NC_013093.1|WP_012782945.1|342756_344988_+|ATP-dependent-zinc-metalloprotease-FtsH
MDRKRLLRNPLLWIVAVVLLFYVFSVLFDEDRNYHQVTTSQALQQVRDGKVKEATIEDKEQKLKLVLNDGSTFENHGLLMASYPASATDEVFTLVDQAGNKPQVETKVTQDSLLTQMLLYLVPLGLLLLLLMWMMNNAQGGGNRVLNFGKSKAKQLSKDMPKTTFADVAGAEEAVEELYEIKDFLQNPGRYQALGAKIPKGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKQNAPCIIFVDEIDAVGRHRGAGMGGGHDEREQTLNQLLVEMDGFDSRGGIILIAATNRPDILDPALLRPGRFDRQIPVSAPDLKGRKQILRVHAKGKPLAPDTDLDGLAKRTVGFSGADLANVINEAALLTARQNGTVIDGSALEESVDRVIGGPARKSRIISEKEKKITAYHEAGHALAAWAMPDIDPVYKVTILARGRTGGHTLSVPEEDKDLMTRSEMIARLVFALGGRSAEELVFHEPTTGASNDIEQATKIARAMVTEYGMSSRLGAVKYGQEQGEPFLGRNAGRQADYSLEVAHEIDEEVRKLIEAAHTEAYEVLNTYRDVLDDLTLELIDKETLHQKDLERIFAGVEKRPRITQFNDFGNRIPSTKPPVKTPGELARERGEPWPPVVEDQVEAEPAALPAPAPETPQGPAQPQQVPAGANGVQHPPQQVTPGSGPPNYGAPPGWTPATVPGSGGQPTTPAWRPDPADADKRNFDSDPDNRK
>NC_013093.1|WP_012782946.1|344984_345614_+|GTP-cyclohydrolase-I-FolE
MIEFDNAGLPSNGEAGVAAKRPFDQERAEAAVRELLLACGEDPEREGLRETPARVARAYREMFAGLFTEPDGVLAKTFDESHEELVLVTEIPVYSFCEHHLLPFHGVAHVGYIPNEQGRVTGLSKLARLVDLYAKRPQVQERLTSQVADALVRRLEPRGVIVVVEAEHLCMGMRGVRKPGSRTTTSAVRGLLRTSASSRAEAISLIKGR
>NC_013093.1|WP_012782947.1|345652_346438_+|dihydropteroate-synthase
MGVLNVTADSFSDGGRYLGLADAVAHGLALRDQGAHLVDVGGESTRPGAERVPSDLEVARTSHVIAALSAQGVVTSVDTTRSEVAVAALEAGVSVVNDVSGGLADPDMLRVVAEADVPYVVMHWRGHSAGMDRLAEYSDVVREVRDELSARVDAALAAGVRAENVVVDPGLGFAKRAEHNWQLLNRLDELIDLGFPVLVGASRKRFLGALLGERPPAGREDATAAVSALAAFNGAWGVRVHDVPRSVDAVAVAGAWRAGRG
>NC_013093.1|WP_012782948.1|346430_346808_+|dihydroneopterin-aldolase
MAEATGSGDRIELRGLTVRAHHGVFEHEKRDGQDFLVDVVVWLDLTRAAATDDLRETLHYGELAERVAEVVAGGPHDLIETVAGRAADVVMADGRVTATEVTVHKPHAPIPLIFADVAVTVRRTR
>NC_013093.1|WP_012782949.1|346804_347281_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MSRAVLSLGSNLGDRLAHLRSAVDGFRPWLLAASPVYETAPWGVTDQDDFLNAVLLVEGDLDEWGWLRRGQELERAAGRVRERRWGPRTLDVDVVAVDDVRSEDPELLLPHPGAHERATVLAPWLDVDPDAVLPGHGRVADLLSGVDLSGVRRLEVAL
>NC_013093.1|WP_012782950.1|347277_347730_+|DUF3180-domain-containing-protein
MTFTKGRDLLAAGLGSAALVFLLLKLSYSGLPPLPRLAGLVLLVIAAIDLGLAVSLRARILRKPGAEPVQPLTAARAVALAKASSVLGAIMAGAWGAVLLHVAPARGRFPAADNDLTSAVVGLVCAAALTASGLWLERCCRTPDEPERRA

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Crispr_ID: NC_013093_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_2

502528-502648

Orphan

Consensus_repeat	Method
TGCCGTCGAGCAGGTCGTCCAGGTC	PILER-CR

2 spacers

The CRISPR arrays of NC_013093_2

>merge|NC_013093|2|502528-502648|PILER-CR
TGCCGCCGAGCAGGTCGTCCACGTCCACCGCGTGGGTGTGGTCGAGCACGTTGTCGAACAGGTCGTCCAGGTCGGACGGGTCGAGCACGACCGTGGTGCCGTCGAGCAGGTCTTCCAGGTC

>NC_013093|2|1|502528-502648|PILER-CR
TGCCGCCGAGCAGGTCGTCCACGTC	CACCGCGTGGGTGTGGTCGAGCACGTT
GTCGAACAGGTCGTCCAGGTCGGAC	GGGTCGAGCACGACCGTGGTGCC
GTCGAGCAGGTCTTCCAGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_012783087.1\|494630_495632_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NC_013093.1\|WP_012783095.1\|505640_507044_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NC_013093.1\|WP_012783083.1\|490564_492217_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NC_013093.1\|WP_012783091.1\|500490_501099_+\|ATP/GTP-binding-protein	unknown	unknown	gnl\|CDD\|225138
NC_013093.1\|WP_012783089.1\|499316_499736_+\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|224929
NC_013093.1\|WP_049796728.1\|510402_511458_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NC_013093.1\|WP_012783094.1\|505349_505535_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_012783082.1\|489426_490365_+\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|235084
NC_013093.1\|WP_118948155.1\|507778_508237_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NC_013093.1\|WP_012783100.1\|510137_510401_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NC_013093.1\|WP_012783098.1\|508233_508659_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NC_013093.1\|WP_041836526.1\|499763_500510_+\|DUF742-domain-containing-protein	unknown	unknown	gnl\|CDD\|283084
NC_013093.1\|WP_012783085.1\|492928_493387_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_012783102.1\|511562_512024_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013093.1\|WP_012783084.1\|492342_492873_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_041836525.1\|495972_499320_+\|nitrate--and-nitrite-sensing-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989
NC_013093.1\|WP_012783096.1\|507284_507758_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_013093.1\|WP_012783099.1\|509100_509775_-\|transglycosylase-family-protein	unknown	unknown	gnl\|CDD\|369056
NC_013093.1\|WP_012783086.1\|493477_494566_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_013093.1\|WP_012783093.1\|503040_505284_-\|helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|379300

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_012783087.1\|494630_495632_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	7.5023e-19
NC_013093.1\|WP_012783095.1\|505640_507044_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	2.14007e-179
NC_013093.1\|WP_012783083.1\|490564_492217_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	3.75388e-112
NC_013093.1\|WP_012783091.1\|500490_501099_+\|ATP/GTP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	1.43736e-45
NC_013093.1\|WP_012783089.1\|499316_499736_+\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|224929	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only].	2.60504e-25
NC_013093.1\|WP_049796728.1\|510402_511458_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	1.29977e-179
NC_013093.1\|WP_012783082.1\|489426_490365_+\|o-succinylbenzoate-synthase	gnl\|CDD\|235084	PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional.	2.04571e-155
NC_013093.1\|WP_118948155.1\|507778_508237_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	2.50467e-56
NC_013093.1\|WP_012783100.1\|510137_510401_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	1.69348e-09
NC_013093.1\|WP_012783098.1\|508233_508659_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	2.34521e-40
NC_013093.1\|WP_041836526.1\|499763_500510_+\|DUF742-domain-containing-protein	gnl\|CDD\|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	5.10944e-33
NC_013093.1\|WP_012783102.1\|511562_512024_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.51561e-13
NC_013093.1\|WP_041836525.1\|495972_499320_+\|nitrate--and-nitrite-sensing-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	1.23103e-35
NC_013093.1\|WP_012783096.1\|507284_507758_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	5.0278e-79
NC_013093.1\|WP_012783099.1\|509100_509775_-\|transglycosylase-family-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	7.27233e-33
NC_013093.1\|WP_012783086.1\|493477_494566_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.628e-05
NC_013093.1\|WP_012783093.1\|503040_505284_-\|helicase-associated-domain-containing-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	2.56099e-38

>NC_013093.1|WP_012783091.1|500490_501099_+|ATP/GTP-binding-protein
MGFAGSSPNAAAEGARKPTTSAKIVVAGGFGVGKTTFVGSVSEIVPLTTEAVMTEASAGVDDLSATPNKVTTTVAMDFGRVSLDSDLILYLFGTPGQHRFWFMWDDLVRGAIGAIVLVDTRRLADAFASIDFFDDRQLPYVVGVNCFDGLLHHRIEDVREALTIDQSVPIVTCDARNRQSTKQTLITLVEHAMRQWMSVRAG
>NC_013093.1|WP_041836526.1|499763_500510_+|DUF742-domain-containing-protein
MAERSGADGRAFGRNFNYQEWATGGFRFVEPDAHPTQDEEAEDAPSPWAEQARRARDEGTEQGQGDMAQREVEDSSYDYDDVPNRFDIDGYGSGLFGGPGADLFGAHGLPESVPEQLPYTTGPQPVVRQEEHPAAESGSLVRPYTRTGGRTRPDYDLAIEALISTSERGLERDAAVLPEHRSICGLCTDTRSVAEVAALLRLPLGVARVLIGDMASMGLVLIHQGGMVVGDKPSIDFLERVLSGLRRL
>NC_013093.1|WP_012783089.1|499316_499736_+|roadblock/LC7-domain-containing-protein
MTTAAQPGSFGWLITDFVRRVPGVAHSVVVSADGLLLAGSQGLPRDRAEQLSAVASGLVSLTTGAARCFEAGTVNQTVVEMERGYLFLMSISDGSCLAVLAAPNCDIGLVAYEMTLLVERVGQQLTPELRAQLQGVVRR
>NC_013093.1|WP_041836525.1|495972_499320_+|nitrate--and-nitrite-sensing-domain-containing-protein
MARRERGSGQSGVGKPPRTESPEMGDGLAALRDGTVTESTGTGLTTGVRQGEARTASWRLQNWRLPTKLGAVLLIPTVAALALGGLRVQSDLANATQFSRLANQVQLETAVADLVHQLQRERDLSTWYVASSKQIESVALDRQLVRVSDAVETLKSKIIDLSGDLAPETVERFRGTAEQLTRLNSLRSAVRETQYPSDAVLRVYSESVESLLDLGEQAIGGIDDPELARLHLATNAMARIKEQESQKRGILFDVFQRGSFAANQERALLAVNAELDAARNDFRKSATPDQAKIYDDTVTGLIIDTANNMQETALNLAGTTSGFGDISPKGWDVSSTLTVNKTRQVEVMLIEQLQRLSDERTGEARAAAFYDSGVVLGALLMALVMALFVARSILNPLRLLRRTALDVADKGLPEAVEKILADPNPQEAAKTAIAPVPITTREEVGQVARAFDAVHGEAVRLAAEQAMLRDNVNAMFVNLSRRSQALVERQLNLIDRLEQDEQDPDQLASLFELDHLATRMRRNSENLLMLSGTDLSRRLTRPVPVAEVLGAAVSEVEQYARVQVGQTPELTVQGRAVNDLVHLIAELLDNATAFSDPVTKVTVRTARTRKGELAIEIQDRGVGMSDQDLRDANERLANPPDVDVAVSRRMGLYVVARLAKRHDVKVRLRGNEDIEGGTTALVTVPEALVTSAGQTAHPMGADLIGSPSAPAPSAFPSPNTAQRASGIAGAFGGGNGTAGVTSRHDEESSYPAVSFMSTDVDADATRAPYRAEVPQETSAEISQASWLPMVEEQPPAVARDAQNEPTGTFGSPTLFTAYEDRDAPQADHEHGYQTTQFPAVDDSANAFAPFAAPLPEPEPEPEPEPEPEPVVFQRSSAPRASAPARPVVDDTPTERLPIYEAVLSQWFQSVGSETSAATTQAVPPAPAAPAPRPARQDVQPEPQREEAPLPTRKPRPVSEQAQEAAAPSSAIENGLPKRQPGSQSNMSKRTLETSRVSEPEAVQAEPAAKASPASVWQSPADEGWQAAQSLLSSTPDATTQAGLPKRKPKAQLVPGSAAPLAGATQQPQQPPLPPRSADVIRGRMSSLQQGVRRGRHALIDAYAGDMSSRQDEEQE
>NC_013093.1|WP_012783087.1|494630_495632_-|ABC-transporter-substrate-binding-protein
MPTPARVLRRAAALIVCATTLSACGLLPGTSGDETPALERNTLRIGVLPVVDVAPLKLALNDKLFERAGLQVQLVDVSSEDEGLKQLDSTLDITWGSHVKLFSKVAEGTELQIQGEAYQAGANSMALVTTNPQYDSAEKIKARSANRKPKIAVDSTKDLGALTTTSVLQTAGIQSSGVEMVTMPFSQMVNDLRADKVQAAWMIEPYITKAQREVGARVITDTATGPTQDFPMSGYASSKKFADANPQTLKLFRSVLQEAQQAASDDKLAVQDVLTSYIDVDQQTAALVSIGTFPVSLNSVRLQRVADMMDTADVLVGKLDVQVLLPEGTASTG
>NC_013093.1|WP_012783086.1|493477_494566_+|hypothetical-protein
MTTPPEGPQDPWQPSWRPEPERRPEHSGPAVTPPQRAAQPVFPSQDAPWGAPTGHDRSPDPWPAARPAARPGAADPGPGPRHDPRTEPETPPTGLAQFGFTGEPADRSAFTVNGRISRKSEFAGQRDPARFPDFHRDERSAPPPSDDSLGYAVLVQPLGPGSAPAPEVRYRQPWQPTHQEQHPHGPVPAHGTGLARRTKIVLALAAVVPLAAIVALSFGGEDRRTAVAGAEAGDCLKVNEVSRDGADVEMVDCAAGDAAYRVAVNLPETDRCPPGDYDEYIRGGAGNRGFRLCLMLNATDGDCFKEEGGIAASKTTKVRCGSGATYKVAKAHSGTVDELVCEFDENPRVYPTPPTTLCITDP
>NC_013093.1|WP_012783085.1|492928_493387_+|hypothetical-protein
MRESGWLIGAAALVLAGGWLLAAPTAGEDLPSAGDCASFVGTADAPGYAALDCGAEQANARVLGVADVADACPGSDARPTAGGAVCLGPNLVAGHCYRDDLQMGLVRVTCDTFGAVKVLKVANSTFPCEEGDLLTLGDRSIAFCVTRAADSR
>NC_013093.1|WP_012783084.1|492342_492873_+|hypothetical-protein
MSSDDARNDTGGKPAPNRRVLAIAAVAVVVLAVAGYAVHVLTGPGSSAGECVRITGADGDSLAVTPDDCDADLANFRVGKVVDGADAPCPEEGVYTEARGQGSSTLCLLPNMVEGACYGPDDRGFGGLVKSACAGEATIKVTKVIEGSTDTSGCPDGAGMSYPEPPITFCVVPADL
>NC_013093.1|WP_012783083.1|490564_492217_-|DEAD/DEAH-box-helicase
MTDGPLIVQSDKTLLLEVDHPAADEARAAIAPFAELERAPEHVHTYRVTPLALWNARAAGHDAEQVVDALVRFSRYPVPQPLLVDVVDVMGRYGRLQLSTHPAHGLVLQSLDRAVLEEVLRHKKIKPMFGARIDDDTVVVHASERGRLKQLLLKVGWPAEDLAGYVDGEAHPIELVEEGWQLRDYQRLAAQAFRAGGSGVVVLPCGAGKTMVGAAAMAEAGATTLILVTNTVAGRQWKRELVARTSLTEDEIGEYSGERKEIRPVTIATYQVITRKSKGEYKHLELFDSRDWGLIVYDEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGQEGEVFSLIGPKRFDVPWRDIEAQGWIAPAECTEVRVTLTDAERLGYATAEPEERYKLCSTARTKLPVVKAVLDKHPGEPALVIGAYLDQLEELGEALGAPVVQGATKNKEREELFDAFRRGELSTLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKADGRQAHFYSVVSRDTLDTDYAAHRQRFLAEQGYAYRIVDADDLLGPKIG
>NC_013093.1|WP_012783082.1|489426_490365_+|o-succinylbenzoate-synthase
MLVYSIPMRTRFRGITVREGVLLEGERGWGEFCAFLDYSDAECAPWLACAVEAAEEGWPAPVRERVAVNCTVPVVSPERAHALVSASGCGTAKVKVADPGAPLAEDLERVAAVRDALGPGGAVRVDANAAWDVDTAVTAIRALDRAAGGLEYVEQPCRTVEELAAVRRRVDVRIAADESIRRAEDPLRVAVAGAADVAVIKVAPLGGVRRALRVAEACGLPCVVSSAVETSVGMAAGLALAGALPELDFACGLGTLPLLDGDVATASLVPVDGWLPVPTAPPVPDRAERFAADPETTLRWRERLARVGRPRG
>NC_013093.1|WP_012783093.1|503040_505284_-|helicase-associated-domain-containing-protein
MSGTTLADWLRAQDDKVLVALLRARPDLATPPPADTSVLATRLGSRSSVARACEDLDSLALTALEALLVLDADRAPVPISALRALFKPHRVTVARPVALLRSRGLLWGPDSALRVPASARDAVSPFPCGLGRSAPSLADVDLSGLDEGESRVLAALATGRPTGQTKDAAHVVSLERATSPIQKLLARGLLVRRDQSTVELPREVGLAVRGDRPLGDVVAEEPALRTQALDPGRVDGTGAGAVLELVRHVEGLVGSWSQEPPAVLRSGGLGVRELRRVAKDLDVTEERAALLVELAVAAGLVGDSAGLEPEWVPTAQADPWLAAGPEQRWAVLAQAWLELGRLPGLVGGRDDRDRPLNPLAPELARAAAPKDRRRVLEALAELEPGTAVPDVAGLAATLAWRAPRRGGRLRDELVRWTVEEGTALGVLALGAATGAGRALLGEGAAAAAKRLADALPDPVDHVLVQADLTVVAPGRLEPELAGEMALVADVESAGHATVYRVDERTVRRALDSGRTADDLHELFRSRSRTPVPQSLTYLVDDTARKHGRLRGGPAGSFLRCDDPVLVAEVLAHPASDALELRRIAPTVLVSPLPLAEVLAGLRGAGFAPVAEDAGGQVVDLRAGGRRITGRGRRKSPPPPTASPEQLAELVRQLRAGDRAATTTAGARVTVPGNLGSGPSVTLAVLQQAAREGGEVLVDFVDGHGTAASRVIKPQVVGGGVLEGVDVGYGEVRRFPLHRITSVAIVHK
>NC_013093.1|WP_012783094.1|505349_505535_+|hypothetical-protein
MAKARPERIDPQWPEAPAGHKHAVSELASDVQGALSPFGGTAFPQPLEELGYHHPSTTINR
>NC_013093.1|WP_012783095.1|505640_507044_+|NAD-dependent-malic-enzyme
MPVPGPGYSITVRLEAPPSASAAGDLTSAVGRAGGVITAFDVVESHNDRVIIDLTCNALSANHAKDITDTLEQLPGIVVRKVSDRTFLVHLGGKIEISSKVPLRNRDDLSRAYTPGVARVCQAIAENPEDARRLTIKRNTVAVVTDGSAVLGLGNLGPAAALPVMEGKAALFKKFAGVDAWPVCLDTQDTEEIIRAVELIAPVYGGINLEDIAAPRCFEIEARLREKLDIPVFHDDQHGTAIVVVGALRNALRVVGKDISECKIVVCGVGAAGSAIIRLLLKQTPGDVVAVDVDGIVHRDRPGMDPNLASVAESTNKENVSGRLHDALVGADVFIGVSAPNLFGAEQVATMNSDAIVFALANPDPEIDPMEAQKHAAVVATGRSDFPNQINNVLAFPGVFRGLLDANANTITDEMLLAAATAIADVVDGDRLNASFIVPSVFDTTVAPAVAEAVRKVASELKAAERA
>NC_013093.1|WP_012783096.1|507284_507758_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQFTHIDASGAARMVDVTDKPATARTAVATGVLRTTAEVVRLLAADDLPKGDALATARIAGIMAAKRTSELVPLCHPIALSGVKVDLELGEAEVRVTATVRTADRTGVEMEALTAVSVAGLALHDMVKAVDPAASMDAVRVERKEGGKTGLWERPA
>NC_013093.1|WP_118948155.1|507778_508237_+|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MVTASNRASAGVYADRGGPLIVGWLRERGYDVPDPAVVPDGEPVAEALRAAVADGVAVVITTGGTGISPTDRTPEATRSVLDFEVPGLADAIRTSGWPAVPGSVLSRGVAGVAGRTLVVNLPGSTGGVKDGLAVLDAVLEHAVEQVGGGDHR
>NC_013093.1|WP_012783098.1|508233_508659_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MTEVLRAAVTEDPISVDEHAKLVEHASAGAVVTFSGVVRDHDHGRSVRELEYHGHPSAGDVVAEVVSDVAGRFEGVRAVAVSHRVGPLAIGDVALAVAVSAAHRGAAFAVCSELVDEVKRRLPVWKRQVFADGSDEWVNCP
>NC_013093.1|WP_012783099.1|509100_509775_-|transglycosylase-family-protein
MAVYRGKHRFQSLRANAAVRGIAKVAVAGVIVGAPLAMAGTASAQGSGVNWDAVAACESGGNWSINTGNGYYGGLQFSPSTWSSHGGSGMANQASRAEQIRVAENVMKTQGIGAWPVCGPKGLGGGAAPARTAPAPQQAAPAPQKQSTPQKRATAPVQQQAAPVVVALPQSNPNGDYEIKAGDTLSKIASELKVEGGWAKLHELNKQYIPNADLIMSGMKIATK
>NC_013093.1|WP_012783100.1|510137_510401_-|MoaD/ThiS-family-protein
MVELTVRYFAGARAAAGVPAETVAVPGAGSGTTVAHVLDVVRAKHGANLTRVLAASSFLLDGIAVRDHAAAVSAGAELDVLPPFAGG
>NC_013093.1|WP_049796728.1|510402_511458_-|GTP-3',8-cyclase-MoaA
MTAVDLGLPVVRSAPHVTARPESPSLIDRFGRVATDLRVSLTDKCNLRCTYCMPAEGLDWLRGPELLSDEELVRVIGIAVTRLGVTDVRFTGGEPLLRRGLEDVLAATTALEPRPRTSMTTNGISLATRAAGLKAAGLDRVNVSLDTLDRERFRELTRRDRLPDVLAGLAAAREAGLEPVKINSVLMRGVNDDEAVALVEFAVEHGYQLRFIEQMPLDPQHGWDRSEMVTAQEILDALGTRFALAPVLARGAAPAERWVVDGGPSVVGVIAAVTRPFCAACDRTRLTADGQVRNCLFSGAETDLRALLRSGASDEEVAERWRGNAWAKAEGHGIDGDGFAQPDRPMSAIGG
>NC_013093.1|WP_012783102.1|511562_512024_+|MarR-family-transcriptional-regulator
MSEHDVPAEELERFSAHARETGALTALLHGRAAERMGLSTTDEKCLGLALAGDVPVTAGRMAELSGLSTGAVTGVIDRLERAGYVRRVRDPHDRRKVLVEVSGPRAGEVAVLFREAAEVLEAALRRFTPEERAVVERYQLALLEAVRGRVADA

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Crispr_ID: NC_013093_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_3

919049-919125

Orphan

Consensus_repeat	Method
GCGGTCGCCCCGGTGACCCCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_3

>merge|NC_013093|3|919049-919125|CRISPRCasFinder
GCGGTCGCCCCGGTGACCCCCGCGCTCTTCCCTCCCAAGCTCCCCCCTGCCCGGCGGTCGCCCCGGTGACCCCCACG

>NC_013093|3|2|919049-919125|CRISPRCasFinder
GCGGTCGCCCCGGTGACCCCCGCG	CTCTTCCCTCCCAAGCTCCCCCCTGCCCG
GCGGTCGCCCCGGTGACCCCCACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_049797074.1\|917525_918983_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NC_013093.1\|WP_041837356.1\|925091_925832_+\|cobalamin-biosynthesis-protein-CbiX	unknown	unknown	gnl\|CDD\|239509
NC_013093.1\|WP_012783455.1\|911387_912422_+\|DUF3152-domain-containing-protein	unknown	unknown	gnl\|CDD\|371483
NC_013093.1\|WP_041836574.1\|926721_927177_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_012783452.1\|908585_909485_+\|diiron-oxygenase	unknown	unknown	gnl\|CDD\|378680
NC_013093.1\|WP_143760633.1\|923482_923893_+\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239605
NC_013093.1\|WP_012783463.1\|923931_925077_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235981
NC_013093.1\|WP_012783467.1\|927293_927980_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013093.1\|WP_118945366.1\|914317_915115_+\|TIGR02569-family-protein	unknown	unknown	gnl\|CDD\|131620
NC_013093.1\|WP_118945365.1\|910198_911317_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_013093.1\|WP_012783456.1\|912540_913713_+\|adenylyltransferase/sulfurtransferase-MoeZ	unknown	unknown	gnl\|CDD\|181156
NC_013093.1\|WP_049797073.1\|915289_917281_+\|molybdopterin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|239155
NC_013093.1\|WP_012783460.1\|919253_920606_+\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NC_013093.1\|WP_012783453.1\|909526_910171_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013093.1\|WP_012783451.1\|907696_908524_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013093.1\|WP_012783469.1\|929343_929691_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_012783461.1\|920981_923486_+\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
NC_013093.1\|WP_143760634.1\|925943_926234_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_012783468.1\|927976_929347_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013093.1\|WP_012783450.1\|907307_907700_-\|DUF4873-domain-containing-protein	unknown	unknown	gnl\|CDD\|374407

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_049797074.1\|917525_918983_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	4.16715e-131
NC_013093.1\|WP_041837356.1\|925091_925832_+\|cobalamin-biosynthesis-protein-CbiX	gnl\|CDD\|239509	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.	1.02362e-14
NC_013093.1\|WP_012783455.1\|911387_912422_+\|DUF3152-domain-containing-protein	gnl\|CDD\|371483	pfam11350, DUF3152, Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.74673e-80
NC_013093.1\|WP_012783452.1\|908585_909485_+\|diiron-oxygenase	gnl\|CDD\|378680	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. This family is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalyzing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.	2.99259e-118
NC_013093.1\|WP_143760633.1\|923482_923893_+\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239605	cd03529, Rieske_NirD, Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.	5.0625e-45
NC_013093.1\|WP_012783463.1\|923931_925077_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|235981	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated.	1.53707e-167
NC_013093.1\|WP_012783467.1\|927293_927980_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.24559e-68
NC_013093.1\|WP_118945366.1\|914317_915115_+\|TIGR02569-family-protein	gnl\|CDD\|131620	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein. This protein family is found, so far, only in Actinobacteria, including as least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica, always in a single copy per genome. The function is unknown. [Hypothetical proteins, Conserved].	2.9401e-78
NC_013093.1\|WP_118945365.1\|910198_911317_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.64975e-28
NC_013093.1\|WP_012783456.1\|912540_913713_+\|adenylyltransferase/sulfurtransferase-MoeZ	gnl\|CDD\|181156	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated.	0
NC_013093.1\|WP_049797073.1\|915289_917281_+\|molybdopterin-oxidoreductase-family-protein	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_013093.1\|WP_012783460.1\|919253_920606_+\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	4.20987e-104
NC_013093.1\|WP_012783453.1\|909526_910171_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.34261e-17
NC_013093.1\|WP_012783451.1\|907696_908524_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.50674e-14
NC_013093.1\|WP_012783461.1\|920981_923486_+\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NC_013093.1\|WP_012783468.1\|927976_929347_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.74245e-51
NC_013093.1\|WP_012783450.1\|907307_907700_-\|DUF4873-domain-containing-protein	gnl\|CDD\|374407	pfam16170, DUF4873, Domain of unknown function (DUF4873). This family consists mostly of short uncharacterized proteins found in various high GC Gram positive bacteria, primarily Mycobacterium species. However in some proteins, such as for instance Rv0943c proteins from Mycobacterium tuberculosis H37Rv, DUF4873 domain is found at the C-terminus, following the flavin-binding monooxygenase-like domain pfam00743, which is why probably many proteins with DUF4873 domains are annotated as monooxygenases. However these functions are not confirmed experimentally and the function of DUF4873 domain is still unknown.	6.78365e-41

>NC_013093.1|WP_049797074.1|917525_918983_+|NAD(P)/FAD-dependent-oxidoreductase
MAGARFAEEVLRRDPGGERVGLTLLGAERHPAYNRVLLSSVVAGSLPPESVRLHAPDWAERSAADLRLGASVGKVDRVRRVVQVDDGEVPYDALVLATGARPWLPPVAGLVGVDGVLAPGAVAFRTLDDCAAITSAARPGAPVVVLGGGLLGLEAARGLVARGCLVTVVHPRSHLMERQLDAGAGRVLARALGGLGVELRLGAVAERYEPGEGLRLADGTRLAADLLVVAAGVRPAVELAAQAGIAVDRGVLVDDALRTDDPRVHAIGDCAQHEGAPTGLVQPAWEQAAVLADRLTGTDPAARYRGGGAVTRLKARDVDLVALGEVHVGVDDERAEVLALEDPARGRYAKLVLRDDRVTGAILLGVPDAAAAVTQLYDRGLPAPSDRLGLLLGRALPAGAVAEASPADLPAGAVVCRCNTVSKGQLVSAWRAGARSAPGLVEATRAGTGCGGCRDAVCGIADWLAAAEPSTASAVENQRSAVRGL
>NC_013093.1|WP_049797073.1|915289_917281_+|molybdopterin-oxidoreductase-family-protein
MTIVDGEVSPREFPTNRGGLCQKGWTSAALLTSPARLTTPLVRDRSPDGARGELRPASWDEALDLVAGRLVALRRDHGPDSVGVFGGGGLTNEKSYLLGKFARVALGTSQIDYNGRFCMSSAAAAGTRAFGLDRGMPFPVTDLDDSGAVLLAGGNPAETMPPFVQHLRGAALVVVDPRRTATAELAAVHLAPAPGTDLALALGLLHVAVADGHLDKTYVAERTTGFDDAWRIAATWWPERVERVTGVPVADQRAAVRLLAEADRAHVLTGRGTEQHASGADAVSAWINLALALGLPGTPGSGYGCLTGQGNGQGGREHGQKADQLPGYRKITDPVAREHVQRVWGVDELPGPGRSAYELLDALGQPDGPKALLVFGSNVVVSAPRAGHVADRLAALDLLVVADLVLSETAARADVVLPVTQWAEESGTMTNLEGRVLLRQRAVRAPDGVRSDLEVLRGLAERLGQPGERFPVEPEVVFEELRRASAGGPADYSGVSYARLAAGEALHWPVVPDSTPRVFLDRFAHPDGLARFAAVDHRGPAEPPDADYPLQATTGRVLQHYQSGAQTRLVAELVAAEPEAYVEVHPDTAGRAGLAHGGMAAVVSRRGRTLARVRCVASMRVDLVFLPFHFPGDGRANLLTNPALDPVSRMPEFKVCAVRLERV
>NC_013093.1|WP_118945366.1|914317_915115_+|TIGR02569-family-protein
MTPTPEPPPSHVRAAFGARDVEPELIDGGPAWRCGEAAIRPAGKPAEATWVAKTLDALDVEGLRVARPLRSTDGRYVVGGWAATKYLSGRAEPRHDDVVEVAVRLHEATAGMTKPRFLDARTDLFAVADRCAWDDERTALRPELGGRLFELMTSYRKPITAKPQVVHGDLFGNVLFAGDAPPAIIDFAAYWRPAPYGAAVVVVDALSWGGADRGLVQRWSHLEEWPQVLLRALLFRLAVHALHPQSSARSLVGLERAAGTVVELL
>NC_013093.1|WP_012783456.1|912540_913713_+|adenylyltransferase/sulfurtransferase-MoeZ
MALPPLVEPAAELTKEEVARYSRHLIIPDVGVDGQKRLKNAKVLVVGAGGLGSPALLYLAAAGVGTLGVVDFDVVDESNLQRQVIHGQSDIGKPKAESARESVAEINPFVKVVLHQAQLTSENALEIFRDYDLILDGTDNFATRYLVNDAAVLLGKPYVWGSIFRFEGQVSVFWEDAPNGQGLNYRDLYPEPPPPGMVPSCAEGGVLGVLCASIGSIMVTEAIKLLTGIGDPLLGRLMVYDALEMSYRTIRIRKDPESPKITELIDYEAFCGVVSDEAQQAAAGRTITPLELKQKQDAGDDFVLVDVREPHEYEIVRIPGSVLIPKDRILSGEALAELPQDKPIVLHCKSGARSAEALAALHRAGFADAVHVGGGVLAWARQIDQSLPTY
>NC_013093.1|WP_012783455.1|911387_912422_+|DUF3152-domain-containing-protein
MNRTSGERRGPAPSPDPARSSLTEDRYRRGARRTAGEPLAAAWEPDGAKPRKRKRSIKNLIGNYGWRIYAVPVLVVLTALVVLDTAAQDDQGGGVAQQGGGLGQDRSEQAEDHPKVDETPPANTALVDIPTAVLPEGPSYTEQGAGTWEVVQGRTEKAGDGPLRKYAIEIEVGINPIDHGGDVTTFARTVDAYLADQRSWVGTGNVSMQRVDDGSEDFRISLTSVQTTHGLCGNQIQYESSCYNPDREKVVINVSRWVRGAKAFSNDIANYRQYAINHEVGHALGKGHEACKDDGRPAPVMMQQTFGVANDYVAKLNEVDASNRGAVPADGKTCTPNAFPVAPQ
>NC_013093.1|WP_118945365.1|910198_911317_+|alpha/beta-hydrolase
MRRSSSCPRAGWNRSATRQPYSLVGASPVSFPRTARFTLPRRRHPGGVTQPQEATRTALTRVPLSTTALPPLDTAIPPWPGEQVQVDGHRLHVRTTPGPDGADTAVYVHGLGGSSTNWTDLSGQLAGHVDGRSVDLPGFGRSEPVDGYPYSIAAHARAVTRYLESLGRPVHLFGNSMGGTISLVIAATRPELVKSLVLVSPAMPDLRLSTSRMADPLIALAYLPLVGRTARKRLAQVSHEERARQTVRLCFSDPSVVPDNRIAESGREVAERATQAWASAALGRSTTELVRSWLLRGPSSLWLLPPEVTAPTLVVWGADDRLVSVRKAPRLTRALPRGRMLVLPRTGHVAQMERPVLVARAVAGMWEAGDRW
>NC_013093.1|WP_012783453.1|909526_910171_-|TetR/AcrR-family-transcriptional-regulator
MTETAQTVGQNGGSAGRGVRLPRTARRAQLLAAAQDVFVSNGYHAAAMDEIAERAGVSKPVLYQHFPGKLELYMALLESHVDGLVARVRGAIGSTTDNKQRVRAAVAAFYDFVDDQGQAFRMVFESDLRGEPAVASAVERATADSVDAITETITSDAGLDEHRARLLATGLVGLSQVTARSWLAGDRAIPKEDAVTLISNLAWKGIGGGFPLQH
>NC_013093.1|WP_012783452.1|908585_909485_+|diiron-oxygenase
MARQLKATDREKTAERLLNSSAARSYDPEVDIDWSAPLADGLLYLPEHRTSLYGTELWAGLSREQRVELGRHEVASVASVGLWFEVLLMQLLLKDVYSGDPTSRHVQYALTEIGDETRHSTMFARMVERIGCPAYGPGRRVHRLGRLLPVLGYGPAVYAAILVAEEVLDRLQREMTADEGVQPLVRMVSRIHVLEEARHVRFAREEVVRGVRGLSRAELPYQRWLLAVVAMHITRSLIHPEAYRAVGLDPVEATRAAAGNPQWRETIRWAGERVVAFLDEVGLVGAPGGYAWRRSFLLG
>NC_013093.1|WP_012783451.1|907696_908524_-|TetR/AcrR-family-transcriptional-regulator
MVRTVKGGTDARRERWKGHREARRAEFVEATIRAVARHGADVGMDEIAGEAGVSKPVLYRHFADKADLYLAVGRRATELLMDRLGPAIEGDGSLRARITRIVDAYLSVIEEHPHLYRFVVRAAFAERPVEQDVVGEDKAMIATALTRLFGDFLRANGMDSGGAEPWAHALVGMVQNAGDWWLDRQSMSRASLGDYLSTIIWHALDGLLRSAGVVLDPDEPIEARVTGASGASGASGTSAVTGASGASAVTGASGAAGQAQAGPGQAGLRLVGEQP
>NC_013093.1|WP_012783450.1|907307_907700_-|DUF4873-domain-containing-protein
MTGAGAGPEGLAGAGGAGQPDEQPEDQTEKQTEKQTEDHEGYSGPAVLVLGGHEVRVEVDLRGFFQPIDGRYHWYGRIAADPRVTGLVEAGARTADLRTPAGSATGSLGDPDPWGRYRVAGTGAPPFTAA
>NC_013093.1|WP_012783460.1|919253_920606_+|NarK/NasA-family-nitrate-transporter
MSTVHEDRGAVARSRRGGRWIDRWEPEDPEFWAREGRRVARKNLVFSVLAENLGFTVWSLMSIVVVSLGQVGFAFTVGQTFWLLIVPNLVGAVLRVPYTFAVPRFGGRAWTAFSAGMLLIPCAMLAYAVSTPGTPYWFFLLTAATTGFGGGNFSSSMANISFFYPEGKKGLALGLNAAGGNLGVAMVQLVVPIVITWGAGINLAYAALVWMPFVVVSTACAWLFMDSLTEARPDGTSYRLAMTNRHTWVMSLLYIGTFGSFIGFSFAFPSLIKLSFAEQKGFVALAFLGALIGSVTRPFGGWLADRLGGARVTVGVFVGLALGCAGVLVSVETRSFPLFFGSFIVLFVLTGLGNGSTYRMIPAIFATQVADAASAKRQAAAVVGIAGAVGAFGGVLVNLVFKFSLEGGKTLAPALTAFLGFYALCVVTTWWFYLRRVSFGRVPSLAHAGI
>NC_013093.1|WP_012783461.1|920981_923486_+|nitrite-reductase-large-subunit
MTRTLLVVGHGMVGHRLVQAVRERDVDGAWRVVVLAEEPRAAYDRVALSSYVDTWDASGLALEPHDDAVELRLGESVTGVDRAAKRVRTSTGAELAYDALVLATGSSPFVPPVPGRDLPGCHVYRTIDDLDAIRATVDAARLRGAGQRGMGRRAGMVLGGGLLGLEAANALRGMGISPHVVELGPRLMPLQIDEGGGALLKRMVEKLGLTVHTGVSATAVTRDGDRLAATLSDGRELDLDVVVFSAGIRPRDELARAAGLDVGPRGGVVVDGGCRTSDPDVYAIGECALVGGVVYGLVAPGYAMAEVVADRLLGGAAEFPGADTSTKLKLLGVDVASFGDAHATSPGALEVVVNDAVAGTYAKVVVSDDARTLLGGVLVGDASKYPALRPLVGRPVPGDPVSLIGAAAAELALPADAQVCSCHAVTKQQVTDAITSGRAVDVPGIKACTKAGTGCGSCVPMLKKLLAECGVEQSRALCEHFPQSRAELFEIVRSTGVGTFSELVARYGSGRGCDLCKPAVASILASLENGHILGGEQVTLQDTNDRFLANIQRNGTYSVVPRIPGGEITPEKLIVIGEVARDYGLYTKITGGQRIDLFGATVDQLPLIWRRLVDAGFESGHAYGKSLRTVKSCVGSTWCRFGVQDSVGLAIELELRYRGLRSPHKFKSAVSGCARECAEARGKDFGVIATENGWNLYVGGNGGFTPRHADLLVSDVDTGMLIRIIDRFLMFYIRTADKLQRTAPWIESMEGGLDHLRDVVVHDSLGICADLEAAMAKHVDSYADEWRGVLDDPEKLARFTSFVNAPGAPDPTISFREERGQRVPVVLGIPEVAR
>NC_013093.1|WP_143760633.1|923482_923893_+|nitrite-reductase-small-subunit-NirD
MTGVCPMAPATPMAQVVPIAQVGPVAPVGPVVPVCDLSALQPERGVAALLPDGTQVAVFLTSDGGLHALGNVDPFSGAAVLSRGIVGDRGGVPVVISPLYKQAFELSTGRCLDDPAVVVESYPVSVVEGVVRVGAP
>NC_013093.1|WP_012783463.1|923931_925077_+|uroporphyrinogen-III-synthase
MAGGGAAAAGPLAGFTVGVTAARRAEELVALLERKGAAVLHGPAIRIVPLHDDAKLLEATELVLARQVDAVVATTGIGFRGWVEAAEGWGLGDRLLTALGDGLLLARGPKARGAVRAAGLVEDWSPSSESNAELLEHLLGLGVAGKRIAVQLHGIPLPEFTGALREAGAEVVEVPVYRWTGPADPGPLERLLEGVLSGQVDAMTFTSAPAAASVLETARQMGRYEEVLAALRRVLVVCVGAIAAGPLVAVGVPVVQPGRARMGALAREVVVELPARAVRVPVEGREIELRGQGVLVDGELRPVAPAPMAVLRALVEARGRVVSRKELLAALPGGGEEHAVETAVGRLRTALGDPGVVATVVKRGYRLAVEPSRFECGGVAV
>NC_013093.1|WP_041837356.1|925091_925832_+|cobalamin-biosynthesis-protein-CbiX
MVLVAHGTRHPGGGVVVEEIARLVRERGGVDVRVAYADVRQPDVTAVLREVRGPAVVVPAFLAAGYHVRVDVPAQVVASGHRDVVIAEPIGAAVVPAVVERLREAGWREGDPVVLGAAGSSDARALGEVRKVAEVLAQWVGGPVRVGYAATASPRIGEVVAEVRAAGAAGAAGAAAAGAAGAAGAAGGGSGGRVAVASWLLAPGVFHRGMRECGAEIVSEPIGAHERVVEAVLLRYYEGRRSRWAA
>NC_013093.1|WP_143760634.1|925943_926234_-|hypothetical-protein
MAKYTPGMTVMFKHQKHVVLRTNLKADGKDALMITPLHKDKPSGDASYIRANTSWDYRWFQLGHGTVVETATVSNTGVFPFSLNGETLKTLLKALN
>NC_013093.1|WP_041836574.1|926721_927177_-|hypothetical-protein
MALRLNPVRWALVLLVVGLAAVAVVVALSWPESTAEGALTEATVTTPAPCSGPEAFDQVAYDLNGTRHEAKLDGCGHSENEIVRVLVKANTTADTLLQSASTVSDNTIPLAGRLSGMLVCLSGLAGALYAYLLTRRGTTPLPTLIPNKVGP
>NC_013093.1|WP_012783467.1|927293_927980_+|response-regulator-transcription-factor
MGAVPTAARVLVIEDAEAIGAAVGSALREQGYQVRVRPDGRDLEGELTRFRPDLVVLDVMLPGRDGFALLEVIRRGSGAGVVMLTARDGVQDRLRGLDRGADDYVTKPFVLAEVVARVSAVLRRLGRTPSTVQIGDLVVDADSAVVVRGNAQVELTATELRLLRYLAAQRGRVVGKTQILTAVWGYEDYDPNLVEVHVSALRRKLEEHGPRLLHTVRGLGYVLRAEDS
>NC_013093.1|WP_012783468.1|927976_929347_+|HAMP-domain-containing-histidine-kinase
MSLRTVSLRRRVTVSSAAVLAVVVLGLVLLVDSQFEAQSRRDMDAVLQDKARAAQQFVKQRVRGAELVNRLENRGVRVLVELPSGLKFGQEPSGDVRREVTRNLADGSTVTLYADTSVLSAAQSRLRSVLVTGGLAAIGGAVVALVWVVRRALAPLDAMTTLARSIAAGRRGHRLNPSRVENELGRTAAAFDDMLDSLEGSEQRTKRFVADAAHELRTPIAGVQAVAEALVQSSSAEEREQFNLLLVREARRAGRLVDDLLQLARIDAGLELQVGAVDLLGLAEAEVARSRLLAPDLDVEAEGERVVVVADAERLAQVLVNLVDNARQATGREGVVRLRVWRAGDRAWLTVSDNGPGVPLLERERIFDRLVRLDESRDRRRGGSGLGLSIARGVVRAHGGELTCLAPQMGRPGATFRVVLPIGPEEGPGEKPVEADEKASEGTTVEAEGPEGGERD
>NC_013093.1|WP_012783469.1|929343_929691_-|hypothetical-protein
MTSDPDPNRPQTAGRELAAQAPKSGKPAWKEPALVLAVTTAAALLFGVLVPSYRAGGFEVSTGPIITVAIAATIFWGVYGRGGVRAHRESKEAALQEVRAQRSPDAGHNAPPRPP

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Crispr_ID: NC_013093_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_4

1868160-1868239

Orphan

Consensus_repeat	Method
GACCGCGGCGCGCGGAACGGCCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_4

>merge|NC_013093|4|1868160-1868239|CRISPRCasFinder
GACCGCGGCGCGCGGAACGGCCCCGGATTCGGGGGCACCCCCGGCATCGGGGGCGACCGCGGCGCGCGGAACGGCCGCGG

>NC_013093|4|3|1868160-1868239|CRISPRCasFinder
GACCGCGGCGCGCGGAACGGCCCCGG	ATTCGGGGGCACCCCCGGCATCGGGGGC
GACCGCGGCGCGCGGAACGGCCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015800544.1\|1863262_1864804_-\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|377940
NC_013093.1\|WP_015800556.1\|1879377_1881156_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_013093.1\|WP_015800547.1\|1866344_1866932_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_013093.1\|WP_015800551.1\|1873592_1874753_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NC_013093.1\|WP_084798824.1\|1858319_1859168_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NC_013093.1\|WP_015800546.1\|1865826_1866204_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015800555.1\|1878009_1879203_+\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173790
NC_013093.1\|WP_015800539.1\|1859177_1860443_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NC_013093.1\|WP_015800549.1\|1869962_1871558_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit	unknown	unknown	gnl\|CDD\|178415
NC_013093.1\|WP_015800554.1\|1876597_1877743_+\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173790
NC_013093.1\|WP_041837495.1\|1860532_1861144_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_041836656.1\|1862973_1863336_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753
NC_013093.1\|WP_143760677.1\|1876295_1876571_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_049796767.1\|1864843_1865713_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197642
NC_013093.1\|WP_015800558.1\|1883099_1884374_-\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	unknown	unknown	gnl\|CDD\|133031
NC_013093.1\|WP_015800542.1\|1862024_1862888_-\|fused-MFS/spermidine-synthase	unknown	unknown	gnl\|CDD\|223498
NC_013093.1\|WP_015800552.1\|1874793_1875762_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237361
NC_013093.1\|WP_015800550.1\|1871565_1873596_+\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NC_013093.1\|WP_041836660.1\|1881655_1882846_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015800537.1\|1857402_1858248_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238194

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015800544.1\|1863262_1864804_-\|YibE/F-family-protein	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	1.73676e-93
NC_013093.1\|WP_015800556.1\|1879377_1881156_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_013093.1\|WP_015800547.1\|1866344_1866932_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.05975e-07
NC_013093.1\|WP_015800551.1\|1873592_1874753_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	7.23483e-82
NC_013093.1\|WP_084798824.1\|1858319_1859168_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	2.07923e-73
NC_013093.1\|WP_015800539.1\|1859177_1860443_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NC_013093.1\|WP_015800549.1\|1869962_1871558_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_013093.1\|WP_015800554.1\|1876597_1877743_+\|S8-family-peptidase	gnl\|CDD\|173790	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K.	5.30427e-109
NC_013093.1\|WP_041836656.1\|1862973_1863336_+\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	1.14268e-36
NC_013093.1\|WP_015800555.1\|1878009_1879203_+\|S8-family-peptidase	gnl\|CDD\|173790	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K.	3.21539e-120
NC_013093.1\|WP_049796767.1\|1864843_1865713_+\|hypothetical-protein	gnl\|CDD\|197642	smart00306, HintN, Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.	1.4951e-05
NC_013093.1\|WP_015800558.1\|1883099_1884374_-\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	gnl\|CDD\|133031	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.	1.46948e-76
NC_013093.1\|WP_015800542.1\|1862024_1862888_-\|fused-MFS/spermidine-synthase	gnl\|CDD\|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	1.3582e-22
NC_013093.1\|WP_015800552.1\|1874793_1875762_-\|hypothetical-protein	gnl\|CDD\|237361	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional.	0.000470144
NC_013093.1\|WP_015800550.1\|1871565_1873596_+\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_013093.1\|WP_015800537.1\|1857402_1858248_-\|peptidylprolyl-isomerase	gnl\|CDD\|238194	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. .	6.72815e-51

>NC_013093.1|WP_015800547.1|1866344_1866932_+|TetR/AcrR-family-transcriptional-regulator
MATETRRRQVDRSADTRRRLLAATVECLVEHGWAGTTTTVVAERAGVSRGGQLHHFRTRGELVAAAVEHLGAESVAHLRRLAERVEGGPVAVVELIAEFYASDRFAAALELWVAARTDPALRIAVVPLEAALGRETHRLAVELLGADEAKPGVREAVQITLDLARGLALANQLTDDGKRRRRIARHWAGMLEAVL
>NC_013093.1|WP_015800546.1|1865826_1866204_+|hypothetical-protein
MTFTPSDEDITSVLDWFARWDALCAERDLEALADMAMFPVNAVTDGSAESWDRERFLRDFGAALGDGGLELRSTRSPLFLSADLVFVVTDAEFGSGAEAGSMRYGDLLVRKDGRWLYQTMAQGGW
>NC_013093.1|WP_049796767.1|1864843_1865713_+|hypothetical-protein
MGGRVGAHCLAADTPALLADGSTRPIGALRPGDRVFGTRDGRYSPTVVIARSTATRPAYRVSLAGGTQVVSGAGNRLRTDLGWRALTPGGERLHLTRGTRVQGTGRFAAPPERNRDYRLGYLWGAVRGGPPVVPEVLARVREFAGGGEPRERDLVEWPTQLGDDWAKGFLAGVFDVRGAAVGGQVVLSSPDSAVFEAVVVALLRLRVPHSVEVRGVRVTGAPAERLRFLHLVGPVLARPAVLEGVQVGGAPALGVVSVESLGIEVEMGAVTTESGDLVVNGLIACADGR
>NC_013093.1|WP_015800544.1|1863262_1864804_-|YibE/F-family-protein
MIVKPSPGRPLHPLSRTTTGTIATVRATDHLPARGHGHGHTPAGPASAPVRRLLLVLLLPLVLATVAGALVLYPFGQEIKTGSEVGINHTPVRGEATKVEKGPCAVGLPEGTPVPQDEGCFLVTVRMTDGAAADRDVTIPVPDQPTSPTVSAGDEVVLSYSGTEPTSPLSYQLVDFQRGLPLSLLALLFVGAVLVLGRWHGLRALGALGLSFVVLALFVLPAILAGEDPLWVAVVGAGLIMFVVLYVSHGVSARTSTAVLGTLVSLALIGALGALFGAGARLTGLDEQTANLVTILGHGIDTRGLLLAGTIIGALGVLDDVTVTQTSAVWELRAANPSMGFGQLYAAGARIGRDHLSSVVNTLVMAYAGAALPLMLSFALSGQDLGTILTAQDVAQEIVQTLVGSIGLVAAVPVTTALAAFVAAREEVVAGDDEEPAPAKDDVEDGVEEDEDGEPVAAERAPEPTPPPARSRIAGDLRYGYDPSKEWERVSPRSARPPAPPRRARPGRRGFDD
>NC_013093.1|WP_041836656.1|1862973_1863336_+|DUF1304-domain-containing-protein
MNTVADVLIALVALIHVYIVVLEMALWKKPRGRAVFGTTEEYAEQTAVLAANQGLYNGFLVAALVVALVADGDVGYAFSVFSTACVVVAGVYGGFTVSRRILFVQAGPALAALVAVLIAG
>NC_013093.1|WP_015800542.1|1862024_1862888_-|fused-MFS/spermidine-synthase
MGRARRTDDTITREVDSGIAELVPDPYYDNGWTLLLNGTPQSHVDLDDPANLVFEYVRRIAHLADLLADEGEPLRAVHLGGGAMSLPRYIAATRPGSSQQVVEIDEALVDLVRGVLPLRRDWRVRVRRGDARAVLAKAPEDTFDLIVTDAFAGARTPAHLTSREYVELAARALNARGVYSSNIGDGGDRAFARGQIATIRSVFRNVCVIAEPAVFKGRRFGNFVIAASNQDLPLAELIRRTAGDPFPGQVEHGESLTRFTGGARPVTDETATRSPEPPQGTWGISED
>NC_013093.1|WP_041837495.1|1860532_1861144_+|hypothetical-protein
MPLDLLDPATVRKRSRMVAVGALIVAGAFGGLVGLLGGQTAGLVTAAIFGVPLLLLAVSEARRRVWLEGSVLSVRAYGTRVVDLKTADSLDVLVTDTRGTRTVGLFARGGHKAINLALALYAGTGGRELGIYPLRTLADVLASRGDAQSLALSELLVAQLRAEARGAAAADRPLYRLGSLAPSGKLAQKLKPEAISRFVAQLD
>NC_013093.1|WP_015800539.1|1859177_1860443_+|histidine--tRNA-ligase
MTTPFAAPKGVPDYFPPNSAAFTAVRSALLGATARAGYGYIELPVFEDTALFARGVGESTDVVSKEMYTFTDRGGRSITLRPEGTAGVMRAVIEHGLDRGQLPVKLAYAAQFFRAEQPQAGRYRQFHQVGVEAIGVDDPALDAEVIAIADEGFRALGLTGYRLELTSLGDATCRPQYREKLQAFLAKLPLDEDTRRRAEINPLRVLDDKRPEVRELVAEAPLMLDNLSPETLEHYERVKAHLGDLGVKYVENPRMVRGLDYYTKTTFEFVHDGLGAQSGIGGGGRYDGLMAQLGGQELSGVGFGLGVDRALLACQVEGLAVGDVTRCDVYGVPLGDAARSRLVGIGAPLRAAGVRYDMAYGGKGLKGAMKGADRSGARFALVLGERDIEAGVVQLKELATGEQREVPLDDVVTEVRGALGR
>NC_013093.1|WP_084798824.1|1858319_1859168_+|MBL-fold-metallo-hydrolase
MTGVWRIGWCTGARRSRAAPQQIPQSAPRPIPPSVERSRSRKSERGSPVLVIGFPTGALQANCYLVASEAGGACVVVDPGQDALEPIAEAVREHRLSPVAVLLTHGHFDHSYSVAPVCDGDDIPAWVHPADRAMLSDPLSGVSAETRAFFGGRLEMREPREVRELSDGAELDLAGLRFTVDHTPGHTGGSVMFRSGVEEGGRLVLSGDTLFAGSIGRTDLPGGDHGAMLGSLRRKVLTLDDDVVVLPGHGPTTTIGRERASNPFLTELVRDDDAPAAQRRGL
>NC_013093.1|WP_015800537.1|1857402_1858248_-|peptidylprolyl-isomerase
MPNNAQRREQAKRKLERQITRRVERDKRRRVVAVISTAVVVLLVAGGVYFLATYDFGSDTTDTAASSSAAPQSDKPASIPTELHAAIKRPTPLAPQVSCEYAAEGESAKPGAKAPENGQVSSEGTVAATLGTSIGDLKLTLDRSLAPCTVNSFVSLVKQGYFNDTTCHRLTTQGIQVLQCGDPTGTGTGGPGYKFNDEVFPEITYGRGVLAMANSGPNTNGSQFFIVYGDASSLPASYTVFGTVDADGLKLVDEVANAGTDSGAGDGKPNTPVDIKTATTA
>NC_013093.1|WP_015800549.1|1869962_1871558_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit
MTTLTSAVDPDSAEHRANREAMLARLADLEAEHAKVLAGGGPKYVDRHRARGKLLARERIELLLDLDAPFLELSPLAAWGTEHPLGAGLVTGVGVVSGVECVITANDATVRGGSTNPWSLRKSLRANDIAAQNRLPLIGLVESGGADLTSQSEIFIPGGRAFRDLTRLSAAGIPTISTVFGNATAGGAYVPGLSDHTILVRDRAKVFLGGPPLVRMATGEVADDESLGGADMHGSTSGLADHVARDEVDALRLTRRVVARLNRRKLGRAPGPVDEPLHDPEDLLGLVPTDLRVPFDPREVIARLVDGSRFDEFKPDYGTSLVTGWADLHGYPVGVLANARGVLFSQEAQKAAQFIQLANTSATPLLFLQNTTGYMVGASYEQGGIVKHGSMMINAVANSRVPHLTVVMGASYGAGNYGMCGRAYDPRFLFSWPSAKSAVMGPAQLAGVLSIVARQAAAARGVPYDEDGDAAMRRAVEEQVEAQSLAPFLSGRLYDDGVIDPRDTRTVLGLCLSAAHSGEVVGADRFGVFRM
>NC_013093.1|WP_015800550.1|1871565_1873596_+|ATP-grasp-domain-containing-protein
MIGRLLVANRGEIARRVIRACREAGVSPVAVHADPDAGEPHVREADASVRLPGEHPADTYLRADLLVAAALASGADAVHPGYGFLSENAAFARAVLDAGLTWVGPDPEVIAAMGDKVAAKRVMREAGVPVLPDLDPVTADRFPLLVKASAGGGGRGMRVVREAAGLAGQVDAARREAASAFGDGTVFCEPLLEGARHVEVQVLADRRGTVWALGERECSIQRRHQKLVEETPSPAVDDRLRAELCAAAVRAARAIGYTGAGTVEFLLDDSGAFHFLEVNTRLQVEHPVTELTWGVDLVAWQLAIAEGAQLPDAPPAPSGHAIEVRLCAEDPEREWRPSHGVVRRFHVPGDVRVDSGVEAGSAVGVRYDPLLAKVIAHGPTRAAAVRKLAAALERAELHGVTTNRDLLVAVLRHPAFGRGDTHTGFLEQHRADLLGARPVDVRHAALAAALARSAHRARALPAGWRNLPSQPVRVAFEHRGERVEVDYLRTRDGITTGLDVEVVAAWPDVVRLRRGGVETAWPVTHYPPPDPSGEPGPGDRVEVGPVTLTPLPRHPAPERRTPRGTTTAPMPGVVVRVEVAEGATVAEGELLLVLEAMKVEHRVRAELAGVVTAVPVAEGRSVAEGDVLVVLEPAGPAVTAGSATPADPATPADPATPADPATPADPATPADPEEQQ
>NC_013093.1|WP_015800551.1|1873592_1874753_+|acyl-CoA-dehydrogenase
MTAFTESAERADLRAAVAAFASRYGERYFLDKARSGGKTHELWAEAGKLGYLGVAVPEEHGGGGGGIGDLAAVCEELAAAGCPMLLLVVSPAICATVITRFGTEAQKARWLPGFADGATKMAFAITEPEAGSNAHRLTTTIRRDGDDWLLTGSKHYISAVDEADAVLVVARHVDASGQRLAPSLVVVPTDAPGFTRHEIGMELVSPEKQFTCFFDEVRLPADALVGDPSAGLDQLFAGLNPERIMAASYATGVARRAIAKAADYARTRTVWDVPIGAHQGLAHPLAQVAVQVELARLMTQKAAALYDAGRDREAGESANMAKYAAGEAVAAAVDQAIQVHGGNGLSTEHGLGALLTASRLSRIAPVSREMILNFVAQHTLRLPRSY
>NC_013093.1|WP_015800552.1|1874793_1875762_-|hypothetical-protein
MSAQVVGRESPVGDPGRIGGGGDPFACALRTAIRAKGLSLERIQHRLRGRGSTVSIAALSYWQSGRRRPERPDSLTALAHLEEILDLGEGALRSLLGPPRPRGKARPRPVPASSPLGWVADASASEPMAELLADVDTSSDHDLTRLSLRDQVELAMDGSTRRVRSRQVLRAERGGVDRVLLGYDTRLPGDPLPVIGTLRGCSLGRVATDPRNGLMIAELLFDRPLRRGERTAVEYELIYVAPHHPTFDNTHTRRFRHTVKEYVLEVRYDSRCRPARCEQFTSGLTDVEPAEVRETPVDAWGYAYAVAVDFGPGVVGLRWEWA
>NC_013093.1|WP_143760677.1|1876295_1876571_-|hypothetical-protein
MGVRGRAGSAGGGWAPGANRSRTAPQWENEARASVRVVAPTVTAAAYVPLPFPSRATLSFSIASLRVVVAVNRWSCSTSATAGSAASLRMR
>NC_013093.1|WP_015800554.1|1876597_1877743_+|S8-family-peptidase
MSRNHVPLLTAALAVVALATPASAEEGRVLSAASPDAIPGSFLVQLKPTASAADFDGSGVRAPGVRAERVLEGAFHGFTARLTDRQARRLAAHPDVELVEQDQVVRPYAVQTNPPWHLDRLDQVALPLNAQYGYTTTGQGTRAYVVDTGVRITHQQFGGRICAGWDVVENDEIGQDLNGHGTHVAGLIAGSTHGVAKSASICPVRVFDANGSGTTAGVVQAVNWIRLNAVKPATANFSLGGAASTALDTAVQALITSGVTASVTAGGSNGDAANHSPARVAAAITSGATTNTDARAPYSNYGSIVDVYAPGQSITSAWHTSDTATNTLSGTSMSTAQVTGVANRYLHANPTATPAQVHGAIVSWATPQPWGGKLLHWPPQL
>NC_013093.1|WP_015800555.1|1878009_1879203_+|S8-family-peptidase
MLESRHHRYLAGVGTAALLMGVMATPAGAATGEILSADAEKKVQNSFIVKLKDGYTAASSTEAVTAKLTSRFGGQVKHTYSSINGFAVSLSESAAKRLAADPSVEYVEQDQVFSIQATQTNPPSWGLDRIDQRNLPLNSSYSYTSTGSGVRAYVIDTGVRIAHNAFGGTAVNGYDAVDGDNVAQDGNGHGTHVAATVSSASYGVSKAAQIVAVRVLDNAGSGTTAGVVAGINWVTNNHVKPAVANMSLGGGASTSLDNAVASSISAGVTYAVAAGNSNANASSYSPARVASALTVGATTSTDARASYSNYGAVVDIFAPGSSITSAWSTSNTATNSISGTSMASPHVAGAAARYLSTTPSATPAQVATYLTGQATTGKVTSPGTGSPNRLLYLAPTA
>NC_013093.1|WP_015800556.1|1879377_1881156_+|aspartate--tRNA-ligase
MMRTHEAGTLRAEHAGQSVTLTGWVARRRDHGGVIFIDFRDASGVAQVVFREGEMAERAHRLRSEFVLKVVGEVSRRPEGSENPDLPTGAIEVYASEFEVLNESAPLPFQLDEHLEVGEEARLRHRYLDLRRSGPAKAMRLRSEANRIAREVLHSERFVEVETPTLTRSTPEGARDFLVPARLRPGSWYALPQSPQLFKQLLMVGGLERYYQIARCYRDEDFRADRQPEFTQLDIEMSFVEQDDVIALGEKIITALWKELGDHDVAQPFRRISYAEAMAKYGSDKPDLRFGLELTELTEYFKDTPFRVFQAPYVGAVVMPGGASQPRRTLDAWQEWAKQRGAKGLAYVLVGEDGTLGGPVAKNLTDAERDGLAKAVGANPGDCVFFGAGDVDGARALLGAARVEIANRVGLIEEGSWSFVWVVDFPMFEAVDKIGDDVAVGSGKWTALHHAFTSPTPEWVDNFETDPGNALAYAYDIVCNGNEIGGGSIRIHRADVQQRAFDVMGIGAEEAQEKFGFLLDAFKFGAPPHGGIAFGWDRITMLLSGVDSIREVIAFPKSGGGYDPLTAAPAPITPQQRKEAGVDAKPAAPKQA
>NC_013093.1|WP_041836660.1|1881655_1882846_+|hypothetical-protein
MSVETTASPVDVEPGLLDAVRAAETVLSSRFGARVTLADPENLGGAGRSTVARVRVASTPFSLPRTLVVKRYPEQVADRDPFAHEAASHKLLTALPAEERATPELFAQDTRKRLVVLEDLGKAPRLAEKLLGSDARVAERGLLSWAHAMGRLHATTAGRDADFDALMRRQGSQCCADPVAVDLHVALAGLPDLLREVLGVDTPTSVLEFADHAVRGFGTSRHRAFSPSTSCPDNHLVTGRGVRFLDFEGGCVRDIVFDAACLRVPFPSCWCAYGLPPGMSEAMLAAWRAEVSSVWPDLDDDDVFLPRLLEAQLLWLWLGTWRGLPSLEGQGQNGHGKRLDVPPRIQILTSRWVRLRTEALGLGVKHVAAFAEELVDALVARHGSSALELALYPAFR
>NC_013093.1|WP_015800558.1|1883099_1884374_-|bifunctional-glycosyltransferase-family-2/GtrA-family-protein
MTLPTPPPTPPAPLARTRTTVLDVVVPVYNEERALASSVRVLHANLTARFPHSFRITIADNASTDTTAQVADRLALEFGNVVAVHLPQKGRGRALNAVWLASDAQVLAYLDVDLSTDLAALPPLVAPLISGHSDVAIGSRLARGARVVRGPKREFVSRCYNLVLRASLSAGFTDAQCGFKAIRADVARRILPHVQDTGWFFDTELLVLAERAGARIHEVPVDWVDDPDSSVDIVATALADLRGVARLGKGLLSGGLPIAQLSAQLGRAPLEPATPGAPPGLLRQLVRFAVVGVASTLAYLLLFALLRDGVGAQWANLVALLVTAVANTSVNRRFTFGVRGKRGAGRHQLEGLLVFALGLAFTGGALALAHGVADPGGHAELVAVVGGNLLATVARFLLLRNWVFRGNGKKVGNAEQPRVGVGAS

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Crispr_ID: NC_013093_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_5

2530584-2530691

Orphan

Consensus_repeat	Method
GCCGCCGTGCCCGTGCCGCCGCGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_013093_5

>merge|NC_013093|5|2530584-2530691|CRISPRCasFinder
GCCGCCGTGCCCGTGCCGCCGCGCTGCCGCCGTCGCGCCACCGCCGCCGCGCCACCGCCGCCGCGCCCGTGCCGCCGTGCCCGTGCCGCCGCGCCACCACCGCCCCCC

>NC_013093|5|4|2530584-2530691|CRISPRCasFinder
GCCGCCGTGCCCGTGCCGCCGCGC	TGCCGCCGTCGCGCCACC
GCCGCCGCGCCACCGCCGCCGCGC	CCGTGCCGCCGTGCCCGT
GCCGCCGCGCCACCACCGCCCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015801099.1\|2519122_2519617_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_049796797.1\|2529640_2530525_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_013093.1\|WP_015801104.1\|2523841_2525509_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341278
NC_013093.1\|WP_015801100.1\|2520092_2520635_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NC_013093.1\|WP_015801101.1\|2520728_2521229_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013093.1\|WP_143761105.1\|2530760_2532791_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_143760700.1\|2543823_2546262_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NC_013093.1\|WP_015801110.1\|2535437_2538869_+\|DNA-topoisomerase-4-subunit-A	unknown	unknown	gnl\|CDD\|235503
NC_013093.1\|WP_015801112.1\|2539802_2540360_+\|DUF4291-domain-containing-protein	unknown	unknown	gnl\|CDD\|379483
NC_013093.1\|WP_015801115.1\|2542608_2543472_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NC_013093.1\|WP_015801111.1\|2539015_2539726_+\|xylose-isomerase	unknown	unknown	gnl\|CDD\|224007
NC_013093.1\|WP_015801109.1\|2533374_2535417_+\|type-IIA-DNA-topoisomerase-subunit-B	unknown	unknown	gnl\|CDD\|235501
NC_013093.1\|WP_015801113.1\|2540483_2541632_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NC_013093.1\|WP_085945077.1\|2526280_2529535_+\|cobalamin-B12-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|239650
NC_013093.1\|WP_015801102.1\|2521577_2522549_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NC_013093.1\|WP_143761104.1\|2522602_2523670_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|376643
NC_013093.1\|WP_015801114.1\|2541628_2542222_+\|FMN-reductase	unknown	unknown	gnl\|CDD\|274935
NC_013093.1\|WP_015801105.1\|2525811_2526033_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015801117.1\|2546956_2547448_+\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176904
NC_013093.1\|WP_015801098.1\|2517943_2518825_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015801111.1\|2539015_2539726_+\|xylose-isomerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	0.000447569
NC_013093.1\|WP_049796797.1\|2529640_2530525_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.62314e-16
NC_013093.1\|WP_015801104.1\|2523841_2525509_+\|AMP-binding-protein	gnl\|CDD\|341278	cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
NC_013093.1\|WP_015801100.1\|2520092_2520635_-\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	1.67213e-56
NC_013093.1\|WP_015801101.1\|2520728_2521229_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.76517e-15
NC_013093.1\|WP_015801110.1\|2535437_2538869_+\|DNA-topoisomerase-4-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NC_013093.1\|WP_015801112.1\|2539802_2540360_+\|DUF4291-domain-containing-protein	gnl\|CDD\|379483	pfam14124, DUF4291, Domain of unknown function (DUF4291). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 190 and 214 amino acids in length. There are two conserved sequence motifs: VYQAY and RMTW.	7.19887e-94
NC_013093.1\|WP_015801115.1\|2542608_2543472_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	9.60913e-130
NC_013093.1\|WP_015801109.1\|2533374_2535417_+\|type-IIA-DNA-topoisomerase-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NC_013093.1\|WP_015801113.1\|2540483_2541632_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	0
NC_013093.1\|WP_085945077.1\|2526280_2529535_+\|cobalamin-B12-binding-domain-containing-protein	gnl\|CDD\|239650	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.	0
NC_013093.1\|WP_015801102.1\|2521577_2522549_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.46031e-77
NC_013093.1\|WP_143761104.1\|2522602_2523670_+\|DUF58-domain-containing-protein	gnl\|CDD\|376643	pfam01882, DUF58, Protein of unknown function DUF58. This family of prokaryotic proteins have no known function. Caldicellulosiruptor saccharolyticus PepX, a protein of unknown function in the family, has been misannotated as alpha-dextrin 6-glucanohydrolase.	2.76017e-14
NC_013093.1\|WP_015801114.1\|2541628_2542222_+\|FMN-reductase	gnl\|CDD\|274935	TIGR04037, predicted_flavoprotein, LLM-partnered FMN reductase, CE1759 family. This family represents a distinct clade within pfam03358. That family includes enzymes such as the NADH-dependent FMN reductase MsuE. Members of the present family regularly co-occur in genomes, typically as gene pairs, with members of TIGR04036, a probable FMN-dependent member of the bacterial luciferase-like monooxygenase (LLM) family. At least one member, RF\|YP_001509627.1 from Frankia sp. EAN1pec, is fused to the LLM protein. The function of these gene pairs is unknown.	3.28344e-90
NC_013093.1\|WP_143760700.1\|2543823_2546262_-\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	5.75393e-44
NC_013093.1\|WP_015801117.1\|2546956_2547448_+\|SRPBCC-domain-containing-protein	gnl\|CDD\|176904	cd08895, SRPBCC_CalC_Aha1-like_2, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	4.37986e-58
NC_013093.1\|WP_015801098.1\|2517943_2518825_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	6.2479e-15

>NC_013093.1|WP_049796797.1|2529640_2530525_+|tetratricopeptide-repeat-protein
MSVPGLGADLVEHGCAGWGCSGVVPGSAAWSARSAGRGARACRDCGRVLCASCADRRTRCLPCGGPLIGVARWGRLRVGRPPDAVRLCAQGAALAADGRSVEALTRFDHAIRARPDYVEARSRRAALLVDRGDLDAALVDCDHVLALEPDHPPAWYDRATALTLRGRLPEAVAAYDEAVRRCPRFLAAHVNRAVAVLELGDPERALRLCDEASRLLAGPGDLEGDDATGTHLAGARGACLLLLDRPEEALDALDAAIGDGPGEPNMLRNRALALLRLGRHEEARAAALAARRTP
>NC_013093.1|WP_085945077.1|2526280_2529535_+|cobalamin-B12-binding-domain-containing-protein
MPRNPVRFVTAASLFDGHDAAINIMRRILQSQGAEVVHLGHNRSVREVVDAAVQEDVQGVAISAYQGGHVEYFTYLVDLLRERGAGHVKVFGGGGGVIVPEEIELLHERGVTRIFSPADGQELGLARMINLMVRECDHDLADPARVDRSALRTGSPDALAATITLAEAGRLPGGLRAELEAAASARRVPVLGITGTGGSGKSSLTDELVRRFRLDQQDKLRIAVLAVDPTRRRGGGALLGDRIRMNCLEGDRVFFRSLATRRAGSEVPDGLSDAILACKAAGFDLVVVETPGIGQGDAAIVPFVDRSLYVMTPEFGAASQLEKIDMLDYADAVAINKFERRGADDARRDVARQLVRNREAFGSSWEDMPVYGTSAATFNDDGVTALYQHLRDGLAEHGLQLDEGALPLVGGRVSTAAATVVPASRSRYLAEIAETVRGYHRATETQVDAVRRLAHLEAARAELVAAGHAGPAGQAGSAGQAVGALDELLAGARRRVDGTAAELLETWPSVVADYSGDELVVKVRDRELRTALTRTTLSGNRVRRVALPRHDEPGALLRFLRAENLPGRFPFTAGVFPFKREGEDPARMFAGEGDAFRTNRRFKYLSQGSAATRLSTAFDSVTLYGRDPDTPPDVYGKVGTSGVSIATLEDMRALYAGFDLTAPTTSVSMTINGPAPTILAFFLNTVIDQRVDAFRAEHDREPDEGEREELTAWALANVRGTVQADILKEDQGQNTCIFSTEFSLRMMADVQEWFIRRGVRNFYSVSISGYHIAEAGANPISQLAFTLANGFTYVESYLARGMAIDDFAPNLSFFFSNGMDAEYSVIGRVARRIWAVTMRDRYGAGERSQKFKYHVQTSGRSLHAQEMDFNDIRTTLQALCALYDNCNSLHTNAYDEAVTTPTESSVRRAMAIQLIINREWGLSLNENPLQGSFVIDELTDLVEEAVLAEFDRISERGGVLGAMETGYQRGRIQDESMLYEQRKHDGTLPLVGVNTFLPEHGGGEPVVIELARATEDEKRSQVERTRDFAARNADAAGEALRRLKAAAASGENVFEVLVDAARVCTLGQVTEAFFEVGGQYRRNV
>NC_013093.1|WP_015801105.1|2525811_2526033_-|hypothetical-protein
MTNTPIYDELAAIHLGDGTTGEAPKPAPVPGITSGLTPGLGTPGAGLPVETAEPQSRASTSGGGRRRKPDPQE
>NC_013093.1|WP_015801104.1|2523841_2525509_+|AMP-binding-protein
MDFRQARDFLLQHADDHDAARAGFAWPDLAEFNWALDWFDEIARDNDRTALWIVEEDGSEGRWSFAELSRRSAQVANWLRGNGVARGDRVVLMLGNQVQLWETLLGAMKLGAVVIPATTLLGPEDLRDRIERGGARHVVVTSGDAPKFAEVPGDYTRIAVGAPVDGWLDFADSERADAAFTPDAPTRADDTLLLYFTSGTTAAPKLVEHTHVSYPVGHLSTMYWQGLRPGDVHLNISSPGWAKHAWSNVFAPWNAEATVFVHNYRRFDAARLMAEMDRCGVTSFCAPPTVWRMLIQADLTALRVPPRKAVGAGEPLNPEVIEQVAKAWGVTVRDGFGQTETTVQIANTPGQPVKPGSMGRPAPGYEVVLVDPITGEPGTEGEICLDLSRRPLGLMVGYHGDPERTAEVMRGGYYHTGDVASVDEDGHLTYVGRTDDLFKSSDYRISPFELESVLLEHDAVAEAAVVPSPDPVRLAVPKAHVVLAPGWEPTAETALAVLRHARERLAPYKRVRRLEFGPLPKTISGKIRRVELREQEDGGRPDGEHREEDFPQLRG
>NC_013093.1|WP_143761104.1|2522602_2523670_+|DUF58-domain-containing-protein
MLAAGALHPALAALGLAPVALTCAVFLLAARQVPARPRRTVRPSAVRRLDPCTRTIELTAPGGRLTARFAATECLDGRDVPVRFPVLRPGGTTTAEYPVPTGRRGVLTLGPLVLTRRGPVGLVVSRTELTDLDQVRVAPRVLPVRGMPGRVRRGLVGADELVESDVDPVLRPHRPGDALRGLHWAASARAGGLVVREDAAPTRPRLAVLLDDRAASHPDPAGFEDAVEVAASLLVAAVDEGHPAHLLSAGGALDVELAAHDADLARTGLADVALAPGERDATTVPERDLDVVAAVSGPGADLAALVLEAARASVGVVLVLDAAAVPEVTARGTVLVLRAPSAEGLVDAWNAAVAR
>NC_013093.1|WP_015801102.1|2521577_2522549_+|MoxR-family-ATPase
MTSTATPAIGADEIAAFRELHTRLGDAVATALLGKRDVVDLVLVSLFAGGHVLLEDVPGTGKTTLARAVAAALGGVSRRVQLTPDLLPSDLTGAPVYDPQTGQVRFRPGPVFANVLLADELNRASARTQSALLEVMAEGTVTADGVTHAVPAPFLVVATQNPVDLDGTYRLPEAQLDRFALRTALGYPDAPHELDVLRPGSGAGRVSAVPTVTSPQVVADHGRRLAAVHVPEPVLRHLTDLAATTRTDPRLRLGVSTRGLRSLVRCAQVLAATRGRHTVEPGDVRELVDPVLAHRLQLTRQAQLAGVTTTEVLAEAAAALGDR
>NC_013093.1|WP_015801101.1|2520728_2521229_+|MarR-family-transcriptional-regulator
MSDVRWLSADEQRVWRSFMTAVTRFTEHLDRQLQRDSGMPMAYYEILVALSESEGRALRMSELADLCHSSRSRLSHAVAKLEKQGWVARRACPSDRRGSIAELTDAGFAALAEAAPGHVGAVRSHLFDVLTPEQLGSLDRIGQAISGGLSSECAQVRAEREAEGDC
>NC_013093.1|WP_015801100.1|2520092_2520635_-|YceI-family-protein
MTSTQIPGYLTGSWAIDPVHSDVSFTVRHLGISKVRGHFGTFEGSVVTAENPLESTVTATIDATTVDTRNADRDGHLQSPDFLDTANHPKITFTSTALRAEGEDYFIDGELTLRGVTRPVTLEVEVNGFGDGMSEGSKVAGFTATTSISRKDFGVTGGAAGAVVSDKIEIKLEIELAKQA
>NC_013093.1|WP_015801099.1|2519122_2519617_-|hypothetical-protein
MNAKTEQVDDIRLVALPTAVNVAEMFVRFSLSEWRLSAMQDEAGQTARRLVAAAVEVADQSQPGFLLVRLRLTGQHLAVELEADRVAMPPELAGSRAGLVDLTVGGRLAWCELGLPSGMNASSVPLPRREPRRSPAAERLGDEPDVDPAVIQRILHGLGGQHGE
>NC_013093.1|WP_015801098.1|2517943_2518825_+|EamA-family-transporter
MPSHARPNHPLHGPLPILAACALWGTTGTAGSFAPASAPAIAVGSAGLVVGGLLLLLTGIGAGAREVLATADRRLLLLGSATVAGYALAFYPAVARTGVAVATTVALATAPIVLGVRARPALTLTAVLGCALLVLGGATGDTRIDPLGVALAVVAGLSYAAYSAVCAHLISLGHPSRAVVGVVFGGASALVLPVLLLAGVSWIASTAGLAVVAHLAVLTTFLSYLLFGYGLRRTTAAAATTLTLAEPAVAAVLGVVVVGERLPWVSWAGMAVLAVALAALTRAPRTPETITTG
>NC_013093.1|WP_143761105.1|2530760_2532791_-|hypothetical-protein
MSPASSAYAPEPAYPQQEEPEPFTTSFAGAALVIGQPSGVTASATHLARSLPVERGRTVVVVDVPPAEEAAFWPAVAVALQGRGPVRLVVSHAGSMRPTAPAQWLADQLQAEVVAPDGALAIVPGVVFVTGTGGGYGAWLRFLPGASPTPVGRRFPVPQWEAVDPNSPWPTGEVGISEPIPSGLWLRAQRVAFDPNSPEARAVLSLPCRDNVLTVVVGGPGQPPIPVEEVCRLIGGLPTAARTRVRLVWFGGEHAAQSVADQLGEPVALYTGLPVGMLRMGASVVAVNPQGQPTWRPYVTEVAYRPGSGPLVAAYRPPVHGLVERAPGVFDLGGGVVLEVVPSGLWVHDAEDGTTTEVRALPVDPEWARLTVGTPGRTTAGAVAVAGASLVERLEPEVRRLLKVVFCDPTPMPRPPVAEEPPEPSVPEVPVPLSVDGPLPAPVSPTWEEQSGEETVPPEHRSTEMERDALRRMMGERYGEHAAVACRHLAERPSDPEAFEAVVTDLAAVSAFLTQDHELLTEAFRTGRLGRLWPHAAGVVSGLRRLPVHQGVTVGWGEARRLRTGDLLTDAAVLSTVAGPSMPVDGRVEFVVWSTTGRRVTVVDSFGSVLQERVLFAPGTVFKVLAVVEPEETTPMQVMLQEVVGRSQDLPPGVLGTLERAAMALRAQARDRAGAR
>NC_013093.1|WP_015801109.1|2533374_2535417_+|type-IIA-DNA-topoisomerase-subunit-B
MTAEILYGADDLTHLEGLEAVRKRPGMYIGSTDSRGVNHLFSEVIDNSTDEGVAGHATRITVTLHPDGSVQVDDDGRGIPTGVHAKSGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVNALSHRYDVVVRREGKTHEMSFAHGVPGVFDGPGPKAAFTRQSGLRVTGRTRKTGTSTRYWHDSRYFENGAALDHEAVRAKLRNTAFLVPGVTYVLRSAVDGKIAEEVFHYPGGLADMVDFLAPSSEKAVTGTIVITGEGVYHENAADENGVMRSKVERHAEVEIALRWGTGYERTVECFTNTIRNVHGGTHRRGFERAVLKSVQEAIGRTRGLLKPKEDPPTLDDVLEGMTAVVHVRVPEPQFTSQTKDELSTAGVTRVVLALVDKHVKAWTEDRRTKAEAKVVLQKVVDAARVRLTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVARSELFLVEGDSALGSARMARVSEYQALLPLRGKILNVQKASLADTLRNAEIASIVQVLGAGTGRTFDLSTMRYGRVILMADADVDGSHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKVVTKGRNAETHFTFTQREMEQKVARLERAGKTVVKPVPRFKGLGEMDAEELWDTTMNPATRSVRRITLADVEAAEAALELLMGEKVEPRRAWLVASAARVDQSAIDV
>NC_013093.1|WP_015801110.1|2535437_2538869_+|DNA-topoisomerase-4-subunit-A
MARRKGPVTRVDPSAFDSAGAKVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKSSRVVGDCFVRGALVSTPSGVRPIEEIVVGDHVLDPAGAPVRVAQVYENPVSELVRVTFSDGRTILVTPGQRFRVHAAGDAGAAGVEWVAARDLVGRHAVAFGPGRASALLGEGDQYAHVLGLLASAGVDGQRLRLTDEGPADAVHGWAIAANVAVTRDKLPAEGPGGRDVHVLDLDGHVGVRAAVASGAAPAAVLLQRGRWAAFLAGVFDGAGSVRDGEVVLGVRTALLAEQVGALLADCGLPATRADGEIRLSGGAAATLGAVLLPWARSDAEQDLRELTGASQAPAPEVVSVEPVAPDTTYDIQVDADEHAFVVDGLVVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPDDGPAASRYTEARMSGAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNLGEVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLLGLDEVRKAYETGRGVVRMRATVTTGPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLAHRYEVVTRRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVSTFALSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVLRRVVSNELGKVAKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSATGLVARTAAESEEAVEGRKRSGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVLPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGETDSPGLALGTKQGVVKVCAPEWPVRSDEFEVIGLKAGDEVVGAQWLADGQEALVFVSSEASLLRYAASLVRPQGLRGGGMAGITLPGEASVVFFGAVRTDDAEHGEPVVVTSTGQSVKVTPFDLYPAKGRATGGVRAHRFLKGEDGLVLAWVGARPAAVTESGAAVELPEIDPRRDGSGAPHPGPDVIGHLVERA
>NC_013093.1|WP_015801111.1|2539015_2539726_+|xylose-isomerase
MITAGLASVGFPDRPLAEVVELALGARAGAVAWGGDVHVPAGDLVAAERAAALSEAAGLVVGVYGSGYRAGCDDPEEFAAVLDSAQSLGAPGVLVRAGGVAPWEATVGAWSFVVAELRRCVRLAAERDLVVVAEHSATSLFGTLESALRLLAAVPGLAAHWRALGGSGAVLAEVSALLPSLVVLSCGAGDPGASAALELLARDGGARMALLEPASGDATAVVRDGRALLALLERRS
>NC_013093.1|WP_015801112.1|2539802_2540360_+|DUF4291-domain-containing-protein
MAPQRQIRADYDDSHITVYQAYSSAIADPALAAGRFVPPFSFGRMTWVKPSYLWLMHRSNWARKPGQERVLAVRITRAGWERALAQAVLTGSPGLEGARVHVQWDPERSLRGAALNHYSIQVGVGRDVVRELVDEWTTGVADLTGRTRRIAALLQAGRAEQARRLLPPERPYPLPVAIATRLDAG
>NC_013093.1|WP_015801113.1|2540483_2541632_+|LLM-class-flavin-dependent-oxidoreductase
MQFGVFTVGDVTPDPTTGRVPTEGERIKAMVAIALKAEEVGLDVFATGEHHNPPFVPSSPTTMLGYVAARTEKLILSTATTLITTNDPVKIAEDYAMLQHLADGRVDLIMGRGNTGPVYPWFGKDIRDGIELAIENYHLLRRLWREDVVDWEGKHRTPLQSFTSTPRPLDGVPPFVWHGSIRSPEIAEQAAYYGDGFFANHIFWPKEHFMRLINLYRARFEHYGHGKAHQAPVGLGGQVFIRPKSQDAVNEFRPYFDNAPVYGHGPSLETFTEQTPLTVGSPQQVIDKTLTFREHFGDYQRQLFLVDHAGLPLKTVLEQLDQLGEIVPELRREFAAKRPADVPEAPTHQSLLAAKTAADSAARSAAASAAVPTVETGKESVR
>NC_013093.1|WP_015801114.1|2541628_2542222_+|FMN-reductase
MTRIAVVSAGLGEPSSTHLLADRLAAATSAALAGPVVTTTAHLRDVARDVADNLVTGFAGPKLRAVIEDVVGADALIAVTPTFNASYSGLFKSFVDVLEPTSLAGKPVLIGATGGSERHSLVLDHALRPLFAYLKAVVLPTGVYAASADWGVGSGLVGRIDRAGAELADLLAGRAPAAQADPYADVVPFERLLAGDR
>NC_013093.1|WP_015801115.1|2542608_2543472_+|ATP-phosphoribosyltransferase
MASLRFALPNKGSLSEPAARMLSEAGYRVSRSGRELIVADKANGVQFFFLRPRDIAVYVGEGSLDVGITGRDLLLDSTIAADEILPLGFGRASFYFAGVPGAISDVSELAGRRIATSYPKLVRRHLEDQGIKADLVRLDGAVETAVELGVADAIADVVETGITLKTSGLATFGDPILRSEAVLIQRDATRVDAETAEAVEVLVRRLKGVLIARSYVILDFDCPTSAQEEAFKLVPGIEAPTVSPLAREGWVAVRSLVPRHDAPKIMDQLWNVGARAILVSSLDTCRI
>NC_013093.1|WP_143760700.1|2543823_2546262_-|EAL-domain-containing-protein
MTVPLSREAEALRERAELAGTWAGLLAGHSGGRVPGQVLERALLGEVERLCAGALGIGDGDEDDVEDDPDGAGPGVARGSADLAVAAGRTTGGVLAELTENPEALRVTLELLSTGLPGLATLSAVGSRVPSVLAALAAGFAEQAVAHGAARSARTPRPRRESVPLATPRGTAVRVPVDGPPTAPPAPAAPEDPDEDDTDQEPHHCSPADDDVDDLSDAEAGGEPPTGARTAPDAPDHHPVDSASSAGPDRTGAAPPDDDLPRGPAAGPPVAESVLLAAKARIVEEAARIGVASVTFEGSVLEANDALADILNRAHGTLTGVDLLELVHPADRGVVVADLAGLACGGTSALSGQRRLVRPDGEVAWAALTTAPLRPPGREPYAVVVVEDRTDVSLLQGQLNHQSLHDVLTWLPNRQYFTSRLERALRTADPATGVTVYHLDLDGFSRINGGLGRAVGDHVLKTAASRLFEAVPGENAMIARFGADEFAVLVENVAGTPDVVTTVRRINERLGEPLEVAGQEIALSATIGVVHRPAPGTPPAELLEAADLALRRARGLGSRQWALADPELDGVDRRDFTLAATMPGAWRRGELEVRYRPVVRLADAEVVAAEAVLRWRHPVLGVLPHGRCARLAEETGFAVPLGALVLRAACERAAEWARDGAELPVRVALSGEQAADQDLVGSALRALEETGLPRRLLRVAVPARVLFERDEAADNLRVLADAGVGAEVDDFPVAPGELAALEAFPVRAVRVRAGLEVTHPSAVKALTELLGVLREAGVEVSVDGLTTAERSRWWREVGAETGAGPLFPKRVR
>NC_013093.1|WP_015801117.1|2546956_2547448_+|SRPBCC-domain-containing-protein
MTTTRVQRTVRAPRAAVYRALLDGEAVGRWMVPNGMSSEVRAFDAREGGEFRISLTYDDPSTTAGKTSDRVDSYGGRFTRLVQDTEVVQVVEFDTDDPDTAGEMVLTFTLVDVEGGTQVTGVHENVPPSVRPEDNEHGWTMSLGKLAALVEEREQERQQRGNA

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Crispr_ID: NC_013093_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_6

6198106-6198212

Orphan

Consensus_repeat	Method
CGGGAGCGCGGACTGCGGGCCGG	CRISPRCasFinder

2 spacers

WYL

The CRISPR arrays of NC_013093_6

>merge|NC_013093|6|6198106-6198212|CRISPRCasFinder
CGGGAGGGCGGCCTGCGGGCCGGACTGGGGGAAACCGGCGGTCGGGAGCGCGGACTGCGGGCCGGTCCGCGGAAACCCGGTCTGTGGGAACCCGGCCTGCGGGAGCG

>NC_013093|6|5|6198106-6198212|CRISPRCasFinder
CGGGAGGGCGGCCTGCGGGCCGG	ACTGGGGGAAACCGGCGGT
CGGGAGCGCGGACTGCGGGCCGG	TCCGCGGAAACCCGGTCTG
TGGGAACCCGGCCTGCGGGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015803915.1\|6204628_6205039_-\|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl\|CDD\|239550
NC_013093.1\|WP_015803903.1\|6192372_6192606_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NC_013093.1\|WP_015803919.1\|6208807_6209761_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NC_013093.1\|WP_015803910.1\|6198661_6199648_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NC_013093.1\|WP_015803918.1\|6208246_6208744_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015803913.1\|6201571_6203521_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_013093.1\|WP_015803900.1\|6189581_6190907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_013093.1\|WP_015803901.1\|6190951_6191893_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226406
NC_013093.1\|WP_015803905.1\|6193486_6194653_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_013093.1\|WP_041837022.1\|6191976_6192321_-\|RNA-polymerase-binding-protein-RbpA	unknown	unknown	gnl\|CDD\|379162
NC_013093.1\|WP_015803904.1\|6192699_6193485_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_013093.1\|WP_187313574.1\|6188025_6189195_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_013093.1\|WP_049797187.1\|6200687_6201545_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_013093.1\|WP_015803907.1\|6196042_6197023_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370676
NC_013093.1\|WP_015803916.1\|6205918_6206410_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015803911.1\|6199638_6200691_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NC_013093.1\|WP_015803906.1\|6194672_6195677_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_013093.1\|WP_015803898.1\|6186628_6187408_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|376480
NC_013093.1\|WP_015803914.1\|6203862_6204378_-\|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl\|CDD\|239550
NC_013093.1\|WP_041838354.1\|6206690_6208247_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015803915.1\|6204628_6205039_-\|Rieske-(2Fe-2S)-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.33879e-19
NC_013093.1\|WP_015803903.1\|6192372_6192606_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	2.11955e-12
NC_013093.1\|WP_015803919.1\|6208807_6209761_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.08577e-43
NC_013093.1\|WP_015803910.1\|6198661_6199648_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	5.02329e-127
NC_013093.1\|WP_015803913.1\|6201571_6203521_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_013093.1\|WP_015803900.1\|6189581_6190907_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	3.51706e-06
NC_013093.1\|WP_015803901.1\|6190951_6191893_+\|hypothetical-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	3.51779e-05
NC_013093.1\|WP_015803905.1\|6193486_6194653_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_013093.1\|WP_041837022.1\|6191976_6192321_-\|RNA-polymerase-binding-protein-RbpA	gnl\|CDD\|379162	pfam13397, RbpA, RNA polymerase-binding protein. RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.	2.48258e-53
NC_013093.1\|WP_015803904.1\|6192699_6193485_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84326e-141
NC_013093.1\|WP_187313574.1\|6188025_6189195_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.03646e-31
NC_013093.1\|WP_049797187.1\|6200687_6201545_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	6.05854e-166
NC_013093.1\|WP_015803907.1\|6196042_6197023_-\|hypothetical-protein	gnl\|CDD\|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	7.31703e-07
NC_013093.1\|WP_015803911.1\|6199638_6200691_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.04245e-97
NC_013093.1\|WP_015803906.1\|6194672_6195677_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NC_013093.1\|WP_015803898.1\|6186628_6187408_+\|6-phosphogluconolactonase	gnl\|CDD\|376480	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.	5.41619e-81
NC_013093.1\|WP_015803914.1\|6203862_6204378_-\|Rieske-(2Fe-2S)-protein	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	1.05199e-24
NC_013093.1\|WP_041838354.1\|6206690_6208247_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000432556

>NC_013093.1|WP_015803907.1|6196042_6197023_-|hypothetical-protein
MSTPPARADESPAPQSPDENPVTGEQPVTAAPAQAPAAPVVVAQIPGHGPVYAQYPQAPPPVEPHPGPYPGQYPYYPGQPPHQGRPPHPGPHGHAPSGFGAPPPPRPADRGGVVAVVGFVLVLVLGMLAVAVSADRGSERRARDEQPITFTLPPVQAITPPPIIATEPPTGRVQAQIGARMSPECDLADALLERAKTRNRAEGRSDSYFANCDYRTLADADTGYRELQVTVGAFDYPDIRNDWFDEEYGRRWDEVRELPGVGERAKVMLRPTDRSGDMVTIKVVSGVRIYEVVYGGTVRDSYLADPIPAAEAEAIAMEVLQAVMAR
>NC_013093.1|WP_015803906.1|6194672_6195677_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVRVGVNGFGRIGRNFWRAVQASGHDIEIVAFNDLGDVNTMAHLLKYDSILGRLDAEVGVNDEGIVVDGKTIKALAERDPGKLPWKDLGVDVVVESTGFFTDATTARKHVDEGGAKKVIISAPAKNEDLTVVFGANEGLYDGTQTVISNASCTTNCLAPLAKVLHDEFTIERGLMTTIHAYTQDQNLQDAPHNDLRRARAAALNIVPTSTGAAKAIGLVLPELKGKLDGYALRVPVPTGSATDLTVTVGRETTVDEVNAAFKKAAEGSLKGYLRYNTDPIVSADIVTDPASCIYDAPLTKVIGNQVKVVGWYDNEWGYSNRLVDLVNLVAGKL
>NC_013093.1|WP_015803905.1|6193486_6194653_-|phosphoglycerate-kinase
MKTLGDLIAEGVSGRRVLVRADLNVPLDGSRITDDGRVRASVPTIKALVDAGARVLVAAHLGRPKGEPDPQFSLAPVAARLGELLGQTVEIGTETAGDGTVVLLENIRFDARETSKDAAEREALADELAAKADAFVSDGFGVVHRKQASVYDVAKKLPHYAGGLVLAEVEVLRKLTDDTRRPYVVVLGGAKVSDKLGVIENLLTKVDRLLVGGGMAYTFLKAQGHEVGKSLLQEDQIDKVKGFLAEAEKRGVELLLPVDFLAATGFSADADHTVVAFDEIPADRECLDIGPASRELFASKLADAKTVFWNGPMGVFEFEKFSGGTRAVAEALIASEAFTVVGGGDSAAAVRSLGLPEDGFSHISTGGGASLEYLEGKELPGVSVLEED
>NC_013093.1|WP_015803904.1|6192699_6193485_-|triose-phosphate-isomerase
MARTPLIAGNWKMNLNHLEAIALVQKIAFALPEKYYAKVEVAVLPPFTDIRSVQTLVDGDKLLLKYGAQDLSPHDSGAYTGDISGVMLAKLGCSYVTVGHSERRDYHGEDDATVNKKVKAALKHGITPIFCLGEKVDVREKGEHVAFCTDQLVAGLKGLTAEQVRGVVIAYEPVWAIGTGKVASAADAQEVCSALRVKLAEAYGEDVASEVRVLYGGSVKSGSVGELIAQKDVDGALVGGASLDGDEFSKLCALAAGGPLP
>NC_013093.1|WP_015803903.1|6192372_6192606_-|preprotein-translocase-subunit-SecG
MNTFLQILLIVSSLLLILLVLLHRGRGGGLSSLFGGGMQSSLSGSSVVEKNLDRLTLFVGAIWVIAIVGIGLIQKVA
>NC_013093.1|WP_041837022.1|6191976_6192321_-|RNA-polymerase-binding-protein-RbpA
MAGGNAIRGTRVGAGPMGESERGESAPRRRVSYWCANAHESRPSFAVEADVPEMWDCPRCGLPAGRDEQAPPAPPRNEPYKTHLAYVKERRSDADGEAILEEALTKLRRQREEP
>NC_013093.1|WP_015803901.1|6190951_6191893_+|hypothetical-protein
MRTAGTLSVLAVLAYALSTLVTAPVALAQGSLGMSVSSGKPGTGFSVQWTGLRVTCHNYSVQVVWDGGVVIGNGGVGWSGSGSTWAVVPSTAKPGRHQVTARTVCPSPSTASGSFTVTGGETSQQQPPPQEEDDPKPPRTSEQAPPPAAPTTTTTRPSTTTTTTTTTTTSTTTATSAPSSPASEPSSAVPHGDGVLVIDKDDVQPGDPLSATGTGCTPGASVTLSSLGEQVGSTTADDAGRFSAPVEFPTAQAGRHEIRAYCGIVLVGSVNVVVSSSTGGVLPAVLGVSGVALAGGLVLLRQFRGFRRVRSGA
>NC_013093.1|WP_015803900.1|6189581_6190907_-|hypothetical-protein
MGRVVPLLLCGMFLAGAPALAQGDSATMTASVDGQQFGDNRVVLDPSGSRKVAVTVHNGSAETRQARVIRLSGGAFGLEFFSYETTVPFEVPGRTSVTRAFVLDMAGLEGKATGLVPVRLELLDDRREVIASRGSTADVRGSVLSVYGVAGLVLLVLAVAAWSAALWAAVKGVLPPRRSRRALQFVPAGVATGLAAVVWSSVLRVLTPQPAVAAVVVVVLVVAAMVVGYLAPSQQAVARAEEDGAGSSGPVPAVVRGAEDDGAQGGAQGVRRGGAGETATIAPVGGGGEESAGAQADGARGASGGAAGQPGHAGQQGHAGGGPAAGAQPGGGQAAPARPGAPVVPAQGGPGGAAAQSGPQPGAGRQVPAQGGDQATTKFQAVQVAPTKPVVQTAPAEITSPADSEATQRIRPVGTPMQAPTPGSAEATQRIRPVGDQGKRR
>NC_013093.1|WP_187313574.1|6188025_6189195_+|sensor-histidine-kinase
MRALVGPRGHLVLDVAAVAVAALDVWLRVLPEAEGYSRVLSGVAVLAVVFRRRCPFLVVLLTIPGFLFGWSQLAAMIALGTLAWLRPRSAQTAVGAGLVWFSRFFLWPVDEFLALPWTAHVHDAIYGGIVAGMPVAIGLLAHVRAELSARVRELAAGRERERALHARAVRADERARLAREMHDVVSHQVSLIAVQAGALRVSVRDPDAKQVAGNIRMLSTRTLNELRELVSVLRAADEPPQPGVADLPQLLLGTDVSLRVDGPVRDLPGPVSGAVYRTVQEALTNVRKHAEGASAAVVVVSDGERVSAEVRNGAPPDRGCAGLPSGCHGLVGLRERAALLRGRFHAGPTDDGGFVVRVDFPLDAGCDGAEGTTGEAVTGSDPVGATGRG
>NC_013093.1|WP_015803898.1|6186628_6187408_+|6-phosphogluconolactonase
MSEPEVVVHRDGDLLAAAAAARLVTRLVDAQAARGSASVVLTGGRTGVAVLEQLRRAPARDAVDWGKVDLYWGDERFLPAGHAERNETQARAALLDHVPVDPARVHVMEPSDGRFGDDPEAAAAAYADELAAAARPEDHGSVPQFDVCMLGVGEEGHVASIFPDSPAVHELERTVVAVRNCPKPPPTRVSLTLPAIRRAREVWLMTTGAGKAAAVAMGLAGAGEVQLPAAGAVGQRRTLWLLDSAAAAKVPELFTPPLA
>NC_013093.1|WP_015803910.1|6198661_6199648_-|DNA-binding-protein-WhiA
MAMTSAVKDELSRLAVSKTCCRRAEVASLLRFAGGLHIVGGRVVVEAELDLGSTARRLRREIHELYGHQSDVFTITSSGLRKGTRFVVRVVKDGEGLARQTGLLDPRGRPVRGLPAPVVSGGVCDAEAAWRGAFLAHGSLTEPGRSSSLEVTCPGPEAALALVGAARRMGIGSKSREVRGAERVVIRDGDAIGAMLTRLGAHDSVLAWEERRMRREVRATANRLANFDDANLRRSARAAVAAAARVQRALEILGAEAPDHLAAAGQLRLAHRQASLEELGQLSEPQMTKDAVAGRIRRLLAMADKRARDLGLPDTESAVTADMLEAEV
>NC_013093.1|WP_015803911.1|6199638_6200691_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MSLSAVALGGGHGLHATLTALRRLTDDVTAVVTVADDGGSSGRLRRELGLLPPGDLRKAMVALADDDASSALWSTLFQHRFGGTGALAGHAVGNLVLAGLLEQLGDPVAVLREAGRLLGVRGTVLPMCTEPLEIEADVTGLDEDDDEVRRIRGQVAIATTPGRVQRIRLHGPGRPSEPPRGCPEAVRAVLDADVVLLGPGSWFTSVLPHLLVPELHDALVRTRARKVVVLNLVPQPGETEGFSPELHLDVLSEHAPGLRVDAVVADADSVPVPDRLRRAAAALGAVAHLSGVAVPGAPDRHDSAALAESIRRALAGAGEDGADPSSTTLRESSATQREQSESRGGPQPWR
>NC_013093.1|WP_049797187.1|6200687_6201545_-|RNase-adapter-RapZ
MEVAVVTGLSGAGRSTAAKCLEDLGWFVVDNLPPELISTMVELGAQARGAITRVAVVMDVRSRAFTDDLAAVIKDLDARGYKPKVLFLEATDDVLIRRFESVRRGHPMQADGRLADGIEAERVLLTPLREEADLVLDTSALSVHQLRAKIEDTFGTESATRTRVTVLSFGYKYGLPMDADLVMDVRFLPNPFWIPELREQTGLDGEVRNYVLTQEGAEEFLDRYHELLRLIGAGYRREGKRYLTLAVGCTGGKHRSVAISEELAGRLATEDGMAVKVVHRDLGRE
>NC_013093.1|WP_015803913.1|6201571_6203521_-|excinuclease-ABC-subunit-UvrC
MADPSTYRPAAGSIPEAPGVYKFRDPTGRVVYVGKAKNLRSRLNSYFADLSGLHPRTRQMVTTAASVEWTVVGTEVEALQLEYNWIKEFDPRFNVRYKDDKSYPMLAVTLNEEIPRLHVYRGPQRRGVRYFGPYPHAWALRETLDMLLRVFPARTCTGGVFKRHEQMGRPCLLGYIDKCSAPCVGRVSPDEHRAIVGEFCDFFAGRTDGMVRRLEREMNAAAEELEFERAARLRDDLSALRRAVEKQAVVLGDGTDADVVAFATDDLEVSVQVFHVRGGRVRGQRAWVVDRENSEGVPALVDRFLTQFYGGQAEAAGAAAEDAAPVPREVLVPELPDDAPALERWLGGLRGTKVGLRVPQRGDKRDLMATVERNAKEELQQHKLRRAGDLTARSAALQELQDALDLPSAPLRIECVDISHTQGTDVVASLVVFEDGLPRKSEYRRFALREAATEGDVASIAEVVRRRFQAYLKETAEAGDDAKPGIDPETGKPRRFAYAPNLLVVDGAGPQATAAAGVLAELGIENVAVVGLAKRLEEVWLPDDPDPTILPRTSTALYLLQHLRDEAHRFAIAYHRQKRSKRMTASELDDVPGLGQTRKAALLKHFGSLRKLREASIEEISGVPGVGRRTAEAVRARLGAAAGTEGERT
>NC_013093.1|WP_015803914.1|6203862_6204378_-|Rieske-(2Fe-2S)-protein
MTTTDPGPLSRRRVLCGVLVALAVPGGLAACGDGGSSSSAPTTGSTGTGGGATTGGASTPATSATGGSATSGGQSLVALADVPDNGGVVVDGPKGKPLVLVRTGGEVKAYDATCPHVGETVGAPKDGTITCPAHGSRFDASTGEVTNPPAQRGLTAVQVAVQGDQVVYVGP
>NC_013093.1|WP_015803915.1|6204628_6205039_-|Rieske-(2Fe-2S)-protein
MDRRTLLCGLLALTTPVVATACGPGAPTRRPGVGSGKPGDRIAALADVPVGGGALVDVSTDGQLLLLRPAETELRAFNPACPHAGATVNPPTGGSVACLAHGSTFDPATGEVRSGPAKQDLTEVPVRVMDQDVLLA
>NC_013093.1|WP_015803916.1|6205918_6206410_-|hypothetical-protein
MTVTTTAHSTNPRPRPRDRAHQQALGEAIAGYRLLGWKVSVTEQGVFLPLGPATTALAMPARIGSRVLADLKARMLAGPVTVIPGPREHWIFLAELVALLPTHLKAPPEVQFVRSPQRIALPPTMTRYGSLRWANPPSHSRHWFPPFTAVLALARSAAAQDER
>NC_013093.1|WP_041838354.1|6206690_6208247_+|helix-turn-helix-domain-containing-protein
MEANGRRATSTRRACPSCGALIAADNSDRLCHRCRRNARADIYGPPALTEEFWDHPVLASAFAARDMGAVLAAYRHHPQHVSRITQDRMATWLGISQAQLSRYETGENPIDRIERLRHFARALSIPGDRLWFDRVGIPSQAAPERGAPPDVLVAAWDASSIARSVEETARSDLAISRRAALTGAAAVTMGPTLVEPLQRWLHPLQPLTRWSSSAAISEEELAALQHVADGLRGWGGRGGYGLARKAVLGQLEELAERLTRAPAGPTTERAFFIGAELSKVAASMSWDAGMHDAAQRYYVLGVRMAKAGHNDAFAALCLAAMARQMFDLGRPEDGLDLVQLAQYGTRRKATPTLQALLLTREAWAYAQLGRVKEFHRAVGQAQDSFAQREHGSEPWWLQSFDEAELEGVIGARLRDLAAHDPSQALLAEKHILRALELRDPARVRNRAFDVIGLARTKMAAGDPEAACGLIQQVLPTAVGLASGRVVRKLQDFAKEAERHRELPLVRDTREAIRGVRTA
>NC_013093.1|WP_015803918.1|6208246_6208744_+|hypothetical-protein
MRVGITGHSNLAPECVDEVGAGIRAALDAALEDEAAGGSSLVGVTCLAAGADQLFARVVLGMGGEVEVVLPAADYRDKIKPHNLAEYDELLGRATVVSVLPNEVSGRYAYVMANERMLASVDFVVAVWDGLPSGGKGGTGDVVEHAVASGVPVVVVWPPGARRKS
>NC_013093.1|WP_015803919.1|6208807_6209761_+|WYL-domain-containing-protein
MLETSARLLRLLSLLQVRREWSGPELAGRLGVGVRTVRRDVDKLRSLGYPVSSLPGAAGGYQLGAGAELPPLLLDDEEAVAVAIGLRTAAGGTVHGIEESSVRALAKLEQVLPSRLRRRVAALQRHTVSLAAPAVRVDANALAVIAGACRDAQRLRFGYRGKDGAGSRRHVEPFGLAHTGWRWYLVAWDVDRADWRTFRVDRFEGEPALGGRFPRREAPAEDLVAYVSEQLAVAPYEHRAELVVHAPHEEVAARVSRTSVSITPIDERTTRVVMGASSVVELGMWVGVLGFEFTLVGSPELAQHLRVLGERFGRAVG

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Crispr_ID: NC_013093_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_7

6295356-6295930

Orphan

Consensus_repeat	Method
ACGGTTGAACGGTCCGTTCAACCG	CRISPRCasFinder

11 spacers

The CRISPR arrays of NC_013093_7

>merge|NC_013093|7|6295356-6295930|CRISPRCasFinder
CCGGGTGAACGGCCCACTCACCCATGGTTGAACGGTCCGTTCAACCGAGAGCGAGCAAGCTCGCCGGTTGAACGGTCCGTTCAACCGAGTTCGAGCGTGGGTACGGCGGTTGAACGGACCGTTCAACCGGGTTCAAGGATAGGCACGGCGGTTGAACGGACCATTTAACCGAGCACGAGCGCAAGCACTGGCACCGGCCTCAGCAGCGGTGGTTGAACGGTCCGTTCAACCGGGTTCGAGCATGGGCATGACGGTTGAACGGTCCGTTCAACCGGGCTCAAGCACAGGCATGACGGTTGAACGGACCGTTCAACGGGGCTCAAGCACGGGCATAACGGTTGAACGGACCGTTCAACCGCGCCCCGCTGAACGGTCCGTTCAACCATGCCCAGTTGACATGCCCAGTTGAACGGGCCGTTCACTCACCTCCAGTTGCTCACACGCAGTTGAACGGACCGTTCAACCATGTGTAGGTGAGCGGGCCGTTCACTCACCCCCTGGTTGAACGGTCCGTTCAACCAGGGGGTGAGCGTGAGCGCAGGTACGGGCTGAGGGGTGAACGGACCGTTCAACCG

>NC_013093|7|6|6295356-6295930|CRISPRCasFinder
CCGGGTGAACGGCCCACTCACCCA	TGGTTGAACGGTCCGTTCAACCGAGAGCGAGCAAGCTCG
CCGGTTGAACGGTCCGTTCAACCG	AGTTCGAGCGTGGGTACG
GCGGTTGAACGGACCGTTCAACCG	GGTTCAAGGATAGGCACG
GCGGTTGAACGGACCATTTAACCG	AGCACGAGCGCAAGCACTGGCACCGGCCTCAGCAGCG
GTGGTTGAACGGTCCGTTCAACCG	GGTTCGAGCATGGGCATG
ACGGTTGAACGGTCCGTTCAACCG	GGCTCAAGCACAGGCATG
ACGGTTGAACGGACCGTTCAACGG	GGCTCAAGCACGGGCATA
ACGGTTGAACGGACCGTTCAACCG	CGCCCCGCTGAACGGTCCGTTCAACCATGCCCAGTTGACATGC
CCAGTTGAACGGGCCGTTCACTCA	CCTCCAGTTGCTCACAC
GCAGTTGAACGGACCGTTCAACCA	TGTGTAGGTGAGCGGGCCGTTCACTCACCCC
CTGGTTGAACGGTCCGTTCAACCA	GGGGGTGAGCGTGAGCGCAGGTACGGGCTG
AGGGGTGAACGGACCGTTCAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015804004.1\|6297233_6298163_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NC_013093.1\|WP_015804001.1\|6293797_6294367_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013093.1\|WP_118948481.1\|6291205_6291490_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_013093.1\|WP_041837037.1\|6300293_6301517_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375603
NC_013093.1\|WP_015803995.1\|6290126_6290963_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NC_013093.1\|WP_015803998.1\|6292019_6292427_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341119
NC_013093.1\|WP_084799024.1\|6301594_6303055_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|237218
NC_013093.1\|WP_015803997.1\|6291486_6291816_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380457
NC_013093.1\|WP_015803993.1\|6286241_6287723_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237408
NC_013093.1\|WP_015804011.1\|6307214_6307934_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|226406
NC_013093.1\|WP_015804012.1\|6308100_6309090_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176196
NC_013093.1\|WP_015804007.1\|6299538_6300297_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375611
NC_013093.1\|WP_015804000.1\|6293170_6293743_-\|isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235156
NC_013093.1\|WP_015803994.1\|6287964_6289797_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NC_013093.1\|WP_015804002.1\|6294443_6295292_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_013093.1\|WP_015804010.1\|6303142_6306604_+\|TM0106-family-RecB-like-putative-nuclease	unknown	unknown	gnl\|CDD\|274603
NC_013093.1\|WP_143760897.1\|6292426_6293110_-\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627
NC_013093.1\|WP_041837036.1\|6299043_6299460_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373064
NC_013093.1\|WP_015804005.1\|6298309_6299056_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373062
NC_013093.1\|WP_187313446.1\|6296165_6297053_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176237

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015804004.1\|6297233_6298163_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	2.72106e-35
NC_013093.1\|WP_015804001.1\|6293797_6294367_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.8793e-05
NC_013093.1\|WP_118948481.1\|6291205_6291490_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.56046e-26
NC_013093.1\|WP_041837037.1\|6300293_6301517_-\|hypothetical-protein	gnl\|CDD\|375603	pfam18171, LSDAT_prok, SLOG in TRPM, prokaryote. Family in the SLOG superfamily, fused to or operonically associating with SLATT domain in diverse prokaryotes. Predicted to function as ligand sensor in conjunction with the SLATT transmembrane domain.	3.06742e-52
NC_013093.1\|WP_015803995.1\|6290126_6290963_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	1.72221e-36
NC_013093.1\|WP_015803998.1\|6292019_6292427_-\|hypothetical-protein	gnl\|CDD\|341119	cd17036, T3SC_YbjN-like_1, T110839 is structurally similar to type III secretion system chaperones and YbjN family proteins. This family includes protein T110839 from Synechococcus elongatus that is structurally similar to type III secretion system (T3SS) chaperones (T3SC) that bind effector proteins, and is homologous to YbjN, a putative sensory transduction regulator protein found in Proteobacteria.	0.0013363
NC_013093.1\|WP_084799024.1\|6301594_6303055_+\|SDR-family-oxidoreductase	gnl\|CDD\|237218	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	1.71443e-14
NC_013093.1\|WP_015803997.1\|6291486_6291816_-\|hypothetical-protein	gnl\|CDD\|380457	cd19534, E_NRPS, Epimerization domain of nonribosomal peptide synthetases (NRPSs); belongs to the Condensation-domain family. Epimerization (E) domains of nonribosomal peptide synthetases (NRPS) flip the chirality of the end amino acid of a peptide being manufactured by the NRPS. E-domains are homologous to the Condensation (C) domains. NRPSs catalyze peptide bond formation within (usually) large multi-modular enzymatic complexes. Specialized tailoring NRPS domains such as E-domains greatly increase the range of possible peptide products created by the NRPS machinery. NRPS can use a large variety of acyl monomers (approximately 500 different possible monomer substrates as opposed to the 20 standard amino acids in ribosomal protein synthesis) to construct bioactive secondary metabolites of 2 to 18 units long (with various activities such as antibiotic, antifungal, antitumor and immunosuppression). There are various subtypes of C-domains such as the LCL-type which catalyzes peptide bond formation between two L-amino acids, the DCL-type which links an L-amino acid to the D-amino acid at the end of a growing peptide, starter C-domains which acylate the first amino acid with a beta-hydroxy carboxylic acid, and heterocyclization (Cyc) domains which catalyze both peptide bond formation and cyclization of Cys, Ser, or Thr residues. Typically, an NRPS module consists of an adenylation domain, a peptidyl carrier protein (PCP) domain (also known as thiolation (T) domain) and a C-domain. NRPS modules may also include specialized domains such as the terminal-module thioesterase (Te) domain that releases the product via hydrolysis or macrocyclization and any of various C-domain family members such as the E-domain, the ester-bond forming C-domain, dual E/C (epimerization and condensation) domains, and the X-domain. C-domains typically have a conserved HHxxxD motif at the active site; mutations in this motif can abolish or diminish condensation activity.	0.00152615
NC_013093.1\|WP_015803993.1\|6286241_6287723_+\|hypothetical-protein	gnl\|CDD\|237408	PRK13517, PRK13517, glutamate--cysteine ligase.	4.13285e-08
NC_013093.1\|WP_015804011.1\|6307214_6307934_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	8.61325e-05
NC_013093.1\|WP_015804012.1\|6308100_6309090_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176196	cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.	6.71481e-177
NC_013093.1\|WP_015804007.1\|6299538_6300297_-\|hypothetical-protein	gnl\|CDD\|375611	pfam18181, SLATT_1, SMODS and SLOG-associating 2TM effector domain 1. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is often C-terminally fused to the SLATT_3 family, and is typically operonically linked to either inactive TIR domains or SLOG domains which could act as regulators of the SLATT channels. In relatively rare instances, it is genomically linked as a standalone domain to the RelA/SpoT nucleotide synthetase and the predicted NA37/YejK sensor domain.	0.00644876
NC_013093.1\|WP_015804000.1\|6293170_6293743_-\|isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235156	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase.	1.73046e-95
NC_013093.1\|WP_015803994.1\|6287964_6289797_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	3.76618e-11
NC_013093.1\|WP_015804002.1\|6294443_6295292_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.16683e-15
NC_013093.1\|WP_015804010.1\|6303142_6306604_+\|TM0106-family-RecB-like-putative-nuclease	gnl\|CDD\|274603	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.	1.77955e-62
NC_013093.1\|WP_143760897.1\|6292426_6293110_-\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	1.17617e-06
NC_013093.1\|WP_041837036.1\|6299043_6299460_+\|hypothetical-protein	gnl\|CDD\|373064	pfam14430, Imm1, Immunity protein Imm1. A predicted immunity protein, with an alpha+beta fold and a conserved C-terminal tryptophan residue. The protein is present in a wide range of bacteria in polymorphic toxin systems as an immediate gene neighbor of the toxin gene.	1.69942e-24
NC_013093.1\|WP_015804005.1\|6298309_6299056_+\|hypothetical-protein	gnl\|CDD\|373062	pfam14428, SCP1201-deam, SCP1.201-like deaminase. A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Streptomyces SCP1.201. Members of this family are predicted to function as toxins in bacterial polymorphic toxin systems.	9.27858e-45
NC_013093.1\|WP_187313446.1\|6296165_6297053_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176237	cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.84911e-117

>NC_013093.1|WP_015804002.1|6294443_6295292_+|class-I-SAM-dependent-methyltransferase
MPIHESPHDAREIAESFGTDADRYDRTRPSYPSGVVEAVLAALSGGVGVGGGAGVGDAPGVLDVLDVLDVGCGTGIVARQFRDAGCRVLGVEPDARMAEFTRRGGIPVEVARFEEWETAGRRFDAAVCGQAWHWIAPDAGAARAADVLRPGGVLAIFWNAARVAGEVGERFDEVCRGLLPGDLGKGAGAFGGDYSPLGDRAVVGIKTTNAFEEPIRLRFPWERVYQRDEWLDLLPTTGLFTRMPRELLTRVLDEVGATIDSVGGELTVTYTCETVIARRSAE
>NC_013093.1|WP_015804001.1|6293797_6294367_-|TetR/AcrR-family-transcriptional-regulator
MPTGVAIQDARNQLFDAAERVLLRDGPSGLTSRAVTTEASFAKGVLHRHFADFDAFLAEFVLDRAARPTPEVESLPDQVGRAEVVDNLTSALTALYASAAVAVVPLLTFRTALRDRLRDAWPAGVPVLTDAAVRITAYLDAERAAGRLPDTLPADALGPALVGSTHLLHTGPGATEDAVRRVVATVLRV
>NC_013093.1|WP_015804000.1|6293170_6293743_-|isopentenyl-diphosphate-Delta-isomerase
MERVVLLDETGAAVGEADKATVHHEETPLHLAFSSYLFDRGGRLLLSRRALHKKTWPGVWTNSCCGHPAPGEDLEAGVRRRLAEELGLPDVGLDLVLPGFRYRAVMDNGVVENEMCPVYRGVIDTEPAPNPDEVDDVEWVPWADFAPAVLSGARPISPWCLLQVEALAELGDDPLKWPVGSPADLPLAVR
>NC_013093.1|WP_143760897.1|6292426_6293110_-|DUF998-domain-containing-protein
MPVVLNAEIAAPSRFVGPGGALAVVLTVALIGGLDLHRAVTNPYSLRRTISEYALGPQKWVFDVGVLLLAAGSVAILVALVRAGVARWWSPGAVAMALWSAGLTLVVLFPKHNWAMGGPSASGTVHRVASVLAFLSLPVAALLLSRPWLRSAAWGAHARRVFALGWLSVLALSPLVYALLVDASGGTAWWRVFPLGYVERVLVLVEVVAVLAAGSWAIAVGKRPRVA
>NC_013093.1|WP_015803998.1|6292019_6292427_-|hypothetical-protein
MATWGDLAAYVRDQYDVIAQEDDEIRILFTFDHLDEEDERTQVIILVREVLDRKHEWVQIATPMGLASAVDLKALLEEIGHSSIACGAAIMGEHVVLRHSLPLQTLDIHEFTDPLALVAGTADTLEEQFFGGDNY
>NC_013093.1|WP_015803997.1|6291486_6291816_-|hypothetical-protein
MSTTPVVPAASYESMTVRVRAGLGEDRLAAAVEALTARHSELSDGGTSSRRVVVGGDPARARGGEALSVVWVDAGAEPGRLVLSVRQDVLAALPWRVLLPELASEWKTH
>NC_013093.1|WP_118948481.1|6291205_6291490_+|helix-turn-helix-transcriptional-regulator
MMALAVLEDEPRRFNDIKRRLEGVTQRVLTHTLRRLERNGMVERRVLPTSPVGVEYALTPLGRSLREPFWQLLEWTLEHSGEVERARRAYDGER
>NC_013093.1|WP_015803995.1|6290126_6290963_-|enoyl-CoA-hydratase/isomerase-family-protein
MTHAPLRVRAENGVVRVTVDNPPVNVLDARLITELKRLLVALRSDESARVIVFDSADPEFFLAHVDMTTTPEQVVELSADLPEGVNAFQALGELLRGQPQVSIVKLAGKARGGGAEFVAAADLVFAAIGRAGLGQVEAPGGIVPGGGGTQYVTARTGRNRALEIVLGADLFDAETAERYGWVNRALPADELDAFVDRLAANIAALPEGVIAATKRAIPAEDLSAGLVREHEEWAGLFARPAAGELLAGMMAAGAQTREGERDLEGLARGVGARVAAKG
>NC_013093.1|WP_015803994.1|6287964_6289797_+|AAA-family-ATPase
MHLANFSIRGFRSLAEVEDIPIGSPTILAGPNDGGKSSALDAVKFLLGRYSPIEDDRTYLEGESDGGRADIDVSGRFLLDEWEQEKFSLPAVIKLRRIMEYDQDARYEVWGPIPDDEDLRDLSRSKVSDLRELVQKYGLRPQSPGNKPELLAAVQEYARGHSSGEGWTGAPPNLTNRLPHVVTFTGKTLDPEAAVAEILGQQLKGYLQEESTRKQIEVLEGDAQDWLVAQAQPLVDHITRRCKDITEVAVKPDISMSPRLRSASLRLRRSTGEQVRLDRSGQGSARRISLAVWEASTDILVEEQQDEEMLAENGPPVPTIVVYDEPDTHLDYHYQREVMELIREQCRVPNTSVVVATHSMNLIDGVDLQDVVRLELDGTRRTRVERLGAATGHDGFDLHLQSIATAVGLRNSVLLHERCFLAVEGETEQKAIPVLFKLSEGLQLQSAGIALWACDGNSGALDLASYLHEHGRTVVLLIDADCEVKDRMFREAALQRVFGREGYHKVVKFLGKRQGVMELEELFDDATWAETANAQWPRVDGAPWSPDDFAAHRTGRKFSEGVVTMLKEEGETSPSGKPALVMAVVNRLKSPEQVPEGLRDAFADLKELAN
>NC_013093.1|WP_015803993.1|6286241_6287723_+|hypothetical-protein
MGDDVERHEFSREDRTRYRTKVRRCLDVFTRMLEEERFEVDRPMTGLEIELNLVDEAGDPAMRNAEALEAIADPDFVTELGQWNVEINVPPRELAGGGFAELEATVRTSLNQAEKRAREVDAHMVMVGTLPTLQARHMAVDALSGNPRYALLNEQVLAARGEDLEINVDGAERLQMTADSIVPEAACTSTQFHLQVSPERFPAYWNAAQAIAGVQVAVGANSPFLLGKELWPETRIALFQQATDTRSDELKEQGVRPRVWFGERWITSIFDLFEENVRYFPALLPICAEEDPERVLADGGVPSLAELRLHNGTIYRWNRPVYDVVDDRPHLRVENRVMPAGPTVVDTMANAAFYYGLAHALAQDERPVWSQMSFSAAEENFLAGARRGIDAQVYWPGLGTVPVVELVLRRLLPLAHEGLVGLGVDERERDRLLGIVEQRCLRGVNGATWQTRAFHRAYDGTSLERPEALRRVLRGYRDLMHTNEPVHSWPVAG
>NC_013093.1|WP_187313446.1|6296165_6297053_-|NAD(P)-dependent-alcohol-dehydrogenase
MLVKVKAASLNHRDVLIRAGNYAAQPTPGVIPLSDGAGEVVALGDDVTRFAVGDRVVGAFLPGWTTQPVPTSGEQYSIDVDGWLAEHRVIPEEALAAIPTGVDDETAATLPCAATTAWVALHGVGEGDVVLTQGTGGVSLFVVQLAVARGARVVATTSTAPKADLLATLGAEVINRVTTPDWPSEVWTRFGGAHRVIEVGAGLTRSLSALRPFGEVALVAPSREEVRTSAIFRTRATLRSLAVGNRLELEAVAAEVARLNLRPVIDGVFDFEDAENAHARQTEDDRVGKIVIRVG
>NC_013093.1|WP_015804004.1|6297233_6298163_+|AraC-family-transcriptional-regulator
MDPVDDILTTMGLAHRSHHRVTASAPWGVAFSGAAPMRLVVVARGRCVLSEGGGVVELGAGDCLVVRGGAEFVLSDVAERVPAPAREVLTAREVAVGGGGAGCEVLVAAFSFDAVAAEPLLPRLPDVLRVSLRGGNLRRVLATVELMVLESGDGFGSELVLGKLGDVLLVQVMRAWCAGSGDDRPGWLAALHDPRLSLATRAMHGDLAHPWTVASLAGRAGMSRSAFAAAFRERTGESPLAHLTYWRMHRAKALLREGRTLQEIAVRVGYETDTALSRAFRRAEGVSPGRWRGLVARVGDSGGEACPVA
>NC_013093.1|WP_015804005.1|6298309_6299056_+|hypothetical-protein
MGSIGDVAERVAVVVGEVERCAAELVRARELAEEAFSLLAIALEGAVGLEWESALALSAIADVVDGIADELLPALAGVVARLEAVRARLIGEGGGPGAVPEGGDGPPAVPAEEVERLRGELPPPVVPGTGQKTHGRWIGPDGRVRAIVSGRDEDAALVHAQLAAKGIPDEPTRNSDVEQKLAAHMVANGIRHVTLVINHRPCRGFDDSCDTLVPIILPEGCTLTVHGQTDKGMRVRVRYTGGARPWWS
>NC_013093.1|WP_041837036.1|6299043_6299460_+|hypothetical-protein
MVELEAWYGDDQDDAVPVRTAAELDAVLDEVAAMRGRVIVHLKVARPPSLDVRRMILNVGLNGDAGLGSLFYRSPSGAWYSQGAAADPSVSELLYYYMNSDTEYPLDCEIPIDAVRRAAHEYRSAVDTRPSAPGWQPA
>NC_013093.1|WP_015804007.1|6299538_6300297_-|hypothetical-protein
MSGDGITDRLGGGDQARKKGRPLRGAPTGRLRDEDVPDPTARVALEPQGEPDDATRAVPVDGVRGRHAARAATPGAPDPDEKPARAPRKPAKPRVAKQPNPALLTPPPRRTPLVTGPVSAADHREQFLRAYLRHRVGERLARLEAAKAAYTRARRWTTTASVLLFTGAAALGALAVATPDHRSPLAFLATVAAALATSVTVYESAFGFRAKARRSASGAALLHLLQAHGAPTGDHGVAAFRAEVESVLRHAD
>NC_013093.1|WP_041837037.1|6300293_6301517_-|hypothetical-protein
MSPAAGGPRVRRLAHPDADIRARALGLPRGRPVVALLGSPEPLDPELSATVLPVLRTVLSEARRAGAVVLTTGADLGVAHLTGLASEALDGAGPRLVGIAPGRLVAADDAEPRPGELPLNQRHDTAVLVPGSRWGDEVPALLRVVDAVARKRPALVVLLGGDEGARAALVEHLGHDRPLLLLAGTGGLADELVSGALADEDIGVLARAGQVAVVHVDEGPERVLAVLRGVLGSKAGTPLRADVPTLALWPRLRFRAPDARPVVDPGFVLDYPLLADAIHEANEVIAPALHECEVESLRARERGRLLASAAILAGFATTSFAALQVWLRDVPWPGVLVAVAGAAAAVLAVVSRGADDVEFRSRAELLRALYFDHLSTPPPKNEAEREERVRALVTAVARHRHEPVGAA
>NC_013093.1|WP_084799024.1|6301594_6303055_+|SDR-family-oxidoreductase
MSTSEQAQAGDSPAEVPPVEPAAVPGIDPAEMEIALRVLAQVDDLPPEHPDTIALRRATSRIYKQVRKNRKTARRQEVLDADNSVIAATATGSPTRIDDETAGILLREPDPGESAGTFRKARPCYICKQRYTRVDAFYHQLCPKCAALNRAKRDARTDLTGRRALLTGGRAKIGMYIALRLLRDGAHTTITTRFPHDAVRRFASMPDSGDWLHRLRVVGIDLRDPAQVVALADSVAAAGPLDILINNAAQTVRRSPGAYAPLVAAESDPLPSGPLPELVSFGHSSAAHPPALTGGLPGGAGVDVTALALVAGSSLIDAGGLVPDVAESNSWVQTVGEVDPVELLEVQLCNSTAPFILVSRLRPAMAASQARRKYVVNVSAMEGVFGRGYKGAGHPHTNMAKAALNMLTRTSAADVFEDGILMTSVDTGWITDERPHFTKLRMAEEGFHAPLDLVDGAARVYDPVVRGEAGEDLYGCFLKDYGPYSW
>NC_013093.1|WP_015804010.1|6303142_6306604_+|TM0106-family-RecB-like-putative-nuclease
MFSANGRYVHSPGDLVDLLECEHRSRLTTALTKGVPDAPQPAPPQDLLAARHGLAHEKAVLERFLAAGEVFEVPQPAPVHEALVEAAALTWDAIARRVPVIYQGVFYDGDFHGRADFLVLTEDGYEPHDAKLARHPTPAAVVQLTAYSAALGDQAGPKAHLLLGDNTTRTFRVSDFLPIVADLRARLRATVAAPPALPARLWDDERPACATCRFSAHCADGRERSRDLSLVAGIRTDQRRKLASAGLDTIDALANATNTERPTTMSQGTFAGLRAQAALQVIQDTSRTRDNPVGKVAYEVVVPDALASLPQPSPGDLFFDMEGDPYALAGEGLEYLFGMVTHEEVFTPFWAHTRPQEKAAFERLVDLATSRLAEHPDAHVYHYAPYEVSALKRLAALHGTREEEVDHLLRSNALVDLYAVVRKALRVSQRSYSIKYLEPLYMPEARSGDVKNAVSSIEAYEEYLVLTSMGDTGRAEEVLDGIAEYNTYDCVSTLRLYRFLLQVREEAGIEPRTAEQSLYEEIEDEIAQQRRAERAERIAAVVDPLIEGLPDNPADFTDDERARALLAAAVGYHRRETNPAWWDFFRQLAAPLSELESDSSCAVAVSVRADDWVQPAGRVKKAKREVRVRCDPDRPHPFSKGEKVRLLYPGTPDSETRDAEVLFESADEVVLLESASPDEAGGGNPVAVLPGSPVRPAPKDEAVYELARLVVEHLPELPAHPGVDLARRLAPRLRAGSLPRSGDVIADVIGAVDALAGSVLAVQGPPGAGKTYLAGRLIAHLIAGGRSVGVTSNSHKAVENVLTAAIKAGRELGVPIPAAKNPKGQPVKDCLWEQTKNNPALLRWREDQGGGHLVGGTAWTFSNAAMREQPFDVLIVDEAGQFALADALAVSTAARNLVLLGDPQQLPQVVQGTHPAGADASALGHVIGDADVMPPELGYFLAQTRRMHPSVCLPVSNLSYAGLLHAHESAGGRRVVGIAPGLYVREVDHRHNTTKSDEEAAAVGELVAAIVGREWVDGDDRRPLECSDVLVVAPYNLQVRLVKRELERRGFGEVRVGTVDRFQGQEAPVVISTMTSSSAVDLPRGLDFLLSRNRVNVALSRAQALAVVVCSPRLVEADIRGVEQLRLVSGMIGLLGEARNWNNSPVAGGAAAG
>NC_013093.1|WP_015804011.1|6307214_6307934_+|LPXTG-cell-wall-anchor-domain-containing-protein
MQFARTAGKSIGVAATVVAAGLLMALPASAHNRSLDVKCAPTGEAVFTLKLTQYSTRYDNTLKVTEGSTVLEDTTFKGNFVKEYKVPGDVARTFKVELVAGDDNSKSTYSFKAEKSLKELCKQPEKPSTTPETPKSEVPPTEDSVPPSPTSSSSPAPSVTESAPVPSSQEVPFPSVTESTSPAPTTTTSAEVVPVTEDTEGLANTGASVAVPLGIGAALLAAGGGVLFFMRKRGAANNG
>NC_013093.1|WP_015804012.1|6308100_6309090_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAAVITGVGSVEVTEVPDPTPGPREVVVDVAACGLCGTDLHILQGEFAPTLPVVPGHEFSGVIAEVGSDVTELKVGDRVAVDPSLYCFECRMCRLGKNNLCERWNAIGVTRSGGAAEFAVAPVSNCVKLPDSVRTEDAALIEPLSCAVRGYDVLRSQMASRVLIYGSGTMGLMMLQLGKLTGASSIEVVDLNPERLATAHKLGVTATAASADELDRPQGWDVVIDATGNAKAIQDGLGRVAKGGTFLQFGVSDYATRVTIDPYRIYNQEITITGSMAVLHSFERAADLFATGVLDPEVFISHREPLSSYASALEMFKNGQGRKIQVLP

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Crispr_ID: NC_013093_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_8

6440070-6440219

Orphan

Consensus_repeat	Method
TCCCGTTGCCGCGCAGCACCCTCG	CRISPRCasFinder

3 spacers

csa3

The CRISPR arrays of NC_013093_8

>merge|NC_013093|8|6440070-6440219|CRISPRCasFinder
TCCCGTTGCCGCGCAGCACCCTCGGCCGTCCACGCACCCGGTTCCCCTTGCCGCACCGCACTCTTGATCGCCCACGCGCCCCGATCCCCTTGCCGCGCAGCACCCTCGATCACCCACCAATGCGATTCCCGTTGCCGCGCAGCACCCTTG

>NC_013093|8|7|6440070-6440219|CRISPRCasFinder
TCCCGTTGCCGCGCAGCACCCTCG	GCCGTCCACGCACCCGGT
TCCCCTTGCCGCACCGCACTCTTG	ATCGCCCACGCGCCCCGA
TCCCCTTGCCGCGCAGCACCCTCG	ATCACCCACCAATGCGAT
TCCCGTTGCCGCGCAGCACCCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_084799027.1\|6447934_6448942_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NC_013093.1\|WP_015804123.1\|6437118_6438156_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270370
NC_013093.1\|WP_015804124.1\|6438346_6439549_+\|4-hydroxybenzoate-3-monooxygenase	unknown	unknown	gnl\|CDD\|236198
NC_013093.1\|WP_015804119.1\|6430566_6432522_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|225109
NC_013093.1\|WP_041838389.1\|6447437_6447788_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NC_013093.1\|WP_049797191.1\|6444878_6445703_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|280735
NC_013093.1\|WP_015804122.1\|6433672_6436855_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|377989
NC_013093.1\|WP_143760910.1\|6424891_6427522_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_013093.1\|WP_015804121.1\|6433253_6433676_-\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|224929
NC_013093.1\|WP_118948490.1\|6442049_6442817_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_013093.1\|WP_015804125.1\|6440357_6441242_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213260
NC_013093.1\|WP_084799026.1\|6444300_6444948_-\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NC_013093.1\|WP_015804126.1\|6441243_6442053_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NC_013093.1\|WP_118947610.1\|6429601_6430048_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015804133.1\|6446376_6447345_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NC_013093.1\|WP_015804128.1\|6442997_6443234_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015804117.1\|6428967_6429627_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_013093.1\|WP_015804116.1\|6427590_6428805_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173810
NC_013093.1\|WP_049796979.1\|6443567_6444320_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_013093.1\|WP_015804120.1\|6432627_6433215_-\|ATP/GTP-binding-protein	unknown	unknown	gnl\|CDD\|225138

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015804123.1\|6437118_6438156_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270370	cd13652, PBP2_ThiY_THI5_like_1, Putative substrate binding domain of an ABC-type transporter similar to ThiY/THI5; the type 2 periplasmic binding protein fold. This subfamily is phylogenetically similar to ThiY, which is the periplasmic N-formyl-4-amino-5-(aminomethyl)-2-methylpyrimidine (FAMP) binding component of the ABC transport system (ThiXYZ). FAMP is imported into cell by the transporter, where it is then incorporated into the thiamin biosynthetic pathway. The closest structural homologs of ThiY are THI5, which is responsible for the synthesis of 4-amino-5-(hydroxymethyl)-2-methylpyrimidine phosphate (HMP-P) in the thiamin biosynthetic pathway of eukaryotes, and periplasmic binding proteins involved in alkanesulfonate/nitrate and bicarbonate transport. After binding the ligand, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ThiY/THI5 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.24218e-49
NC_013093.1\|WP_015804124.1\|6438346_6439549_+\|4-hydroxybenzoate-3-monooxygenase	gnl\|CDD\|236198	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.	0
NC_013093.1\|WP_015804119.1\|6430566_6432522_+\|diguanylate-cyclase	gnl\|CDD\|225109	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms].	3.26554e-30
NC_013093.1\|WP_049797191.1\|6444878_6445703_-\|segregation/condensation-protein-A	gnl\|CDD\|280735	pfam02616, SMC_ScpA, Segregation and condensation protein ScpA. This is a family of proteins that from part of the condensin complex that regulates chromosome segregation. This is the A subunit, which binds to the ScpB subunit, pfam04079, and SMC, pfam02463, to participate in chromosomal partition during cell division. The condensin complex pulls DNA away from the mid-cell into both cell halves. These proteins are part of the Kleisin superfamily.	5.05944e-60
NC_013093.1\|WP_015804133.1\|6446376_6447345_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	6.47191e-88
NC_013093.1\|WP_143760910.1\|6424891_6427522_-\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	7.86841e-33
NC_013093.1\|WP_015804121.1\|6433253_6433676_-\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|224929	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only].	4.5386e-22
NC_013093.1\|WP_118948490.1\|6442049_6442817_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.50296e-49
NC_013093.1\|WP_015804125.1\|6440357_6441242_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.02198e-108
NC_013093.1\|WP_084799026.1\|6444300_6444948_-\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	5.76958e-58
NC_013093.1\|WP_015804126.1\|6441243_6442053_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	3.83873e-53
NC_013093.1\|WP_015804122.1\|6433672_6436855_-\|sensor-histidine-kinase	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	1.86556e-24
NC_013093.1\|WP_041838389.1\|6447437_6447788_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	1.04351e-09
NC_013093.1\|WP_084799027.1\|6447934_6448942_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	4.21125e-147
NC_013093.1\|WP_015804117.1\|6428967_6429627_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.42451e-27
NC_013093.1\|WP_015804116.1\|6427590_6428805_+\|S8-family-serine-peptidase	gnl\|CDD\|173810	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	2.00788e-30
NC_013093.1\|WP_049796979.1\|6443567_6444320_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	5.77826e-90
NC_013093.1\|WP_015804120.1\|6432627_6433215_-\|ATP/GTP-binding-protein	gnl\|CDD\|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	8.9875e-46

>NC_013093.1|WP_015804124.1|6438346_6439549_+|4-hydroxybenzoate-3-monooxygenase
MSNQHSEWAVQSNEAVVGIVGAGPAGLTLANLLHEAGIACTVLERGTREYIETRPRAGVLEHRAVQMLTEHGLAGRLLEEADRHGACEFRVNGEAFEVDYSALYGGQTHYVYPQQDVVRDLLGNYLARGGDIRFSVSDVELSGIDSASPVLTWLSATGERERLECAFVGGADGFHGVTRKSIPQGAVQEFTHQHGIEWLSVLAEAPPSTHKVIYALHPDGFAGHMLRNSTVSRYYLQVPIGDSPDNWPDERVWAELHKRLALRDSDWRLTEGRIIEKRVLDMRSHVVEPMRFGRLYLLGDAAHIITPVGAKGMNLALHDAEVLASALIGYLRTGDDSGLEGYSEKCLRRVWRAQEFSQWMVFMLHRSPEPFLSRLGQARLEHLIDSKSSVGYFAQNYVGP
>NC_013093.1|WP_015804123.1|6437118_6438156_-|ABC-transporter-substrate-binding-protein
MTLRVGRSARRIIGGLSALAMLAAVSGCGLLGGSSEDGSASDGGTSTAPGQVEKSKIKLGLLNILDVASVHIAIKKGYFKEEGLEIEPVIIQGGAAAIPGLISGSIDITFGNWVSYFAAESQGAAKDKGGLKLISDGYQAKSDMFVIVAAPDSGIKSPKDLDGKTIAINTYKNIAELTAKATLEANDVDPSKVKFKELGFPDMEAAVKNKSVDAAFMVEPFIARSHRGSGFTTVLDAASGPTNDIPIGGYATTGDFASKNPNSVAAFQRAMAKGQKEAQDRSVVEPVLQDYAKIDKDTATLVHFGEYPTSLEASRLQRVADLMLTYQLLKEKFDVTPMIVSGSAG
>NC_013093.1|WP_015804122.1|6433672_6436855_-|sensor-histidine-kinase
MRGHDDHASGEGRPERTQLDAGAQGKAPDPGPGTTTTPTAGRGISRWRLRNWKLRSKLVVVLLVPAMSTLALAGLRLTTQLDDVELYGKVQRELQLSAQAAAVGDALQLERDAAVGYVAAGRKTNPDATARVGELNTRSGKVDAEVMRLRDVGAATGDIDDTVRTAYEKSLQSLDGLNSLRNTVLESQYPDASVASAYGQLLGTLLQVHRATSSSLSNEHLTPLVGANLALYAAKEQLAQQNSILISAANRSEFGPNQANALRGAQSKLDSAITDFTNVASQDNRQNYQDTVSGTAVDARNRLVTLALVQNDNGKAISFNENDALRVGEDTAALLRQVSLDIEDQAQREAVRLTDEANALAWRDGALVAAALIIAFALMAVVATSMLTPLRVLRRTALDVARNRLPDAIKRIRTHRDPERAAEESLVPVPIHTTEEVGQVARAFDAVQREAIRLAVEQVALRANVNDMFINLSRRSQALVERQITVIDRLEQDEQDPDQLASLFELDHLATQMRRNSENLLVLSGTTVTRRVTRPVPITEVLGAAVSEVEKYARVHIAPAPDLRVQGRVVNDLAHLIAELLDNATAFSKPSTKVTVRAIETRRGEVSIRIHDRGVGMQEQDVVEANLKLSEPPEVDVSVAREMGLYVVGQLAKRHEIHVSLRNNDDIEGGVTAQVLLPAGLLHRGPDPQGGGGRQSLPLGRPGVLALADPPEVEETGAVALSGLPKWSPDQMPSAFGEAAPEHAFRGRPGQNGVTPQETTFSGSSFSGTSFDSFEDTGAHRPVEHNSSADGLFTATVTETAPPRAGDDIDYSYPPAQQGQQQRAVPAPAPAVVEDDASTQRLPIYEDVLSRWFQGGDEDSGEARVRGEGRTRGEHALPDEPEPQDHDVVLDGGSDAERTVFAEPVGDAQPDQALASAPASASGLGGLPKREPAPSKVSAAAANWGSSDDNWSTASKVLKSAVDESTTAGLPKRVPKARLMPGSLSTGSSTTATQATVRAEGRTGPSGGVATAQGPRSADRLRQRFATYQRGLQMGRDNNQDDDSLPWEGLSFGNSDKEQK
>NC_013093.1|WP_015804121.1|6433253_6433676_-|roadblock/LC7-domain-containing-protein
MTSAADELENFSWLVDDFVNRVAGVAHAIVVSADGLLLAASERLPVDRAEQLAAVSSGLVSLNLGAARCFEAGNVKQTVVEMERGYLFLMSISDGSCLAVLAAPNCDIGLIGYAMTRLVDRVGVQLTPEIRSQLHVAMRN
>NC_013093.1|WP_015804120.1|6432627_6433215_-|ATP/GTP-binding-protein
MSGGAPAGRTAPTTTSTKIVVAGGFGVGKTTFVGSVSEIVPLTTEAVMTEASVGVDDLSSTPNKVTTTVAMDFGRVSLDSDLILYLFGTPGQHRFWFMWDDLVKGAIGAVVLVDTRRLSDAFASIDFFEDRDLPYVVGVNCFDGLLHHRVEDVREALTVDASVPIIPCDARNRQSTKQTLITLVEHALRRQPLFA
>NC_013093.1|WP_015804119.1|6430566_6432522_+|diguanylate-cyclase
MTQPSRPVPLTGSAPPAGAPSVGEVAERWTGELVRTAYSPIARAKVRRKLVQHVGLLDELLASPDLPADEAVAVGEWLVTARFTGDTSLGSSLEVLGRALAARAPDSPERVAELLGAVAGGYAARLRLQVFGEHEEVRASLLAALERTRVELHDSEARFRQVFAHSAAGIAVFDADGELLESNAALTGMLGPDFGGQDLSGLRGEWAAMAVRGEDVSHVEQMFLDPSGDPLWTNVALSVVAGEDGGPRYHLAVVEDVTEQRMLREYLRHQALHDVLTGLPNRQSFLPKLEEVLGRPGSITLCYLDVDSVAIVNDGLGYEYGDELLKVVAGRLTSVAEGLTATVARIGGDEFVVLVEDGPGTPSISELAAMIDGALAEPVRLAGHAVGVSAGMGFVRTAARGLDAMALLRQAHSTLRRAETGGKGQWGIYDAGHDEKERSRLSLIAAMPGALETGEIAIDYRDVRDRSGERVALAARLRWEHDGTTVGHDDCLRYADELGLAGALAEWLLDEACSFASLEALPVLVRLSADQSRDPDLSGLVGGAVRGWALAEGQLWLSLDSAAAGLGEEVEENLSVLADMGVRRLLHGCALGQGELALLERQRPHGVEPAGAPDGSELARRAREALLPMVRGAGALVLSERADDDADLVVG
>NC_013093.1|WP_118947610.1|6429601_6430048_+|hypothetical-protein
MRSVWVSDERLLADLGRALAEAPAVPEEYLVAGRAAFDWRDVDAELLLVTGYDSLLDGELAGRARGGLATRQLVFDADGLSVQVEVDPAGVTGQVAPPAPGRVELETAGGVVEAVELDELGYFLLGPLPRGAARLRVAGVAVTEWFLG
>NC_013093.1|WP_015804117.1|6428967_6429627_+|sigma-70-family-RNA-polymerase-sigma-factor
MTPARPVAALVGAAAEGDRGAWDQIVERYTPLVFSVVSRHRLRPADGADVNQVVWLRLVEQIGRLRDPAALPGWIVTTARNECLRVLRAQQRLLPFDPADEESAVADGEDLDARLVDAERLQALRDGFGALPEQCRRLLARLLADPPPSYAALGAELGVPVGSVGPTRLRCLEKLRRTEAVSRLLSGGSSGGSSGGSSGGSSGGSVEDPVGGALGVGER
>NC_013093.1|WP_015804116.1|6427590_6428805_+|S8-family-serine-peptidase
MSAKTFAAPDRSALYTAAFDEAIRSGKDVALHPEKGREFLYRPGQLLTIPEDAARVIEKLRRSGFAVERGREFAGMVRLLLENNSRDIPAIVRLLRDPATWPGERTPFTQPHHVSVGHGGNMHGHPGGPPRVATALPDPDPGDGRGRGVVVAVLDTGMSATAGADHPAWLGGSFTPRADEVDAAYAHDDVFALEGGHGTFAAGVVRQAAPSVRVDPERALLPSGLGDEEMFAAALASFDERPVHVVNASLGCSTQDDVASEPMRRALAALQKDVVVVASAGNQGTTRPSWPAALPGVVGVAAIAEERDGTRSPACYSNHGHWVDACAVGNRTSTYLKGKWVLPGDPAVDVFDRWAYWLGTSFAAPHVSGRIAATMTQLGLTALQARDHLLAGAEFFPGYGVAVG
>NC_013093.1|WP_143760910.1|6424891_6427522_-|CHAT-domain-containing-protein
MGRVSVVSASAALEARQRDPRAAIGLGRAALAAARASGDLAEASAAERAIGLSLRELHDFPGALRHLRRSVRLARGAGSDRLTALARLSLAFALSSTGRHAQALRAVEQALPRLRGGDADIAVMQRGTVLHFLCRYDEALRDYDAAIDAARRTGDHLGEARARNNRGLLRAYTGGLRAADEDFDRAAALYRELGLELAVADVRWNAGISAQRAGDVPGALTAFADAEQEYRRLAVPRPMLLVNRLELLVSVPLLEEARAEADRAVADLADHPDFALGRAEAEFYRARVALLEGDADTAAEVADRARRAFHRQGRDVWAASARHVGLRAAYLGGRRDRALLTAMARIADRLDALGWRVAGLEARVDAALIARDLGDTRRAAAELALAAPARRSGPAQARARGWYAEALRRELAADRRGAAVALRRGLALLDEHRLSLGAGELRALSGAHGQDLARAGLRLALTGGAGARQVLAWAESWRAGALRMTPARPPEDTGLADALTELRAVTADLERALLEGRPAGALRQRQTRGEQRVRELTRRGGGGGRLLRPPTVPELADALGDAALVEYIGSEGDLLAVVVAGGRASLHRLGALDDAAREVRLLRFGLHRLVTLPARVDRSGGRAGVDHAAGRLRKRLLDPLERRVDGRDLVLAPTGALGGLPWAALPGLLGRPTVVTPSAAVWLRAATSGAPAPGRAVLAAGPRLPAARGEVDAVAALTGDALVLVGEGATVDAVAAAIDGAPLAHVAAHGTFRADNPLFSALELADGPLTGYDLQRLAAPPARVVLSACDSGLSAVRPGDELLGFTAALLGAGTGALVAPVVPVPAEETAPLVVELHRGLRDGLPPATALARAQAAHAGLGDLEFAAGAGFLCFGA
>NC_013093.1|WP_015804125.1|6440357_6441242_-|ABC-transporter-ATP-binding-protein
MTAMLEVAALGHTYQGKDGAHTAIDDLSFTVGAGELVCVVGPSGCGKSTLLRTISGLVRPSRGAVSLHGNAVKGVPDDLAVVFQDYSRSLFPWLSVQKNVEFPLRSSVGRAKRRARAAEALEWVGLAAAGRKYPWQLSGGMQQRVAIARALAYRPALLLMDEPFASVDAQTRFELEDLLLKIRTEHDTTVLVVTHDIDESVYLGDRVLVLSTSPASVVADLRVDLPAPRDQITTRESDVFVGLRAEVARLLNVGKPSPARRPAPGRRAADGQAARWAAEERAEVERGAAQRLAR
>NC_013093.1|WP_015804126.1|6441243_6442053_-|ABC-transporter-permease
MRALSGFLQRWVVFGCLVLVWEVAAFLADDPFFPRPTVIAEAAAELWLSGPAETLFLSDVVFEHLVPSLTRLLTGWGIAAVVGVALGLALGRSARAMEYAGPVLTFMRSIPPPALVPVFLLLFNIGTSMQLATIVFGVLWPILLNTVDGARSVDSTKTETSEVFRIPRAQWVLGVVLPSAAPKIFAGLRVSLSLSLVLMVVSELVGTDNGIGSQLLLAQRQFDFPGMWAGIVLLGVLGYTLNTVLLALENRALAWQPKREGRTPATVED
>NC_013093.1|WP_118948490.1|6442049_6442817_-|ABC-transporter-permease
MRALTRGLLGAAGFLVIWELFGRSGLVPQEYLPPPSVVAVELLALLGDETFLRDVVATVLALLISVLLSVGIAVPAGLVLGSVAPVRHATRAVVEFLRPIPSVALIPLAIVVLGLGPEMKIALAVYAAVWPILFNTIYALDELDPLLVDTARVFGASRLRVLLSVALPSALPFVFTGIRLSATTCLVVLVSVEMLAGGAAGIGEFVMDARSGAGRMDLVLAGTVVAGVLGYLVNEGLERAQRRWVGWGFVQGGRS
>NC_013093.1|WP_015804128.1|6442997_6443234_-|hypothetical-protein
MRVIRSGRAGRPVWTALWYRVRGFAEQFEEIVRPATGMDGCGALSEAFAGGRGKLIVNSSSVDEKRVFPAIRGIARMP
>NC_013093.1|WP_049796979.1|6443567_6444320_-|rRNA-pseudouridine-synthase
MRSTMSDPGSEGVRLQKVLAKAGIASRRVAEELIELGRVQVDGEVVREQGRRIDPDKAVVHVDGVRVVLQEDVVTLVLNKPRGMLSTMHDDAHRPCVGDLLVNRKERLFHVGRLDADTEGLLLVTNDGDLAHRLMHPSYEVPKTYLAEVPGPIPRDLGKRLRSGIELEDGPVKVDSFKLISSLPGRALVEVVLHEGRKHIVRRLLEAVGHPVQTLVRTAVGEVRLGNQRPGSLRVLNRQEVGSLYKAVGM
>NC_013093.1|WP_084799026.1|6444300_6444948_-|SMC-Scp-complex-subunit-ScpB
MGRRQRRGGPRGAGRRRGRGVRVSVTDDAEASAVDLSDDAEFESALESVLLVVDTPIDEQQLAGVFEQPARRVKATLRRMSERYTASGSGIDLRRIGDGWRFYTRDRHAPFVEKLLLDGQRAKLTRAALETLAVIAYRQPVTRARVAAVRGVNVDGVIRTLVARGLIAEAGNDNDTGGILYRTTELFLERLGLASLTDLPPIAPLLPEVDAIDDV
>NC_013093.1|WP_049797191.1|6444878_6445703_-|segregation/condensation-protein-A
MPDARPVADEVADGRFKVRLTNFEGPFDLLLQLISQHTLDVTEVALHRVTDDFIAHIRSLGDAWDLDETTEFLVIAATLLDLKAARLLPQGDVEDEEDLALLEARDLLFARLLQYRAYKQVAALFAELEQGAQRRYPRSVALERRFEGLLPEVMLGVDPRRFSEIAAVVFRPKPPPTVSTAHVHQHRISVREHAALLRERLAELGTATFTELVADCENTLEVVARFLGLLELYREKVLAFEQPEALGELSVTWVGGSVEEARAAPDDDEDEEYG
>NC_013093.1|WP_015804133.1|6446376_6447345_-|ParA-family-protein
MSSPEQVGEGKHPARPPGAGVRKASVDLSLAPHAAPVEEEVPDQAVGEIGPTGRPLRFVADPPEVVHHGPAKILAICNQKGGVGKTTSAINLGASLAEHGRRVLLVDFDPQGALSVGLGVHPHQLDQTIYNVIMERDVGVQDVIMGTPVENMHLLPSNIDLSAAEIQLVSEVGREHTLVRTLRPVLDLYDYVLVDCQPSLGLLTVNALAAADGVLIPLECEFFSLRGVALLIDTIEKVRERLNPKLEITGILATMYDPRTLHSREVMARVVEAFGDVVFDTVINRTVRFPETTVAGEPITRWAPRSAGARAYRALAREVIAR
>NC_013093.1|WP_041838389.1|6447437_6447788_-|helix-turn-helix-transcriptional-regulator
MGEGVVVVGLPEPERSDIELGSVLHALSDPTRLAVVRQIEAEGERLCGGLSVEVAKSTLSQHLRVLREAGLTRTRACGNQRWVSLRRDDLDRLFPGLLDVVLAAASRGRDREPVAG
>NC_013093.1|WP_084799027.1|6447934_6448942_-|site-specific-tyrosine-recombinase-XerD
MRRRWGSDTPQRYPSGAPGRAVLCERADLRATCGGAVPGVTPADAVTAYLDHLAVERGAARNTLDSYARDLRRYLAHLESAGLGLDAVTEAVVGDFLAGLRESGLAASSAARTLVAVRGLHRFAHREGLTAADPAKDVQPPAAPRRLPKALPVADVLRLLDTAGDTPAALRDRALLELLYSTGARISEVVGLDVDDVDAAERTALLDGKGGKQRVVPVGRPALAAVEAYLVRARPVLAKRGGPALFLNARGGRLSRQSAWQVLKTAAERAGVAAEVSPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHPRATG

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Crispr_ID: NC_013093_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_9

6561020-6561119

Orphan

Consensus_repeat	Method
GCTGCTGCACCACCGCGCTGGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_9

>merge|NC_013093|9|6561020-6561119|CRISPRCasFinder
GCTGCTGCACCACCGCGCTGGACCGCTGCGCCGGGCCGCCTTGCTGGACCATGCGCGAATCACCGCATTGGACCGCTGCGCTGCACCACCGCGCTGGACC

>NC_013093|9|8|6561020-6561119|CRISPRCasFinder
GCTGCTGCACCACCGCGCTGGACC	GCTGCGCCGGGCCGCCTTGCTGGACCATGCGCGAATCACCGCATTGGACCGC
TGCGCTGCACCACCGCGCTGGACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015804220.1\|6552767_6554081_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_013093.1\|WP_015804225.1\|6557512_6559000_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|236126
NC_013093.1\|WP_015804219.1\|6550511_6552683_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_013093.1\|WP_015804234.1\|6567753_6567945_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015804229.1\|6562340_6564236_+\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|274414
NC_013093.1\|WP_015804223.1\|6555371_6556556_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|179560
NC_013093.1\|WP_143761193.1\|6565584_6566187_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181235
NC_013093.1\|WP_015804228.1\|6561708_6562344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213192
NC_013093.1\|WP_015804224.1\|6556596_6557217_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015804226.1\|6559191_6560022_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_013093.1\|WP_143761194.1\|6572104_6572605_+\|DUF4352-domain-containing-protein	unknown	unknown	gnl\|CDD\|378684
NC_013093.1\|WP_118947649.1\|6564889_6565507_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236232
NC_013093.1\|WP_118947648.1\|6564196_6564844_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013093.1\|WP_015804233.1\|6566484_6567720_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_013093.1\|WP_015804222.1\|6554880_6555402_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225188
NC_013093.1\|WP_015804227.1\|6560032_6560959_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NC_013093.1\|WP_015804218.1\|6549462_6550446_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224196
NC_013093.1\|WP_041838406.1\|6554220_6554733_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
NC_013093.1\|WP_015804235.1\|6568950_6571617_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NC_013093.1\|WP_015804236.1\|6571671_6572082_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|161843

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015804220.1\|6552767_6554081_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.00474853
NC_013093.1\|WP_143761194.1\|6572104_6572605_+\|DUF4352-domain-containing-protein	gnl\|CDD\|378684	pfam11611, DUF4352, Domain of unknown function (DUF4352). Members of these family are putative lipoproteins that fall into the Antigen MPT63/MPB63 (immunoprotective extracellular protein) superfamily.	4.72673e-05
NC_013093.1\|WP_015804219.1\|6550511_6552683_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_013093.1\|WP_015804229.1\|6562340_6564236_+\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|274414	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.	2.93342e-76
NC_013093.1\|WP_015804223.1\|6555371_6556556_-\|dephospho-CoA-kinase	gnl\|CDD\|179560	PRK03333, coaE, dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional.	0
NC_013093.1\|WP_143761193.1\|6565584_6566187_-\|AAA-family-ATPase	gnl\|CDD\|181235	PRK08118, PRK08118, DNA topology modulation protein.	3.34065e-15
NC_013093.1\|WP_015804228.1\|6561708_6562344_+\|hypothetical-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.87253e-05
NC_013093.1\|WP_015804225.1\|6557512_6559000_-\|30S-ribosomal-protein-S1	gnl\|CDD\|236126	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed.	0
NC_013093.1\|WP_015804226.1\|6559191_6560022_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.12741e-22
NC_013093.1\|WP_118947649.1\|6564889_6565507_-\|hypothetical-protein	gnl\|CDD\|236232	PRK08309, PRK08309, short chain dehydrogenase; Provisional.	1.90601e-15
NC_013093.1\|WP_118947648.1\|6564196_6564844_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.7921e-17
NC_013093.1\|WP_015804233.1\|6566484_6567720_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.7753e-37
NC_013093.1\|WP_015804222.1\|6554880_6555402_+\|hypothetical-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	2.53107e-11
NC_013093.1\|WP_015804227.1\|6560032_6560959_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	3.46173e-06
NC_013093.1\|WP_015804218.1\|6549462_6550446_+\|ABC-transporter-permease	gnl\|CDD\|224196	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only].	3.32042e-08
NC_013093.1\|WP_041838406.1\|6554220_6554733_+\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	4.81521e-27
NC_013093.1\|WP_015804235.1\|6568950_6571617_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NC_013093.1\|WP_015804236.1\|6571671_6572082_+\|hotdog-fold-thioesterase	gnl\|CDD\|161843	TIGR00369, Putative_esterase, uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.	1.37411e-31

>NC_013093.1|WP_015804227.1|6560032_6560959_+|GNAT-family-N-acetyltransferase
MTVARGLADAQSARLVGIDPVLPPMIAPLDGDVVTAALPDGTRVAGVLQQQVHERNSPARLWSATEVWELTPLLGGAGPAGMDALMRAWRRRMELVGPAERDSACVLTWPSRDVESGSVLMDHGMVPLSVVAVRRGPAPAARSGSLVIRRAKPSDLEAVLELAMAELRYSSMVGSTVNRPEAVALKRRALAERLAAGGPTWLAEREGVAVGLAECAMVLSEPGNSASTRLPPGRWGYVNCVSVLPGARGSGVGQQLMAHVHRELHLMGAVGTYLYYNPPNPLSSVFWPRQGYRPLWTMWEVRPAGALR
>NC_013093.1|WP_015804226.1|6559191_6560022_+|class-I-SAM-dependent-methyltransferase
MSDQHVSAERALGTTGVAQRFADAEESRSANRLWWDADADDYHAEHGDFLGAADFVWCPEGVRESEAGYLGRVTGKRVLEIGCGSAPCSRWLAAQGAEPVGLDISAGMLRHAVAAAGRTGIAVPLVQASADQLPFADASFDAACSAFGAVPFVADVASVFGEVARVLRPGAPWVFAVNHPMRWIFPDDPGPAGLTVTHSYFDRTPYVEVDDEGRATYVEHHRTLGDYVRALVASGFELVDVVEPEWPAGHTRTWGQWSPLRGRLFPGTVILRTRRT
>NC_013093.1|WP_015804225.1|6557512_6559000_-|30S-ribosomal-protein-S1
MSTDTTTVPAAVAPKQVAINDIGTEEDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVVKGGLILDIGLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWRQFARTHAIGQIVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMVKVIDIDLDRRRISLSLKQANEGFTVDSEFDPTQYGMAAEYDDQGNYIYPEGFDPETQEWQDGFDKQREEWERQYAEAHTRYEAHMKQVAKAAAAEEEAAGETNYSSGGDAPAASSGGAPAQAGGTLASDEQLAALREKLSGGM
>NC_013093.1|WP_015804224.1|6556596_6557217_-|hypothetical-protein
MAGARVVVVGLAVAAVLGCASCARVVEKPIVDPAIPTITVPTTTTRVPVMVDRPLPDDCELVVPADVLNERIGRDLGGSTVQIIGIPEPGVGRTAKLDCYYGVGENRGIATAPIVIGLSTYADDAAATTRVAESLDAYRGDGASVSEVEVGKQKAALVLAKDENLVVGSFGKSTFVARAKQDAVPEDQVKAVLTALAARSMTPEEG
>NC_013093.1|WP_015804223.1|6555371_6556556_-|dephospho-CoA-kinase
MLRVGLSGGIGSGKSTVAGRLAEHGAVVIDADQLARRVVEPGTDGLREIAEAFGSSVLTSAGRLDRAALAGQVFADDTARARLNAIVHPKVAALTAELIASAPEDSIVVHDVPLLVENGLAPAYHLVVITHADVEQRVARLVGARDMPESDARARVAAQAGDDARRAVADVWLDNTGSPDQVLAAVDALWADRLVPYAANLRLRRHASGPPKVVDPDPTWPAQAARIAARLRTAVGDRPLEHIGSTAVPGLVAKDVLDFQLGVSSMAEADGLADALLNAGFPNVPGLTDAPRGAEQDPELWDKRVHSSADPGRRVNLHVRVTGAPNWVWALRFRDWLRADAAAREEYARVKLGLMPEHENHDGSLAYAEAKEPWMEEAVSRIAAFYRAAGDQRS
>NC_013093.1|WP_015804222.1|6554880_6555402_+|hypothetical-protein
MGTVITPQLVDVVDTVSAVRNYSSGASRRLTTCQVEDWGLRLECPTPEDPFTDSEVTWLMPDLGLRLTRRRPRAPHTDSSSVLTAVRVVRDGRTWRTTDLLLGLEVPGGTTARIVRSEDFAAAISGGVISPADADLALRTVHRTLEQVSQHRHDLADWLVNRGIYDRWSPAAR
>NC_013093.1|WP_041838406.1|6554220_6554733_+|DUF402-domain-containing-protein
MHVHPPKIEYFDLDAKSNTDPKGYLRGVEEYRLTPAGLYMSRPVPGHPELTHFESWLLPRHGLRVTRQSWHPGRERDYDFYVDVVEITSSGSVWKTVDLYLDLLVRTGRDVVVLDTDELLAAVASGRLEAERARWALETTYTAVAGVAAHGNDLIRWLAEQGTVTTWRRR
>NC_013093.1|WP_015804220.1|6552767_6554081_-|hypothetical-protein
MFGILRPCRHRLGQHLGDAWIAHLCGLCLALRDDHGHLARLVTNYDGLVVSALVEAQSGGSHRDAGPCALRGMRSARVATGPSARLAASVSLVLASAKVADHVADGDGAFGRAGGRGVGRAVARRWAAQAAETGADLGFDTSVLVSAVLRQQEVEAAAGLGSSVLLVTAPTEEAAGAALAQTALLAGRPGNAEPLREVGRLFGRVAHLVDAVEDVARDRASGAWNPLLATGVSPAEARRLCDDAVLGVELALREVELADGALVHALLVHELRRAVGRAFGDEHAHGDRGGHEHPRPGLPGYGEHAPVAHAPAPPDHDSPGDRPPTDPPDEPPGGGGGEGGGGVPPEPGSFLWAWPKLTDPPTSRGLLPGCLAVLYQCGTCQTCCREPMPGPWSGKPRSGCSDGCGGGDCLDSCTGCCRCHADCKKGGCDCCDCCSCD
>NC_013093.1|WP_015804219.1|6550511_6552683_-|excinuclease-ABC-subunit-UvrB
MATTPSDTQAPETPVKAHSAHRPVSDIPRSAGEFRVVSEFTPSGDQPAAIAELERRLRGGERDVVLLGATGTGKSATTAWLVEKVQRPTLVMAPNKTLAAQLANELRDLFPENAVEYFVSYYDYYQPEAYIPQSDTYIEKDSSVNEDVERLRHSATMSLLTRRDVIVVASVSCIYGLGTPQAYLDRSIPLRVGGEVDRDVLLRALVDVQYARNDIAFNRGTFRVRGDTVEIIPSYEELAIRVEFFGDEVDRLYYLHPLTGDVVKEVQELRIFPATHYAAGPERMEIAIKGIEVELEQRLADLERQGKLLEAQRLRMRTTYDIEMMRQVGFCSGIENYSRHIDGRDAGSAPATLIDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRNLVDHGFRLPSALDNRPLTWEEFADRVGQTIYLSATPGNYELGQAGGEFVEQVIRPTGLVDPQVVVKPTEGQIDDLVHEIRARAERDERVLVTTLTKKMSEDLTDYLLELGIRVRYLHSDIDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAARNVSGEVHMYADRVTDSMRNAIEETNRRRAKQVAYNEERGIDPQPLRKKITDILEQVYAEVEDDVAPGGSGRNATRGKRAAGEPGKAGSSGVLAGRDVGSMARAELADLVQQLTDQMMNAARELQFELAGRLRDEIADLKKELRGMDAAGLK
>NC_013093.1|WP_015804218.1|6549462_6550446_+|ABC-transporter-permease
MSDDKASPTTSGGDSRDNNSRDNGVHTDPHGASDLAEAVRAERPGVEADGSRTGYRASRTLPIRVELVRQLLRRRTQLVLGFLVLLPVILVVAFELGEDAPNRRSGGFVDLATASGVNFVVLTLFVCSSFLLPMIVALFFGDTIASEASWSSLKYLLAAPIPRHRLLRRKAAASGILSVLSLLVLPGTALLVGVLWYGAGELVSPTGEAAPFADGVLGVFLAVCYISVQLFWVAGLALYLSVSTDAPLGAVGGAVLASILSQILDQITALEDLRNYLPTHYALAWMDLLSTDIDWSQMAKGVFSALAYGALFSFLAARKFSTKDITS
>NC_013093.1|WP_015804228.1|6561708_6562344_+|hypothetical-protein
MRINARRVGVTGAHGPLLRPTSLAITPGEPLLVAGDPGDGHTAFALVVSGRMRPSTGEVDVPARELRARVALVDSPDVTAPEPALSLAAVVGEELAVNRRPSGRKAVHDWLAAQHADHWAAARFENVPAAVRCALLLELAAERPGVDTLVLDSPDRHHPDPAAWWALARERATPERSVVVLCTTASAALLGVPAARLGADNSPQTQSENEL
>NC_013093.1|WP_015804229.1|6562340_6564236_+|YhgE/Pip-domain-containing-protein
MTSLRMALNELRRVTSGRLPRLAVVALALVPLLYASMYLYANKDPYSHLDNLPAALVVADRGSDDGSGATENAGREVADELLRGHKFDWREVGGGDAERGVRDGEYAFALTLPEDFSQALTSSGRFTPRQGVLVLTTNDANNYLGSTIANQVVSEVRRSVSAKVGTQAADRFLLGFSTVREKTEQAAKGATELADGQRTALDGARKLADGTGTLANGAAELASGTGQLRSSTADLPRSAQQLADGAKQVSDGAEQAARTAEQYAAEARTLAADLDKVDADLVARLRERGFTDEQVQQVQTALGTVRAPAADANTKVQDTAGQLRTLANGAKKVSDGAAKLASSTPSLTGAIGKLDDGAKQLSGGAGQVRDGAGSLREGEQKLVDGTEQLRSGLTEGVEQIPHPDDPTRESTAGTIGDPVTVRGVSQTSAGSYGAGLAPFFLSLATWIGAFVLFLLLRPLSRRGLASGQAAVRVALGGWLPGALLGVAQVVVMYSVVTLVVDIRPSHPVGALLFLFLASVTFVAVLHALNALLGAVGKFLGLVMLILQLVSAGGTFPWQTIPEPLYPLHHGLPMSYAVDGLRHLMYGGELGPVWSDATVLGCYLVGALALSTLAAYKQRVWTPSRLKPELVL
>NC_013093.1|WP_118947648.1|6564196_6564844_+|TetR/AcrR-family-transcriptional-regulator
MDALSPQAGTRAVTAAASPGRPQATRPRRTAATKQKLFDAALRLVGERGAAGVTVDEIAAGAGVAKGTVYYNFGSKDALVDAMLRHGVDLLAERLRVSEDAEPPEAVAALVEGMLGFFGEYPAFAQLLVSELWRTPGQWHGTLSLLRDDIVSIVRAQVQRLADLGRLPDGVQVGTASAALFGTLLVVALDWQVFQPERELAEVRDSVLALVRGLT
>NC_013093.1|WP_118947649.1|6564889_6565507_-|hypothetical-protein
MERAVGIGSALVLGGTGMLKGCSDELVEQGWQVVLPSRRARLAPGQAVREAVRRRGHVPTPRASAGGTGGSVVEVAADWSRPQELAGLVGDALLRPAGLLVAWVHDSYRVPVLEAVAPLLEAGAPVVEVHDISAVSPTGGLPEPVLPGHPTQQVVLGFVRRDGRTRWLSHEQTASGVMEAVRRALAGDPPSVRQVGEVDTWEVRY
>NC_013093.1|WP_143761193.1|6565584_6566187_-|AAA-family-ATPase
MLGPSDELPLTPRRVLVAGTSGSGKTTLSGRIGESLGLPHVELDSLFHGPGWQPRAEFADDVRALAARPRWVTEWQYHDARPVLAARADLLVWLDHPRATALRRLVWRTVRRRVAGTVLWNGNVEPPLYTVFTDREHVVRWAWNAHGRTRHHVDVLRASGGPAPVVVRLRGQREVDEWRSGPLRRVAGYGPDGRATPAER
>NC_013093.1|WP_015804233.1|6566484_6567720_-|Gfo/Idh/MocA-family-oxidoreductase
MRRYAVVGTGARARVHVAAVERYGVLVGLADPNPVRIAAHNRLLAAPVPAYRAADFTTMLAEQSVDVAVVTTVDRHHAHYVVAALEAGCDVITEKPMTTDPEGAAAVADAVARTGRRVDVAFNYRYHPVHERVAGLLAGGVVGRVGSVHFEWFLDVRHGADYFRRWHRDKASSGGLLVHKSTHHFDLVNWWLGAAPVSAYAQGSLFFYGEESGKRHGRHRDYARVHGSPEADGDPFALHLAEDGWLRELYLDAEPEDGYRRDQNPFAPGVTIEDDLAVLVRYDTGASMTYHLTAYSPKEGYRVVFNGDAGRLELEVVETSWVSGQHAAGEPGWVRLTAQPLFGRASELPTEHGGGHHLADQRMTAQLYGPPIPDPLGRRADHTDGIRSLLTGFAANRSLTTGQPVAVADLL
>NC_013093.1|WP_015804234.1|6567753_6567945_-|hypothetical-protein
MPMPMPVPVLMLVLALVPVAGPGAGASAGDRAAVAVAVAVAVAVAVAVAGTVPGRAWPVRACG
>NC_013093.1|WP_015804235.1|6568950_6571617_-|DNA-polymerase-I
MSTSEASRLLLVDGHSMAYRAFFALPAENFQTATGQTTNAVYGFTSMLINLLRDEKPTHIAVAFDVSRRTFRTEAYPEYKAGRSETPDEFRSQVSLIQDVLTALAIPFLSKENFEADDLIATLATQATALGQKVLICTGDRDALQLVNDDITVLYPVKGVSELARYTPELVLEKQGVPPSLYADYAAIRGDSSDNLPNTPGVGPKTIVKLLGQFGDLSGLVEGVDQVKGKVGESLRANLANILLNRQLTELVRDVELPLGPEDLAAKAWDRDAVHRLFDQLEFRVLRDRLFATLSSAEPEAEEGFEVSGGELAEGGLAAWFQAHAGARVGVASRESDGEVEGLAFAVGGEGGYVRLAALTPDDETALADWLASDAPKAVHDAKPLLHRLRARGLRLGGLTSDTALAAYLVRPGQRSFSLDDLVLRHLQRELRAEEPGGGQLSLLDEEEDESGKAATAAIVRASAVAELADVLDTELHRTGQEGLLADLELPLLALLAEIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEINLGSPKQLQVVLFDELGMPKTKKTKTGYTTDADALQSLFESTQHPFLQHLLAHRDVTRLKTTVDGLLKAVADDGRIHTTFHQTIAATGRLSSTDPNLQNIPIRTDEGRRIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGEVTAEQRRRVKAMSYGLAYGLSEYGLAQQLRIPAAEAREQMEAYFSRFGGVRDYLQSIVEEARKKGYTETILGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAAVESLVREHMGNAFQLSVPLEVSVGVGRSWDEAAH
>NC_013093.1|WP_015804236.1|6571671_6572082_+|hotdog-fold-thioesterase
MTTPDQLPGLNQAFADEQLMTRMGIEITRWDGDEMVGTMPVKGNRQPYGLLHGGANAVLAETLGSIAAATHAAPDRVAVGLELSCTHHRSAREGLVTGVCKPVHRGRSTATYEIVVSDEDGKRLCTARLTCFLKEV
>NC_013093.1|WP_143761194.1|6572104_6572605_+|DUF4352-domain-containing-protein
MLVALLAGCASAPEPPPPAYRVPVEAPRPDEVVLDVPTTSDGDTAFTLLGLTTGLDVVIGSHAEWRARGRFARVRMIVVNTGRSSVLFDARRHVLVDERGGEHPQDAQAMTIKRQPERVDLGAGVRLEYDAYFDVPEGARPVALRAFGGPTLTDLRDLEGAEIRFG

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Crispr_ID: NC_013093_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_10

6873360-6873467

Orphan

Consensus_repeat	Method
GCCGCCGGGGCCTTGGGGGCCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_10

>merge|NC_013093|10|6873360-6873467|CRISPRCasFinder
GCGGCCGGAGCCGCCGGGGCCTTGGGGGCCTGCGCGGCCGGAGCCGGAGCGGCCTGCGCGGCCGGAGCCGGGGCGACCGGGGTCGCCGCCGGGGCCTGGGGGGCCTGC

>NC_013093|10|9|6873360-6873467|CRISPRCasFinder
GCGGCCGGAGCCGCCGGGGCCTTG	GGGGCCTGCGCGGCCGGAGCCGGAGCGGCCTGCGCGGCCGGAGCCGGGGCGACCGGGGTC
GCCGCCGGGGCCTGGGGGGCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015804522.1\|6862929_6863409_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_013093.1\|WP_015804534.1\|6876394_6876835_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NC_013093.1\|WP_015804531.1\|6874270_6875284_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NC_013093.1\|WP_015804529.1\|6870317_6870614_-\|DUF503-domain-containing-protein	unknown	unknown	gnl\|CDD\|377364
NC_013093.1\|WP_049796992.1\|6880465_6881545_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237605
NC_013093.1\|WP_015804520.1\|6862076_6862346_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_013093.1\|WP_187313455.1\|6873891_6874248_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NC_013093.1\|WP_187313579.1\|6875984_6876398_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NC_013093.1\|WP_015804538.1\|6879924_6880332_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NC_013093.1\|WP_015804536.1\|6877984_6878986_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NC_013093.1\|WP_118948506.1\|6865055_6865892_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_013093.1\|WP_015804528.1\|6869848_6870298_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_013093.1\|WP_015804537.1\|6879087_6879876_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|237189
NC_013093.1\|WP_049796991.1\|6867438_6868770_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NC_013093.1\|WP_015804525.1\|6866027_6867347_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NC_013093.1\|WP_015804521.1\|6862471_6862933_-\|2'-5'-RNA-ligase	unknown	unknown	gnl\|CDD\|274058
NC_013093.1\|WP_015804523.1\|6863509_6864442_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_013093.1\|WP_118948507.1\|6868827_6869829_-\|DHH-family-phosphoesterase	unknown	unknown	gnl\|CDD\|223691
NC_013093.1\|WP_015804532.1\|6875280_6875805_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NC_013093.1\|WP_143760943.1\|6877029_6877797_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015804522.1\|6862929_6863409_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000207021
NC_013093.1\|WP_015804534.1\|6876394_6876835_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	2.86621e-31
NC_013093.1\|WP_015804531.1\|6874270_6875284_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NC_013093.1\|WP_015804529.1\|6870317_6870614_-\|DUF503-domain-containing-protein	gnl\|CDD\|377364	pfam04456, DUF503, Protein of unknown function (DUF503). Family of hypothetical bacterial proteins.	2.05692e-33
NC_013093.1\|WP_049796992.1\|6880465_6881545_+\|hypothetical-protein	gnl\|CDD\|237605	PRK14086, dnaA, chromosomal replication initiator protein DnaA.	5.81631e-05
NC_013093.1\|WP_015804520.1\|6862076_6862346_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	5.98544e-50
NC_013093.1\|WP_187313455.1\|6873891_6874248_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	3.80623e-24
NC_013093.1\|WP_187313579.1\|6875984_6876398_+\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.00829874
NC_013093.1\|WP_015804538.1\|6879924_6880332_+\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.65601e-30
NC_013093.1\|WP_015804536.1\|6877984_6878986_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	1.25282e-30
NC_013093.1\|WP_118948506.1\|6865055_6865892_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	2.17657e-155
NC_013093.1\|WP_015804528.1\|6869848_6870298_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.49603e-43
NC_013093.1\|WP_015804537.1\|6879087_6879876_-\|SDR-family-oxidoreductase	gnl\|CDD\|237189	PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	6.85582e-50
NC_013093.1\|WP_049796991.1\|6867438_6868770_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.66704e-103
NC_013093.1\|WP_015804525.1\|6866027_6867347_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.61106e-24
NC_013093.1\|WP_015804521.1\|6862471_6862933_-\|2'-5'-RNA-ligase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	6.17594e-22
NC_013093.1\|WP_015804523.1\|6863509_6864442_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.69e-153
NC_013093.1\|WP_118948507.1\|6868827_6869829_-\|DHH-family-phosphoesterase	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.5867e-50
NC_013093.1\|WP_015804532.1\|6875280_6875805_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	5.97389e-45

>NC_013093.1|WP_015804529.1|6870317_6870614_-|DUF503-domain-containing-protein
MYVGALELDLLLGDVHSLKQKRSVVRPVVAELKRKFEVSASEAGHLDLHRRALIGVAVVAADAEHVRDVLAACERLVAGRPELELLSARHRLVGPEDV
>NC_013093.1|WP_015804528.1|6869848_6870298_-|30S-ribosome-binding-factor-RbfA
MADQARARKLAKRISQIVASALEHQVKDPRLARVTITDTKVTGDLHDATVYYTVLGEKLDSEPDLAGAAAALEKAKGVLRSMVGQQTGVRFTPTLTFVTDTVPDEARKMDELLAKARELDAEVARIASDAKPAGEADPYKAAREVEESD
>NC_013093.1|WP_118948507.1|6868827_6869829_-|DHH-family-phosphoesterase
MNAAVAAAARVLERARDVTLLGHVNPDADALGSALALGLALHRRGATVRVSFSEPAEVPRSLAGLDVAGLLVPPSQVPERPEVLVALDSGSVGRLGHLGGRIATAEHVVVIDHHVSNPGYGTINIVDDRAEATAVVVLRVLDELGVELDEPVARCVYAGLVTDTRSFRHATESTHLVAARLIAAGVDGEALARSLMDSHPFGYLAMLAGVLGRARLEPSAAGGLGLVHAVVTLEDAAGLRSEEVESVVDLVRTTTEAEVAAVLKELRPDRWSGSLRAVSRVDVREVAQLLGGGGHRLAAGFTAAGTAEEVLERLRQALGTVVAAAGEPRDLRR
>NC_013093.1|WP_049796991.1|6867438_6868770_-|MATE-family-efflux-transporter
MIPVEHGGAVVVERVPARRVVGLAAPALVVLAAEPLYVLVDTAVVGHLGALPLAGLALGGVLFTQVATQLTFLSYGTTARTARLFGAGRRAEAVAEGVQATWLALAVGALVIVLGQLLAGPATRLLVGDEVVAAEAVSWLRIALFGAPMVLVTMAGNGWMRGVQDTRRPLRYVLFGNAVSAVLCPLLVHTAGWGLEGSAVANVVAQLLSAGLFLRALVVERVPLRPVPALMRAQLGMGRDLVLRSLAFQACFLSAASVAARTSVAAVGAHQVVLQLWTFLALVLDSLAIAAQSIVGAFLGADRREDAKGFARQVTGYGLVFGSCLGVLFAALSGVIPGLFTGDAGVLGEIPNAWWFFVALQPIAGVVFALDGVLLGAGDAAFLRTATLLSAAAGFLPLIWLSLAFGWGLSGIWTGLSAFMALRLVAVVLRTRSGRWAVPGAAV
>NC_013093.1|WP_015804525.1|6866027_6867347_-|MFS-transporter
MPVDRATRRAWLIWSTAVIVYVAALFHRTSLGVASLEAGERFAVGSAALGAFTVLQIGLYAAMQIPTGLLVDRFGARRVLVAAALVMGLGQTLFALAHSYPLGLAARAVLGVGDALTWVSVLRLAAAHFPPRRFTVVMSLSSALGAIGNLAATVPLTLMLDGIGWTTTFLVAGVATAAYAAVVALKVRETPDGVVQPEPERVRLSVVGRKVAEAWHVPGTRLGFWVHFTTMSTPMLLSLLWGYPYLVEAQGMPAASASAVLSVMVVVGLVSGPVLGGVIARSPEWRMPLVGGYLAVAVGVWAVLLGWPGGVLPQPLLPVAFGLLALGGPASSVAFALVRDYNPLHRVSTATGVANVGGFAAITVMALVIGVLLDVVSFLPPAQAYRVALLSVAAVLVLGTWRTVVWWRRARAAVFAAEDRGEEVPVQIRRGRFDMRLAA
>NC_013093.1|WP_118948506.1|6865055_6865892_-|tRNA-pseudouridine(55)-synthase-TruB
MTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLALDSKAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGAIQQVPSAVSAVKVDGKRAYARVRAGEEVELPPRPVTVHRFDVLSIRREADATELDVMVECSSGTYVRALARDLGVDLGVGGHLAALRRTRVGPFDLRVAKTLEQLADEPGLSLDLDAAVSAAFPRREITPSEVVALSHGQRLRAGGVEGTYGVFGPDGHAVALAKDEGPLAKPVVVLTPAG
>NC_013093.1|WP_015804523.1|6863509_6864442_-|bifunctional-riboflavin-kinase/FAD-synthetase
MQRWRGLDQIPGGWGRCVLTVGSFDGVHRGHQALIRRAVETAAERGVPSVVMTFDPHPAEVVRPGSHPAKLTDLRRRAELVEALGVDVFCVVPFTPELSRMPADEFVHEVLVDRLHVAAVVVGRNFTFGSRAAGNVGLLRELGQRFGFVTEGADLLSDDGVTYSSTYTRACIDAGDVAAAATALGRPHRLEGVVVRGDGRGRDLGFPTANMSLPESAAVPADGVYACWFVRDGHPTMRAAVSVGTNPTFSGKERRVEAYVLDFDDDLYGQTVALDFVARLRGMVKFDGVEALVEQMHRDVADARVQLPDA
>NC_013093.1|WP_015804522.1|6862929_6863409_-|helix-turn-helix-transcriptional-regulator
MEDHKIVQRNLALQREWYGEPLGDRVRRLVVAFNVSQAQLAEVLGISAPMLSQVMSGRRAKIGNPAVLARMIMLERKVLTPDVATGAPEALQRALDEVRDSKPTVSRDSLPVNGADDETALLPYLRRIADRRELFQAADVLGEDFPALADLLRRAGRAR
>NC_013093.1|WP_015804521.1|6862471_6862933_-|2'-5'-RNA-ligase
MRLFTALFPPPEAVAELERALAEVRPGYPELRWSPSERWHITLCFHGEADPAGKLDPFEGMSAPSVRFSGCGHFPGVLWIGVEGAVEPLAKAAGALPDWQAHVTVARSRRAKRFPRLDFTGAEWTASEVALVRSELGVGYTVLERVQLATPSA
>NC_013093.1|WP_015804520.1|6862076_6862346_-|30S-ribosomal-protein-S15
MALTTEQKKTILTEYGVHDTDTGSAEAQVALLSKRIADLTEHLKKHKHDHHSRRGLLLLVGRRRRLLDYLKKSDIARYRTLIQRLGLRR
>NC_013093.1|WP_187313455.1|6873891_6874248_-|YlxR-family-protein
MVRRQGPVNEHDGPVRTCVGCRARTSYSELLRVVAVAGALAPDPRRRLPGRGAWLHPDPSCLRTAEKRRAFPRALKVTGELDAEGVRAHLEQFGSTAAGSPRGRQQVKEAGRPVMSQP
>NC_013093.1|WP_015804531.1|6874270_6875284_-|transcription-termination/antitermination-protein-NusA
MNVDIAALRAIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVLAQDLGPDGVVTEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFGEFSAKEGEIIGGVVQRDARANARGMVVVQVGDTEGVLPPAEQVPGEEYKHGARIKCYVVGVSRSARGPQITLSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSVPGVNAKGACIGPMGARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDERAKTARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRSDAEAVQKDSAASGSAE
>NC_013093.1|WP_015804532.1|6875280_6875805_-|ribosome-maturation-factor-RimP
MSSPPRGELAAQLTPVVREAVEAIGYDLELLDVNQAGRRRLVKVVVDGDEGIGLDEVAQASRAVSAALDANEHLIAGPYTLEVTSPGADRPLTRPRHWLRARLRLVKVKQPEQVEWFGRVGDCDDTGVVLLVKGELRRVEYSAIERAVVEVEFKQPPVEELALLGDRGSKEESE
>NC_013093.1|WP_187313579.1|6875984_6876398_+|hypothetical-protein
MLLAAASAPLVVACTSTPPAPPPPDPLAALADAALEDAALATAVDAQETAAARTEHAARLRAEVERATPSTPSSSAAPSTTSSAPQAPAGATREQLAAALQAAQKQAADLLPSLPAHRAGLVGAVAAGCASLVEALG
>NC_013093.1|WP_015804534.1|6876394_6876835_+|ferritin-like-domain-containing-protein
MSDQASADAVQVGLGAEHAAVWTYGLVSAFLPKAQEAVVAEGANAHRARRDTTERWLRDAGQQPKPAAAAYLPPEGVQDAASSIAALVAVEADCCAAWRGVLERTDDNALRTTALTALTESAVRGTRWRRAAGLTPVSIALPGVPE
>NC_013093.1|WP_143760943.1|6877029_6877797_-|hypothetical-protein
MPGHQGPPHPGGPPPYGGYDQGFRPPPPPPRGAPGGQARSHPATAPGLSAVPFQRRTAVVRIIGLVGIAVVSGLVWMMFQSGEGPKSSSGSPTPSSASQVPAGEFEFTPSTQAPAPRRDAECASHAYGQAKDFFTKTPCEELIRALYTTTAAAGGAKVHTSVAVVRMKSAADATALMELTNRDGTGNVNDLVKDGAVKVDGITTLGGGGYASTLSDRDVVIVESDTAKADNTGAGHTDLMRRISADALRLAAGLG
>NC_013093.1|WP_015804536.1|6877984_6878986_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MRTAFGETFDVPPGYLNTASVGVPSTSTARAVSEAVARWARGADAPPVFDEPVAVARAAFGRIVGAPAERVAIGATVSQLVALVAASLPEGARVLVAKGDFTSLTFPFAARGHTVTEVPLDDLPARAADHDLVAVSVVQSADGRLADLAALRAAGVPVLLDATQAAGWLPLELDWADWVVGTGYKWLLSPRGTAWLACSEAALARTAPLVANWYAGDDPWTTVYDLPLRLAADARRLDLSPVWHAHVGAAVALPWFASLDRAAVHAHTTGLADGLRAGLGLPPAGSAIVSLDVPPEPLLAAGVAASTRAGRVRLAFHLYSTRDDVDRVLRALA
>NC_013093.1|WP_015804537.1|6879087_6879876_-|SDR-family-oxidoreductase
MIENVPHTAIVTGANQGIGAAIATALAARGVQVLAAYFRFTPLPDPSLPDRYAADRGSDATAVVRAIEAAGGRVLAVEADLADPQAPARLFDTAERELGPVDVLVNNASAWVQDTFLAAGLDQFGRTTAPVSAETFDAQFAVDARAGALLIAEFARRHLARGADWGRIVGLTSGGPGGFPSEVTYGAAKAALDNYTMAAAVELAPHGVTANCVKPPATDTGWVNDAVRASTRIAEPHEVADVVAFLCSEEAKLVTGNVVTLR
>NC_013093.1|WP_015804538.1|6879924_6880332_+|YjbQ-family-protein
MLSEEIEIRTGSDEVVLDLTAHCERFLAKTSGDGLLHVWVPHATAGLAVLETGAGSDTDLLAALRDLLPADGRWRHRHGTPGHGRDHVLPALVPPHATVPVLGGVMALGTWQSVCLVDTNVDNPVRKVRFSFLAG
>NC_013093.1|WP_049796992.1|6880465_6881545_+|hypothetical-protein
MTYPGDGQSGWGGQAGQPHQGGWGQDGVGGSTPQPGQPQQHYPDHSFGAPQPGYGDQQPYPQPGYGDQQGYPQPAYGDQQGFPQQGFGSYGGLGVFSGGEEPPRRSTKGKVWLAVGAVALLLVGGGATAYVLTRPEDGKTTVAASSSQAAPSSSAASSPAPTSPSAQAATCAAVTSGWNCLPVTDLAYSYDVPKSWAPQKGSSPVTNLDARLTGLSMFGVYTCEGRSYNRGNAGGTLISNTDLAGVAKDVADKVARYFYSSAPELDVKLTDPKEVTVPNVGGGQPIPAVQVDATITAGGNACIASKGMVRVLAARGERATHVFMANGDLAGGPDSAPASPTEGDLQAMIDSVRPLAVGG

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Crispr_ID: NC_013093_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_11

7290579-7290688

Orphan

Consensus_repeat	Method
GTGTAGCCGGGGTTGTTGGTCGGGTTCGTGTAACCGGGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_11

>merge|NC_013093|11|7290579-7290688|CRISPRCasFinder
GTGTAGCCGGGGTTGTTGGTCGGGTTCGTGTAACCGGGGTTGGTCGGGGTGTACCCGCCGGTGTTGCCGCCGGTGCCGGTCTGGTAGTTCGGCGGCGTGTAGCCGGGGTT

>NC_013093|11|10|7290579-7290688|CRISPRCasFinder
GTGTAGCCGGGGTTGTTGGTCGGGTTCGTGTAACCGGGGTT	GGTCGGGGTGTACCCGCCGGTGTTGCCG
CCGGTGCCGGTCTGGTAGTTCGGCGGCGTGTAGCCGGGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015804899.1\|7277555_7279037_+\|DUF4173-domain-containing-protein	unknown	unknown	gnl\|CDD\|379362
NC_013093.1\|WP_015804900.1\|7279228_7280404_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_013093.1\|WP_084799284.1\|7276483_7277455_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013093.1\|WP_041838527.1\|7300374_7301118_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_013093.1\|WP_015804903.1\|7285108_7286764_+\|FAD-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|183782
NC_013093.1\|WP_015804907.1\|7289246_7290017_-\|ESX-secretion-associated-protein-EspG	unknown	unknown	gnl\|CDD\|379414
NC_013093.1\|WP_015804912.1\|7298024_7300133_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NC_013093.1\|WP_015804917.1\|7303969_7305121_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NC_013093.1\|WP_118948530.1\|7291817_7292198_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015804902.1\|7281701_7284941_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173796
NC_013093.1\|WP_015804919.1\|7307057_7308659_-\|acetyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|178415
NC_013093.1\|WP_015804918.1\|7305126_7307058_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NC_013093.1\|WP_143760972.1\|7280457_7280994_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_049797009.1\|7295606_7297481_-\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|379196
NC_013093.1\|WP_041837145.1\|7302840_7303602_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236205
NC_013093.1\|WP_118947847.1\|7292420_7295162_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276938
NC_013093.1\|WP_015804914.1\|7301254_7302844_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|183199
NC_013093.1\|WP_015804904.1\|7286798_7287638_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182137
NC_013093.1\|WP_118947845.1\|7287761_7288499_+\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224996
NC_013093.1\|WP_015804906.1\|7288502_7288979_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015804899.1\|7277555_7279037_+\|DUF4173-domain-containing-protein	gnl\|CDD\|379362	pfam13777, DUF4173, Domain of unknown function (DUF4173). This domain of unknown function contains multiple predicted transmembrane domains.	1.12309e-70
NC_013093.1\|WP_015804900.1\|7279228_7280404_+\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.89585e-18
NC_013093.1\|WP_084799284.1\|7276483_7277455_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.55151e-57
NC_013093.1\|WP_041838527.1\|7300374_7301118_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	7.44614e-68
NC_013093.1\|WP_015804903.1\|7285108_7286764_+\|FAD-binding-dehydrogenase	gnl\|CDD\|183782	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.	0
NC_013093.1\|WP_015804907.1\|7289246_7290017_-\|ESX-secretion-associated-protein-EspG	gnl\|CDD\|379414	pfam14011, ESX-1_EspG, EspG family. This family of proteins contains the the EspG1, EspG2 and EspG3 proteins from M. tuberculosis. These proteins are involved in the ESAT-6 secretion system 1 (ESX-1) of Mycobacterium tuberculosis which is important for virulence and intercellular spread. Proteins in this family are typically between 254 and 295 amino acids in length.	6.52419e-49
NC_013093.1\|WP_015804912.1\|7298024_7300133_+\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	1.11184e-50
NC_013093.1\|WP_015804914.1\|7301254_7302844_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	3.25178e-171
NC_013093.1\|WP_015804902.1\|7281701_7284941_+\|S8-family-serine-peptidase	gnl\|CDD\|173796	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.	8.7137e-58
NC_013093.1\|WP_015804919.1\|7307057_7308659_-\|acetyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_013093.1\|WP_015804918.1\|7305126_7307058_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_013093.1\|WP_015804906.1\|7288502_7288979_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	5.24644e-40
NC_013093.1\|WP_049797009.1\|7295606_7297481_-\|FAD/NAD(P)-binding-protein	gnl\|CDD\|379196	pfam13454, NAD_binding_9, FAD-NAD(P)-binding.	6.44828e-39
NC_013093.1\|WP_041837145.1\|7302840_7303602_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	1.34966e-146
NC_013093.1\|WP_118947847.1\|7292420_7295162_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	5.64458e-34
NC_013093.1\|WP_015804917.1\|7303969_7305121_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	2.10639e-165
NC_013093.1\|WP_118947845.1\|7287761_7288499_+\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	5.35008e-42
NC_013093.1\|WP_015804904.1\|7286798_7287638_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182137	PRK09906, PRK09906, DNA-binding transcriptional regulator HcaR; Provisional.	4.53097e-32

>NC_013093.1|WP_015804907.1|7289246_7290017_-|ESX-secretion-associated-protein-EspG
MIEPEYLLTPRQLDVLWQDLGLGRLPYPLDVPSLGATEAERARLREQVLAELGGQPDHRLVSLLRLLADHRVSVDAIAHVERPIRAVAVSDGDRAALAVIDSGSVGLLEIRPTSLARSIVEVLPAGAAGPGSSLSLRVETMSAAVAMQGQSDGDEDDPWGDSEVDERTALQRAGLSREDATALSELAANRKAGGQFGVSHGGGGGYRAQRAGVTITWFDTHQGRYLMVRENGWLSLAPTDNDRIASRIDSVLAGVA
>NC_013093.1|WP_015804906.1|7288502_7288979_-|flavin-reductase-family-protein
MVESSLGLRGVFRDFPQGVGIVTATGGDGPVGVTVSSITSASLDPPLVVVWIGQGASAWPVLRTAPLFALHLLHAGQTALSDLFARSGADRFGQATRWEPDGDGVPHLLDAPARLRCRTSRRIVVGDHVALVGEPLAIEHTAGTSPLVRFQGRYTSVA
>NC_013093.1|WP_118947845.1|7287761_7288499_+|NAD(P)-binding-domain-containing-protein
MSTTTLGVIGSGMVGAGVARRAVDAGLRVVLANSRGPESLAALVAELGGRARAATPAEAALAGEVVVAAVPLTALDRLPVAELAGKVVVDPMNYARKPGWENPELDRDELTSSELVQRALTGARVVKALHNIGPRQLLRLHRPDGAPDRTALPLSGDDPAAKAEVAALLAALGFDAVDLGPLAESWRSEPNTPLYAVPYTGLPPEGLPIAEVVAWFQAADGVPLPASRVRELAASTTRPRAGFQL
>NC_013093.1|WP_015804904.1|7286798_7287638_-|LysR-family-transcriptional-regulator
MELRALHYFVTVAEELHFGRAAERLRIVQPAVSQQVARLERELGARLLDRTSRRVRLTPAGERVLAAARETLAAAARVRVVAGERGAVVRIGLASCVDARVDRALGRLGDVEPELVDLPVPARLAAVRAGELDVALVRGAVRSGDDLRVARAWGERLHAVLSHEHPAAGAPSVSLADLSPEGLRLPAREADPPLHDAILAALPTAPRRSPSGDLMNALYEVARDPAGWALLPEGQVANVRPGRVVPVPVDPPLEVDGHVVASVVTPASCLASYVAAFGD
>NC_013093.1|WP_015804903.1|7285108_7286764_+|FAD-binding-dehydrogenase
MAHDADVIVVGAGLAGLVAASELVDAGRKVLLLDQEPEASLGGQAWWSFGGLFMVDTPEQRRLRVRDSSALALQDWLGSAAFDRPEDEWPKRWAEAYVDFASGEKRAWLHGLGVRFFPLVQWAERGGYLAGGHGNSVPRFHVTWGTGPGIVEPFAKRVRQAEAAGLLEFRFRHRVTGLTTTGGVVDGVSGEVLVPSAVERAEPSSREVAGSFELRAQAVVVTSGGIGGNHELVRRNWPARMGTPPEHMLSGVPDHVDGLMLQVVNEAGGRIINEDRMWHYPEGIDNHSPVWSRHGIRILPGPSPLWLDATGKRLPIPLFPGFDALGALEHIVKTGHGHSWFLLNQRIIGKEFALSGSEQNPDLTGRDVKMLLKRVLPGAVTPVEVFAKRSPEFITGRTVAEVVAGMNALVGEDLVDAAELQRVVVERDRQVLSGLGKDMQVNAMREARKFLTDKVMRVVEPHALLDPKAGPLIAVRLSVLTRKTLGGLHTDLSGRVLTQDGSVLEGVYAAGEAAGFGGGGVHGYRALEGTFLGGCLFSGRTAGRAAAKALG
>NC_013093.1|WP_015804902.1|7281701_7284941_+|S8-family-serine-peptidase
MNNSGRRWRHRTGAALLAAVLGTSGIGFAATPALAQEAPQGAPEASKQLDSVDRERIADAERAGQAEVTLLVAAEKGELDSAVDELKALGGTVQSTERDIDYAKVSLPRDKAEKAAKLDTVRAVDVDGLVALDDPRPEGSAAPLPQKAPDAKTPKKNPYLPTQDTQAAQFTDAHSKWDGRGTTIAVLDTGIDLDHPALKTTTTGETKVVDWYNANATNSGDGTWIGMSGRYTADFTVGGVTYKVPRGATYSFGLFRETSGDLGLSNSETGGDLNRDGDRNDAFGVLQDVSTREVRVDVRGDGDFTDDKPMIDYKHKKDVGHFGVDNPATGTVEQVAFVVQTDKSVYDNGGTPYVNIGISAAQHGTHVAGITSANNLFGGKMVGAAPGAKLMAVKVCLSTPSCTSSGLIDGVLYAARNGADVVNISIGGLPPLNDGNNARAELYNRTIAEYNVQLFISAGNSGAGANTVGDPSVASDSISVGSYITKQTWLSNYGSVTKQAEGLHGFSSRGPREDGGFKPDIVAPGSAIATTPQWLPSGPVAGTYELPAGYAMLNGTSMAAPQATGAAALLVSAYKATHDGRRPNAAQLRTAIKTGAKWVSSLQAYEQGAGLFDVKRAWAELNRGVNTQNVTTSVEVNTALDDLLATPGVGVGIHDREGVVAGKEYTRTYTLTRTTGPDKNQQFGLSWKGNDGTFSSGTRVTLPLNKPVQLAVKVKPKTTGVHSAVLEIDNSSTAGVDAMTLNTVFAADEFTAKGSYQVTRTGDLPRNQSQSFFVKVPEGTSALKVDMAAGGDPGKGQVRFLRFDPYGVPFDTTSSTNCYNPDAGAGCSGGTPTSRTVANPTPGVWEIVVEARRTSDADVAKYSVTASVLGTAITPNPDVIESVVAGTPVERQYQVTNSLATFTGKLVGGPLGSAKVARPTIADGTTAQYDLVVPAGATRLRASIGKTSDVTADLDLLLYNCTSGSCVLYVQSADADSEEAVSVANPAPGAWRVVVDGYAVPAGTTEYDYLDVFTAPSLGSVAVADTDAVRTAGATWTATGAVTANAKPGDGRELRGELGVLTSDGVPVGSGVVVVRNVA
>NC_013093.1|WP_143760972.1|7280457_7280994_+|hypothetical-protein
MRRFGGTGLGRAGLGGTGLGALVLGAVAAVVVGCSAGGGGASSPPPSPPQERGTVSTSGTLSPQRSTVPSAGTTSAEAPVPEGKSSGDKLTEQGRAALREARRAGAREVELVVVAERGHEAEVVAAAREAGARVLAEDAAVGYARLAVPVERAEAFASLAGVRRVDVDQPVEHRLPEP
>NC_013093.1|WP_015804900.1|7279228_7280404_+|mechanosensitive-ion-channel
MPAPVVTIVTFAGSVLVALVAVALVHRTVARIGRKSELFANLARHLHRPAQVVAALVALQLSLGVTASGEWRPTALHAVGIALILSGAWLLAALLVVLENATLSRVRIDVDDNRHARRVHTQVRLMRRVTVGVVSVVAVAAVLMTFPGARAAGASLLASAGVIGAIAALAAQSLLGNVFAGMQIAFSDALRLDDVLIVEEQWGRVEEITLTYVVVHLWDDRRLILPTSHFLKTPFENWTRTQSALLGTVELEVDWTVPVEEMRQELRHALESTDLWDGRVSVLQVTDALRSFVKLRALVSARDAPSLWDLRCVVREHLVTWLRANHPGALPQVRVRDMPKTTPRRPEVAEPHGDNRVFGESADGEERVQAFSGPTSTQEMQPVRVGVPSSP
>NC_013093.1|WP_015804899.1|7277555_7279037_+|DUF4173-domain-containing-protein
MPEEPEPSAGGKPRNTPPGKPEPTAVTTVEPSPGKHFTPGAPPRRPLTPEDGARRAKAVLAALTAAVVAAVVVPHETHGVGWPIAAVVVLALVGRRVRVGWAALSVLLASVAAFRASGWLFALCLVTGLVTASLAVTGGRTVRGLLWGSFAVPATSLVALPWGASGVAAHRAGGWVRPVVLTCVVLLVFLPLLASADEAFADLVLSVLSQPGAPAPVTAFFGAAAGAGVLAARRLQALPNTSDRPLDPARPVARRDWALPVGALVALFTAFVAVQLRTLFGGDRHVQVTADLTYADYARGGFGQLVVVTLLTLGVLGAVSRFASRATGRDRVWLRALPGALCALTLVIVASAVHRMWLYQRAYGFTEQRVLALAAELWLGLVCLVVLAAGVRLSAAWLPRAVVATAAGAVLALAVANPDLLVAEANVARYEATGRIDQPYLTTLSVDAAPALARLPKELRVCHWPDRRQRWTGWNLAWARWADEPWGAGRCRW
>NC_013093.1|WP_084799284.1|7276483_7277455_+|HAMP-domain-containing-histidine-kinase
MRSIKLKIAAVVLVSWAAAFTFFRIRIGWLAPTTVFGALGIALVISQVVGHGMTRPLREMTWAVGAMRRGDYSRRVRATGRDEVGQLAVAFNEMAADIADAEQRRRELIANVSHELRTPITALQAVLENVVDGVEQADATTMRTALAQTERLGRLVAELLDLSRIDAGAHRLDLSEVDVPELLGSAVAEAAVAAPSTRFAVDAPPGTAVTADRARLHQVVQNLLDNATRHAPPGGEVRITARAVGEVFALAVEDDGPGIAESDRERVFERFTRGERASGGGTGLGLDIARWVVDLHGGAIRVVDAPGCRIEVTLPRHGRPPTG
>NC_013093.1|WP_118948530.1|7291817_7292198_-|hypothetical-protein
MGEEVVALNETVNSGKVSLDPVVGEELRKMLLEQIDQVDSWLERAGRLARPAPLGTNPVSERMKSKFEERAEGDPYSFASVMTSYREVLQQTHDSVQSAIRNFQAIDEEHRDELRRLSGAANLNSN
>NC_013093.1|WP_118947847.1|7292420_7295162_+|tetratricopeptide-repeat-protein
MRVNLLGPVELVSAGGDAVHLGAAKRRTVLAALALELNRVVSGDRLLSLVWDGSPPPQAKAALQGHIAQLRKVLGGGVALVTRSPGYLLTADRSAVDVFRFEDLVAGSRDADDERAAEELARALRLWRGPVLADVASEVLRESVSARLEELRTVAVQELATRLFRLDRAEEAVAALTGAVADHPLREPLVARLVLALHGAGRQAEALELFHRTREQLAEELGVDPGPELREAYQAVLDGGVVATRPVSAPQVSAPAQLPREHRGFVGRACELAALEADLGGQDSAIGLLVGPAGVGKTALALHWAHRVAADFPDGQLFVNLRGFDETEPLDPRTALVGFLRALGVDDSQIAVDLEEQAAQFRSLVAGRRVLVVLDNARSAEQVRPLLPGSARCMVLVTSRLLLDDLVVTEGATSLQVPQLEEGTAEDLLAAALGRHRIEQEPEAVAELVELCDRLPLALRIAGARLASRPRWTIQSLVDELRDEQGRLSGLSLEAGTGVHAALAVSYRELPEAAARLLRRLGLHPGTDLDSYTAAALMDIGVGSARTHLRTLAYANLLHESMPDRYSRHDLVRLFTHHLAATEPEEDNTEATHRLLDYYLHVADLARGHLSDHVQPFEPLSYQPASAPELRSHEAALGWFTLEEANLGLALDIAVGSGLRERTWQLALCLDAFHFRRGNRLDRLALCGIGLTAARALGDKHAEATFLLRLGSTLADLGRIDEAVAACGESAALAIGDRHLELAALANLGYCLMAAGRLAEAEERIRETVEIAREVGDARSRASGLNNLANVLLARGEPELALGHAVEALGLFSGDSPTKAHTATLHTVGAVLQELGRPEEALESYRAGLALAEAIGDRYQEALCHRAIGDVLERLGMAEQAVPHWSEALRRYRDLRLTEGEELSGKVDGPGGA
>NC_013093.1|WP_049797009.1|7295606_7297481_-|FAD/NAD(P)-binding-protein
MRRSPVTAAPHPPGARATVVVVGGGPRASGLLERLGANAPELLARPLEVHLVDPHPVGAGRVWRHEQSPLLRMNSMAEDVTVFTDDSVVCEGPVRTGPSLAEWADLVRSGEIEVPLDDAVRAELTAMRPTSFPSRRVQSAYLSWFHRLAVTRLPEGSTVVEHVGEAVRLTGDQTQSVWLEGKAEPLVADVVVLALGHLDADLTPQESALAAQAKAANLRYLPPDYTADTDLSTVPEAEDVLVRGLGLAFIDLAVLLAQGRGGRFARENGVLRYHPSGREPRLLAGSRRGVPYHSKTGYRLQGAPPEPPRFLDVRALLNRPGPVDFHHDVWPLIAKDVALGFYRELFTAHPDRVTRGWPEFSAAFAALDWYSPRMRALEAESIPSPEDRLDFETSDRPLRGVVLNGPNELQAHLRAHIQSDVTRRGDPTHSADLGAFLALLGVYGALPPLFASGRLVNEDGWWHGFFSFLASGPPPDRLEELLALSEAGVVHFLGGELKVTVENDEFVARSPNTPGTETRAKTLIEARLPDHTLPRTRSPLLRDLVAAGEVLDVAGLVRVDPTDSALLDHEGHPHPRRFAVGPYTNNKAHAAFARPRTNAPGFRQNDAVARAALKALAATPTPPD
>NC_013093.1|WP_015804912.1|7298024_7300133_+|EAL-domain-containing-protein
MKTAGGAGDAPEPRADLGAATAHEGFAQRWAEALPDPAAHLGTLVRLTAGLSSVDGQEPEEAARRVGRALVGHGPARPGVLEGTIAFLAENLRPHLVALHGADHPAASRVPAVLGAVAAGFAEAAAELAADEVREEGEAKFRAVWRTSALAIAEVASDGRVVDHNAALPAILGYPPDRVAGLSAREVVHPDDLPALRRLGGQLLSGERDGVQVEKRLVRADGEAIPAQLAITPVRGRDGDVRCYVAVVEDLDEVRALQLQLVRQSLNDPLTGLANRAQFLGWLESEEGPQGSGSLVVALLDLDGLRVVNGAFGHEVGDRVLRAAVSVLGTVFGGGARIARLGGDEFGVLVTGSDLPSVLDLVEQALRELAEPVWWEERGIGVAASVGVVARTGPGLPDGELLRRAGVALDWAKDSGKTGWSLYDPDRDARERDRSALAASVAGGAEQGDFRVDYEPVHALADRSVVAVEAVLRWDHAERGLVDLRWLGPLLERTGMGLRLDRWALERACAQAGRWYAALGEEAPVLSVDLSVRQCQEPELVAWVRQVLRDTGLPPHKLRFELPERLPSALSEEQVEELNILASHGVLLALDQLGGGNVAVDRIRQLPLSALKFGGPPVRGLAEGANLVDRAAAVALLSWSRQLGLELHAVHVSTSDEARRLRELGVSAGQGVLFNAEPLTGADVAELLGLDPDGDEDPDEDA
>NC_013093.1|WP_041838527.1|7300374_7301118_+|trypsin-like-peptidase-domain-containing-protein
MAALVAALVGGATGGVVGALSAPEAATSTAAASTPVVSTTGVSLNVSAIAEKVLPSVVQVNVATSQSRGVGSGVVLSSDGRVLTNNHVVSGAQQVSVTLDDGRTVQAKVLGADADSDLAVLQAEGVSGLTAATFADSDSVRVGDQVVAIGSPEGLQGTVTSGIVSALDRTVTVPGTGRRTVSYQAIQTDASINPGNSGGPLVNAAGEVVAINSAIYSPTSDGGEAGSVGIGFSIPSNQVRSLIGDLG
>NC_013093.1|WP_015804914.1|7301254_7302844_+|acyl-CoA-dehydrogenase-family-protein
MAHVTHEVLNQVPPLTGHDVADDPALLTALRLGGAGWAEAELRELGVLAGSARVQELGRLANEHPPVLRTHDRWGHRVDEVEFHPAWHELMTTAIGRGLHAAPWRDERPGAHVARAAKFLVWSQVEAGHGCPVSMTYAAVPALRRSPWLAARFEPLLASPEYDFGLRPPESKRGLVAGMSMTEKQGGSDVRANTTRAVRSGDHHVLTGHKWFTSAPMSDLFLTLAQADEGLSCFLVPRVLPDGTRNAISLQRLKDKLGNRSNASAELEYDGAVGWLVGEPGRGVRTIIEMVNATRLDCVLGSAAGMRAGLVQAAHHAAHRRAFGAALVDQPVMRAVLADLAVESEAATTVGLWLAGSRGRLGLAVAKYWVCKRGPAHAAEALECLGGNGYVEESGMPRLFRESPLMSVWEGSGNVAALDVLRVLAREPDAVVEFTAELDAAAGADRRLDAAVRELKAMLVEPDPESRARRLVERMALVLQGSLLVRHGHPAVADAFCASRLAGDWGVAFGTLPAGVDAKAIVERAVPGR
>NC_013093.1|WP_041837145.1|7302840_7303602_+|crotonase/enoyl-CoA-hydratase-family-protein
MSAVRVERSGPVWTVLLNRPGVRNAVDGPTAHTLAEVFREFDADPGAAVAVLHGEGGVFCAGADLGAIGTDLGNDPRSTTGPMGPTRLRLSKPVIAAVSGHAVAGGLELALWCDLRVADGSAVFGVFSRRWGIPLVDGGTVRLPRLIGASRAMDLVLTGRAVRAEEALAIGLVNRVAPTGTALQAARELAAQLAAFPQTCLRHDRLSLLEQEELAEEAALENELAHGLVSLQDAGPGLRRFAEGWGRHGRFPE
>NC_013093.1|WP_015804917.1|7303969_7305121_-|acyl-CoA-dehydrogenase-family-protein
MLDFRLDEEHEALRATVQRFAREEVAPVIGGFYEREEFPYDIVAKMGRMGLFGLPVPEEHGGMGGDYFALCLALEELGRVDSSVAITLEAGVSLAVMPLLRFGTDEQKARWLPALAAGEALGAFGLTEPGGGSDAGALRTTARLEDGQWVLNGTKAFITNSGTSITSLVTVAAVTGRKPDGRPEISTIIVPAGTPGLAVGSKYSKVGWNASDTHELSFQDCRVPEANLLGERGRGYAQFLRTLDEGRVAIAALGVGLAQGCVDECVRYAKEREAFGSPIGRYQAIQFKIADMEVRVHTARLAYYQAASKMLRGEPFKREAAIAKLVSSEAAMDNAREGAQVFGGYGFMNEYPVGRFYRDAKILEIGEGTSEVQRMLIARELGL
>NC_013093.1|WP_015804918.1|7305126_7307058_-|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MRVFDTVLVANRGEIAVRVVRALRRAGIRSVAVFSDADADALHVRLADAAVRIGPAAARDSYLDAGRIVAAALETGARAVHPGYGFLAENAGFARACAEAGLVFIGPPVRAIEVMGDKIQAKLTAAAAGVPVVPGRAEPGMGDDELVAAATEIGFPVLVKPSAGGGGKGMRLVREAAGLREAVESARREARASFGDDALLVERYVSDPRHIEIQVLADAHGTTVHLGERECSLQRRHQKVIEEAPSPLLDADAREAMGRSAVLAAESVGYVGAGTVEFIVDGTTGEHFFLEMNTRLQVEHPVTELVTGVDLVEQQLRVAAGEPLGFTSVELRGHAVEARVYAEDPARGFLPTGGRVLLLREPDEVRVDSALREGLVVGSDYDPMLAKVIAHGATRAEALRRLDAALSRTAVLGVTTNVPFLRALLAHPDVRAGRLDTGLVERSLDALVPGGTPDDVLVAAGCDRFLALGGADPWERLTGWRVGERAWARWVLDGAEVRVRGVAPDVEVRVGDADPVRVTARREGDELVVGARRYAVARDGDALWLGRDGGAWQVVETAPDVAAARGASSGGPVTSPMPGTVLLVRAAEGEAVVAGQALFVVEAMKMEHTVTAPVDGVLTGVRVRPGDQVALDEQLAAVLPPEE
>NC_013093.1|WP_015804919.1|7307057_7308659_-|acetyl-CoA-carboxylase-subunit-beta
MAAPVLRSTADRASDAFRRGAEAHTALVADLRARLATAATGGPERARARHVERGKLLPRDRVDALLDPGSPFLELSPLAANGLYDDEAPGAGVITGVGRIEGRECVVVANDATVKGGTYYPMTVKKHLRAQEVALHNHLPCAYLVDSGGAFLPRQDEVFPDREHFGRIFFNQATMSARGIPQIAAVLGSCTAGGAYVPAMSDEAVIVRGQGTIFLGGPPLVKAATGEVVTAEELGGGELHSRVSGVTDHLAEDDAHALAIVRSIVGTLGPRAPRPWEVAPTEEPAHDPADLYGVVPVDSRTPYDVREVIARVVDGSRFQEFKREYGQTLVTGFARIHGHPVGVVANNGVLFGESALKGAHFIQLCDQRGVPLVFLQNISGFMVGREYEAGGIAKHGAKMVTAVACARVPKFTVVIGGSFGAGNYSMCGRAYSPRFLWMWPNARISVMGGEQAASVLATVRRDQRPDWSAQDEEAFKAPIRAQYEDQGNPYYSTARLWDDGVIDPLDTRAVLGLALSAAANAPLDPVGYGVFRM

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Crispr_ID: NC_013093_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_12

7429938-7430045

Orphan

Consensus_repeat	Method
ACCGCGCCGTCGCCGATCACCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_12

>merge|NC_013093|12|7429938-7430045|CRISPRCasFinder
ACCGCGCCGTCGCCGATCACCGCGTCGGCCACGACCGCGCCCGCCTGCACGAGCGCGCCCGCGCCGACGACGCTCCGCTCCACGACCGCGCCCTCGCCGATCACCGCG

>NC_013093|12|11|7429938-7430045|CRISPRCasFinder
ACCGCGCCGTCGCCGATCACCGCG	TCGGCCACGACCGCGCCCGCCTGCACGAGCGCGCCCGCGCCGACGACGCTCCGCTCCACG
ACCGCGCCCTCGCCGATCACCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_177154679.1\|7424258_7424510_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NC_013093.1\|WP_015805028.1\|7436520_7436904_+\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_143761205.1\|7431361_7431736_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|366316
NC_013093.1\|WP_041837158.1\|7437008_7439501_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NC_013093.1\|WP_015805023.1\|7431075_7431465_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223062
NC_013093.1\|WP_015805025.1\|7433069_7434203_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_013093.1\|WP_015805018.1\|7425599_7426565_+\|2-phospho-L-lactate-transferase	unknown	unknown	gnl\|CDD\|237443
NC_013093.1\|WP_015805019.1\|7426557_7427943_+\|coenzyme-F420-0:L-glutamate-ligase	unknown	unknown	gnl\|CDD\|183957
NC_013093.1\|WP_015805012.1\|7417250_7418603_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|236557
NC_013093.1\|WP_015805031.1\|7440993_7441884_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NC_013093.1\|WP_015805014.1\|7419186_7419639_+\|metallopeptidase-family-protein	unknown	unknown	gnl\|CDD\|240574
NC_013093.1\|WP_015805026.1\|7434376_7435441_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_013093.1\|WP_041837156.1\|7424824_7425574_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100079
NC_013093.1\|WP_015805027.1\|7435586_7436489_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133029
NC_013093.1\|WP_015805024.1\|7431663_7432521_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NC_013093.1\|WP_015805030.1\|7439493_7440588_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_013093.1\|WP_084799289.1\|7418681_7419041_-\|DUF3499-domain-containing-protein	unknown	unknown	gnl\|CDD\|378788
NC_013093.1\|WP_015805020.1\|7427945_7428491_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239646
NC_013093.1\|WP_041838551.1\|7428894_7429794_-\|3-methyladenine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223200
NC_013093.1\|WP_118947889.1\|7417031_7417226_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225391

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_177154679.1\|7424258_7424510_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.33726e-28
NC_013093.1\|WP_143761205.1\|7431361_7431736_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|366316	pfam00805, Pentapeptide, Pentapeptide repeats (8 copies). These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.	0.000384514
NC_013093.1\|WP_041837158.1\|7437008_7439501_+\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	4.61154e-54
NC_013093.1\|WP_015805023.1\|7431075_7431465_+\|hypothetical-protein	gnl\|CDD\|223062	PHA03373, PHA03373, tegument protein; Provisional.	0.00544893
NC_013093.1\|WP_015805025.1\|7433069_7434203_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	7.74942e-82
NC_013093.1\|WP_015805018.1\|7425599_7426565_+\|2-phospho-L-lactate-transferase	gnl\|CDD\|237443	PRK13606, PRK13606, LPPG:FO 2-phospho-L-lactate transferase; Provisional.	1.81948e-170
NC_013093.1\|WP_015805019.1\|7426557_7427943_+\|coenzyme-F420-0:L-glutamate-ligase	gnl\|CDD\|183957	PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; Provisional.	0
NC_013093.1\|WP_015805012.1\|7417250_7418603_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|236557	PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.	0
NC_013093.1\|WP_015805031.1\|7440993_7441884_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	2.46346e-112
NC_013093.1\|WP_015805014.1\|7419186_7419639_+\|metallopeptidase-family-protein	gnl\|CDD\|240574	cd12954, MMP_TTHA0227_like_1, Minimal MMP-like domain found in a group of hypothetical proteins from alphaproteobacteria and actinobacteria. The subfamily includes some uncharacterized bacterial proteins which show high sequence similarity with Thermus thermophilus hypothetical protein TTHA0227. However, they do not contain the conserved HExxH (x could be any amino acid) motif. They may not have any zinc metallo-peptidase activity.	8.21732e-29
NC_013093.1\|WP_015805026.1\|7434376_7435441_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	1.17408e-68
NC_013093.1\|WP_041837156.1\|7424824_7425574_+\|site-2-protease-family-protein	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	6.85386e-39
NC_013093.1\|WP_015805027.1\|7435586_7436489_+\|glycosyltransferase	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.06597e-35
NC_013093.1\|WP_015805024.1\|7431663_7432521_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	8.18034e-60
NC_013093.1\|WP_015805030.1\|7439493_7440588_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	2.11905e-74
NC_013093.1\|WP_084799289.1\|7418681_7419041_-\|DUF3499-domain-containing-protein	gnl\|CDD\|378788	pfam12005, DUF3499, Protein of unknown function (DUF3499). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.	4.52695e-59
NC_013093.1\|WP_015805020.1\|7427945_7428491_+\|NUDIX-hydrolase	gnl\|CDD\|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.74462e-38
NC_013093.1\|WP_041838551.1\|7428894_7429794_-\|3-methyladenine-DNA-glycosylase	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	4.98016e-21
NC_013093.1\|WP_118947889.1\|7417031_7417226_-\|hypothetical-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.22299e-09

>NC_013093.1|WP_041838551.1|7428894_7429794_-|3-methyladenine-DNA-glycosylase
MARSWSPPFPVDVGAVVAPVRRGPGDPSFHREACGAVWLAAGTPCGAGTLRLAVSGGAVDALAWGSGAEWLLDGLPALLGAEDDDSGFVAHHPLVAESRRRRPGVRLCSTGRVWDALLPAVLEQKVTGTEAQRSYRQLCVRFGEVAPGPTPMPLHVPVGPRVVMRLADWEWHAAGVDGARRRTLVAAAQVAHRLEAAAGIKGVLGRELLRKVPGIGVWTAAEVAQRAWGDADAVSFGDFHLAKTVGHALTGGAVDDDGMAGLLAPYSPQRHRAVVFLLLSGVRAPRRGVRFSPRDYRRV
>NC_013093.1|WP_015805020.1|7427945_7428491_+|NUDIX-hydrolase
MDGLRASALAVLGDWKPGTAEQEALRQAYLGFLLARPDACARACEPGHLTASAVVLDASGERVLLTLHPRVGRWLQLGGHCEETDATLPDAAMREATEESGIHGLRLDPVPVHLDVHPITCSLGKPTRHFDVRFVVRAPEGAVPVISAESKDLRWWPLDALPEDTEDLRPLIAATRTRTAT
>NC_013093.1|WP_015805019.1|7426557_7427943_+|coenzyme-F420-0:L-glutamate-ligase
MTERGAAGAAAEPSAAEPPGADHAASGGVTILPVPGLPEFRPGDDLAGALATAAPWLADGDVVVVTSKVVSKVEGRLVRVPADPEERDAVRRHWVRAEAVSVIARRNRTLITENKLGIIQAASGVDASNVAGDEIALLPVDPDASAAALRARLAELLGVEVAVVVTDTMGRAWRVGQTDAAIGAAGLAVLHRYAGSVDRQGNSLVVTEVAVADEIAAAADLVKGKLGAVPVAVVRGLPTSDDGSKARDLARPVEDDLFRMGTAEAIAKGRAEALLVRRSVRAFTAEPVDRDLLRRAVGAALTAPAPHHTRPVRFVHVRERRTALLEAMRERWREDLRADGLSEEEVARRTARGDFLRDAPEIVLPFLVRSGAHAYPDERRAEAERTMFTIAGGAAVQGLLVALAAEGVGSCWVSSTIFCPDVVRAALDLPSSWEPLGAVAVGHPVEPLEARPLVEEGFVEL
>NC_013093.1|WP_015805018.1|7425599_7426565_+|2-phospho-L-lactate-transferase
MKVVVVVGGVGGARFLVGLKSLLAGSEHEITAVVNTGDDVWMHGLRITPDLDTCMYTLGGGIDAERGWGRAGESWVVKEELAAYGADPEWFGLGDRDIATHLVRTRMLNAGYPLSAVVEALCHRWQPGVRLLPMSDDRVETHVVVEDDGGRRAIHFQEWWVKHRAKLPALSFASVGAEKARPAPGVLDAIAEADAVVLAPSNPVVSVGTVLAVPGIRDALRKTSAGVVGLSPIIGGKPLRGMADACLSAIGVETSAEAVGRLYGSRRMSEGGVLDAWLVHSGDRCDVPGVAVRAVPLLMSSPEATAEMARAALDLAGADVD
>NC_013093.1|WP_041837156.1|7424824_7425574_+|site-2-protease-family-protein
MKSSAVRPSPLFLGLLAATVAGAVLTVFDSEIAVTAGTVLLVLGGWAVSLCLHEFGHAMVAYKGGDFEVRDKGYLTLDIRRYTDPVLSLVLPLLLLAFGGIPLPGGAVWINHYALRSRRVESWVSLAGPLSNLVLGLLLALSVVLFGPPLPLAAALSYLALLQVLAFTLNILPIPGLDGWGAIEPWLPPNVRAFGAKARPWAPLALFAVLIGLPALARPFFDLAYWVFGLVGGDAVLAYFGQSTFLFWR
>NC_013093.1|WP_177154679.1|7424258_7424510_-|WhiB-family-transcriptional-regulator
MVIGGSFDPADEQDWQERALCAQTDPEAFFPEKGGSTREAKRICLGCEVRSECLEYALAHDERFGIWGGLSERERRKLKKRAV
>NC_013093.1|WP_015805014.1|7419186_7419639_+|metallopeptidase-family-protein
MARGSRRQGPPRRRRRDRHGRGLRGPLYPATMPAARSRAERFDAVVLEALEPIEARWRTELTQLDVAVDDVPDVAPSTSGEDDDVVEDGNVPLARLMQPGQDRRARIVLYRRPLEARAKDGADLADLVHDVLVEQVANYLGLDPDVIDGE
>NC_013093.1|WP_084799289.1|7418681_7419041_-|DUF3499-domain-containing-protein
MRSVRRCSRTGCANPAVATLTYAYADSTAVVGPLATSSEPHSYDLCEEHALRLTAPRGWEVVRYQGEFAPPEPTVDDLTALAEAVREAGRVDRSPQPPEVPLGTIRRGHLRVLPDPRED
>NC_013093.1|WP_015805012.1|7417250_7418603_-|phosphomannomutase/phosphoglucomutase
MRDLSGIVKAYDIRGVVGEQLDVDVVRDFGAAFARLVGGPAIVIGHDMRDSSPGLAAAFAEGVTKQGVDVISIGLASTDMLYFASGKLDLPGAMFTASHNPAKYNGIKLCRAGAAPVGQDTGLTQIREDAEQGVADAEGVAPGTLSERDMLTEYAAYLRELVDLRTIRPLKVVVDAGNGMGGHTVPVVFDGLPIDVVPMYFELDGNFPNHEANPLDPKNIVDLQAKVREVGADAGLAFDGDADRCFVVDERGEPVSPSAITALVASRELAKDPGGTIIHNLITSRAVPEIVRENGGTPVRTRVGHSFIKQEMATTGAIFGGEHSAHYYFRDFWRADTGMLAAMHVLAALGEQDGALSALTADYERYAASGEINSTVADQAGRLAAIKAEFGAREGVELDELDGLTVSLPDGSWFNLRASNTEPLLRLNVEAADAASVAALSDEVLAIVRA
>NC_013093.1|WP_118947889.1|7417031_7417226_-|hypothetical-protein
MVQLDPRLLEVLACPCPEHAPLRQGTGPDPALEYLTCTACGRTYRVEDGIPVLLLGEAVEPAAG
>NC_013093.1|WP_015805023.1|7431075_7431465_+|hypothetical-protein
MDPRARADAVLARARARGGVHIVTPNNMTSPMDSSSTQQIPRSVVEAAEPKGPDPDSTMILTTRIANGLQDVPPPPPAVKMPPPEPEERVAPGPVPTVQQVASRPSLSQRLSGGQGQQGGLAGRLNGEG
>NC_013093.1|WP_143761205.1|7431361_7431736_-|pentapeptide-repeat-containing-protein
MGPHAPGGPPGPGPAPQAPHPQGLTAHRPQAHRPQAHLSRAHLSRAHLSQAHLSQAHLSQAHRPAKTRPAAPVTTVTCGRASGCSGRHPTLTPRRSTARPTRPAAPAHRTTAATATACWPPAAR
>NC_013093.1|WP_015805024.1|7431663_7432521_-|glycosyltransferase-family-2-protein
MTRYGDDLAVVTVTYSPGDTLDRFLDTLAGATTRPVRVVLADNGSTDGVPERAAVEHDDVEFVPTGGNLGYGGGANRGVAALDDSIGWIVIANPDLEWAAGSLDRLLDATTRWPRGGAFGPLVREPDGEVYPSARLLPSLGRGIGHALFAKVWPSNPWTREYRQERTGITERTAGWLSGSCLLLRREAFDSVDGFDARYFMYFEDVDLGDRISKAGWLNVYVPTAEVVHIGGASTKKASGRMLAAHHSSAYRYLSDRHQGLAWAPMLLAVRLGLGLRLKLLTRRA
>NC_013093.1|WP_015805025.1|7433069_7434203_-|glycosyltransferase-family-4-protein
MLIDATAVPADRGGVGRYVDSLVTALDADGAGVSVVCQPRDASHYRSLAPTSRVIAAAEAVATRTARLTWEQASLPRLVARLGVDVVHSPHYTLPLASRAASVVTLHDATFFTDPALHSSVKARFFRAWTRASLRRASLCVVPSHATADELARVAGADRTALHIAQHGVDTERFHPPTPQQVASVRASLGLGATPYVAFLGALEPRKNVPALIRGFARACQGRADPPALVLAGQPGWDGQVERALDSVPHRIRVIRAGYLPFDDLAGFLGGAELVAYPSLGEGFGLPVLEAMACGAAVLTTRRLSLPEVGGDAVAYCGVGAGDIAAALTALLDDPSRRHALSTAALVRAKDFSWETSAARHRLAYARAAHAHQATKR
>NC_013093.1|WP_015805026.1|7434376_7435441_-|glycosyltransferase-family-4-protein
MPNLVVLAEQLLAPVPGGTGRYTRELTAALAATAPPGWTVTTAVSRHPDPSAAAVPGVGAPRVLPIPRRALIAAWERGVPYWPGGDAVHAPTPLAPPRGRVVVTVHDTVPWTHPETLTPRGAAWHRRVIARAAARPTPLVVPTQAVADDLKTRVPCTAPPIAIPHGVTPLGESSPLPDLPDRYVLAIGTIEPRKGLETLVAATAQLDVPLLVVGQRGWGEVDLTAPHVRLLGKLPDPQLAHVLRNATALAVPSLAEGFGLPLVEAMSEGVPVVHSDAPALLEVAGGAGLVAERGDPRSLEAALRSLLTDHPLAARLAAAGRRRAEDFTWERAARAVWELHLAQAATASAERGAR
>NC_013093.1|WP_015805027.1|7435586_7436489_+|glycosyltransferase
MVVVTWRGREHVTECLDALSAQRRAHRLLVVDNASDDGTAGLLAAHPSRPEVVRLPRNTGYAGALAAVLPRVGTEFVAWLNDDAAPEPTWLAALEDELRRDRGAAAATSSMLLPDGSTQSVGVRITTDGHGADLVLAGRDVFGFCGGAALVRTAELVGAGGVPGSFFCYYEDTDTSWRLRLSGHRIVSVGPARVRHRHGASSEPGSPLFHRWNERNRLLMLLRCAPAGVALRELARFAAITALLPVRGGRPEGANFRVGLRLRVIGEVLLRLPSALVQRGAIGRRAKVSRAVVWREWAGR
>NC_013093.1|WP_015805028.1|7436520_7436904_+|hypothetical-protein
MTEYVEVRTEDGDLVPFEIDEEHDGPVRVGRRWDRTRELAEDTLEGGIELARSVAGTVAQRIGSLRSPAPDRVAVEIGLKVGASGLFAIARSTAEAHVKITVEWQRESLATVEAERDEDEEEPGDGD
>NC_013093.1|WP_041837158.1|7437008_7439501_+|glycosyltransferase
MERGSLPVVTVVVVNYRGAEDTTTCLRALFTDVDYPPDLLQVVCVDNASGDGSAELIRTSVPRAEVVEAPENLGFAGGCNLGAKRAKGSVLAFLNNDARPDAGWLREAVRVLREDPAVGAVASKVLDWDGKVVDFVDAGLTWFGMGYKRHAGEVDDGSHDAPRDVLFATGSAMVVRTDLFARLRGFDERFFMFYEDVDLGWRLNLRGWRVRYEPKSLTFHKHHASMKSVDTSRELFLLERNALAALYKNLSDDVLAKVLPAALALVVRRATARGDIDPTQLEITRRPADPADDAAPVPIARQALAGFLAIDQFVELLPSLAESRKAEQAARRRTDADLLPLMRKAMEPAYPLPRYLAAHEVLVDVFGLEGVFGRPRRVLVLTGDAISPKMAGPAIRAWNMADVLVAEHDVRLVTVNPLCAPPDAPFPVLRARQKELGEHVDWADVVVLQGHALEYLPQVKERSSTKVVVCDMYDPMHLELLEQGKDGTDEQRALDLVGVTRVLNTQLARGDFFLCASERQRHFWLGHLAALGRLTPSLYDTDPTVRSLLAVAPFGLSAKPPTRTGPGLRDVLGIGADDKVVLWAGGVYSWFDPLTLVSAVDELRERRPDVRLVFLGMKHPNPEVPDMDVAGQTRALSGRLGLTNEHVFFNESWVAYQDRQNWLLDADCGVTTHYEHVETTFAFRTRVLDYLWAGLPIVTTDGDSFADLVEREGLGVVVPSEDPVALAAALEKAVYDEEFAAACAERIAVVRERFTWEVALAPLVEFCRNPRPSADRLPGSSPMVRNKPLGTREKVERDIKLVREYLDAGGPSELAKRATGRVLKKLRGRG
>NC_013093.1|WP_015805030.1|7439493_7440588_+|glycosyltransferase-family-4-protein
MARRPLTVLLDGTPLLGQRTGIGRYTAALAEELASMVDEVDVRAVAFTLRGWRALRTVLPHDVVARGLPVSARLLRQFWLRAPFPPVEVLAGLADVMHATNFVLPPSVRAGGVVTIHDLAMLDHPGDLPPSDARLPELVRQSASRAAVVCTPTRAVADQVVERLGVPEDRVVVTPLGVDPAWFAARPPSDPVRARLRLPLEYLLFVGAGGPRKGLDRLIAAHAARPELPPLVLAGPGESGVDGRVVRTGYLTEIDLRRVVAGASVLVLPSRDEGFGLPVLEALACNVPVVCSDVPALREVAGGHAVHVPVGDVEALGQALVETVETPPSPAAQAARRAHASEFTWRRTAELTVKAYEKAARRRR
>NC_013093.1|WP_015805031.1|7440993_7441884_-|dTDP-4-dehydrorhamnose-reductase
MAATALLVPGGRGQLGQDLLATGGRVRALSSAELDITDADAVADRVSEFAAWARAEGLAPVVVNAAAYTAVDDAETDEDRALAVNALGPELLALACREHDVPLLHVSTDYVFPGDATAPYEPDDVTGPRSAYGRTKLAGERRALAAWDRTWVVRTAWVYGAGGPNFVKTMARLAGQRESLSVVDDQRGSPTWSADLAAGLVELAAATTGPAAPAQRVLHATGGGETTWFGLARAVFEELGLDPERVRPCGTEDFPRPAPRPAYSVLSPKAWESAGLTPLRPWREALTAAVRDGVAG

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Crispr_ID: NC_013093_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013093_13

7680691-7680800

Orphan

Consensus_repeat	Method
CGCCCTCACCCGATCGCCGGGGTGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013093_13

>merge|NC_013093|13|7680691-7680800|CRISPRCasFinder
CGCCCTCACCCGATCGCCGGGGTGGGTAGCCCGAGGCCCAGCCGCCCGCACCCCGTCATGGGGTAGGTCGCCCGAGACCCGGTCGCCCTCACCCGATTGCCGGGGTGGGT

>NC_013093|13|12|7680691-7680800|CRISPRCasFinder
CGCCCTCACCCGATCGCCGGGGTGGGT	AGCCCGAGGCCCAGCCGCCCGCACCCCGTCATGGGGTAGGTCGCCCGAGACCCGGT
CGCCCTCACCCGATTGCCGGGGTGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013093.1\|WP_015805212.1\|7669001_7670561_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_013093.1\|WP_015805214.1\|7671411_7672857_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143465
NC_013093.1\|WP_118947966.1\|7683991_7685002_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133379
NC_013093.1\|WP_085945057.1\|7670669_7671377_+\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NC_013093.1\|WP_015805217.1\|7675513_7676647_-\|GuaB3-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl\|CDD\|236322
NC_013093.1\|WP_015805231.1\|7690511_7691210_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NC_013093.1\|WP_015805227.1\|7687366_7687660_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_013093.1\|WP_015805220.1\|7678849_7679770_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379877
NC_013093.1\|WP_015805218.1\|7676678_7678190_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NC_013093.1\|WP_041838583.1\|7690056_7690500_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NC_013093.1\|WP_015805229.1\|7689011_7690064_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NC_013093.1\|WP_015805223.1\|7682164_7683715_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NC_013093.1\|WP_015805216.1\|7675149_7675356_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015805226.1\|7685656_7687282_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|237230
NC_013093.1\|WP_041838582.1\|7685187_7685484_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NC_013093.1\|WP_015805222.1\|7681487_7682084_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_013093.1\|WP_015805221.1\|7679770_7680343_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236607
NC_013093.1\|WP_041837178.1\|7688021_7688819_-\|hypothetical-protein	unknown	unknown	unknown
NC_013093.1\|WP_015805215.1\|7673297_7674986_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_013093.1\|WP_015805219.1\|7678313_7678709_+\|DUF5319-domain-containing-protein	unknown	unknown	gnl\|CDD\|379954

Protein	Function_ID	Function_description	E-value
NC_013093.1\|WP_015805212.1\|7669001_7670561_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_013093.1\|WP_015805214.1\|7671411_7672857_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143465	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.	0
NC_013093.1\|WP_118947966.1\|7683991_7685002_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133379	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.	2.66535e-17
NC_013093.1\|WP_085945057.1\|7670669_7671377_+\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	1.29597e-13
NC_013093.1\|WP_015805217.1\|7675513_7676647_-\|GuaB3-family-IMP-dehydrogenase-related-protein	gnl\|CDD\|236322	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein.	0
NC_013093.1\|WP_015805231.1\|7690511_7691210_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	9.41104e-50
NC_013093.1\|WP_015805227.1\|7687366_7687660_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	7.21255e-49
NC_013093.1\|WP_015805220.1\|7678849_7679770_-\|hypothetical-protein	gnl\|CDD\|379877	pfam16751, RsdA_SigD_bd, Anti-sigma-D factor RsdA to sigma factor binding region. RsdA_SigD_bd is a domain at the N-terminus of anti-sigma-D factor RsdA proteins. It binds to the -35 promoter binding domain of sigma-D. The complex formed regulates the transcriptional expression of the bacterium.	6.64277e-08
NC_013093.1\|WP_015805218.1\|7676678_7678190_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NC_013093.1\|WP_041838583.1\|7690056_7690500_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	5.47586e-38
NC_013093.1\|WP_015805229.1\|7689011_7690064_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	7.01729e-177
NC_013093.1\|WP_015805223.1\|7682164_7683715_-\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	7.40629e-09
NC_013093.1\|WP_015805226.1\|7685656_7687282_-\|chaperonin-GroEL	gnl\|CDD\|237230	PRK12849, groEL, chaperonin GroEL; Reviewed.	0
NC_013093.1\|WP_041838582.1\|7685187_7685484_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.65806e-25
NC_013093.1\|WP_015805222.1\|7681487_7682084_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.27962e-46
NC_013093.1\|WP_015805221.1\|7679770_7680343_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236607	PRK09648, PRK09648, RNA polymerase sigma factor ShbA.	9.56748e-95
NC_013093.1\|WP_015805215.1\|7673297_7674986_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	5.368e-58
NC_013093.1\|WP_015805219.1\|7678313_7678709_+\|DUF5319-domain-containing-protein	gnl\|CDD\|379954	pfam17252, DUF5319, Family of unknown function (DUF5319). This is a family of unknown function mostly found in Actinobacteria.	2.27133e-59

>NC_013093.1|WP_015805221.1|7679770_7680343_-|sigma-70-family-RNA-polymerase-sigma-factor
MTNLGDGLDAEVGAAVDGDRHAIERLLASIRPLVVRYCRARVGRQERSFASADDVAQEVCLAVLTALPSYRDQGRPFLAFVYGIAAHKVADAHRSAARNRSEPVPEVPDAPETEAGPEQRAMQGELSGRMAQLLKILPEKQREILLLRVVVGLSAEETATAVGSTPGAVRVAQHRALARLRKALAAEEVV
>NC_013093.1|WP_015805220.1|7678849_7679770_-|hypothetical-protein
MADQHEKGNGEVVRGQDERTPLTPDDPVVEPGDDLAGIRADDALLDALGGRDGDRPDSLVDDELNALLMAWRDEVDSSPVGELVDTDTAVATIAAARPSPPSRHRFLIPLASAAAIVAIAFTGVSLVARDALPGDSLWGLTRVLYSDHAKSVEAAVTVKSDLDTARAALRLGNLVDARAALANAGAHLPSILASDGKEELVQTHSSLMDRLTSTGPAPSSSSAVVPPNPGTTAPAPTSTSDPLPTTQPVTSSTPSPPPSSSTTAEPPSPSGETQPAPPPASDPNGGNSTSSERNGEQSPAKEQATP
>NC_013093.1|WP_015805219.1|7678313_7678709_+|DUF5319-domain-containing-protein
MVVPHDALPPDPFAGDPEDPARSLGDPAEEHDHPPMDDAERAELVGDLSDLAVYQALLEPKGVRGIVVDCGECDEPHYHDWALLRSSLEQLLADGRMRPHEPAYDPDPADYVSWEYCRGYADGATASESAR
>NC_013093.1|WP_015805218.1|7676678_7678190_-|IMP-dehydrogenase
MTSELNADGVPSKFAMLGLTFDDVLLLPAQSEIVPSGVDTSTRLSRNIVLRVPLASAAMDTVTEGRMAIAMARQGGIGVLHRNLSVEEQARQVETVKRSEAGMVSDPVTCSPGDTIKHVDDLCARYRISGVPVTDEAGKLVGIITNRDIRFEVDYSRKVAEVMTKGPLITAQVGVSAEAALGLLRRHKIEKLPIVDGDNKLRGLITVKDFVKTEQYPNASKDPDGRLLCAAAVGVGEDSFTRAMALADAGVDAIMVDTAHGHQRNVLEMVARIKKEVGEAVDIVGGNVATRAGAQALVDAGADGVKVGVGPGSICTTRVVAGVGVPQITAIYEAALACRPAGVPVIGDGGIQYSGDIAKAIAAGASAVMLGSLLAGTAESPGELVLVNGKQFKTYRGMGSLAALRGRGEGKSYSKDRYFQDDVLSEDKLVPEGIEGRTPFRGPLSQVVHQLAGGLRAAMGYTGSQSIPQLQDAQLVRITAAGLKESHPHDITMTVEAPNYTTR
>NC_013093.1|WP_015805217.1|7675513_7676647_-|GuaB3-family-IMP-dehydrogenase-related-protein
MRDLVEIGMGRTARRAYELDDIEIIPSRRTRSSKDVSTAWQIDAYRFEIPLITHPTDAIVSPGTAVAVGELGGLGVLNAEGLWARHADVDEALFRLVQSVEDTDDPAAPVKVLQELHAAPVRMDLVAQAIKQVRDSGVTVAVRVSPQHAAEFTPDLLAAGVEILVVQGTIISAEHVSRDGEPLNLKSFIADLDIPVIAGGVGDYRTAMHLMRTGAAGVIVGYGYTPGVTTSDSVLGIGVPMATAIADAAAARRDYLDETGGRYVHVIADGGVLTSGDVAKSIACGADAVMLGEPLAGAAEAPGQGLYWTAASAHPSVPRSHVSTGVDQVVDLRSLLFGPSVDPRGVTNLFGSLRRAMAKTGYSDLKEFQKVGLTIRG
>NC_013093.1|WP_015805216.1|7675149_7675356_-|hypothetical-protein
MIDDLFSGTADDQRESEPARRPPFARRRHVLVVLAAVLALVVLLVVVGSFMVGDLSGYSATTLRFWTD
>NC_013093.1|WP_015805215.1|7673297_7674986_-|GMC-family-oxidoreductase
MAEPGEGVDHDVVVVGSGFGGSVAALRLTEKGYRVAVVEAGRRFSDDEFAETSWDVRRYLWAPALGCYGIQRVHVLRDVVVLAGAGVGGGSLVYANTLYRPPSAFFLDRQWAHITDWESELAPHYDQASRVLGVVANPDRTPSDVVLERVAERMGVRDTYRPTPVGVHFGRPGEVAADPYFGGVGPSRAGCTRCGACMTGCRVGAKNTLVKNYLHLAELAGARVLPMSTATEVRPRGDGTWAVRIRRTGGPRSAERVLTAGQVVLAAGAWGTQRLLHRMRDDGVLPGLSPRLGELTRTNSEAITGAGRFRVDPGRDFSAGVAITSSMHPDADTHVEAVRFGRGSNLMGLLQTLATDGGSATPRFAQFLAAVARDPVRAVRLLSVRRWSERTVILLVMQSLDNSLTTFGKRGVFGRWRLGSGQGHGAPNPSYIAAGARAGELAAEEIGGVAGGAIGELFDVPMTAHFLGGCAIGEDWGSGVVDPYLRVHGYPGLSVVDGAAVSANLGVNPSLTIAAQAERAFSLWPNAGEADTRPAQGEGYRRVRVVRPRAPVVPEGAVGALR
>NC_013093.1|WP_015805214.1|7671411_7672857_+|aldehyde-dehydrogenase-family-protein
MEAFTPEPRPCWIAGRPEQGAETLAVLHPFDGTEVATVAVPGPEQVERAVAAAAAVAKDFRRTPAHVRAEALLRVSRGLAERAEEISETITAENGKPLKWAEVEVTRAVNVFRFAAEEARRFSGTLQRLDTDAGGEGRMALVRRAPRGPVLAVSPFNFPLNLVAHKVAPALAVGAPVVVKPASATPMSALLLGEVLAEAGFPEGAFSVLPVRGRDMKSLITDERLPVVSFTGSTSVGWGITEAAPRKHVVMELGSNSAAVILPDWPDLAGAAQRIATFGNYQAGQSCIAVQRVIVHRDAADEFVPLLVEAVRDLITGDPHDPAVEVGPLVDEDNAKRVESWIQEAVDAGADLLTGGERIGSSLEPTVVLNAPRDAKLWREEAFGPVLAVSVADSVEDAFTQVNDTDYGLQAGIFTRDVTVAFEAAAELEVGGLIVGDVPSYRADQMPYGGVKGSGTGREGVRSAMEDFTEERTVVLTGIAL
>NC_013093.1|WP_085945057.1|7670669_7671377_+|aminoglycoside-phosphotransferase-family-protein
MEEELLTGGGMTAVSRVGATVRRTAGPWTPTVHRLLERLAPLGASPVPRGFDERGREVLSYLEGEVAHPPVPEHLRGDDVLVAVARLVRRLHDASTGLVGLTGWRRPALEPAEVVCHGDLAPYNVVFRDGAPVGVIDFDWARPGPRAWDLAYTAYTLAPLSPEWGEPDEQWRRALLLFESYGIPATGLADLVLERLADMVRMIRELPEFGKQRAEGHDRLYLGHSGYVRRHFQDR
>NC_013093.1|WP_015805212.1|7669001_7670561_-|glutamine-hydrolyzing-GMP-synthase
MADSSNRPVLVVDFGAQYAQLIARRVREAQVYSEVVPHTTPVAELLAKDPAAIVLSGGPSSVYEPGAPQVDPALFDAGVPVFGICYGFQAMAGALGGTVEHTGTREYGRTELVLPPTSGVLHDDLPGTHPVWMSHGDCVTGAPEGFTVTASSDGAPVAAFENRERRFAGVQYHPEVGHSPHGQEVLRRFLHEIAGIRPQWTTASIVEEQVERIRAQVGEGRAICGLSGGVDSAVAAALVQRAIGDRLTCVFVDHGLLRAGERTQVERDFVASTGVNLVTVDARQRFLDALAGVTDPEEKRKIIGREFIRVFEQAERDLKAEGDYGFLVQGTLYPDVVESGGGAGAANIKSHHNVGGLPDDLQFELVEPLRALFKDEVRKVGAELGLPETIVQRQPFPGPGLGIRIIGEVTAERLDILRKADAIAREELTAAGLDRTIWQCPVVLLADVRSVGVQGDGRTYGHPIVLRPVSSEDAMTADWTRLPYEVLERVSTRITNEVAEVNRVVLDVTSKPPGTIEWE
>NC_013093.1|WP_015805222.1|7681487_7682084_-|response-regulator-transcription-factor
MTTVLICDDRRSVREGLTRVMSAVPGVSRIDCVAHGDELLARFSRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIAAAIAGGARGYLRWDASRPELVAALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVS
>NC_013093.1|WP_015805223.1|7682164_7683715_-|hypothetical-protein
MDPELRDAAFGARPDAEVWRALRGSPADAWLAAVVLGAQGHYAAASAALTALVHRPLPDLFTSLAASTLASHHRQLGDHRTARRFDSLALSTAPPPTPRPAAWPSDDALAEAPAQARASAEATPFAHDPDGIDPLGARADALLGLAADALGAGNLTEARRLHAAALQLPTQPENPPAPQATASRAATADRAATAGRAATADRAATADQAATADRAAGALTAGTRIATAAAKAATSPVPANRVPAGSAAAGSAPAGLAPTGLAPTGPIPAGPAPTGPALAGSTAISPTLTSRATAAPAVAVPSDAAHAAMPTEPSAAAVPAAAPAAAVPPAAPAVLPVEPPAAPAALSAEPPSAVHSWRTLVRHHWIAAEIALASGVPAEAVPHAEAALALAQARGGMRHILKSRLVLGTALVVWATPESVRRGTELLACDLNHTARLLLFSLSWPTALVLATNSPVRTTAERHDDLDRAANALSCVLLRSTPASRRAAEASPWMPTALLRSGEPPNADPETKFLTD
>NC_013093.1|WP_118947966.1|7683991_7685002_-|MerR-family-transcriptional-regulator
MNPPTRSTSPPVGDAREVVAGQGDPAQVVTLSVAAAARRLGVAPATLRTWDRRYGLGPSDHTTGRHRKYAPLDVARLELMQRALQRGATSAEAAKYALSTPVPAPDAQQAPLAIGELDAGRPSPAGVRGLRMPGAGRPARGLGRAALAMDSVAAQIILADAIDADGVVATWGEVVLPVLTAIAAKWEHSGAGVEVSHLLEECVAAAMTRATPLVADPRNHRPVLLACVPDERHSLPLRPLAAELARRGLGVMQLGASLPAAALASAIRRTAPSAVVLWAHLPRYADPGVVAALPRTRQQVRVFAGGPGWQRGVVPAPAERIDDLPVAVAAIERAVC
>NC_013093.1|WP_041838582.1|7685187_7685484_+|WhiB-family-transcriptional-regulator
MADTRRLPGPNADLWDWQMRGSCRGMDSAFFFHPDGERGPARARREARAKAVCLSCPVLEMCRRHALAVQEPYGIWGGLSESERDGIIKARKRRLTLT
>NC_013093.1|WP_015805226.1|7685656_7687282_-|chaperonin-GroEL
MPKQISFDEDARRALERGVNKLADTVKVTLGPRGRHVVLDKKFGGPTVTNDGVTIAREIELDDPFENLGAQLAKSVATKTNDIAGDGTTTATVLAQAMVRVGMRNVAAGANPTALGKGVQAAADAVVDALKAKATPVKGRDNIAQVGTVSSRDESIGSLLGEAIEKVGEDGVITVEESSTMATELHITEGVQFDKGYVSAHFATDLEAQETVFEDARILLHREKISALADLLPLLEKVAEAGKPLVIIAEDVEGEALSTLVVNALRKTLRVVAVKAPFFGDRRKAFLDDLAVVTGGQVIAAEVGLKLSEAGLDVLGAARRVVVSKDNTTIVDGAGAKADVAGRAEQLRREIEASDSDWDREKLQERLAKLSGGIAVIKVGAATETELKERKHRIEDAVAATKAAVEEGIVPGGGSALIHASKVLDGGLGLTGDEATGVALVREALGAPLFWIAANGGQEGAVAVNKVREADWGFGLNAATLTYGDLLEAGIIDPVKVTRSAVTNAASIARMVLTTESAIVEKKEEEPAGAGGHGHGHGHGH
>NC_013093.1|WP_015805227.1|7687366_7687660_-|co-chaperone-GroES
MSVNIKPLEDKIVVQASEAETTTASGLVIPDTAKEKPQEGKVLAVGPGRIDDKGNRIPVDVAVGDVVLYSKYGGTEVKYNGEEYLILSSRDVLAVIN
>NC_013093.1|WP_041837178.1|7688021_7688819_-|hypothetical-protein
MSASPHLQKYFAQRMRRSTTSLLLWAVLVSGIVLLGGSALGTLTAEHTEVTATAVAETTTSQTSGGRRSRTTEQVPALRVEFEHAGERREDVVVAGDRVVGDRFPVFVDGETGEARLAVPTVATATWVLVAVLTLVAALWAWISFGGVLRTARLRAFDPEAADERFALAVNRITPVKLGKSDFLHVTGVVGASTATAPEHGAGQVVRLSALAEVLPPADRIPARLDVRLVPDGGVVTTAFVRGPGDDGWWTASVVPEDNAQSRRV
>NC_013093.1|WP_015805229.1|7689011_7690064_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MTDRLILGIESSCDETGAGIVRLGADGGMELLADEVASSVEQHARFGGVVPEVASRAHLEAMVPSMRRALEKADVDLAQIDAIAVTAGPGLAGALLVGVSAAKAYAAALNKPLYGVNHLAGHVAADTLQHGPLPERCLALLVSGGHSQLLLVEGLASSITEIGSTVDDAAGEAYDKVARLLDLPYPGGPPIDRLAKQGNGCAIAFPRGLTGPRDAKYDFSFSGLKTSVARWVERREAAGEEVPLADVAASFQEAVADVLTAKAIRACRDLDVDTLVISGGVAANSRLSGLAAERCADAGITLRVPSPRLCTDNGAMIAAIGAHLVAAGAQPSGLSLSTNPGLPVEVVQVR
>NC_013093.1|WP_041838583.1|7690056_7690500_-|ribosomal-protein-S18-alanine-N-acetyltransferase
MVLSPLRHEDVPRCVEIEHRLFPGDDPWSENSFLSELDAGNLYLGAYADGELVGYAGLGLTDFESSVHTIAVETAWQGRGIGKALLRALLERADRDGLPVFLEVRTDNEGAIGLYLAHGFERLGLRRRYYQPSGADAYTMGRPANRD
>NC_013093.1|WP_015805231.1|7690511_7691210_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MLVLALDTATPAVTAGVVELEAGSPPRTLAQRVTVDAKAHGELLTPHLTEALADAGRSLADVDAIVVGAGPGPFTGLRVGLVTAAALGHALGRPVHPVATTDALAHDAVASGSAAGAPLLVATDARRREVYWAAYDADGRRTLGPDVERPADLAEKLPGLGLAQAVGEGAALYAEVLGLPVLAGHDHPSPAGLVAAAADALLSAAEPAPLTPLYLRRPDAVEPTGRKRVTRP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013093_5	5.2\|2530650\|18\|NC_013093\|CRISPRCasFinder	2530650-2530667	18	NC_013093.1	5836726-5836743	1	0.944
NC_013093_8	8.1\|6440094\|18\|NC_013093\|CRISPRCasFinder	6440094-6440111	18	NC_013093.1	5778341-5778358	1	0.944
NC_013093_8	8.1\|6440094\|18\|NC_013093\|CRISPRCasFinder	6440094-6440111	18	NC_013093.1	3440984-3441001	1	0.944
NC_013093_6	6.1\|6198129\|19\|NC_013093\|CRISPRCasFinder	6198129-6198147	19	NC_013093.1	3311843-3311861	2	0.895
NC_013093_6	6.2\|6198171\|19\|NC_013093\|CRISPRCasFinder	6198171-6198189	19	NC_013093.1	783154-783172	2	0.895

1. spacer 5.2|2530650|18|NC_013093|CRISPRCasFinder matches to position: 5836726-5836743, mismatch: 1, identity: 0.944

ccgtgccgccgtgcccgt	CRISPR spacer
ccgtgccgccgtacccgt	Protospacer
************.*****

2. spacer 8.1|6440094|18|NC_013093|CRISPRCasFinder matches to position: 5778341-5778358, mismatch: 1, identity: 0.944

gccgtccacgcacccggt	CRISPR spacer
gccgtccacgcgcccggt	Protospacer
***********.******

3. spacer 8.1|6440094|18|NC_013093|CRISPRCasFinder matches to position: 3440984-3441001, mismatch: 1, identity: 0.944

gccgtccacgcacccggt	CRISPR spacer
gccgtccacgcacacggt	Protospacer
************* ****

4. spacer 6.1|6198129|19|NC_013093|CRISPRCasFinder matches to position: 3311843-3311861, mismatch: 2, identity: 0.895

actgggggaaaccggcggt	CRISPR spacer
actgggggaagcgggcggt	Protospacer
**********.* ******

5. spacer 6.2|6198171|19|NC_013093|CRISPRCasFinder matches to position: 783154-783172, mismatch: 2, identity: 0.895

tccgcggaaacccggtctg	CRISPR spacer
tcagcggaaacccggactg	Protospacer
** ************ ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013093_2	2.2\|502605\|23\|NC_013093\|PILER-CR	502605-502627	23	NC_031074	Gordonia phage Bantam, complete genome	62248-62270	2	0.913
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	99160-99186	4	0.852
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	601363-601389	4	0.852
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	92306-92332	4	0.852
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	38401-38427	5	0.815
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	352242-352268	5	0.815
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	NZ_CP025549	Mycobacterium paragordonae strain 49061 plasmid unnamed3, complete sequence	9617-9643	5	0.815
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	516729-516755	5	0.815
NC_013093_4	4.1\|1868186\|28\|NC_013093\|CRISPRCasFinder	1868186-1868213	28	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	938435-938462	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	108972-108999	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1023779-1023806	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1023764-1023791	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	771627-771654	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1023786-1023813	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1275015-1275042	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1274959-1274986	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	952648-952675	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	763371-763398	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	246437-246464	5	0.821
NC_013093_11	11.1\|7290620\|28\|NC_013093\|CRISPRCasFinder	7290620-7290647	28	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1122812-1122839	5	0.821
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	188750-188776	6	0.778
NC_013093_2	2.1\|502553\|27\|NC_013093\|PILER-CR	502553-502579	27	JN698995	Mycobacterium phage Dori, complete genome	12034-12060	6	0.778
NC_013093_4	4.1\|1868186\|28\|NC_013093\|CRISPRCasFinder	1868186-1868213	28	NZ_CP022191	Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence	163312-163339	6	0.786
NC_013093_4	4.1\|1868186\|28\|NC_013093\|CRISPRCasFinder	1868186-1868213	28	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	987809-987836	6	0.786
NC_013093_4	4.1\|1868186\|28\|NC_013093\|CRISPRCasFinder	1868186-1868213	28	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	825320-825347	6	0.786
NC_013093_4	4.1\|1868186\|28\|NC_013093\|CRISPRCasFinder	1868186-1868213	28	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1029051-1029078	7	0.75
NC_013093_7	7.10\|6295822\|31\|NC_013093\|CRISPRCasFinder	6295822-6295852	31	NZ_CP010864	Marinovum algicola DG 898 plasmid pMaD9, complete sequence	80475-80505	7	0.774
NC_013093_7	7.10\|6295822\|31\|NC_013093\|CRISPRCasFinder	6295822-6295852	31	NZ_CP049030	Fluviibacterium aquatile strain SC52 plasmid pSC52_2, complete sequence	317283-317313	9	0.71
NC_013093_7	7.10\|6295822\|31\|NC_013093\|CRISPRCasFinder	6295822-6295852	31	NC_015741	Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence	58355-58385	9	0.71
NC_013093_7	7.10\|6295822\|31\|NC_013093\|CRISPRCasFinder	6295822-6295852	31	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	62115-62145	9	0.71

1. spacer 2.2|502605|23|NC_013093|PILER-CR matches to NC_031074 (Gordonia phage Bantam, complete genome) position: , mismatch: 2, identity: 0.913

ggacgggtcgagcacgaccgtgg	CRISPR spacer
ggactggtcgagcacgaccgtcg	Protospacer
**** **************** *

2. spacer 2.1|502553|27|NC_013093|PILER-CR matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 4, identity: 0.852

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
cgccgcgtgggtgcggtcgagcacgcg	Protospacer
*.***********.***********.

3. spacer 2.1|502553|27|NC_013093|PILER-CR matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 4, identity: 0.852

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
cgccgcgtgggtgcggtcgagcacgcg	Protospacer
*.***********.***********.

4. spacer 2.1|502553|27|NC_013093|PILER-CR matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.852

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
cgccgcgtgggtgcggtcgagcacgcg	Protospacer
*.***********.***********.

5. spacer 2.1|502553|27|NC_013093|PILER-CR matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
gaccgcgtgggcgtggtcgaccacggc	Protospacer
 **********.******** **** .

6. spacer 2.1|502553|27|NC_013093|PILER-CR matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 5, identity: 0.815

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
cttcgcgtgggtgaggtcgagcatgtc	Protospacer
* .********** *********.**.

7. spacer 2.1|502553|27|NC_013093|PILER-CR matches to NZ_CP025549 (Mycobacterium paragordonae strain 49061 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.815

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
cagatcgtgggtgtggtcgagcacctc	Protospacer
**   ******************* *.

8. spacer 2.1|502553|27|NC_013093|PILER-CR matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.815

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
cgccgcatgggtgcggtcgagcacgcg	Protospacer
*.****.******.***********.

9. spacer 4.1|1868186|28|NC_013093|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.821

attcggg----ggcacccccggcatcgggggc	CRISPR spacer
----gggatctggcaccctcggcatcgggggc	Protospacer
    ***    *******.*************

10. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
taccggggtgtaaccgccggtcttgccg	Protospacer
 ..********* ******** ******

11. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

12. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
tggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

13. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

14. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

15. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

16. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

17. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

18. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

19. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg-	CRISPR spacer
ggtcggggtggactcgccggtg-tacggt	Protospacer
********** **.******** *.* *

20. spacer 11.1|7290620|28|NC_013093|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ggtcggggtgtacccgccggtgttgccg	CRISPR spacer
cggccgggtgtcgccgccggtgttgccg	Protospacer
 * * ******  ***************

21. spacer 2.1|502553|27|NC_013093|PILER-CR matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.778

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
caccgcctgggtggggtcgagcagcca	Protospacer
****** ****** *********  .

22. spacer 2.1|502553|27|NC_013093|PILER-CR matches to JN698995 (Mycobacterium phage Dori, complete genome) position: , mismatch: 6, identity: 0.778

caccgcgtgggtgtggtcgagcacgtt	CRISPR spacer
caccgcgcgtgtgtggtcgagcagtcg	Protospacer
*******.* *************  .

23. spacer 4.1|1868186|28|NC_013093|CRISPRCasFinder matches to NZ_CP022191 (Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

attcgggggcacccccggcatcgggggc	CRISPR spacer
tttcgggggcacccccggcaccgccgag	Protospacer
 *******************.**  *.

24. spacer 4.1|1868186|28|NC_013093|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 6, identity: 0.786

attcgggggcacccccggcatcgggggc	CRISPR spacer
tggcgggggcacctccggcatcggttgc	Protospacer
   **********.**********  **

25. spacer 4.1|1868186|28|NC_013093|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 6, identity: 0.786

attcgggggcacccccggcatcgggggc	CRISPR spacer
tggcgggggcacctccggcatcggttgc	Protospacer
   **********.**********  **

26. spacer 4.1|1868186|28|NC_013093|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.75

attcgggggcacccccggcatcgggggc	CRISPR spacer
caccgggggcacccgcggcatcggacgg	Protospacer
  .*********** *********. *

27. spacer 7.10|6295822|31|NC_013093|CRISPRCasFinder matches to NZ_CP010864 (Marinovum algicola DG 898 plasmid pMaD9, complete sequence) position: , mismatch: 7, identity: 0.774

tgtgtaggtgagcgggccgttcactcacccc	CRISPR spacer
ggtataggtgatcgggccgttcaccacccgc	Protospacer
 **.******* ************.  ** *

28. spacer 7.10|6295822|31|NC_013093|CRISPRCasFinder matches to NZ_CP049030 (Fluviibacterium aquatile strain SC52 plasmid pSC52_2, complete sequence) position: , mismatch: 9, identity: 0.71

tgtgtaggtgagcgggccgttcactcacccc	CRISPR spacer
tgtgtaggtgatcgggccgttaacgatggat	Protospacer
*********** ********* **      .

29. spacer 7.10|6295822|31|NC_013093|CRISPRCasFinder matches to NC_015741 (Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence) position: , mismatch: 9, identity: 0.71

tgtgtaggtgagcgggccgttcactcacccc	CRISPR spacer
ggtataggtgatcgggccgttcacgacgcgt	Protospacer
 **.******* ************    * .

30. spacer 7.10|6295822|31|NC_013093|CRISPRCasFinder matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.71

tgtgtaggtgagcgggccgttcactcacccc	CRISPR spacer
ggtataggtgatcgggccgttcacgatcgag	Protospacer
 **.******* ************   *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage