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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012785 Kosmotoga olearia TBF 19.5.1, complete sequence 7 crisprs WYL,RT,DEDDh,cas3,cas6,csa3,cas2,cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,cmr1gr7,cas1,cas4,cas5,cas7,cas8b1,DinG,cas3HD 0 7 3 0

Results visualization

1. NC_012785
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012785_1 439134-439435 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012785_2 439675-442253 Orphan NA
38 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012785_3 530300-530724 Unclear NA
6 spacers
cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012785_4 719736-725328 TypeIII NA
85 spacers
cas6,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cmr1gr7,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012785_5 725373-725467 TypeIII NA
1 spacers
cas6,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cmr1gr7,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012785_6 749509-749589 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012785_7 1392688-1392842 Orphan NA
1 spacers
RT

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 NZ_CP015198 Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence 450-482 8 0.758
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 NZ_CP015198 Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence 4208-4240 8 0.758
NC_012785_4 4.80|724798|34|NC_012785|CRISPRCasFinder,CRT,PILER-CR 724798-724831 34 MH633486 Klebsiella phage NJS3, complete genome 40571-40604 8 0.765
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 205298-205330 9 0.727
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 NZ_CP022660 Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence 5915-5947 9 0.727
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 NZ_CP022660 Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence 277636-277668 9 0.727
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 NZ_CP045061 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence 5923-5955 9 0.727
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 NZ_CP045054 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence 5925-5957 9 0.727
NC_012785_4 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT 719964-719996 33 NZ_CP045058 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence 5925-5957 9 0.727
NC_012785_4 4.52|722971|35|NC_012785|CRISPRCasFinder,CRT,PILER-CR 722971-723005 35 MT661596 Proteus phage 10, complete genome 141522-141556 9 0.743
NC_012785_4 4.62|723626|33|NC_012785|CRISPRCasFinder,CRT,PILER-CR 723626-723658 33 EU744250 Mycobacterium virus Pukovnik, complete genome 44081-44113 9 0.727
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 KC252997 Halovirus PH1, complete genome 26204-26238 10 0.714
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 MF919502 Mycobacterium phage Demsculpinboyz, complete genome 8960-8994 10 0.714
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 AY129336 Mycobacteriophage Che9d, complete genome 8969-9003 10 0.714
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 NC_042030 Mycobacterium phage Yoshi, complete sequence 8960-8994 10 0.714
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 KJ567041 Mycobacterium phage Zapner, complete genome 9485-9519 10 0.714
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 NC_023698 Mycobacterium phage Avani, complete genome 8961-8995 10 0.714
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 NC_022069 Mycobacterium phage Jabbawokkie, complete genome 9484-9518 10 0.714
NC_012785_2 2.33|441858|35|NC_012785|CRISPRCasFinder,CRT 441858-441892 35 NC_025151 Leptospira interrogans serovar Lai str. 56601 plasmid Laicp, complete sequence 5083-5117 10 0.714
NC_012785_2 2.33|441858|35|NC_012785|CRISPRCasFinder,CRT 441858-441892 35 NZ_CP006726 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence 10129-10163 10 0.714
NC_012785_2 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT 441326-441360 35 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 1079672-1079706 11 0.686
NC_012785_2 2.33|441858|35|NC_012785|CRISPRCasFinder,CRT 441858-441892 35 MN047793 Xanthomonas phage Xoo-sp13, complete genome 161400-161434 11 0.686
NC_012785_4 4.75|724476|34|NC_012785|CRISPRCasFinder,CRT,PILER-CR 724476-724509 34 NZ_LN906635 Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608 64395-64428 12 0.647

1. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP015198 (Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence) position: , mismatch: 8, identity: 0.758

ttccacacagcctttttttatcatttttttctg	CRISPR spacer
ttctttttcgcctttttttattatttttctctg	Protospacer
***. . . ************.******.****

2. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP015198 (Streptococcus marmotae strain HTS5 plasmid unnamed 2, complete sequence) position: , mismatch: 8, identity: 0.758

ttccacacagcctttttttatcatttttttctg	CRISPR spacer
ttctttttcgcctttttttattatttttctctg	Protospacer
***. . . ************.******.****

3. spacer 4.80|724798|34|NC_012785|CRISPRCasFinder,CRT,PILER-CR matches to MH633486 (Klebsiella phage NJS3, complete genome) position: , mismatch: 8, identity: 0.765

agggcattgttgccctcatggaggcagcgaggta	CRISPR spacer
atcgcatggttgcgctcatggaggcagcgcaggc	Protospacer
*  **** ***** *************** .*  

4. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

ttccaca----cagcctttttttatcatttttttctg	CRISPR spacer
----aaaagacaagcatttttttattatttttttcta	Protospacer
    * *     *** *********.**********.

5. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 9, identity: 0.727

ttccacacagcctttttttatcatttttttctg	CRISPR spacer
aaactgactgccttttttcatcatttttttgtt	Protospacer
   *  ** *********.*********** * 

6. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 9, identity: 0.727

ttccacacagcctttttttatcatttttttctg	CRISPR spacer
aaactgactgccttttttcatcatttttttgtt	Protospacer
   *  ** *********.*********** * 

7. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 9, identity: 0.727

ttccacacagcctttttttatcatttttttctg	CRISPR spacer
aaactgactgccttttttcatcatttttttgtt	Protospacer
   *  ** *********.*********** * 

8. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 9, identity: 0.727

ttccacacagcctttttttatcatttttttctg	CRISPR spacer
aaactgactgccttttttcatcatttttttgtt	Protospacer
   *  ** *********.*********** * 

9. spacer 4.6|719964|33|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 9, identity: 0.727

ttccacacagcctttttttatcatttttttctg	CRISPR spacer
aaactgactgccttttttcatcatttttttgtt	Protospacer
   *  ** *********.*********** * 

10. spacer 4.52|722971|35|NC_012785|CRISPRCasFinder,CRT,PILER-CR matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 9, identity: 0.743

aaggcaatcaccccctttggttcgtttttactacc	CRISPR spacer
cttgtaatcaccccctttggttggtttgtaagaac	Protospacer
   *.***************** **** **  * *

11. spacer 4.62|723626|33|NC_012785|CRISPRCasFinder,CRT,PILER-CR matches to EU744250 (Mycobacterium virus Pukovnik, complete genome) position: , mismatch: 9, identity: 0.727

ttttgtttcttttctatctcgctcattctctcc	CRISPR spacer
aactggaacttctcgatctcgctcattctctct	Protospacer
  .**   ***.** *****************.

12. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to KC252997 (Halovirus PH1, complete genome) position: , mismatch: 10, identity: 0.714

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
atcggtgacgacggcgacctgctcggctggaaggc	Protospacer
   *.**************** *** **** *  .

13. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to MF919502 (Mycobacterium phage Demsculpinboyz, complete genome) position: , mismatch: 10, identity: 0.714

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
tggggtgacgtccgcgacctgatcgcctggctccc	Protospacer
...*.***** * *****************. .*.

14. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to AY129336 (Mycobacteriophage Che9d, complete genome) position: , mismatch: 10, identity: 0.714

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
tggggtgacgtccgcgacctgatcgcctggctccc	Protospacer
...*.***** * *****************. .*.

15. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to NC_042030 (Mycobacterium phage Yoshi, complete sequence) position: , mismatch: 10, identity: 0.714

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
tggggtgacgtccgcgacctgatcgcctggctccc	Protospacer
...*.***** * *****************. .*.

16. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to KJ567041 (Mycobacterium phage Zapner, complete genome) position: , mismatch: 10, identity: 0.714

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
tggggtgacgtccgcgacctgatcgcctggctccc	Protospacer
...*.***** * *****************. .*.

17. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to NC_023698 (Mycobacterium phage Avani, complete genome) position: , mismatch: 10, identity: 0.714

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
tggggtgacgtccgcgacctgatcgcctggctccc	Protospacer
...*.***** * *****************. .*.

18. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to NC_022069 (Mycobacterium phage Jabbawokkie, complete genome) position: , mismatch: 10, identity: 0.714

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
tggggtgacgtccgcgacctgatcgcctggctccc	Protospacer
...*.***** * *****************. .*.

19. spacer 2.33|441858|35|NC_012785|CRISPRCasFinder,CRT matches to NC_025151 (Leptospira interrogans serovar Lai str. 56601 plasmid Laicp, complete sequence) position: , mismatch: 10, identity: 0.714

cggaaccaaaagggaaattaagaaaaaattcgtgc	CRISPR spacer
caaaaacaaaagcgaaattaagaaaaaagatttaa	Protospacer
*..** ****** ***************  . *. 

20. spacer 2.33|441858|35|NC_012785|CRISPRCasFinder,CRT matches to NZ_CP006726 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence) position: , mismatch: 10, identity: 0.714

cggaaccaaaagggaaattaagaaaaaattcgtgc	CRISPR spacer
caaaaacaaaagcgaaattaagaaaaaagatttaa	Protospacer
*..** ****** ***************  . *. 

21. spacer 2.25|441326|35|NC_012785|CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 11, identity: 0.686

caagatgacgacggcgacctgatcgcctggtatct	CRISPR spacer
gccgacgacgacggcgacctgatcacctcggcgaa	Protospacer
   **.******************.*** *     

22. spacer 2.33|441858|35|NC_012785|CRISPRCasFinder,CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 11, identity: 0.686

cggaaccaaaagggaaattaagaaaaaattcgtgc	CRISPR spacer
tccacccaaaaaggtaattaagaaaaaattatcta	Protospacer
.  * ******.** ***************  .  

23. spacer 4.75|724476|34|NC_012785|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN906635 (Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608) position: , mismatch: 12, identity: 0.647

cattttagctcctgtttttatgatatgtggtgcc	CRISPR spacer
tattttagcacctatttttatgataaaataaaga	Protospacer
.******** ***.*********** .  . .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1110202 : 1118078 6 Lactococcus_phage(33.33%) transposase NA
DBSCAN-SWA_2 1316514 : 1364451 41 Pseudomonas_phage(33.33%) transposase NA
DBSCAN-SWA_3 1916062 : 1953956 30 Escherichia_phage(100.0%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage