CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012792	Variovorax paradoxus S110 chromosome 2, complete sequence	0 crisprs	csa3,Cas9_archaeal	0	0	1	0
NC_012791	Variovorax paradoxus S110 chromosome 1, complete sequence	0 crisprs	DEDDh,WYL,DinG,PrimPol,csa3,cas3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1019832 : 1033571

Agrobacterium_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015866306.1\|1019832_1021020_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	8.0e-39	30.8
WP_015866307.1\|1021025_1022726_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	5.6e-70	33.7
WP_015866308.1\|1022736_1023813_+	NUDIX domain-containing protein	A0A1B0V161	Roseobacter_phage	4.7e-54	37.2
WP_015866309.1\|1023809_1024715_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.4e-67	45.7
WP_015866310.1\|1024937_1026767_+	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA
WP_015866311.1\|1026844_1027519_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.7e-22	33.0
WP_015866312.1\|1027505_1028897_+	sensor histidine kinase	W8CYF6	Bacillus_phage	9.8e-20	25.6
WP_015866313.1\|1029049_1029745_+	TerC family protein	W8EBD0	Pseudomonas_phage	2.0e-29	41.0
WP_015866314.1\|1029758_1030193_+	universal stress protein	NA	NA	NA	NA
WP_015866315.1\|1030228_1030648_-	hypothetical protein	NA	NA	NA	NA
WP_015866316.1\|1030644_1031091_-	low affinity iron permease family protein	A0A1C9EHA1	Mycobacterium_phage	2.2e-05	36.4
WP_015866317.1\|1031287_1031776_+	DUF2231 domain-containing protein	NA	NA	NA	NA
WP_015866318.1\|1031798_1033571_-	ATP-dependent DNA helicase RecQ	Q9DSV4	Diadromus_pulchellus_ascovirus	4.8e-56	40.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_012791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

628447 : 636961

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012745736.1\|628447_629950_+	anthranilate synthase component I	S4VT78	Pandoravirus	1.2e-36	29.1
WP_012745737.1\|629946_630339_+	GxxExxY protein	A9YW17	Ostreococcus_tauri_virus	2.9e-06	31.0
WP_012745738.1\|630335_630920_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.9e-58	55.8
WP_012745739.1\|630928_631987_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_012745740.1\|632005_632665_+	LysE family translocator	NA	NA	NA	NA
WP_012745741.1\|632685_633711_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.7e-75	46.3
WP_012745742.1\|633744_634545_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	8.9e-58	50.2
WP_012745743.1\|634541_635261_+	uracil-DNA glycosylase	A0A0B5IW78	Pandoravirus	1.8e-49	47.8
WP_012745744.1\|635767_636961_+	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	2.6e-13	29.2

DBSCAN-SWA_2

943899 : 1001267

Streptococcus_phage(25.0%)

transposase,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012746009.1\|943899_944856_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012746010.1\|944898_945726_+	NYN domain-containing protein	NA	NA	NA	NA
WP_012746011.1\|945722_946463_+	DUF3025 domain-containing protein	NA	NA	NA	NA
WP_012746012.1\|946615_947488_+\|protease	protease HtpX	NA	NA	NA	NA
WP_012746013.1\|947568_948114_-	hypothetical protein	NA	NA	NA	NA
WP_012746014.1\|948110_948554_-	hypothetical protein	NA	NA	NA	NA
WP_012746015.1\|948699_949587_-	ProQ activator of osmoprotectant transporter prop	NA	NA	NA	NA
WP_012746016.1\|949643_950273_-	flavin reductase family protein	NA	NA	NA	NA
WP_012746017.1\|950284_951925_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012746018.1\|951997_952918_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	4.7e-79	52.9
WP_012746019.1\|953463_953943_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012746020.1\|953943_956022_+	FUSC family protein	NA	NA	NA	NA
WP_012746021.1\|956018_956225_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_012746022.1\|956235_957171_+	HlyD family secretion protein	NA	NA	NA	NA
WP_049826073.1\|957167_958658_+	TolC family protein	NA	NA	NA	NA
WP_012746024.1\|958660_959875_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_012746025.1\|959885_960434_-	hypothetical protein	NA	NA	NA	NA
WP_012746026.1\|960492_961206_-	RNA-binding protein S4	NA	NA	NA	NA
WP_012746027.1\|961202_962876_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_038106782.1\|963055_964039_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012746029.1\|964060_964981_-	EamA family transporter	NA	NA	NA	NA
WP_012746030.1\|966443_966728_+	hypothetical protein	NA	NA	NA	NA
WP_012746031.1\|966782_967526_+	hypothetical protein	NA	NA	NA	NA
WP_012746032.1\|967734_967965_+	hypothetical protein	NA	NA	NA	NA
WP_012746033.1\|968009_970376_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_012746034.1\|970398_971370_-	esterase	NA	NA	NA	NA
WP_012746035.1\|971761_972574_+	TSUP family transporter	NA	NA	NA	NA
WP_012746036.1\|972637_972997_+	hypothetical protein	NA	NA	NA	NA
WP_012746037.1\|973256_974198_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012746038.1\|974327_974618_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_012746039.1\|974887_976210_-	DUF3396 domain-containing protein	NA	NA	NA	NA
WP_012746040.1\|976488_977760_-	DUF3396 domain-containing protein	NA	NA	NA	NA
WP_012746041.1\|977772_978777_-	hypothetical protein	NA	NA	NA	NA
WP_012745835.1\|978903_979668_-	ATP-binding protein	A0A059VK34	Pseudomonas_phage	8.3e-05	27.0
WP_012746042.1\|979664_981278_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_012746043.1\|981363_981675_-	hypothetical protein	NA	NA	NA	NA
WP_041945632.1\|984875_986954_+	hypothetical protein	NA	NA	NA	NA
WP_012746046.1\|986916_987855_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041945442.1\|987997_988294_+	hypothetical protein	NA	NA	NA	NA
WP_012746048.1\|988311_988971_+	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
WP_012746049.1\|988978_989863_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_012746050.1\|989859_990558_+	DUF484 family protein	NA	NA	NA	NA
WP_012746051.1\|990587_991193_+	YdcF family protein	NA	NA	NA	NA
WP_012746052.1\|991176_992247_+	tyrosine recombinase XerC	A0A166YH27	Gordonia_phage	1.4e-13	31.0
WP_012746053.1\|992247_993468_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012746054.1\|993553_994603_+	GTP-binding protein	NA	NA	NA	NA
WP_012746055.1\|994729_996247_-	YdgA family protein	NA	NA	NA	NA
WP_012746056.1\|996964_997588_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_012746057.1\|997633_999316_+	STAS domain-containing protein	NA	NA	NA	NA
WP_012746058.1\|999390_999936_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_012746059.1\|999938_1001267_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	1.1e-41	28.5

DBSCAN-SWA_3

2590573 : 2634380

Pseudomonas_phage(11.54%)

terminase,portal,protease,capsid,tail,integrase,head

attL 2582675:2582691|attR 2606633:2606649

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2582675:2582691	attL	NA	NA	NA	NA
WP_012747535.1\|2590573_2591662_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012747536.1\|2591661_2591865_-	excisionase	NA	NA	NA	NA
WP_012747537.1\|2591861_2592296_-	HNH endonuclease	Q3HQV7	Burkholderia_phage	8.0e-37	56.5
WP_012747538.1\|2592292_2592556_-	hypothetical protein	NA	NA	NA	NA
WP_012747539.1\|2592552_2592711_-	hypothetical protein	NA	NA	NA	NA
WP_041945497.1\|2592712_2593504_-	hypothetical protein	A0A1P8VV89	Erythrobacter_phage	2.3e-26	30.9
WP_012747541.1\|2593500_2594034_-	hypothetical protein	NA	NA	NA	NA
WP_012747542.1\|2594030_2594873_-	hypothetical protein	NA	NA	NA	NA
WP_012747543.1\|2594862_2595261_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_012747544.1\|2595466_2595724_-	hypothetical protein	NA	NA	NA	NA
WP_012747545.1\|2595720_2596386_-	hypothetical protein	A0A0M3LP90	Mannheimia_phage	5.0e-30	37.8
WP_012747546.1\|2596378_2597194_-	hypothetical protein	E5DV80	Deep-sea_thermophilic_phage	2.6e-12	31.2
WP_012747547.1\|2597190_2598405_-	hypothetical protein	A0A2K8HZX9	Pseudomonas_phage	5.7e-16	35.5
WP_012747548.1\|2598413_2598557_-	hypothetical protein	NA	NA	NA	NA
WP_012747549.1\|2598553_2598904_-	hypothetical protein	A0A0X8WP99	Ralstonia_phage	2.9e-13	37.5
WP_150106773.1\|2598906_2599089_-	hypothetical protein	NA	NA	NA	NA
WP_012747550.1\|2599085_2599265_-	hypothetical protein	A0A0S0N042	Pseudomonas_phage	4.2e-08	56.9
WP_012747551.1\|2599261_2599489_-	hypothetical protein	NA	NA	NA	NA
WP_012747552.1\|2599485_2599665_-	hypothetical protein	NA	NA	NA	NA
WP_150106774.1\|2599661_2599946_-	hypothetical protein	NA	NA	NA	NA
WP_150106775.1\|2599942_2600131_-	hypothetical protein	NA	NA	NA	NA
WP_012747554.1\|2600151_2600385_-	hypothetical protein	NA	NA	NA	NA
WP_041945499.1\|2600381_2600585_-	hypothetical protein	NA	NA	NA	NA
WP_049826087.1\|2600849_2601239_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_167313211.1\|2601144_2601519_-	hypothetical protein	NA	NA	NA	NA
WP_012747557.1\|2601569_2602160_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012747558.1\|2602341_2602830_+	pilin	NA	NA	NA	NA
WP_012747559.1\|2602878_2603130_-	hypothetical protein	NA	NA	NA	NA
WP_041945500.1\|2603131_2603617_-	helix-turn-helix transcriptional regulator	Q6J1N3	Burkholderia_virus	4.3e-07	44.4
WP_012747561.1\|2603696_2603942_+	hypothetical protein	NA	NA	NA	NA
WP_012747562.1\|2604118_2604601_+	hypothetical protein	NA	NA	NA	NA
WP_012747563.1\|2604600_2605317_+	hypothetical protein	A0A1B0WM60	Flavobacterium_phage	8.0e-42	45.5
WP_012747564.1\|2605313_2605559_+	hypothetical protein	NA	NA	NA	NA
WP_012747565.1\|2605558_2605843_+	AsnC family transcriptional regulator	NA	NA	NA	NA
WP_012747566.1\|2605839_2606697_+	hypothetical protein	B5AX23	Iodobacteriophage	4.8e-17	42.3
2606633:2606649	attR	NA	NA	NA	NA
WP_012747567.1\|2606689_2607256_+	hypothetical protein	NA	NA	NA	NA
WP_012747568.1\|2607255_2607648_+	hypothetical protein	NA	NA	NA	NA
WP_012747569.1\|2607644_2608049_+	hypothetical protein	NA	NA	NA	NA
WP_012747570.1\|2608045_2608339_+	DUF4406 domain-containing protein	A0A0U4IBL4	Pseudomonas_phage	2.7e-20	47.4
WP_012747571.1\|2608335_2608530_+	hypothetical protein	NA	NA	NA	NA
WP_012747573.1\|2608867_2609311_+	DUF1367 family protein	NA	NA	NA	NA
WP_150106776.1\|2609301_2609802_+	DUF1364 family protein	NA	NA	NA	NA
WP_012747575.1\|2609798_2610023_+	hypothetical protein	C9DGF5	Deftia_phage	1.1e-10	66.0
WP_012747576.1\|2610019_2610244_+	hypothetical protein	NA	NA	NA	NA
WP_041945502.1\|2610317_2611046_+	hypothetical protein	NA	NA	NA	NA
WP_150106777.1\|2611186_2611396_+	hypothetical protein	NA	NA	NA	NA
WP_049826090.1\|2612116_2612440_+	HNH endonuclease	A0A0U2C119	Paracoccus_phage	1.2e-16	50.5
WP_012747579.1\|2612593_2613085_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	5.6e-39	56.2
WP_080515741.1\|2613041_2614763_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	3.1e-116	40.8
WP_012747581.1\|2614753_2616382_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	3.2e-38	30.3
WP_012747582.1\|2616378_2617062_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	7.1e-40	42.9
WP_012747583.1\|2617138_2618590_+\|capsid	phage major capsid protein	A0A222ZHH0	Arthrobacter_phage	3.2e-05	24.7
WP_012747584.1\|2618641_2619094_+	hypothetical protein	NA	NA	NA	NA
WP_012747585.1\|2619111_2619378_+	hypothetical protein	NA	NA	NA	NA
WP_012747586.1\|2619382_2620051_+	hypothetical protein	NA	NA	NA	NA
WP_041945506.1\|2620053_2620425_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_167313228.1\|2620471_2620957_+	hypothetical protein	K7P712	Enterobacteria_phage	8.1e-06	32.6
WP_012747589.1\|2620953_2621319_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_012747590.1\|2621403_2622054_+	hypothetical protein	A0A2I7RHS5	Vibrio_phage	2.3e-11	51.4
WP_012747591.1\|2622055_2622283_+	hypothetical protein	NA	NA	NA	NA
WP_012747592.1\|2622279_2622642_+	hypothetical protein	NA	NA	NA	NA
WP_012747593.1\|2622656_2622923_+	hypothetical protein	NA	NA	NA	NA
WP_012747594.1\|2622922_2625478_+	hypothetical protein	A0A2I5ARC1	Synechococcus_phage	3.2e-08	33.9
WP_012747595.1\|2625474_2626407_+	hypothetical protein	NA	NA	NA	NA
WP_012747596.1\|2626403_2627282_+	DUF2163 domain-containing protein	I6NQ41	Burkholderia_phage	2.5e-05	27.7
WP_012747597.1\|2627278_2627719_+	hypothetical protein	Q5DN20	Alphaproteobacteria_virus	1.9e-09	31.2
WP_012747598.1\|2627715_2630946_+	hypothetical protein	A0A1B0V343	Roseobacter_phage	1.1e-42	27.0
WP_012747599.1\|2630942_2633180_+	hypothetical protein	K7XYL3	uncultured_Mediterranean_phage	1.3e-21	33.7
WP_012747600.1\|2633242_2633575_+	hypothetical protein	NA	NA	NA	NA
WP_012747601.1\|2633571_2633877_+	hypothetical protein	NA	NA	NA	NA
WP_012747602.1\|2633879_2634380_+	lysozyme	A0A088FRS5	Escherichia_phage	7.0e-37	50.6

DBSCAN-SWA_4

3627244 : 3634650

Erwinia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748537.1\|3627244_3627691_-	dUTP diphosphatase	G0YQD9	Erwinia_phage	4.8e-45	68.7
WP_012748538.1\|3627693_3628143_-	hypothetical protein	NA	NA	NA	NA
WP_012748539.1\|3628142_3629366_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	4.0e-33	31.3
WP_012748540.1\|3629489_3631169_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.6e-149	50.8
WP_012748541.1\|3631165_3632023_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.5e-47	41.3
WP_012748542.1\|3632019_3632310_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_012748543.1\|3632344_3633628_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.5e-155	65.2
WP_012748544.1\|3633645_3633924_+	cell division protein FtsB	NA	NA	NA	NA
WP_012748545.1\|3634023_3634650_+	nicotinamide mononucleotide transporter	A0A0F6YPU8	Sinorhizobium_phage	5.0e-08	25.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012792

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_012791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection