CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	1 crisprs	NA	12	0
NC_012790	Geobacillus sp. WCH70 plasmid pWCH7002, complete sequence	0 crisprs	NA	0	0
NC_012793	Geobacillus sp. WCH70, complete genome	6 crisprs	Cas14u_CAS-V,cas14j,cas14k,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cas6,csm6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,RT,csa3,c2c4_V-U1,DEDDh,DinG,Cas14b_CAS-V-F	22	26

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_012793_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012793_1

348817-350124

TypeIII

Consensus_repeat	Method
GTTTTTATCTTACCTATGAGGAATTGAAAC	PILER-CR
GTTTTTATCTTACCTATGAGGAATTGAAAC	CRISPRCasFinder
GTTTTTATCTTACCTATGAGGAATTGAAAC	CRT

19 spacers

cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cas6,csm6,csx1

The CRISPR arrays of NC_012793_1

>merge|NC_012793|1|348817-350124|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTACCTATGAGGAATTGAAACGACTTTTTCACTTCCTCCACGTAGCTGAATCGGATCGTTTTTATCTTACCTATGAGGAATTGAAACTCTGTCCGGGATGTACTGAAGCATACGGTTGACGGCGCGTTTTTATCTTACCTATGAGGAATTGAAACGCTCATTGTGCATGTCACGGTCGCGTGCTTTCATGACTTCGGTTTTTATCTTACCTATGAGGAATTGAAACTCATTTTCTCCGCGCCGAACAACTGACAACCTACCGGTTTTTATCTTACCTATGAGGAATTGAAACCATTCGGAGGGCTGACGGATGATTAAACTAGACGATCTGAGTTTTTATCTTACCTATGAGGAATTGAAACCGATCTCAAAAAAGGCGAGGAAACTGACTTGCATAAACAGTTTTTATCTTACCTATGAGGAATTGAAACGTTGACGGCAAGGTGTTTCGTTGGGTTGTGCCCGATGTTTTTATCTTACCTATGAGGAATTGAAACAAGCAGGCAGGATTAGATGTTGAGTGCGGAACAGGTGCACGTTTTTATCTTACCTATGAGGAATTGAAACCTATCTCATCATACCGACTTTTAAGTTGTCGTACTCGTTTTTATCTTACCTATGAGGAATTGAAACCAACCGGTAACCCGAATAGTTGACGACCGGATGGCGATTGTTTTTATCTTACCTATGAGGAATTGAAACCTCAAGACATCGAGGACATGCAGGAATTCGTGCAAACGTTTTTATCTTACCTATGAGGAATTGAAACACGTCACCCGGCAGTCCGTCAGCAAAATCGTTTCGGTTTTTATCTTACCTATGAGGAATTGAAACCAGGGACAGATGTCCTAAATGTTGGAAGCTAATTTGGTTTTTATCTTACCTATGAGGAATTGAAACTCAATGTTTTCGTCATAACCGGACCGCAACCATGAACGTGTTTTTATCTTACCTATGAGGAATTGAAACTCCGATGTCACGGGGACAGGAATTTCTCACGTTCCGGGGTTTTTATCTTACCTATGAGGAATTGAAACCAAGAAATCAGAAGGCTTCAGGCGGATCGAAAAGCGTTTTTATCTTACCTATGAGGAATTGAAACTATTTGTTGAGCTGCGCTTCTGTGTACTCGATTTCCGTTTTTATCTTACCTATGAGGAATTGAAACTTCCCCGCCTGCCGCGACCGCTTGGCCCCACTCTTGGTTTTTATCTTACCTATGAGGAATTGAAACAAATTCGCGCTTCGCTTCCACCGACACGATAGGCGGTTTTTATCTTACCTATGAGGAATTGAAAC

>NC_012793|1|1|348817-350124|PILER-CR
GTTTTTATCTTACCTATGAGGAATTGAAAC	GACTTTTTCACTTCCTCCACGTAGCTGAATCGGATC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCTGTCCGGGATGTACTGAAGCATACGGTTGACGGCGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	GCTCATTGTGCATGTCACGGTCGCGTGCTTTCATGACTTCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCATTTTCTCCGCGCCGAACAACTGACAACCTACCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CATTCGGAGGGCTGACGGATGATTAAACTAGACGATCTGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	CGATCTCAAAAAAGGCGAGGAAACTGACTTGCATAAACA
GTTTTTATCTTACCTATGAGGAATTGAAAC	GTTGACGGCAAGGTGTTTCGTTGGGTTGTGCCCGAT
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAGCAGGCAGGATTAGATGTTGAGTGCGGAACAGGTGCAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTATCTCATCATACCGACTTTTAAGTTGTCGTACTC
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAACCGGTAACCCGAATAGTTGACGACCGGATGGCGATT
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTCAAGACATCGAGGACATGCAGGAATTCGTGCAAAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ACGTCACCCGGCAGTCCGTCAGCAAAATCGTTTCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAGGGACAGATGTCCTAAATGTTGGAAGCTAATTTG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCAATGTTTTCGTCATAACCGGACCGCAACCATGAACGT
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCCGATGTCACGGGGACAGGAATTTCTCACGTTCCGGG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAAGAAATCAGAAGGCTTCAGGCGGATCGAAAAGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TATTTGTTGAGCTGCGCTTCTGTGTACTCGATTTCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TTCCCCGCCTGCCGCGACCGCTTGGCCCCACTCTTG
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAATTCGCGCTTCGCTTCCACCGACACGATAGGCG
GTTTTTATCTTACCTATGAGGAATTGAAAC

>NC_012793|1|1|348817-350124|CRISPRCasFinder
GTTTTTATCTTACCTATGAGGAATTGAAAC	GACTTTTTCACTTCCTCCACGTAGCTGAATCGGATC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCTGTCCGGGATGTACTGAAGCATACGGTTGACGGCGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	GCTCATTGTGCATGTCACGGTCGCGTGCTTTCATGACTTCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCATTTTCTCCGCGCCGAACAACTGACAACCTACCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CATTCGGAGGGCTGACGGATGATTAAACTAGACGATCTGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	CGATCTCAAAAAAGGCGAGGAAACTGACTTGCATAAACA
GTTTTTATCTTACCTATGAGGAATTGAAAC	GTTGACGGCAAGGTGTTTCGTTGGGTTGTGCCCGAT
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAGCAGGCAGGATTAGATGTTGAGTGCGGAACAGGTGCAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTATCTCATCATACCGACTTTTAAGTTGTCGTACTC
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAACCGGTAACCCGAATAGTTGACGACCGGATGGCGATT
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTCAAGACATCGAGGACATGCAGGAATTCGTGCAAAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ACGTCACCCGGCAGTCCGTCAGCAAAATCGTTTCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAGGGACAGATGTCCTAAATGTTGGAAGCTAATTTG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCAATGTTTTCGTCATAACCGGACCGCAACCATGAACGT
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCCGATGTCACGGGGACAGGAATTTCTCACGTTCCGGG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAAGAAATCAGAAGGCTTCAGGCGGATCGAAAAGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TATTTGTTGAGCTGCGCTTCTGTGTACTCGATTTCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TTCCCCGCCTGCCGCGACCGCTTGGCCCCACTCTTG
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAATTCGCGCTTCGCTTCCACCGACACGATAGGCG
GTTTTTATCTTACCTATGAGGAATTGAAAC

>NC_012793|1|1|348817-350124|CRT
GTTTTTATCTTACCTATGAGGAATTGAAAC	GACTTTTTCACTTCCTCCACGTAGCTGAATCGGATC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCTGTCCGGGATGTACTGAAGCATACGGTTGACGGCGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	GCTCATTGTGCATGTCACGGTCGCGTGCTTTCATGACTTCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCATTTTCTCCGCGCCGAACAACTGACAACCTACCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CATTCGGAGGGCTGACGGATGATTAAACTAGACGATCTGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	CGATCTCAAAAAAGGCGAGGAAACTGACTTGCATAAACA
GTTTTTATCTTACCTATGAGGAATTGAAAC	GTTGACGGCAAGGTGTTTCGTTGGGTTGTGCCCGAT
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAGCAGGCAGGATTAGATGTTGAGTGCGGAACAGGTGCAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTATCTCATCATACCGACTTTTAAGTTGTCGTACTC
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAACCGGTAACCCGAATAGTTGACGACCGGATGGCGATT
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTCAAGACATCGAGGACATGCAGGAATTCGTGCAAAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ACGTCACCCGGCAGTCCGTCAGCAAAATCGTTTCG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAGGGACAGATGTCCTAAATGTTGGAAGCTAATTTG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCAATGTTTTCGTCATAACCGGACCGCAACCATGAACGT
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCCGATGTCACGGGGACAGGAATTTCTCACGTTCCGGG
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAAGAAATCAGAAGGCTTCAGGCGGATCGAAAAGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TATTTGTTGAGCTGCGCTTCTGTGTACTCGATTTCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TTCCCCGCCTGCCGCGACCGCTTGGCCCCACTCTTG
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAATTCGCGCTTCGCTTCCACCGACACGATAGGCG
GTTTTTATCTTACCTATGAGGAATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012793.1\|WP_012749051.1\|353118_353856_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_012793.1\|WP_012749046.1\|341756_345887_+\|TIGR02680-family-protein	unknown	unknown	gnl\|CDD\|274256
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_012793.1\|WP_012749042.1\|337157_338060_-\|glycine/betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270246
NC_012793.1\|WP_012749044.1\|339100_340597_+\|TIGR02677-family-protein	unknown	unknown	gnl\|CDD\|378233
NC_012793.1\|WP_012749041.1\|335999_337127_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NC_012793.1\|WP_012749048.1\|347505_348543_+\|P1-family-peptidase	unknown	unknown	gnl\|CDD\|239071
NC_012793.1\|WP_012749045.1\|340600_341767_+\|TIGR02678-family-protein	unknown	unknown	gnl\|CDD\|378234
NC_012793.1\|WP_012749054.1\|356715_357717_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_012793.1\|WP_012749037.1\|333959_334274_+\|hypothetical-protein	unknown	unknown	unknown
NC_012793.1\|WP_012749053.1\|356215_356713_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_012793.1\|WP_012749047.1\|345883_347161_+\|TIGR02679-family-protein	unknown	unknown	gnl\|CDD\|274255
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_012793.1\|WP_012749050.1\|352146_353103_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|187821
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_012793.1\|WP_012749040.1\|335349_335985_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NC_012793.1\|WP_012749043.1\|338515_338956_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188306
NC_012793.1\|WP_041269791.1\|350426_352145_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09730_cas8b1_CAS-I-B	gnl\|CDD\|378190
NC_012793.1\|WP_012749052.1\|353860_356194_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688

Protein	Function_ID	Function_description	E-value
NC_012793.1\|WP_012749051.1\|353118_353856_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.56583e-28
NC_012793.1\|WP_012749046.1\|341756_345887_+\|TIGR02680-family-protein	gnl\|CDD\|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	0
NC_012793.1\|WP_012749048.1\|347505_348543_+\|P1-family-peptidase	gnl\|CDD\|239071	cd02253, DmpA, L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active heterodimeric form. The cleavage results in two polypeptide chains, with one chain containing an N-terminal nucleophile. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	5.62604e-169
NC_012793.1\|WP_012749044.1\|339100_340597_+\|TIGR02677-family-protein	gnl\|CDD\|378233	pfam09660, DUF2397, Protein of unknown function (DUF2397). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	0
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	5.8753e-70
NC_012793.1\|WP_012749041.1\|335999_337127_-\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	3.55134e-156
NC_012793.1\|WP_012749050.1\|352146_353103_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|187821	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csh2 family.	2.79859e-100
NC_012793.1\|WP_012749045.1\|340600_341767_+\|TIGR02678-family-protein	gnl\|CDD\|378234	pfam09661, DUF2398, Protein of unknown function (DUF2398). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	3.7298e-143
NC_012793.1\|WP_012749054.1\|356715_357717_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.98308e-171
NC_012793.1\|WP_012749042.1\|337157_338060_-\|glycine/betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270246	cd13528, PBP2_osmoprotectants, Substrate-binding domain of osmoregulatory ABC-type transporters; the type 2 periplasmic-binding protein fold. This family represents the periplasmic substrate-binding component of ABC transport systems that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, bacteria and archaea accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.33858e-141
NC_012793.1\|WP_012749053.1\|356215_356713_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.43489e-74
NC_012793.1\|WP_012749047.1\|345883_347161_+\|TIGR02679-family-protein	gnl\|CDD\|274255	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). [Hypothetical proteins, Conserved].	1.16157e-92
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.31951e-11
NC_012793.1\|WP_012749052.1\|353860_356194_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.99303e-43
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.31058e-34
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.16118e-33
NC_012793.1\|WP_012749040.1\|335349_335985_-\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	6.01504e-78
NC_012793.1\|WP_012749043.1\|338515_338956_-\|hypothetical-protein	gnl\|CDD\|188306	TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA].	0.000200184
NC_012793.1\|WP_041269791.1\|350426_352145_+\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|378190	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This minor cas protein is found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	1.35305e-171

>NC_012793.1|WP_012749048.1|347505_348543_+|P1-family-peptidase
MRKKIRELGIEIGSLETGKHNQITDVPGVKVGHVTLKKELDEKTVIRTGVTAILPHGGNIFLQKVPASCFVLNGFGKTAGLVQVEELGVMESPIMLTNTFSVGTVWQGTLEYLMEQNQEIGDTTSSVNIVVGECNDSYLNTVHFPVIEKEHAKLAIEQAVFDVEEGAVGAGTGTMCFGYKGGIGSSSRIIHGGIYTVGALVLSNFGKREELCIAQYRKPSFDETEIPNGSIMIIVATNAPLSSRQLKRLAKRAAFGLARTGSHIHHGSGDIIIAFSNGYTIPHFSESSYYQLPPLIRDDDPLMNELFQAAIESTEEAILNSLTMAETTTGRNGRIGEAIPYDLFQ
>NC_012793.1|WP_012749047.1|345883_347161_+|TIGR02679-family-protein
MKSLPEPAAEAAQFFRGEAGFRRLFCEMKKKYESLGRIGGTISLTNFTKEEKEAIAAFFGKEMARVSLQAFAKQLDKTRFAGISLEELLVHYFGEPLVANKERREAEQQEKAAFFQRLIAAYPSGAEWLTAALEHPNEYRLLHQAYAQQRDELYASICAVCEALRQLPKQGTYERLPLFAQKVTGDPHAFDLHTFQGKLLLSALEFYSRKKYQLSSVEEVNELLQSFGILREDILNFVTCAGILAETKEGIHPVFSAACETNMALNVPLREIVALTRAYPAKGNAVFVVENAGVFSELLDEAMPLVSTNGQLNLATLLLLDLLVESGARLYYSGDFDPEGLKMADRLAGRYGENLSLWHFTCEDYFASMPSVSLSEERLAKLQSISSPKLQPVKQEIERCKKAGYQEAILPVLRKDIEKEKAELS
>NC_012793.1|WP_012749046.1|341756_345887_+|TIGR02680-family-protein
MTNKWVLHRAGLLNFWYYDEEYFHFADGRLFLRGSNGSGKSVTMQSLIPVLLDGKKTPDRLDPFGSRARRMEDYLLGEKELVDRDERTGYLFLEYKRKHSDHYITTGIGLRAKRQKGMDFWGFVIFDNRRIGKDITLYKKEKTGEKIPLTKRELITVLGDGGTVVDTQKEYMELVNKYIFRFESLEAFQELIELLIQLRSPKLSKDFKPTVIYEILESSLPALTDDELRHLSETIENMDQAKQQLEQLERDEASLRRLCQHYQQYNEYMIWEKANEWLKAAKQEEKLTEEREQCLRDQERYAARKEELATEIQGLQNEQAVLRKRELDLASHEVFRAEEKYRETKQRLANVQDQIMKKERYLDDKQQQERKLKQEIAKSEDVLHQSAQTIDEQLEELRYAALESAFASHELNEEDFQRHRNEPFDFTLWRKEAEAYEKRLEEILSLWTRHDDLKRRYEDAYHELGEQQRLLDNLHNDAKKWHELLEMEKSRLQEAVFAWKEAHPDIPIDEETIQSFLRYLNELYERYHFEDVKKPFADRYYEALDQKKAEKVRWEHEIELVKREIAETEEELRRWKEQKDPELEHDEQTAQARAALQARGVAYVPFYASVEFYDHVPESLRERIESSLYHAGLLDALVTETDVSIVHDRILKPNPVEMAHTLAEYLRPDVDEDLGVSAERIESVLRSILISDEAQEGRFAMDESGHYSFGLLQGHAPKREQAIFIGRNARKRWRLSQIAQIEEKLQQLDELLQQKKEQLARVEATIASIHEAFQTFPSDRDVRAAFDEWDRTKRAIISKQQEVERKSEKLNSIARDWQQVKQTLREKAEGLDLEFTKERYEEARRWMKLYTGHLTELVLEHRSFLHQLQVSRYHQDQLETVQAEIDEAKGEINILASEQQRLLLEIQHMEQMLKQMGADDIRAEISRVRDRLEWVNKALPEKINEQAHIEQTIKSTHRQLEDLERKLQFASTLAAVWKRSFIAEVERGLVEVAENVDPHEQAKDVVRRYGSIGKEQTRSSVIAKLNSVFFQESANLVEYRLSQEPVALEEENPFAGIDLDEEMELKVSDWKEKRDRIILLLDYKGQRVTPFYLLKEMEKDILLQREYINEQDRELYEDIILKTVGRILRSRIQRAERWVKDMNALMQQRDASSGLLLSIQWKPKTAETEEEMDTKELVELLRMNSRLLKEEDLQRVTMHFRSKINRAREMLEEKGQGNTLHQVIKEVLDYRKWFTFTLYYQKTNEPKRELTNQRFYQFSGGEKAMAMYIPLFAAAYARYQEASEEAPYIISLDEAFAGVDENNIRDMFDLVESLGFNYIMNSQALWGDYDTVPSLSICELVRPKNASHVTVIRYYWNGTMKRLVTDWDEQEMVVKQ
>NC_012793.1|WP_012749045.1|340600_341767_+|TIGR02678-family-protein
MERDFDEKAKIALKVLLENFWITRERDPELFQLIRERENIVKRYVQEKFGYRLIVHRYFAKLEKIPAEPEAWMGIESFQEPLDYALFCCLMAYLEGKEVEEKFLLSDVCEEIKAMYPGEVPLDWTNYQQRRALIRVLKTAEELGVVKRVDGEIEGFAQREDHEALYEVPVLSRYFMRSYPKDLTQYKTMEELLEEEWKTAPQDYRRHRIYRQLFLSPVVYRQQKDDPDFYYLRNFRHRLREDIEAHSDFRYELYKNAALLTLPERENVYTLFPNQKGTSDIILHFASIVREHLLDYPPDEYGKIRMTQADFQRLLTICKERYGEGWGKTYRDMTPAQLTSVLLEELKQWKMADVEKETGMIMLYPLLGRIVGHYPPDFMKKGMDDDDE
>NC_012793.1|WP_012749044.1|339100_340597_+|TIGR02677-family-protein
MDASWLKPISEVKYLAVDNAYRYRAILRYFYTQHERMRQYLFPEEVYAFLKQHDEFRDYTEDDLQQDLDQLVKWKNLIARQETTHIRTIEEFKKKRFRYQCSPYTVEIERMIRALEQLGDSFGGSLEKTRFDRLYTSLVRIETIIKNGFAEKRDEMNQVWEETFDYFKKIIQNSADYIAYLNSENMEEQMMSEAFLVYKEKFTTYLRDFIVALQKTSMQIEKLLEDLQEEEVRQFVHHVVDYQMTIPRWEDLSLSREQMVEERMETWRSLKEWFLGRNGHDSELAFLQKQTNEAIRRITRVVQRLGERHHHFRSRKKDYLYLAQWFSKLDSLEDAHKLSSVVFGCFHTKHVVTDNDATEDMYRDIWEEAPSEWTVKPRVRHYQEKKKPQAIVDNENKKKQTMVEFLQQKQREEEELKQLVQDGKIILRELPVVAPHVRKTLLSWIAKAMAREDRVVKTEIGWKVKIVKKDDSFIELHAEDGTMIMPNYEIHFLEDRED
>NC_012793.1|WP_012749043.1|338515_338956_-|hypothetical-protein
MVEALLQEILQEVKLTRNDIQTLSNRVDKLEKRMSRVEERVATLEKDMASVKERLANVESTVIVLDEKITETKAISEAVRHGQEVLTAKYDALSLDVHELKGKVTHLTNVLEDKVLPLLHDHESGMQVLNNRVFKVESTLQRLVSP
>NC_012793.1|WP_012749042.1|337157_338060_-|glycine/betaine-ABC-transporter-substrate-binding-protein
MRKWMFLFLSAVMLFTLTACGAGEKAEKGKIVVASKKFTEQVILAHLLAEYLKANTDLDVEMKDSLGGAFVLQQAMEKGDVDLYVEYTGTGHLNILKNKYDPSKTPEEIYEETKKQYKEKFNIAWLKPLGFNNTYALAMRKELADKLGVKTYSDLAKKSDQLVFGTDAEFFERSDGYDGLVDAYGFKFKKTANIDPDLQYEAAKNGDIDVITAYTTDARIKKYNLVVLKDDKHYFPPYHAVPIIRQEVLDANPGLGKVLNKLEGILTDEKMMELNAQVNMEGKRPKQVAIDFLKAEGLID
>NC_012793.1|WP_012749041.1|335999_337127_-|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein
MIRFENVWKQYDDGFVALKNINLEIQKGELVTLIGPSGCGKTTTMRMINRLTEPTSGTIYIDGQDIAKMNPVELRRNIGYVIQQIGLFPHMTIAENIALVPKLKKWEPSAYQKRVDELLDLVGLDPAMFKHRYPSELSGGQQQRVGVIRALAAEPDIILMDEPFSALDPISREQLQEDIVKLQEEIRKTIVFVTHDMDEAIKISNRIAIMKDGEIVQFATPDQILRRPVNSFVRDFIGENRLAQRQTAVPTAEDLMSHSIATISPKRGLAEAFRFMKEKKVDSLIVTDKKQSFLGVVTLKKLERHYQQEHLLVTDIADFDVTTLTKDADVTEVAEIFQQQDVSAIPVLAGNRLVGVITRSSMMRGLAEWEFQKQP
>NC_012793.1|WP_012749040.1|335349_335985_-|ABC-transporter-permease
MNLLDIMIERKQEIWIAFQEHILLSGTAMIIAILVAVPLGIVLTRHKKLAEPIIGIAAIIQTIPSLALLGFMLPIFGIGKLPAIIALTLYALLPILRNTYTGILGVDPALVDAGRGMGMTSRQILWMVELPLSLPVIMAGVRTATVLTIGVAALATFIGAGGLGDLIDRGLRIADKNLILAGAIPAAVLAILFDLLLRKLENKVTPKGLKS
>NC_012793.1|WP_012749037.1|333959_334274_+|hypothetical-protein
MSSLLESIEKELKRRAYETMIDFLESYQGQVEEAIEEFQDGTRAFYRANDEYVPHWQGESRAAYESIYGDLRQIEAWIYAAADDLFHEISREIAQIRQKIEERQ
>NC_012793.1|WP_041269791.1|350426_352145_+|TIGR02556-family-CRISPR-associated-protein
MIEAIAQIGRIELGGKDQAAIDQFIENPGYPNCIHILLQRGDNGAFVWEDCEVEEQKSDFRKYLFRSGSSRGVNYSPTAKITTVENTYQQKVLGWFKKICKINGSDFFRGIQETLEKEKDRILQKLQSKLALSNERTILSLKVDGSYLYDIPEFRDAFMFLINEKDLELSASNQVCSICGQRKDTVIGKMSVFRFYTLDKPGFITGGLDEEKAWRNYPVCLSCKSYIEEGRRFIEENLRFQFYGFSYLLIPKLIVPVAEDNDSFAEVLEYLSSHKKEVRIHQEQVESFMTTEEDVMDILKDMKNVVSIQLLFLQKIQSAERILLLIEDVLPSRISELFKAKSYVEQLLYAEGNHPFHFGFIRTFFHNSYDKYFLHIVESVFKKRPLSISFLTKFIMEQLRKELPAYESGENSFFYKTRQAVAVILFLEQAGVLPVKGGAAMSEKFDVLFEKYGKQLDTPEKKAVFLLGSLTQMLLDIQQNKRGSKPFLKQLMGLKMDERTVKGLLPKVINKLEEYESYHFIHKQLAEEISTLFLLSSPRWKMSVDELNFYFACGMNLVSKVKESLIIAKEEA
>NC_012793.1|WP_012749050.1|352146_353103_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MLQNRSELLFLYDVQWANPNGDPVDENKPRIDEETGRNIVTDVRLKRTIRDYLHDFCHQEIFVREIAGDNEYIQDAKMRAEDFLVKDGEKLDKSKLSLADMKRIINEEILRQCIDVRLFGVTLPIEKNAKEKSSITHTGPVQFKMGQSLHAVKLEYIKGTGAFASGSGMMQKTFREEYVLPYSLIAFYGVINEAAAAYTKLTEEDVQLLLDAMWNGTKNLISRSKVGQIPRLLLRVVYKEKHFHIGELDKYISLHSEKVDEEIRDVSDYVLDTAPLIRAMEKQKEKIERVEIKKDDRLVCSEDIIESLKAAGIPVEIK
>NC_012793.1|WP_012749051.1|353118_353856_+|type-I-B-CRISPR-associated-protein-Cas5
MNVLVFDIRADFGHFRKIYSTSSPLTYSIIPPTSFFGILGAIIGLGKEENEYLRYVNHETVNMAIRVMSPVRKMRIGLNHVNTKGNVWVPKQRREGARTQIRTEFLRFPYFRCYVHVKEQSLFQQLIEYVQQHRSVYTVCMGLSECIADVRYVSLEEFRLVNNNAEAVSIASVIPEKYVTSLCIESGKEYRKERFAFQIDTERIVSDYEEVLFEASGEAIRAVVSHYWENKVGERIVFLYDHGKE
>NC_012793.1|WP_012749052.1|353860_356194_+|CRISPR-associated-helicase/endonuclease-Cas3
MYSHPHYHLSKHLQGVEHLSFLFLSEKEIPIAKQSWFSQLNKWIAVFHDIGKANGFFQRYLQSPEQFQEAPQLKSHALLSAALLIPFLKENEKFDEFWRCISFIIVKRHHGNLDDWLEEFKKFGEETKTLLWRQIDSIDFEQLNEQIKSLYLLDENERWTKEKFQKWLDDLFAEARQLRRFIMKWNKTNNSVVPYLYVLFLFSLLIDADKSEVGIIQKETWSFSERREIPDNLIHTYKARQSWKNTKMNRLREQAFQEVVGTPIDVNKHFYSLNLPTGMGKTLSSLQFALQLKAEIEKKWRVKPRIIYSLPFLSVIDQTSKVIKEIFSVNGIDVDHRLLLEHHHLADTQYTVIKDDERYDATYEIAKLLIEGWNAEIILTTFVQLFETIFSNKNSTLRKFHRLANAIFIIDEVQAVPHRYWLAIKQMFMAMAQELNCYFLFSSATDPGIFENTVLIVDPKKYFQPLSRVTLFSHVQESLTIESFWDQVEIETEKTYLFIMNTIESAKRLYEEIIDTIGTEEVTFLSTHIPPKERLRRIEDAKKGAYRIVISTQLIEAGVDIDFDVVYRDLAPLDSIQQAAGRCNRHGDRKGEVHVVSLTDGRRLYASYIYDSIRLDITKTILSKQTKIEEEQFLQLITKYFRLLSNRMSNAESERLLKGIMTLYFDGEETSDRVPVSHFRLIEGEEEKINVFIELDEEAQEIFQQYEKVIRLTDRWERNKQFAAMKSLFYQYVISIPRTIDNKPPIVNGIGYVSYDSLQDFYDTVLGYKTKSEGIIW
>NC_012793.1|WP_012749053.1|356215_356713_+|CRISPR-associated-protein-Cas4
MPVTGTDIWYYYICPREVWLMKHQIAPDQEDEALDIGRFISETYYQRNKKEISIGNIVVDRIRKEDGQLVVGEVKKSSRYLKSAKMQLLYYLDTLREMGINAKGELLFPEERKKETVEWTEEAKQELEKAVADIRRIARMPVPPPPKKISFCAKCAYREYCWAEE
>NC_012793.1|WP_012749054.1|356715_357717_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFQSGELRRKDNSLYFETEERKRYIPVENTNDIYIFGEVDVSKKFLEFAAQKEIIVHYFNHHGYYVGSFYPREHLNAGHVILKQAEHYIDSNKRLDLAQRFVEGAIQQMTRVIKYYRTRLSEADVLARALEVIEQETERMRQAQSVEQLMAAEGHIREMYYSTFDVIIRHPDFVFEKRTKRPPHNRLNALISFGNSIVYTMCLSEIYKTYLDPRIGFLHSTNFRRFSLNLDVAEIFKPIIVDRLIFTLVNKKMLSAKHFEKLTDGILLNEEGRKLFVSELEKKMQTTVQHRHLGKSVSYRRLIRLELYKIQKHLLGEKTYEPYAAKW
>NC_012793.1|WP_012749055.1|357726_357990_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDFNEKRVAKALKIARKYLHWVQNSVFEGEITVANYQKLKMELQNIMDPDEDSVIFYTFRTQKYSQREEMGLKKGGDEFIL
>NC_012793.1|WP_012749056.1|358004_358754_+|CRISPR-associated-endoribonuclease-Cas6
MRLTIVMSGRDNPVTLPLHYQQQLQGLLYHSLRNPKFSQFLHEVGFRKEKRSFKLFTFSRLYGPHQLNFERKTITFYEEFYWHVGTVLPELTQELGEYLLLHPDVQIGGQPVEVQRIDVEKRDIEGEEIEIEMLSPLTVYSTYETVDGSKKTQFFSPYDEVFSHLVELNFRNKYEAYYGVPPKERLFIEPIRVTEKHKVVTIFKGFYITAWLGHYRLRSSPGNLTFLYRVGIGGRNSQGFGMFRLLSER
>NC_012793.1|WP_012749057.1|361724_362924_+|CRISPR-associated-protein
MYQHIVITCGISLLTGRANVFSINRDETMAEIRPLLDVKEIDEEIEKKVERWLQYAKQFAHEVAHRPNHVSAEYSTVHELRKKGKLAERPTIVLFVTQTVGGRIVESILTSLLETHFQANVRVIYIDIDVKNPKRMHETLGEYMSKLSYALSKGEPTSTCFAPIGGYKVMTSLGYIVGAFLNYPTAYLHEDHQVLHEIPPVPIHIKEEFVYEHLDLLRKCQKDAVPVQELSYQEKQCVKQYPSLFYQEDGFVCLSAFGEFLLEHEKYRHLFDTAYFVSKQIVDVIKHNRHQSLFIFQQLHELVKKLKYKEGNMFDLQHEKEFKTIRQEQVKYHLYKGASNGQTAFRLAYRYDEREDRLYANYLWLDHDRYKREASQGRGLYEDWSEFLDITNDLMTVVK
>NC_012793.1|WP_012749058.1|362929_364243_+|TIGR02221-family-CRISPR-associated-protein
MARNVLLSFLGRNDYEYCFYTYRGQRSSYTRFVQTAIYELFRNEEPMDVIIFATKEAKESNWNDKVRDGQQVEGIKTAFQRIAPEANVKLVEMESGQDESANWKLFDSIIAEIGEGDTIYFDITHSFRSIPFVALIVLNYARLVKKATIGTLAYGWFEKLGRPNEVKQLSPEQRLVPIVDLTNMAELLDWTNGVDQFLRTGDASLIKELTARENRKVFCDANASPLLKREVAELNKLAKQLDQTEKSIRTCRSLQVEEEVEKFRYQLEQVRHSQAEAIKPLVPILDEMEKKYSNFGGNTIINGWEVARWCVDNGLIQSALTMLSENVVTAICYAFQLEVTNVMIRDDLHSVIRIIIRKTKKEEWKVHNVSFVEEMVEKLLPYRELLKPFGEVAELRNDMNHAGVRANPFTADRFAQRVKTVLNAIKPFFEEMAALSQ

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Crispr_ID: NC_012793_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012793_2

358937-361432

TypeIII

Consensus_repeat	Method
GTTTGTATCTTAACTATGAGGAATTGAAAC	PILER-CR
GTTTGTATCTTAACTATGAGGAATTGAAAC	CRISPRCasFinder
GTTTGTATCTTAACTATGAGGAATTGAAAC	CRT

37 spacers

cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,csm6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

The CRISPR arrays of NC_012793_2

>merge|NC_012793|2|358937-361432|PILER-CR,CRISPRCasFinder,CRT
GTTTGTATCTTAACTATGAGGAATTGAAACTCAAGTGAAAAAATACGCTGGTTTCTTCCGTGTGACGTTTGTATCTTAACTATGAGGAATTGAAACTAGGTGATCTCTTCCTCGTATTGCTTTAGGATGTAAAGCAGTTTGTATCTTAACTATGAGGAATTGAAACTGATGATAGCGTGAGATATTTTGAAGCAGGCGTCACTCGTTTGTATCTTAACTATGAGGAATTGAAACCACGGATACCGGTAGATACTTCTTTTCTAGTTTCTCCGTTTGTATCTTAACTATGAGGAATTGAAACAGGTGCATCAAATGAAACAGTATTTTTGTCAGATTCGGTTTGTATCTTAACTATGAGGAATTGAAACACTAAAATAAGAAAACCGAATCACCTTATGAAAAGTTGTTTGTATCTTAACTATGAGGAATTGAAACGTCTTGGAATGGCATGATGATAGGGTGATTATAATGAAGTTTGTATCTTAACTATGAGGAATTGAAACAAGAATTTCGCTTGATCGATGACAAGTGTACGTGTGTTTGTATCTTAACTATGAGGAATTGAAACGTCTTGGAATGGCATGATGATAGGGTGATTATAATGAAGTTTGTATCTTAACTATGAGGAATTGAAACAAGAATTTCGCTTGATCGATGACAAGTGTACGTGTGTTTGTATCTTAACTATGAGGAATTGAAACATTGAAATATAAAACATAAATATTGACTTAAACAAGTTTGTATCTTAACTATGAGGAATTGAAACCTCTTTTTGTTCTTGAAGCTGTTTCACATATGCTAGGTTTGTATCTTAACTATGAGGAATTGAAACATTTGATCCCCATCATATCACCTCTTTCGCAATGATGGGTTTGTATCTTAACTATGAGGAATTGAAACATAAAAGTCAACGAATAAATAAAACGAATAAATAAAAGTTTGTATCTTAACTATGAGGAATTGAAACCAAGAAAGGCAACGATGACGATGTTTGCTTCAATGGTTTGTATCTTAACTATGAGGAATTGAAACGTATTTCATTTTTATGTAGTTTTCCGCGATGTATTTTGTTTGTATCTTAACTATGAGGAATTGAAACCAAATACTCTTAAATAACTCGCTAATCATATTGAAGTTTGTATCTTAACTATGAGGAATTGAAACCATCGGGCATGGGAAGGTGTGAAAAATATTGCTGGGTTTGTATCTTAACTATGAGGAATTGAAACGCAAGCCATTTGACCGATTTGGCTTCATCTTCGCGGTTTGTATCTTAACTATGAGGAATTGAAACTCAATCTTTTTGGCGATCTTATCAATGTTTTCGTCAGTTTGTATCTTAACTATGAGGAATTGAAACATTTTTAACTCACTCAACTTGTTCGGCTCGCGCGTTTCGTTTGTATCTTAACTATGAGGAATTGAAACAAAAAATGATTGCTTCATGTGACCATTACATAAATATTGTTTGTATCTTAACTATGAGGAATTGAAACCGAGATGATAATATTTCTAGTGTCAATTTTCCGATTAGGTTTGTATCTTAACTATGAGGAATTGAAACCGCAATTCGCCACTTTCAACAACAGCGCTAGATGCCGTTTGTATCTTAACTATGAGGAATTGAAACTGTTGAAACTCCTGCACCGCCGCATCCTTCTTGGCAGAAGTTTGTATCTTAACTATGAGGAATTGAAACAAACGGGAAGTAATTCTGTGGAAATCTGACTCATCGTTTGTATCTTAACTATGAGGAATTGAAACCAGCGACTTTTACAAGGTTAACGCCCTTCAAATACTCGTTTGTATCTTAACTATGAGGAATTGAAACTTATAGCGAAGCGACCAATAATGGATATGATGGGGAACGTTTGTATCTTAACTATGAGGAATTGAAACCCATCATCAGGTAGCAAGTTGCCATCTTGCTACGACAAGTTTGTATCTTAACTATGAGGAATTGAAACGATTGGATGCTGGCAATAATTAAATCCTGTAACTCCGTTTGTATCTTAACTATGAGGAATTGAAACACCCATACTTCTTCGCACTCACAGCACCACGAATATAGTTTGTATCTTAACTATGAGGAATTGAAACTATACTTCTTCAACCACTCGTACTGTCCGTTCTAATTGTTTGTATCTTAACTATGAGGAATTGAAACGCTCTTGCCAATAACGCGGCGCAAAAAGGGAATTTCGTTTGTATCTTAACTATGAGGAATTGAAACTTTGTTGAGCAAGAAGCTGTTGCTTTTGGGCAAGTAGTTTGTATCTTAACTATGAGGAATTGAAACTCCTGATGGACATAGATCTTTCCGTCAATCAGTTTCGTTTGTATCTTAACTATGAGGAATTGAAACTAAAGGCGTAAGGCGTGCGCTTTCGTGAACTTTTTCGTTTGTATCTTAACTATGAGGATTGAAACTGACTATTTAAGATGTATGCTCACCCAACACTCTGTGTTTGCATTTTAACTGTGAGAAATAAATCC

>NC_012793|2|2|358937-361301|PILER-CR
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCAAGTGAAAAAATACGCTGGTTTCTTCCGTGTGAC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TAGGTGATCTCTTCCTCGTATTGCTTTAGGATGTAAAGCA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TGATGATAGCGTGAGATATTTTGAAGCAGGCGTCACTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CACGGATACCGGTAGATACTTCTTTTCTAGTTTCTCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	AGGTGCATCAAATGAAACAGTATTTTTGTCAGATTCG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ACTAAAATAAGAAAACCGAATCACCTTATGAAAAGTT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTGAAATATAAAACATAAATATTGACTTAAACAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CTCTTTTTGTTCTTGAAGCTGTTTCACATATGCTAG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTTGATCCCCATCATATCACCTCTTTCGCAATGATGG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATAAAAGTCAACGAATAAATAAAACGAATAAATAAAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAAGAAAGGCAACGATGACGATGTTTGCTTCAATG
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTATTTCATTTTTATGTAGTTTTCCGCGATGTATTTT
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAAATACTCTTAAATAACTCGCTAATCATATTGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CATCGGGCATGGGAAGGTGTGAAAAATATTGCTGG
GTTTGTATCTTAACTATGAGGAATTGAAAC	GCAAGCCATTTGACCGATTTGGCTTCATCTTCGCG
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCAATCTTTTTGGCGATCTTATCAATGTTTTCGTCA
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTTTTAACTCACTCAACTTGTTCGGCTCGCGCGTTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAAAAATGATTGCTTCATGTGACCATTACATAAATATT
GTTTGTATCTTAACTATGAGGAATTGAAAC	CGAGATGATAATATTTCTAGTGTCAATTTTCCGATTAG
GTTTGTATCTTAACTATGAGGAATTGAAAC	CGCAATTCGCCACTTTCAACAACAGCGCTAGATGCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TGTTGAAACTCCTGCACCGCCGCATCCTTCTTGGCAGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAACGGGAAGTAATTCTGTGGAAATCTGACTCATC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAGCGACTTTTACAAGGTTAACGCCCTTCAAATACTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TTATAGCGAAGCGACCAATAATGGATATGATGGGGAAC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CCATCATCAGGTAGCAAGTTGCCATCTTGCTACGACAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	GATTGGATGCTGGCAATAATTAAATCCTGTAACTCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	ACCCATACTTCTTCGCACTCACAGCACCACGAATATA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TATACTTCTTCAACCACTCGTACTGTCCGTTCTAATT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GCTCTTGCCAATAACGCGGCGCAAAAAGGGAATTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TTTGTTGAGCAAGAAGCTGTTGCTTTTGGGCAAGTA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCCTGATGGACATAGATCTTTCCGTCAATCAGTTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC

>NC_012793|2|2|358937-361432|CRISPRCasFinder
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCAAGTGAAAAAATACGCTGGTTTCTTCCGTGTGAC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TAGGTGATCTCTTCCTCGTATTGCTTTAGGATGTAAAGCA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TGATGATAGCGTGAGATATTTTGAAGCAGGCGTCACTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CACGGATACCGGTAGATACTTCTTTTCTAGTTTCTCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	AGGTGCATCAAATGAAACAGTATTTTTGTCAGATTCG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ACTAAAATAAGAAAACCGAATCACCTTATGAAAAGTT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTGAAATATAAAACATAAATATTGACTTAAACAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CTCTTTTTGTTCTTGAAGCTGTTTCACATATGCTAG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTTGATCCCCATCATATCACCTCTTTCGCAATGATGG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATAAAAGTCAACGAATAAATAAAACGAATAAATAAAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAAGAAAGGCAACGATGACGATGTTTGCTTCAATG
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTATTTCATTTTTATGTAGTTTTCCGCGATGTATTTT
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAAATACTCTTAAATAACTCGCTAATCATATTGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CATCGGGCATGGGAAGGTGTGAAAAATATTGCTGG
GTTTGTATCTTAACTATGAGGAATTGAAAC	GCAAGCCATTTGACCGATTTGGCTTCATCTTCGCG
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCAATCTTTTTGGCGATCTTATCAATGTTTTCGTCA
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTTTTAACTCACTCAACTTGTTCGGCTCGCGCGTTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAAAAATGATTGCTTCATGTGACCATTACATAAATATT
GTTTGTATCTTAACTATGAGGAATTGAAAC	CGAGATGATAATATTTCTAGTGTCAATTTTCCGATTAG
GTTTGTATCTTAACTATGAGGAATTGAAAC	CGCAATTCGCCACTTTCAACAACAGCGCTAGATGCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TGTTGAAACTCCTGCACCGCCGCATCCTTCTTGGCAGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAACGGGAAGTAATTCTGTGGAAATCTGACTCATC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAGCGACTTTTACAAGGTTAACGCCCTTCAAATACTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TTATAGCGAAGCGACCAATAATGGATATGATGGGGAAC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CCATCATCAGGTAGCAAGTTGCCATCTTGCTACGACAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	GATTGGATGCTGGCAATAATTAAATCCTGTAACTCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	ACCCATACTTCTTCGCACTCACAGCACCACGAATATA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TATACTTCTTCAACCACTCGTACTGTCCGTTCTAATT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GCTCTTGCCAATAACGCGGCGCAAAAAGGGAATTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TTTGTTGAGCAAGAAGCTGTTGCTTTTGGGCAAGTA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCCTGATGGACATAGATCTTTCCGTCAATCAGTTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TAAAGGCGTAAGGCGTGCGCTTTCGTGAACTTTTTC
GTTTGTATCTTAACTATGAGGATTGAAACT	GACTATTTAAGATGTATGCTCACCCAACACTCTGT
GTTTGCATTTTAACTGTGAGAAATAAATCC

>NC_012793|2|2|358937-361432|CRT
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCAAGTGAAAAAATACGCTGGTTTCTTCCGTGTGAC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TAGGTGATCTCTTCCTCGTATTGCTTTAGGATGTAAAGCA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TGATGATAGCGTGAGATATTTTGAAGCAGGCGTCACTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CACGGATACCGGTAGATACTTCTTTTCTAGTTTCTCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	AGGTGCATCAAATGAAACAGTATTTTTGTCAGATTCG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ACTAAAATAAGAAAACCGAATCACCTTATGAAAAGTT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTCTTGGAATGGCATGATGATAGGGTGATTATAATGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAGAATTTCGCTTGATCGATGACAAGTGTACGTGT
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTGAAATATAAAACATAAATATTGACTTAAACAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CTCTTTTTGTTCTTGAAGCTGTTTCACATATGCTAG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTTGATCCCCATCATATCACCTCTTTCGCAATGATGG
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATAAAAGTCAACGAATAAATAAAACGAATAAATAAAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAAGAAAGGCAACGATGACGATGTTTGCTTCAATG
GTTTGTATCTTAACTATGAGGAATTGAAAC	GTATTTCATTTTTATGTAGTTTTCCGCGATGTATTTT
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAAATACTCTTAAATAACTCGCTAATCATATTGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	CATCGGGCATGGGAAGGTGTGAAAAATATTGCTGG
GTTTGTATCTTAACTATGAGGAATTGAAAC	GCAAGCCATTTGACCGATTTGGCTTCATCTTCGCG
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCAATCTTTTTGGCGATCTTATCAATGTTTTCGTCA
GTTTGTATCTTAACTATGAGGAATTGAAAC	ATTTTTAACTCACTCAACTTGTTCGGCTCGCGCGTTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAAAAATGATTGCTTCATGTGACCATTACATAAATATT
GTTTGTATCTTAACTATGAGGAATTGAAAC	CGAGATGATAATATTTCTAGTGTCAATTTTCCGATTAG
GTTTGTATCTTAACTATGAGGAATTGAAAC	CGCAATTCGCCACTTTCAACAACAGCGCTAGATGCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TGTTGAAACTCCTGCACCGCCGCATCCTTCTTGGCAGAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	AAACGGGAAGTAATTCTGTGGAAATCTGACTCATC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CAGCGACTTTTACAAGGTTAACGCCCTTCAAATACTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TTATAGCGAAGCGACCAATAATGGATATGATGGGGAAC
GTTTGTATCTTAACTATGAGGAATTGAAAC	CCATCATCAGGTAGCAAGTTGCCATCTTGCTACGACAA
GTTTGTATCTTAACTATGAGGAATTGAAAC	GATTGGATGCTGGCAATAATTAAATCCTGTAACTCC
GTTTGTATCTTAACTATGAGGAATTGAAAC	ACCCATACTTCTTCGCACTCACAGCACCACGAATATA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TATACTTCTTCAACCACTCGTACTGTCCGTTCTAATT
GTTTGTATCTTAACTATGAGGAATTGAAAC	GCTCTTGCCAATAACGCGGCGCAAAAAGGGAATTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TTTGTTGAGCAAGAAGCTGTTGCTTTTGGGCAAGTA
GTTTGTATCTTAACTATGAGGAATTGAAAC	TCCTGATGGACATAGATCTTTCCGTCAATCAGTTTC
GTTTGTATCTTAACTATGAGGAATTGAAAC	TAAAGGCGTAAGGCGTGCGCTTTCGTGAACTTTTTC
GTTTGTATCTTAACTATGAGGATTGAAACT	GACTATTTAAGATGTATGCTCACCCAACACTCTGT
GTTTGCATTTTAACTGTGAGAAATAAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012793.1\|WP_012749051.1\|353118_353856_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_012793.1\|WP_012749065.1\|371794_372328_+\|hypothetical-protein	unknown	unknown	unknown
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	gnl\|CDD\|187788
NC_012793.1\|WP_012749052.1\|353860_356194_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_012793.1\|WP_012749054.1\|356715_357717_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_012793.1\|WP_012749053.1\|356215_356713_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_012793.1\|WP_041269791.1\|350426_352145_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09730_cas8b1_CAS-I-B	gnl\|CDD\|378190
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_012793.1\|WP_012749067.1\|373435_374509_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NC_012793.1\|WP_012749048.1\|347505_348543_+\|P1-family-peptidase	unknown	unknown	gnl\|CDD\|239071
NC_012793.1\|WP_012749047.1\|345883_347161_+\|TIGR02679-family-protein	unknown	unknown	gnl\|CDD\|274255
NC_012793.1\|WP_012749050.1\|352146_353103_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|187821

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_012793.1\|WP_012749051.1\|353118_353856_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	1.1e-34	114.8	0.1
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.5e-61	203.7	0.3
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	8.4e-31	101.6	0.1
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	2.1e-14	48.7	0.2
NC_012793.1\|WP_012749052.1\|353860_356194_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	1.6e-53	176.8	11.0
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	8e-73	240.3	0.4
NC_012793.1\|WP_012749053.1\|356215_356713_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	2.2e-54	178.7	0.4
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	8.5e-78	256.5	0.0
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	7e-37	122.3	0.4
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	1.5e-94	312.3	11.2
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.8e-29	96.6	0.7
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	3.7e-22	73.2	0.1
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	7.4e-42	138.4	0.2
NC_012793.1\|WP_012749054.1\|356715_357717_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	3.9e-139	458.0	10.8
NC_012793.1\|WP_041269791.1\|350426_352145_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09730_cas8b1_CAS-I-B	2e-121	401.2	11.7
NC_012793.1\|WP_012749050.1\|352146_353103_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	7e-100	328.7	1.4

Protein	Function_ID	Function_description	E-value
NC_012793.1\|WP_012749051.1\|353118_353856_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.56583e-28
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.0472e-54
NC_012793.1\|WP_012749067.1\|373435_374509_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.85174e-169
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.79737e-38
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|187788	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	5.92007e-12
NC_012793.1\|WP_012749052.1\|353860_356194_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.99303e-43
NC_012793.1\|WP_012749054.1\|356715_357717_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.98308e-171
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	5.8753e-70
NC_012793.1\|WP_012749053.1\|356215_356713_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.43489e-74
NC_012793.1\|WP_041269791.1\|350426_352145_+\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|378190	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This minor cas protein is found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	1.35305e-171
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.31058e-34
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	5.41789e-101
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.16118e-33
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.31951e-11
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.56259e-38
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.23397e-75
NC_012793.1\|WP_012749048.1\|347505_348543_+\|P1-family-peptidase	gnl\|CDD\|239071	cd02253, DmpA, L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active heterodimeric form. The cleavage results in two polypeptide chains, with one chain containing an N-terminal nucleophile. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	5.62604e-169
NC_012793.1\|WP_012749047.1\|345883_347161_+\|TIGR02679-family-protein	gnl\|CDD\|274255	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). [Hypothetical proteins, Conserved].	1.16157e-92
NC_012793.1\|WP_012749050.1\|352146_353103_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|187821	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csh2 family.	2.79859e-100

>NC_012793.1|WP_012749056.1|358004_358754_+|CRISPR-associated-endoribonuclease-Cas6
MRLTIVMSGRDNPVTLPLHYQQQLQGLLYHSLRNPKFSQFLHEVGFRKEKRSFKLFTFSRLYGPHQLNFERKTITFYEEFYWHVGTVLPELTQELGEYLLLHPDVQIGGQPVEVQRIDVEKRDIEGEEIEIEMLSPLTVYSTYETVDGSKKTQFFSPYDEVFSHLVELNFRNKYEAYYGVPPKERLFIEPIRVTEKHKVVTIFKGFYITAWLGHYRLRSSPGNLTFLYRVGIGGRNSQGFGMFRLLSER
>NC_012793.1|WP_012749055.1|357726_357990_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDFNEKRVAKALKIARKYLHWVQNSVFEGEITVANYQKLKMELQNIMDPDEDSVIFYTFRTQKYSQREEMGLKKGGDEFIL
>NC_012793.1|WP_012749054.1|356715_357717_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFQSGELRRKDNSLYFETEERKRYIPVENTNDIYIFGEVDVSKKFLEFAAQKEIIVHYFNHHGYYVGSFYPREHLNAGHVILKQAEHYIDSNKRLDLAQRFVEGAIQQMTRVIKYYRTRLSEADVLARALEVIEQETERMRQAQSVEQLMAAEGHIREMYYSTFDVIIRHPDFVFEKRTKRPPHNRLNALISFGNSIVYTMCLSEIYKTYLDPRIGFLHSTNFRRFSLNLDVAEIFKPIIVDRLIFTLVNKKMLSAKHFEKLTDGILLNEEGRKLFVSELEKKMQTTVQHRHLGKSVSYRRLIRLELYKIQKHLLGEKTYEPYAAKW
>NC_012793.1|WP_012749053.1|356215_356713_+|CRISPR-associated-protein-Cas4
MPVTGTDIWYYYICPREVWLMKHQIAPDQEDEALDIGRFISETYYQRNKKEISIGNIVVDRIRKEDGQLVVGEVKKSSRYLKSAKMQLLYYLDTLREMGINAKGELLFPEERKKETVEWTEEAKQELEKAVADIRRIARMPVPPPPKKISFCAKCAYREYCWAEE
>NC_012793.1|WP_012749052.1|353860_356194_+|CRISPR-associated-helicase/endonuclease-Cas3
MYSHPHYHLSKHLQGVEHLSFLFLSEKEIPIAKQSWFSQLNKWIAVFHDIGKANGFFQRYLQSPEQFQEAPQLKSHALLSAALLIPFLKENEKFDEFWRCISFIIVKRHHGNLDDWLEEFKKFGEETKTLLWRQIDSIDFEQLNEQIKSLYLLDENERWTKEKFQKWLDDLFAEARQLRRFIMKWNKTNNSVVPYLYVLFLFSLLIDADKSEVGIIQKETWSFSERREIPDNLIHTYKARQSWKNTKMNRLREQAFQEVVGTPIDVNKHFYSLNLPTGMGKTLSSLQFALQLKAEIEKKWRVKPRIIYSLPFLSVIDQTSKVIKEIFSVNGIDVDHRLLLEHHHLADTQYTVIKDDERYDATYEIAKLLIEGWNAEIILTTFVQLFETIFSNKNSTLRKFHRLANAIFIIDEVQAVPHRYWLAIKQMFMAMAQELNCYFLFSSATDPGIFENTVLIVDPKKYFQPLSRVTLFSHVQESLTIESFWDQVEIETEKTYLFIMNTIESAKRLYEEIIDTIGTEEVTFLSTHIPPKERLRRIEDAKKGAYRIVISTQLIEAGVDIDFDVVYRDLAPLDSIQQAAGRCNRHGDRKGEVHVVSLTDGRRLYASYIYDSIRLDITKTILSKQTKIEEEQFLQLITKYFRLLSNRMSNAESERLLKGIMTLYFDGEETSDRVPVSHFRLIEGEEEKINVFIELDEEAQEIFQQYEKVIRLTDRWERNKQFAAMKSLFYQYVISIPRTIDNKPPIVNGIGYVSYDSLQDFYDTVLGYKTKSEGIIW
>NC_012793.1|WP_012749051.1|353118_353856_+|type-I-B-CRISPR-associated-protein-Cas5
MNVLVFDIRADFGHFRKIYSTSSPLTYSIIPPTSFFGILGAIIGLGKEENEYLRYVNHETVNMAIRVMSPVRKMRIGLNHVNTKGNVWVPKQRREGARTQIRTEFLRFPYFRCYVHVKEQSLFQQLIEYVQQHRSVYTVCMGLSECIADVRYVSLEEFRLVNNNAEAVSIASVIPEKYVTSLCIESGKEYRKERFAFQIDTERIVSDYEEVLFEASGEAIRAVVSHYWENKVGERIVFLYDHGKE
>NC_012793.1|WP_012749050.1|352146_353103_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MLQNRSELLFLYDVQWANPNGDPVDENKPRIDEETGRNIVTDVRLKRTIRDYLHDFCHQEIFVREIAGDNEYIQDAKMRAEDFLVKDGEKLDKSKLSLADMKRIINEEILRQCIDVRLFGVTLPIEKNAKEKSSITHTGPVQFKMGQSLHAVKLEYIKGTGAFASGSGMMQKTFREEYVLPYSLIAFYGVINEAAAAYTKLTEEDVQLLLDAMWNGTKNLISRSKVGQIPRLLLRVVYKEKHFHIGELDKYISLHSEKVDEEIRDVSDYVLDTAPLIRAMEKQKEKIERVEIKKDDRLVCSEDIIESLKAAGIPVEIK
>NC_012793.1|WP_041269791.1|350426_352145_+|TIGR02556-family-CRISPR-associated-protein
MIEAIAQIGRIELGGKDQAAIDQFIENPGYPNCIHILLQRGDNGAFVWEDCEVEEQKSDFRKYLFRSGSSRGVNYSPTAKITTVENTYQQKVLGWFKKICKINGSDFFRGIQETLEKEKDRILQKLQSKLALSNERTILSLKVDGSYLYDIPEFRDAFMFLINEKDLELSASNQVCSICGQRKDTVIGKMSVFRFYTLDKPGFITGGLDEEKAWRNYPVCLSCKSYIEEGRRFIEENLRFQFYGFSYLLIPKLIVPVAEDNDSFAEVLEYLSSHKKEVRIHQEQVESFMTTEEDVMDILKDMKNVVSIQLLFLQKIQSAERILLLIEDVLPSRISELFKAKSYVEQLLYAEGNHPFHFGFIRTFFHNSYDKYFLHIVESVFKKRPLSISFLTKFIMEQLRKELPAYESGENSFFYKTRQAVAVILFLEQAGVLPVKGGAAMSEKFDVLFEKYGKQLDTPEKKAVFLLGSLTQMLLDIQQNKRGSKPFLKQLMGLKMDERTVKGLLPKVINKLEEYESYHFIHKQLAEEISTLFLLSSPRWKMSVDELNFYFACGMNLVSKVKESLIIAKEEA
>NC_012793.1|WP_012749048.1|347505_348543_+|P1-family-peptidase
MRKKIRELGIEIGSLETGKHNQITDVPGVKVGHVTLKKELDEKTVIRTGVTAILPHGGNIFLQKVPASCFVLNGFGKTAGLVQVEELGVMESPIMLTNTFSVGTVWQGTLEYLMEQNQEIGDTTSSVNIVVGECNDSYLNTVHFPVIEKEHAKLAIEQAVFDVEEGAVGAGTGTMCFGYKGGIGSSSRIIHGGIYTVGALVLSNFGKREELCIAQYRKPSFDETEIPNGSIMIIVATNAPLSSRQLKRLAKRAAFGLARTGSHIHHGSGDIIIAFSNGYTIPHFSESSYYQLPPLIRDDDPLMNELFQAAIESTEEAILNSLTMAETTTGRNGRIGEAIPYDLFQ
>NC_012793.1|WP_012749047.1|345883_347161_+|TIGR02679-family-protein
MKSLPEPAAEAAQFFRGEAGFRRLFCEMKKKYESLGRIGGTISLTNFTKEEKEAIAAFFGKEMARVSLQAFAKQLDKTRFAGISLEELLVHYFGEPLVANKERREAEQQEKAAFFQRLIAAYPSGAEWLTAALEHPNEYRLLHQAYAQQRDELYASICAVCEALRQLPKQGTYERLPLFAQKVTGDPHAFDLHTFQGKLLLSALEFYSRKKYQLSSVEEVNELLQSFGILREDILNFVTCAGILAETKEGIHPVFSAACETNMALNVPLREIVALTRAYPAKGNAVFVVENAGVFSELLDEAMPLVSTNGQLNLATLLLLDLLVESGARLYYSGDFDPEGLKMADRLAGRYGENLSLWHFTCEDYFASMPSVSLSEERLAKLQSISSPKLQPVKQEIERCKKAGYQEAILPVLRKDIEKEKAELS
>NC_012793.1|WP_012749057.1|361724_362924_+|CRISPR-associated-protein
MYQHIVITCGISLLTGRANVFSINRDETMAEIRPLLDVKEIDEEIEKKVERWLQYAKQFAHEVAHRPNHVSAEYSTVHELRKKGKLAERPTIVLFVTQTVGGRIVESILTSLLETHFQANVRVIYIDIDVKNPKRMHETLGEYMSKLSYALSKGEPTSTCFAPIGGYKVMTSLGYIVGAFLNYPTAYLHEDHQVLHEIPPVPIHIKEEFVYEHLDLLRKCQKDAVPVQELSYQEKQCVKQYPSLFYQEDGFVCLSAFGEFLLEHEKYRHLFDTAYFVSKQIVDVIKHNRHQSLFIFQQLHELVKKLKYKEGNMFDLQHEKEFKTIRQEQVKYHLYKGASNGQTAFRLAYRYDEREDRLYANYLWLDHDRYKREASQGRGLYEDWSEFLDITNDLMTVVK
>NC_012793.1|WP_012749058.1|362929_364243_+|TIGR02221-family-CRISPR-associated-protein
MARNVLLSFLGRNDYEYCFYTYRGQRSSYTRFVQTAIYELFRNEEPMDVIIFATKEAKESNWNDKVRDGQQVEGIKTAFQRIAPEANVKLVEMESGQDESANWKLFDSIIAEIGEGDTIYFDITHSFRSIPFVALIVLNYARLVKKATIGTLAYGWFEKLGRPNEVKQLSPEQRLVPIVDLTNMAELLDWTNGVDQFLRTGDASLIKELTARENRKVFCDANASPLLKREVAELNKLAKQLDQTEKSIRTCRSLQVEEEVEKFRYQLEQVRHSQAEAIKPLVPILDEMEKKYSNFGGNTIINGWEVARWCVDNGLIQSALTMLSENVVTAICYAFQLEVTNVMIRDDLHSVIRIIIRKTKKEEWKVHNVSFVEEMVEKLLPYRELLKPFGEVAELRNDMNHAGVRANPFTADRFAQRVKTVLNAIKPFFEEMAALSQ
>NC_012793.1|WP_012749059.1|364268_365174_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MVDNERLKVSAIVETTYKLKLITPMAMHGANAKEKAEFRISSLRGVWRYWWRTLQEEKNHAALLEQEEEWFGGTQVKKQKSPVSLLLPRPLSGSKVESVLPHRTKSSFAVKTIPAGQETAVIMRALRKHEQLLETYELYFQYMLHLAGMGQRARRGFGAVQWEGHRWKTVADFAASLQDVLIRLGQSERFQFADSGCIVKLKGEVHTYHPVLSAVWVGEGQKTPQEVLKRFGEASHRANRYGRLGAVRPKRFASPLWCTVRKIGDLYYPIITEVEADSSVYKQPQYQRDRDSFLEIVGVRI
>NC_012793.1|WP_012749060.1|365170_366817_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSERQLVIFTVGPVQSFIASARKTEDFWSGSYILSYLVREAMKTLYQADPHCEIVYPLVSKEELENPSSRRLHIASIPNRFTAVVEGEAEKAKAILQETEQSVRNVFYDFCFQAIDNVFPFLLDHEKEKLKTTTEAQIRSFLEIYWVAEPYDETASFKQIRERAERRLGALKNEKRYESVPQHGLVCTVCKEREALCLEDIDEFDRYGTMKQKLERTWERCAGIYKEPEENSEQEQYVGRIKNNEFLCGICLGKRVARDYFTPIFKAAGTKFRTFPSVMEIGSGKYYAIVMMDGDNMGKWFSGENKEDYSRISQKLAHFSQEVVPNIVETDYHGRLVYAGGDDVLAFVPVDEALKIAKELRFAFSDEKKGLGKGATASVGLIVAHKKAPLQLVLNEVRRLEQKAKSYYSETTRQQKDALAIAVHTHSGEISEAVLPWTVEQEKITDELHQFLSLLKESLSPTFIHHFTQAFYPLLHEEHHLKWENKEMVRTELRRLLKRSVKEGAKIDNLDSHVETLMKLHDIVPSGYDFLYLLKILTFFNRKEGTEK
>NC_012793.1|WP_012749061.1|366813_367941_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MTKLTLTPVDTFFFKNHHVTEAGEDTVMESMFPPRPNTIYGALRAAYIHAHTTFDKFIRETDEHVKRWMGTPNQRGEFQLQYCALTYKQDILLPLPLDYQVIEEKNSLKAYPLLLTEDKKPSSLQGKWRLASTRREKTKSSQHQYVSLHEWKHAILHEAPISSLISLSKLVVREEKVGIRLDIGRRTAQKGFLYRVTQGRFRDDGALAVYIRNGPDFSKVKFARIGGENRPWIIQQSEETFTLWNDKEKKQLAEKIEQTKVAKIIFLSPAIFEKGSRPRDFDGEKVTLPNGVTVKWLTAAIGRPELYGGWDIVRHRPKPRKWMVPAGSVIYVEVEEGDISKLLSVANGMHFTDEGAEEGFGFAVITSASKSEEEL
>NC_012793.1|WP_012749062.1|367940_368819_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYSIVRPFFLHVVTSVHAGSGSEIGLVDLPIQREKHTGFPKIESSSLKGALRYHIAQSLNEGEKKRFELVFGSEKGEENNTQSSAIALSDARVLLFPVKSMRGVFAWITCPYVLERFNNEVTLHQYDIELLPVPAPNTVSSNQLLVIEDKVVLEEYTFKATVSEDAQQLAERLTQMVAEDLQLSVNERLVVLTNDDFSDFVKLSTEVNARIKINPDTGTVDTGALWYEENVPPETIFYSFLYIGNVRGEGVEGLREAKEVEAFLLKENRFPKVFQLGGNSTLGRGMLRTIWL
>NC_012793.1|WP_012749063.1|368837_369221_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MREKVQRVGIENGRASFAFQEVKKAKEKDSVNFESYRSYVKKMPSLIQVNGLGQALAFCYQKRKEYEEIYRSIHAWLKQRFSSFFQDDEKELVEVVINLPSADYRAVTMEVLALLNWMCKFAEGMAK
>NC_012793.1|WP_012749064.1|369241_370381_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MLLHPKDTQKVVRQANKQHIAHLAYHIHYLLPYKREQRKGRQEYLLEDKMRLSAVTVHPDLKTVANTVSQQREQAFVNLAKTYHVKKLKAKPIGKIIHGLGAGHVRETSLTIHPVYGIPYIPASSIKGVIRHWFIQAYCDGKEEKLPSNEKGVLVFGTQQQRGIVQFHDIFLINGLQITPDVLTVHMKDYYGKKGAATDTQSPNPVKFLTVTVSDVDIYVTGDAVHPKIGDTSALMEEVTVWTIRALTELGIGSKTSSGYGYFTDCEDVTETQFLPQVKKAKEQQQQQALLERKKEEEKRLTEMTPEDRLVYQIESLTDSPQDQEISKGKLYQEVLKAKSKKAAQALQAYWHRIGQWNVKSSKKKQYEKVQAIRTLLES
>NC_012793.1|WP_012749065.1|371794_372328_+|hypothetical-protein
MKKRMSFSVLAVLLFFASSFSFSSNVKAAERKVSNNPSQEQILEMAAELEYIFTEIIIENDKTGKYFVNEEELKNSSYNQEEKEAIKFFAEYLNQEKNGISNLSKKSDVSTMSAKSTVKKCLQEALGIGNDIINEFMGYVEKKQWIAAAGILAVAGIAVQPVTVFIFAMTCGAGSAS
>NC_012793.1|WP_012749067.1|373435_374509_+|ABC-transporter-ATP-binding-protein
MEKEAIIRFERVTKEYDGLVVLDDVSFEIERGKFYTLLGPSGCGKTTILRLIAGFTEPTEGTIYFHGKPVNHVPANKRQVNTVFQDYALFPHLNVFENVAFGLRIKKKKRSEIEEKVKQALRFVNLEGYENRSIQEMSGGQRQRVAIARAIVNEPEVLLLDEPLSALDLKLRTEMQYELRELQRSLGITFIFVTHDQEEALAMSDQIFVLNKGKIQQSGTPKDIYDEPINRFVADFIGESNILRGTMIEDYLVEFAGKRFTCVDKGFRPNEPVDIVIRPEDLDITTKDQGKLQVRVDSLLFRGVHYELCCYDEDGNEWLVHSTKKAEVGEEIGLYFDPEDIHVMRISEDDGERSDEK

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Crispr_ID: NC_012793_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012793_3

370553-371450

TypeIII

Consensus_repeat	Method
GTTTTTATCTTACCTATGAGGAATTGAAAC	PILER-CR
GTTTTTATCTTACCTATGAGGAATTGAAAC	CRISPRCasFinder
NNNNNNNNGTTTTTATCTTACCTATGAGGAATTGAAAC	CRT

13 spacers

cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,csm6,cas6,cas2,cas14k

The CRISPR arrays of NC_012793_3

>merge|NC_012793|3|370553-371450|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTACCTATGAGGAATTGAAACAAGGGTTGAAAAAAGTGGTCAACGTCCAGCTTGATCCGTTTTTATCTTACCTATGAGGAATTGAAACATAAACGAGCATTTTTGTGATGAAACGCATACCAGTTTTTATCTTACCTATGAGGAATTGAAACATGCGTAGGCGTTGACGATGGATTCCTTGATTGTGTCCGTTTTTATCTTACCTATGAGGAATTGAAACACAGGCTTCATCGTGACATCCACACGAATGCCACGTTTTTATCTTACCTATGAGGAATTGAAACTCTATATAGATAGCCATGTAATGCCCATAATGGTTGTTTTTATCTTACCTATGAGGAATTGAAACATACTGGCGCTCCACCGTTATCCATAATATTTTTGTGTTTTTATCTTACCTATGAGGAATTGAAACGAATGATGTTTAATGTTTTTTCTTGTTTAGTTAGTTTTAGTTTTTATCTTACCTATGAGGAATTGAAACTAAGTATAACACGGGAGGGGTCCGAGTGGGAAAACGGTTTTTATCTTACCTATGAGGAATTGAAACTGTGTTCGAGGAACAATTTGCTGAGAGTGGGTACAAGAGTTTTTATCTTACCTATGAGGAATTGAAACATATTGAAATCATTACCGTAGTGACTGCAAAGGGCGAGTTTTTATCTTACCTATGAGGAATTGAAACCTTCCGAGAAGGTGCAAGTGATTGGGCAGGAAAAGCGTTTTTATCTTACCTATGAGGAATTGAAACAGCTACACCTGCTAATGCTTTCCGCTTATTCATTTGATGTTTTTATCTTACCTATGAGGAATTGAAACTTTCATCCGAATATTTCAGAAAATCTTTAATTGTTTTTATGTTTTTATCTTACCTATGAGGAATTGAAAC

>NC_012793|3|3|370553-371450|PILER-CR
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAGGGTTGAAAAAAGTGGTCAACGTCCAGCTTGATCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATAAACGAGCATTTTTGTGATGAAACGCATACCA
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATGCGTAGGCGTTGACGATGGATTCCTTGATTGTGTCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ACAGGCTTCATCGTGACATCCACACGAATGCCAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCTATATAGATAGCCATGTAATGCCCATAATGGTT
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATACTGGCGCTCCACCGTTATCCATAATATTTTTGT
GTTTTTATCTTACCTATGAGGAATTGAAAC	GAATGATGTTTAATGTTTTTTCTTGTTTAGTTAGTTTTA
GTTTTTATCTTACCTATGAGGAATTGAAAC	TAAGTATAACACGGGAGGGGTCCGAGTGGGAAAACG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TGTGTTCGAGGAACAATTTGCTGAGAGTGGGTACAAGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATATTGAAATCATTACCGTAGTGACTGCAAAGGGCGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTTCCGAGAAGGTGCAAGTGATTGGGCAGGAAAAGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	AGCTACACCTGCTAATGCTTTCCGCTTATTCATTTGAT
GTTTTTATCTTACCTATGAGGAATTGAAAC	TTTCATCCGAATATTTCAGAAAATCTTTAATTGTTTTTAT
GTTTTTATCTTACCTATGAGGAATTGAAAC

>NC_012793|3|3|370553-371450|CRISPRCasFinder
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAGGGTTGAAAAAAGTGGTCAACGTCCAGCTTGATCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATAAACGAGCATTTTTGTGATGAAACGCATACCA
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATGCGTAGGCGTTGACGATGGATTCCTTGATTGTGTCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ACAGGCTTCATCGTGACATCCACACGAATGCCAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCTATATAGATAGCCATGTAATGCCCATAATGGTT
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATACTGGCGCTCCACCGTTATCCATAATATTTTTGT
GTTTTTATCTTACCTATGAGGAATTGAAAC	GAATGATGTTTAATGTTTTTTCTTGTTTAGTTAGTTTTA
GTTTTTATCTTACCTATGAGGAATTGAAAC	TAAGTATAACACGGGAGGGGTCCGAGTGGGAAAACG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TGTGTTCGAGGAACAATTTGCTGAGAGTGGGTACAAGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATATTGAAATCATTACCGTAGTGACTGCAAAGGGCGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTTCCGAGAAGGTGCAAGTGATTGGGCAGGAAAAGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	AGCTACACCTGCTAATGCTTTCCGCTTATTCATTTGAT
GTTTTTATCTTACCTATGAGGAATTGAAAC	TTTCATCCGAATATTTCAGAAAATCTTTAATTGTTTTTAT
GTTTTTATCTTACCTATGAGGAATTGAAAC

>NC_012793|3|3|370553-371442|CRT
GTTTTTATCTTACCTATGAGGAATTGAAAC	AAGGGTTGAAAAAAGTGGTCAACGTCCAGCTTGATCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATAAACGAGCATTTTTGTGATGAAACGCATACCA
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATGCGTAGGCGTTGACGATGGATTCCTTGATTGTGTCC
GTTTTTATCTTACCTATGAGGAATTGAAAC	ACAGGCTTCATCGTGACATCCACACGAATGCCAC
GTTTTTATCTTACCTATGAGGAATTGAAAC	TCTATATAGATAGCCATGTAATGCCCATAATGGTT
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATACTGGCGCTCCACCGTTATCCATAATATTTTTGT
GTTTTTATCTTACCTATGAGGAATTGAAAC	GAATGATGTTTAATGTTTTTTCTTGTTTAGTTAGTTTTA
GTTTTTATCTTACCTATGAGGAATTGAAAC	TAAGTATAACACGGGAGGGGTCCGAGTGGGAAAACG
GTTTTTATCTTACCTATGAGGAATTGAAAC	TGTGTTCGAGGAACAATTTGCTGAGAGTGGGTACAAGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	ATATTGAAATCATTACCGTAGTGACTGCAAAGGGCGA
GTTTTTATCTTACCTATGAGGAATTGAAAC	CTTCCGAGAAGGTGCAAGTGATTGGGCAGGAAAAGC
GTTTTTATCTTACCTATGAGGAATTGAAAC	AGCTACACCTGCTAATGCTTTCCGCTTATTCATTTGAT
GTTTTTATCTTACCTATGAGGAATTGAAAC	TTTCATCCGAATATTTCAGAAAATCTTTAATT
GTTTTTATGTTTTTATCTTACCTATGAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012793.1\|WP_012749074.1\|381668_382835_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_012793.1\|WP_012749065.1\|371794_372328_+\|hypothetical-protein	unknown	unknown	unknown
NC_012793.1\|WP_012749068.1\|374498_375290_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	gnl\|CDD\|187788
NC_012793.1\|WP_012749067.1\|373435_374509_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_012793.1\|WP_012749069.1\|375300_376107_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_012793.1\|WP_012749076.1\|383611_385135_+\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|225177
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NC_012793.1\|WP_012748853.1\|380062_381250_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|379252
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_012793.1\|WP_012749070.1\|376103_377177_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270381
NC_012793.1\|WP_041269563.1\|383054_383612_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376684
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NC_012793.1\|WP_012749072.1\|377528_378776_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14k	-	gnl\|CDD\|366606

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	8.4e-31	101.6	0.1
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	1.5e-94	312.3	11.2
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.5e-61	203.7	0.3
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	3.7e-22	73.2	0.1
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.8e-29	96.6	0.7
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	2.1e-14	48.7	0.2
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	7.4e-42	138.4	0.2
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	7e-37	122.3	0.4
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	8e-73	240.3	0.4
NC_012793.1\|WP_012749072.1\|377528_378776_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14k	-	1.9e-32	107.0	15.5
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	8.5e-78	256.5	0.0

Protein	Function_ID	Function_description	E-value
NC_012793.1\|WP_012749074.1\|381668_382835_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.41538e-99
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.79737e-38
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.0472e-54
NC_012793.1\|WP_012749068.1\|374498_375290_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.26036e-78
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|187788	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	5.92007e-12
NC_012793.1\|WP_012749067.1\|373435_374509_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.85174e-169
NC_012793.1\|WP_012749069.1\|375300_376107_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.34938e-79
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	5.8753e-70
NC_012793.1\|WP_012749076.1\|383611_385135_+\|flotillin-family-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	5.40975e-108
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.23397e-75
NC_012793.1\|WP_012748853.1\|380062_381250_-\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.93942e-11
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.31058e-34
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	5.41789e-101
NC_012793.1\|WP_012749070.1\|376103_377177_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270381	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.17083e-152
NC_012793.1\|WP_041269563.1\|383054_383612_+\|hypothetical-protein	gnl\|CDD\|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	3.10497e-05
NC_012793.1\|WP_012749055.1\|357726_357990_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.16118e-33
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.31951e-11
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.56259e-38
NC_012793.1\|WP_012749072.1\|377528_378776_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|366606	pfam01385, OrfB_IS605, Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.	5.46e-40

>NC_012793.1|WP_012749064.1|369241_370381_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MLLHPKDTQKVVRQANKQHIAHLAYHIHYLLPYKREQRKGRQEYLLEDKMRLSAVTVHPDLKTVANTVSQQREQAFVNLAKTYHVKKLKAKPIGKIIHGLGAGHVRETSLTIHPVYGIPYIPASSIKGVIRHWFIQAYCDGKEEKLPSNEKGVLVFGTQQQRGIVQFHDIFLINGLQITPDVLTVHMKDYYGKKGAATDTQSPNPVKFLTVTVSDVDIYVTGDAVHPKIGDTSALMEEVTVWTIRALTELGIGSKTSSGYGYFTDCEDVTETQFLPQVKKAKEQQQQQALLERKKEEEKRLTEMTPEDRLVYQIESLTDSPQDQEISKGKLYQEVLKAKSKKAAQALQAYWHRIGQWNVKSSKKKQYEKVQAIRTLLES
>NC_012793.1|WP_012749063.1|368837_369221_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MREKVQRVGIENGRASFAFQEVKKAKEKDSVNFESYRSYVKKMPSLIQVNGLGQALAFCYQKRKEYEEIYRSIHAWLKQRFSSFFQDDEKELVEVVINLPSADYRAVTMEVLALLNWMCKFAEGMAK
>NC_012793.1|WP_012749062.1|367940_368819_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYSIVRPFFLHVVTSVHAGSGSEIGLVDLPIQREKHTGFPKIESSSLKGALRYHIAQSLNEGEKKRFELVFGSEKGEENNTQSSAIALSDARVLLFPVKSMRGVFAWITCPYVLERFNNEVTLHQYDIELLPVPAPNTVSSNQLLVIEDKVVLEEYTFKATVSEDAQQLAERLTQMVAEDLQLSVNERLVVLTNDDFSDFVKLSTEVNARIKINPDTGTVDTGALWYEENVPPETIFYSFLYIGNVRGEGVEGLREAKEVEAFLLKENRFPKVFQLGGNSTLGRGMLRTIWL
>NC_012793.1|WP_012749061.1|366813_367941_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MTKLTLTPVDTFFFKNHHVTEAGEDTVMESMFPPRPNTIYGALRAAYIHAHTTFDKFIRETDEHVKRWMGTPNQRGEFQLQYCALTYKQDILLPLPLDYQVIEEKNSLKAYPLLLTEDKKPSSLQGKWRLASTRREKTKSSQHQYVSLHEWKHAILHEAPISSLISLSKLVVREEKVGIRLDIGRRTAQKGFLYRVTQGRFRDDGALAVYIRNGPDFSKVKFARIGGENRPWIIQQSEETFTLWNDKEKKQLAEKIEQTKVAKIIFLSPAIFEKGSRPRDFDGEKVTLPNGVTVKWLTAAIGRPELYGGWDIVRHRPKPRKWMVPAGSVIYVEVEEGDISKLLSVANGMHFTDEGAEEGFGFAVITSASKSEEEL
>NC_012793.1|WP_012749060.1|365170_366817_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSERQLVIFTVGPVQSFIASARKTEDFWSGSYILSYLVREAMKTLYQADPHCEIVYPLVSKEELENPSSRRLHIASIPNRFTAVVEGEAEKAKAILQETEQSVRNVFYDFCFQAIDNVFPFLLDHEKEKLKTTTEAQIRSFLEIYWVAEPYDETASFKQIRERAERRLGALKNEKRYESVPQHGLVCTVCKEREALCLEDIDEFDRYGTMKQKLERTWERCAGIYKEPEENSEQEQYVGRIKNNEFLCGICLGKRVARDYFTPIFKAAGTKFRTFPSVMEIGSGKYYAIVMMDGDNMGKWFSGENKEDYSRISQKLAHFSQEVVPNIVETDYHGRLVYAGGDDVLAFVPVDEALKIAKELRFAFSDEKKGLGKGATASVGLIVAHKKAPLQLVLNEVRRLEQKAKSYYSETTRQQKDALAIAVHTHSGEISEAVLPWTVEQEKITDELHQFLSLLKESLSPTFIHHFTQAFYPLLHEEHHLKWENKEMVRTELRRLLKRSVKEGAKIDNLDSHVETLMKLHDIVPSGYDFLYLLKILTFFNRKEGTEK
>NC_012793.1|WP_012749059.1|364268_365174_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MVDNERLKVSAIVETTYKLKLITPMAMHGANAKEKAEFRISSLRGVWRYWWRTLQEEKNHAALLEQEEEWFGGTQVKKQKSPVSLLLPRPLSGSKVESVLPHRTKSSFAVKTIPAGQETAVIMRALRKHEQLLETYELYFQYMLHLAGMGQRARRGFGAVQWEGHRWKTVADFAASLQDVLIRLGQSERFQFADSGCIVKLKGEVHTYHPVLSAVWVGEGQKTPQEVLKRFGEASHRANRYGRLGAVRPKRFASPLWCTVRKIGDLYYPIITEVEADSSVYKQPQYQRDRDSFLEIVGVRI
>NC_012793.1|WP_012749058.1|362929_364243_+|TIGR02221-family-CRISPR-associated-protein
MARNVLLSFLGRNDYEYCFYTYRGQRSSYTRFVQTAIYELFRNEEPMDVIIFATKEAKESNWNDKVRDGQQVEGIKTAFQRIAPEANVKLVEMESGQDESANWKLFDSIIAEIGEGDTIYFDITHSFRSIPFVALIVLNYARLVKKATIGTLAYGWFEKLGRPNEVKQLSPEQRLVPIVDLTNMAELLDWTNGVDQFLRTGDASLIKELTARENRKVFCDANASPLLKREVAELNKLAKQLDQTEKSIRTCRSLQVEEEVEKFRYQLEQVRHSQAEAIKPLVPILDEMEKKYSNFGGNTIINGWEVARWCVDNGLIQSALTMLSENVVTAICYAFQLEVTNVMIRDDLHSVIRIIIRKTKKEEWKVHNVSFVEEMVEKLLPYRELLKPFGEVAELRNDMNHAGVRANPFTADRFAQRVKTVLNAIKPFFEEMAALSQ
>NC_012793.1|WP_012749057.1|361724_362924_+|CRISPR-associated-protein
MYQHIVITCGISLLTGRANVFSINRDETMAEIRPLLDVKEIDEEIEKKVERWLQYAKQFAHEVAHRPNHVSAEYSTVHELRKKGKLAERPTIVLFVTQTVGGRIVESILTSLLETHFQANVRVIYIDIDVKNPKRMHETLGEYMSKLSYALSKGEPTSTCFAPIGGYKVMTSLGYIVGAFLNYPTAYLHEDHQVLHEIPPVPIHIKEEFVYEHLDLLRKCQKDAVPVQELSYQEKQCVKQYPSLFYQEDGFVCLSAFGEFLLEHEKYRHLFDTAYFVSKQIVDVIKHNRHQSLFIFQQLHELVKKLKYKEGNMFDLQHEKEFKTIRQEQVKYHLYKGASNGQTAFRLAYRYDEREDRLYANYLWLDHDRYKREASQGRGLYEDWSEFLDITNDLMTVVK
>NC_012793.1|WP_012749056.1|358004_358754_+|CRISPR-associated-endoribonuclease-Cas6
MRLTIVMSGRDNPVTLPLHYQQQLQGLLYHSLRNPKFSQFLHEVGFRKEKRSFKLFTFSRLYGPHQLNFERKTITFYEEFYWHVGTVLPELTQELGEYLLLHPDVQIGGQPVEVQRIDVEKRDIEGEEIEIEMLSPLTVYSTYETVDGSKKTQFFSPYDEVFSHLVELNFRNKYEAYYGVPPKERLFIEPIRVTEKHKVVTIFKGFYITAWLGHYRLRSSPGNLTFLYRVGIGGRNSQGFGMFRLLSER
>NC_012793.1|WP_012749055.1|357726_357990_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDFNEKRVAKALKIARKYLHWVQNSVFEGEITVANYQKLKMELQNIMDPDEDSVIFYTFRTQKYSQREEMGLKKGGDEFIL
>NC_012793.1|WP_012749065.1|371794_372328_+|hypothetical-protein
MKKRMSFSVLAVLLFFASSFSFSSNVKAAERKVSNNPSQEQILEMAAELEYIFTEIIIENDKTGKYFVNEEELKNSSYNQEEKEAIKFFAEYLNQEKNGISNLSKKSDVSTMSAKSTVKKCLQEALGIGNDIINEFMGYVEKKQWIAAAGILAVAGIAVQPVTVFIFAMTCGAGSAS
>NC_012793.1|WP_012749067.1|373435_374509_+|ABC-transporter-ATP-binding-protein
MEKEAIIRFERVTKEYDGLVVLDDVSFEIERGKFYTLLGPSGCGKTTILRLIAGFTEPTEGTIYFHGKPVNHVPANKRQVNTVFQDYALFPHLNVFENVAFGLRIKKKKRSEIEEKVKQALRFVNLEGYENRSIQEMSGGQRQRVAIARAIVNEPEVLLLDEPLSALDLKLRTEMQYELRELQRSLGITFIFVTHDQEEALAMSDQIFVLNKGKIQQSGTPKDIYDEPINRFVADFIGESNILRGTMIEDYLVEFAGKRFTCVDKGFRPNEPVDIVIRPEDLDITTKDQGKLQVRVDSLLFRGVHYELCCYDEDGNEWLVHSTKKAEVGEEIGLYFDPEDIHVMRISEDDGERSDEK
>NC_012793.1|WP_012749068.1|374498_375290_+|ABC-transporter-permease
MKNSVRNVYLFPYVIWIGLFVVAPILLILYYSFFDIDGNWTFANYKTFFTPIYLKMAASSVWYAFLITLFSLLVAYPTAYLLTKTKHKQLWLLLIILPTWVNLLLKVYAFLGIFGTYGLANAILETVGIGKKQILFTDFSFVFVSVYIFIPFMILPIFNSLEELNPTLVDAARDLGASAWTTFRRVVFPLTLDGVKAGCQAVFIPSLSLFMITRLVAGNRVITLGTAIEQHFLVTQNWGMGSTIAVFLIIAMAIVVIATGNRK
>NC_012793.1|WP_012749069.1|375300_376107_+|ABC-transporter-permease
MRGNKKWANAYLVFVFLILYAPIIYLIYYSFNSGGTMHNFEGFTLEWYKEVIGDTRLWIIVLNTLTIALLSAAISTILGVMGALAIYYVKKRQIKQLLLTLNNVLIVSPDVIIGASFLILFTIIGIQLGFTSVLLSHIAFSVPIVVLMVLPKLQEMSPTLIDAARDLGANQWDVLTKVILPFITPGIFAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLFLFTVVLVIGYYFISQKSSSLYGMRGRRK
>NC_012793.1|WP_012749070.1|376103_377177_+|ABC-transporter-substrate-binding-protein
MRKLISLFAAVFFASFVLLYVSSQLNKAEGYSGENTLTVYNWGDYIDPELIKKFEKQTGIKVIYQTFDSNEAMMAKIAQGGTTFDVAVPSEYAISKMKEDGLLIPLDHSKLPNLKYINPRFLNLSFDPGNKYSVPYFWGTVGIVYNPEMLGGKKITSWNDLWDKDLRNQILLVDGAREVIGMGLNSLHYSLNDTNKKHLQEAKEKLDRLTPNVKAIVGDEIKMLLVNEEAAIGVVWSGDAAGIIAENDKLDYVVPKEGSNLWFDNMVIPKTAKNIEGAHQFINFMLDPKNAAQNAEYVGYSTPNEKALDYLPKEVTEDKRFYPDFESVGNLEVYENLGKRMLAYYNELFLQFKMHRK
>NC_012793.1|WP_012749072.1|377528_378776_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MYFCIKQQLNGLTKEEYLTLRELCHIAKNMYNVGLYNVRQYYFEHKEFLNYEKNYHLAKTNENYKLLNSNMAQQILKKVNEAFKSFFGLVKLAKQGKYDYKAISIPKYLKKDGFHSLIIGQIRIDGNKFTIPYSRLFKKTHKPITITIPPVLLDKKIKQIEIIPKHHARFFEIQYKYEMPEDQRELNDQKALAIDLGVNNLATCVTSDGRSFIIDGRRLKSINQWFNKENARLQSIKDKQKIKGTTRKQALLAMNRNNKVNDYINKTCRYIINYCIENQIGKLVIGYAETWQRNMNLGKKTNQNFVNIPLGNIKEKLEYLCKFYGIKFFKQEESYTSKASFFDGDEIPEYNADNPKEYKFSGKRIKRGLYRTKSGKLINADVNGALNILKKSKAVDLSVLCSSGEVDTPQRIRIA
>NC_012793.1|WP_012748853.1|380062_381250_-|IS701-family-transposase
MNRLAHHQGIHKFFFTLGLTLQLSKPVIKHLIHIVDALTTKGFSGTLTDIHYWSFHPNHRTTLSHFFTKSPWNEERLLGKLQEWILSQVERLAKRKNQPLFVSIDDTICQKTKPSSRAVHAIQGCDWHYSHKDHQSVWGHSLVWLMVHTFTQAFPFAFRLYDKKAGKSKIDLAIEMLSSLKVKRAQPVYVLMDSWYPSKKLIEACLKQGFHVIAMLKTNRILYPKGIAIQAKQFARYIESKDTRLVTVGQERYRVYRYEGAIHGLDDAVVLLAWKADQPMAPEHLHCILSTDRELGDEDILRYYAQRWTIECFFRQAKDQLKLDGYRVRHIRAVKRYWAVVLLACVYSIAESRQNLSTGLELLRSRKDHSVVEFIYDAAKQDIPIDVIKKQLRIA
>NC_012793.1|WP_012749074.1|381668_382835_+|IS256-family-transposase
MSKSISNIDWANQLENVIRQFVKEKLELIMREEIKNFLEIEQAGTSNMRNGYYQRNLDTQYGRIEGLLVPRDRNGEFQTQLFAPYQRHTGWLEEAIIRMYQSGMSTREIGKFIERILGNAYSPATISRITDVVKEDIEKWHHRPLSKRYSVLYLDGLYVKLRRDTVEKEVIYVVLGVNEEGYREILDFFVGGQESAYGWREILQQLYKRGVKEVLLGVFDGLPGLEEAFKAVYPKADVQRCVVHKVRNTLSRVRKKDQFEVAEDLKLIYRAPNKEMALQMFQQFESKWSSKYPREVQSWANELDVLLTFMDYPSSIRSVIYTTNAIERTIKEIRKRLKPMNSLNSLEAAEKIVYLTIQDFNEKWAGRKLRGFAEAQEALQRMFEERYN
>NC_012793.1|WP_041269563.1|383054_383612_+|hypothetical-protein
MFGYPLETVYLGVLIVSGSLTLLYILLSDMIDGIFEMPDHPWFSPQLILSFFTVGSASGFLFERYTGMSSALIVLISAGIAVIVVLLLHFFVFIPLRSAETSLNYSETDLEGSLAKVIVTVPSDGFGEILLQWKSGAISKPAKSMDNEEIASGTEVIIVKMENGVAVVAKHDPYYISSLHKGGYA
>NC_012793.1|WP_012749076.1|383611_385135_+|flotillin-family-protein
MTPMLIVIGVVVLLLIGLVAIFMLRYRTVGPDEALIVTGSYLGSKNVHVDESGNKIKIVRGGGTFVLPIFQQAEPLSLLSIKLDVQTPEVYTEQGVPVMADGVAIIKVGSSIGEIATAAEQFLGKTRQDMENEAKEVLEGHLRSILGSMTVEEIYKNRDKFSQEVQRVASQDLAKMGLVIVSFTIKDVRDKNGYLDALGKPRIAQVKRDADIATAEAEKETRIKRAEADKEARKAELERLTEIAEAEKINQLKLAEFRREQDIAKARADQAYHLEEAKAKQEVTEQQMQIKIIERQKQIELEEKEILRRERQYDSEVKKKADAERYAIEQAAAAEKAKLMAEADAQKYRVEAMAKAEAERIRLDGLAKAEAEKAKGEAEAEIIRLKGLAEAEAKQKIAEAFERYGQAAILDMIIKMLPEYAKQVASPLANIDKITIVDTGSNSTNGGANRITGYATNLMASLQETLKASTGIDVKQLLENFAAKGNVEPPSIQASEDAVEQRKTAGQ

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Crispr_ID: NC_012793_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012793_4

372878-373162

TypeIII

Consensus_repeat	Method
GTTTTTATCTTACCTATGAGGAATTGAAA	PILER-CR
GTTTTTATCTTACCTATGAGGAATTGAAAT	CRISPRCasFinder
GTTTTTATCTTACCTATGAGNAATNNAAA	CRT

4 spacers

cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,csm6,cas6,cas14k

The CRISPR arrays of NC_012793_4

>merge|NC_012793|4|372878-373162|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTACCTATGAGGAATTGAAACCAATACACCAGAAGGATATCGCCTAGTCGATCAATGTTTTTATCTTACCTATGAGGAATTGAAATATGATCGCGTCGTATAACTCATTTGCTAACTTCAAATAGGTTTTTATCTTACCTATAAGGAATTGAAATCGCGGTATACAACGCCAAAATCTTTCTCATTCATCCCTGTTTTTATCTTACCTATGAGAAATGAAAACCAAGCTAAAAAAGGTTCTATTATTGTTTTTATCGTAATTATGAAATTGAACCA

>NC_012793|4|4|372878-373040|PILER-CR
GTTTTTATCTTACCTATGAGGAATTGAAA	CCAATACACCAGAAGGATATCGCCTAGTCGATCAAT
GTTTTTATCTTACCTATGAGGAATTGAAA	TATGATCGCGTCGTATAACTCATTTGCTAACTTCAAATAG
GTTTTTATCTTACCTATAAGGAATTGAAA

>NC_012793|4|4|372878-373109|CRISPRCasFinder
GTTTTTATCTTACCTATGAGGAATTGAAAC	CAATACACCAGAAGGATATCGCCTAGTCGATCAAT
GTTTTTATCTTACCTATGAGGAATTGAAAT	ATGATCGCGTCGTATAACTCATTTGCTAACTTCAAATAG
GTTTTTATCTTACCTATAAGGAATTGAAAT	CGCGGTATACAACGCCAAAATCTTTCTCATTCATCCCT
GTTTTTATCTTACCTATGAGAAATGAAAAC

>NC_012793|4|4|372878-373162|CRT
GTTTTTATCTTACCTATGAGGAATTGAAA	CCAATACACCAGAAGGATATCGCCTAGTCGATCAAT
GTTTTTATCTTACCTATGAGGAATTGAAA	TATGATCGCGTCGTATAACTCATTTGCTAACTTCAAATAG
GTTTTTATCTTACCTATAAGGAATTGAAA	TCGCGGTATACAACGCCAAAATCTTTCTCATTCATCCCT
GTTTTTATCTTACCTATGAGAAATGAAAA	CCAAGCTAAAAAAGGTTCTATTATT
GTTTTTATCGTAATTATGAAATTGAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012793.1\|WP_012749074.1\|381668_382835_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|225865
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_012793.1\|WP_012749065.1\|371794_372328_+\|hypothetical-protein	unknown	unknown	unknown
NC_012793.1\|WP_012749068.1\|374498_375290_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	gnl\|CDD\|187788
NC_012793.1\|WP_012749067.1\|373435_374509_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_012793.1\|WP_012749077.1\|385256_386183_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982
NC_012793.1\|WP_012749069.1\|375300_376107_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_012793.1\|WP_012749076.1\|383611_385135_+\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|225177
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NC_012793.1\|WP_012748853.1\|380062_381250_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|379252
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_012793.1\|WP_012749070.1\|376103_377177_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270381
NC_012793.1\|WP_041269563.1\|383054_383612_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376684
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NC_012793.1\|WP_012749072.1\|377528_378776_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14k	-	gnl\|CDD\|366606

Protein	Function_ID	Function_description	E-value
NC_012793.1\|WP_012749074.1\|381668_382835_+\|IS256-family-transposase	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.41538e-99
NC_012793.1\|WP_012749063.1\|368837_369221_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.79737e-38
NC_012793.1\|WP_012749061.1\|366813_367941_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.0472e-54
NC_012793.1\|WP_012749068.1\|374498_375290_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.26036e-78
NC_012793.1\|WP_012749059.1\|364268_365174_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|187788	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	5.92007e-12
NC_012793.1\|WP_012749067.1\|373435_374509_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.85174e-169
NC_012793.1\|WP_012749077.1\|385256_386183_+\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
NC_012793.1\|WP_012749069.1\|375300_376107_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.34938e-79
NC_012793.1\|WP_012749058.1\|362929_364243_+\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	5.8753e-70
NC_012793.1\|WP_012749076.1\|383611_385135_+\|flotillin-family-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	5.40975e-108
NC_012793.1\|WP_012749062.1\|367940_368819_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.23397e-75
NC_012793.1\|WP_012748853.1\|380062_381250_-\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.93942e-11
NC_012793.1\|WP_012749056.1\|358004_358754_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.31058e-34
NC_012793.1\|WP_012749060.1\|365170_366817_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	5.41789e-101
NC_012793.1\|WP_012749070.1\|376103_377177_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270381	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.17083e-152
NC_012793.1\|WP_041269563.1\|383054_383612_+\|hypothetical-protein	gnl\|CDD\|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	3.10497e-05
NC_012793.1\|WP_012749057.1\|361724_362924_+\|CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.31951e-11
NC_012793.1\|WP_012749064.1\|369241_370381_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.56259e-38
NC_012793.1\|WP_012749072.1\|377528_378776_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|366606	pfam01385, OrfB_IS605, Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.	5.46e-40

>NC_012793.1|WP_012749065.1|371794_372328_+|hypothetical-protein
MKKRMSFSVLAVLLFFASSFSFSSNVKAAERKVSNNPSQEQILEMAAELEYIFTEIIIENDKTGKYFVNEEELKNSSYNQEEKEAIKFFAEYLNQEKNGISNLSKKSDVSTMSAKSTVKKCLQEALGIGNDIINEFMGYVEKKQWIAAAGILAVAGIAVQPVTVFIFAMTCGAGSAS
>NC_012793.1|WP_012749064.1|369241_370381_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MLLHPKDTQKVVRQANKQHIAHLAYHIHYLLPYKREQRKGRQEYLLEDKMRLSAVTVHPDLKTVANTVSQQREQAFVNLAKTYHVKKLKAKPIGKIIHGLGAGHVRETSLTIHPVYGIPYIPASSIKGVIRHWFIQAYCDGKEEKLPSNEKGVLVFGTQQQRGIVQFHDIFLINGLQITPDVLTVHMKDYYGKKGAATDTQSPNPVKFLTVTVSDVDIYVTGDAVHPKIGDTSALMEEVTVWTIRALTELGIGSKTSSGYGYFTDCEDVTETQFLPQVKKAKEQQQQQALLERKKEEEKRLTEMTPEDRLVYQIESLTDSPQDQEISKGKLYQEVLKAKSKKAAQALQAYWHRIGQWNVKSSKKKQYEKVQAIRTLLES
>NC_012793.1|WP_012749063.1|368837_369221_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MREKVQRVGIENGRASFAFQEVKKAKEKDSVNFESYRSYVKKMPSLIQVNGLGQALAFCYQKRKEYEEIYRSIHAWLKQRFSSFFQDDEKELVEVVINLPSADYRAVTMEVLALLNWMCKFAEGMAK
>NC_012793.1|WP_012749062.1|367940_368819_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYSIVRPFFLHVVTSVHAGSGSEIGLVDLPIQREKHTGFPKIESSSLKGALRYHIAQSLNEGEKKRFELVFGSEKGEENNTQSSAIALSDARVLLFPVKSMRGVFAWITCPYVLERFNNEVTLHQYDIELLPVPAPNTVSSNQLLVIEDKVVLEEYTFKATVSEDAQQLAERLTQMVAEDLQLSVNERLVVLTNDDFSDFVKLSTEVNARIKINPDTGTVDTGALWYEENVPPETIFYSFLYIGNVRGEGVEGLREAKEVEAFLLKENRFPKVFQLGGNSTLGRGMLRTIWL
>NC_012793.1|WP_012749061.1|366813_367941_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MTKLTLTPVDTFFFKNHHVTEAGEDTVMESMFPPRPNTIYGALRAAYIHAHTTFDKFIRETDEHVKRWMGTPNQRGEFQLQYCALTYKQDILLPLPLDYQVIEEKNSLKAYPLLLTEDKKPSSLQGKWRLASTRREKTKSSQHQYVSLHEWKHAILHEAPISSLISLSKLVVREEKVGIRLDIGRRTAQKGFLYRVTQGRFRDDGALAVYIRNGPDFSKVKFARIGGENRPWIIQQSEETFTLWNDKEKKQLAEKIEQTKVAKIIFLSPAIFEKGSRPRDFDGEKVTLPNGVTVKWLTAAIGRPELYGGWDIVRHRPKPRKWMVPAGSVIYVEVEEGDISKLLSVANGMHFTDEGAEEGFGFAVITSASKSEEEL
>NC_012793.1|WP_012749060.1|365170_366817_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSERQLVIFTVGPVQSFIASARKTEDFWSGSYILSYLVREAMKTLYQADPHCEIVYPLVSKEELENPSSRRLHIASIPNRFTAVVEGEAEKAKAILQETEQSVRNVFYDFCFQAIDNVFPFLLDHEKEKLKTTTEAQIRSFLEIYWVAEPYDETASFKQIRERAERRLGALKNEKRYESVPQHGLVCTVCKEREALCLEDIDEFDRYGTMKQKLERTWERCAGIYKEPEENSEQEQYVGRIKNNEFLCGICLGKRVARDYFTPIFKAAGTKFRTFPSVMEIGSGKYYAIVMMDGDNMGKWFSGENKEDYSRISQKLAHFSQEVVPNIVETDYHGRLVYAGGDDVLAFVPVDEALKIAKELRFAFSDEKKGLGKGATASVGLIVAHKKAPLQLVLNEVRRLEQKAKSYYSETTRQQKDALAIAVHTHSGEISEAVLPWTVEQEKITDELHQFLSLLKESLSPTFIHHFTQAFYPLLHEEHHLKWENKEMVRTELRRLLKRSVKEGAKIDNLDSHVETLMKLHDIVPSGYDFLYLLKILTFFNRKEGTEK
>NC_012793.1|WP_012749059.1|364268_365174_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MVDNERLKVSAIVETTYKLKLITPMAMHGANAKEKAEFRISSLRGVWRYWWRTLQEEKNHAALLEQEEEWFGGTQVKKQKSPVSLLLPRPLSGSKVESVLPHRTKSSFAVKTIPAGQETAVIMRALRKHEQLLETYELYFQYMLHLAGMGQRARRGFGAVQWEGHRWKTVADFAASLQDVLIRLGQSERFQFADSGCIVKLKGEVHTYHPVLSAVWVGEGQKTPQEVLKRFGEASHRANRYGRLGAVRPKRFASPLWCTVRKIGDLYYPIITEVEADSSVYKQPQYQRDRDSFLEIVGVRI
>NC_012793.1|WP_012749058.1|362929_364243_+|TIGR02221-family-CRISPR-associated-protein
MARNVLLSFLGRNDYEYCFYTYRGQRSSYTRFVQTAIYELFRNEEPMDVIIFATKEAKESNWNDKVRDGQQVEGIKTAFQRIAPEANVKLVEMESGQDESANWKLFDSIIAEIGEGDTIYFDITHSFRSIPFVALIVLNYARLVKKATIGTLAYGWFEKLGRPNEVKQLSPEQRLVPIVDLTNMAELLDWTNGVDQFLRTGDASLIKELTARENRKVFCDANASPLLKREVAELNKLAKQLDQTEKSIRTCRSLQVEEEVEKFRYQLEQVRHSQAEAIKPLVPILDEMEKKYSNFGGNTIINGWEVARWCVDNGLIQSALTMLSENVVTAICYAFQLEVTNVMIRDDLHSVIRIIIRKTKKEEWKVHNVSFVEEMVEKLLPYRELLKPFGEVAELRNDMNHAGVRANPFTADRFAQRVKTVLNAIKPFFEEMAALSQ
>NC_012793.1|WP_012749057.1|361724_362924_+|CRISPR-associated-protein
MYQHIVITCGISLLTGRANVFSINRDETMAEIRPLLDVKEIDEEIEKKVERWLQYAKQFAHEVAHRPNHVSAEYSTVHELRKKGKLAERPTIVLFVTQTVGGRIVESILTSLLETHFQANVRVIYIDIDVKNPKRMHETLGEYMSKLSYALSKGEPTSTCFAPIGGYKVMTSLGYIVGAFLNYPTAYLHEDHQVLHEIPPVPIHIKEEFVYEHLDLLRKCQKDAVPVQELSYQEKQCVKQYPSLFYQEDGFVCLSAFGEFLLEHEKYRHLFDTAYFVSKQIVDVIKHNRHQSLFIFQQLHELVKKLKYKEGNMFDLQHEKEFKTIRQEQVKYHLYKGASNGQTAFRLAYRYDEREDRLYANYLWLDHDRYKREASQGRGLYEDWSEFLDITNDLMTVVK
>NC_012793.1|WP_012749056.1|358004_358754_+|CRISPR-associated-endoribonuclease-Cas6
MRLTIVMSGRDNPVTLPLHYQQQLQGLLYHSLRNPKFSQFLHEVGFRKEKRSFKLFTFSRLYGPHQLNFERKTITFYEEFYWHVGTVLPELTQELGEYLLLHPDVQIGGQPVEVQRIDVEKRDIEGEEIEIEMLSPLTVYSTYETVDGSKKTQFFSPYDEVFSHLVELNFRNKYEAYYGVPPKERLFIEPIRVTEKHKVVTIFKGFYITAWLGHYRLRSSPGNLTFLYRVGIGGRNSQGFGMFRLLSER
>NC_012793.1|WP_012749067.1|373435_374509_+|ABC-transporter-ATP-binding-protein
MEKEAIIRFERVTKEYDGLVVLDDVSFEIERGKFYTLLGPSGCGKTTILRLIAGFTEPTEGTIYFHGKPVNHVPANKRQVNTVFQDYALFPHLNVFENVAFGLRIKKKKRSEIEEKVKQALRFVNLEGYENRSIQEMSGGQRQRVAIARAIVNEPEVLLLDEPLSALDLKLRTEMQYELRELQRSLGITFIFVTHDQEEALAMSDQIFVLNKGKIQQSGTPKDIYDEPINRFVADFIGESNILRGTMIEDYLVEFAGKRFTCVDKGFRPNEPVDIVIRPEDLDITTKDQGKLQVRVDSLLFRGVHYELCCYDEDGNEWLVHSTKKAEVGEEIGLYFDPEDIHVMRISEDDGERSDEK
>NC_012793.1|WP_012749068.1|374498_375290_+|ABC-transporter-permease
MKNSVRNVYLFPYVIWIGLFVVAPILLILYYSFFDIDGNWTFANYKTFFTPIYLKMAASSVWYAFLITLFSLLVAYPTAYLLTKTKHKQLWLLLIILPTWVNLLLKVYAFLGIFGTYGLANAILETVGIGKKQILFTDFSFVFVSVYIFIPFMILPIFNSLEELNPTLVDAARDLGASAWTTFRRVVFPLTLDGVKAGCQAVFIPSLSLFMITRLVAGNRVITLGTAIEQHFLVTQNWGMGSTIAVFLIIAMAIVVIATGNRK
>NC_012793.1|WP_012749069.1|375300_376107_+|ABC-transporter-permease
MRGNKKWANAYLVFVFLILYAPIIYLIYYSFNSGGTMHNFEGFTLEWYKEVIGDTRLWIIVLNTLTIALLSAAISTILGVMGALAIYYVKKRQIKQLLLTLNNVLIVSPDVIIGASFLILFTIIGIQLGFTSVLLSHIAFSVPIVVLMVLPKLQEMSPTLIDAARDLGANQWDVLTKVILPFITPGIFAGFFMALTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGISLSINALSTLLFLFTVVLVIGYYFISQKSSSLYGMRGRRK
>NC_012793.1|WP_012749070.1|376103_377177_+|ABC-transporter-substrate-binding-protein
MRKLISLFAAVFFASFVLLYVSSQLNKAEGYSGENTLTVYNWGDYIDPELIKKFEKQTGIKVIYQTFDSNEAMMAKIAQGGTTFDVAVPSEYAISKMKEDGLLIPLDHSKLPNLKYINPRFLNLSFDPGNKYSVPYFWGTVGIVYNPEMLGGKKITSWNDLWDKDLRNQILLVDGAREVIGMGLNSLHYSLNDTNKKHLQEAKEKLDRLTPNVKAIVGDEIKMLLVNEEAAIGVVWSGDAAGIIAENDKLDYVVPKEGSNLWFDNMVIPKTAKNIEGAHQFINFMLDPKNAAQNAEYVGYSTPNEKALDYLPKEVTEDKRFYPDFESVGNLEVYENLGKRMLAYYNELFLQFKMHRK
>NC_012793.1|WP_012749072.1|377528_378776_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MYFCIKQQLNGLTKEEYLTLRELCHIAKNMYNVGLYNVRQYYFEHKEFLNYEKNYHLAKTNENYKLLNSNMAQQILKKVNEAFKSFFGLVKLAKQGKYDYKAISIPKYLKKDGFHSLIIGQIRIDGNKFTIPYSRLFKKTHKPITITIPPVLLDKKIKQIEIIPKHHARFFEIQYKYEMPEDQRELNDQKALAIDLGVNNLATCVTSDGRSFIIDGRRLKSINQWFNKENARLQSIKDKQKIKGTTRKQALLAMNRNNKVNDYINKTCRYIINYCIENQIGKLVIGYAETWQRNMNLGKKTNQNFVNIPLGNIKEKLEYLCKFYGIKFFKQEESYTSKASFFDGDEIPEYNADNPKEYKFSGKRIKRGLYRTKSGKLINADVNGALNILKKSKAVDLSVLCSSGEVDTPQRIRIA
>NC_012793.1|WP_012748853.1|380062_381250_-|IS701-family-transposase
MNRLAHHQGIHKFFFTLGLTLQLSKPVIKHLIHIVDALTTKGFSGTLTDIHYWSFHPNHRTTLSHFFTKSPWNEERLLGKLQEWILSQVERLAKRKNQPLFVSIDDTICQKTKPSSRAVHAIQGCDWHYSHKDHQSVWGHSLVWLMVHTFTQAFPFAFRLYDKKAGKSKIDLAIEMLSSLKVKRAQPVYVLMDSWYPSKKLIEACLKQGFHVIAMLKTNRILYPKGIAIQAKQFARYIESKDTRLVTVGQERYRVYRYEGAIHGLDDAVVLLAWKADQPMAPEHLHCILSTDRELGDEDILRYYAQRWTIECFFRQAKDQLKLDGYRVRHIRAVKRYWAVVLLACVYSIAESRQNLSTGLELLRSRKDHSVVEFIYDAAKQDIPIDVIKKQLRIA
>NC_012793.1|WP_012749074.1|381668_382835_+|IS256-family-transposase
MSKSISNIDWANQLENVIRQFVKEKLELIMREEIKNFLEIEQAGTSNMRNGYYQRNLDTQYGRIEGLLVPRDRNGEFQTQLFAPYQRHTGWLEEAIIRMYQSGMSTREIGKFIERILGNAYSPATISRITDVVKEDIEKWHHRPLSKRYSVLYLDGLYVKLRRDTVEKEVIYVVLGVNEEGYREILDFFVGGQESAYGWREILQQLYKRGVKEVLLGVFDGLPGLEEAFKAVYPKADVQRCVVHKVRNTLSRVRKKDQFEVAEDLKLIYRAPNKEMALQMFQQFESKWSSKYPREVQSWANELDVLLTFMDYPSSIRSVIYTTNAIERTIKEIRKRLKPMNSLNSLEAAEKIVYLTIQDFNEKWAGRKLRGFAEAQEALQRMFEERYN
>NC_012793.1|WP_041269563.1|383054_383612_+|hypothetical-protein
MFGYPLETVYLGVLIVSGSLTLLYILLSDMIDGIFEMPDHPWFSPQLILSFFTVGSASGFLFERYTGMSSALIVLISAGIAVIVVLLLHFFVFIPLRSAETSLNYSETDLEGSLAKVIVTVPSDGFGEILLQWKSGAISKPAKSMDNEEIASGTEVIIVKMENGVAVVAKHDPYYISSLHKGGYA
>NC_012793.1|WP_012749076.1|383611_385135_+|flotillin-family-protein
MTPMLIVIGVVVLLLIGLVAIFMLRYRTVGPDEALIVTGSYLGSKNVHVDESGNKIKIVRGGGTFVLPIFQQAEPLSLLSIKLDVQTPEVYTEQGVPVMADGVAIIKVGSSIGEIATAAEQFLGKTRQDMENEAKEVLEGHLRSILGSMTVEEIYKNRDKFSQEVQRVASQDLAKMGLVIVSFTIKDVRDKNGYLDALGKPRIAQVKRDADIATAEAEKETRIKRAEADKEARKAELERLTEIAEAEKINQLKLAEFRREQDIAKARADQAYHLEEAKAKQEVTEQQMQIKIIERQKQIELEEKEILRRERQYDSEVKKKADAERYAIEQAAAAEKAKLMAEADAQKYRVEAMAKAEAERIRLDGLAKAEAEKAKGEAEAEIIRLKGLAEAEAKQKIAEAFERYGQAAILDMIIKMLPEYAKQVASPLANIDKITIVDTGSNSTNGGANRITGYATNLMASLQETLKASTGIDVKQLLENFAAKGNVEPPSIQASEDAVEQRKTAGQ
>NC_012793.1|WP_012749077.1|385256_386183_+|diacylglycerol-kinase
MKRARIIYNPTSGREIFKKHLPDVLVKLEKAGYETSCHATEGAGDATEAARKAVEREFDLVVAAGGDGTINEVVNGIADQDYRPKLGIIPVGTTNDFARAIGVPRSIERACDIIANGEAVPIDIGSVTNEGKTRYFINIAGGGRLTELTYEVPSKLKTMLGQLAYYLKGIEMLPSIKATEARIEYDGKMFEGEIMLFLVSLTNSVGGFEKLAPDSSLNDGMFDLIILKKTNLAEFIRLVTLAARGEHINDPHLIYTKANRIKVTSPNNMQLNLDGEYGGMLPGEFVNLYRHLEVFVSKEKAEQMRTGW

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Crispr_ID: NC_012793_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012793_5

899457-899571

TypeV-U1

Consensus_repeat	Method
CATTCATTAAACAAAAAAGATGAGAAGAATC	CRISPRCasFinder

1 spacers

c2c4_V-U1

The CRISPR arrays of NC_012793_5

>merge|NC_012793|5|899457-899571|CRISPRCasFinder
CATTCATTAAACAAAAAAGATGAGAAGAATCAGAAAAAAAATAAAGATAATGGTAATCAAAAGAGGGAACATCGGAGGAACAACCATTCATTAAACGAAAAAGATGAGAAGAATC

>NC_012793|5|5|899457-899571|CRISPRCasFinder
CATTCATTAAACAAAAAAGATGAGAAGAATC	AGAAAAAAAATAAAGATAATGGTAATCAAAAGAGGGAACATCGGAGGAACAAC
CATTCATTAAACGAAAAAGATGAGAAGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012793.1\|WP_012749506.1\|892025_893567_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|271374
NC_012793.1\|WP_012749511.1\|900017_900227_-\|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl\|CDD\|365990
NC_012793.1\|WP_012749522.1\|910109_911180_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235578
NC_012793.1\|WP_012749516.1\|901626_903399_-\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|379119
NC_012793.1\|WP_012749507.1\|893566_893908_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NC_012793.1\|WP_012749498.1\|894685_896149_+\|transposase	c2c4_V-U1	-	unknown
NC_012793.1\|WP_012749503.1\|888743_889913_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349939
NC_012793.1\|WP_012749523.1\|911202_912405_-\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561
NC_012793.1\|WP_012749504.1\|889887_890712_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225910
NC_012793.1\|WP_012749517.1\|903594_905829_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236901
NC_012793.1\|WP_012749502.1\|888125_888557_+\|threonine/serine-exporter	unknown	unknown	gnl\|CDD\|378960
NC_012793.1\|WP_012749508.1\|896393_897824_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_012793.1\|WP_012749505.1\|890728_891844_+\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|239433
NC_012793.1\|WP_012749521.1\|908977_910123_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NC_012793.1\|WP_012749512.1\|900723_901068_-\|DUF3905-domain-containing-protein	unknown	unknown	gnl\|CDD\|315671
NC_012793.1\|WP_012749520.1\|907433_908981_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_012793.1\|WP_012749509.1\|897990_898728_+\|RNA-polymerase-sigma-factor-SigI	unknown	unknown	gnl\|CDD\|236233
NC_012793.1\|WP_012749519.1\|906478_907489_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_012793.1\|WP_012749501.1\|887354_888107_+\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NC_012793.1\|WP_012749518.1\|905803_906301_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860

Protein	Function_ID	Function_description	E-value
NC_012793.1\|WP_012749506.1\|892025_893567_-\|cation-acetate-symporter	gnl\|CDD\|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NC_012793.1\|WP_012749511.1\|900017_900227_-\|alpha/beta-type-small-acid-soluble-spore-protein	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	1.31667e-21
NC_012793.1\|WP_012749522.1\|910109_911180_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|235578	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.	0
NC_012793.1\|WP_012749516.1\|901626_903399_-\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|379119	pfam13311, DUF4080, Protein of unknown function (DUF4080). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	3.25766e-53
NC_012793.1\|WP_012749507.1\|893566_893908_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	1.16336e-21
NC_012793.1\|WP_012749503.1\|888743_889913_+\|amidohydrolase	gnl\|CDD\|349939	cd08018, M20_Acy1_amhX-like, M20 Peptidase aminoacylase 1 amhX-like subfamily. Peptidase M20 family, uncharacterized subfamily of proteins predicted as putative amidohydrolases, including the amhX gene product from Bacillus subtilis. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NC_012793.1\|WP_012749523.1\|911202_912405_-\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0
NC_012793.1\|WP_012749504.1\|889887_890712_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225910	COG3375, COG3375, Uncharacterized conserved protein [Function unknown].	2.01974e-54
NC_012793.1\|WP_012749517.1\|903594_905829_+\|PAS-domain-S-box-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.75549e-76
NC_012793.1\|WP_012749502.1\|888125_888557_+\|threonine/serine-exporter	gnl\|CDD\|378960	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. ThrE_2 is a family of membrane proteins involved in the export of threonine and serine. L-threonine, L-serine are both substrates for the exporter. The exporter exhibits nine-ten predicted transmembrane-spanning helices with long charged C and N termini and an amphipathic helix present within the N-terminus. L-Threonine can be made by the amino acid-producing bacterium Corynebacterium glutamicum, but the potential for amino acid formation can be considerably improved by reducing its intracellular degradation into glycine and increasing its export by this exporter. Members of the family are found in Bacteria, Archaea, and the fungal kingdoms, and the family can exist either as a single long polypeptide chain or as two short polypeptides. All family members show an extended hydrophilic N-terminal domain with weak sequence similarity to portions of hydrolases (proteases, peptidases, and glycosidases); this suggests that since this region is cytoplasmic to the membrane it may be generating the transport substrate, so may imply that threonine may not be the primary substrate and the ThrE has a subsidiary function.	1.85615e-34
NC_012793.1\|WP_012749508.1\|896393_897824_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.6373e-161
NC_012793.1\|WP_012749505.1\|890728_891844_+\|o-succinylbenzoate-synthase	gnl\|CDD\|239433	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NC_012793.1\|WP_012749521.1\|908977_910123_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	2.93371e-129
NC_012793.1\|WP_012749512.1\|900723_901068_-\|DUF3905-domain-containing-protein	gnl\|CDD\|315671	pfam13045, DUF3905, Protein of unknown function (DUF3905). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length.	1.8314e-51
NC_012793.1\|WP_012749520.1\|907433_908981_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_012793.1\|WP_012749509.1\|897990_898728_+\|RNA-polymerase-sigma-factor-SigI	gnl\|CDD\|236233	PRK08311, PRK08311, RNA polymerase sigma factor SigI.	4.46642e-118
NC_012793.1\|WP_012749519.1\|906478_907489_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	7.3885e-79
NC_012793.1\|WP_012749501.1\|887354_888107_+\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	2.35497e-88
NC_012793.1\|WP_012749518.1\|905803_906301_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	2.18931e-58

>NC_012793.1|WP_012749509.1|897990_898728_+|RNA-polymerase-sigma-factor-SigI
MFSILFSLKKERTIEQTVHEIQQGNKVLHNQLIQQYKPFIAKTVSNVCKRFIHEGDDELSIGLIAFNEAIEKYAPHKGGSFISFAELLIKRRLIDYIRKEAKEKNIILHTNEDEENSAQTYLDTKLSMDEFYKQVEQEHRREEIIHYQQVLKEFGIHFHDLIEQSPKHKDARINAINVAKLLVEDEEMLEWLFRKKQLPIKQLQNIAEVSRKTIERNRKYIIAVAIILAGNYVYLKDYIKGVLPS
>NC_012793.1|WP_012749508.1|896393_897824_+|amino-acid-permease
MNLFRKKSIQMLLHEADRKGASLKKDLGAFDLTMLGIGAIIGTGIFVLTGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGELIAWILGWDLILEYGVASSAVAVGWSGYFQGLLSGFGIELPKALTNAYDPAKGTFIDLPAICIILFIIFLLNLGVKKSARFNAIMVVIKVAVVLLFLAVGVWYVKPENWSPFMPFGFSGVATGAATVFFAYIGFDAVSTAAEEVRNPQRNMPIGIIASLFICTLLYIAVSLVLTGIVPYDQLNVKNPVAFALSYINQDWVAGFISLGAIAGITTVLLVMLYGQTRLFYAISRDGLLPKVFSKVNPTRQVPYVNTWLTGIIVAFFAGVVPLNKLAELTNIGTLFAFITVSIGVLILRKTQPDLKRAFRVPLVPVIPLLAVAFCGYLVLQLPKTTWIGFVSWLLIGLVIYFVYGRKHSTLNNVKEATEEKIRIING
>NC_012793.1|WP_012749498.1|894685_896149_+|transposase
MAGAKTPSYVLTLRLQTESWQKHILEKRFEIGRCLYNACLEECLKRYKKLQHDSRYQDLAQQKPSKEKNRQLSDLRTEYGLSEYAMHAFVQPMQRHFRKHMDAHTAQKIATRAWKAVERFLFGAAKRVYFKRFGEMGSLEGKSNSAGIRFKSHAIHWNGLMIPVIIQPNDVYAHLALQDRIKYCRIVRKRIRGKVKYYAQLILEGVPPQKINRQTGKAKHPRGEGVVGIDIGTQTIAICAPNEVKLLELAPSVDDIHPEKRRLQRKLDRQRRANNPNKYNEDGTIQRGNKEKWVWSKNYIKTKNQLAELQRKLAEKRKQDHNKLANWILSLGNDIKVETMNYKALQARAKETTMNEKTGRYNRKKRFGKSIANKAPSMFLAILDRKLRYDGKTLKKIDTFSAKASQYNHITGEYVKKRLSERWNDMNGCKIQRDLYSAFLIMNAKDHLKEIDREKCFATWERFKRLHDKEVERLKNSGNKLLSSMGI
>NC_012793.1|WP_012749507.1|893566_893908_-|DUF485-domain-containing-protein
MAVQERSFENRSAIDYSQIAQSSSFQHLMRAKKNFILPATLFFFVFYFALPVLTSYSNVLNSSAIGPISWAWVFAFAQFIMTWALCMLYSKRAAKFDEIVEQMKQEAKEGGNL
>NC_012793.1|WP_012749506.1|892025_893567_-|cation-acetate-symporter
MHGLAFFLFLIIVALTLVITYFASKRTRTTSEFYTADSSLTGWQNGLAIAGDYMSAASFLGIAGMIALFGFDGFFYSIGFLVAYLVVLYIVAEPLRNLGKYTMADMIAARFDDKKVRGVAALNTISISIFYMIAQLVGAGGLIKLLLGIDYVYSVLIVGVLMTVYVVFGGMTATSWVQIVKAVLLMVGTFIISIIVFAKFDFNLIKMFNEVKTATPLGEAFLNPGNKFKDPLDTISLNLALILGTAGLPHILIRFFTVKDAPTARKSVVYATWIIGIFYVLTIFLGFGAAAFVGYDKIVAANPAGNMAAPLLAEVLGGDFLFAFVSAVAFATILAVVAGLVLSAASAFAHDFYSHILRRGEATEKEQMVAARWASVGVSVLSILLALFAQKMNVAFLVSLAFAVAASANLPIIVLTIFWRRFNTTGAIAGMLVGLFSALLLVFFSPNVWSPEPGAAILVGEPLFKLANPGIVSIPLGFIASIVGTLLSSKNADSKKFDEILVKANTGIKELAN
>NC_012793.1|WP_012749505.1|890728_891844_+|o-succinylbenzoate-synthase
MGIKVKRVILRHLQMELKSPFTTSFGSFQKKEFILVEAMDEDGLSGWGESVAFPSPWYNEETVKTNWHMIEDFLLPLLFQAPIAHPEELRQRFSVIRKNQMAKAAIEGAIWDLFAKRQQLPLHKALGGNKNRIEVGVSIGIQKSIDDLLRIIERYVQEGYRRIKIKIKPGWDVEVVREVRRRFPDVPLMVDANSAYSLEDIDRLKALDEFQLMMIEQPLAPDDIVDHATLQAQLNTPICLDESIHSAEDARKAIQLGSCRIINIKIGRVGGLAEAKRIHDICKENDIPVWCGGMLEAGVGRAHNIAITTLDNFTLPGDTAASSHYWTKDIIVPEVTVHHGTITVPEKPGIGYDVDRQQVDIYTSYAKMYHA
>NC_012793.1|WP_012749504.1|889887_890712_+|GNAT-family-N-acetyltransferase
MRISLQKIDTIEQLEEMAQLEAEVWGTSPIPTHQTLTVAKNGGIIIGAFIDGKMVGFVYSFPGYQDGETYLCSHMLGIAEPFRDQGIGYMLKMKQAQEAIKQGYRTIRWTYDPLQSRNGYLNIAKLGAICSQYIENCYGEMDDALNKHLPSDRFIVEWLLGSRYLQERDRFFSRLKWSPEKMVLDWKQNNTGDPEAIWKEEPIHHDQPFLLVPIPLQFQRLKETDHELALDWRYKTRDVFVRLFREGWAVAHILRKDDEPVLYYVCVKRNELPL
>NC_012793.1|WP_012749503.1|888743_889913_+|amidohydrolase
MREMIHAMKEELWEIFDHLHRHPEVSWEEWKTTEFIKQQLIQEGYRANTFSDCPGVIGEIGSGPFTVGLRSDMDALWQEVNGAWQANHACGHDAHMTMVLGVAKLFNRIGYKPPGTLRFLFQPAEEKGTGALKFLEKGVIDDIDFLYGVHLRPIQEVKSGYAVPAILHGAAQCIDGEIKGVAAHAARPHLGVNVIEVGSAIVQELSKIHIDPQVPASIKMTRFHAGEKNANIIPDHAEFSLDLRAQTNEAMEQLIEGLNHVVKGIASIYDADIQLHSGVRIAAARPHPQAQQLMERAIVATLGEEKCLPPVVTSGGEDFHFYSLMKPQLKTTMLGLGCDLKPGLHHPQMTFRREDLLSGIEILARVIMETFEHFASRGETESAYLTTKN
>NC_012793.1|WP_012749502.1|888125_888557_+|threonine/serine-exporter
MIIQHILTSFIASAAFGIIFNIPKKLLINSGFVGMVGWMIYFLFAEHQLNGVAATFIAAFFVAMISTIFARIYKTPVTIFSVSGIIPLVPGGLAFEAMRHVVFNDYSTAISLAAKAFMISGAIAMGLIFSEVINQLVKWKWKS
>NC_012793.1|WP_012749501.1|887354_888107_+|threonine/serine-exporter-family-protein
MPTYHDRTNDIVDLCLLAGKIMLESGGETYRVEDTMMRIAASFGIPRSHSYVTPTGIIFSIDRMNSTQFIRIVERSTDLQKVALVNNISRRISNGELSLDEAYTQLKEVEKQKFAYSLSQQVAAAAIASGCFAVMFGGWNNFFPSFLAGGAGFYCFEMIHRLVKIRFFAEFFASFISGGLALILVAIGLGANLDKIIIGSVMPLVPGLVITNAVRDLMAGHFLAGLSKGAEAFLTAFAIGTGIALILSIG
>NC_012793.1|WP_012749511.1|900017_900227_-|alpha/beta-type-small-acid-soluble-spore-protein
MARSSNKLLVPGIEQALDQIKYEIAQEFGVQLGANTVSRANGSVGGEITKRLVAQAQSQLSGSAFQKTE
>NC_012793.1|WP_012749512.1|900723_901068_-|DUF3905-domain-containing-protein
MDQDKKVESPILDETMPHQIHAPSFKGTGIKTQPPFVNKYGVVIGDSKYNSPNSPLNHWSDEIDPSIMAGDEWVHPTNDIGWNTEENRELLEAKRRSQRVPFMHPSIDTSYGQD
>NC_012793.1|WP_012749516.1|901626_903399_-|B12-binding-domain-containing-radical-SAM-protein
MNIICTTLNSKYIHTNLAIRYLKAYAQPEFDIKLVEYTIKDPAMNIVTDLYRRKPDIIGFSCYIWNIEETIKVVKMLKKIAPDITIVVGGPEVSYDVREWMETVPEFDFIVIGEGEETFKQFLMEMHGDRNFHNVHGLAFRHHGDIFINPQRNKIRLADMPSPFRFPEDIPHLPKRITYIETSRGCPFSCQFCLSSIEVGVRYFDREKIKEDIRYLMKHGARTIKFVDRTFNISRSYAMDMFQFLIDEHVPGTVFQFEITADIMRPEVIEFLNKEAPPGLFRFEIGVQSTNDEVNRLVMRKQNFEKLTRTVMMVKEGGKIAQHLDLIAGLPEEDYTSFRKTFNDVFALRPEELQLGFLKMLRGTGLRLRAKDYGYVFMDHAPYEVLQNNVLSFDDIIRIKQVEDVLEKYWNAHRMDETIEYLVTNVFPSPFDFFQEFGTYWDERGWAKIGHQLEDLFRRLHEFLQTKKLDELPIIEALMKYDYLRNQKHKPRKPWWEEKTDKSLRSSLYRQLLEHPEQLGNEFVSLELNEKKLFKHTVMEIIEFDIGHYLKTKEIRLTPTVMIAYFDPVQLQTKIFSAPLSSFSNAAIKK
>NC_012793.1|WP_012749517.1|903594_905829_+|PAS-domain-S-box-protein
MNNSLSPREEQSLVVDVKSLEEENRRLKERLNGYSIIFERSLDAIVIFNKNGEFVDVNEAACQLFEMEKYELIGKKMTMFLDLVPPDILMFQQSMLHKFGSFSDELLIKLRNGKVKHIEFSMKKDAFNEFDLVIMRDISAHKALERERIIHEFLFKDVFNRAVDSIVIFDEFGRFIDVNPAFCMSLNLEKEKLLKLSFQQFISKECADDFVRLLAELKEKGTAKGELSLVRFDGTVKMFELTTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQAHEAILIWDDQGHILNANHAASRTFELPLNLLVRKNLLDFLDHDDEKVQRVFAEFRIKGEIRDELTFHMPNGQDKQLEFTMKQGAIDGYHLTIFRNVTERRKMERELRESEQKFRSIFDHSMNGILLWGEGYHILDVNPIACEIFQATKEQLLHRPITAFIPEKARKHFYKLAQQCDRLGEAYAEMDFSNGGKQKIVEFSLKKEIIPGVGMIMLRDITERKEMELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSIKEDYSMYFNVIMSELKRIESIITEFLVLAKPQAIQFQQNDVCKIMQDTIDLISAQATMHNVQIVADFAPHVPFIYCEPNQLKQVFINILKNAIEVMPKGGEVTVRINRLDDSHIRISITDQGCGIPQDKIKKLGQPFYTTKERGTGLGLMVSYKIIEEHQGKIDVESEVDVGTTFHITLPIERVEKEDEHETGIQHI
>NC_012793.1|WP_012749518.1|905803_906301_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MKLEYSIYKSDLLGCIYVISNGEAIVSVELFEEDWQQLRQQYEMIKSNSPLLENAVQQLDEYFHGKRKAFHLPLKWKGTEFQEQVWQALCEIPYGTMVSYSDIAEKIGRPKAVRAVGQANRANELAIFVPCHRVVGKNGSLTGYAGNRTNVKERLLQLERRYRTI
>NC_012793.1|WP_012749519.1|906478_907489_-|ABC-transporter-permease
MAQPAVSIAKKKQAPSLLEFLYKHGTLLAILVVIAYFGITLDRFFTYENFSDILRSISIVTLVAIGITFSLIVDGFDLSVGSTVSLATIASAAALVLYRQEILVTLLAPLLLGVAVGLLNSLLIVKLKLPDLLATLATMYAINGVQLTYTKGFSIYNDMPLPDGGTAPGKFIPSFLFIGQGEVFGIPFSVLLMLVVVIAAHLFLTYTKPGRLFYMTGENREAARLSGIPVNRYRTYAYVISGFFAALGGIVLASRIGTGQVSAGASFLMDGVAAAYIGFSVFGAGKPNVIGTLFGSILMGVLLNGLTMMNVPYYAQDIIKGAILVGALALSHMQKK
>NC_012793.1|WP_012749520.1|907433_908981_-|sugar-ABC-transporter-ATP-binding-protein
MNGLYMNNIYKSFGTVNVLNGVNLHVQKGEVHALLGMNGAGKSTLMKILAGALFPDKGTITIDGEERRFSSPADAKKAGIGLVVQEVDTALFPSLTVYENIAASDIVDTKQKPLLSWKQQKHRAAKLLRQVGLSISPNKLIRECTLHEKQLIVLAKVLSSSARYIILDEPTAALSETETKRLFTIINDLKAQGVSFIYISHKLKEVKEICDRVTILRDGNVVHHGDVSTLSLEEMIQHMVGRVYTTVQKEARTYSDDILFKVEQLRIAKTGTTVDLEIHKGEIVGIAGLAGAGKTELAESLIAHTKATGEWWIDGKRYTFSSPKEAIAAGICLIPEERRKQGLFLDETVRTNLTVRLLSSLTKWQWVLQKKETQVAQHLVDVLRIHPPFPQAVVKQLSGGNQQKVVIGKWLKTNADVFIFDEPTKGIDVNAKQEVFSIIRSLADEGKAILYLTSEFQELLDIADTIYIMVDGQLVKRVSARDITYEQLIYYCSGGDLDGTAGRFDRQEKASAISS
>NC_012793.1|WP_012749521.1|908977_910123_-|sugar-ABC-transporter-substrate-binding-protein
MKQFRLNYLVAFLFSIIVILSGCMNEQDAVSSKPAKQENSTAEEASETTAATTEQADIPEELKKPIKIAAIMQMSIGTFSSQYIAGVKEQVQKFGGEVQIYNADNDLTKMASYVETAITQNVDAILLDHGRADALEGPVKKAVEKGIPVVAFDNDLNIPGVTVIDQDDYSLAWKTLKTLAEDLNGEGNIVTIWVGGFTPMERRHVIYDAFKKRYPNIKEVAKFGTASANTALDTQTQMEAILKKYPNKGDIDAVFATWDEFAKGATRAIEQAGRNEIKVYGIDLSDEDLQMMQKPNSPWVATTATDPAEVGRVQVRFAYQKIAGEKTPNIYSLEPHLVKRSDLPNQQVSMNELHQYISGWGQSNVAISPRMKTLEAQVKNK
>NC_012793.1|WP_012749522.1|910109_911180_-|S-methyl-5-thioribose-1-phosphate-isomerase
MAEPFAIPRSVEWNDTHITILNQQKLPLVTEYLELKNIEDVWDAIAALKVRGAPAIGITAAYGLALSAQQYETESLEKFKEHVRKDRDYLASSRPTAVNLFWALDRLVSSIAHVSSVNEAKTTLIHEAIRIQIEDEDVCRRIGEHALSLFQNGDRVLTICNAGSIATARYGTALAPFYLAKEKGMNLHVYASETRPVLQGARLTTWELMQAGVDVTLITDNMAAQTIKAKNITAVIVGADRIAANGDTANKIGTFGLALLAKAFGIPFYVAAPLSTIDLATKTGEEIPIEERNPEEVTHIAGTRIAPEGVNVYNPAFDVTPHDLITAIITEKGIVRGNYETELPALFAKEARHEAI
>NC_012793.1|WP_012749523.1|911202_912405_-|S-methyl-5-thioribose-kinase
MPVSHPTVYEPLTEQGAISLAVRLGLFPEGTPLACREIGDGNLNLVFRVVDQQTKKGIIVKQALPYAKVVGESWPLTLKRAVIESNALRTFASYVPQYVPKVYYSDESLAITVMEDLSHLQIARKGLIEGKTYPLLSQHIGEFIAKTSFYTSDFGMNQQEKKQLAQSFVNPELCKITEDLVFTDPFFNHETNNFEDELRDDVEALWNDDKLHLEAAKLKRKFLTEGDALIHGDLHTGSIFASDEETKIIDPEFAFYGPFGFDIGQFFANLLLNALSRPEQQQEPLFAHIDKTWDVFSTVFSDLWRTHNVEPYAKTEGLLEDVLHHTFIDAIGFAGCEVIRRTIGLAHVADLDGIEDKEERLQAKRYALRLGRSLILQRETLSSTKEIRSLFAQTVLAATN

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Crispr_ID: NC_012793_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012793_6

2059339-2062031

Unclear

I-A

Consensus_repeat	Method
CTTTATATCCCACTACGTTCAGATAAAAC	CRISPRCasFinder
CTTTATATCCCACTACGTTCAGATAAAAC	CRT
CTTTATATCCCACTACGTTCAGATAAAAC	PILER-CR

41 spacers

cas2,cas4,cas3,cas5,cas7,cas6

The CRISPR arrays of NC_012793_6

>merge|NC_012793|6|2059339-2062031|CRISPRCasFinder,CRT,PILER-CR
ATCCCTATCCCACTACGTTCAAATAAAACCTGTTTGGCTTGTTCTTTCTCGTATATGCTTTATATCCCACTACGTTCAGATAAAACAAATCAGTTCTTCATTAAATGACTATTTAAGAAAACACCTTTATATCCCACTACGTTCAGATAAAACTCGCTTATTCCAGTTTATTATTTCAATTCCAACTGCTTTATATCCCACTACGTTCAGATAAAACAGAGTCCACAAAGTCGGGTTTCTCATCTATGATCAATCTTTATATCCCACTACGTTCAGATAAAACGTTTTTATGTTGGTTATTGTTTATTGTTTTTATATCTTTATATCCCACTACGTTCAGATAAAACTGACATTGATTTAGGTAAAGATGTTGCAAAAGTGTTTAGCTTTATATCCCACTACGTTCAGATAAAACACATAGTTCACGAAGATATGTGGAGCTATGGAGATACTTTATATCCCACTACGTTCAGATAAAACCAACAGACGGAGCCGGATCAATTCCAGGCGCAGCCAACTTTATATCCCACTACGTTCAGATAAAACCCTTTTCCATGCGATCATTCATGGCAAGCCGATAGCATCTTTATATCCCACTACGTTCAGATAAAACGGGAACAAGTTTGTTGTGAATCTCATTCATGCGACTTTATATCCCACTACGTTCAGATAAAACGCGTGGGTGTGTCGAAGGTCATGGAATCGGATTTTCTTTATATCCCACTACGTTCAGATAAAACACAGGCGTGCTTTGCGGTATCTCGGTCAAGATCAACTTTATATCCCACTACGTTCAGATAAAACAAGACGGAAGCGCATCAATCGGCAAATTAGCCTTCCTCTTTATATCCCACTACGTTCAGATAAAACGGGATGTTCTCATTGCAAAAGATTTTGATGATAACCAACTTTATATCCCACTACGTTCAGATAAAACGCCAAGCTCTTTCATCCGTTCAGCAATGTTCAATACATCTTTATATCCCACTACGTTCAGATAAAACAAGCATCCTTTCTGAAATTGCCCGTATCGGTGGAGCTTCTTTATATCCCACTACGTTCAGATAAAACTAATTTACCCATCTACCAATCTCTTTATCAAAAATCTTTATATCCCACTACGTTCAGATAAAACAAAAACGATTCTTCTACCGCCTTTTCATTCACCATCTTTATATCCCACTACGTTCAGATAAAACTTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCATCTTTATATCCCACTACGTTCAGATAAAACACGATTTGTCCCAAATGACGATGGAGATATAGAGGCTTTATATCCCACTACGTTCAGATAAAACAAAAACGATTCTTCTACCGCCTTTTCATTCACCATCTTTATATCCCACTACGTTCAGATAAAACTTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCATCTTTATATCCCACTACGTTCAGATAAAACACGATTTGTCCCAAATGACGATGGAGATATAGAGGCTTTATATCCCACTACGTTCAGATAAAACAGAATGTTTGTAGGATTGGATTTTCCGCCTTTATATACTTTATATCCCACTACGTTCAGATAAAACGGGAAGTCGTATCATGCTCTTGAATTAGGTTTGCAGCTTTATATCCCACTACGTTCAGATAAAACGGGTAGATCAAGATTAGATATTTTGGATGTGAAAGAACTTTATATCCCACTACGTTCAGATAAAACCGGCGCCGATTCCGATTGGGAATCCTGCGTTTGAGCTTTATATCCCACTACGTTCAGATAAAACACTTTTCACGGCTATCTCGTGTCCGACGCTTCGCCTTTATATCCCACTACGTTCAGATAAAACGATTTCACGGATGAAGAGACTGGACAACGGAAGACCTTTATATCCCACTACGTTCAGATAAAACGTTCCTGCTGTTTGGAACAATTTCTCTTTTTTAGGCTTTATATCCCACTACGTTCAGATAAAACTTTCATGAAGAAATGAAACGGCTAAAGAATTTGAACTTTATATCCCACTACGTTCAGATAAAACGTTTCTGCTGCGAAAAAGGCTGGTATCGTTTTTGACTTTATATCCCACTACGTTCAGATAAAACTGAGGGAACAGAAGATTTTATTCACTTTGGATAAATCTTTATATCCCACTACGTTCAGATAAAACCGCCGATTTCTGAAACGTTTGCCTCATATGCGATCTGCTTTATATCCCACTACGTTCAGATAAAACTCTCCAGCAATCAGACTAGCAATTCGCCGCGCATGTCTTTATATCCCACTACGTTCAGATAAAACATTTTGGTATAAGGTCGATTCTGAATCGGGTTACGATCTTTATATCCCACTACGTTCAGATAAAACTGATCCTCAAAGTGTTATTGCCTGGCGACACCACCTTTATATCCCACTACGTTCAGATAAAACCGGGCAGACGGGGTGAGCTTGGTCAATATCCTGTCAACTTTATATCCCACTACGTTCAGATAAAACTTATCTCGAATAGCCTGTTTATTAGATTCAAACACCTTTATATCCCACTACGTTCAGATAAAACGAATCTAGGCTATTTCTTAACTTATAAATTATCTCTTTATATCCCACTACGTTCAGATAAAACTAAAAGTTCAAACTTTACATCTTACAGTAAATTTGATTTCTTTATATCCCACTACGTTCAGATAAAAC

>NC_012793|6|6|2059339-2062031|CRISPRCasFinder
ATCCCTATCCCACTACGTTCAAATAAAAC	CTGTTTGGCTTGTTCTTTCTCGTATATG
CTTTATATCCCACTACGTTCAGATAAAAC	AAATCAGTTCTTCATTAAATGACTATTTAAGAAAACAC
CTTTATATCCCACTACGTTCAGATAAAAC	TCGCTTATTCCAGTTTATTATTTCAATTCCAACTG
CTTTATATCCCACTACGTTCAGATAAAAC	AGAGTCCACAAAGTCGGGTTTCTCATCTATGATCAAT
CTTTATATCCCACTACGTTCAGATAAAAC	GTTTTTATGTTGGTTATTGTTTATTGTTTTTATAT
CTTTATATCCCACTACGTTCAGATAAAAC	TGACATTGATTTAGGTAAAGATGTTGCAAAAGTGTTTAG
CTTTATATCCCACTACGTTCAGATAAAAC	ACATAGTTCACGAAGATATGTGGAGCTATGGAGATA
CTTTATATCCCACTACGTTCAGATAAAAC	CAACAGACGGAGCCGGATCAATTCCAGGCGCAGCCAA
CTTTATATCCCACTACGTTCAGATAAAAC	CCTTTTCCATGCGATCATTCATGGCAAGCCGATAGCAT
CTTTATATCCCACTACGTTCAGATAAAAC	GGGAACAAGTTTGTTGTGAATCTCATTCATGCGA
CTTTATATCCCACTACGTTCAGATAAAAC	GCGTGGGTGTGTCGAAGGTCATGGAATCGGATTTT
CTTTATATCCCACTACGTTCAGATAAAAC	ACAGGCGTGCTTTGCGGTATCTCGGTCAAGATCAA
CTTTATATCCCACTACGTTCAGATAAAAC	AAGACGGAAGCGCATCAATCGGCAAATTAGCCTTCCT
CTTTATATCCCACTACGTTCAGATAAAAC	GGGATGTTCTCATTGCAAAAGATTTTGATGATAACCAA
CTTTATATCCCACTACGTTCAGATAAAAC	GCCAAGCTCTTTCATCCGTTCAGCAATGTTCAATACAT
CTTTATATCCCACTACGTTCAGATAAAAC	AAGCATCCTTTCTGAAATTGCCCGTATCGGTGGAGCTT
CTTTATATCCCACTACGTTCAGATAAAAC	TAATTTACCCATCTACCAATCTCTTTATCAAAAAT
CTTTATATCCCACTACGTTCAGATAAAAC	AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	ACGATTTGTCCCAAATGACGATGGAGATATAGAGG
CTTTATATCCCACTACGTTCAGATAAAAC	AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	ACGATTTGTCCCAAATGACGATGGAGATATAGAGG
CTTTATATCCCACTACGTTCAGATAAAAC	AGAATGTTTGTAGGATTGGATTTTCCGCCTTTATATA
CTTTATATCCCACTACGTTCAGATAAAAC	GGGAAGTCGTATCATGCTCTTGAATTAGGTTTGCAG
CTTTATATCCCACTACGTTCAGATAAAAC	GGGTAGATCAAGATTAGATATTTTGGATGTGAAAGAA
CTTTATATCCCACTACGTTCAGATAAAAC	CGGCGCCGATTCCGATTGGGAATCCTGCGTTTGAG
CTTTATATCCCACTACGTTCAGATAAAAC	ACTTTTCACGGCTATCTCGTGTCCGACGCTTCGC
CTTTATATCCCACTACGTTCAGATAAAAC	GATTTCACGGATGAAGAGACTGGACAACGGAAGAC
CTTTATATCCCACTACGTTCAGATAAAAC	GTTCCTGCTGTTTGGAACAATTTCTCTTTTTTAGG
CTTTATATCCCACTACGTTCAGATAAAAC	TTTCATGAAGAAATGAAACGGCTAAAGAATTTGAA
CTTTATATCCCACTACGTTCAGATAAAAC	GTTTCTGCTGCGAAAAAGGCTGGTATCGTTTTTGA
CTTTATATCCCACTACGTTCAGATAAAAC	TGAGGGAACAGAAGATTTTATTCACTTTGGATAAAT
CTTTATATCCCACTACGTTCAGATAAAAC	CGCCGATTTCTGAAACGTTTGCCTCATATGCGATCTG
CTTTATATCCCACTACGTTCAGATAAAAC	TCTCCAGCAATCAGACTAGCAATTCGCCGCGCATGT
CTTTATATCCCACTACGTTCAGATAAAAC	ATTTTGGTATAAGGTCGATTCTGAATCGGGTTACGAT
CTTTATATCCCACTACGTTCAGATAAAAC	TGATCCTCAAAGTGTTATTGCCTGGCGACACCAC
CTTTATATCCCACTACGTTCAGATAAAAC	CGGGCAGACGGGGTGAGCTTGGTCAATATCCTGTCAA
CTTTATATCCCACTACGTTCAGATAAAAC	TTATCTCGAATAGCCTGTTTATTAGATTCAAACAC
CTTTATATCCCACTACGTTCAGATAAAAC	GAATCTAGGCTATTTCTTAACTTATAAATTATCT
CTTTATATCCCACTACGTTCAGATAAAAC	TAAAAGTTCAAACTTTACATCTTACAGTAAATTTGATTT
CTTTATATCCCACTACGTTCAGATAAAAC

>NC_012793|6|5|2059339-2062031|CRT
ATCCCTATCCCACTACGTTCAAATAAAAC	CTGTTTGGCTTGTTCTTTCTCGTATATG
CTTTATATCCCACTACGTTCAGATAAAAC	AAATCAGTTCTTCATTAAATGACTATTTAAGAAAACAC
CTTTATATCCCACTACGTTCAGATAAAAC	TCGCTTATTCCAGTTTATTATTTCAATTCCAACTG
CTTTATATCCCACTACGTTCAGATAAAAC	AGAGTCCACAAAGTCGGGTTTCTCATCTATGATCAAT
CTTTATATCCCACTACGTTCAGATAAAAC	GTTTTTATGTTGGTTATTGTTTATTGTTTTTATAT
CTTTATATCCCACTACGTTCAGATAAAAC	TGACATTGATTTAGGTAAAGATGTTGCAAAAGTGTTTAG
CTTTATATCCCACTACGTTCAGATAAAAC	ACATAGTTCACGAAGATATGTGGAGCTATGGAGATA
CTTTATATCCCACTACGTTCAGATAAAAC	CAACAGACGGAGCCGGATCAATTCCAGGCGCAGCCAA
CTTTATATCCCACTACGTTCAGATAAAAC	CCTTTTCCATGCGATCATTCATGGCAAGCCGATAGCAT
CTTTATATCCCACTACGTTCAGATAAAAC	GGGAACAAGTTTGTTGTGAATCTCATTCATGCGA
CTTTATATCCCACTACGTTCAGATAAAAC	GCGTGGGTGTGTCGAAGGTCATGGAATCGGATTTT
CTTTATATCCCACTACGTTCAGATAAAAC	ACAGGCGTGCTTTGCGGTATCTCGGTCAAGATCAA
CTTTATATCCCACTACGTTCAGATAAAAC	AAGACGGAAGCGCATCAATCGGCAAATTAGCCTTCCT
CTTTATATCCCACTACGTTCAGATAAAAC	GGGATGTTCTCATTGCAAAAGATTTTGATGATAACCAA
CTTTATATCCCACTACGTTCAGATAAAAC	GCCAAGCTCTTTCATCCGTTCAGCAATGTTCAATACAT
CTTTATATCCCACTACGTTCAGATAAAAC	AAGCATCCTTTCTGAAATTGCCCGTATCGGTGGAGCTT
CTTTATATCCCACTACGTTCAGATAAAAC	TAATTTACCCATCTACCAATCTCTTTATCAAAAAT
CTTTATATCCCACTACGTTCAGATAAAAC	AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	ACGATTTGTCCCAAATGACGATGGAGATATAGAGG
CTTTATATCCCACTACGTTCAGATAAAAC	AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	ACGATTTGTCCCAAATGACGATGGAGATATAGAGG
CTTTATATCCCACTACGTTCAGATAAAAC	AGAATGTTTGTAGGATTGGATTTTCCGCCTTTATATA
CTTTATATCCCACTACGTTCAGATAAAAC	GGGAAGTCGTATCATGCTCTTGAATTAGGTTTGCAG
CTTTATATCCCACTACGTTCAGATAAAAC	GGGTAGATCAAGATTAGATATTTTGGATGTGAAAGAA
CTTTATATCCCACTACGTTCAGATAAAAC	CGGCGCCGATTCCGATTGGGAATCCTGCGTTTGAG
CTTTATATCCCACTACGTTCAGATAAAAC	ACTTTTCACGGCTATCTCGTGTCCGACGCTTCGC
CTTTATATCCCACTACGTTCAGATAAAAC	GATTTCACGGATGAAGAGACTGGACAACGGAAGAC
CTTTATATCCCACTACGTTCAGATAAAAC	GTTCCTGCTGTTTGGAACAATTTCTCTTTTTTAGG
CTTTATATCCCACTACGTTCAGATAAAAC	TTTCATGAAGAAATGAAACGGCTAAAGAATTTGAA
CTTTATATCCCACTACGTTCAGATAAAAC	GTTTCTGCTGCGAAAAAGGCTGGTATCGTTTTTGA
CTTTATATCCCACTACGTTCAGATAAAAC	TGAGGGAACAGAAGATTTTATTCACTTTGGATAAAT
CTTTATATCCCACTACGTTCAGATAAAAC	CGCCGATTTCTGAAACGTTTGCCTCATATGCGATCTG
CTTTATATCCCACTACGTTCAGATAAAAC	TCTCCAGCAATCAGACTAGCAATTCGCCGCGCATGT
CTTTATATCCCACTACGTTCAGATAAAAC	ATTTTGGTATAAGGTCGATTCTGAATCGGGTTACGAT
CTTTATATCCCACTACGTTCAGATAAAAC	TGATCCTCAAAGTGTTATTGCCTGGCGACACCAC
CTTTATATCCCACTACGTTCAGATAAAAC	CGGGCAGACGGGGTGAGCTTGGTCAATATCCTGTCAA
CTTTATATCCCACTACGTTCAGATAAAAC	TTATCTCGAATAGCCTGTTTATTAGATTCAAACAC
CTTTATATCCCACTACGTTCAGATAAAAC	GAATCTAGGCTATTTCTTAACTTATAAATTATCT
CTTTATATCCCACTACGTTCAGATAAAAC	TAAAAGTTCAAACTTTACATCTTACAGTAAATTTGATTT
CTTTATATCCCACTACGTTCAGATAAAAC

>NC_012793|6|5|2059396-2062031|PILER-CR
CTTTATATCCCACTACGTTCAGATAAAAC	AAATCAGTTCTTCATTAAATGACTATTTAAGAAAACAC
CTTTATATCCCACTACGTTCAGATAAAAC	TCGCTTATTCCAGTTTATTATTTCAATTCCAACTG
CTTTATATCCCACTACGTTCAGATAAAAC	AGAGTCCACAAAGTCGGGTTTCTCATCTATGATCAAT
CTTTATATCCCACTACGTTCAGATAAAAC	GTTTTTATGTTGGTTATTGTTTATTGTTTTTATAT
CTTTATATCCCACTACGTTCAGATAAAAC	TGACATTGATTTAGGTAAAGATGTTGCAAAAGTGTTTAG
CTTTATATCCCACTACGTTCAGATAAAAC	ACATAGTTCACGAAGATATGTGGAGCTATGGAGATA
CTTTATATCCCACTACGTTCAGATAAAAC	CAACAGACGGAGCCGGATCAATTCCAGGCGCAGCCAA
CTTTATATCCCACTACGTTCAGATAAAAC	CCTTTTCCATGCGATCATTCATGGCAAGCCGATAGCAT
CTTTATATCCCACTACGTTCAGATAAAAC	GGGAACAAGTTTGTTGTGAATCTCATTCATGCGA
CTTTATATCCCACTACGTTCAGATAAAAC	GCGTGGGTGTGTCGAAGGTCATGGAATCGGATTTT
CTTTATATCCCACTACGTTCAGATAAAAC	ACAGGCGTGCTTTGCGGTATCTCGGTCAAGATCAA
CTTTATATCCCACTACGTTCAGATAAAAC	AAGACGGAAGCGCATCAATCGGCAAATTAGCCTTCCT
CTTTATATCCCACTACGTTCAGATAAAAC	GGGATGTTCTCATTGCAAAAGATTTTGATGATAACCAA
CTTTATATCCCACTACGTTCAGATAAAAC	GCCAAGCTCTTTCATCCGTTCAGCAATGTTCAATACAT
CTTTATATCCCACTACGTTCAGATAAAAC	AAGCATCCTTTCTGAAATTGCCCGTATCGGTGGAGCTT
CTTTATATCCCACTACGTTCAGATAAAAC	TAATTTACCCATCTACCAATCTCTTTATCAAAAAT
CTTTATATCCCACTACGTTCAGATAAAAC	AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	ACGATTTGTCCCAAATGACGATGGAGATATAGAGG
CTTTATATCCCACTACGTTCAGATAAAAC	AAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	TTGTAAAAACGATTCTTCTACCGCCTTTTCATTCACCAT
CTTTATATCCCACTACGTTCAGATAAAAC	ACGATTTGTCCCAAATGACGATGGAGATATAGAGG
CTTTATATCCCACTACGTTCAGATAAAAC	AGAATGTTTGTAGGATTGGATTTTCCGCCTTTATATA
CTTTATATCCCACTACGTTCAGATAAAAC	GGGAAGTCGTATCATGCTCTTGAATTAGGTTTGCAG
CTTTATATCCCACTACGTTCAGATAAAAC	GGGTAGATCAAGATTAGATATTTTGGATGTGAAAGAA
CTTTATATCCCACTACGTTCAGATAAAAC	CGGCGCCGATTCCGATTGGGAATCCTGCGTTTGAG
CTTTATATCCCACTACGTTCAGATAAAAC	ACTTTTCACGGCTATCTCGTGTCCGACGCTTCGC
CTTTATATCCCACTACGTTCAGATAAAAC	GATTTCACGGATGAAGAGACTGGACAACGGAAGAC
CTTTATATCCCACTACGTTCAGATAAAAC	GTTCCTGCTGTTTGGAACAATTTCTCTTTTTTAGG
CTTTATATCCCACTACGTTCAGATAAAAC	TTTCATGAAGAAATGAAACGGCTAAAGAATTTGAA
CTTTATATCCCACTACGTTCAGATAAAAC	GTTTCTGCTGCGAAAAAGGCTGGTATCGTTTTTGA
CTTTATATCCCACTACGTTCAGATAAAAC	TGAGGGAACAGAAGATTTTATTCACTTTGGATAAAT
CTTTATATCCCACTACGTTCAGATAAAAC	CGCCGATTTCTGAAACGTTTGCCTCATATGCGATCTG
CTTTATATCCCACTACGTTCAGATAAAAC	TCTCCAGCAATCAGACTAGCAATTCGCCGCGCATGT
CTTTATATCCCACTACGTTCAGATAAAAC	ATTTTGGTATAAGGTCGATTCTGAATCGGGTTACGAT
CTTTATATCCCACTACGTTCAGATAAAAC	TGATCCTCAAAGTGTTATTGCCTGGCGACACCAC
CTTTATATCCCACTACGTTCAGATAAAAC	CGGGCAGACGGGGTGAGCTTGGTCAATATCCTGTCAA
CTTTATATCCCACTACGTTCAGATAAAAC	TTATCTCGAATAGCCTGTTTATTAGATTCAAACAC
CTTTATATCCCACTACGTTCAGATAAAAC	GAATCTAGGCTATTTCTTAACTTATAAATTATCT
CTTTATATCCCACTACGTTCAGATAAAAC	TAAAAGTTCAAACTTTACATCTTACAGTAAATTTGATTT
CTTTATATCCCACTACGTTCAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012793.1\|WP_015864171.1\|2066879_2068685_-\|CRISPR-associated-protein-Cst1	unknown	unknown	gnl\|CDD\|187796
NC_012793.1\|WP_015864174.1\|2074198_2075875_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NC_012793.1\|WP_015864159.1\|2051959_2052592_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|378398
NC_012793.1\|WP_015864162.1\|2053666_2054431_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987
NC_012793.1\|WP_012748997.1\|2071754_2072633_+\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_012793.1\|WP_015864170.1\|2065995_2066883_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_012793.1\|WP_015864157.1\|2050261_2050723_+\|YndM-family-protein	unknown	unknown	gnl\|CDD\|371204
NC_012793.1\|WP_015864165.1\|2058215_2059016_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225806
NC_012793.1\|WP_015864172.1\|2068681_2069410_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187783
NC_012793.1\|WP_015864154.1\|2048990_2049398_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286992
NC_012793.1\|WP_015864173.1\|2072853_2074059_-\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180261
NC_012793.1\|WP_015864166.1\|2062251_2062467_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_012793.1\|WP_015864158.1\|2050752_2051943_-\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NC_012793.1\|WP_015864164.1\|2056273_2056819_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|379669
NC_012793.1\|WP_015864168.1\|2063098_2065279_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_012793.1\|WP_015864169.1\|2065291_2065993_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
NC_012793.1\|WP_015864167.1\|2062587_2063085_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_012793.1\|WP_015864155.1\|2049760_2049958_-\|YozQ-family-protein	unknown	unknown	gnl\|CDD\|315803
NC_012793.1\|WP_015864161.1\|2052968_2053631_+\|DUF541-domain-containing-protein	unknown	unknown	gnl\|CDD\|377344
NC_012793.1\|WP_015864163.1\|2054656_2055928_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887

Protein	Function_ID	Function_description	E-value
NC_012793.1\|WP_015864171.1\|2066879_2068685_-\|CRISPR-associated-protein-Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	2.39385e-06
NC_012793.1\|WP_015864174.1\|2074198_2075875_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NC_012793.1\|WP_015864159.1\|2051959_2052592_-\|MFS-transporter	gnl\|CDD\|378398	pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate hydrolysis protein. Members of this family of prokaryotic proteins mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.	2.84915e-62
NC_012793.1\|WP_015864162.1\|2053666_2054431_-\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	1.4183e-11
NC_012793.1\|WP_012748997.1\|2071754_2072633_+\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	8.86522e-29
NC_012793.1\|WP_015864170.1\|2065995_2066883_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.03139e-56
NC_012793.1\|WP_015864157.1\|2050261_2050723_+\|YndM-family-protein	gnl\|CDD\|371204	pfam10710, DUF2512, Protein of unknown function (DUF2512). Proteins in this family are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.	3.48292e-51
NC_012793.1\|WP_015864165.1\|2058215_2059016_+\|AAA-family-ATPase	gnl\|CDD\|225806	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion].	6.10743e-42
NC_012793.1\|WP_015864172.1\|2068681_2069410_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	4.65177e-24
NC_012793.1\|WP_015864154.1\|2048990_2049398_-\|hypothetical-protein	gnl\|CDD\|286992	pfam09967, DUF2201, VWA-like domain (DUF2201). This domain, found in various hypothetical bacterial proteins, has no known function. However, it is clearly related to the VWA domain.	0.000703756
NC_012793.1\|WP_015864173.1\|2072853_2074059_-\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NC_012793.1\|WP_015864166.1\|2062251_2062467_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.53935e-20
NC_012793.1\|WP_015864158.1\|2050752_2051943_-\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	6.37663e-149
NC_012793.1\|WP_015864164.1\|2056273_2056819_+\|transposase-family-protein	gnl\|CDD\|379669	pfam14690, zf-ISL3, zinc-finger of transposase IS204/IS1001/IS1096/IS1165.	0.00190074
NC_012793.1\|WP_015864168.1\|2063098_2065279_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	6.43549e-72
NC_012793.1\|WP_015864169.1\|2065291_2065993_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.96422e-34
NC_012793.1\|WP_015864167.1\|2062587_2063085_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	9.69277e-56
NC_012793.1\|WP_015864155.1\|2049760_2049958_-\|YozQ-family-protein	gnl\|CDD\|315803	pfam13217, DUF4025, Protein of unknown function (DUF4025). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There is a conserved EGT sequence motif.	1.19453e-15
NC_012793.1\|WP_015864161.1\|2052968_2053631_+\|DUF541-domain-containing-protein	gnl\|CDD\|377344	pfam04402, SIMPL, Protein of unknown function (DUF541). Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerization. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.	5.63964e-42
NC_012793.1\|WP_015864163.1\|2054656_2055928_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.39439e-75

>NC_012793.1|WP_015864165.1|2058215_2059016_+|AAA-family-ATPase
MYKSFYSLSREPFAKETDPSEAYQGAPFQEALRALEYVKRTRGIGLLIGEPGAGKTFALRALKESLNPSLYHVVYFPLSTGGVMDFYRGLALGLGEEPKYRKVDLFRQIQQAIERLYHERRITPVFILDEMHLAKDAFLQDIAILFNFEMDSTNPFVLILAGLPHLQGKLRLNQHRPLDQRIIMRYRMGPLEKEEVAGYIEHRMKQAGAKHPIFTPSALEAIALQSRGWPRVINTLATTCLLYGYQLKKDAIDEEVVRMAAEEMGY
>NC_012793.1|WP_015864164.1|2056273_2056819_+|transposase-family-protein
MIQFHDFGIDVQTYAERGKENDFPLLTQCPHCRAKRPLHRHGYYERNALTPHGDYRIWIVRYRCRECLKTVSVLPSFLLPYFQYTLSAVWQVVKEQLGLTEGTNQAPFLPTKDGIIFYVRRFYRNLSNLHSFFARRWRIIGPIVKKEKERASWWIRTLEEHGLYSVIREMWEDGFRHPFAN
>NC_012793.1|WP_015864163.1|2054656_2055928_-|MFS-transporter
MRIRDWDWNLKVRLFGEALVHIAFWMFFPFMAIYFTESFGKDKAGLLLIVSQIFSVIASLMGGYCADVFGRKRMMVLSAYGQGAAFFFFALASSPWFTSPFVGYLCFTIAGICGAFYWPASQAMVADVVPEEHRSSVFAVFYMSINVAVVVGPIIGGVFYEHYLFELLLATAFLFLFLAAVLTKWLRETVPARENGELLHGKWYEFLWQQVRQYSVIVRDRIFLLFIIAGILVAQTVMQLDLLIPVYTKDAVERQTLFSFGDWSFTLTGEKAFGLLISENGLLVVLFTVWVTKWMERYHERTAFVGSSIVYGIAIFLFGQTTSIWGLILVMGLFTFGELMTVGIQQTFISKLAPEEMRGQYFAAASLRWTIGRAIAPLSITATIWLGYEWTFFLLSMLSFISAALYMIMFQLLEKRQTHKALT
>NC_012793.1|WP_015864162.1|2053666_2054431_-|hypothetical-protein
MKQQVSLDETIRGSNRTETRTEGSGTAMLARYEQRKQARLFMQKRRKKYYRLIWRIALAVMAVWGIGGLILKGYGALKNTAERKVAIMRLEQALKDEDIADLKKYIRIPDESLSVNETTLQPLFAYLKDHPNAYEKLEKDFEKQQKMKHVYIKGLTSKPPIFTIKVYGDRYVFEPTLYFFNIRLNEPDDKIIINGKEVKGKPTKDPLVKKVGPYLPGTYTITSVKKDGEKREKQTKKVALFGGSRVHEVDLTRE
>NC_012793.1|WP_015864161.1|2052968_2053631_+|DUF541-domain-containing-protein
MQEWYMPIQRSKPAVKTITVTGQGTIITKPDTVIITLGVRTEHKNVHEALAENAKRANAMIHALKAIGVREENIDTASFSIYPKYDYSNGNAALIGYEVEHIFDITVKDPKSVGNIYDTAVQNGANIARHIQFRLANEQPYYQQALSLAVKNAKEKAIVIARTLGLPLHDIPIQVTEESVAPSIPRTPSSIATLAASKAVTPIQTQDIIITATVQAVFPY
>NC_012793.1|WP_015864159.1|2051959_2052592_-|MFS-transporter
MKQLLRTLWRWFVSWNVGVIVAVTTFFLTDFRFFPSFLSGMGAMLATSFVMKKRDGKITPGGLLKEEKVYIHSQLHEARKKWKQMRIARFRVRSLVMWQKISRICTAVDKMIRAVEQHPHQFRLAQSFFLNELPMAVTMIEKYVYLINQPVRNQEMKEALWKTERLLDEVAASAERRLLEILSNDVFDLQVETKLLEQSLEQQKLPETIK
>NC_012793.1|WP_015864158.1|2050752_2051943_-|toxic-anion-resistance-protein
MKPSDHMPANDLREQWTSSLDSLLENPFSLPNEQEETDIHKQTQPTRLIDTLKPEHRDKALQLAKQIDPRNQQAIIQYGVAAQAELSKFSHTILHHVQTKDAGPVGEVISDLMTKIKEVNPDDLLPAKKGLFARLFGSVSKSLQGMIAKYQKIGVEIDKIADQLEKHRQLLFRDIMMLETLYEKNKEYFDALNIYIAAAEYKLEELRTKVIPEKRAQAERSGNQMEMQEVNDLLQFADRLEKRIHDLKLSRQVTIQTAPQIRMIQHMNQTLVERIQSSILTAIPLWKNQVVIALTLFRQQKAVEAQKQVTETTNNLLLRNSEMLKTNSIEVAKENERGLIDIETLKKTQENLVTTLEETLKIQQEGRLKRQQVERELVTMEEQLKQTLLSLKRNDG
>NC_012793.1|WP_015864157.1|2050261_2050723_+|YndM-family-protein
MRHLLALAWKYVLLATVFFAMIPLFLRVSSAELLWFSLWMTLVAYALGDLYILPRFGNLSAVIADFGLAFVGVWIGIGIFYNAGGAAVINAAFFSALLVALGEILFHAYMNRIVLRHQDEKKEHSMRRGLQTEIAEEFDVRSATDQEEDKQES
>NC_012793.1|WP_015864155.1|2049760_2049958_-|YozQ-family-protein
MKKQENLNIAGKQYDPSDYERTSSLSSVLATTHEQVSDVYMEGTVDGVIEDVNGKDIPLSGQNEQ
>NC_012793.1|WP_015864154.1|2048990_2049398_-|hypothetical-protein
MKWQRALLSLLKERKDHSIALAIDTSNRPSRPILIQNIVKLFEKVRPDTLLVQADFKIRDVSPVGMAAIKYFKHGKSSYTEVLEWAKEQKIDTLFYITDVTGYFYEELEVDYEVFWLVPDDYTPRVPFGKPIRVA
>NC_012793.1|WP_015864166.1|2062251_2062467_-|CRISPR-associated-endonuclease-Cas2
MCKKLKEYLTWTQNSVFEGEISKSLLMKCMYELELIINKEEDSIYLYQVPNPKNIKKQVFGQERNFDELFI
>NC_012793.1|WP_015864167.1|2062587_2063085_-|CRISPR-associated-protein-Cas4
MVSGVQMHYYKVCKRKLWLFSKGIALEEEHDRVVEGKILHERAYPRLDEREILVDSTFKLDALDGEYIREIKISSKMADADRFQMLYYLYELKKRGIIKKGLISYTKERKTEEVILTEKDEKEIEKAIGEIYRVLQLHSPPRLKKLTYCPKCAYYEFCYALEGDE
>NC_012793.1|WP_015864168.1|2063098_2065279_-|CRISPR-associated-helicase/endonuclease-Cas3
MTFYAKSETKETIREHTDRLLDNLWLLKNSYGHKFVRMDERMWELLRLAVEYHDVGKANTVFQNKIRRAIREEMLETDCDADVPHNYLSVGLIPFSRLDLTKEESRLLIHAVGYHHERDKPPDKEMIRHILETDMKNQRNAISEHMKLPLAEKLSFRFVDRLLKRYTIHDGDQFWNYVLLKGLLHRIDHAASAHLPVEIDIDQSIGASVRNYMNQQGFRKNALQQFTEANQDKNVVVVAQTGMGKTEAALLWIGDDKAFFTLPLRVSINAIYERIRDKMGYDAVGLLHSTSVHYLAEKGEENWEAIKQQSQQLSTKLLMTTIDQILKFPFYYRGFEKELATMANSKIVIDEIQAYDPKIAAMLIKALEMIHNVGGKFMIMTATLPTLYLDELKKRNIINEEHSVFGEFIDTSKHRHRIQLHAKEITEGLEDIVRKAQTSQVLVIVNTVRRAIELYQSLSEHEQNIPVYLLHSQFTQEDRQLLERKIKEFNDKKINGIWITTQLVEASIDIDFDYLFTEMSTLDSLFQRLGRCYRKRILDEERCNVHIFTENISGVPRVYNEHLINESIKLLQPYDGHILDERTKVEMVKQLYERKRLIGTAFLQEFEDALYMFDNLDPYGMNKKEAQRKLRDIQNIQVVPRRIYDGMIDLLEAYAACRDVKERLRLRMEIEKKTVSVQRFIAEKYVSERLPKPFEHIYIIDVEYDFQRETSKGKGILLDTPMSTFY
>NC_012793.1|WP_015864169.1|2065291_2065993_-|type-I-B-CRISPR-associated-protein-Cas5
MKALRMKLFQETACYKKPFASKVAETYPLPPYSTVKGMLHALVRADEFIPMRLSIQGQYEAKLLDYQRYYFFKKKEMESFPLILDGVRDVDFSYGKNEITTMPMYTHLLYRVELLIHVEAKDEVLENIIQAIETGSGHYSLGRWEDLVRIDEYKLVHVQELDEEKELRYNAYIPKHLLDEEIRYIPYEVNWKYEIVNGIRQWETVHVGYVLKGTTAPEGAMVDEDGELVFYHV
>NC_012793.1|WP_015864170.1|2065995_2066883_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MTKSLTMTVVFQAGSLNYGEGIANISELKKFHRGNGEVYTYASRQSLRYDIVRLGNELFDWNLNTVDKASGVVQFKKDVTIKDSVEMDLFGYLKTDKNSQKRAAVVRLSHAISLEPYKSDLEFLNNMGLASRIGQDANLANIEQHQSFYTYTLTIDLNRVGVDGDIELSNAEKATRVQQLLDIVKILNRNIRGRRENLAPLFIIGGVYDVANPFFLGKILLSSSSQGWEIQSQPIVETMEQTFAGQTVGEQTRIGFLRGIFANEGEFADLFADKVGSVEQFFQYISEQIQAYYGV
>NC_012793.1|WP_015864171.1|2066879_2068685_-|CRISPR-associated-protein-Cst1
MKVQLRMGEWMITMGLVGLYRVFEYGLKNEIIDQQYRRSISIRPWGLELDVDVLSQLPKAYFLYLMDEYSVAKRDSEKLQLYMKQAEKEAQFSYALSAIKKTITDTGKKVLKYFSHPPLANALEALKQVKKPENFELLATCAHTFETALYEPKINEKLTLNYFKAAILKAFFGQVSFLNVSKNSLDLQGHIQEFQKDYIAPAQYDLQFEHILADAKSSEEIIAFLDKHKDYQPFKVLKRAWKNKTLEDIQDYVKNTITKCLLLHDRLAFYNFEEMVFAPIGVAKNNAFNFNWNLEDHQPKPISSLAKLVLFFAPAGAAIYLKKEGVNEQGEYRTYAGFVQSDAAFSEILQKNNHFKQLKQQKEPFDRIVSKLVQGITKEAEYVADHLFFLEFSSDYDSKKTHLHYYHLPMYLAYYFKNCKGKLDYIQPYEYREHFVQYVLRGEDPAIVIYSYLRYCIEKGNSHIGPYITVRERNRILQLKKGVKDMSSTDKRVYAVFRSGQEIRKALEQAAASKTSEQYSASSNKKVNAIAYRLLNAAKAGNQKSFMDTLFRLHMSAEKPISPIFLNALHERDLDFATVANAFIAGLLSSGLQEEQEDVVS
>NC_012793.1|WP_015864172.1|2068681_2069410_-|CRISPR-associated-endoribonuclease-Cas6
MRISCSFETDKIPIHYRMAMVSIIKEALRISDEEYYHRLYQRGQRTKPFVFSTYLKNFHIINHEIELDGITLTVSSPDHEFLLNLYNGLQKNQAFSYKDYHFVKKKIAVVKEKQVTSPSVVFRTLSPILIEDEKGNPIAPDDASYEGHVNYVADMILSQYRGKGLYAPLSIKPIYFKKVVVKESNHEFAATHGNDEYLYFTAYHGLFAITGHPGDLQLLYQLGLSKRRNQGFGQLEIEEVRG
>NC_012793.1|WP_012748997.1|2071754_2072633_+|IS982-family-transposase
MQEHFHFTTDPAKLQKQYAAIFCFVSAQLSLIQMYLHRRNRHLVKQEDEVVMAVHLLGKLLGFSSERAWHRFVTGNLFTNGSFLERSRYNRRCRALGFAIKWIRHELAKRGQHHAYAVVDSLPLPLCHPARMQRVKRFRGIADMGYCASKKQWYYGFKLHLQVTNQGLAMGYVVTEASCHDVKAAETVMTQIPHPYNFGDKGYISHALREKLYEEHQAAFWTPSRHNQKHGPSKAWEEWIQKKRKVIETVFSILVDQYRITDIRANSIAGFEVALDGILLAYSLVTLGLVER
>NC_012793.1|WP_015864173.1|2072853_2074059_-|acetyl-CoA-C-acyltransferase
MREVVIVDAVRTPIGKYKGALKDVRPDDLGATVIRALVERNPNLPVHEIEEVVLGNANQAGEDNRNVARMSALLAGLPVEVAGTTVNRLCGSGLDAVNYAARTIMTGEADIVIAGGTESMTRAPFVMAKPSTDFPRGNMEMFDTTIGWRFINPKMEEMYGTDSMPQTAENVAKRFGISREAQDEFAYESQMKAKKAIESNRFADELVPVVYVDRKGNEVIVDKDEHPRPDTTLEKLAKLPPLFENGTVTAGNASGVNDGASALLLMSAEKAKELGMKPLAKYVTSAVAGVEPAVMGIGPIYATRKALSRAKLTIDDIGLVELNEAFASQSLECIKQLELDRAKVNVNGGAIALGHPLGASGARILTTLVYEMKKRRVKYGLATMCVGVGQGIATIVENPEV
>NC_012793.1|WP_015864174.1|2074198_2075875_-|dihydroxy-acid-dehydratase
MRKLRSDMIKKGFDRAPHRSLLRAAGVKEEDFDKPFIAVVNSYIDIIPGHVHLQEFGKIVKEAIREAGGVPFEMNTIGVDDGIAMGHIGMRYSLPSREIIADSIETVISAHWFDGMVCIPNCDKITPGMMMAAMRLNIPTIFVSGGPMKAGVTSDGRKISLSSVFEGVGAYQAGKIDEKGLQELEKYGCPTCGSCSGMFTANSMNCLAEALGLALPGNGTILAVDPARKELVRQSAKQLMYLIEHDIKPSDIVTEKAIDNAFALDMALGGSTNTVLHTLAIANEAGIDYSLERINEIAARVPHLAKLAPASDVHIEDLHEAGGVSAVLNELAKKEGTLHLDTLTVTGKTLGENIAGCEVKDYNVIRPIDNPYSETGGLAVLFGNLAPDGAIIKTGGVQAGITRHEGPAIVFDSQEEALEGIASGKVKPGHVVVIRYEGPKGGPGMPEMLAPTSQIVGMGLGTKVALITDGRFSGASRGLSVGHVSPEAAEGGPIAFIEDGDIIEIDITNRTINAKLSDEEWEKRKANWKGFEPKVKTGYLARYSKLVTSASTGGIMKI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_012793_2	2.28\|360768\|38\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	360768-360805	38	NC_008376	Geobacillus phage GBSV1, complete genome	16369-16406	0	1.0
NC_012793_2	2.29\|360836\|38\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	360836-360873	38	NC_029073	Geobacillus virus E3, complete genome	138448-138485	0	1.0
NC_012793_3	3.10\|371180\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	371180-371216	37	AB823818	Phage phi OH2 DNA, complete genome	29899-29935	0	1.0
NC_012793_6	6.38\|2061771\|37\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2061771-2061807	37	NC_029073	Geobacillus virus E3, complete genome	104298-104334	0	1.0
NC_012793_1	1.2\|348913\|38\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	348913-348950	38	NC_009552	Geobacillus virus E2, complete genome	3265-3302	1	0.974
NC_012793_1	1.18\|349994\|36\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	349994-350029	36	NC_008376	Geobacillus phage GBSV1, complete genome	18667-18702	1	0.972
NC_012793_1	1.17\|349928\|36\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	349928-349963	36	NC_009737	Bacillus virus 1, complete genome	17964-17999	2	0.944
NC_012793_1	1.18\|349994\|36\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	349994-350029	36	NC_009737	Bacillus virus 1, complete genome	18991-19026	2	0.944
NC_012793_2	2.30\|360904\|36\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	360904-360939	36	NC_009737	Bacillus virus 1, complete genome	17393-17428	2	0.944
NC_012793_4	4.7\|373109\|25\|NC_012793\|CRT	373109-373133	25	MN693025	Marine virus AFVG_117M63, complete genome	5892-5916	4	0.84
NC_012793_6	6.1\|2059368\|28\|NC_012793\|CRISPRCasFinder,CRT	2059368-2059395	28	NZ_CP033074	Buttiauxella sp. 3AFRM03 plasmid pBTX_120, complete sequence	98015-98042	5	0.821
NC_012793_6	6.1\|2059368\|28\|NC_012793\|CRISPRCasFinder,CRT	2059368-2059395	28	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1212102-1212129	5	0.821
NC_012793_6	6.1\|2059368\|28\|NC_012793\|CRISPRCasFinder,CRT	2059368-2059395	28	KC292024	Halovirus HHTV-2, complete genome	48048-48075	6	0.786
NC_012793_3	3.14\|371381\|32\|NC_012793\|CRT	371381-371412	32	NZ_CP031836	Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence	194958-194989	7	0.781
NC_012793_3	3.14\|371381\|32\|NC_012793\|CRT	371381-371412	32	NZ_CP020458	Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence	208157-208188	7	0.781
NC_012793_2	2.11\|359638\|35\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359638-359672	35	NZ_CP024317	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp72, complete sequence	14663-14697	8	0.771
NC_012793_2	2.11\|359638\|35\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359638-359672	35	NZ_CP024206	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp72, complete sequence	14668-14702	8	0.771
NC_012793_2	2.11\|359638\|35\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359638-359672	35	NZ_CP024352	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp72, complete sequence	14679-14713	8	0.771
NC_012793_2	2.11\|359638\|35\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359638-359672	35	NZ_CP021873	Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence	16214-16248	8	0.771
NC_012793_2	2.11\|359638\|35\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359638-359672	35	NZ_CP024372	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp72, complete sequence	14657-14691	8	0.771
NC_012793_2	2.11\|359638\|35\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359638-359672	35	NZ_CP024391	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp72, complete sequence	58853-58887	8	0.771
NC_012793_2	2.11\|359638\|35\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359638-359672	35	NZ_CP024334	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp72, complete sequence	57712-57746	8	0.771
NC_012793_2	2.12\|359703\|36\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359703-359738	36	MT028491	Ochrobactrum phage vB_OspM_OC, complete genome	96455-96490	8	0.778
NC_012793_3	3.8\|371046\|36\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	371046-371081	36	AB823818	Phage phi OH2 DNA, complete genome	23968-24003	8	0.778
NC_012793_3	3.14\|371381\|32\|NC_012793\|CRT	371381-371412	32	NZ_KY303941	Enterococcus faecalis strain 3 plasmid pGTC3, complete sequence	132391-132422	8	0.75
NC_012793_3	3.14\|371381\|32\|NC_012793\|CRT	371381-371412	32	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	2351-2382	8	0.75
NC_012793_2	2.27\|360701\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	360701-360737	37	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	172944-172980	9	0.757
NC_012793_3	3.14\|371381\|32\|NC_012793\|CRT	371381-371412	32	NZ_CP040339	Bacillus luti strain FJ plasmid unnamed3, complete sequence	14428-14459	9	0.719
NC_012793_6	6.17\|2060410\|35\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060410-2060444	35	HQ332137	Prochlorococcus phage P-SSP3 genomic sequence	29293-29327	9	0.743
NC_012793_6	6.17\|2060410\|35\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060410-2060444	35	GU071107	Cyanophage P-SSP2, complete genome	23334-23368	9	0.743
NC_012793_6	6.31\|2061318\|35\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2061318-2061352	35	MN694024	Marine virus AFVG_250M601, complete genome	14521-14555	9	0.743
NC_012793_2	2.5\|359238\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359238-359274	37	NZ_KT897276	Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence	39274-39310	10	0.73
NC_012793_2	2.5\|359238\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359238-359274	37	NZ_KT897280	Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence	38185-38221	10	0.73
NC_012793_2	2.5\|359238\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359238-359274	37	NZ_KT897277	Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence	39274-39310	10	0.73
NC_012793_2	2.5\|359238\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359238-359274	37	NZ_KT897278	Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence	38185-38221	10	0.73
NC_012793_2	2.5\|359238\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	359238-359274	37	NZ_KT897279	Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence	38185-38221	10	0.73
NC_012793_3	3.10\|371180\|37\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	371180-371216	37	KY271401	Klebsiella phage 1 LV-2017, complete genome	16923-16959	10	0.73
NC_012793_6	6.5\|2059622\|35\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2059622-2059656	35	NZ_CP039728	Bacillus sp. S3 plasmid unnamed, complete sequence	229532-229566	10	0.714
NC_012793_3	3.3\|370714\|38\|NC_012793\|PILER-CR,CRISPRCasFinder,CRT	370714-370751	38	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	562553-562590	11	0.711
NC_012793_6	6.14\|2060209\|38\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060209-2060246	38	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	128149-128186	11	0.711
NC_012793_6	6.14\|2060209\|38\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060209-2060246	38	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	182714-182751	11	0.711
NC_012793_6	6.14\|2060209\|38\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060209-2060246	38	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	176598-176635	11	0.711
NC_012793_6	6.14\|2060209\|38\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060209-2060246	38	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	186008-186045	11	0.711
NC_012793_6	6.14\|2060209\|38\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060209-2060246	38	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	53817-53854	11	0.711
NC_012793_6	6.14\|2060209\|38\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060209-2060246	38	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	92573-92610	11	0.711
NC_012793_6	6.14\|2060209\|38\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2060209-2060246	38	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	182714-182751	11	0.711
NC_012793_6	6.28\|2061127\|34\|NC_012793\|CRISPRCasFinder,CRT,PILER-CR	2061127-2061160	34	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	212987-213020	11	0.676

1. spacer 2.28|360768|38|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 0, identity: 1.0

ttatagcgaagcgaccaataatggatatgatggggaac	CRISPR spacer
ttatagcgaagcgaccaataatggatatgatggggaac	Protospacer
**************************************

2. spacer 2.29|360836|38|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 0, identity: 1.0

ccatcatcaggtagcaagttgccatcttgctacgacaa	CRISPR spacer
ccatcatcaggtagcaagttgccatcttgctacgacaa	Protospacer
**************************************

3. spacer 3.10|371180|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to AB823818 (Phage phi OH2 DNA, complete genome) position: , mismatch: 0, identity: 1.0

atattgaaatcattaccgtagtgactgcaaagggcga	CRISPR spacer
atattgaaatcattaccgtagtgactgcaaagggcga	Protospacer
*************************************

4. spacer 6.38|2061771|37|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 0, identity: 1.0

cgggcagacggggtgagcttggtcaatatcctgtcaa	CRISPR spacer
cgggcagacggggtgagcttggtcaatatcctgtcaa	Protospacer
*************************************

5. spacer 1.2|348913|38|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NC_009552 (Geobacillus virus E2, complete genome) position: , mismatch: 1, identity: 0.974

tctgtccgggatgtactgaagcatacggttgacggcgc	CRISPR spacer
tctgtccgggatgtgctgaagcatacggttgacggcgc	Protospacer
**************.***********************

6. spacer 1.18|349994|36|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NC_008376 (Geobacillus phage GBSV1, complete genome) position: , mismatch: 1, identity: 0.972

ttccccgcctgccgcgaccgcttggccccactcttg	CRISPR spacer
ttccccgcctgccgcgaccgctcggccccactcttg	Protospacer
**********************.*************

7. spacer 1.17|349928|36|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 2, identity: 0.944

tatttgttgagctgcgcttctgtgtactcgatttcc	CRISPR spacer
tatttgttcaactgcgcttctgtgtactcgatttcc	Protospacer
******** *.*************************

8. spacer 1.18|349994|36|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 2, identity: 0.944

ttccccgcctgccgcgaccgcttggccccactcttg	CRISPR spacer
ttcgccgcctgccgcgaccgcttggccccactcctg	Protospacer
*** *****************************.**

9. spacer 2.30|360904|36|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NC_009737 (Bacillus virus 1, complete genome) position: , mismatch: 2, identity: 0.944

gattggatgctggcaataattaaatcctgtaactcc	CRISPR spacer
gattggatgctggcaataatcaaatcctgcaactcc	Protospacer
********************.********.******

10. spacer 4.7|373109|25|NC_012793|CRT matches to MN693025 (Marine virus AFVG_117M63, complete genome) position: , mismatch: 4, identity: 0.84

ccaagctaaaaaaggttctattatt	CRISPR spacer
aaaaggtaaaaaaggttctattgtt	Protospacer
  *** ****************.**

11. spacer 6.1|2059368|28|NC_012793|CRISPRCasFinder,CRT matches to NZ_CP033074 (Buttiauxella sp. 3AFRM03 plasmid pBTX_120, complete sequence) position: , mismatch: 5, identity: 0.821

ctgtttggcttgttctttctcgtatatg	CRISPR spacer
gtgttgggctttttctttctcgtataca	Protospacer
 **** ***** **************..

12. spacer 6.1|2059368|28|NC_012793|CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 5, identity: 0.821

ctgtttggcttgttctttctcgtatatg-	CRISPR spacer
ttgtttggcttgttctttgtcgc-tacgt	Protospacer
.***************** ***. **.*

13. spacer 6.1|2059368|28|NC_012793|CRISPRCasFinder,CRT matches to KC292024 (Halovirus HHTV-2, complete genome) position: , mismatch: 6, identity: 0.786

ctgtttggcttgttctttctcgtatatg	CRISPR spacer
ctgtttggcctgttccttctcgtccagc	Protospacer
*********.*****.******* .*

14. spacer 3.14|371381|32|NC_012793|CRT matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

tttcatccgaatatttcagaaaatctttaatt	CRISPR spacer
ctagattggaataattgagaaaatctttaatt	Protospacer
.*  **. ***** ** ***************

15. spacer 3.14|371381|32|NC_012793|CRT matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 7, identity: 0.781

tttcatccgaatatttcagaaaatctttaatt	CRISPR spacer
ctagattggaataattgagaaaatctttaatt	Protospacer
.*  **. ***** ** ***************

16. spacer 2.11|359638|35|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024317 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp72, complete sequence) position: , mismatch: 8, identity: 0.771

attgaaatataaaacataaatattgacttaaacaa	CRISPR spacer
aattaaatataaaatagaaatattgacttggacgt	Protospacer
* * **********.* ************..**.

17. spacer 2.11|359638|35|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024206 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp72, complete sequence) position: , mismatch: 8, identity: 0.771

attgaaatataaaacataaatattgacttaaacaa	CRISPR spacer
aattaaatataaaatagaaatattgacttggacgt	Protospacer
* * **********.* ************..**.

18. spacer 2.11|359638|35|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024352 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp72, complete sequence) position: , mismatch: 8, identity: 0.771

attgaaatataaaacataaatattgacttaaacaa	CRISPR spacer
aattaaatataaaatagaaatattgacttggacgt	Protospacer
* * **********.* ************..**.

19. spacer 2.11|359638|35|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021873 (Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence) position: , mismatch: 8, identity: 0.771

attgaaatataaaacataaatattgacttaaacaa	CRISPR spacer
aattaaatataaaatagaaatattgacttggacgt	Protospacer
* * **********.* ************..**.

20. spacer 2.11|359638|35|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024372 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp72, complete sequence) position: , mismatch: 8, identity: 0.771

attgaaatataaaacataaatattgacttaaacaa	CRISPR spacer
aattaaatataaaatagaaatattgacttggacgt	Protospacer
* * **********.* ************..**.

21. spacer 2.11|359638|35|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024391 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp72, complete sequence) position: , mismatch: 8, identity: 0.771

attgaaatataaaacataaatattgacttaaacaa	CRISPR spacer
aattaaatataaaatagaaatattgacttggacgt	Protospacer
* * **********.* ************..**.

22. spacer 2.11|359638|35|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024334 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp72, complete sequence) position: , mismatch: 8, identity: 0.771

attgaaatataaaacataaatattgacttaaacaa	CRISPR spacer
aattaaatataaaatagaaatattgacttggacgt	Protospacer
* * **********.* ************..**.

23. spacer 2.12|359703|36|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to MT028491 (Ochrobactrum phage vB_OspM_OC, complete genome) position: , mismatch: 8, identity: 0.778

ctctttttgttcttgaagctgtttcacatatgctag	CRISPR spacer
gtgatgctgttcatgaagctgttacacatatgctgg	Protospacer
 *  * .***** ********** **********.*

24. spacer 3.8|371046|36|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to AB823818 (Phage phi OH2 DNA, complete genome) position: , mismatch: 8, identity: 0.778

taagtataacacgggaggggtccgagtgggaaaacg	CRISPR spacer
atattataccacgggaggggtccgagtggtaaagta	Protospacer
  * **** ******************** ***...

25. spacer 3.14|371381|32|NC_012793|CRT matches to NZ_KY303941 (Enterococcus faecalis strain 3 plasmid pGTC3, complete sequence) position: , mismatch: 8, identity: 0.75

-tttcatccgaatatttcagaaaatctttaatt	CRISPR spacer
gcgataacc-aatatttcagaaaatcttgattt	Protospacer
 .  .* ** ****************** * **

26. spacer 3.14|371381|32|NC_012793|CRT matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tttcatccgaatatttcagaaaatctttaatt--	CRISPR spacer
gttcatccgaatattccagagaatgtc--atcgg	Protospacer
 **************.****.*** *.  **.

27. spacer 2.27|360701|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.757

cagcgacttttacaaggttaacgcccttcaaatactc	CRISPR spacer
tagcgacttttacaaggtcaacgaccttgtatttatg	Protospacer
.*****************.**** ****  * *  *

28. spacer 3.14|371381|32|NC_012793|CRT matches to NZ_CP040339 (Bacillus luti strain FJ plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tttcatccgaatatttcagaaaatctttaatt	CRISPR spacer
tagctaaaaaatatttcaaaaaatgtttaatt	Protospacer
*  *    .*********.***** *******

29. spacer 6.17|2060410|35|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to HQ332137 (Prochlorococcus phage P-SSP3 genomic sequence) position: , mismatch: 9, identity: 0.743

taatttacccatctaccaatctctttatcaaaaat	CRISPR spacer
tgccatacccatctaccactatctttatcaagttt	Protospacer
*. . ************* * **********.  *

30. spacer 6.17|2060410|35|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to GU071107 (Cyanophage P-SSP2, complete genome) position: , mismatch: 9, identity: 0.743

taatttacccatctaccaatctctttatcaaaaat	CRISPR spacer
tgccatacccatctaccactatctttatcaagttt	Protospacer
*. . ************* * **********.  *

31. spacer 6.31|2061318|35|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to MN694024 (Marine virus AFVG_250M601, complete genome) position: , mismatch: 9, identity: 0.743

tttcatgaagaaatgaaacggctaaagaatttgaa	CRISPR spacer
tacctggaagaaataaaactgctaaagaattgcat	Protospacer
* .*  ********.**** ***********  *

32. spacer 2.5|359238|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897276 (Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence) position: , mismatch: 10, identity: 0.73

aggtgcatcaaatgaaacagtatttttgtcagattcg	CRISPR spacer
taatatatcaaatgaaacagtatatttatcagaagca	Protospacer
 ..*..***************** ***.*****  *.

33. spacer 2.5|359238|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897280 (Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence) position: , mismatch: 10, identity: 0.73

aggtgcatcaaatgaaacagtatttttgtcagattcg	CRISPR spacer
caatatatcaaatgaaacagtatatttatcagaagca	Protospacer
 ..*..***************** ***.*****  *.

34. spacer 2.5|359238|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897277 (Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence) position: , mismatch: 10, identity: 0.73

aggtgcatcaaatgaaacagtatttttgtcagattcg	CRISPR spacer
taatatatcaaatgaaacagtatatttatcagaagca	Protospacer
 ..*..***************** ***.*****  *.

35. spacer 2.5|359238|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897278 (Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence) position: , mismatch: 10, identity: 0.73

aggtgcatcaaatgaaacagtatttttgtcagattcg	CRISPR spacer
caatatatcaaatgaaacagtatatttatcagaagca	Protospacer
 ..*..***************** ***.*****  *.

36. spacer 2.5|359238|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897279 (Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence) position: , mismatch: 10, identity: 0.73

aggtgcatcaaatgaaacagtatttttgtcagattcg	CRISPR spacer
caatatatcaaatgaaacagtatatttatcagaagca	Protospacer
 ..*..***************** ***.*****  *.

37. spacer 3.10|371180|37|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 10, identity: 0.73

atattgaaatcattaccgtagtgactgcaaagggcga	CRISPR spacer
ttcgagaaatcactaccgtagtgactgaaaaacccgc	Protospacer
 *   *******.************** ***.  **

38. spacer 6.5|2059622|35|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039728 (Bacillus sp. S3 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gtttttatgttggttattgtttattgtttttatat	CRISPR spacer
ctttttaagttggttattggttattgggtcagtta	Protospacer
 ****** *********** ******  *. .*

39. spacer 3.3|370714|38|NC_012793|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.711

atgcgtaggcgttgacgatggattccttgattgtgtcc	CRISPR spacer
tttcgtaggcgttgacgatggtttccgtgaaactaaag	Protospacer
 * ****************** **** ***   *.

40. spacer 6.14|2060209|38|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.711

gggatgttctcattgcaaaagattttgatgataaccaa	CRISPR spacer
tccctattctctttgcaaaagattttgaagataaattt	Protospacer
    *.***** **************** ***** .

41. spacer 6.14|2060209|38|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 11, identity: 0.711

gggatgttctcattgcaaaagattttgatgataaccaa	CRISPR spacer
tccctattctctttgcaaaagattttgaagataaattt	Protospacer
    *.***** **************** ***** .

42. spacer 6.14|2060209|38|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 11, identity: 0.711

gggatgttctcattgcaaaagattttgatgataaccaa	CRISPR spacer
tccctattctctttgcaaaagattttgaagataaattt	Protospacer
    *.***** **************** ***** .

43. spacer 6.14|2060209|38|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.711

gggatgttctcattgcaaaagattttgatgataaccaa	CRISPR spacer
tccctattctctttgcaaaagattttgaagataaattt	Protospacer
    *.***** **************** ***** .

44. spacer 6.14|2060209|38|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 11, identity: 0.711

gggatgttctcattgcaaaagattttgatgataaccaa	CRISPR spacer
tccctattctctttgcaaaagattttgaagataaattt	Protospacer
    *.***** **************** ***** .

45. spacer 6.14|2060209|38|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 11, identity: 0.711

gggatgttctcattgcaaaagattttgatgataaccaa	CRISPR spacer
tccctattctctttgcaaaagattttgaagataaattt	Protospacer
    *.***** **************** ***** .

46. spacer 6.14|2060209|38|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.711

gggatgttctcattgcaaaagattttgatgataaccaa	CRISPR spacer
tccctattctctttgcaaaagattttgaagataaattt	Protospacer
    *.***** **************** ***** .

47. spacer 6.28|2061127|34|NC_012793|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 11, identity: 0.676

acttttcacggctatctcgtgtccgacgcttcgc	CRISPR spacer
gatgccttgggctatctcgtgtccgacggctcgg	Protospacer
. * ...  ******************* .***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

155157 : 298879

109

Synechococcus_phage(11.43%)

transposase,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748908.1\|155157_155904_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_012748909.1\|156049_156487_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_012748910.1\|156509_156902_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_012748911.1\|157026_157467_+	YbaK family protein	NA	NA	NA	NA
WP_012748912.1\|157531_158239_+	N-acetylmuramoyl-L-alanine amidase CwlD	A0A067ZJB6	Vibrio_phage	1.1e-14	30.5
WP_012748913.1\|158337_159354_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_041269773.1\|159393_160023_-	hypothetical protein	NA	NA	NA	NA
WP_012748915.1\|162148_162754_+	KinB signaling pathway activation protein	NA	NA	NA	NA
WP_012748916.1\|162850_163612_-	polysaccharide deacetylase family sporulation protein PdaB	NA	NA	NA	NA
WP_012748917.1\|171556_172459_+	arginase	A0A1V0SJM8	Klosneuvirus	2.8e-28	33.1
WP_041269551.1\|172618_173182_+	RNA polymerase sigma factor SigW	NA	NA	NA	NA
WP_012748919.1\|173195_173807_+	anti-sigma-W factor RsiW	NA	NA	NA	NA
WP_012748920.1\|173908_174730_+	TIGR00159 family protein	NA	NA	NA	NA
WP_012748921.1\|174722_175958_+	YbbR-like domain-containing protein	NA	NA	NA	NA
WP_012748922.1\|175986_177333_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_012748923.1\|177797_179600_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	Q84421	Paramecium_bursaria_Chlorella_virus	7.7e-102	39.2
WP_003247648.1\|179921_180401_+	flavin reductase family protein	NA	NA	NA	NA
WP_012748924.1\|180707_181874_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.2e-25	25.1
WP_012748925.1\|182203_183286_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_083767422.1\|185561_186284_-	ABC transporter permease	NA	NA	NA	NA
WP_012748926.1\|186280_187456_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.7e-18	24.0
WP_012748927.1\|188054_188513_-	hypothetical protein	NA	NA	NA	NA
WP_012748928.1\|188619_190017_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.6e-49	39.9
WP_041269778.1\|190009_190696_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-49	41.0
WP_012748925.1\|190786_191869_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_012748931.1\|192820_193291_+	YjdJ family protein	NA	NA	NA	NA
WP_141103830.1\|193397_194045_+	hypothetical protein	NA	NA	NA	NA
WP_012748933.1\|194346_194679_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_012748934.1\|194675_195368_+	DUF1129 family protein	NA	NA	NA	NA
WP_012748935.1\|195509_196220_+	DsbA family oxidoreductase	NA	NA	NA	NA
WP_012748936.1\|196281_196746_-	DNA damage-inducible protein DinB	NA	NA	NA	NA
WP_012748937.1\|197388_198075_+	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	3.2e-48	50.2
WP_012748938.1\|198583_200545_-	LTA synthase family protein	W6LM83	Streptococcus_phage	8.6e-139	44.9
WP_156779777.1\|200943_201138_+	hypothetical protein	NA	NA	NA	NA
WP_012748939.1\|201560_202229_+	sporulation membrane protein YtaF	NA	NA	NA	NA
WP_012748940.1\|202332_203289_+	sporulation protein	NA	NA	NA	NA
WP_012748941.1\|203573_204395_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_012748942.1\|204442_205042_-	response regulator transcription factor	NA	NA	NA	NA
WP_012748943.1\|205013_207095_-	histidine kinase	NA	NA	NA	NA
WP_012748944.1\|207265_207664_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.0e-51	72.0
WP_012748945.1\|207676_208786_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	9.0e-85	48.3
WP_012748948.1\|210086_211535_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_012748950.1\|212323_213763_+	hypothetical protein	NA	NA	NA	NA
WP_012748951.1\|214243_215311_+\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	1.4e-10	23.7
WP_012748952.1\|216321_216915_+	hypothetical protein	NA	NA	NA	NA
WP_012748953.1\|217308_218382_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_012748954.1\|218729_219452_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_012748955.1\|219463_220060_+	DedA family protein	NA	NA	NA	NA
WP_012748956.1\|220072_221212_+	galactosyldiacylglycerol synthase	NA	NA	NA	NA
WP_012748957.1\|221361_222456_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_041269554.1\|222473_223850_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_083767423.1\|223930_224653_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012748960.1\|224744_226145_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.5e-64	36.7
WP_012748961.1\|226241_226859_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012748962.1\|226918_227278_+	holo-ACP synthase	NA	NA	NA	NA
WP_012748963.1\|227359_228373_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_012748964.1\|228597_229761_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.9e-32	31.7
WP_003253419.1\|229889_230171_+	hypothetical protein	NA	NA	NA	NA
WP_003253417.1\|230175_230526_+	type II toxin-antitoxin system endoribonuclease NdoA	A0A2P0ZKX3	Lactobacillus_phage	2.0e-14	38.6
WP_012748965.1\|230836_233023_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_012748966.1\|233017_233131_-	cortex morphogenetic protein CmpA	NA	NA	NA	NA
WP_012748967.1\|233219_233687_+	SprT family protein	NA	NA	NA	NA
WP_012748968.1\|241510_241969_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_012748969.1\|241965_242706_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_012748970.1\|242665_243118_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_012748971.1\|243114_244128_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.0e-68	41.9
WP_012748948.1\|244466_245915_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_012748972.1\|246134_247382_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	36.9
WP_012748973.1\|247627_249562_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	4.2e-61	33.3
WP_012748974.1\|249686_250208_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_012748975.1\|250197_250845_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_012748853.1\|250878_252066_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_012748976.1\|252228_252384_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_012748977.1\|252404_253151_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_012748978.1\|253165_253348_-	YdiK family protein	NA	NA	NA	NA
WP_012748979.1\|253352_254087_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012748980.1\|254366_254651_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	2.2e-19	53.8
WP_012748981.1\|254733_256353_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.4e-163	58.6
WP_012748982.1\|256613_257852_-	cation:proton antiporter	NA	NA	NA	NA
WP_012748983.1\|257861_258356_-	cation:proton antiporter regulatory subunit	NA	NA	NA	NA
WP_012748984.1\|258786_259869_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	5.3e-82	48.2
WP_083767424.1\|259915_260959_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_012748985.1\|260952_263139_+	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_012748986.1\|263342_264881_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	5.0e-17	28.3
WP_012748987.1\|265175_266501_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.6e-51	32.2
WP_012748988.1\|266587_267130_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012748989.1\|267236_267680_-	NisI/SpaI family lantibiotic immunity lipoprotein	NA	NA	NA	NA
WP_012748990.1\|267732_268521_-	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA
WP_012748991.1\|268522_269269_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA
WP_012748992.1\|269283_269982_-	lantibiotic protection ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-55	49.3
WP_003253340.1\|270314_271016_+	response regulator transcription factor	NA	NA	NA	NA
WP_012748994.1\|271441_272815_-\|transposase	IS1380-like element ISGsp2 family transposase	NA	NA	NA	NA
WP_012748995.1\|273364_275023_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_012748996.1\|275491_276859_-\|transposase	ISLre2-like element ISGsp3 family transposase	NA	NA	NA	NA
WP_012748997.1\|277354_278233_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_156779778.1\|284571_284712_+	hypothetical protein	NA	NA	NA	NA
WP_012748998.1\|285272_285710_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_012748853.1\|285921_287109_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_012748999.1\|287453_287942_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.6e-22	43.0
WP_083767466.1\|287928_289080_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_012749001.1\|289076_290372_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.9e-18	34.8
WP_012749002.1\|290449_291178_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	4.1e-46	42.6
WP_012749003.1\|291165_291420_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FKD5	Synechococcus_phage	1.2e-05	37.0
WP_012749004.1\|291416_292103_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012749005.1\|292086_294315_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.6e-168	42.1
WP_012749006.1\|294290_295703_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.6e-48	32.9
WP_012749007.1\|295719_296760_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	5.3e-71	44.4
WP_012749008.1\|296756_297341_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.3e-28	37.8
WP_012749009.1\|297340_298879_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.9e-78	53.3

DBSCAN-SWA_2

310184 : 382835

Bacteriophage(25.0%)

transposase,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012749019.1\|310184_311432_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	7.1e-62	37.1
WP_012749020.1\|311567_313115_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012749021.1\|313241_313565_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_012749022.1\|313561_315313_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.1e-156	55.7
WP_012749023.1\|316865_318089_+	erythromycin esterase family protein	NA	NA	NA	NA
WP_012749025.1\|318543_318993_+	hut operon transcriptional regulator HutP	NA	NA	NA	NA
WP_012749026.1\|319106_320633_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	3.9e-94	40.2
WP_012749027.1\|321472_322276_-	VOC family protein	NA	NA	NA	NA
WP_012749028.1\|322281_323364_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	5.3e-82	48.2
WP_012749029.1\|323527_324109_-	hypothetical protein	NA	NA	NA	NA
WP_012749030.1\|324302_324593_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_012749031.1\|324606_326067_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_041269560.1\|326080_327511_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_012749033.1\|327868_328882_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_012749034.1\|329043_331032_+	TRAP transporter permease	NA	NA	NA	NA
WP_012749035.1\|331163_332546_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_012749036.1\|332589_333438_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_156779779.1\|333634_333796_+	hypothetical protein	NA	NA	NA	NA
WP_012749037.1\|333959_334274_+	hypothetical protein	NA	NA	NA	NA
WP_012749040.1\|335349_335985_-	ABC transporter permease	NA	NA	NA	NA
WP_012749041.1\|335999_337127_-\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-28	34.6
WP_012749042.1\|337157_338060_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012749043.1\|338515_338956_-	hypothetical protein	NA	NA	NA	NA
WP_012749044.1\|339100_340597_+	TIGR02677 family protein	NA	NA	NA	NA
WP_012749045.1\|340600_341767_+	TIGR02678 family protein	NA	NA	NA	NA
WP_012749046.1\|341756_345887_+	TIGR02680 family protein	NA	NA	NA	NA
WP_012749047.1\|345883_347161_+	TIGR02679 family protein	NA	NA	NA	NA
WP_012749048.1\|347505_348543_+	P1 family peptidase	NA	NA	NA	NA
WP_041269791.1\|350426_352145_+	TIGR02556 family CRISPR-associated protein	NA	NA	NA	NA
WP_012749050.1\|352146_353103_+	type I-B CRISPR-associated protein Cas7/Csh2	NA	NA	NA	NA
WP_012749051.1\|353118_353856_+	type I-B CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_012749052.1\|353860_356194_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_012749053.1\|356215_356713_+	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_012749054.1\|356715_357717_+	type I-B CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_012749055.1\|357726_357990_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_012749056.1\|358004_358754_+	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_012749057.1\|361724_362924_+	CRISPR-associated protein	NA	NA	NA	NA
WP_012749058.1\|362929_364243_+	TIGR02221 family CRISPR-associated protein	NA	NA	NA	NA
WP_012749059.1\|364268_365174_+	type III-B CRISPR module RAMP protein Cmr1	NA	NA	NA	NA
WP_012749060.1\|365170_366817_+	type III-B CRISPR-associated protein Cas10/Cmr2	NA	NA	NA	NA
WP_012749061.1\|366813_367941_+	type III-B CRISPR module-associated protein Cmr3	NA	NA	NA	NA
WP_012749062.1\|367940_368819_+	type III-B CRISPR module RAMP protein Cmr4	NA	NA	NA	NA
WP_012749063.1\|368837_369221_+	type III-B CRISPR module-associated protein Cmr5	NA	NA	NA	NA
WP_012749064.1\|369241_370381_+	type III-B CRISPR module RAMP protein Cmr6	NA	NA	NA	NA
WP_012749065.1\|371794_372328_+	hypothetical protein	NA	NA	NA	NA
WP_012749067.1\|373435_374509_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	2.0e-41	46.5
WP_012749068.1\|374498_375290_+	ABC transporter permease	NA	NA	NA	NA
WP_012749069.1\|375300_376107_+	ABC transporter permease	NA	NA	NA	NA
WP_012749070.1\|376103_377177_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012749072.1\|377528_378776_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	37.1
WP_012748853.1\|380062_381250_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_012749074.1\|381668_382835_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7

DBSCAN-SWA_3

488519 : 553032

Planktothrix_phage(28.57%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748853.1\|488519_489707_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_156779781.1\|489740_490154_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012749164.1\|491627_491816_+	hypothetical protein	NA	NA	NA	NA
WP_012749165.1\|491880_493404_-	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_012749166.1\|493710_494358_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_012749167.1\|494672_494990_+	DUF3870 domain-containing protein	NA	NA	NA	NA
WP_041269573.1\|495022_496231_-	butyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_012749169.1\|496227_497391_-	CoA transferase	NA	NA	NA	NA
WP_156779797.1\|497695_499702_-	penicillin-binding transpeptidase domain-containing protein	NA	NA	NA	NA
WP_012749171.1\|500251_501688_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_012749172.1\|501788_502046_+	hypothetical protein	NA	NA	NA	NA
WP_012749173.1\|503051_503615_+	peroxiredoxin	NA	NA	NA	NA
WP_012749174.1\|503627_505157_+	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	2.7e-39	31.4
WP_012749175.1\|506782_507610_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_041269575.1\|507639_507828_-	YfhD family protein	NA	NA	NA	NA
WP_012749177.1\|507916_508045_-	YfhE family protein	NA	NA	NA	NA
WP_012749178.1\|508145_508697_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012749179.1\|509319_510402_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	2.0e-81	48.2
WP_012749180.1\|511223_512039_+	recombination regulator RecX	NA	NA	NA	NA
WP_012749181.1\|512035_512365_+	YfhH family protein	NA	NA	NA	NA
WP_012749182.1\|512410_512572_-	YpzG family protein	NA	NA	NA	NA
WP_012749183.1\|512604_512766_-	small, acid-soluble spore protein K	NA	NA	NA	NA
WP_041269804.1\|512883_513153_+	hypothetical protein	NA	NA	NA	NA
WP_012749185.1\|513190_514171_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_012749186.1\|514362_514854_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_012749187.1\|514846_517810_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_012749188.1\|518084_518432_+	DUF2294 domain-containing protein	NA	NA	NA	NA
WP_012749189.1\|518711_519500_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_012749190.1\|519516_520791_+	OFA family MFS transporter	NA	NA	NA	NA
WP_012749191.1\|520935_522036_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_012749192.1\|522046_522271_-	hypothetical protein	NA	NA	NA	NA
WP_012749193.1\|522339_523089_+	enoyl-[acyl-carrier-protein] reductase FabL	NA	NA	NA	NA
WP_012749194.1\|523147_523333_+	gamma-type small acid-soluble spore protein	NA	NA	NA	NA
WP_012749195.1\|523757_525005_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	8.4e-63	37.4
WP_012749196.1\|525195_525468_+	hypothetical protein	NA	NA	NA	NA
WP_012749197.1\|525549_526083_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_012749198.1\|526157_527912_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-56	31.7
WP_012749199.1\|528317_529691_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_012749200.1\|529913_530939_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-17	32.2
WP_012749201.1\|530904_531870_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-23	35.1
WP_041269806.1\|531922_533527_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012749203.1\|533594_534599_+	ABC transporter permease	NA	NA	NA	NA
WP_012749204.1\|534618_535518_+	ABC transporter permease	NA	NA	NA	NA
WP_012749205.1\|535555_536617_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_012749206.1\|537806_539066_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_156779782.1\|539139_543609_-	glutamate synthase	NA	NA	NA	NA
WP_012749208.1\|543861_545157_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_012749209.1\|545269_546274_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	5.8e-22	31.8
WP_012749210.1\|546266_547058_+	daunorubicin ABC transporter permease	NA	NA	NA	NA
WP_012749211.1\|547061_547847_+	ABC transporter permease	NA	NA	NA	NA
WP_012749212.1\|548155_549115_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_012749213.1\|549152_550778_+	L-lactate permease	NA	NA	NA	NA
WP_041269576.1\|550881_551505_-	hypothetical protein	NA	NA	NA	NA
WP_012748845.1\|551718_553032_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

577638 : 643780

Streptococcus_phage(33.33%)

transposase,integrase

attL 582159:582176|attR 625353:625370

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748994.1\|577638_579012_-\|transposase	IS1380-like element ISGsp2 family transposase	NA	NA	NA	NA
WP_012749229.1\|579258_580416_+	sporulation protein YhbH	X2JIL8	Bacillus_phage	3.8e-25	45.8
WP_156482456.1\|580584_580752_+	hypothetical protein	NA	NA	NA	NA
WP_012749230.1\|581423_582212_-	hypothetical protein	NA	NA	NA	NA
582159:582176	attL	NA	NA	NA	NA
WP_012749232.1\|582664_583642_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012749233.1\|583652_584336_-	response regulator	NA	NA	NA	NA
WP_041269809.1\|584347_585925_-	sensor histidine kinase	W8CYF6	Bacillus_phage	5.7e-08	24.8
WP_012749235.1\|586038_587070_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_012749236.1\|587228_588494_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_012749237.1\|588794_589409_+	NAD(P)H:quinone oxidoreductase	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	3.5e-06	29.1
WP_012749238.1\|589516_590344_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	4.0e-77	52.2
WP_012749239.1\|590538_591225_+	zinc metallopeptidase	NA	NA	NA	NA
WP_012749240.1\|591285_592632_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_012749241.1\|592659_593574_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_012749242.1\|593705_594104_+	YhcU family protein	NA	NA	NA	NA
WP_012749243.1\|594134_594611_-	thioredoxin family protein	NA	NA	NA	NA
WP_012749244.1\|594607_595048_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_012749245.1\|595194_596883_+	alpha-glucosidase	NA	NA	NA	NA
WP_012749246.1\|596987_597431_+	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	4.3e-14	37.1
WP_012749247.1\|597530_599279_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.1e-164	49.7
WP_012749248.1\|599653_600736_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	1.2e-81	48.2
WP_012749249.1\|602608_603139_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_012749250.1\|603827_604079_-	hypothetical protein	NA	NA	NA	NA
WP_097354921.1\|604201_604747_-	DedA family protein	NA	NA	NA	NA
WP_012749252.1\|606628_608497_+	ATPase AAA	NA	NA	NA	NA
WP_012749253.1\|608835_610272_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1X9I6E7	Streptococcus_phage	9.8e-07	25.6
WP_012749255.1\|610813_611395_+\|transposase	transposase	NA	NA	NA	NA
WP_011230081.1\|611712_612186_+	hypothetical protein	NA	NA	NA	NA
WP_012749256.1\|612322_613045_+	iron permease	NA	NA	NA	NA
WP_011230084.1\|613336_613645_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011230085.1\|613659_614607_+	cation transporter	NA	NA	NA	NA
WP_011230086.1\|614632_615679_+	SidA/IucD/PvdA family monooxygenase	A0A2H4J2Q2	uncultured_Caudovirales_phage	7.6e-17	25.0
WP_011230088.1\|616865_617234_+	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	1.8e-50	78.7
WP_012749257.1\|617226_619365_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	0.0e+00	84.8
WP_041269580.1\|621136_622558_+	SpoVR family protein	NA	NA	NA	NA
WP_012749259.1\|623109_624459_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_012749260.1\|624455_625469_+	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA
625353:625370	attR	NA	NA	NA	NA
WP_041269581.1\|625733_626123_+	sulfur reduction protein DsrE	NA	NA	NA	NA
WP_012749263.1\|626136_626370_+	glutaredoxin family protein	NA	NA	NA	NA
WP_041269582.1\|626468_626666_+	hypothetical protein	NA	NA	NA	NA
WP_012749264.1\|626690_627257_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012749265.1\|627391_627793_+	rhodanese	NA	NA	NA	NA
WP_012749266.1\|627759_628020_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_003252677.1\|628111_628339_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_012749267.1\|628395_628878_+	hypothetical protein	NA	NA	NA	NA
WP_012749268.1\|628890_629256_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_012749269.1\|629275_629572_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_012749270.1\|629599_630169_+	hypothetical protein	NA	NA	NA	NA
WP_012749271.1\|630216_631353_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012749272.1\|631372_631600_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_012749273.1\|631663_632458_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012749274.1\|632562_632853_+	hypothetical protein	NA	NA	NA	NA
WP_012749275.1\|633096_634137_+	zinc-dependent alcohol dehydrogenase family protein	E3SJ82	Synechococcus_phage	3.9e-13	24.7
WP_012749276.1\|634932_635235_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012749277.1\|635572_636523_+	LLM class oxidoreductase	NA	NA	NA	NA
WP_012749278.1\|637062_638457_+	acetaldehyde dehydrogenase (acetylating)	NA	NA	NA	NA
WP_012749279.1\|638762_640421_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_012749280.1\|641782_642208_-	NUDIX hydrolase	NA	NA	NA	NA
WP_012749281.1\|642310_643780_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

867569 : 924252

Geobacillus_virus(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012749488.1\|867569_868760_+\|transposase	ISL3 family transposase	A0A0A8WEF4	Clostridium_phage	3.4e-29	25.2
WP_012749489.1\|869557_871045_-	PH domain-containing protein	NA	NA	NA	NA
WP_012749490.1\|871041_871530_-	PH domain-containing protein	NA	NA	NA	NA
WP_041269831.1\|873370_873703_+	hypothetical protein	NA	NA	NA	NA
WP_012749492.1\|874001_875462_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_012749493.1\|875808_876261_+	OsmC family protein	NA	NA	NA	NA
WP_012749494.1\|876286_877219_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_041269595.1\|877335_878595_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_012749074.1\|878915_880082_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_012749496.1\|880385_881327_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_012749497.1\|881592_881937_+	hypothetical protein	NA	NA	NA	NA
WP_012748853.1\|882849_884037_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_012749498.1\|884168_885632_-\|transposase	transposase	A0A0H3UZK2	Geobacillus_virus	2.2e-211	75.2
WP_041269597.1\|886515_886914_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_012749500.1\|886926_887286_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_012749501.1\|887354_888107_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_012749502.1\|888125_888557_+	threonine/serine exporter	NA	NA	NA	NA
WP_012749503.1\|888743_889913_+	amidohydrolase	NA	NA	NA	NA
WP_012749504.1\|889887_890712_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012749505.1\|890728_891844_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_012749506.1\|892025_893567_-	cation acetate symporter	NA	NA	NA	NA
WP_012749507.1\|893566_893908_-	DUF485 domain-containing protein	NA	NA	NA	NA
WP_012749498.1\|894685_896149_+\|transposase	transposase	A0A0H3UZK2	Geobacillus_virus	2.2e-211	75.2
WP_012749508.1\|896393_897824_+	amino acid permease	NA	NA	NA	NA
WP_012749509.1\|897990_898728_+	RNA polymerase sigma factor SigI	NA	NA	NA	NA
WP_012749510.1\|898724_899774_+	anti-sigma factor domain-containing protein	NA	NA	NA	NA
WP_012749511.1\|900017_900227_-	alpha/beta-type small acid-soluble spore protein	A0A1P8CX76	Bacillus_phage	2.9e-13	65.6
WP_012749512.1\|900723_901068_-	DUF3905 domain-containing protein	NA	NA	NA	NA
WP_012749516.1\|901626_903399_-	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA
WP_012749517.1\|903594_905829_+	PAS domain S-box protein	Q6XLU9	Feldmannia_irregularis_virus	1.3e-05	22.0
WP_012749518.1\|905803_906301_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2K9L300	Tupanvirus	1.9e-18	50.0
WP_012749519.1\|906478_907489_-	ABC transporter permease	NA	NA	NA	NA
WP_012749520.1\|907433_908981_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-16	29.9
WP_012749521.1\|908977_910123_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012749522.1\|910109_911180_-	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_012749523.1\|911202_912405_-	S-methyl-5-thioribose kinase	NA	NA	NA	NA
WP_012749524.1\|912743_913559_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA
WP_012749525.1\|913659_914832_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_012749526.1\|915113_916355_+	2,3-diketo-5-methylthiopentyl-1-phosphate enolase	NA	NA	NA	NA
WP_012749527.1\|916351_917011_+	2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase	NA	NA	NA	NA
WP_012749528.1\|917007_917649_+	methylthioribulose 1-phosphate dehydratase	NA	NA	NA	NA
WP_012749529.1\|917672_918215_+	cupin domain-containing protein	NA	NA	NA	NA
WP_012749530.1\|918257_918989_-	ZIP family metal transporter	NA	NA	NA	NA
WP_012749531.1\|919273_919717_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041269833.1\|919809_920373_+	phosphate propanoyltransferase	NA	NA	NA	NA
WP_012749533.1\|920414_922427_-	S9 family peptidase	NA	NA	NA	NA
WP_012749534.1\|923004_924252_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	5.3e-57	38.1

DBSCAN-SWA_6

930386 : 975575

Yersinia_phage(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012749092.1\|930386_931667_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_082798116.1\|932454_932892_+	ABC transporter permease	NA	NA	NA	NA
WP_012749538.1\|932903_933572_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012749541.1\|935924_936677_+	hypothetical protein	NA	NA	NA	NA
WP_012749542.1\|936707_936953_+	hypothetical protein	NA	NA	NA	NA
WP_012749543.1\|937248_938616_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_012749544.1\|939001_940438_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_012749546.1\|940867_941746_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_012749547.1\|941946_942837_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_012749548.1\|943291_943639_+	hypothetical protein	NA	NA	NA	NA
WP_083767429.1\|945407_946463_+	hypothetical protein	NA	NA	NA	NA
WP_012749550.1\|946881_947937_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_012749551.1\|948258_949680_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_012749552.1\|950071_950617_-	hypothetical protein	NA	NA	NA	NA
WP_012749553.1\|950860_953038_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2C9CYX3	Yersinia_phage	8.4e-127	40.2
WP_012749554.1\|953251_953974_+	FixH family protein	NA	NA	NA	NA
WP_012749555.1\|954072_955116_+	membrane protein	NA	NA	NA	NA
WP_012749556.1\|955372_956887_+	spore germination protein	NA	NA	NA	NA
WP_012749557.1\|956901_958347_+	GerAB/ArcD/ProY family transporter	NA	NA	NA	NA
WP_012749558.1\|958541_959207_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-67	56.8
WP_012749559.1\|959203_959638_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_041269599.1\|959640_960372_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.1e-61	47.6
WP_012749561.1\|961330_961507_-	DUF2187 domain-containing protein	NA	NA	NA	NA
WP_012749562.1\|961639_962233_-	LysM peptidoglycan-binding domain-containing protein	A0A172JHR8	Bacillus_phage	3.9e-42	50.3
WP_012749563.1\|962412_962607_-	hypothetical protein	NA	NA	NA	NA
WP_015863249.1\|962781_963390_+	hypothetical protein	NA	NA	NA	NA
WP_015863250.1\|963757_964003_+	hypothetical protein	NA	NA	NA	NA
WP_041269602.1\|964245_964536_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_015863251.1\|964591_965230_-	nitroreductase family protein	NA	NA	NA	NA
WP_156779784.1\|965363_965609_+	hypothetical protein	NA	NA	NA	NA
WP_015863253.1\|966124_966886_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_015863254.1\|966978_967785_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_015863255.1\|967967_968825_+	transcription antiterminator	NA	NA	NA	NA
WP_012749415.1\|969193_970474_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015863256.1\|970872_972900_+	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	7.1e-11	48.6
WP_041269604.1\|973000_973267_+	phosphocarrier protein HPr	NA	NA	NA	NA
WP_015863258.1\|973266_974988_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_015863259.1\|975017_975575_-\|protease	spore protease YyaC	G3M9W0	Bacillus_virus	1.9e-19	37.7

DBSCAN-SWA_7

1292586 : 1352274

Bacillus_phage(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015863565.1\|1292586_1293834_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	3.2e-62	37.1
WP_015863566.1\|1293982_1295989_+	transketolase	NA	NA	NA	NA
WP_015863567.1\|1296145_1296583_+	sporulation inhibitor of replication protein SirA	NA	NA	NA	NA
WP_015863568.1\|1296670_1296883_+	YneF family protein	NA	NA	NA	NA
WP_015863569.1\|1296996_1298766_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.2e-51	30.4
WP_015863570.1\|1298747_1300532_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-51	29.2
WP_015863571.1\|1300548_1300725_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_015863572.1\|1300895_1301603_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_015863573.1\|1301635_1301992_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	1.6e-06	29.8
WP_015863574.1\|1302068_1302551_+	cytochrome c biogenesis protein CcdC	NA	NA	NA	NA
WP_015863575.1\|1302600_1303035_-	DUF2621 family protein	NA	NA	NA	NA
WP_015863576.1\|1303296_1303965_+	LysM peptidoglycan-binding domain-containing protein	A0A141HRV8	Bacillus_phage	1.5e-26	39.8
WP_012748996.1\|1304545_1305913_+\|transposase	ISLre2-like element ISGsp3 family transposase	NA	NA	NA	NA
WP_015863577.1\|1305930_1306242_-	hypothetical protein	NA	NA	NA	NA
WP_015863578.1\|1306333_1306480_-	small acid-soluble spore protein P	NA	NA	NA	NA
WP_015863579.1\|1306605_1306866_+	hypothetical protein	NA	NA	NA	NA
WP_015863580.1\|1307233_1308316_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_015863581.1\|1308582_1311309_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_015863582.1\|1311350_1311488_-	small, acid-soluble spore protein L	NA	NA	NA	NA
WP_015863583.1\|1311552_1312491_-	DMT family transporter	NA	NA	NA	NA
WP_041269622.1\|1312783_1313449_+	reverse transcriptase-like protein	NA	NA	NA	NA
WP_015863585.1\|1313457_1313676_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_015863586.1\|1313713_1313974_-	DUF2564 family protein	NA	NA	NA	NA
WP_015863587.1\|1314104_1314305_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	2.1e-16	58.7
WP_015863588.1\|1314637_1314889_+	hypothetical protein	NA	NA	NA	NA
WP_015863589.1\|1315257_1315656_+	sporulation protein SpoOM	NA	NA	NA	NA
WP_015863590.1\|1315897_1316725_+	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	9.5e-31	33.7
WP_015863591.1\|1316744_1318235_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_015863592.1\|1318569_1319592_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.5e-21	31.1
WP_015863593.1\|1319578_1320505_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.7e-21	35.2
WP_015863594.1\|1320523_1321492_+	ABC transporter permease	NA	NA	NA	NA
WP_015863595.1\|1321508_1322411_+	ABC transporter permease	NA	NA	NA	NA
WP_015863596.1\|1322426_1324208_+	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015863597.1\|1324497_1324830_+	hypothetical protein	NA	NA	NA	NA
WP_015863598.1\|1324857_1325241_+	VOC family protein	NA	NA	NA	NA
WP_015863599.1\|1325258_1326326_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_041269624.1\|1326441_1326924_+	PaaI family thioesterase	NA	NA	NA	NA
WP_015863601.1\|1327850_1328828_+	formimidoylglutamase	NA	NA	NA	NA
WP_015863602.1\|1328834_1330313_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015863603.1\|1330716_1331964_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	5.4e-62	36.9
WP_015863604.1\|1332065_1333724_+	urocanate hydratase	NA	NA	NA	NA
WP_015863605.1\|1333742_1335017_+	imidazolonepropionase	NA	NA	NA	NA
WP_015863606.1\|1335110_1336439_+	YjiH family protein	NA	NA	NA	NA
WP_015863607.1\|1336494_1336890_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_015863608.1\|1337095_1338469_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_015863609.1\|1338779_1340006_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_015863610.1\|1340574_1341828_+	AAA family ATPase	NA	NA	NA	NA
WP_015863611.1\|1342700_1343915_+	hypothetical protein	NA	NA	NA	NA
WP_015863612.1\|1344304_1345984_+	DUF3578 domain-containing protein	NA	NA	NA	NA
WP_015863613.1\|1345952_1348463_+	DUF2357 domain-containing protein	NA	NA	NA	NA
WP_015863614.1\|1348492_1348822_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_041269625.1\|1349141_1350767_+	AAA family ATPase	NA	NA	NA	NA
WP_015863615.1\|1350825_1352274_+\|transposase	IS66 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1372096 : 1443789

Bacteriophage(28.57%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015863625.1\|1372096_1372948_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_015863626.1\|1373032_1373542_+	hypothetical protein	NA	NA	NA	NA
WP_015863627.1\|1374428_1375217_+	NERD nuclease	A0A2R2ZH57	Clostridioides_phage	4.4e-25	30.9
WP_015863628.1\|1375270_1375894_+	hypothetical protein	NA	NA	NA	NA
WP_041269627.1\|1376110_1376848_+	hypothetical protein	NA	NA	NA	NA
WP_015863630.1\|1376834_1377407_+	hypothetical protein	NA	NA	NA	NA
WP_015863631.1\|1377461_1377716_+	hypothetical protein	NA	NA	NA	NA
WP_041269628.1\|1378994_1379237_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015863634.1\|1379408_1380806_-	GABA permease	NA	NA	NA	NA
WP_015863635.1\|1381250_1382864_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_041269629.1\|1383064_1384531_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_015863637.1\|1384660_1386013_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_041269630.1\|1386975_1387452_+	hypothetical protein	NA	NA	NA	NA
WP_041269860.1\|1387708_1388275_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_015863640.1\|1388383_1388749_-	hypothetical protein	NA	NA	NA	NA
WP_012749092.1\|1389728_1391009_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015863641.1\|1392180_1393428_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	2.4e-62	37.1
WP_015863642.1\|1393593_1395711_+	SEC-C motif domain-containing protein	NA	NA	NA	NA
WP_015863643.1\|1395940_1396111_+	hypothetical protein	NA	NA	NA	NA
WP_015863645.1\|1396350_1399152_-	DEAD/DEAH box helicase	E7DNC5	Pneumococcus_phage	5.2e-28	25.2
WP_015863646.1\|1399148_1400762_-	hypothetical protein	NA	NA	NA	NA
WP_012749072.1\|1400931_1402179_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	37.1
WP_015863647.1\|1402299_1402572_+	DUF3986 family protein	NA	NA	NA	NA
WP_015863648.1\|1402637_1403240_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_015863640.1\|1403348_1403714_-	hypothetical protein	NA	NA	NA	NA
WP_015863650.1\|1405266_1406571_-	acetamidase/formamidase family protein	NA	NA	NA	NA
WP_015863651.1\|1406777_1406972_+	hypothetical protein	NA	NA	NA	NA
WP_015863652.1\|1406952_1408365_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_015863653.1\|1408768_1409761_+	acryloyl-CoA reductase	NA	NA	NA	NA
WP_041269631.1\|1410227_1411223_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_015863655.1\|1411242_1411857_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_015863656.1\|1411871_1412267_+	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA
WP_015863657.1\|1412707_1413610_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015863658.1\|1413734_1418297_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_015863659.1\|1418499_1419981_+	glutamate synthase subunit beta	NA	NA	NA	NA
WP_015863660.1\|1420286_1420742_+	OsmC family protein	NA	NA	NA	NA
WP_015863661.1\|1421079_1421310_-	molybdopterin converting factor subunit 1	NA	NA	NA	NA
WP_015863662.1\|1421306_1421777_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
WP_015863663.1\|1422173_1423196_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_015863664.1\|1424005_1424488_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_049756985.1\|1424911_1426231_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	6.6e-50	31.3
WP_015863665.1\|1428614_1428992_+	hypothetical protein	NA	NA	NA	NA
WP_015863666.1\|1428999_1429428_+	hypothetical protein	A0A1P8DJD6	Virus_Rctr71	1.0e-15	42.1
WP_015863668.1\|1431772_1432411_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_015863669.1\|1432713_1434825_+	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_015863670.1\|1435253_1436978_+	serine hydrolase	NA	NA	NA	NA
WP_015863671.1\|1436997_1439094_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_015863673.1\|1440425_1441616_-\|transposase	ISL3 family transposase	A0A0A8WEF4	Clostridium_phage	1.8e-30	25.2
WP_012749092.1\|1442508_1443789_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1457380 : 1528593

Clostridium_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015863684.1\|1457380_1458247_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_041269868.1\|1458825_1459413_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_015863686.1\|1459399_1460506_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.9e-30	36.8
WP_015863687.1\|1460502_1461429_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_015863688.1\|1461425_1462238_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_015863689.1\|1462256_1463594_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015863690.1\|1463737_1464466_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	7.6e-16	32.6
WP_015863691.1\|1464676_1466008_-	amino acid permease	NA	NA	NA	NA
WP_015863692.1\|1466239_1467985_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_015863693.1\|1468546_1469446_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_015863695.1\|1469882_1470623_+	metal ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.3e-15	28.6
WP_015863696.1\|1470629_1471685_+	metal ABC transporter permease	NA	NA	NA	NA
WP_015863697.1\|1471681_1472560_+	metal ABC transporter permease	NA	NA	NA	NA
WP_015863699.1\|1472995_1474243_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	3.2e-62	36.9
WP_041269636.1\|1474295_1475141_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_012748845.1\|1475232_1476546_+\|transposase	transposase	NA	NA	NA	NA
WP_015863700.1\|1476968_1477955_+	restriction endonuclease	NA	NA	NA	NA
WP_015863701.1\|1478673_1480803_+	BglG family transcription antiterminator	NA	NA	NA	NA
WP_015863702.1\|1480822_1481266_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_015863703.1\|1481262_1481541_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_015863704.1\|1481553_1482849_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_015863705.1\|1482951_1483944_+	phosphotriesterase	NA	NA	NA	NA
WP_015863706.1\|1483953_1484685_+	creatininase family protein	NA	NA	NA	NA
WP_015863707.1\|1484671_1485400_+	oxo-acid lyase	NA	NA	NA	NA
WP_015863708.1\|1485396_1486140_+	SIS domain-containing protein	NA	NA	NA	NA
WP_015863608.1\|1486779_1488153_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_012749221.1\|1489943_1491311_-\|transposase	ISLre2-like element ISGsp3 family transposase	NA	NA	NA	NA
WP_015863711.1\|1492871_1493126_+	hypothetical protein	A0A0A8WF72	Clostridium_phage	5.2e-12	43.6
WP_015863712.1\|1493115_1493502_+	hypothetical protein	A0A0A8WIU2	Clostridium_phage	9.9e-15	37.9
WP_015863713.1\|1494510_1494960_-	hypothetical protein	NA	NA	NA	NA
WP_015863714.1\|1495070_1496195_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_012748845.1\|1498928_1500242_+\|transposase	transposase	NA	NA	NA	NA
WP_015863716.1\|1500531_1501980_-\|transposase	IS66-like element ISBst12 family transposase	NA	NA	NA	NA
WP_083767432.1\|1502289_1503828_+	malate:quinone oxidoreductase	NA	NA	NA	NA
WP_015863673.1\|1504267_1505458_-\|transposase	ISL3 family transposase	A0A0A8WEF4	Clostridium_phage	1.8e-30	25.2
WP_015863719.1\|1507444_1508857_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_015863720.1\|1510335_1510626_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_082798132.1\|1510652_1510817_+	DUF4937 domain-containing protein	NA	NA	NA	NA
WP_015863721.1\|1511152_1512313_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_015863722.1\|1512823_1513621_+	ABC transporter permease	NA	NA	NA	NA
WP_015863723.1\|1513620_1514298_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015863724.1\|1514701_1516027_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_012748925.1\|1516428_1517511_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_041269642.1\|1518337_1519108_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_015863727.1\|1519552_1520383_+	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_083767433.1\|1520542_1522096_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_049756987.1\|1522116_1522737_+	EamA family transporter	NA	NA	NA	NA
WP_049756988.1\|1525029_1527024_-	molybdopterin oxidoreductase family protein	A0A077SK27	Escherichia_phage	3.8e-49	27.7
WP_015863729.1\|1527144_1528593_-\|transposase	IS66-like element ISBst12 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1556167 : 1628332

Bacillus_virus(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748996.1\|1556167_1557535_+\|transposase	ISLre2-like element ISGsp3 family transposase	NA	NA	NA	NA
WP_015863752.1\|1557800_1558814_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_015863753.1\|1558835_1560380_+	gluconokinase	NA	NA	NA	NA
WP_015863754.1\|1560429_1561779_+	GntP family permease	NA	NA	NA	NA
WP_015863755.1\|1561816_1562302_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015863757.1\|1562816_1564256_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_015863758.1\|1564368_1565133_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_015863759.1\|1565362_1565926_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_015863760.1\|1567159_1568182_+	AI-2E family transporter	NA	NA	NA	NA
WP_015863761.1\|1568257_1569967_-	PAS domain-containing protein	NA	NA	NA	NA
WP_015863762.1\|1570197_1571631_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_015863763.1\|1571650_1572499_+	N-acyl homoserine lactonase family protein	NA	NA	NA	NA
WP_015863764.1\|1572514_1573696_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_015863766.1\|1573963_1574155_-	Fur-regulated basic protein FbpA	NA	NA	NA	NA
WP_012748853.1\|1574331_1575519_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_015863767.1\|1575716_1576016_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_015863768.1\|1577333_1578269_+	endonuclease I	A0A2P0VMP9	Tetraselmis_virus	5.9e-13	33.0
WP_015863769.1\|1578297_1579257_-	bile acid:sodium symporter family protein	NA	NA	NA	NA
WP_015863770.1\|1579614_1579836_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_015863771.1\|1579839_1581837_+	ferrous iron transport protein B	NA	NA	NA	NA
WP_015863772.1\|1581888_1582074_+	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA
WP_015863773.1\|1582552_1583305_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_015863774.1\|1583301_1584213_+	1-phosphofructokinase	NA	NA	NA	NA
WP_015863775.1\|1584241_1586113_+	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_015863777.1\|1586743_1588402_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_133066516.1\|1589457_1590519_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_015863779.1\|1590964_1591855_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_015863780.1\|1592004_1592871_+	permease	NA	NA	NA	NA
WP_015863781.1\|1592885_1593731_+	TIGR03943 family protein	NA	NA	NA	NA
WP_015863782.1\|1593767_1594694_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_015863783.1\|1594785_1595187_+	hypothetical protein	NA	NA	NA	NA
WP_015863784.1\|1595390_1596140_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_015863785.1\|1596393_1597707_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.4e-15	26.1
WP_015863786.1\|1597907_1598183_+	hypothetical protein	NA	NA	NA	NA
WP_015863787.1\|1598378_1598624_+	hypothetical protein	NA	NA	NA	NA
WP_015863788.1\|1598741_1599542_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_015863789.1\|1599672_1600206_+	hemerythrin	NA	NA	NA	NA
WP_015863790.1\|1600279_1600984_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_041269648.1\|1600985_1601534_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_015863792.1\|1603008_1606692_-	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_015863793.1\|1606874_1607381_+	membrane protein	NA	NA	NA	NA
WP_083767435.1\|1608137_1609430_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015863795.1\|1609857_1610616_+	membrane protein insertase YidC	NA	NA	NA	NA
WP_015863796.1\|1611518_1612070_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.5e-35	43.1
WP_015863797.1\|1612128_1613604_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.8e-118	48.1
WP_083767436.1\|1613901_1615773_-	oligoendopeptidase F	NA	NA	NA	NA
WP_015863799.1\|1617428_1618709_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015863800.1\|1620606_1621092_+	RraA family protein	NA	NA	NA	NA
WP_015863801.1\|1621468_1621867_+	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_015863802.1\|1621863_1622604_+	energy-coupling factor ABC transporter permease	NA	NA	NA	NA
WP_015863803.1\|1622605_1622890_+	energy-coupling factor ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015863804.1\|1622886_1623603_+	cobalt ECF transporter T component CbiQ	NA	NA	NA	NA
WP_015863805.1\|1623620_1624463_+	ABC transporter ATP-binding protein	R4TX06	Phaeocystis_globosa_virus	3.1e-05	35.2
WP_015863806.1\|1624531_1626094_+	precorrin-3B C(17)-methyltransferase	NA	NA	NA	NA
WP_015863807.1\|1626109_1626943_+	sirohydrochlorin chelatase	NA	NA	NA	NA
WP_015863799.1\|1627051_1628332_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1650810 : 1716764

Virus_Rctr71(23.08%)

transposase,integrase

attL 1686623:1686637|attR 1719803:1719817

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748925.1\|1650810_1651893_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_015863831.1\|1652139_1652751_+	hypothetical protein	NA	NA	NA	NA
WP_015863832.1\|1652896_1653604_+	toxin	NA	NA	NA	NA
WP_015863833.1\|1653665_1654460_+	thymidylate synthase	A6M9A2	Geobacillus_virus	4.5e-147	91.7
WP_015863834.1\|1654472_1654961_+	dihydrofolate reductase	G3MBI7	Bacillus_virus	7.3e-39	48.5
WP_015863835.1\|1655064_1655505_+	YndM family protein	NA	NA	NA	NA
WP_015863836.1\|1655705_1656977_+	threonine ammonia-lyase IlvA	NA	NA	NA	NA
WP_015863837.1\|1657083_1657335_+	YpmP family protein	NA	NA	NA	NA
WP_015863580.1\|1657680_1658763_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_015863838.1\|1658893_1659736_+	DegV family protein	NA	NA	NA	NA
WP_015863839.1\|1659770_1660337_+	SCO family protein	NA	NA	NA	NA
WP_015863840.1\|1660415_1661210_+	lipase	NA	NA	NA	NA
WP_015863841.1\|1661206_1661782_+	YpmS family protein	NA	NA	NA	NA
WP_015863842.1\|1661810_1663175_-	NOL1/NOP2/sun family putative RNA methylase	NA	NA	NA	NA
WP_015863843.1\|1663216_1663810_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_015863844.1\|1664002_1664428_+	OsmC family protein	NA	NA	NA	NA
WP_015863845.1\|1665103_1666336_-	peptidase T	NA	NA	NA	NA
WP_015863846.1\|1666790_1667372_+	ECF transporter S component	NA	NA	NA	NA
WP_015863847.1\|1667903_1668509_-	sulfite oxidase-like oxidoreductase	NA	NA	NA	NA
WP_049757036.1\|1669320_1669611_+	hypothetical protein	NA	NA	NA	NA
WP_015863850.1\|1669752_1670181_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015863851.1\|1670182_1670680_+	GNAT family N-acetyltransferase	A0A1B2IAV9	Erwinia_phage	8.3e-06	34.1
WP_015863852.1\|1670697_1671195_+	hypothetical protein	NA	NA	NA	NA
WP_015863854.1\|1671425_1672508_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	1.6e-81	48.2
WP_015863855.1\|1672757_1673516_-	uridine phosphorylase	NA	NA	NA	NA
WP_015863856.1\|1674237_1674963_+	hypothetical protein	NA	NA	NA	NA
WP_015863857.1\|1675909_1677406_+	NADH dehydrogenase subunit 5	NA	NA	NA	NA
WP_015863858.1\|1677409_1680055_+	DUF2309 domain-containing protein	NA	NA	NA	NA
WP_015863859.1\|1680306_1680609_+	ATP synthase subunit B	NA	NA	NA	NA
WP_015863860.1\|1680662_1682336_+	AarF/ABC1/UbiB kinase family protein	A9YVW0	Ostreococcus_tauri_virus	8.9e-52	32.7
WP_012749221.1\|1684458_1685826_+\|transposase	ISLre2-like element ISGsp3 family transposase	NA	NA	NA	NA
1686623:1686637	attL	NA	NA	NA	NA
WP_015863861.1\|1687706_1688126_+	CoA-binding protein	NA	NA	NA	NA
WP_015863862.1\|1688273_1690244_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	2.8e-137	45.1
WP_015863863.1\|1690243_1692688_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.8e-108	32.8
WP_015863864.1\|1692725_1693430_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_015863865.1\|1693697_1695113_+	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_015863866.1\|1695230_1696922_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_041269658.1\|1696945_1697659_+	trehalose operon repressor	NA	NA	NA	NA
WP_015863868.1\|1697800_1699213_+	sodium:proton antiporter	NA	NA	NA	NA
WP_015863869.1\|1699418_1699850_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_015863870.1\|1699948_1701448_+	aminotransferase class V-fold PLP-dependent enzyme	A0A1V0SL42	Klosneuvirus	2.7e-60	33.5
WP_015863871.1\|1701519_1702683_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_015863872.1\|1702709_1703582_-	polyamine aminopropyltransferase	NA	NA	NA	NA
WP_015863873.1\|1703737_1704181_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_015863874.1\|1705672_1706644_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_015863875.1\|1706718_1707621_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_015863876.1\|1707778_1708153_+	replication terminator protein	A0A0K2CP62	Brevibacillus_phage	1.9e-15	41.2
WP_015863877.1\|1708319_1709192_+	MoxR family ATPase	R4TG24	Halovirus	1.5e-10	27.8
WP_015863878.1\|1709202_1711119_+	VWA domain-containing protein	NA	NA	NA	NA
WP_015863879.1\|1711138_1712377_+	oligoribonuclease	NA	NA	NA	NA
WP_015863880.1\|1713206_1713410_+	hypothetical protein	NA	NA	NA	NA
WP_083767438.1\|1713635_1713770_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_015863881.1\|1714361_1715267_+\|integrase	tyrosine-type recombinase/integrase	W8EHC2	Mycobacterium_phage	3.9e-17	30.5
WP_041269884.1\|1715306_1716764_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1719803:1719817	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1732448 : 1780821

Paenibacillus_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748951.1\|1732448_1733516_+\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	1.4e-10	23.7
WP_012749074.1\|1736290_1737457_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_015863895.1\|1738206_1738386_+	hypothetical protein	NA	NA	NA	NA
WP_015863896.1\|1738647_1739592_-	hypothetical protein	NA	NA	NA	NA
WP_015863897.1\|1740213_1740375_-	DUF469 family protein	NA	NA	NA	NA
WP_015863898.1\|1740937_1742155_-	MFS transporter	NA	NA	NA	NA
WP_083767440.1\|1742898_1743126_+\|transposase	transposase	NA	NA	NA	NA
WP_041269662.1\|1743361_1743580_+	hypothetical protein	NA	NA	NA	NA
WP_156779786.1\|1743598_1743739_+	hypothetical protein	NA	NA	NA	NA
WP_083767441.1\|1743938_1747016_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.0e-57	27.8
WP_012749074.1\|1747177_1748344_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_015863900.1\|1748540_1749242_-	hypothetical protein	NA	NA	NA	NA
WP_015863901.1\|1749280_1750357_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	6.8e-21	28.9
WP_015863902.1\|1750514_1751453_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	3.0e-105	58.5
WP_083767442.1\|1751445_1751967_-	NAD-dependent epimerase/dehydratase family protein	M4QRT5	Synechococcus_phage	4.2e-32	55.8
WP_049756993.1\|1752250_1753477_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012748845.1\|1753601_1754915_+\|transposase	transposase	NA	NA	NA	NA
WP_083767443.1\|1755233_1755791_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3I0Y8	Synechococcus_phage	2.3e-57	66.7
WP_012748997.1\|1755929_1756808_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_015863779.1\|1757091_1757982_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_015863904.1\|1759327_1760071_-	uridine phosphorylase	NA	NA	NA	NA
WP_015863906.1\|1761231_1762068_-	hypothetical protein	NA	NA	NA	NA
WP_049756994.1\|1763235_1763568_-	hypothetical protein	NA	NA	NA	NA
WP_015863907.1\|1763765_1764323_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_015863908.1\|1764463_1765717_+\|transposase	IS481 family transposase	M4T586	Rhodobacter_phage	1.4e-09	25.3
WP_015863909.1\|1765709_1766510_+	AAA family ATPase	NA	NA	NA	NA
WP_156779787.1\|1767233_1767854_-	hypothetical protein	NA	NA	NA	NA
WP_041269664.1\|1770648_1770840_-	hypothetical protein	NA	NA	NA	NA
WP_015863911.1\|1771032_1771455_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_015863912.1\|1771828_1772092_-	hypothetical protein	NA	NA	NA	NA
WP_015863913.1\|1772113_1773178_-	hypothetical protein	NA	NA	NA	NA
WP_041269666.1\|1773407_1773890_+	hypothetical protein	NA	NA	NA	NA
WP_012749074.1\|1774824_1775991_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_015863915.1\|1776312_1777896_+	multicopper oxidase family protein	NA	NA	NA	NA
WP_015863916.1\|1777978_1778182_-	copper chaperone CopZ	NA	NA	NA	NA
WP_012749092.1\|1779540_1780821_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1808323 : 1932685

109

Virus_Rctr71(16.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015863934.1\|1808323_1809499_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.7e-18	24.3
WP_015863935.1\|1809698_1810238_-	MFS transporter	NA	NA	NA	NA
WP_015863936.1\|1810234_1811662_-	FAD-binding oxidoreductase	A0A2K9L3G7	Tupanvirus	3.3e-55	32.1
WP_015863937.1\|1811822_1812683_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_015863938.1\|1812731_1813115_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	5.8e-31	54.6
WP_015863940.1\|1813807_1814623_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015863941.1\|1815012_1815960_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015863942.1\|1816308_1816983_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_015863943.1\|1817027_1817657_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.5e-23	33.0
WP_015863944.1\|1818145_1819549_+	amino acid permease	NA	NA	NA	NA
WP_015863945.1\|1819952_1820156_-	AAA family ATPase	NA	NA	NA	NA
WP_041269901.1\|1820235_1820916_-	HAD family hydrolase	NA	NA	NA	NA
WP_015863947.1\|1821463_1822291_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.1e-16	27.8
WP_015863948.1\|1824530_1825520_-	lipoate--protein ligase	NA	NA	NA	NA
WP_015863949.1\|1825807_1826890_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	2.7e-81	47.9
WP_015863950.1\|1827544_1828720_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.9e-18	24.0
WP_041269672.1\|1829391_1830528_-	KamA family radical SAM protein	NA	NA	NA	NA
WP_041269673.1\|1831197_1832685_-	PH domain-containing protein	NA	NA	NA	NA
WP_015863954.1\|1832671_1833151_-	PH domain-containing protein	NA	NA	NA	NA
WP_015863955.1\|1833800_1835972_-	YhgE/Pip domain-containing protein	NA	NA	NA	NA
WP_015863956.1\|1837792_1838278_+	QueT transporter family protein	NA	NA	NA	NA
WP_015863957.1\|1838650_1839886_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-142	63.0
WP_015863958.1\|1839857_1841102_-	DNA polymerase IV	A0A1W6JNT0	Morganella_phage	1.1e-27	31.0
WP_015863580.1\|1841265_1842348_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_015863959.1\|1843266_1844601_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_015863960.1\|1844677_1845367_-	zinc metallopeptidase	NA	NA	NA	NA
WP_041269675.1\|1845561_1846017_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_015863962.1\|1846429_1846624_+	hypothetical protein	NA	NA	NA	NA
WP_041269906.1\|1846691_1847297_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015863965.1\|1847617_1848019_-	MaoC family dehydratase	NA	NA	NA	NA
WP_015863966.1\|1848015_1848465_-	MaoC family dehydratase	NA	NA	NA	NA
WP_015863967.1\|1848487_1849252_-	beta-ketoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-14	29.8
WP_015863969.1\|1849728_1850481_-	NAD-dependent protein deacylase	S5M4R0	Bacillus_phage	7.1e-25	29.1
WP_015863970.1\|1851072_1852494_+	amino acid permease	NA	NA	NA	NA
WP_015863971.1\|1852673_1853342_-	HAD family hydrolase	NA	NA	NA	NA
WP_015863972.1\|1853419_1853881_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015863973.1\|1853935_1854334_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_015863974.1\|1854339_1855617_-	glutathionylspermidine synthase family protein	NA	NA	NA	NA
WP_015863975.1\|1855619_1855949_-	hypothetical protein	NA	NA	NA	NA
WP_041269907.1\|1855945_1856407_-	hypothetical protein	NA	NA	NA	NA
WP_015863977.1\|1856545_1857094_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012749199.1\|1857603_1858977_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_015863978.1\|1859198_1859894_+	DUF3153 domain-containing protein	NA	NA	NA	NA
WP_015863673.1\|1860002_1861193_+\|transposase	ISL3 family transposase	A0A0A8WEF4	Clostridium_phage	1.8e-30	25.2
WP_015863979.1\|1861918_1862158_-	transporter suffix domain-containing protein	NA	NA	NA	NA
WP_015863980.1\|1862233_1862536_-	hypothetical protein	NA	NA	NA	NA
WP_015863982.1\|1864916_1865261_-	DUF5082 domain-containing protein	NA	NA	NA	NA
WP_041269676.1\|1865484_1865802_-	hypothetical protein	NA	NA	NA	NA
WP_083767445.1\|1865773_1866328_-\|transposase	transposase	NA	NA	NA	NA
WP_015863983.1\|1867021_1867225_-	copper chaperone CopZ	A0A218MNH0	uncultured_virus	8.0e-08	40.6
WP_015863984.1\|1867246_1869640_-	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	5.1e-125	38.2
WP_015863985.1\|1869653_1869965_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_015863986.1\|1870042_1870807_-	DUF4111 domain-containing protein	NA	NA	NA	NA
WP_015863987.1\|1870956_1871313_-	hypothetical protein	NA	NA	NA	NA
WP_015863989.1\|1872460_1873909_-\|transposase	IS66-like element ISBst12 family transposase	NA	NA	NA	NA
WP_015863990.1\|1874358_1875237_+\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_012749072.1\|1875291_1876539_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	37.1
WP_015863992.1\|1877434_1878415_-	ABC transporter permease	NA	NA	NA	NA
WP_015863993.1\|1878407_1879325_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.6e-37	38.8
WP_015863994.1\|1879321_1880116_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_041269677.1\|1880298_1881252_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_015863996.1\|1881511_1882396_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_015863997.1\|1883133_1883520_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_015863998.1\|1883752_1883953_-	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	7.2e-17	59.1
WP_015863999.1\|1884153_1884711_-	thioredoxin family protein	NA	NA	NA	NA
WP_015864000.1\|1884975_1886223_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	5.4e-62	36.9
WP_015864001.1\|1886694_1887060_-	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	1.1e-26	53.1
WP_015864002.1\|1887187_1888903_-	multidrug ABC transporter permease	NA	NA	NA	NA
WP_015864003.1\|1888877_1889777_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-23	30.8
WP_015864004.1\|1889742_1890159_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_015864005.1\|1890279_1890957_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_015864006.1\|1891155_1892412_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_015864007.1\|1892457_1893387_-	EamA family transporter	NA	NA	NA	NA
WP_015864008.1\|1893367_1894300_-	DMT family transporter	NA	NA	NA	NA
WP_015864009.1\|1894738_1896115_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_015864010.1\|1896382_1897591_+	MFS transporter	NA	NA	NA	NA
WP_015864011.1\|1897698_1897914_-	hypothetical protein	NA	NA	NA	NA
WP_015864013.1\|1898611_1900306_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_015864014.1\|1900316_1900955_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_015864015.1\|1900959_1901400_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_015864016.1\|1901854_1903417_-	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_015864017.1\|1903428_1904211_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_015864018.1\|1904228_1905128_-	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	6.7e-38	35.4
WP_015864019.1\|1905141_1905354_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_015864020.1\|1905376_1906729_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_012749546.1\|1908250_1909129_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_015864021.1\|1909510_1910653_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_015864022.1\|1910799_1911444_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015864023.1\|1911602_1912061_+	flavodoxin family protein	NA	NA	NA	NA
WP_015864024.1\|1912258_1912507_+	hypothetical protein	NA	NA	NA	NA
WP_015864026.1\|1912692_1913490_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012748845.1\|1913759_1915073_-\|transposase	transposase	NA	NA	NA	NA
WP_015864027.1\|1915346_1916429_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	1.6e-81	47.9
WP_015864028.1\|1916777_1917986_-	threonine ammonia-lyase	NA	NA	NA	NA
WP_015864029.1\|1918339_1919503_+	tetracycline resistance MFS efflux pump	NA	NA	NA	NA
WP_012748925.1\|1919677_1920760_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_015864030.1\|1921000_1921657_+	TatD family hydrolase	NA	NA	NA	NA
WP_015864031.1\|1921752_1923120_+	MATE family efflux transporter	NA	NA	NA	NA
WP_015864032.1\|1923427_1923580_-	YjcZ family sporulation protein	NA	NA	NA	NA
WP_073967981.1\|1923615_1923714_-	YjcZ family sporulation protein	NA	NA	NA	NA
WP_015864034.1\|1923844_1924777_-	EamA family transporter RarD	NA	NA	NA	NA
WP_108430348.1\|1924879_1925014_-	sporulation protein YjcZ	NA	NA	NA	NA
WP_015864036.1\|1925166_1926045_-	cation transporter	NA	NA	NA	NA
WP_015864037.1\|1926251_1927097_-	M15 family metallopeptidase	NA	NA	NA	NA
WP_015864038.1\|1927261_1927969_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_015864039.1\|1928365_1929646_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_041269682.1\|1930060_1930462_-	hypothetical protein	NA	NA	NA	NA
WP_015864043.1\|1930989_1931148_-	hypothetical protein	NA	NA	NA	NA
WP_015864044.1\|1931437_1932685_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	1.4e-62	37.1

DBSCAN-SWA_14

1961128 : 2021788

Bacillus_phage(40.0%)

transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015864080.1\|1961128_1961362_-\|coat	spore coat protein CotH	NA	NA	NA	NA
WP_015864081.1\|1961706_1962972_-	hypothetical protein	NA	NA	NA	NA
WP_015864082.1\|1962989_1965248_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	3.3e-09	30.7
WP_015864083.1\|1965366_1966137_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_015864084.1\|1966403_1967612_-	NAD-dependent malic enzyme 4	NA	NA	NA	NA
WP_015864085.1\|1967801_1969985_-	malate synthase G	NA	NA	NA	NA
WP_015864086.1\|1970100_1971558_-	FAD-binding protein	NA	NA	NA	NA
WP_015864087.1\|1971554_1972913_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_015864088.1\|1972914_1974246_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_083767450.1\|1974411_1975323_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_015864090.1\|1975360_1976143_-	hydroxypyruvate isomerase	NA	NA	NA	NA
WP_015864091.1\|1976490_1977864_+\|transposase	IS1380-like element ISGsp2 family transposase	NA	NA	NA	NA
WP_015864092.1\|1978038_1978671_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_012749248.1\|1978840_1979923_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	1.2e-81	48.2
WP_015864093.1\|1980292_1981216_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	4.6e-82	52.9
WP_015864094.1\|1981290_1982697_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.1e-39	32.7
WP_083767451.1\|1982697_1983381_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-49	42.8
WP_015864096.1\|1983343_1984351_-	hypothetical protein	NA	NA	NA	NA
WP_015864097.1\|1985548_1986943_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.6e-65	32.5
WP_015864098.1\|1987028_1988387_+	peptidase S8	A0A127AWU5	Bacillus_phage	3.3e-36	35.9
WP_015864100.1\|1990259_1991627_+\|transposase	ISLre2-like element ISGsp4 family transposase	NA	NA	NA	NA
WP_015864101.1\|1992205_1993678_+	amino acid permease	NA	NA	NA	NA
WP_015864102.1\|1993703_1993871_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_081188853.1\|1993946_1994132_-	H-type small acid-soluble spore protein	NA	NA	NA	NA
WP_015864104.1\|1994125_1994308_-	hypothetical protein	NA	NA	NA	NA
WP_015864105.1\|1994407_1995403_+	acyltransferase family protein	NA	NA	NA	NA
WP_015864106.1\|1995441_1996101_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_015864107.1\|1996112_1996916_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_015864108.1\|1996930_1997740_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_012748845.1\|1998378_1999692_-\|transposase	transposase	NA	NA	NA	NA
WP_015864109.1\|1999870_2000902_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	7.7e-54	40.6
WP_015864110.1\|2000914_2002582_-	membrane protein	NA	NA	NA	NA
WP_015864111.1\|2002732_2004415_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA
WP_015864112.1\|2004652_2005321_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_015864113.1\|2005317_2006172_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015864114.1\|2006794_2007445_+	amino acid transporter	NA	NA	NA	NA
WP_015864115.1\|2007434_2008190_-	LamB/YcsF family protein	NA	NA	NA	NA
WP_015864116.1\|2008179_2009166_-	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_015864117.1\|2009140_2009842_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
WP_015864118.1\|2010126_2010675_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_015864119.1\|2010779_2012177_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	4.4e-28	26.5
WP_041269915.1\|2012393_2013854_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_041269916.1\|2014170_2015697_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_015864122.1\|2015952_2017134_+	MFS transporter	NA	NA	NA	NA
WP_015864123.1\|2017954_2018350_-	thiol-disulfide oxidoreductase DCC family protein	NA	NA	NA	NA
WP_015864124.1\|2018346_2019021_-	SOS response-associated peptidase	A0A1P8CX02	Bacillus_phage	1.4e-35	54.7
WP_015864125.1\|2019107_2019521_+	hypothetical protein	NA	NA	NA	NA
WP_015864126.1\|2019725_2020094_-	DUF2294 domain-containing protein	NA	NA	NA	NA
WP_012748845.1\|2020474_2021788_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_15

2056273 : 2190527

Streptococcus_phage(20.0%)

tRNA,transposase,integrase,protease,coat

attL 2107177:2107206|attR 2166105:2166134

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015864164.1\|2056273_2056819_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_015864165.1\|2058215_2059016_+	AAA family ATPase	NA	NA	NA	NA
WP_015864166.1\|2062251_2062467_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_015864167.1\|2062587_2063085_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_015864168.1\|2063098_2065279_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_015864169.1\|2065291_2065993_-	type I-B CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_015864170.1\|2065995_2066883_-	type I-B CRISPR-associated protein Cas7/Cst2/DevR	NA	NA	NA	NA
WP_015864171.1\|2066879_2068685_-	CRISPR-associated protein Cst1	NA	NA	NA	NA
WP_015864172.1\|2068681_2069410_-	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_012748997.1\|2071754_2072633_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_015864173.1\|2072853_2074059_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_015864174.1\|2074198_2075875_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_041269690.1\|2076068_2076623_+	VanZ family protein	NA	NA	NA	NA
WP_015864176.1\|2076954_2078079_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.2e-70	41.6
WP_015864177.1\|2078075_2079317_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.1e-102	49.0
WP_015864178.1\|2079353_2079638_-	DUF3784 domain-containing protein	NA	NA	NA	NA
WP_015864179.1\|2079790_2080213_-	GtrA family protein	NA	NA	NA	NA
WP_041269691.1\|2080316_2080595_-	hypothetical protein	NA	NA	NA	NA
WP_015864180.1\|2080661_2081042_+	hypothetical protein	NA	NA	NA	NA
WP_041269919.1\|2081189_2081738_-	shikimate kinase	NA	NA	NA	NA
WP_015864182.1\|2081795_2082575_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	8.1e-24	35.6
WP_015864183.1\|2083068_2083914_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_041269692.1\|2084200_2084656_-	nucleotidyltransferase	NA	NA	NA	NA
WP_015864186.1\|2084714_2086283_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	3.9e-17	33.7
WP_015864187.1\|2086663_2087101_-	DUF4275 family protein	NA	NA	NA	NA
WP_015864188.1\|2087111_2088035_-	hypothetical protein	NA	NA	NA	NA
WP_015864189.1\|2088119_2089439_+	M20/M25/M40 family metallo-hydrolase	A0A0K2CPK3	Brevibacillus_phage	8.9e-55	48.3
WP_015864190.1\|2089689_2092185_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015864191.1\|2092204_2093899_-	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_015864192.1\|2093923_2097229_-	helicase	NA	NA	NA	NA
WP_015864193.1\|2097356_2099798_-	DNA helicase	Q5YA94	Bacillus_phage	1.0e-35	27.1
WP_015864194.1\|2099790_2100117_-	nucleoside triphosphate pyrophosphohydrolase	A0A2I7SAA6	Vibrio_phage	1.1e-06	41.8
WP_156779791.1\|2100258_2100423_+	hypothetical protein	NA	NA	NA	NA
WP_041269693.1\|2100658_2100841_+	hypothetical protein	NA	NA	NA	NA
WP_012748944.1\|2100949_2101348_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.0e-51	72.0
WP_012748945.1\|2101360_2102470_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	9.0e-85	48.3
WP_015864195.1\|2103138_2103471_+	hypothetical protein	NA	NA	NA	NA
WP_015864196.1\|2103741_2104140_-	hypothetical protein	NA	NA	NA	NA
WP_015864197.1\|2104161_2105085_-	glutaminase A	NA	NA	NA	NA
WP_015864198.1\|2105287_2106460_-	8-amino-7-oxononanoate synthase	D2TEZ5	Emiliania_huxleyi_virus	2.5e-45	31.0
2107177:2107206	attL	NA	NA	NA	NA
WP_012749092.1\|2107287_2108568_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015864200.1\|2108967_2110053_+\|coat	spore coat protein	NA	NA	NA	NA
WP_015864201.1\|2110174_2111383_+	hypothetical protein	NA	NA	NA	NA
WP_012749253.1\|2111939_2113376_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1X9I6E7	Streptococcus_phage	9.8e-07	25.6
WP_015864202.1\|2113543_2114209_+	hypothetical protein	NA	NA	NA	NA
WP_015864203.1\|2114556_2114925_-	glyoxalase	NA	NA	NA	NA
WP_015864204.1\|2114921_2115713_-\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_083767453.1\|2115732_2116038_-	hypothetical protein	NA	NA	NA	NA
WP_015864206.1\|2116094_2116973_-\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_015864207.1\|2117248_2117761_-	DoxX family protein	NA	NA	NA	NA
WP_015864208.1\|2118019_2118361_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015864209.1\|2118412_2119291_-	5'-3' exonuclease	F8WQ40	Bacillus_phage	2.9e-25	33.0
WP_156779799.1\|2120551_2121856_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_015864206.1\|2122035_2122914_+\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_015864212.1\|2124396_2125638_+	aminopeptidase	NA	NA	NA	NA
WP_015864213.1\|2126253_2129400_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_015864214.1\|2129414_2132414_-	site-specific DNA-methyltransferase	B3RH19	Escherichia_phage	2.5e-20	25.7
WP_015864215.1\|2132451_2135346_-	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	1.1e-275	50.5
WP_015864216.1\|2135566_2136445_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_041269694.1\|2136544_2136856_-	hypothetical protein	NA	NA	NA	NA
WP_015864218.1\|2149786_2150077_+	hypothetical protein	NA	NA	NA	NA
WP_082805398.1\|2150128_2150356_-\|transposase	transposase	A0A0H3UZC2	Geobacillus_virus	7.6e-15	70.6
WP_015864219.1\|2150914_2151358_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_015864220.1\|2151375_2152401_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_015864222.1\|2152654_2153590_-	hypothetical protein	NA	NA	NA	NA
WP_015863799.1\|2154533_2155814_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015864223.1\|2156880_2157867_-	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.9e-49	38.1
WP_015864224.1\|2157863_2159048_-	galactokinase	NA	NA	NA	NA
WP_015864225.1\|2159189_2159972_+	EcsC family protein	NA	NA	NA	NA
WP_015864226.1\|2161126_2162791_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_015864227.1\|2163188_2164469_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_015864228.1\|2164826_2165963_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	4.2e-37	28.7
WP_012748845.1\|2166480_2167794_-\|transposase	transposase	NA	NA	NA	NA
2166105:2166134	attR	NA	NA	NA	NA
WP_015864229.1\|2167962_2168541_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_015864231.1\|2168734_2169463_-	GHKL domain-containing protein	A0A1V0SGX0	Hokovirus	1.6e-13	35.2
WP_015863580.1\|2169499_2170582_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_015864232.1\|2170946_2171414_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_015864234.1\|2171729_2171918_+	hypothetical protein	NA	NA	NA	NA
WP_015864235.1\|2171917_2172172_+	hypothetical protein	NA	NA	NA	NA
WP_015864236.1\|2172207_2172546_-	hypothetical protein	NA	NA	NA	NA
WP_015864237.1\|2172716_2172917_+	hypothetical protein	NA	NA	NA	NA
WP_015864239.1\|2173213_2173582_-	YppE family protein	NA	NA	NA	NA
WP_015864240.1\|2173645_2173894_-	hypothetical protein	NA	NA	NA	NA
WP_015864241.1\|2174160_2174766_+	Holliday junction resolvase RecU	A0A2H4J3A4	uncultured_Caudovirales_phage	2.3e-26	36.4
WP_015864242.1\|2174802_2177541_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_015864243.1\|2177567_2178071_-	hypothetical protein	NA	NA	NA	NA
WP_015864244.1\|2178054_2178726_-	endonuclease III	NA	NA	NA	NA
WP_015864245.1\|2178785_2179493_-	DnaD domain-containing protein	A0A0N7AE27	Bacillus_phage	3.3e-24	50.0
WP_015864246.1\|2179558_2180851_-\|tRNA	asparagine--tRNA ligase	M1PB22	Moumouvirus	4.2e-57	30.8
WP_015864247.1\|2180998_2182189_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_015864248.1\|2182210_2182693_-	hypothetical protein	NA	NA	NA	NA
WP_015864249.1\|2182699_2182870_-	YpmA family protein	NA	NA	NA	NA
WP_015864250.1\|2183155_2185921_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	2.7e-69	29.9
WP_015864251.1\|2185991_2186375_-	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_015864252.1\|2186417_2187266_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_015864253.1\|2187262_2188102_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	M4QNT1	Ostreococcus_lucimarinus_virus	2.2e-51	40.1
WP_015864254.1\|2188365_2189355_-	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA
WP_015864255.1\|2189312_2190527_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	9.4e-43	49.3

DBSCAN-SWA_16

2208305 : 2219344

Pandoravirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015864277.1\|2208305_2209325_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.5e-65	41.4
WP_015864278.1\|2209317_2210844_-	anthranilate synthase component I	S4VNU7	Pandoravirus	2.1e-31	35.9
WP_015864279.1\|2211039_2211420_-	chorismate mutase	NA	NA	NA	NA
WP_015864280.1\|2211385_2212513_-	3-dehydroquinate synthase	E5ERI4	Ostreococcus_lucimarinus_virus	7.6e-23	26.2
WP_015864281.1\|2212515_2213682_-	chorismate synthase	A0A291AU41	Pandoravirus	4.8e-44	36.7
WP_015864282.1\|2213800_2214574_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_041269929.1\|2214702_2215149_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	4.1e-28	45.0
WP_015864284.1\|2215250_2216213_-	heptaprenyl diphosphate synthase component II	A0A1V0SE37	Indivirus	2.0e-08	24.4
WP_015864285.1\|2216230_2216935_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_041269930.1\|2216939_2217755_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_015864287.1\|2217845_2218070_-	trp RNA-binding attenuation protein MtrB	NA	NA	NA	NA
WP_015864288.1\|2218103_2218670_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	8.2e-50	55.4
WP_015864289.1\|2219071_2219344_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.0e-29	77.8

DBSCAN-SWA_17

2238854 : 2249407

Enterococcus_phage(50.0%)

transposase,protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015864311.1\|2238854_2239529_-\|protease	intramembrane metalloprotease PrsW	NA	NA	NA	NA
WP_012748945.1\|2240017_2241127_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	9.0e-85	48.3
WP_012748944.1\|2241139_2241538_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.0e-51	72.0
WP_012748853.1\|2241884_2243072_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_015864312.1\|2243170_2244154_-	asparaginase	NA	NA	NA	NA
WP_015864313.1\|2244317_2245298_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA
WP_015864314.1\|2245382_2246669_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_015864315.1\|2246924_2247515_-	genetic competence negative regulator	NA	NA	NA	NA
WP_041269701.1\|2247621_2248407_-	metallophosphoesterase	NA	NA	NA	NA
WP_049757038.1\|2248415_2248760_-	hypothetical protein	NA	NA	NA	NA
WP_015864318.1\|2248919_2249150_+\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_015864319.1\|2249146_2249407_+\|coat	spore coat protein CotJB	NA	NA	NA	NA

DBSCAN-SWA_18

2283615 : 2295244

Staphylococcus_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015864357.1\|2283615_2284662_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.6e-38	42.6
WP_012748925.1\|2284813_2285896_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	9.1e-82	48.2
WP_041269703.1\|2286020_2286299_+	DUF2935 domain-containing protein	NA	NA	NA	NA
WP_041269933.1\|2286341_2286821_-	DUF3907 family protein	NA	NA	NA	NA
WP_015864359.1\|2286857_2287277_-	hypothetical protein	NA	NA	NA	NA
WP_015864360.1\|2287340_2287931_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.1e-16	34.6
WP_041269704.1\|2287917_2288688_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	9.6e-09	24.0
WP_015864362.1\|2288814_2289330_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_015864363.1\|2289345_2289693_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015864364.1\|2289816_2290281_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-45	64.2
WP_015864365.1\|2290354_2291548_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.3e-118	54.6
WP_015864366.1\|2291569_2292217_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-43	45.8
WP_015864367.1\|2292232_2293318_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.2e-58	37.2
WP_015864368.1\|2294161_2295244_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	2.0e-81	47.9

DBSCAN-SWA_19

2548401 : 2605244

uncultured_Mediterranean_phage(14.29%)

transposase,tRNA,protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015864626.1\|2548401_2549544_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	9.3e-85	44.0
WP_015864627.1\|2549561_2550590_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_015864628.1\|2550613_2550820_-	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_015864629.1\|2550816_2551818_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	8.1e-08	28.7
WP_015864630.1\|2551831_2552437_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_015864631.1\|2552560_2553046_-	hypothetical protein	NA	NA	NA	NA
WP_015864632.1\|2553221_2553962_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_015864633.1\|2554152_2554881_-	sporulation protein	NA	NA	NA	NA
WP_015864634.1\|2554995_2555736_-	NAD(+) synthase	E3SLH5	Synechococcus_phage	7.7e-32	36.6
WP_015864635.1\|2555777_2556722_-	phosphotransferase	NA	NA	NA	NA
WP_015864636.1\|2556715_2558014_-\|coat	SafA/ExsA family spore coat assembly protein	NA	NA	NA	NA
WP_015864637.1\|2558183_2559287_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_015864638.1\|2559286_2560138_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_015864639.1\|2560166_2561717_-	L-aspartate oxidase	NA	NA	NA	NA
WP_015864640.1\|2561822_2562962_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_015864641.1\|2562963_2563503_+	transcription repressor NadR	NA	NA	NA	NA
WP_015864642.1\|2563551_2564013_+	NUDIX hydrolase	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	5.0e-05	41.9
WP_015864643.1\|2564076_2564925_-	prephenate dehydratase	NA	NA	NA	NA
WP_015864644.1\|2564946_2565390_-	ACT domain-containing protein	NA	NA	NA	NA
WP_015864645.1\|2565419_2566706_-	GTPase ObgE	NA	NA	NA	NA
WP_012748972.1\|2566947_2568195_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	36.9
WP_015864646.1\|2568402_2568942_-	sporulation protein	NA	NA	NA	NA
WP_015864647.1\|2569134_2569425_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_015864648.1\|2569440_2569773_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_015864649.1\|2569784_2570093_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_015864650.1\|2570364_2571228_-	stage IV sporulation protein FB	NA	NA	NA	NA
WP_015864651.1\|2571220_2571982_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_015864652.1\|2572084_2572888_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_015864653.1\|2572890_2573607_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_015864654.1\|2573620_2574139_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_015864655.1\|2574135_2575002_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_015864656.1\|2575023_2576043_-	rod shape-determining protein	NA	NA	NA	NA
WP_015864657.1\|2576204_2576885_-	JAB domain-containing protein	NA	NA	NA	NA
WP_015864658.1\|2576932_2577493_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_041269717.1\|2577609_2578551_-	hypothetical protein	NA	NA	NA	NA
WP_015864660.1\|2578658_2579117_-	type II secretion system protein	NA	NA	NA	NA
WP_015864661.1\|2579136_2579859_-	hypothetical protein	NA	NA	NA	NA
WP_015864662.1\|2579855_2580452_-	fimbrial protein	NA	NA	NA	NA
WP_015864663.1\|2580441_2581395_-	pilus assembly protein PilM	NA	NA	NA	NA
WP_015864664.1\|2581409_2582156_-	prepilin peptidase	NA	NA	NA	NA
WP_015864665.1\|2582166_2582646_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_015864666.1\|2582909_2584583_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_015864667.1\|2584915_2586127_-	type II secretion system F family protein	NA	NA	NA	NA
WP_015864668.1\|2586113_2587172_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_015864669.1\|2587184_2588852_-	type II secretion system protein E	NA	NA	NA	NA
WP_015864670.1\|2588855_2590223_-	hypothetical protein	NA	NA	NA	NA
WP_015864671.1\|2590244_2591069_-	photosystem reaction center subunit H	NA	NA	NA	NA
WP_041269718.1\|2591089_2592562_-	hypothetical protein	NA	NA	NA	NA
WP_015864673.1\|2592639_2593248_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_015864674.1\|2593231_2593807_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_012748951.1\|2594128_2595196_+\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	1.4e-10	23.7
WP_015864677.1\|2596698_2599527_-	VWA domain-containing protein	NA	NA	NA	NA
WP_041269950.1\|2599610_2600903_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_015864679.1\|2600998_2603641_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	1.1e-165	42.5
WP_015864680.1\|2604079_2604268_+	hypothetical protein	NA	NA	NA	NA
WP_041269951.1\|2604233_2605244_-\|coat	spore coat protein YsxE	NA	NA	NA	NA

DBSCAN-SWA_20

2799000 : 2899178

Staphylococcus_phage(33.33%)

tRNA,holin,transposase,integrase,portal

attL 2857312:2857371|attR 2873249:2873312

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015864859.1\|2799000_2801418_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	74.5
WP_015864860.1\|2801941_2803135_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.5e-101	47.7
WP_015864861.1\|2803237_2803405_-	hypothetical protein	NA	NA	NA	NA
WP_015864862.1\|2803420_2803684_-	YtzC family protein	NA	NA	NA	NA
WP_015863990.1\|2803919_2804798_+\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_015864863.1\|2804846_2805809_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.5e-59	77.9
WP_015864864.1\|2805805_2806381_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.2e-50	53.9
WP_015864865.1\|2806410_2807490_-	tetraprenyl-beta-curcumene synthase family protein	NA	NA	NA	NA
WP_015864866.1\|2807519_2808311_-	alpha/beta hydrolase	A0A220T682	Eptesipox_virus	3.6e-11	24.3
WP_015864867.1\|2808398_2808917_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_015864868.1\|2810330_2811173_+	hypothetical protein	NA	NA	NA	NA
WP_015864869.1\|2811169_2813068_-	asparagine synthase (glutamine-hydrolyzing)	E5EQ62	Micromonas_sp._RCC1109_virus	1.2e-33	31.1
WP_015864870.1\|2813268_2814480_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.1e-167	77.2
WP_012748845.1\|2814952_2816266_+\|transposase	transposase	NA	NA	NA	NA
WP_041269730.1\|2816590_2818177_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.9e-193	63.6
WP_015864872.1\|2818207_2818450_-	DUF2584 domain-containing protein	NA	NA	NA	NA
WP_041269963.1\|2818479_2819268_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	3.3e-33	38.1
WP_015864874.1\|2819372_2820371_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015864875.1\|2820388_2821162_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.2e-36	38.7
WP_015864876.1\|2821145_2821955_+	ABC transporter permease	NA	NA	NA	NA
WP_015864877.1\|2821969_2822431_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.4e-18	36.7
WP_015864878.1\|2822517_2822853_-	hypothetical protein	NA	NA	NA	NA
WP_015864880.1\|2823435_2823876_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	3.2e-57	74.0
WP_073967992.1\|2824085_2824223_+	YtzI protein	NA	NA	NA	NA
WP_015864881.1\|2824256_2824730_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_041269731.1\|2824849_2825086_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.9e-23	62.3
WP_015864883.1\|2825400_2826345_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015864884.1\|2826475_2827024_-	hypothetical protein	NA	NA	NA	NA
WP_015864885.1\|2827039_2827330_-	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_015864886.1\|2827503_2827665_+	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_015864887.1\|2827751_2827952_+	hypothetical protein	NA	NA	NA	NA
WP_015864888.1\|2827966_2829445_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	5.4e-69	33.3
WP_015864889.1\|2829661_2830480_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_015864890.1\|2830479_2831292_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	A0A0B5A484	Mycobacterium_phage	5.0e-08	25.9
WP_015864891.1\|2831288_2833043_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_015864892.1\|2833035_2834418_-	isochorismate synthase	NA	NA	NA	NA
WP_012749074.1\|2834675_2835842_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_015864893.1\|2836034_2836973_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_015864894.1\|2837058_2837820_+	yteA family sporulation protein	NA	NA	NA	NA
WP_012749414.1\|2839036_2840284_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	1.2e-61	36.9
WP_015864895.1\|2840655_2841609_+	cation transporter	NA	NA	NA	NA
WP_015864896.1\|2841727_2842213_-	processed acidic surface protein	NA	NA	NA	NA
WP_015864898.1\|2842646_2843057_-	DUF3021 domain-containing protein	NA	NA	NA	NA
WP_015864899.1\|2843053_2843512_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_015864901.1\|2844153_2844798_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_015374306.1\|2844860_2845805_-	LLM class oxidoreductase	NA	NA	NA	NA
WP_015864902.1\|2846029_2847142_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_015374305.1\|2847257_2847668_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_015864164.1\|2849141_2849687_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_015864903.1\|2849839_2851093_+\|transposase	IS481 family transposase	M4T586	Rhodobacter_phage	4.8e-10	25.6
WP_015864165.1\|2851085_2851886_+	AAA family ATPase	NA	NA	NA	NA
WP_012749074.1\|2852520_2853687_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_015864904.1\|2855154_2856342_+\|transposase	IS701 family transposase	NA	NA	NA	NA
2857312:2857371	attL	NA	NA	NA	NA
WP_015864906.1\|2857528_2858107_-	hypothetical protein	NA	NA	NA	NA
WP_015864907.1\|2858216_2858558_-	hypothetical protein	NA	NA	NA	NA
WP_015864908.1\|2859238_2860603_-\|portal	phage portal protein	A0A097BY86	Enterococcus_phage	2.4e-07	20.5
WP_015864909.1\|2860726_2862331_-	hypothetical protein	A0A088CBQ3	Shigella_phage	1.0e-28	26.9
WP_015864910.1\|2862576_2862984_-	hypothetical protein	NA	NA	NA	NA
WP_015864911.1\|2863318_2864284_-	hypothetical protein	A0A0H3V0V6	Geobacillus_virus	3.0e-116	65.3
WP_015864913.1\|2864571_2865375_-	hypothetical protein	NA	NA	NA	NA
WP_015864914.1\|2865593_2865773_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015864915.1\|2865870_2866722_-	hypothetical protein	NA	NA	NA	NA
WP_156779800.1\|2866777_2867233_-	hypothetical protein	NA	NA	NA	NA
WP_015864917.1\|2867238_2867517_-	hypothetical protein	NA	NA	NA	NA
WP_015864918.1\|2867516_2867963_-	hypothetical protein	NA	NA	NA	NA
WP_015864919.1\|2867976_2868384_-	hypothetical protein	NA	NA	NA	NA
WP_015864920.1\|2868376_2868598_-\|holin	holin	NA	NA	NA	NA
WP_156779793.1\|2869540_2870194_-	hypothetical protein	A0A1C8EA76	Bacillus_phage	7.6e-07	26.5
WP_012749074.1\|2870272_2871439_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_041269736.1\|2871559_2871790_-	hypothetical protein	NA	NA	NA	NA
WP_015864921.1\|2871951_2872137_-	hypothetical protein	NA	NA	NA	NA
WP_015864922.1\|2872138_2873128_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	1.5e-70	42.6
WP_083767457.1\|2881139_2881814_+	protein-glutamine gamma-glutamyltransferase	NA	NA	NA	NA
2873249:2873312	attR	NA	NA	NA	NA
WP_012748945.1\|2881897_2883007_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	9.0e-85	48.3
WP_012748944.1\|2883019_2883418_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.0e-51	72.0
WP_015864923.1\|2883713_2884616_-	DMT family transporter	NA	NA	NA	NA
WP_015864924.1\|2884682_2885360_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	1.3e-14	34.0
WP_015864925.1\|2885765_2886701_+	nuclease	A0A1P8CWK6	Bacillus_phage	2.4e-14	37.7
WP_015864926.1\|2886792_2887053_-	hypothetical protein	NA	NA	NA	NA
WP_015864927.1\|2887111_2887600_-	N-acetyltransferase	NA	NA	NA	NA
WP_015864928.1\|2887768_2887954_-	H-type small acid-soluble spore protein	NA	NA	NA	NA
WP_015864929.1\|2888080_2889076_+	potassium channel protein	NA	NA	NA	NA
WP_015864930.1\|2889072_2889477_-	hypothetical protein	NA	NA	NA	NA
WP_015864931.1\|2889784_2890099_-	hypothetical protein	NA	NA	NA	NA
WP_015864932.1\|2890357_2891707_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_015864933.1\|2891867_2893031_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_015864934.1\|2893180_2893414_+	DUF378 domain-containing protein	NA	NA	NA	NA
WP_015864935.1\|2893451_2893817_-	general stress protein 13	NA	NA	NA	NA
WP_015864936.1\|2893933_2895106_-	aminotransferase	NA	NA	NA	NA
WP_015864937.1\|2895102_2895603_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_015864938.1\|2895708_2895867_+	hypothetical protein	NA	NA	NA	NA
WP_015864939.1\|2895906_2897067_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_015864940.1\|2897146_2897665_-	superoxide dismutase family protein	NA	NA	NA	NA
WP_015864941.1\|2897727_2897940_-	hypothetical protein	NA	NA	NA	NA
WP_015864942.1\|2898095_2899178_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	5.3e-82	48.2

DBSCAN-SWA_21

2915416 : 2970866

Paenibacillus_phage(15.38%)

transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012749074.1\|2915416_2916583_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-35	29.7
WP_015864960.1\|2916858_2917221_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	3.3e-20	50.5
WP_015864961.1\|2917275_2918130_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_015864962.1\|2918373_2918613_-	YuzB family protein	NA	NA	NA	NA
WP_012748845.1\|2918831_2920145_+\|transposase	transposase	NA	NA	NA	NA
WP_015864963.1\|2920437_2921508_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015864964.1\|2921548_2921872_-	YuzD family protein	NA	NA	NA	NA
WP_015864965.1\|2921967_2922204_+	NifU family protein	Q58MC7	Prochlorococcus_phage	3.8e-09	43.8
WP_015864966.1\|2922254_2923169_-	homoserine kinase	NA	NA	NA	NA
WP_015864967.1\|2923165_2924227_-	threonine synthase	NA	NA	NA	NA
WP_015864968.1\|2924226_2925525_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_015864969.1\|2925714_2926698_-	D-glycerate dehydrogenase	M1I636	Acanthocystis_turfacea_Chlorella_virus	5.1e-23	27.5
WP_015864970.1\|2926788_2927799_-\|coat	spore coat protein YutH	NA	NA	NA	NA
WP_015864971.1\|2927959_2928457_+	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	2.7e-41	57.0
WP_041269973.1\|2928509_2929280_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_015864973.1\|2929510_2929948_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_015864974.1\|2930066_2930336_+	DUF3055 domain-containing protein	NA	NA	NA	NA
WP_015864975.1\|2930983_2931259_-	DUF1027 domain-containing protein	NA	NA	NA	NA
WP_015864976.1\|2931371_2932058_+	sporulation protein	NA	NA	NA	NA
WP_015864977.1\|2932122_2933019_-	lipoyl synthase	NA	NA	NA	NA
WP_156779801.1\|2933209_2934175_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_015864979.1\|2934219_2934327_-	methionine/alanine import family NSS transporter small subunit	NA	NA	NA	NA
WP_015864980.1\|2934327_2935848_-	sodium-dependent transporter	NA	NA	NA	NA
WP_015864981.1\|2936144_2936894_-	sporulation protein YunB	NA	NA	NA	NA
WP_015864982.1\|2936967_2937270_-	DUF1805 domain-containing protein	NA	NA	NA	NA
WP_015864983.1\|2937326_2938718_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_015864984.1\|2938731_2939550_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_015864985.1\|2939567_2940416_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_156779794.1\|2940803_2941052_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_015864988.1\|2942308_2943475_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.5e-24	25.2
WP_015864989.1\|2944828_2946226_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_015864990.1\|2946257_2946695_-	SUF system NifU family Fe-S cluster assembly protein	A0A0K1LS29	Mycobacterium_phage	1.3e-15	37.1
WP_015864991.1\|2946684_2947905_-	cysteine desulfurase	Q2XUY6	environmental_halophage	3.5e-122	49.3
WP_015864992.1\|2947901_2949215_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_015864993.1\|2949237_2950017_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	2.3e-10	25.7
WP_015864994.1\|2950221_2951061_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015864995.1\|2951077_2951746_-	ABC transporter permease	NA	NA	NA	NA
WP_015864996.1\|2951735_2952764_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-30	33.8
WP_012748972.1\|2953760_2955008_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	36.9
WP_081189151.1\|2955384_2955726_-	sterol-binding protein	NA	NA	NA	NA
WP_015864998.1\|2955954_2956266_-	thioredoxin family protein	NA	NA	NA	NA
WP_015864999.1\|2956274_2956625_-	toprim domain-containing protein	NA	NA	NA	NA
WP_108430411.1\|2956651_2956849_-	DUF2553 family protein	NA	NA	NA	NA
WP_015865000.1\|2957010_2957394_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_015865001.1\|2957467_2957830_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	3.5e-22	51.4
WP_015865002.1\|2957886_2959671_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_015865003.1\|2959725_2960898_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_015865004.1\|2960926_2963311_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_015865005.1\|2963496_2963646_+	YuzL family protein	NA	NA	NA	NA
WP_015865006.1\|2963829_2964747_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	8.3e-68	44.8
WP_015865007.1\|2964908_2965172_+	hypothetical protein	NA	NA	NA	NA
WP_015865008.1\|2965190_2965523_+\|coat	spore coat protein	NA	NA	NA	NA
WP_108430412.1\|2965601_2965691_-	DUF2573 family protein	NA	NA	NA	NA
WP_015865010.1\|2966054_2966273_-	hypothetical protein	NA	NA	NA	NA
WP_015865011.1\|2966406_2967774_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA
WP_015865012.1\|2967763_2968483_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_015865013.1\|2968482_2969046_-	biotin transporter BioY	NA	NA	NA	NA
WP_015863990.1\|2969987_2970866_-\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_22

3019496 : 3082673

Streptococcus_phage(27.27%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748945.1\|3019496_3020606_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	9.0e-85	48.3
WP_012748944.1\|3020618_3021017_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.0e-51	72.0
WP_015865059.1\|3021163_3022510_-	peptidoglycan DD-metalloendopeptidase family protein	D6QWN5	uncultured_phage	6.3e-16	45.6
WP_015865060.1\|3022551_3023445_-	ABC transporter permease	NA	NA	NA	NA
WP_015865061.1\|3023434_3024121_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	1.6e-28	38.3
WP_015865062.1\|3024308_3024641_-	cytochrome c	NA	NA	NA	NA
WP_015865063.1\|3024702_3025563_-	YitT family protein	NA	NA	NA	NA
WP_097354901.1\|3025700_3026802_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	8.3e-06	42.4
WP_015865065.1\|3026906_3029420_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_041269742.1\|3029543_3029954_-	hypothetical protein	NA	NA	NA	NA
WP_015865067.1\|3030017_3030566_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_015865068.1\|3030987_3031374_-	hypothetical protein	NA	NA	NA	NA
WP_015865069.1\|3031386_3031740_-	flagellar protein FliT	NA	NA	NA	NA
WP_015865070.1\|3031739_3032141_-	flagellar export chaperone FliS	NA	NA	NA	NA
WP_015865071.1\|3032168_3033755_-	flagellar hook-associated protein 2	NA	NA	NA	NA
WP_041269743.1\|3033770_3034130_-	flagellar protein FlaG	NA	NA	NA	NA
WP_015865073.1\|3034416_3034803_-	hypothetical protein	NA	NA	NA	NA
WP_015865074.1\|3034799_3035060_-	hypothetical protein	NA	NA	NA	NA
WP_015865075.1\|3035441_3035981_+	hypothetical protein	NA	NA	NA	NA
WP_015865076.1\|3035977_3036511_+	hypothetical protein	NA	NA	NA	NA
WP_015865077.1\|3037183_3038791_-	hypothetical protein	NA	NA	NA	NA
WP_015865078.1\|3039756_3040776_-	flagellin	NA	NA	NA	NA
WP_015865079.1\|3040932_3041118_-	hypothetical protein	NA	NA	NA	NA
WP_015865080.1\|3041114_3041363_-	carbon storage regulator CsrA	H2BD56	Pseudomonas_phage	2.6e-08	60.8
WP_015865081.1\|3041377_3041812_-	flagellar assembly protein FliW	NA	NA	NA	NA
WP_015865082.1\|3041834_3042389_-	hypothetical protein	NA	NA	NA	NA
WP_083767474.1\|3042614_3043472_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_083767458.1\|3043621_3044185_-\|transposase	transposase	NA	NA	NA	NA
WP_015865083.1\|3044473_3045379_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA
WP_015865084.1\|3045389_3047015_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_015865085.1\|3047026_3047503_-	flagellar protein FlgN	NA	NA	NA	NA
WP_015865086.1\|3047520_3047784_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
WP_015865087.1\|3047855_3048263_-	membrane protein	NA	NA	NA	NA
WP_015865088.1\|3048286_3048724_-	YaaR family protein	NA	NA	NA	NA
WP_015865089.1\|3048806_3051206_-	flagellar protein	NA	NA	NA	NA
WP_015865090.1\|3051225_3051654_-	flagellar export chaperone FliS	NA	NA	NA	NA
WP_015865091.1\|3051709_3052006_-	flagellar biosynthesis FlhS	NA	NA	NA	NA
WP_156779795.1\|3052002_3057684_-	hypothetical protein	NA	NA	NA	NA
WP_015865093.1\|3057753_3058461_-	ComF family protein	NA	NA	NA	NA
WP_015865094.1\|3058457_3059957_-	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	1.0e-70	39.9
WP_015865095.1\|3060027_3060873_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	6.8e-16	35.6
WP_015865096.1\|3060981_3061659_-	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	5.6e-05	30.2
WP_015865097.1\|3061690_3062836_-	histidine kinase	NA	NA	NA	NA
WP_015865098.1\|3063058_3063694_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	8.1e-38	40.7
WP_015865099.1\|3063733_3064702_+	LCP family protein	NA	NA	NA	NA
WP_015865100.1\|3064744_3065809_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_015865101.1\|3066457_3067336_-	accessory Sec system S-layer assembly protein	NA	NA	NA	NA
WP_015865102.1\|3067348_3069712_-	accessory Sec system translocase SecA2	NA	NA	NA	NA
WP_015865103.1\|3070874_3071558_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015865104.1\|3071579_3071948_+	DUF2304 domain-containing protein	NA	NA	NA	NA
WP_015865105.1\|3071934_3072303_+	EamA family transporter	NA	NA	NA	NA
WP_015865106.1\|3072334_3073594_+	membrane protein	NA	NA	NA	NA
WP_012748995.1\|3074129_3075788_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015865107.1\|3076783_3077989_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_015865108.1\|3078306_3078966_+	hypothetical protein	NA	NA	NA	NA
WP_015865109.1\|3078983_3080165_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_015865110.1\|3080554_3081229_+	DUF3221 domain-containing protein	NA	NA	NA	NA
WP_015863641.1\|3081425_3082673_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	2.4e-62	37.1

DBSCAN-SWA_23

3089850 : 3159238

Bacillus_phage(28.57%)

transposase,integrase,protease

attL 3103100:3103138|attR 3130152:3130190

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_097353884.1\|3089850_3089991_-\|integrase	integrase	NA	NA	NA	NA
WP_015865119.1\|3091379_3092753_+\|transposase	IS1380-like element ISGsp2 family transposase	NA	NA	NA	NA
WP_041269746.1\|3092891_3093323_+	stage II sporulation protein M	NA	NA	NA	NA
WP_083767459.1\|3093316_3093937_+	hypothetical protein	NA	NA	NA	NA
WP_015865122.1\|3093961_3095692_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_015865123.1\|3097186_3098458_+	hypothetical protein	NA	NA	NA	NA
WP_015865124.1\|3098687_3099260_-\|transposase	transposase	NA	NA	NA	NA
WP_015865125.1\|3099265_3100795_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_015865126.1\|3101080_3102394_-\|transposase	transposase	NA	NA	NA	NA
WP_015865127.1\|3102538_3103030_+	hypothetical protein	NA	NA	NA	NA
3103100:3103138	attL	NA	NA	NA	NA
WP_015865128.1\|3103169_3104789_-	peptidase domain-containing protein	NA	NA	NA	NA
WP_015865129.1\|3105086_3106178_-	DUF4309 domain-containing protein	NA	NA	NA	NA
WP_015865130.1\|3106852_3107230_-	hypothetical protein	NA	NA	NA	NA
WP_015865131.1\|3107938_3109375_+	NERD domain-containing protein	NA	NA	NA	NA
WP_015865132.1\|3109996_3110701_-	hypothetical protein	NA	NA	NA	NA
WP_015865133.1\|3111052_3111430_-	hypothetical protein	NA	NA	NA	NA
WP_015865134.1\|3111681_3112725_-	hypothetical protein	NA	NA	NA	NA
WP_015865136.1\|3113528_3114497_+	hypothetical protein	NA	NA	NA	NA
WP_013399921.1\|3116007_3117207_+	DUF2726 domain-containing protein	A0A286QRE8	Streptococcus_phage	4.0e-54	34.8
WP_013399920.1\|3117458_3117830_-	hypothetical protein	NA	NA	NA	NA
WP_015865138.1\|3117831_3118221_-	hypothetical protein	NA	NA	NA	NA
WP_015863673.1\|3118689_3119880_+\|transposase	ISL3 family transposase	A0A0A8WEF4	Clostridium_phage	1.8e-30	25.2
WP_015865140.1\|3120283_3120712_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015865141.1\|3120865_3121159_-	helix-turn-helix transcriptional regulator	A0A0A0RNR0	Bacillus_phage	1.9e-05	45.8
WP_015865142.1\|3121179_3121620_-	hypothetical protein	NA	NA	NA	NA
WP_015865143.1\|3121693_3122599_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJP1	Virus_Rctr41k	2.6e-13	28.5
WP_015865144.1\|3122791_3124450_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_049757025.1\|3124545_3124737_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015865145.1\|3125186_3125765_-\|transposase	transposase	NA	NA	NA	NA
WP_015865146.1\|3125770_3127300_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_049757042.1\|3127616_3128528_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	6.8e-14	31.1
WP_015865149.1\|3128936_3129188_-	hypothetical protein	NA	NA	NA	NA
WP_015865150.1\|3129209_3129512_-	hypothetical protein	NA	NA	NA	NA
WP_015865151.1\|3129526_3130036_-	DNA repair protein RadC	NA	NA	NA	NA
WP_015865152.1\|3130226_3133025_-	S-layer protein	NA	NA	NA	NA
3130152:3130190	attR	NA	NA	NA	NA
WP_015865153.1\|3133417_3134821_-	polymerase	NA	NA	NA	NA
WP_015865154.1\|3134850_3135960_-	glycosyltransferase	NA	NA	NA	NA
WP_015865155.1\|3136033_3136759_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_015865156.1\|3136783_3138058_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	2.8e-29	24.6
WP_143420558.1\|3138279_3139398_+	polysaccharide pyruvyl transferase CsaB	NA	NA	NA	NA
WP_015865158.1\|3139421_3140594_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015865159.1\|3140660_3142184_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_015865160.1\|3142216_3144100_-	S-layer protein	G3MAW8	Bacillus_virus	5.4e-21	40.1
WP_156779802.1\|3144349_3145345_-	hypothetical protein	A0A0A8WF62	Clostridium_phage	1.0e-18	40.0
WP_015865162.1\|3145550_3149168_+	S8 family peptidase	U5J9E4	Bacillus_phage	3.0e-28	38.6
WP_041269983.1\|3149208_3151128_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	2.0e-47	37.5
WP_015865164.1\|3151203_3152619_-	SH3 domain-containing protein	A0A0N9SGH1	Paenibacillus_phage	1.5e-28	42.4
WP_015865165.1\|3153041_3154232_+\|transposase	ISL3 family transposase	A0A0A8WEF4	Clostridium_phage	7.5e-29	24.7
WP_015374612.1\|3154440_3154869_+	DUF3888 domain-containing protein	NA	NA	NA	NA
WP_015865166.1\|3155300_3156521_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.1e-54	33.2
WP_015865169.1\|3158101_3159238_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	2.6e-34	27.9

DBSCAN-SWA_24

3164664 : 3229365

Virus_Rctr71(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015865175.1\|3164664_3165747_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1P8DJG9	Virus_Rctr71	5.9e-81	47.9
WP_015865176.1\|3165957_3166302_-	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	1.1e-33	64.8
WP_015865177.1\|3166636_3167083_+	hypothetical protein	NA	NA	NA	NA
WP_015865178.1\|3167093_3167696_-	class D sortase	NA	NA	NA	NA
WP_015865179.1\|3167701_3168667_-	processed acidic surface protein	NA	NA	NA	NA
WP_015865180.1\|3168799_3170176_-	aspartate kinase	NA	NA	NA	NA
WP_015865181.1\|3170306_3170741_-	DUF1284 domain-containing protein	NA	NA	NA	NA
WP_015865182.1\|3171029_3172208_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0H3V0V2	Geobacillus_virus	1.5e-74	40.7
WP_041269750.1\|3172363_3172933_+	hypothetical protein	NA	NA	NA	NA
WP_015865184.1\|3173088_3174609_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_015865185.1\|3174680_3175019_+	DUF779 domain-containing protein	NA	NA	NA	NA
WP_015865186.1\|3175149_3176775_-	MFS transporter	NA	NA	NA	NA
WP_015865187.1\|3176762_3177695_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015865189.1\|3178102_3178657_+	DUF3990 domain-containing protein	NA	NA	NA	NA
WP_015865190.1\|3178647_3178896_+	hypothetical protein	NA	NA	NA	NA
WP_015865191.1\|3178971_3179847_-	ROK family protein	NA	NA	NA	NA
WP_041269751.1\|3180087_3180909_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_015865193.1\|3180908_3181880_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_015865194.1\|3181943_3183248_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015865195.1\|3183392_3184940_-	response regulator transcription factor	NA	NA	NA	NA
WP_015865196.1\|3186386_3187400_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015865197.1\|3187547_3188912_-	FAD-binding protein	NA	NA	NA	NA
WP_015865198.1\|3188933_3189911_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_015865199.1\|3189912_3190995_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_015865200.1\|3191013_3192210_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_015865201.1\|3192553_3192940_+	VOC family protein	NA	NA	NA	NA
WP_015865202.1\|3192975_3193959_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_015865204.1\|3194599_3195043_-	VanZ family protein	NA	NA	NA	NA
WP_015865205.1\|3195113_3196001_-	ribokinase	NA	NA	NA	NA
WP_012748845.1\|3196445_3197759_+\|transposase	transposase	NA	NA	NA	NA
WP_015865206.1\|3198093_3198441_+	DUF3870 domain-containing protein	NA	NA	NA	NA
WP_015865207.1\|3198516_3199680_+	DUF819 domain-containing protein	NA	NA	NA	NA
WP_015865208.1\|3199698_3200769_+	dipeptide epimerase	NA	NA	NA	NA
WP_015865209.1\|3200797_3201805_+	C40 family peptidase	X5JAJ3	Clostridium_phage	1.2e-16	32.2
WP_015865210.1\|3201931_3203404_-	sodium:solute symporter	NA	NA	NA	NA
WP_015865211.1\|3203400_3203601_-	DUF3311 domain-containing protein	NA	NA	NA	NA
WP_015865212.1\|3203642_3204827_-	amidohydrolase	NA	NA	NA	NA
WP_015865213.1\|3204851_3206081_-	Zn-dependent hydrolase	NA	NA	NA	NA
WP_015865214.1\|3206348_3207617_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_015865215.1\|3207738_3208722_-	DUF1861 family protein	NA	NA	NA	NA
WP_015865216.1\|3209066_3212138_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	4.0e-106	29.6
WP_015865217.1\|3212305_3213655_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.5e-94	45.0
WP_015865218.1\|3213995_3214658_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015865219.1\|3214641_3215232_+	PIN domain-containing protein	NA	NA	NA	NA
WP_041269986.1\|3215566_3215854_+	hypothetical protein	NA	NA	NA	NA
WP_015865221.1\|3217294_3217666_-	glyoxalase	NA	NA	NA	NA
WP_012748948.1\|3218126_3219575_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_041269752.1\|3219633_3219921_-	hypothetical protein	NA	NA	NA	NA
WP_156779796.1\|3220572_3222012_-	SH3 domain-containing protein	A0A0N9SGH1	Paenibacillus_phage	4.0e-16	32.6
WP_015865223.1\|3222268_3223579_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_015865224.1\|3223860_3224739_+\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_015864164.1\|3225040_3225586_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_015864903.1\|3225738_3226992_+\|transposase	IS481 family transposase	M4T586	Rhodobacter_phage	4.8e-10	25.6
WP_015864165.1\|3226984_3227785_+	AAA family ATPase	NA	NA	NA	NA
WP_012748845.1\|3228051_3229365_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_25

3238802 : 3295187

Tupanvirus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011888356.1\|3238802_3239657_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_015865236.1\|3240765_3240975_-	hypothetical protein	NA	NA	NA	NA
WP_015865237.1\|3241095_3241806_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	6.1e-26	35.4
WP_015865238.1\|3241892_3243227_-	hypothetical protein	NA	NA	NA	NA
WP_015865239.1\|3243726_3245922_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_011231306.1\|3246152_3247331_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0H3V0V2	Geobacillus_virus	1.3e-70	38.9
WP_015865241.1\|3247873_3249160_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_015865242.1\|3249368_3250976_+	SWIM zinc finger family protein	NA	NA	NA	NA
WP_015865243.1\|3250972_3253750_+	DEAD/DEAH box helicase	E7DNC5	Pneumococcus_phage	1.5e-32	26.2
WP_041269757.1\|3254186_3254414_-	hypothetical protein	NA	NA	NA	NA
WP_015865245.1\|3254443_3255415_-	DUF1861 family protein	NA	NA	NA	NA
WP_011232748.1\|3256135_3256609_+	hypothetical protein	NA	NA	NA	NA
WP_011232749.1\|3256652_3256853_-	hypothetical protein	NA	NA	NA	NA
WP_015865247.1\|3257086_3257584_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_015865248.1\|3257754_3258777_+	hypothetical protein	NA	NA	NA	NA
WP_015865249.1\|3259601_3261368_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_015865250.1\|3262755_3264003_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	36.9
WP_015865251.1\|3265527_3266085_-	hypothetical protein	NA	NA	NA	NA
WP_083767461.1\|3266068_3267427_-	ATP-binding protein	NA	NA	NA	NA
WP_015865253.1\|3268198_3269059_+	hypothetical protein	NA	NA	NA	NA
WP_108430480.1\|3269700_3270099_-	PIN domain-containing protein	NA	NA	NA	NA
WP_108430481.1\|3270117_3270420_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_041269758.1\|3270645_3270894_-	hypothetical protein	NA	NA	NA	NA
WP_015865256.1\|3271642_3271942_+	hypothetical protein	NA	NA	NA	NA
WP_041269759.1\|3272116_3272353_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015865257.1\|3272574_3272994_-	hypothetical protein	NA	NA	NA	NA
WP_015865258.1\|3273015_3273237_-	hypothetical protein	NA	NA	NA	NA
WP_015865259.1\|3273252_3273768_-	hypothetical protein	NA	NA	NA	NA
WP_015865260.1\|3274083_3274341_-	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_015865261.1\|3274309_3274705_-	hypothetical protein	NA	NA	NA	NA
WP_041269989.1\|3274707_3274983_-	DUF3467 domain-containing protein	NA	NA	NA	NA
WP_015865263.1\|3275199_3275745_-\|transposase	transposase	NA	NA	NA	NA
WP_015865264.1\|3275750_3277277_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_015865265.1\|3277691_3279311_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_015865267.1\|3280160_3281315_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	E5ES42	Bathycoccus_sp._RCC1105_virus	4.9e-17	27.6
WP_015865268.1\|3281307_3282021_-	HAD family hydrolase	NA	NA	NA	NA
WP_015865269.1\|3282017_3283001_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_041269990.1\|3282987_3283602_-	sugar transferase	NA	NA	NA	NA
WP_083767463.1\|3283709_3284141_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9L5H6	Tupanvirus	1.4e-28	47.6
WP_015865271.1\|3284184_3285324_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015865272.1\|3285339_3286620_-	nucleotide sugar dehydrogenase	A0A218MKK1	uncultured_virus	2.5e-09	23.5
WP_015865273.1\|3286616_3287630_-	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	1.6e-35	30.2
WP_083767464.1\|3287626_3288829_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015865275.1\|3289858_3291298_-	O-antigen polysaccharide polymerase Wzy family protein	NA	NA	NA	NA
WP_015865276.1\|3291317_3292451_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_015865277.1\|3292454_3293690_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_012749546.1\|3294308_3295187_-\|transposase	IS982 family transposase	NA	NA	NA	NA

DBSCAN-SWA_26

3345989 : 3453368

Bacillus_phage(17.39%)

transposase,tRNA,protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012748845.1\|3345989_3347303_-\|transposase	transposase	NA	NA	NA	NA
WP_015865329.1\|3347540_3348593_-	2,3-butanediol dehydrogenase	NA	NA	NA	NA
WP_015863990.1\|3348659_3349538_-\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_015865330.1\|3349924_3350542_-	thymidine kinase	G3MBK1	Bacillus_virus	3.0e-37	45.9
WP_015865331.1\|3350675_3351923_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	2.4e-62	36.9
WP_015865332.1\|3352514_3352715_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_015865333.1\|3352875_3354150_-	transcription termination factor Rho	NA	NA	NA	NA
WP_015865334.1\|3354413_3355376_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_015865335.1\|3355403_3356690_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_015865336.1\|3356726_3357368_-	fructose-6-phosphate aldolase	A0A1D7SNI1	Cyanophage	3.9e-48	50.2
WP_015865337.1\|3357475_3358339_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_015865338.1\|3358507_3358870_-	response regulator	W8CYM9	Bacillus_phage	1.1e-12	39.3
WP_015864206.1\|3359092_3359971_+\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_015865339.1\|3360027_3360558_+	DUF2529 domain-containing protein	NA	NA	NA	NA
WP_015865340.1\|3360614_3362210_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	7.7e-154	53.0
WP_015865341.1\|3362379_3362940_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_015865342.1\|3363168_3366426_-	methylmalonyl-CoA mutase family protein	NA	NA	NA	NA
WP_015865343.1\|3366442_3367075_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015865344.1\|3367102_3368242_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_015865345.1\|3368262_3369402_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_015865346.1\|3369423_3370275_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_015865347.1\|3370898_3372077_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_015865348.1\|3372256_3374356_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_015865349.1\|3374557_3375745_+	cardiolipin synthase	NA	NA	NA	NA
WP_015865350.1\|3375792_3375960_-	DUF1427 family protein	R4TMJ4	Halovirus	5.1e-08	61.7
WP_015865351.1\|3376121_3377792_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_015865352.1\|3377796_3378228_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_015865353.1\|3378492_3379377_-	agmatinase	NA	NA	NA	NA
WP_015865354.1\|3379392_3380220_-	polyamine aminopropyltransferase	NA	NA	NA	NA
WP_015865355.1\|3380416_3382468_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_015865356.1\|3382642_3383155_-	hypothetical protein	NA	NA	NA	NA
WP_015865357.1\|3383170_3383848_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_015865358.1\|3383978_3384164_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_015865359.1\|3384277_3385579_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.7e-45	31.4
WP_015865360.1\|3385603_3386122_-	YwgA family protein	NA	NA	NA	NA
WP_015865361.1\|3386135_3387437_-	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	3.6e-24	28.9
WP_015865362.1\|3387583_3387811_-	DUF1450 domain-containing protein	NA	NA	NA	NA
WP_012749221.1\|3388056_3389424_-\|transposase	ISLre2-like element ISGsp3 family transposase	NA	NA	NA	NA
WP_012748994.1\|3389832_3391206_-\|transposase	IS1380-like element ISGsp2 family transposase	NA	NA	NA	NA
WP_015865363.1\|3391481_3392141_+	RsfA family transcriptional regulator	A0A1D6X8E5	Bacillus_phage	8.5e-06	48.5
WP_015865364.1\|3392173_3393010_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_015865365.1\|3393093_3394068_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_015865366.1\|3394270_3395017_+	heme-dependent peroxidase	NA	NA	NA	NA
WP_015865367.1\|3395199_3395631_+	cell wall hydrolase	NA	NA	NA	NA
WP_015865368.1\|3395655_3396219_+\|coat	spore coat protein GerQ	NA	NA	NA	NA
WP_015865369.1\|3396328_3396700_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_015865370.1\|3396790_3397072_-	hypothetical protein	NA	NA	NA	NA
WP_049757046.1\|3397140_3397365_-	YwdI family protein	NA	NA	NA	NA
WP_015865372.1\|3397524_3398199_-	uracil-DNA glycosylase	A0A0B5IW78	Pandoravirus	6.5e-54	49.8
WP_015865373.1\|3398431_3399814_-\|tRNA	glycine--tRNA ligase	A0A1V0SAN4	Catovirus	5.1e-53	30.2
WP_015865374.1\|3400120_3400942_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015865375.1\|3401031_3402228_-	MFS transporter	NA	NA	NA	NA
WP_015865376.1\|3402297_3402639_-	DUF3147 family protein	NA	NA	NA	NA
WP_015865377.1\|3402626_3403052_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_015865378.1\|3403152_3404772_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_015865379.1\|3404966_3405470_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_015865380.1\|3405887_3407126_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_015865381.1\|3407245_3408379_+	alanine dehydrogenase	NA	NA	NA	NA
WP_015865382.1\|3408511_3409324_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA
WP_011231214.1\|3409402_3410281_-\|transposase	IS982-like element ISGsp1 family transposase	NA	NA	NA	NA
WP_012748972.1\|3410562_3411810_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	4.2e-62	36.9
WP_015865383.1\|3412663_3414118_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_015865385.1\|3414907_3415621_-	RNA methyltransferase	NA	NA	NA	NA
WP_015865386.1\|3415979_3417374_+	amino acid permease	NA	NA	NA	NA
WP_015865387.1\|3417630_3419880_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	6.3e-194	46.8
WP_015865388.1\|3419935_3420685_+	pyruvate formate lyase-activating protein	A0A2P0VNQ0	Tetraselmis_virus	6.6e-31	30.9
WP_015865389.1\|3420932_3422315_-	transcriptional regulator	NA	NA	NA	NA
WP_015865390.1\|3422531_3424055_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015865391.1\|3424198_3425602_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_015865392.1\|3425698_3427684_+	transcription antiterminator	NA	NA	NA	NA
WP_015865393.1\|3427674_3428127_+	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_015865394.1\|3428193_3429150_+	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
WP_015865395.1\|3429297_3430440_-	glycerate kinase	W6LM47	Streptococcus_phage	3.7e-49	40.2
WP_041269770.1\|3430470_3431727_-	GntP family permease	NA	NA	NA	NA
WP_015865397.1\|3432080_3433199_-	acyl-CoA desaturase	NA	NA	NA	NA
WP_015865398.1\|3433849_3434329_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_015865399.1\|3434413_3434569_-	CxxH/CxxC protein	NA	NA	NA	NA
WP_015865400.1\|3434645_3435860_-\|protease	serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	2.5e-11	30.2
WP_015865401.1\|3436021_3436816_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	8.5e-45	38.2
WP_015865402.1\|3436821_3437604_-	hypothetical protein	NA	NA	NA	NA
WP_015865403.1\|3437590_3438940_-	hypothetical protein	NA	NA	NA	NA
WP_015865404.1\|3438932_3440759_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	2.2e-35	33.1
WP_041269997.1\|3440768_3441476_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-45	42.0
WP_015865406.1\|3441652_3442939_-	adenylosuccinate synthase	A0A2P1EKE7	Megavirus	2.3e-71	36.4
WP_015865407.1\|3443226_3444591_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.8e-122	51.9
WP_015865408.1\|3444713_3445163_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_015865409.1\|3445159_3447136_-	DHH family phosphoesterase	NA	NA	NA	NA
WP_015865410.1\|3447183_3448110_-	YybS family protein	NA	NA	NA	NA
WP_013401907.1\|3448204_3448441_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_015865411.1\|3448498_3448993_-	single-stranded DNA-binding protein	A0A059T5E0	Listeria_phage	7.6e-52	63.1
WP_015865412.1\|3449022_3449310_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_015865413.1\|3449414_3450515_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_015865414.1\|3451477_3451675_-	DUF951 domain-containing protein	NA	NA	NA	NA
WP_015865415.1\|3451696_3452596_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_041269771.1\|3452744_3453368_+\|protease	spore protease YyaC	G3M9W0	Bacillus_virus	2.7e-22	40.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_012794

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_012794_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012794_1

26787-27218

Orphan

Consensus_repeat	Method
GTTTCAATTCCTCATAGGTAAGATAAAAAC	CRISPRCasFinder
AATTCCTCATAGGTAAGATAAAAAC	CRT
GTTTTTATCTTACCTATGAGGAATTGAAAC	PILER-CR

6 spacers

The CRISPR arrays of NC_012794_1

>merge|NC_012794|1|26787-27218|CRISPRCasFinder,CRT,PILER-CR
TCTTTCGTTCCTTATAGGTAAGATAAAAACTGCTCTTCAAAAGCTCCATACGACGTTTACGGGGCTGTTTTAATTCCTCGTAGTTAAGATAAAAACACAACAAGGTGATTATGCAAAGGCGCAAGGAGATTATGCGTTTCAATTCCTCATAGGTAAGATAAAAACTGCTCGTGTGGATGAAATTCACGGCACATCAAGTGGTTTCAATTCCTCATAGGTAAGATAAAAACGAAAGCGTTCCATTCTTAATAGGACAAATTTTAAAATAGTTTCAATTCCTCATAGGTAAGATAAAAACGAGTCTGAACGTCTAGAAGGGCTTATCTATAGCATGTTTCAATTCCTCATAGGTAAGATAAAAACTCTGCTGGATAGATTTCTTTTGCTCTTCCTCCCAGCGATGTTTCAATTCCTCATAGGTAAGATAAAAAC

>NC_012794|1|1|26787-27218|CRISPRCasFinder
TCTTTCGTTCCTTATAGGTAAGATAAAAAC	TGCTCTTCAAAAGCTCCATACGACGTTTACGGGGCT
GTTTTAATTCCTCGTAGTTAAGATAAAAAC	ACAACAAGGTGATTATGCAAAGGCGCAAGGAGATTATGC
GTTTCAATTCCTCATAGGTAAGATAAAAAC	TGCTCGTGTGGATGAAATTCACGGCACATCAAGTG
GTTTCAATTCCTCATAGGTAAGATAAAAAC	GAAAGCGTTCCATTCTTAATAGGACAAATTTTAAAATA
GTTTCAATTCCTCATAGGTAAGATAAAAAC	GAGTCTGAACGTCTAGAAGGGCTTATCTATAGCAT
GTTTCAATTCCTCATAGGTAAGATAAAAAC	TCTGCTGGATAGATTTCTTTTGCTCTTCCTCCCAGCGAT
GTTTCAATTCCTCATAGGTAAGATAAAAAC

>NC_012794|1|1|26792-27218|CRT
CGTTCCTTATAGGTAAGATAAAAAC	TGCTCTTCAAAAGCTCCATACGACGTTTACGGGGCTGTTTT
AATTCCTCGTAGTTAAGATAAAAAC	ACAACAAGGTGATTATGCAAAGGCGCAAGGAGATTATGCGTTTC
AATTCCTCATAGGTAAGATAAAAAC	TGCTCGTGTGGATGAAATTCACGGCACATCAAGTGGTTTC
AATTCCTCATAGGTAAGATAAAAAC	GAAAGCGTTCCATTCTTAATAGGACAAATTTTAAAATAGTTTC
AATTCCTCATAGGTAAGATAAAAAC	GAGTCTGAACGTCTAGAAGGGCTTATCTATAGCATGTTTC
AATTCCTCATAGGTAAGATAAAAAC	TCTGCTGGATAGATTTCTTTTGCTCTTCCTCCCAGCGATGTTTC
AATTCCTCATAGGTAAGATAAAAAC

>NC_012794|1|1|26922-27218|PILER-CR
GTTTCAATTCCTCATAGGTAAGATAAAAAC	TGCTCGTGTGGATGAAATTCACGGCACATCAAGTG
GTTTCAATTCCTCATAGGTAAGATAAAAAC	GAAAGCGTTCCATTCTTAATAGGACAAATTTTAAAATA
GTTTCAATTCCTCATAGGTAAGATAAAAAC	GAGTCTGAACGTCTAGAAGGGCTTATCTATAGCAT
GTTTCAATTCCTCATAGGTAAGATAAAAAC	TCTGCTGGATAGATTTCTTTTGCTCTTCCTCCCAGCGAT
GTTTCAATTCCTCATAGGTAAGATAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012794.1\|WP_015863241.1\|24562_24970_+\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|279710
NC_012794.1\|WP_015863240.1\|23726_24257_-\|hypothetical-protein	unknown	unknown	unknown
NC_012794.1\|WP_015863239.1\|23361_23583_-\|DUF1659-domain-containing-protein	unknown	unknown	gnl\|CDD\|377933
NC_012794.1\|WP_015863235.1\|21684_22254_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271192
NC_012794.1\|WP_015863243.1\|25883_26171_+\|hypothetical-protein	unknown	unknown	unknown
NC_012794.1\|WP_015863238.1\|23128_23341_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_012794.1\|WP_015863246.1\|30141_31455_+\|replication-protein	unknown	unknown	gnl\|CDD\|378031
NC_012794.1\|WP_015863242.1\|25102_25900_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_012794.1\|WP_156779803.1\|29083_29338_+\|hypothetical-protein	unknown	unknown	unknown
NC_012794.1\|WP_015863237.1\|22925_23075_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NC_012794.1\|WP_015863236.1\|22438_22909_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350620
NC_012794.1\|WP_015863244.1\|28165_28702_+\|hypothetical-protein	unknown	unknown	unknown
NC_012794.1\|WP_015863248.1\|33040_33892_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225212
NC_012794.1\|WP_015863234.1\|19400_20546_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444

Protein	Function_ID	Function_description	E-value
NC_012794.1\|WP_015863242.1\|25102_25900_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.28656e-48
NC_012794.1\|WP_015863248.1\|33040_33892_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.5574e-94
NC_012794.1\|WP_015863241.1\|24562_24970_+\|CopG-family-transcriptional-regulator	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00618384
NC_012794.1\|WP_015863238.1\|23128_23341_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	2.93965e-18
NC_012794.1\|WP_015863246.1\|30141_31455_+\|replication-protein	gnl\|CDD\|378031	pfam08708, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	0.00528878
NC_012794.1\|WP_015863239.1\|23361_23583_-\|DUF1659-domain-containing-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	7.53001e-07
NC_012794.1\|WP_015863236.1\|22438_22909_-\|M15-family-metallopeptidase	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	9.23944e-64
NC_012794.1\|WP_015863237.1\|22925_23075_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	4.88009e-13
NC_012794.1\|WP_015863234.1\|19400_20546_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.11469e-63
NC_012794.1\|WP_015863235.1\|21684_22254_-\|site-specific-integrase	gnl\|CDD\|271192	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	5.97135e-63

>NC_012794.1|WP_015863243.1|25883_26171_+|hypothetical-protein
MSKVDDIKNLKRQQKVITPTQVLVEAVGDETNVSSNEENNQERKEGKKVERKRVSFDLRTDLHKELKMQSILQEKNIYLLIEEALEKYLNELKNN
>NC_012794.1|WP_015863242.1|25102_25900_+|ParA-family-protein
MAITITMGIQKGGCGKSTTTGVLAYLLSRDGYRVLAIDMDSQGNLTELLSKKPANEFVEKSVLEAMQYRDPKKYIVQIDENLDLLPANNFLATFPRWIYTGITYTGDKVKYYGNPSLVLDETLEEVRNEYDFIVIDTPPSLSEQTTNALCASQYVIVLFECSNWCYSAIPNFMDSVDGARRHGRHNTRLLGILRTMNDVRRNDAKAFNEMIEEDYPNEVFKTIITRKAPIGRLSLYGFDQNNELEQALEQYKNFYKELMERVKGR
>NC_012794.1|WP_015863241.1|24562_24970_+|CopG-family-transcriptional-regulator
MKEGRCYEQHDFQVLVLSEFSKRRASTEKEKWELQREYLRLIDKIPQMWEEFVQKHKNIYDRFGYLDVIVHDDLRVERKKLKRGRPKEDTSKSHRITVRLDDELYQILQKYCRTKNISESEAIRRLIEELKWRYY
>NC_012794.1|WP_015863240.1|23726_24257_-|hypothetical-protein
MDWKEVKQFVSAGQAFVPVNLENRGDSVELFFRDGETKQLDMQSSLFLKRLLTFFGTSAAINRHRYGELVGKKQLVPIVLSYGFTIIPFNVREPIGRQSRTGWFVSREIERFQRQSPHVTVVHLSRHCIPVFHSHKFCLDQLKNAKWIEMCYGEIHEPHRRQWIGGSAALCEMASI
>NC_012794.1|WP_015863239.1|23361_23583_-|DUF1659-domain-containing-protein
MAASEMVTGRKLVLVLYEGKDKDGKDIFRNQTFNVKYDSDIQSMYDAAAAIASLCNGALSRVETTVTSHIFND
>NC_012794.1|WP_015863238.1|23128_23341_-|DUF2922-domain-containing-protein
MKTLELTFNAEFGTARIAVRNPKEPINPAQVKAAMNQLAAANVLKSANGDLLSPKSARVIDRETQDIELP
>NC_012794.1|WP_015863237.1|22925_23075_-|YvrJ-family-protein
MDLFSMISEVSFPILVSIYLLYRMETKLDQLTKSIQDLTVALSRSPQNL
>NC_012794.1|WP_015863236.1|22438_22909_-|M15-family-metallopeptidase
MNASDLLNRAEKKLAGLHPVVAEKARKLIKEAYSEGIYIIITQGFRTIEEQNSLYAQGRTKPGKIVTNARGGYSYHNFGLAFDFCVCDVVKGSLEPNWKVDRRWLRVGEIGKSLGLEWGGDWKSFKDYPHFQYTFGLSRAQLRSGKKPPIVNEVKR
>NC_012794.1|WP_015863235.1|21684_22254_-|site-specific-integrase
MHTVHPIKDREKIEAMKKILRASSLRDELLFTIGINTGLRISDILSLKVGDVRNKKGVVDRLEIVEKKTKKRRIVALNKKTCRLIELYLEKERPTARNDEPLFRSQKGDRAISRQHAHYILNRAAKAVGIMERIGTHSLRKTFGYFAYKQGTDLAMIQKLLNHSSQAETLRYIGITQEQMDEVMLKLDL
>NC_012794.1|WP_015863234.1|19400_20546_-|replication-initiation-protein
MQVLDIQQYNKAVTKSNALIEANYKLSTLEQKIILYLISQIHKDDDDFKMYRLPIQEFSEMLGYRGSPKYTELREITKNLMRKVLEIREGQKLKQLSWVSYVEYDERSGFVSLSFDPRLKPYLLQLKREFTTYRLKNVMELKSSYSIRMYELLKRWQYMKEVEISLDDLRMMVGAADKYHQYHNFKKRVLTPAQQEILEKTDIWFKYQEVRKKRKVIALRFYIQEKSTIDQVVVPIEEKTENNATDQYLKFLAVLQAYDRYITEKQFIKIALLAQKVFGENWLDEVIKTTREILQRGDIREPIAFLTYLLNEKLERVRIGSDHNEVVVNKKVRVVRGEAVPDWLEDYQKKLAESSQTRDTDEEDIEQIRRELEERLKKYKN
>NC_012794.1|WP_015863244.1|28165_28702_+|hypothetical-protein
MIQRYVSEERFLELLERVSKLESKVKELEESYIKNNKVIKRNRVGEYNLKIVYPGIFKHIDNPSAGFPKNKKPLAEQMTLGTKVFIYVTSPYKKIIGLAEPIQNMIETDNERWPYNVPLKWVIGPCVPGVRIKDVDLDIRPRPGDTNFELTEEEAKRIIDILKRQKPLNDDNIDDLLK
>NC_012794.1|WP_156779803.1|29083_29338_+|hypothetical-protein
MEWLKVIDGYFGDNAFYMRSIAGFPLEGRFKATGLRSLARLIDENEPFSFIMGSNTMIHVPVELNRQLKQELFMIAEKLEAEKE
>NC_012794.1|WP_015863246.1|30141_31455_+|replication-protein
MENLKLAVAPPLERAKHHVLFHHHGASGWITIAKKDQDGTWRQYHYRPEELSTELSKWLGEDVYFSQNTFYKPQRRIENIRQLRALYVDVDCHVMNYDPDWVMGKLDIEIFQDNILPNPNIIIFSGRGLVCVWLLEPVPYQALPLWKAVQNYFCDQLNYVGADKKSIDPTRVFRIDGTINSKNKKEVVVEYRHDYRYVLRDLQYEYLPELTPNQPPKRGRKPKIVHLHNVRTLHYARLLDLVKLAELRDYDLKGYRELFCFLYRYWSCCFTDDPEEALQQMLEFNSEFKEPLPEHEVIRATRSAEKAWRAKSDAKANEEAIKKGYPGAGYNLKNSTIIRWFDITPEEQRHLQTIIDGNEKRRRKRERDKKRMDEVRREQGAKTREEYLEEQKEKTEDRVWQLQKAMERHPNATNKQLAEMLQLSVRRIQQLKKMITN
>NC_012794.1|WP_015863248.1|33040_33892_+|MBL-fold-metallo-hydrolase
MKQLKLFVSFVMAFFFMVVPMSGTTNAATKNMYVHFINVGQGDSIYIKAPNGEDILIDGGNKDGSDVVAYLKKQKVKDIEFMIATHPDADHIGGLDEVLKAFPVKNVYAPKVSHTSQAYKDFLTAVKNKKLTIKTAKADVTLPVKGITAKFVGPVKTYSNSDLNDWSAVLKITYGKKSFLFTGDAEAKAEADMVKAKKDLRADVLKVGHHGAKTSTSTTLLKAVKPTYAVISVGKNNSYGHPTSEVLNRLKSYKVSIFRTDKQGTIIATTNGTTLSFNVKPLK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_012794_1	1.1\|26817\|36\|NC_012794\|CRISPRCasFinder	26817-26852	36	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	26817-26852	0	1.0
NC_012794_1	1.2\|26883\|39\|NC_012794\|CRISPRCasFinder	26883-26921	39	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	26883-26921	0	1.0
NC_012794_1	1.3\|26952\|35\|NC_012794\|CRISPRCasFinder,PILER-CR	26952-26986	35	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	26952-26986	0	1.0
NC_012794_1	1.4\|27017\|38\|NC_012794\|CRISPRCasFinder,PILER-CR	27017-27054	38	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	27017-27054	0	1.0
NC_012794_1	1.5\|27085\|35\|NC_012794\|CRISPRCasFinder,PILER-CR	27085-27119	35	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	27085-27119	0	1.0
NC_012794_1	1.6\|27150\|39\|NC_012794\|CRISPRCasFinder,PILER-CR	27150-27188	39	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	27150-27188	0	1.0
NC_012794_1	1.7\|26817\|41\|NC_012794\|CRT	26817-26857	41	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	26817-26857	0	1.0
NC_012794_1	1.8\|26883\|44\|NC_012794\|CRT	26883-26926	44	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	26883-26926	0	1.0
NC_012794_1	1.9\|26952\|40\|NC_012794\|CRT	26952-26991	40	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	26952-26991	0	1.0
NC_012794_1	1.10\|27017\|43\|NC_012794\|CRT	27017-27059	43	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	27017-27059	0	1.0
NC_012794_1	1.11\|27085\|40\|NC_012794\|CRT	27085-27124	40	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	27085-27124	0	1.0
NC_012794_1	1.12\|27150\|44\|NC_012794\|CRT	27150-27193	44	NC_012794	Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence	27150-27193	0	1.0
NC_012794_1	1.1\|26817\|36\|NC_012794\|CRISPRCasFinder	26817-26852	36	MN334766	Serratia phage PCH45, complete genome	1916-1951	7	0.806

1. spacer 1.1|26817|36|NC_012794|CRISPRCasFinder matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcttcaaaagctccatacgacgtttacggggct	CRISPR spacer
tgctcttcaaaagctccatacgacgtttacggggct	Protospacer
************************************

2. spacer 1.2|26883|39|NC_012794|CRISPRCasFinder matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

acaacaaggtgattatgcaaaggcgcaaggagattatgc	CRISPR spacer
acaacaaggtgattatgcaaaggcgcaaggagattatgc	Protospacer
***************************************

3. spacer 1.3|26952|35|NC_012794|CRISPRCasFinder,PILER-CR matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcgtgtggatgaaattcacggcacatcaagtg	CRISPR spacer
tgctcgtgtggatgaaattcacggcacatcaagtg	Protospacer
***********************************

4. spacer 1.4|27017|38|NC_012794|CRISPRCasFinder,PILER-CR matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagcgttccattcttaataggacaaattttaaaata	CRISPR spacer
gaaagcgttccattcttaataggacaaattttaaaata	Protospacer
**************************************

5. spacer 1.5|27085|35|NC_012794|CRISPRCasFinder,PILER-CR matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

gagtctgaacgtctagaagggcttatctatagcat	CRISPR spacer
gagtctgaacgtctagaagggcttatctatagcat	Protospacer
***********************************

6. spacer 1.6|27150|39|NC_012794|CRISPRCasFinder,PILER-CR matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

tctgctggatagatttcttttgctcttcctcccagcgat	CRISPR spacer
tctgctggatagatttcttttgctcttcctcccagcgat	Protospacer
***************************************

7. spacer 1.7|26817|41|NC_012794|CRT matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcttcaaaagctccatacgacgtttacggggctgtttt	CRISPR spacer
tgctcttcaaaagctccatacgacgtttacggggctgtttt	Protospacer
*****************************************

8. spacer 1.8|26883|44|NC_012794|CRT matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

acaacaaggtgattatgcaaaggcgcaaggagattatgcgtttc	CRISPR spacer
acaacaaggtgattatgcaaaggcgcaaggagattatgcgtttc	Protospacer
********************************************

9. spacer 1.9|26952|40|NC_012794|CRT matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

tgctcgtgtggatgaaattcacggcacatcaagtggtttc	CRISPR spacer
tgctcgtgtggatgaaattcacggcacatcaagtggtttc	Protospacer
****************************************

10. spacer 1.10|27017|43|NC_012794|CRT matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

gaaagcgttccattcttaataggacaaattttaaaatagtttc	CRISPR spacer
gaaagcgttccattcttaataggacaaattttaaaatagtttc	Protospacer
*******************************************

11. spacer 1.11|27085|40|NC_012794|CRT matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

gagtctgaacgtctagaagggcttatctatagcatgtttc	CRISPR spacer
gagtctgaacgtctagaagggcttatctatagcatgtttc	Protospacer
****************************************

12. spacer 1.12|27150|44|NC_012794|CRT matches to NC_012794 (Geobacillus sp. WCH70 plasmid pWCH7001, complete sequence) position: , mismatch: 0, identity: 1.0

tctgctggatagatttcttttgctcttcctcccagcgatgtttc	CRISPR spacer
tctgctggatagatttcttttgctcttcctcccagcgatgtttc	Protospacer
********************************************

13. spacer 1.1|26817|36|NC_012794|CRISPRCasFinder matches to MN334766 (Serratia phage PCH45, complete genome) position: , mismatch: 7, identity: 0.806

tgctc-ttcaaaagctccatacgacgtttacggggct	CRISPR spacer
-actcgttcagaagctctatacgacgtttacggattt	Protospacer
 .*** ****.******.***************. .*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012793

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_012794

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection