CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_012851	Ralstonia pickettii 12D plasmid pRp12D03, complete sequence	0 crisprs	NA	0	1
NC_012857	Ralstonia pickettii 12D chromosome 2, complete sequence	0 crisprs	csa3,cas3	0	0
NC_012849	Ralstonia pickettii 12D plasmid pRp12D02, complete sequence	1 crisprs	csa3	2	0
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	0 crisprs	DEDDh,csa3,PD-DExK,DinG,WYL,cas3	0	7
NC_012855	Ralstonia pickettii 12D plasmid pRp12D01, complete sequence	1 crisprs	DEDDh	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10018 : 17685

Halomonas_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004636921.1\|10018_10822_-	DUF4942 domain-containing protein	A0A1J0GUW2	Halomonas_phage	7.9e-22	26.7
WP_004636923.1\|10833_11058_-	hypothetical protein	A0A0X8WQU3	Ralstonia_phage	3.2e-05	43.7
WP_004636925.1\|11121_11355_-	hypothetical protein	NA	NA	NA	NA
WP_009242025.1\|11452_13324_-	chromosome partitioning protein ParB	G8DH78	Emiliania_huxleyi_virus	1.1e-26	28.7
WP_009242026.1\|13389_14217_-	DUF945 domain-containing protein	A0A1S6UA20	Serratia_phage	2.8e-46	39.6
WP_004636209.1\|14987_15428_+	hypothetical protein	NA	NA	NA	NA
WP_009242029.1\|15625_15832_+	hypothetical protein	A0A1B1IVH0	uncultured_Mediterranean_phage	1.2e-06	46.7
WP_009242030.1\|15936_16284_-	hypothetical protein	NA	NA	NA	NA
WP_004636214.1\|16309_16543_-	hypothetical protein	NA	NA	NA	NA
WP_009242031.1\|16599_16809_-	DUF3717 domain-containing protein	NA	NA	NA	NA
WP_041668849.1\|16805_17108_-	hypothetical protein	NA	NA	NA	NA
WP_009242032.1\|17118_17685_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.1e-17	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_012849

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CRISPR-Cas detection and classification

Crispr_ID: NC_012849_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012849_1

73917-74098

Orphan

Consensus_repeat	Method
GGTGAACGGATTTGGGGA	PILER-CR

2 spacers

The CRISPR arrays of NC_012849_1

>merge|NC_012849|1|73917-74098|PILER-CR
GGTGAACAGATTTGGGGAGAGCCACCCTAGAGTACAGCCCAGGTGCGACACACGAGACCGTAGGTTGGACCCGCTTGGTGAACGGATTTGGGGAGATGAAAGGTGAAAGGATTTGGGGCGCATGCGAGCAGGCACTCCCGCACAAATCCATGCCTGCAAACATAGGTGAAAGGATTTGGGGA

>NC_012849|1|1|73917-74098|PILER-CR
GGTGAACAGATTTGGGGA	GAGCCACCCTAGAGTACAGCCCAGGTGCGACACACGAGACCGTAGGTTGGACCCGCTT
GGTGAACGGATTTGGGGA	GATGAAAGGTGAAAGGATTTGGGGCGCATGCGAGCAGGCACTCCCGCACAAATCCATGCCTGCAAACATA
GGTGAAAGGATTTGGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012849.1\|WP_004635272.1\|62633_63395_+\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_004635269.1\|64654_67054_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NC_012849.1\|WP_012435617.1\|80501_81008_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_012435612.1\|77677_78151_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_012435606.1\|68161_68749_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_012435618.1\|81015_82872_-\|conjugative-transfer-system-coupling-protein-TraD	unknown	unknown	gnl\|CDD\|274760
NC_012849.1\|WP_004635264.1\|67979_68165_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_004635270.1\|63539_64265_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_012435616.1\|80281_80530_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_012435605.1\|62155_62548_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|259856
NC_012849.1\|WP_012435608.1\|71799_72498_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_012849.1\|WP_012435615.1\|79664_80282_-\|DUF4400-domain-containing-protein	unknown	unknown	gnl\|CDD\|379573
NC_012849.1\|WP_012755739.1\|78287_78590_-\|flagellar-transcriptional-regulator-FlhD	unknown	unknown	gnl\|CDD\|368356
NC_012849.1\|WP_012435614.1\|78738_79605_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_012435607.1\|68966_71081_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|372139
NC_012849.1\|WP_012435610.1\|74536_75844_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|376444
NC_012849.1\|WP_012435611.1\|75848_77570_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_012849.1\|WP_012435609.1\|72490_73567_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|272946
NC_012849.1\|WP_004635267.1\|67070_67925_-\|hypothetical-protein	unknown	unknown	unknown
NC_012849.1\|WP_012435619.1\|82868_84131_-\|type-VI-secretion-protein	unknown	unknown	gnl\|CDD\|377859

Protein	Function_ID	Function_description	E-value
NC_012849.1\|WP_004635269.1\|64654_67054_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	6.88814e-21
NC_012849.1\|WP_012435608.1\|71799_72498_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.51722e-36
NC_012849.1\|WP_012435615.1\|79664_80282_-\|DUF4400-domain-containing-protein	gnl\|CDD\|379573	pfam14348, DUF4400, Domain of unknown function (DUF4400). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 209 and 249 amino acids in length. There is a single completely conserved residue P that may be functionally important.	1.93426e-34
NC_012849.1\|WP_012755739.1\|78287_78590_-\|flagellar-transcriptional-regulator-FlhD	gnl\|CDD\|368356	pfam05247, FlhD, Flagellar transcriptional activator (FlhD). This family consists of several bacterial flagellar transcriptional activator (FlhD) proteins. FlhD combines with FlhC to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.	1.5947e-16
NC_012849.1\|WP_012435618.1\|81015_82872_-\|conjugative-transfer-system-coupling-protein-TraD	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	0
NC_012849.1\|WP_012435607.1\|68966_71081_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|372139	pfam12482, DUF3701, Phage integrase protein. This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with pfam00589.	5.03641e-26
NC_012849.1\|WP_012435610.1\|74536_75844_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	2.34715e-25
NC_012849.1\|WP_012435611.1\|75848_77570_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	4.94728e-86
NC_012849.1\|WP_012435609.1\|72490_73567_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	1.05477e-13
NC_012849.1\|WP_012435619.1\|82868_84131_-\|type-VI-secretion-protein	gnl\|CDD\|377859	pfam07514, TraI_2, Putative helicase. Some members of this family have been annotated as helicases.	6.52048e-09
NC_012849.1\|WP_012435605.1\|62155_62548_+\|DNA-binding-protein	gnl\|CDD\|259856	cd13834, HU_like, DNA-binding proteins similar to HU domains. This subfamily consists of DNA-binding proteins similar to HU domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta).	1.57353e-33

>NC_012849.1|WP_012435609.1|72490_73567_+|ParB/RepB/Spo0J-family-partition-protein
MSKNTKDTKVQGASTTKGQPIPKLTLASGLIKGFKNEQQAIQTREREQEPPPASPQEQESQPVTETTANTVEPAAGPTASAVGGRKSIAIADCVSNPYNPRVFYPEAKIQELALTLQREGQIEAIKFTRLPQFPGKYVIIDGERRLRAKRSLGETHIDAEERHDVLPIDLYTTAYRANNDHERQSIFDDAIAWQQLIEQQVVADQNSLAEKVTKDKAYVSKVLSLNALPRAILERMAESADRVGLQAAYCLKLIFDRVGEEGADRHLTAVIEGKRTVRELELILRNLQGPGATAKRSRTRYHQLFDFKADGVQRGQLKTFPDGRISLELKEIPADKQEALAEKLKALVDQELVEPSAG
>NC_012849.1|WP_012435608.1|71799_72498_+|ParA-family-protein
MSAFTIAIANQKGGVGKTTLSLNLASAFQSGGTDVALVDADPQNTSLRWATSGEEPLKISVASLAPAGSKIGNEIQKLQGKYDLVVVDCPGNLEDPRTPEVLGIADFCLIPMGPSPADLFSTLAMINEIKNIKRRINPELASALMLNNINGRTRMREEILSLLNQQDVGTHLLQSQIAQREIYRQLFALGTTAHECGRYMKGLKEARAEIESLVLELTQHITQSRSQKVENV
>NC_012849.1|WP_012435607.1|68966_71081_+|tyrosine-type-recombinase/integrase
MDPLDPDHNPEPPPSLETLQSEIKRTRPTRRRVVVRRHLHRGHFAFLRAVVQGLDARPMWARYLAIDGELEAQAELTQETFVAHPKVRRMTAWLRAELAAAVRRAGHYGKVRLIRIDLSGLAQRGPALPALEEFALENGLDDFSIEEQLEAYRERFGDAVQRAERRTKLMERQLRLLADLEQVLAEPVRVDDHCHAWLAAGVADRLEAAGVATIGTLIDRINSLGGGWFRALRGVGEKKAHAIERFLRANADTLARKLGEHARIPRRQLTAHERDRVVASGTGLLPLEKIVVPAALDGSNGRFRRPPVECLLDAQNDYEAVLTWLRSKPGLPPAEIARRRTGRRDVITEPGPLDWLHYLSNTQRSYRKEAERFLLWAIWIRRKPLSSMTTEDCVAYRDFLADVPDDWCAPRSRERWTPSWKPFEGKLSPESQAYALTVLQNLYRYLNDKNYLSGNPWGGVRATNGGKPQLDVGRSLTEDQWAFVVERLFLLERTSSNLRLQVALPLLYATGLRLAEIVGATTADLAWRSLALPRSGERMDGWWLTVVGKGSRVREVPVPDEVVHALGAYLDSRGFPSDPAQIREPVALLGHATDQAERAPWAKRDTASPAAPLTPGVLYRQIKRFFQACATELEATDPQGAARLNEASTHWLRHSHASHAIAAGTPVEIMQQNLGHKSLDTTTVYVTSEEAIRMKELRGFWKRS
>NC_012849.1|WP_012435606.1|68161_68749_-|hypothetical-protein
MAAQRQDWDTAESRCAERRELAGAAASAAVAVEEGVTVRFRPIGRTDVDAADRWTFGGYAPGWLWSRELTRARRRPRRVEAAVYAELPDHTHVLCGLILGRISNRHVVASIHLLSRAPAPNPLQGRFAKIAVRYLEFCAAAFDCTTASLQRPIPELVDFYKSLGYSRVVEKKGKIERLERDLGAVLSAMRKGDQP
>NC_012849.1|WP_004635264.1|67979_68165_-|hypothetical-protein
MKPTARKIRRQALLAEKPEQVAARLAVFAKLTREQAVARRSVVEPKVAGSVLAGRRVRVAG
>NC_012849.1|WP_004635267.1|67070_67925_-|hypothetical-protein
MTASVLNHDLSGDFERLLTLVMQLVESQAGQQIPVDQLWMNDAQVLGKKFCYHVASLRLIAQPVQIDIAGYGADLHIDHSSVMILARAALETYLTFAYIYGSKDVEVRQFRHMIWRRAGLLDRQAYPARAPEHQQKLADEKTRIDQLQIEIEAHGVWQQYSEPMRKKVLKGEWRAGQSWIDTGIAAGFHPVYIRQIYSFLCGYAHSSWLSILQIRDAQALCDQEAMAARFVSVALVFMSFFATSYVALFPQAEAVLASNTEAANLAQRWHLTADRQSALYGTTN
>NC_012849.1|WP_004635269.1|64654_67054_-|restriction-endonuclease
MPADQNPPAKQFPRNERVPVARAVATTIEHATAAQVKALAEPFKGTSVGQRFFGPGWIGEDGVACIVFIAQDRDTIQRLRRQRTCVAIGWRWNNTPSMVFSFTLMTEGKNPHPHTRWMRPSADPVVAAIRQRGRFRMIAVSPEGYQTVWFEAQLHSGFGETAPSLQGMEQQWQHPVPGLQGSREGQRFDPFERERKADTTDAAPAIPLWAEPASDVWSELNYDGPWAGDLNATDKARVAWGRQVYRNRRLAAGFVRGIAERQAYDRVPPVVTEEGNWLGEGIIAEQGRVLVARAPLIGRWLAALAGPAPDAEAAYRACVEVLHDTYALFCLLDKLIPLLNDAGDQMLSEAARWTFEAALLDDKITQGGTHRPWFANTGQHGLELRSAPFNLEASLSDIEEMWRSGLDMLDLIDAGQRLGPNDFPVPLSDVCEAMRGVALDGTEDEAEATIQAMLREAQEARQWTIPWGARVEVAFGPFVAVRIFENQGEFACQFLDAAQRYHHVAIGIASDPPRATGGRLIRPRDDDGEVTWNTDAELSLQLIAAAIIRDFLVVEERESLFGTRTTTRRSRGRDLTTVVYLPRVRYSRPNLRQATQHAHESGRAPHAVTQHLRRAATTSATQRFLAQRYGMHLPEGFTFVRPHTRGAMAEAERVRVYRSRSASRMIYEEVSTAPEGARPAWFEFERDCMQLLRERGLRVIHQAASRDGDGGVDLYAVDESGQSWIVQCKCWAAHRSVGPEIVRELHGAIAFADRGSSGTSKGIVITTSRFTSGAAEVGREFGFELIDGQQFAQWRQNRH
>NC_012849.1|WP_004635270.1|63539_64265_-|hypothetical-protein
MKFYHFTSVSYAETILSMGISRGHVKHGDGSIRNSVVWLTTDPDADGHGLTTGDKTLTARDMEYLTRVDGVAPKNGIVMNKTRVRLTVEMSADTATLMPFVEYYARRGEKPDEAKLMGLSAYVENPWRLPLTRRRHLLKSTTTKEGTWWLSFAPITASEITRVEYNSPAGFVDYDFEAHGRQHFHDAGFVVPSAATLQSLHPLVPCDYPFEKAKAFAFCLDTKRVRRGDWCAGVRNEPPER
>NC_012849.1|WP_004635272.1|62633_63395_+|hypothetical-protein
MSLFPQRSADVRRYKFINWNVVLKPALQEKFEKVITAAEQAGYLERLYVRVEREHRTVTLFPGQHPVGASLRKQGSTAAEHGAALVFSQAKTGNVAVLLYPYESEFMRQPEKLIVWRVFVGPNDVTQSVIDAAVADAFRYWRVSSVLDGGSRWDRWRIGMLRRRDRYQSAEKAMTTRPSLVARAVGAFLAWWPVAAFVAFSALVTVVTGWHDFSDKFGAAFHSTSTAAKESTTTSKTGRASEAAAAPSTAQDR
>NC_012849.1|WP_012435605.1|62155_62548_+|DNA-binding-protein
MATKSKTAAKKAAPAKKTAAAAAPTIKPLKDTFTKASLVSHLAEQTELEAKAVKSVLLHLENTILSALHKKGAGEFTLPGLFKVVSVKVPATKRRFGKNPFTGQEQWFEAKPASVRVKVRPLKKVKDAAQ
>NC_012849.1|WP_012435610.1|74536_75844_+|RepB-family-plasmid-replication-initiator-protein
MARVPEAKKGSQIALFQQQEAPEPFKKAVQAIHVSPVGSALSLQQRRIFNALIKNAIEQRLAGRETNNTFQVSIPQMMAALDLTTKDNAYIKETAKSLMRTVVDWDQLNSDGTSTWTGSTLIAGAKIVGSVLSYSFAPQISEELLDPQRYAMIDMRIAKLFRRSYSLALWENTVRFERIGLTARIPLATFRNLILGREESETKYKEYKIFKRAVLTPSIAEINDVSDHEIELIEHKVGRTVGEIQFKISRKVSALEEEPHQDLVNTVVKFGVPHSEAKRLVRTFGAERILEAISYTRARQAKKGVPPLDNIPAYFRKSLTEDWGKGAGKAESAGAGQQQQKPLARSPKNEEDARAQYLAARIPHAQGYFGELSADDQSAMLSRYNDQCSVKELKVVAGKKPSKAAESNFFEWVAHETWGEPNAGEILNFVLSGKV
>NC_012849.1|WP_012435611.1|75848_77570_-|ATP-dependent-helicase
MPTSILDELNPSQREVADLRLHCVAVACPGAGKTKTIATKAAILLADPACRVGAVTFNKEAATELQERIRALAGPASKARLLAGTFHGLAFKQLTPKGCKQQDIANEGDQLALVAQALKEADLDWKEEAALAAIEAIKMDFGRVPPGSVEERLYSAYQQALARNGKLDFQDMLCMAIEGMERGTISPYPFTHLLVDEFQDTDPLQYQWVAQHARSGSIVTVVGDDDQSIYGFRAALGFRGMESFIKEFDARPVILGENYRCKSEILAAADNVIRNNKERIRKDLVAARGPGGHISFRRFDDEYAEAVNAVEALAASMRASKSAAILARTNRILDPVEAVCRSHGVKYFRASGKSILSRAEAALMCNLLELIQKTKTNGLDAVLAFAGVGAQDLKTLHSRIGPSLEQRPRKELVEMGLAESTADTYRELMKRLAEWRGLCDRKFYPLVLEGVYEWMAQRAKADTAKRAVTTTYDVLSRLNGPFSDRIAFLRRENNVPAADALILTTMHNSKGLEWDHVCIIRAEETVVPNEKSTESEERRLFYVAMTRARDRLEMSTAKKNPTSRFVLEAGVSK
>NC_012849.1|WP_012435612.1|77677_78151_-|hypothetical-protein
MNSQATLTKLSVAWTLVRHIAFWGGWAFRLLVVVPSVAFCLLLAIHSDFSFSAIPRELLQSVADRAKYPAAPAGYITMQTCKDTTSAVKGLPPPQALCKTFGFEQQSIDASAREAGMNLALMYSIFALLGWGWYLFSGSFNDSLRAFRSSLQKVRRA
>NC_012849.1|WP_012755739.1|78287_78590_-|flagellar-transcriptional-regulator-FlhD
MEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEALLTLDEEACVRMAQTNLFLCRIHFDDRVLAALLAGPRLELLESPASAGKAAPAIA
>NC_012849.1|WP_012435614.1|78738_79605_-|hypothetical-protein
MQNTIDKVAGADNSDVAVTTNGDTLPNDEVESSAAANTAGATTPSDVEQELNEMESAVDALQRDSLISAADADSQKGEVARTRKMFREMSPDDRAKIVSRRRELGRQILTRQLAGASVVETMVKLNHTRLKPLFEQWWPFMNRMTINLTRFGHSTFTASELSTITKHFETQMANLEAYVDEQLRVAEGYRAAREKDMESSGAMIWKPSVTKPSMEMVVEAYSPFSMRALGVLNKFDRAMDHFDFMVWNAIRDQSDVNEEVNRFLRKFQPLAIRCYTTHLRLMTTVRNI
>NC_012849.1|WP_012435615.1|79664_80282_-|DUF4400-domain-containing-protein
MADSRFASHLRLWTLVAPIMLAVGCPFLEGDTTFEISDAELASVELNLGDTAATRAADRTNTQFRHWFVESGAMKAWTSTLPNSTDISDAGATDMSNAWLRHFWMSIYRGIFRANVALSWAFGAFVFGMAMMNDGAVSRRIKAAAAGFASPVAFHVAAHATVITLGLGTSALLFPFSLNTMWWSVGALVLGVLGWRMAASFHVGR
>NC_012849.1|WP_012435616.1|80281_80530_-|hypothetical-protein
MSLKNSLIAKVSRLDLDTVGRIELAARGYLQELAEIPPEYARGREALCFALQSVALRRPALFWFGLASVIVTPALLILRVVL
>NC_012849.1|WP_012435617.1|80501_81008_-|hypothetical-protein
MPSLFRQVVNQYKLSSKLAPVFIAFPELDDSCKRVVDFLGVNFRVREEPLVAEMLMDALSAYRQARKEGDANIAFVRGLFTRSHEIFSMRYAAFKGEKYHVWAPLQEPIPDFEARQSAGYQCRMVDEPCPDDVTPRSAAMQMAARVLSGHVFCRYFEEYDVAEEFAHR
>NC_012849.1|WP_012435618.1|81015_82872_-|conjugative-transfer-system-coupling-protein-TraD
MNYVSHFRPIFEARAAVGWLIGLILLPLSGMPHAWAFAVICALFLVARAYQVRKALAFRMSISTRWLTLIQIDVLLRTSARMRADLDAMYFGNGFEWTQRHCQIAHDILRMPSTEIPGLPKWLPPKVAKRIETAFAPPNSVPDTAPQGKSWIHGMEPNKIEVPLHYKALGGHTAVSGTTGAGKTKTYELIATQVIHSPNKDVLIIVDPKNDKDFKKRVERECKRAGRKFLYWKQAAPSESIRMNPVENWSQPSEIASRVSQLMEEGPFRDFAFLFIDRAVKGELYVGDKPNLRSILNYAQSGINGLLDRCLRRFFPEAGMLDWEDEARGFLQRIAQKGGVDPLQGMVQLYVDNFAKKGLGHETIDGLVATFVHDREHYMRIIASALPLLQMLATGETGLMLAPKADDFTDDREIWDIERVIKQKAVLYVGLDSMSNSIVAKAIASMLLADVASVAGAIYNFYETPPDIVLLVDEVAEAINEQVIQILNKGRGAGFRSFVAFQSRSDLEAKLGSAAKMLQVLGNLNNQIILRLEDTDTAQWFSDKVGETAIRNIVVSSSASTGSESHVGEFSGSVSRSTQLEKAPLIPPRLITELPNLQYFMRISGGSVYQGRIPIIQG
>NC_012849.1|WP_012435619.1|82868_84131_-|type-VI-secretion-protein
MNHTPMPIAALTATLGSRLDLVRQYANESSSADFERKWLSVLETCADWYSSMPLRPEQHPEPGGAFRATVETVYYALRLSGGQKFGADQPSERRRKLEPQYLYAVFLAACCTWLDEPFRHFQFYRLRDQAEWSPAAHGAFSAWLEGGEYRVQRREAPLPIERMRTALLARSILGNTRLELLESMVQTDLFGAINPESRPAGTESLLHKVLRQAVAVTCDTEDKARRARFAPDTTPIPPAKTLEDGFAAHAQPAPAAEKRPSQPKAKAAKSEPSAADSVSALFEQAKATPTSTASASPETPAPTSEKPNTQSSLFDLDSMQVPKEPTVKQEDPFAEILSSASTLMREFFRALVQDVESGKVAVHWAEKGLVLQKRILGSYGIASETLVDNLRKLNLLASSQGADIVLVERIGSLILARPQQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_012849_1	1.1\|73935\|58\|NC_012849\|PILER-CR	73935-73992	58	NC_012849	Ralstonia pickettii 12D plasmid pRp12D02, complete sequence	73935-73992	0	1.0
NC_012849_1	1.2\|74011\|70\|NC_012849\|PILER-CR	74011-74080	70	NC_012849	Ralstonia pickettii 12D plasmid pRp12D02, complete sequence	74011-74080	10	0.857

1. spacer 1.1|73935|58|NC_012849|PILER-CR matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 0, identity: 1.0

gagccaccctagagtacagcccaggtgcgacacacgagaccgtaggttggacccgctt	CRISPR spacer
gagccaccctagagtacagcccaggtgcgacacacgagaccgtaggttggacccgctt	Protospacer
**********************************************************

2. spacer 1.2|74011|70|NC_012849|PILER-CR matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 10, identity: 0.857

gatgaaaggtgaaaggatttggggcgcatgcgagcaggcactcccgcacaaatccatgcc	CRISPR spacer
gatgaaaggtgaaaggatttggggcgcatgcgagcaggcactcccgcacaaatccatgcc	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_012856

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

608828 : 621135

Enterobacteria_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012761335.1\|608828_609893_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-82	45.4
WP_012761336.1\|609882_610800_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.3e-24	31.7
WP_012761337.1\|610810_611362_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.4e-46	53.7
WP_012761338.1\|611442_613326_+	polysaccharide biosynthesis protein	K7Y9E1	Megavirus	5.9e-20	27.3
WP_012761339.1\|613673_615035_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.0e-74	37.7
WP_012761340.1\|615049_616000_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	1.1e-86	47.6
WP_012761341.1\|616033_617035_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A1V0SAI8	Catovirus	9.8e-38	34.4
WP_012761342.1\|617031_618180_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L470	Tupanvirus	8.9e-27	32.8
WP_012761343.1\|618176_619070_+	aldo/keto reductase	NA	NA	NA	NA
WP_012761344.1\|619069_619840_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_012761345.1\|619845_621135_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	A0A249XSK4	Mycobacterium_phage	9.4e-09	25.0

DBSCAN-SWA_2

895328 : 903606

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012761560.1\|895328_896693_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	2.4e-79	39.1
WP_012761561.1\|896731_897664_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	2.8e-15	27.7
WP_012761562.1\|897682_898678_+	ADP-glyceromanno-heptose 6-epimerase	Q58M42	Prochlorococcus_phage	1.8e-28	34.0
WP_012761563.1\|898816_899131_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_012761564.1\|899241_900144_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	6.7e-54	41.2
WP_012761565.1\|900212_901337_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_009238643.1\|901468_902392_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	4.0e-46	37.0
WP_012761566.1\|902556_903606_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.1e-35	40.4

DBSCAN-SWA_3

1038756 : 1088168

uncultured_Mediterranean_phage(20.0%)

protease,transposase,integrase

attL 1048117:1048132|attR 1073101:1073116

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012761651.1\|1038756_1040268_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	5.6e-21	29.6
WP_009238527.1\|1040264_1040540_+	glutaredoxin family protein	NA	NA	NA	NA
WP_012761652.1\|1040756_1042556_+	elongation factor 4	A0A2K9L2P9	Tupanvirus	1.8e-21	42.2
WP_012761653.1\|1042586_1043480_+	signal peptidase I	NA	NA	NA	NA
WP_012761654.1\|1043542_1043911_+	DUF4845 domain-containing protein	NA	NA	NA	NA
WP_009238523.1\|1043912_1044683_+	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	8.1e-16	40.5
WP_004635627.1\|1044691_1045630_+	GTPase Era	NA	NA	NA	NA
WP_009238521.1\|1045663_1046485_+	DNA repair protein RecO	NA	NA	NA	NA
WP_009238520.1\|1046481_1047273_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_009238519.1\|1047269_1047713_+	holo-ACP synthase	NA	NA	NA	NA
WP_012761656.1\|1047709_1048759_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
1048117:1048132	attL	NA	NA	NA	NA
WP_012761657.1\|1048835_1049411_-	elongation factor P	NA	NA	NA	NA
WP_012761658.1\|1049527_1050721_-	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA
WP_012761659.1\|1050812_1052786_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_012761660.1\|1052853_1053429_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_009238513.1\|1055802_1056516_+	response regulator transcription factor	NA	NA	NA	NA
WP_012761661.1\|1056499_1058179_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_012761662.1\|1058171_1060505_+	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_012761663.1\|1060682_1060883_+	hypothetical protein	NA	NA	NA	NA
WP_012761664.1\|1060917_1061625_+	response regulator transcription factor	NA	NA	NA	NA
WP_012761665.1\|1061652_1061904_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_012761666.1\|1062210_1062966_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_012761667.1\|1063052_1064423_+	glucarate dehydratase	NA	NA	NA	NA
WP_012761668.1\|1064517_1065810_+	MFS transporter	NA	NA	NA	NA
WP_012761669.1\|1065820_1068232_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_009277361.1\|1068325_1069534_+	porin	NA	NA	NA	NA
WP_012761670.1\|1069533_1070469_+	aldose 1-epimerase	NA	NA	NA	NA
WP_012761671.1\|1070983_1072222_+\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	1.3e-10	27.7
WP_012761672.1\|1072825_1073128_+	hypothetical protein	NA	NA	NA	NA
1073101:1073116	attR	NA	NA	NA	NA
WP_012761673.1\|1073127_1073796_+	hypothetical protein	NA	NA	NA	NA
WP_103519510.1\|1073796_1074108_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012761675.1\|1074224_1075103_+	hypothetical protein	NA	NA	NA	NA
WP_012761676.1\|1075148_1075859_+	hypothetical protein	NA	NA	NA	NA
WP_086004663.1\|1077701_1077899_+\|transposase	transposase	NA	NA	NA	NA
WP_080517514.1\|1077939_1078365_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_146049759.1\|1078939_1079155_-	hypothetical protein	NA	NA	NA	NA
WP_086004664.1\|1080133_1081272_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080517515.1\|1081307_1081793_+	MFS transporter	NA	NA	NA	NA
WP_146049760.1\|1081793_1082159_+	MFS transporter	NA	NA	NA	NA
WP_012761681.1\|1082223_1082787_-	DUF924 family protein	E3T4R4	Cafeteria_roenbergensis_virus	2.2e-10	30.8
WP_012761682.1\|1082828_1083098_-	hypothetical protein	NA	NA	NA	NA
WP_012761683.1\|1083130_1084507_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_012761684.1\|1084572_1085346_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012761685.1\|1085458_1086370_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012761686.1\|1087130_1088168_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2272748 : 2283378

Ralstonia_phage(81.82%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012762511.1\|2272748_2273039_-	hypothetical protein	W6CPB2	Ralstonia_phage	1.2e-09	44.0
WP_012762512.1\|2273143_2273473_+	hypothetical protein	W6CMZ9	Ralstonia_phage	9.3e-46	89.0
WP_012762513.1\|2273673_2273841_+	hypothetical protein	NA	NA	NA	NA
WP_012762514.1\|2273840_2274161_+	hypothetical protein	NA	NA	NA	NA
WP_157039885.1\|2274165_2274312_+	hypothetical protein	NA	NA	NA	NA
WP_012762515.1\|2274321_2274828_+	hypothetical protein	W6CWV3	Ralstonia_phage	2.9e-38	77.4
WP_012762516.1\|2275098_2275350_+	hypothetical protein	W6CM39	Ralstonia_phage	6.4e-31	88.0
WP_012762517.1\|2275446_2276967_+	hypothetical protein	W6CLR8	Ralstonia_phage	3.1e-136	64.0
WP_012762518.1\|2276979_2277309_+	hypothetical protein	W6CWV7	Ralstonia_phage	6.9e-49	96.3
WP_012762519.1\|2277310_2278141_+	zonular occludens toxin	W6CPB9	Ralstonia_phage	2.1e-158	97.5
WP_012762521.1\|2278733_2279663_+	hypothetical protein	W6CM31	Ralstonia_phage	1.1e-168	95.8
WP_012762523.1\|2279862_2280453_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.5e-94	90.3
WP_012762524.1\|2280674_2281991_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-95	51.6
WP_041668241.1\|2282070_2283378_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.0e-75	38.4

DBSCAN-SWA_5

2382045 : 2417232

Burkholderia_phage(30.3%)

terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012762613.1\|2382045_2382591_-	glycoside hydrolase family 19 protein	A0A059VA40	Pseudomonas_phage	4.2e-59	66.1
WP_080517544.1\|2382583_2382886_-	hypothetical protein	A0A0P0IYC0	Acinetobacter_phage	3.0e-19	49.5
WP_080517524.1\|2383020_2384229_+	acyltransferase	NA	NA	NA	NA
WP_012762616.1\|2384350_2384632_+	hypothetical protein	NA	NA	NA	NA
WP_080517545.1\|2384547_2385276_+	hypothetical protein	NA	NA	NA	NA
WP_012762618.1\|2385516_2386917_-	hypothetical protein	A9YX14	Burkholderia_phage	1.2e-17	65.1
WP_012762619.1\|2386977_2387637_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.0e-67	55.0
WP_012762620.1\|2387638_2388829_-	hypothetical protein	A9YX12	Burkholderia_phage	9.9e-114	58.8
WP_012762621.1\|2388825_2389179_-	hypothetical protein	A9YX11	Burkholderia_phage	8.7e-34	65.0
WP_041668263.1\|2389187_2389904_-	phage protein	A9YX06	Burkholderia_phage	1.3e-65	52.4
WP_012762623.1\|2389896_2390820_-	hypothetical protein	A9YX04	Burkholderia_phage	4.0e-62	47.7
WP_012762624.1\|2390816_2391128_-	hypothetical protein	NA	NA	NA	NA
WP_012762625.1\|2391127_2391742_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.8e-26	40.9
WP_012762626.1\|2391738_2393637_-	bacteriophage protein	A0A2H4J9N7	uncultured_Caudovirales_phage	6.9e-85	33.7
WP_012762628.1\|2393817_2394264_-	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	1.8e-12	31.4
WP_012762629.1\|2394276_2394717_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.0e-39	53.4
WP_012762630.1\|2394725_2396543_-	DUF3383 family protein	A0A0P0I492	Acinetobacter_phage	4.2e-87	36.8
WP_012762631.1\|2396602_2397184_-	hypothetical protein	A9YX29	Burkholderia_phage	1.5e-62	63.7
WP_012762632.1\|2397187_2397559_-	hypothetical protein	A9YX28	Burkholderia_phage	1.2e-28	55.3
WP_012762633.1\|2397558_2398092_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.1e-35	49.7
WP_012762634.1\|2398088_2398475_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	1.7e-43	67.2
WP_012762635.1\|2398471_2398660_-	hypothetical protein	NA	NA	NA	NA
WP_041668265.1\|2398662_2399697_-	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	5.0e-122	67.7
WP_012762637.1\|2399759_2400245_-	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	2.3e-32	48.4
WP_012762638.1\|2400258_2401563_-	DUF2213 domain-containing protein	A0A0P0IRE1	Acinetobacter_phage	4.6e-64	47.6
WP_157039894.1\|2401565_2402207_-\|head	phage head morphogenesis protein	A9YWZ8	Burkholderia_phage	7.8e-73	65.1
WP_012762640.1\|2402148_2403720_-	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	2.9e-153	61.7
WP_012762641.1\|2403716_2405255_-\|terminase	phage terminase large subunit	W8VT11	Pseudomonas_phage	1.8e-107	44.7
WP_012762642.1\|2405211_2405868_-	hypothetical protein	G8C7P2	Escherichia_phage	2.5e-42	52.8
WP_012762644.1\|2406626_2406827_-	hypothetical protein	NA	NA	NA	NA
WP_012762645.1\|2406829_2407180_-	DUF2591 domain-containing protein	F8TVJ2	EBPR_siphovirus	2.8e-08	36.0
WP_012762646.1\|2407176_2407602_-	hypothetical protein	NA	NA	NA	NA
WP_012762647.1\|2407613_2407889_-	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	7.6e-17	45.6
WP_012762648.1\|2407885_2408407_-	DUF1367 family protein	NA	NA	NA	NA
WP_012762649.1\|2408403_2408814_-	hypothetical protein	NA	NA	NA	NA
WP_012762650.1\|2408923_2409373_-	HNH endonuclease	T1SAR3	Salmonella_phage	3.1e-28	46.0
WP_012762651.1\|2409372_2409585_-	hypothetical protein	NA	NA	NA	NA
WP_080517525.1\|2409581_2410415_-	hypothetical protein	A0A2H4ZCS2	Klebsiella_phage	1.6e-22	41.7
WP_012762653.1\|2410411_2411779_-	replicative DNA helicase	O80281	Escherichia_phage	1.1e-89	43.2
WP_012762654.1\|2411775_2412609_-	hypothetical protein	K7ZLF3	Xanthomonas_citri_phage	3.6e-38	56.8
WP_012762655.1\|2412766_2413063_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012762656.1\|2413076_2413469_-	hypothetical protein	C8CLH2	Xylella_phage	8.0e-20	43.3
WP_041668529.1\|2413567_2413798_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012762658.1\|2413881_2414760_+	helix-turn-helix domain-containing protein	A0A0D4DBI5	Acinetobacter_phage	7.8e-23	38.9
WP_012762659.1\|2415359_2415671_+	hypothetical protein	NA	NA	NA	NA
WP_012762660.1\|2415674_2415836_+	hypothetical protein	NA	NA	NA	NA
WP_012762661.1\|2415848_2416205_+	hypothetical protein	NA	NA	NA	NA
WP_012762663.1\|2416398_2417232_+	pentapeptide repeat-containing protein	U6C6I2	Ralstonia_phage	9.3e-42	82.8

DBSCAN-SWA_6

2463737 : 2472881

Methanothermobacter_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012762702.1\|2463737_2464943_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	2.5e-40	32.8
WP_012762703.1\|2464939_2465986_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_009241320.1\|2465982_2466429_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	3.0e-47	62.3
WP_012762704.1\|2466497_2468786_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.2e-168	42.3
WP_004631954.1\|2468782_2469109_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.3e-12	36.5
WP_004631953.1\|2469686_2469890_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.6e-22	78.8
WP_080517526.1\|2469915_2470860_+	DUF2501 domain-containing protein	NA	NA	NA	NA
WP_004631917.1\|2471630_2472881_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.0e-11	63.0

DBSCAN-SWA_7

2572242 : 2582510

unidentified_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012762793.1\|2572242_2573805_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	34.5
WP_009241422.1\|2573801_2574317_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_012762794.1\|2574345_2574990_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	1.7e-06	28.1
WP_012762795.1\|2575046_2575865_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	4.5e-33	31.3
WP_012762796.1\|2575876_2576584_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_012762797.1\|2576580_2577279_+	energy-coupling factor ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-07	30.5
WP_012762798.1\|2577222_2579121_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	4.4e-55	37.4
WP_009241427.1\|2579270_2580419_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.9e-22	28.5
WP_012762799.1\|2580554_2582510_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.9e-148	50.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_012855

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_012855_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012855_1

374229-374323

Orphan

Consensus_repeat	Method
CCACAGTTTCAACGTTGAAACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012855_1

>merge|NC_012855|1|374229-374323|CRISPRCasFinder
CCACAGTTTCAACGTTGAAACTGTGGGGCGTAAGCATCAGCGCGGTGGGTGTTTGTGACTGCAACGCTGCGCCAGCAGTTTCAACGTTGAAACTG

>NC_012855|1|1|374229-374323|CRISPRCasFinder
CCACAGTTTCAACGTTGAAACTG	TGGGGCGTAAGCATCAGCGCGGTGGGTGTTTGTGACTGCAACGCTGCGC
CAGCAGTTTCAACGTTGAAACTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_012855.1\|WP_004630189.1\|383406_384027_+\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
NC_012855.1\|WP_004630167.1\|372432_373470_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|272946
NC_012855.1\|WP_004630177.1\|378977_379883_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378917
NC_012855.1\|WP_004630157.1\|365754_367956_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|234698
NC_012855.1\|WP_004630160.1\|371231_371522_+\|hypothetical-protein	unknown	unknown	unknown
NC_012855.1\|WP_004630176.1\|378396_378981_+\|YcbK-family-protein	unknown	unknown	gnl\|CDD\|225650
NC_012855.1\|WP_004630171.1\|375571_376921_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NC_012855.1\|WP_004630173.1\|378055_378256_+\|hypothetical-protein	unknown	unknown	unknown
NC_012855.1\|WP_004630192.1\|385429_386218_-\|hypothetical-protein	unknown	unknown	unknown
NC_012855.1\|WP_004630155.1\|363871_364591_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373953
NC_012855.1\|WP_004630180.1\|379983_380409_+\|hypothetical-protein	unknown	unknown	unknown
NC_012855.1\|WP_004630152.1\|363281_363869_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373989
NC_012855.1\|WP_004630190.1\|384095_385343_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237523
NC_012855.1\|WP_004630170.1\|373462_374146_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_012855.1\|WP_080517555.1\|365023_365242_-\|hypothetical-protein	unknown	unknown	unknown
NC_012855.1\|WP_004630181.1\|380410_381172_+\|hypothetical-protein	unknown	unknown	unknown
NC_012855.1\|WP_004630184.1\|381238_382510_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_012855.1\|WP_004630164.1\|371726_371948_+\|hypothetical-protein	unknown	unknown	unknown
NC_012855.1\|WP_004630158.1\|369699_370704_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NC_012855.1\|WP_004630165.1\|372018_372273_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_012855.1\|WP_004630189.1\|383406_384027_+\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	2.52021e-07
NC_012855.1\|WP_004630167.1\|372432_373470_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	1.48884e-16
NC_012855.1\|WP_004630177.1\|378977_379883_-\|hypothetical-protein	gnl\|CDD\|378917	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 265 and 420 amino acids in length. It appears that these proteins are distantly related to the PDDEXK superfamily and so these domains are likely to be nucleases. This family has a C-terminal cysteine cluster similar to that found in pfam01930.	2.11701e-67
NC_012855.1\|WP_004630157.1\|365754_367956_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	9.45859e-25
NC_012855.1\|WP_004630176.1\|378396_378981_+\|YcbK-family-protein	gnl\|CDD\|225650	COG3108, COG3108, Uncharacterized protein conserved in bacteria [Function unknown].	2.19773e-41
NC_012855.1\|WP_004630171.1\|375571_376921_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	2.42838e-28
NC_012855.1\|WP_004630155.1\|363871_364591_+\|hypothetical-protein	gnl\|CDD\|373953	pfam15579, Imm52, Immunity protein 52. A predicted immunity protein with an alpha+beta fold and conserved tryptophan and phenylalanine residues, and a GT motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Tox-REase-5 family.	5.75438e-30
NC_012855.1\|WP_004630152.1\|363281_363869_+\|hypothetical-protein	gnl\|CDD\|373989	pfam15648, Tox-REase-5, Restriction endonuclease fold toxin 5. A predicted toxin of the restriction endonuclease fold present in bacterial polymorphic toxin systems. In bacterial polymorphic toxin systems, the toxin is exported by the type 2, type 5, type 6, or PrsW-peptidase dependent secretion system. Versions of this domain are also found in caudoviruses.	2.66087e-30
NC_012855.1\|WP_004630190.1\|384095_385343_+\|hypothetical-protein	gnl\|CDD\|237523	PRK13825, PRK13825, conjugal transfer protein TraB; Provisional.	4.68805e-131
NC_012855.1\|WP_004630170.1\|373462_374146_-\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.96798e-31
NC_012855.1\|WP_004630184.1\|381238_382510_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000691691
NC_012855.1\|WP_004630158.1\|369699_370704_+\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	6.85347e-42

>NC_012855.1|WP_004630170.1|373462_374146_-|ParA-family-protein
MGKIFAIANQKGGSGKTTITLNLAGAYAHDDPDLKILVIDADSQNTSVRASGAGEDPYPFTVANLAAAGKGLGREIRRMAEAFDLVLVDCPPSVDNLNTEIVVSVSDFVLVPMDASIVDAWSTQGMLQLVRRTVGSDPTRCAIVFNRVNTKTIAYAEISEAMSEDNPYPILKTTIALREVYKTAIGTGSTVFTVKGQRATKPAREEMMGVAMEMLEIMGLVEKTANE
>NC_012855.1|WP_004630167.1|372432_373470_-|ParB/RepB/Spo0J-family-partition-protein
MSDKSSNPNRSRLGSALRKGLATERGEVDARLNANSKVSEEGTSSSASANEALHYGGRGNTSSVKLRQQIRLADCVSNPFNPREFYNPEAIDALAVKLKRDGQYEAIKVTKNHRFPGKYVIIDGEYRSRAKKSLGDEFIDGEIFPELSDADLYLVANRINKDRTAQTVFDDAIAWTRLLENKVFPDQDALAATLDLSKAQVSKTLSLTELPSHLLRSMAENEEGVGLATAYNIKLIYKRKGEELAEQILERVLAGELTVKQLQEMNRRAEGGEPLRRTKAHYRTRVQFAGEEGIELGELKGFQDGRTELKLKNLTEQQQHLLAPRLEALVREVLAQNAAQASGSV
>NC_012855.1|WP_004630165.1|372018_372273_-|hypothetical-protein
MLRLGEALRLTAEETERFQTISGRRETPKSVEQYNKTLLKTAEHYQLLAAQEGSADAELLARLAEGELIKTEPEFKSKSDPCEQ
>NC_012855.1|WP_004630164.1|371726_371948_+|hypothetical-protein
MLNIESRSSAVAILAVIVQLFAAIYFLTIPVSSSVLRHQLGVLAFSMIVIGLLWLFAKANESVPSARAYRPAY
>NC_012855.1|WP_004630160.1|371231_371522_+|hypothetical-protein
MSNVVLSERALRRQAISEAHSHLLEVAAKQPKTLLENFRMYPSLVGDLACLEEVVEILVEQGFGKQLELLCDAPGIGRYASTVISRVVLFATKASA
>NC_012855.1|WP_004630158.1|369699_370704_+|hypothetical-protein
MKDEDSKKPSQLVIVPRDSAAESKRARERRFTALYEEALAIEAEDAKKAGQIGFVAKWMVHATLPYVQPKNNPPAWGRNSGKVSLLIQPGHYMKRVETIVRGKPKITQEAVSIGYPYGAYPRLILAWIATEVAKTGDRELVLGNSLSEFMSNIGRDTVSGGSRGNLTLMRNQMQRLFAANIAVTSDPDAVAWQTDGFRIVDNANIEIWWNPHNPDQGSLWQSRLRLTERFHETLSKSPVPVDLRIVKALSRSAMAIDIYCWLTYRYAIMDKSTKIPWEALMLQFGSESSPHKFKENFLKNLRDVKEVYRDAKLDYDKSGILLLPSRPSVPKRIA
>NC_012855.1|WP_004630157.1|365754_367956_+|tyrosine-type-recombinase/integrase
MPTPDRHETAASRPGALPADQAIEDVVFREVAAPDASLAGQAPATAESAAPGCARPATERRRIGLHHIAFFRTYLEGLDLADAADRYLDFGRDTPRARRTQRWLLDELVAAARKHKDFATARLLKIRPAAIAPLEVGPAVPGAQPKRQAPSLDDFAAERDPDGFYTEAELLELFTAEFPAGGDSEDPAEAAVRRRQERNARLRAKQLAALAELERLLVEVPKPEHHVLGWFDVSIALKLADVGLNTLRDLVRAVNAAGYRWYRNVPRLGEKGAGRITAWLEANGKALGMPVAQTALARPPRWGQPVALERTPSTSVAPLEYFVLPPSLDGSLGTNRDLDSRNKTEARDDKAAIDWWLRKYAGNANTLARYRTEAERLLLWAVLQKGKALSSLSITDCNEYINTFLPAPAPASMWIMERVEARSHPLWRPFRKGLGYKSRDLALQALKSLCESLTRAHYLDFNPFSEVRLARQMRLTEDGTPAEPETVTSRIHTERSLTHDEWQFAVRFLNSLPPETPATERIRFILIFAYGTGLRRAELAGARTGHITRTYAGPELGTITVLQVIGKGGKERFVPLSPRLLQALSAYLVYRGLPADPQACPAGTPLIPALQDKRELQRVRAVPAGADAVVAVGSAEKAIKLPKLYNAVKRFFDNAAAAAHSEAPEFADAFSRATTHWLRHTFGSHAVAGGMALETARQFLGHASISTTGIYSVADIARQYREVDAFIEASFGA
>NC_012855.1|WP_080517555.1|365023_365242_-|hypothetical-protein
MKARTRWLACSTCTVLRDHVLDTSTLTPFGHARSTESWLCTTCGTAHPVAAANSDQADRERLERLGQLRLID
>NC_012855.1|WP_004630155.1|363871_364591_+|hypothetical-protein
MNITSTFRLDQQTLPTEDAQLRDLWRVGQLLIPLGYPLNAWHPPADTPENSLLNEAFNDAGPTSAAVSILRAEKQEKELPGWREASVWNGIEGAGGVLFKSALTVTPKPFRCSFELSSKRVDAFSRKELVLPLVLGVLDIWPAMTLEVHPYKYSTQQQVFPDRPGVGWMLYLPKVLTVQQVPEAGALIPVMDGKKQRGTVVVSVADEPFSSDNPEHVKIANQIEVRLVDQDLLPRYSEL
>NC_012855.1|WP_004630152.1|363281_363869_+|hypothetical-protein
MAAAAGPLIEAALMRLLVALGVTATGAATIDQLRKRKEAADDAKTAPIARAESQTKTTEKCKECPPDKGSLVSRNWNMSDASRAYQTRITGFAPYTEWNFGGLDFDGFKSAECLLQEAKALYDQFFDPEDGEPKIFFRLSGGDRKIVRQAQAQTAVVIASSPARLTWYFMQPLSYRYFTRRFAREGVSAVTLLQP
>NC_012855.1|WP_004630171.1|375571_376921_-|replication-initiation-protein
MGTEFDKGMSVQGSGSITQLPVPQQATLLPMVKRGSPVTMRKAREAIFVFPDRPLSVLQQRLFNSCVYFAQRQPEFHSWKVLISELEHVIGYKDSSNRRYVMGELLSLMKEHVVWDATTNPLDRKISASTLLADVTHLVDQKAFEFSFSPKLREALLDPKIWQRINLLISQRFRSMGSGPLYEWCKRYERTGITSRWSWEDFRHAVVGIIDSDSIYAEFKHFRAKVLNRAIAEVNELTDIEVTLILHKVGRVVSQIQFKVDRKGGDLALEADSLNLPQVSSTTALLEEVLKLGVSPNKAAQVMSEFTEEQVKAALHHTLLRDASKDKEPLKSRASFFVSSIENGYSRPGDSTKRNAGPAPRRPILNDADLRESFMCSRDAKAEEAFLGMALDEQSEVLLQYNSSVRNDKLLYDPARSTKLAKTAFIRFLNQHLWGEPEDAELYAFHFKS
>NC_012855.1|WP_004630173.1|378055_378256_+|hypothetical-protein
MKTLFNWTVGLFVLFCFIVGFLDLDSSSKRKHASSDGQLADEAERRNHAAEDAAYYAEHNPHDHHA
>NC_012855.1|WP_004630176.1|378396_378981_+|YcbK-family-protein
MEDFRHPVPLPIASLPRRRFIQSATLAAAAAYAPAIFAQARDDYWSRPRALWLRRKETGEEVRTVYWADGKLVVDAYVQCCTLLRDVRAGAVVQMNPTLLDILCGVYGWFAQAGIERPIVVTSGYRTPATNSRAEGAARNSMHLVGRAADIRVPDVPTEYLARLGMYLRGGGVGYYATKQFVHVDSGRLRTWAG
>NC_012855.1|WP_004630177.1|378977_379883_-|hypothetical-protein
MNAFPNVMQGAVQPAWRGKKKAVFGLDRESYSVPVSDDEYHSDREYVSSTQLKSILKTPKHFLAAVQGAGKDKQVLEFGRLAHMAVFEPWRFEDMVLPYDGEFDRRLRNCKTFIADHPNHIVIGQDKFDALLSMREAVRAHHFRGRTLGEWFDEGEQEKAIYFVERVTNVKCRIKVDNLHPEFIFDLKSTVDVRPAAFNGSVHAYHYDLSAFMYQTGVQYFTGEERPFVFIAVEKEAPYSVMTYTAGDSLLDNGAQKFEDGLNRLNHARAHDSWPGYAGDYVLEVDRWHEYQSNHDILASA
>NC_012855.1|WP_004630180.1|379983_380409_+|hypothetical-protein
MRFGIVGLMKRLNTLSRPKSPALQTFVRQTFLELAEASFVTQTDFCSEVRAVYNNLGNPPLLRSKALAVLLAATEKFPTLITLKDERGSVVTAGANGFREICVMFPSVPKSDIEAICRKVGLLRGVPNMLAHSKPMNVLGF
>NC_012855.1|WP_004630181.1|380410_381172_+|hypothetical-protein
MTSTALETYSGALFGVPILLPRPRKCRAESAKGQYRFMEELTQLVRAATPYKVRTLDRFISLQGTTVISPASMRSFEQEMVAMTMKGKTAKIDKYVHAVGPGDDWPLVVMAIGVVARTTNGVPRFSLPAPDVWQSMLVKLQGYLGFHVEEFQGAVIGQIQWIDKAIDDARRMLMGACTRRIEGSVADGTAIDGVTVLTMEEGFRVHLHNSSGVSVIDVPARNGADIGAEIAGIDENIRFLTGKTAVWGLETRH
>NC_012855.1|WP_004630184.1|381238_382510_+|hypothetical-protein
MITGLEFDTPILGTVRMGETRPGLGGEEDYLVHFDYFEVHNRERNVDGTWAKHPIHDKLHNKLKLDGHAGTSNDELKLREIPITLPYNNPKLLLTQQLEARSLVDGRRVCVGNGESAVRLASDQRTVEMDCPGCERCPFGNSQEVQCQRRTSLIFRIEGQDDPFSVFVLHSAGKNTAQTLVTKVQAMHAAFGNRLTGIPMMLKMRNTVSADSDNSSVYYADLVLRDISPNEAVKVGMEYERLQKDAGFDQSAMEEALLQLKAKSQFAAPEDFGQVQDFYGRRGAASRGERVSQCLQLVAVNGDGPSLGGATAGEQGIAVLEAASPLPPPKGGARYRMRKAVQAATSNSSPSERASPQSEMPAKSTETDLQSSKLHPVAPADADVPKPVLKVPSVRAETNERVTTAALAGIPEMPLASAGGPGF
>NC_012855.1|WP_004630189.1|383406_384027_+|polymer-forming-cytoskeletal-protein
MNNTPMNDQKPETVSCVLSIDPAKEKITAVLPAGATIEGSLRLKEGGRIGGVVKGNVVSESGTLLIDSSAIVEGDVVARGRCIVLGQVGTSSHRTTIRCEKVDGLTISHAAQIHANIEHNGISATNVSGQIQRIADMAQPHALPPAAEWRAPGQDLHLEDLPSTQPPALTHDPSPVANFTQPPAQAQQTPALRVVISDTPQVAAVG
>NC_012855.1|WP_004630190.1|384095_385343_+|hypothetical-protein
MTDKTWGSFIQWRAIALPFGQSKVAECLFALVVGAAICSISWREHAAPLLAALLPVVMVMCRSRVQAWFLALGYGLDIGLMGFGGAGTFFGGSWLLGLAAGCTYGLVFSATVAALYPNDTQSPKKKAVAILAWTVLWTYPPLGAFLAGSLVATWGFWFPGTKWLGLALGAGITTLLGAYAHTLYGRVAVGVALVAALVLSPLQEASHERSGDWVGVSTNWGVQTPETLPETLVKMRELIRDQAARGAKVVVFPESIIGTYDPSEDGVLEIMLKQAAEQNKVSVVFGANAMTDEGMANIAREYEYTPDGVHELQFQARQTVPIAEWNPLSRYHYPAHWFSSGVMPIGGRGALFLFCYEEFLPWEVLYSIGREKPDLIVAMSNLWWTKGTGEPVLQHRYTEGYAKLFGLPLVVATNR
>NC_012855.1|WP_004630192.1|385429_386218_-|hypothetical-protein
MISFSLLELFGVDTSSSFLVPFERPGLALQALACSLLYVSFWLFVRYRKRIAIRFRWPTFLACLAVGLVPYLANEVAVADAYRQLGQLQILTQSITVNRAHDVICSFDQAKLTPDNLDHARQTLAEKSLRWRKVHTADVISADQWAVQTDQCSFMPLPDTHHVSESIYAAGRAASWLQVGVYIAAAYGLWVLLTFSAASLAVGGTENKSAGEVDSNGINASKAESIAMAIVGTLLGLIYALPFVWLLIYPKPSGRRSSLRRP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_012855_1	1.1\|374252\|49\|NC_012855\|CRISPRCasFinder	374252-374300	49	NC_012855	Ralstonia pickettii 12D plasmid pRp12D01, complete sequence	374252-374300	0	1.0

1. spacer 1.1|374252|49|NC_012855|CRISPRCasFinder matches to NC_012855 (Ralstonia pickettii 12D plasmid pRp12D01, complete sequence) position: , mismatch: 0, identity: 1.0

tggggcgtaagcatcagcgcggtgggtgtttgtgactgcaacgctgcgc	CRISPR spacer
tggggcgtaagcatcagcgcggtgggtgtttgtgactgcaacgctgcgc	Protospacer
*************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012851

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_012849

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_012856

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_012855

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection