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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012917 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome 5 crisprs DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK,csa3 1 10 7 0

Results visualization

1. NC_012917
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012917_1 1330049-1330143 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012917_2 1781551-1781647 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012917_3 2658299-2658405 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012917_4 3673351-3673507 TypeIII NA
2 spacers
cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012917_5 3681990-3682376 TypeIII NA
5 spacers
PD-DExK,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_012917_3 3.1|2658336|33|NC_012917|CRISPRCasFinder 2658336-2658368 33 NC_012917.1 2658265-2658297 1 0.97

1. spacer 3.1|2658336|33|NC_012917|CRISPRCasFinder matches to position: 2658265-2658297, mismatch: 1, identity: 0.97

tataacgtcgcttgcgacggcccgaagggaggt	CRISPR spacer
tacaacgtcgcttgcgacggcccgaagggaggt	Protospacer
**.******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012917_5 5.2|3682097|32|NC_012917|PILER-CR,CRT 3682097-3682128 32 LT960552 Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite 113305-113336 1 0.969
NC_012917_5 5.2|3682097|32|NC_012917|PILER-CR,CRT 3682097-3682128 32 LR596615 Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I 112969-113000 1 0.969
NC_012917_5 5.2|3682097|32|NC_012917|PILER-CR,CRT 3682097-3682128 32 NC_042116 Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite 112969-113000 1 0.969
NC_012917_5 5.2|3682097|32|NC_012917|PILER-CR,CRT 3682097-3682128 32 NC_041878 Pectobacterium phage CBB, complete genome 113973-114004 1 0.969
NC_012917_5 5.2|3682097|32|NC_012917|PILER-CR,CRT 3682097-3682128 32 NC_019401 Cronobacter phage vB_CsaM_GAP32, complete genome 117692-117723 1 0.969
NC_012917_5 5.4|3682236|33|NC_012917|PILER-CR,CRT 3682236-3682268 33 NZ_CP034939 Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence 93129-93161 1 0.97
NC_012917_5 5.4|3682236|33|NC_012917|PILER-CR,CRT 3682236-3682268 33 NZ_CP027261 Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete sequence 59326-59358 1 0.97
NC_012917_5 5.6|3682098|31|NC_012917|CRISPRCasFinder 3682098-3682128 31 LT960552 Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite 113305-113335 1 0.968
NC_012917_5 5.6|3682098|31|NC_012917|CRISPRCasFinder 3682098-3682128 31 LR596615 Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I 112969-112999 1 0.968
NC_012917_5 5.6|3682098|31|NC_012917|CRISPRCasFinder 3682098-3682128 31 NC_042116 Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite 112969-112999 1 0.968
NC_012917_5 5.6|3682098|31|NC_012917|CRISPRCasFinder 3682098-3682128 31 NC_041878 Pectobacterium phage CBB, complete genome 113973-114003 1 0.968
NC_012917_5 5.6|3682098|31|NC_012917|CRISPRCasFinder 3682098-3682128 31 NC_019401 Cronobacter phage vB_CsaM_GAP32, complete genome 117692-117722 1 0.968
NC_012917_5 5.8|3682237|32|NC_012917|CRISPRCasFinder 3682237-3682268 32 NZ_CP034939 Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence 93130-93161 1 0.969
NC_012917_5 5.8|3682237|32|NC_012917|CRISPRCasFinder 3682237-3682268 32 NZ_CP027261 Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete sequence 59327-59358 1 0.969
NC_012917_4 4.2|3673444|40|NC_012917|CRISPRCasFinder 3673444-3673483 40 MH389777 Dickeya phage vB_DsoM_JA11, complete genome 181094-181133 7 0.825
NC_012917_4 4.2|3673444|40|NC_012917|CRISPRCasFinder 3673444-3673483 40 MH460462 Dickeya phage vB_DsoM_JA33, complete genome 181211-181250 7 0.825
NC_012917_4 4.2|3673444|40|NC_012917|CRISPRCasFinder 3673444-3673483 40 MH460460 Dickeya phage vB_DsoM_JA13, complete genome 179967-180006 7 0.825
NC_012917_5 5.9|3682307|32|NC_012917|CRISPRCasFinder 3682307-3682338 32 NC_019533 Wheat blue dwarf phytoplasma plasmid pWBD2, complete sequence 1116-1147 7 0.781
NC_012917_5 5.9|3682307|32|NC_012917|CRISPRCasFinder 3682307-3682338 32 NC_019535 Wheat blue dwarf phytoplasma plasmid pWBD1, complete sequence 1116-1147 7 0.781
NC_012917_5 5.9|3682307|32|NC_012917|CRISPRCasFinder 3682307-3682338 32 NZ_CP021875 Enterococcus wangshanyuanii strain MN05 plasmid unnamed2 30021-30052 7 0.781
NC_012917_5 5.9|3682307|32|NC_012917|CRISPRCasFinder 3682307-3682338 32 NZ_CP021876 Enterococcus wangshanyuanii strain MN05 plasmid unnamed3 172465-172496 7 0.781
NC_012917_3 3.1|2658336|33|NC_012917|CRISPRCasFinder 2658336-2658368 33 KP162168 Paracoccus phage vB_PmaS-R3, complete genome 15537-15569 8 0.758
NC_012917_3 3.1|2658336|33|NC_012917|CRISPRCasFinder 2658336-2658368 33 NC_026608 Paracoccus phage vB_PmaS_IMEP1, complete genome 15537-15569 8 0.758
NC_012917_5 5.9|3682307|32|NC_012917|CRISPRCasFinder 3682307-3682338 32 KX467643 Sulfolobus islandicus filamentous virus 2, complete genome 37986-38017 8 0.75
NC_012917_5 5.7|3682167|32|NC_012917|CRISPRCasFinder 3682167-3682198 32 NZ_CP016617 Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence 790180-790211 9 0.719
NC_012917_5 5.10|3682306|33|NC_012917|CRT 3682306-3682338 33 KX467643 Sulfolobus islandicus filamentous virus 2, complete genome 37986-38018 9 0.727
NC_012917_5 5.3|3682166|33|NC_012917|PILER-CR,CRT 3682166-3682198 33 NZ_CP016617 Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence 790179-790211 10 0.697
NC_012917_5 5.9|3682307|32|NC_012917|CRISPRCasFinder 3682307-3682338 32 MN657140 Cryobacterium sp. strain ANT_H26B plasmid pA26BH1, complete sequence 19004-19035 10 0.688

1. spacer 5.2|3682097|32|NC_012917|PILER-CR,CRT matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 1, identity: 0.969

tttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
tttcaagagcatttcgttgcgatgtaattagt	Protospacer
*************** ****************

2. spacer 5.2|3682097|32|NC_012917|PILER-CR,CRT matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 1, identity: 0.969

tttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
tttcaagagcatttcgttgcgatgtaattagt	Protospacer
*************** ****************

3. spacer 5.2|3682097|32|NC_012917|PILER-CR,CRT matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 1, identity: 0.969

tttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
tttcaagagcatttcgttgcgatgtaattagt	Protospacer
*************** ****************

4. spacer 5.2|3682097|32|NC_012917|PILER-CR,CRT matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 1, identity: 0.969

tttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
tttcaagagcatttctttgtgatgtaattagt	Protospacer
*******************.************

5. spacer 5.2|3682097|32|NC_012917|PILER-CR,CRT matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 1, identity: 0.969

tttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
tttcaagagcatttctttgtgatgtaattagt	Protospacer
*******************.************

6. spacer 5.4|3682236|33|NC_012917|PILER-CR,CRT matches to NZ_CP034939 (Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence) position: , mismatch: 1, identity: 0.97

tgatacatcacgtatgaagccagatcgaaaatc	CRISPR spacer
tgatgcatcacgtatgaagccagatcgaaaatc	Protospacer
****.****************************

7. spacer 5.4|3682236|33|NC_012917|PILER-CR,CRT matches to NZ_CP027261 (Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete sequence) position: , mismatch: 1, identity: 0.97

tgatacatcacgtatgaagccagatcgaaaatc	CRISPR spacer
tgatgcatcacgtatgaagccagatcgaaaatc	Protospacer
****.****************************

8. spacer 5.6|3682098|31|NC_012917|CRISPRCasFinder matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 1, identity: 0.968

ttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
ttcaagagcatttcgttgcgatgtaattagt	Protospacer
************** ****************

9. spacer 5.6|3682098|31|NC_012917|CRISPRCasFinder matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 1, identity: 0.968

ttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
ttcaagagcatttcgttgcgatgtaattagt	Protospacer
************** ****************

10. spacer 5.6|3682098|31|NC_012917|CRISPRCasFinder matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 1, identity: 0.968

ttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
ttcaagagcatttcgttgcgatgtaattagt	Protospacer
************** ****************

11. spacer 5.6|3682098|31|NC_012917|CRISPRCasFinder matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 1, identity: 0.968

ttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
ttcaagagcatttctttgtgatgtaattagt	Protospacer
******************.************

12. spacer 5.6|3682098|31|NC_012917|CRISPRCasFinder matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 1, identity: 0.968

ttcaagagcatttctttgcgatgtaattagt	CRISPR spacer
ttcaagagcatttctttgtgatgtaattagt	Protospacer
******************.************

13. spacer 5.8|3682237|32|NC_012917|CRISPRCasFinder matches to NZ_CP034939 (Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence) position: , mismatch: 1, identity: 0.969

gatacatcacgtatgaagccagatcgaaaatc	CRISPR spacer
gatgcatcacgtatgaagccagatcgaaaatc	Protospacer
***.****************************

14. spacer 5.8|3682237|32|NC_012917|CRISPRCasFinder matches to NZ_CP027261 (Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete sequence) position: , mismatch: 1, identity: 0.969

gatacatcacgtatgaagccagatcgaaaatc	CRISPR spacer
gatgcatcacgtatgaagccagatcgaaaatc	Protospacer
***.****************************

15. spacer 4.2|3673444|40|NC_012917|CRISPRCasFinder matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 7, identity: 0.825

---taagggattaagactcttcatcttcctcatcttcttcctc	CRISPR spacer
tcagaagagatt---actcttcttcttcctcatcatcttcctc	Protospacer
    ***.****   ******* *********** ********

16. spacer 4.2|3673444|40|NC_012917|CRISPRCasFinder matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 7, identity: 0.825

---taagggattaagactcttcatcttcctcatcttcttcctc	CRISPR spacer
tcagaagagatt---actcttcttcttcctcatcatcttcctc	Protospacer
    ***.****   ******* *********** ********

17. spacer 4.2|3673444|40|NC_012917|CRISPRCasFinder matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 7, identity: 0.825

---taagggattaagactcttcatcttcctcatcttcttcctc	CRISPR spacer
tcagaagagatt---actcttcttcttcctcatcatcttcctc	Protospacer
    ***.****   ******* *********** ********

18. spacer 5.9|3682307|32|NC_012917|CRISPRCasFinder matches to NC_019533 (Wheat blue dwarf phytoplasma plasmid pWBD2, complete sequence) position: , mismatch: 7, identity: 0.781

taaactgaatagggatttcttttagcttttta	CRISPR spacer
aaaattgaatagggatgtcttttaaagattta	Protospacer
 ***.*********** *******.   ****

19. spacer 5.9|3682307|32|NC_012917|CRISPRCasFinder matches to NC_019535 (Wheat blue dwarf phytoplasma plasmid pWBD1, complete sequence) position: , mismatch: 7, identity: 0.781

taaactgaatagggatttcttttagcttttta	CRISPR spacer
aaaattgaatagggatgtcttttaaagattta	Protospacer
 ***.*********** *******.   ****

20. spacer 5.9|3682307|32|NC_012917|CRISPRCasFinder matches to NZ_CP021875 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed2) position: , mismatch: 7, identity: 0.781

taaactg-aatagggatttcttttagcttttta	CRISPR spacer
-gatcagtaataggattttcttttagcttttca	Protospacer
 .* * * ******. ***************.*

21. spacer 5.9|3682307|32|NC_012917|CRISPRCasFinder matches to NZ_CP021876 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

taaactg-aatagggatttcttttagcttttta	CRISPR spacer
-gatcagtaataggattttcttttagcttttca	Protospacer
 .* * * ******. ***************.*

22. spacer 3.1|2658336|33|NC_012917|CRISPRCasFinder matches to KP162168 (Paracoccus phage vB_PmaS-R3, complete genome) position: , mismatch: 8, identity: 0.758

tataacgtcgcttgcgacggcccgaagggaggt	CRISPR spacer
tttgacttcgcgtgcgacggcccgaagggctac	Protospacer
* *.** **** *****************  ..

23. spacer 3.1|2658336|33|NC_012917|CRISPRCasFinder matches to NC_026608 (Paracoccus phage vB_PmaS_IMEP1, complete genome) position: , mismatch: 8, identity: 0.758

tataacgtcgcttgcgacggcccgaagggaggt	CRISPR spacer
tttgacttcgcgtgcgacggcccgaagggctac	Protospacer
* *.** **** *****************  ..

24. spacer 5.9|3682307|32|NC_012917|CRISPRCasFinder matches to KX467643 (Sulfolobus islandicus filamentous virus 2, complete genome) position: , mismatch: 8, identity: 0.75

taaactgaatagggatttcttttagcttttta	CRISPR spacer
ttgtatgaatagggatttcttttttcttttcc	Protospacer
* .  ******************  *****. 

25. spacer 5.7|3682167|32|NC_012917|CRISPRCasFinder matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgttatccgcatacagatcgaactccatcatg	CRISPR spacer
tcgtatctgcatacagatcgaactcgatttgc	Protospacer
.  ****.***************** **.   

26. spacer 5.10|3682306|33|NC_012917|CRT matches to KX467643 (Sulfolobus islandicus filamentous virus 2, complete genome) position: , mismatch: 9, identity: 0.727

ttaaactgaatagggatttcttttagcttttta	CRISPR spacer
attgtatgaatagggatttcttttttcttttcc	Protospacer
 * .  ******************  *****. 

27. spacer 5.3|3682166|33|NC_012917|PILER-CR,CRT matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

acgttatccgcatacagatcgaactccatcatg	CRISPR spacer
gtcgtatctgcatacagatcgaactcgatttgc	Protospacer
..  ****.***************** **.   

28. spacer 5.9|3682307|32|NC_012917|CRISPRCasFinder matches to MN657140 (Cryobacterium sp. strain ANT_H26B plasmid pA26BH1, complete sequence) position: , mismatch: 10, identity: 0.688

taaactgaatagggatttcttttagcttttta	CRISPR spacer
ggaggggaatgcggatttcttttagctttgct	Protospacer
 .*.  ****. ***************** . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1529390 : 1538284 8 Synechococcus_phage(42.86%) NA NA
DBSCAN-SWA_2 1787872 : 1879434 93 Burkholderia_virus(21.43%) tRNA,plate,integrase,protease,tail attL 1804945:1804960|attR 1888320:1888335
DBSCAN-SWA_3 2180458 : 2190011 10 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_4 2989227 : 3022218 44 Salmonella_phage(75.0%) plate,holin,capsid,terminase,head,portal,integrase,tail attL 2989037:2989096|attR 3022684:3022747
DBSCAN-SWA_5 3545465 : 3550884 6 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_6 3573373 : 3631379 70 Escherichia_phage(24.39%) tRNA,lysis,plate,capsid,terminase,head,portal,integrase,bacteriocin,tail attL 3573089:3573113|attR 3601295:3601319
DBSCAN-SWA_7 4339464 : 4348313 7 Dickeya_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage