CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017354	Helicobacter pylori 52, complete genome	3 crisprs	cas2,DEDDh	1	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017354_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017354_1

134779-134876

Orphan

Consensus_repeat	Method
CTTTCTTGTTCTAACTCTATCTCACTCTTATTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017354_1

>merge|NC_017354|1|134779-134876|CRISPRCasFinder
CTTTCTTGTTCTAACTCTATCTCACTCTTATTTGCTTTTTGTTTTTCTTGTTCTGTTTTCTGTCTTTCTTGTTCTAACTCTATCCCACTCTTATTTGC

>NC_017354|1|1|134779-134876|CRISPRCasFinder
CTTTCTTGTTCTAACTCTATCTCACTCTTATTTGC	TTTTTGTTTTTCTTGTTCTGTTTTCTGT
CTTTCTTGTTCTAACTCTATCCCACTCTTATTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017354.1\|WP_001040763.1\|133023_133950_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223803
NC_017354.1\|WP_000009997.1\|129110_130655_-\|flagellin-B	unknown	unknown	gnl\|CDD\|237440
NC_017354.1\|WP_001264165.1\|140893_141244_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NC_017354.1\|WP_000821572.1\|143488_144358_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000233949.1\|125134_125965_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|235174
NC_017354.1\|WP_041169248.1\|142355_142481_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000154734.1\|126843_127140_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000653241.1\|124559_125135_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|184538
NC_017354.1\|WP_000089219.1\|140012_140624_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|129272
NC_017354.1\|WP_001271750.1\|138177_140016_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NC_017354.1\|WP_000681491.1\|130820_133031_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NC_017354.1\|WP_000750190.1\|141443_142304_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_017354.1\|WP_001269142.1\|135380_137819_-\|pyruvate,-water-dikinase	unknown	unknown	gnl\|CDD\|235809
NC_017354.1\|WP_000972747.1\|121492_122413_-\|cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|107204
NC_017354.1\|WP_000521029.1\|122666_124529_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_017354.1\|WP_000731697.1\|142659_143085_+\|DUF1104-domain-containing-protein	unknown	unknown	gnl\|CDD\|368949
NC_017354.1\|WP_014533387.1\|126184_126823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180279
NC_017354.1\|WP_000968761.1\|127164_129051_-\|motility-associated-factor-glycosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225324
NC_017354.1\|WP_001871589.1\|138005_138137_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_001125542.1\|140604_140799_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676

Protein	Function_ID	Function_description	E-value
NC_017354.1\|WP_001040763.1\|133023_133950_+\|radical-SAM-protein	gnl\|CDD\|223803	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion].	3.30421e-89
NC_017354.1\|WP_000009997.1\|129110_130655_-\|flagellin-B	gnl\|CDD\|237440	PRK13588, PRK13588, flagellin B; Provisional.	0
NC_017354.1\|WP_001264165.1\|140893_141244_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	1.26299e-60
NC_017354.1\|WP_000233949.1\|125134_125965_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|235174	PRK03911, PRK03911, HrcA family transcriptional regulator.	1.24868e-119
NC_017354.1\|WP_000653241.1\|124559_125135_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|184538	PRK14149, PRK14149, heat shock protein GrpE; Provisional.	1.02071e-99
NC_017354.1\|WP_000089219.1\|140012_140624_+\|translation-initiation-factor-IF-3	gnl\|CDD\|129272	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3. infC uses abnormal initiation codons such as AUA, AUC, and CUG which render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression [Protein synthesis, Translation factors].	1.96689e-75
NC_017354.1\|WP_001271750.1\|138177_140016_+\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_017354.1\|WP_000681491.1\|130820_133031_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NC_017354.1\|WP_000750190.1\|141443_142304_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.36442e-49
NC_017354.1\|WP_001269142.1\|135380_137819_-\|pyruvate,-water-dikinase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NC_017354.1\|WP_000972747.1\|121492_122413_-\|cysteine-synthase-family-protein	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	7.79266e-142
NC_017354.1\|WP_000521029.1\|122666_124529_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_017354.1\|WP_014533387.1\|126184_126823_+\|hypothetical-protein	gnl\|CDD\|180279	PRK05834, PRK05834, hypothetical protein; Provisional.	6.90036e-110
NC_017354.1\|WP_000968761.1\|127164_129051_-\|motility-associated-factor-glycosyltransferase-family-protein	gnl\|CDD\|225324	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017354.1\|WP_000731697.1\|142659_143085_+\|DUF1104-domain-containing-protein	gnl\|CDD\|368949	pfam06518, DUF1104, Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found largely in Helicobacter pylori.	2.67197e-25
NC_017354.1\|WP_001125542.1\|140604_140799_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.81419e-15

>NC_017354.1|WP_001040763.1|133023_133950_+|radical-SAM-protein
MAKENLPIVFGPVLSRRFGKSLGVDLSPSKKQCNYNCIYCELGKAKPIERMEEVIEVKTLISAIQNALNNLATPIDVLTITANGEPTLYPHLLELIQSIKPFLKGVKTLILSNGSLFYEPKVQQALKEFDIVKFSLDAIDLKAFERVDKPYSKDIDKILEGILSFSQIYQGQLVAEVLLIKGVNDSANNLKRIADFLKKINTARVDLSTIDRPSSFKAPKLSEDELLKCSLFFEGLCVSLPKRSIAQAKKLISCGIDELLALISRRPLSAEEAPLILDPNAFKHLETLLNHKQITIKKVGSLEFYCAF
>NC_017354.1|WP_000681491.1|130820_133031_+|type-I-DNA-topoisomerase
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHKELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILNALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDREREIKAFKPLTYFTLDAYFEPHLEAQLISYRGNKLKAQELIDERKAQEIKNELEKESYTISSIIKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIVLEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGNDDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVMEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYVKQTENANDGAKQESCEKCGGEMVQKFSKNGAFLACNNYPECKNTKSLKNTPNANEIIEGVKCPECGGDIALKRSKKGSFYGCNNYPKCRFLSNHKPINKRCEKCRYLMSERIYRKKKAHECIQCKERVFLEEDDG
>NC_017354.1|WP_000009997.1|129110_130655_-|flagellin-B
MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRKALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSAEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVRASYNVMATGGTPVQSGTVKDLTINGVEIGTVNDVHKNDADGRLVNAINSVKDRTGVEASLDIQGRINLHSIDGRAISVHATSASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ
>NC_017354.1|WP_000968761.1|127164_129051_-|motility-associated-factor-glycosyltransferase-family-protein
MMDIYQKNLQALFKKDPLLFAKLKAIKENKKYEVFLGNDSANFNLLDKETNTPLFEKSPLDSSLELYKNSEIYMLYPYLYYFGLGNGVFYRLLLGNENLKRLVVIEPEIEVIFIVLNLLDFSTEILENRLILLHANFCNYNMIASLFDMDKKSRLYARMYDLKLFNAYYERYSHQMIEINQHFTRALEHGAISVGNDAKDALIGIKQHAANLPEVIKSPSLVDFVNALKNRDTAIIVSTGPSLNKQLPLLKEIAPYATLFCIDASFPILAKAGIKPDIVLSLERVDLTAKFYEETPLDFQEGVIFALTSIVHKRLIQAIKKGVKQFSFRPFGYTNLFGLHQYGYVGIGMSAANMAYELVVHSRFKRCVFIGQDLSFSQSGNSHASGAIYGDREIKPKKDKDKIFTEKYGGNGEVETTLVWKLFLEFFEKDIFNTPYKLEVINATEGGARIKGTKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIAKQKCEEIIKYTNEKKTQVEEVFLKVAPFLEEVEKLHEEKKLEELDFKKLENLSAEIDNIKELFDDKRFNSYFMDAIQSYIFHQELHIAEIVCKKTNNEDELRAKQLEYIYAHKYWLFSLAGGMDCVIEAIKMALKEW
>NC_017354.1|WP_000154734.1|126843_127140_+|hypothetical-protein
MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQNSVQDGFSQDNAQNAPDFDRLQALNTINNDGEIKDKSQVEKNLASGENTPEIYSSLDTYA
>NC_017354.1|WP_014533387.1|126184_126823_+|hypothetical-protein
MLNMNTHTRGIDSNLIHSLQSISLSMFRKGFFGLYQGSISARIGTNQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV
>NC_017354.1|WP_000233949.1|125134_125965_-|HrcA-family-transcriptional-regulator
MVIDEIFQIMMLKRIKVGSDLNKKESLLDAFVKTYLQILEPISSKRLKELANLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKSLRFEVLKVNEKRLKSASENFGLFTLLKKPSLERLERVIECEKRFLILDFLAFSCVLSYSVKMEKFLLELVGRSVKEVRSIAASVNALSLARQLERLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLKKPLDFIEPDCMLVTRPIEFQNKRIQLLCVGKLECDYEGFFQTISKEE
>NC_017354.1|WP_000653241.1|124559_125135_-|nucleotide-exchange-factor-GrpE
MKDKHNQEHDHLSQEELESCKKACACKEQQGEEMQEASEKECEIKEDFELKYQEMHEKYLRAHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAAEENKESALTKGLELTMEKLHEVLARHGIEGIECLEEFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAKND
>NC_017354.1|WP_000521029.1|122666_124529_-|molecular-chaperone-DnaK
MGKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYGLDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTRAKFESLTEDLVEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFINKDLNKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAHQTQKSLDEHKTNLNENDANEIQNAINALKECVKNDNATKAELEDKTKALAQAAQKLGEAMANKNNAEQPKKKDDDVIDAEVE
>NC_017354.1|WP_000972747.1|121492_122413_-|cysteine-synthase-family-protein
MMIITTMQDAIGRTPVFKFTSKDYPIPIKSAIYAKLEHLNPGGSIKDRLGQYLIEEGFKTGKITSKTTIIEPTAGNTGIALALVALKHHLKTIFVVPEKFSTEKQQIMRALGAKVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFVGTARYLKEHIPAIRLIGVEPEGSILNGGEPGPHEIEGIGVEFIPPFFANLDIDGFETISDEEGFSYTRELAKKNGLLVGSSSGAAFVAALKEAQRLPEGSQVLTIFPDVADRYLSKGIYL
>NC_017354.1|WP_001269142.1|135380_137819_-|pyruvate,-water-dikinase
MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYNMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCLASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGIYEHEIERVELSNMQETQTKIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKRSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDHGLTAH
>NC_017354.1|WP_001871589.1|138005_138137_+|hypothetical-protein
MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC
>NC_017354.1|WP_001271750.1|138177_140016_+|threonine--tRNA-ligase
MSAELIAVYKDEQIIDLESAKALGLSDGVKALNGTEPIYFDDSPLALEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTASKISEEDLPKIEAKMKEFAKLKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEFEDLCKGPHLPNTRFLNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKRDHRKLGVELGLFSFDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDKVWEKATSALKEALKEHRIGYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDMNLPERFKLAFTNERNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHAFALKLKEVLKKCDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQAQYKMPLKEFLNMVESKMQEVSF
>NC_017354.1|WP_000089219.1|140012_140624_+|translation-initiation-factor-IF-3
MSRNEVLLNGDINFKEVRCVGDNGEVYGIISSKEALNIAQNLGLDLVLISASAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPKNEKKTKENNPPFNRINLMKGENHAKNED
>NC_017354.1|WP_001125542.1|140604_140799_+|50S-ribosomal-protein-L35
MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSLLCRA
>NC_017354.1|WP_001264165.1|140893_141244_+|50S-ribosomal-protein-L20
MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYYAFRDRKQKKREFRSLWVVRINAACRMHNTSYSHFMHALKVAGVELDRKVLADMAMNDMQAFESVLESVKEHL
>NC_017354.1|WP_000750190.1|141443_142304_+|outer-membrane-protein
MKKSVIVGAISLAMTSLLSAETPKQEKAIKTSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKSPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLHFGFFVGVAIGGTSWGPTNYYFKDLADEYRGSFHPSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRNNYYTASADNVPEGTTYRFTFHRPYAFYWRYIVSF
>NC_017354.1|WP_041169248.1|142355_142481_+|hypothetical-protein
MVFYDFLVSKALKNQCDYLAKIKAQSLQTIELTNNSTQTSL
>NC_017354.1|WP_000731697.1|142659_143085_+|DUF1104-domain-containing-protein
MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRAEVNKRLKAMKEEERKNYKADFKKAMDKNLASLSQEDRNKRKKEILEAIANKKKTMTMKEYRQEGLDLHDCACEGPFHDHEGKKGKKPSHHQH
>NC_017354.1|WP_000821572.1|143488_144358_+|hypothetical-protein
MKRILFFLVATTFLLRAETDSATINTTVDPNVMFSESSTGNVKKDRKRVLKNMVNLEKERVKNFNQYSETKMSKGDLSAFGAFFKGSLESCVDQKICYYEHKNGKVSFVVNDREKFYKHVLKDLGTELSLPLFNWLYKGSDFGALHEQFGDMYDGYIKYLISMVRISQREKARKLDAVTLKKMEDQAEKDTKAAFQKRSSGELESHTDSPEFISSSKKVQNASNPDLDSTANANALKETASKEPETSSKKEKKPKKKRRLSKKERQQQALQQEFEKQISDSSKSENIAK

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Crispr_ID: NC_017354_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017354_2

351504-351613

Orphan

Consensus_repeat	Method
AGGCTCTCTAGCGTTACTGAAGAGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017354_2

>merge|NC_017354|2|351504-351613|CRISPRCasFinder
AGGCTCTCTAGCGTTACTGAAGAGATTATTGCCAAAAAGCAAGAAGAAACCCAACGCCAAGAAGCCCCAGAGGATACGCATGAGAGGCTCTCTAGCGTTACTGAAGAGAT

>NC_017354|2|2|351504-351613|CRISPRCasFinder
AGGCTCTCTAGCGTTACTGAAGAGAT	TATTGCCAAAAAGCAAGAAGAAACCCAACGCCAAGAAGCCCCAGAGGATACGCATGAG
AGGCTCTCTAGCGTTACTGAAGAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017354.1\|WP_000835227.1\|348825_349626_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|273238
NC_017354.1\|WP_000829839.1\|359344_360013_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239486
NC_017354.1\|WP_001117113.1\|355014_355911_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_017354.1\|WP_000373230.1\|357469_359086_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_017354.1\|WP_000458573.1\|353024_353810_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_042350016.1\|352360_352429_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_079990918.1\|343436_344330_+\|CMP-N-acetylneuraminic-acid-synthetase	unknown	unknown	gnl\|CDD\|226488
NC_017354.1\|WP_001013455.1\|354181_355021_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_014533409.1\|351720_352095_+\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|381597
NC_017354.1\|WP_001168283.1\|345736_346519_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|184435
NC_017354.1\|WP_000051408.1\|348580_348814_+\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|188120
NC_017354.1\|WP_000833932.1\|344801_345740_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|224577
NC_017354.1\|WP_000599247.1\|349622_350027_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_017354.1\|WP_000364707.1\|360056_361760_+\|flagellar-basal-body-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|129310
NC_017354.1\|WP_001019068.1\|347777_348584_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NC_017354.1\|WP_000742747.1\|344326_344869_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|274661
NC_017354.1\|WP_001207778.1\|346766_347759_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NC_017354.1\|WP_014533410.1\|352082_352349_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000699931.1\|350815_351121_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000810731.1\|355910_357461_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193

Protein	Function_ID	Function_description	E-value
NC_017354.1\|WP_000835227.1\|348825_349626_+\|DNA-protecting-protein-DprA	gnl\|CDD\|273238	TIGR00732, Protein_smf, DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function. [Cellular processes, DNA transformation].	7.30965e-93
NC_017354.1\|WP_000829839.1\|359344_360013_+\|hypothetical-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.47365e-13
NC_017354.1\|WP_001117113.1\|355014_355911_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.23724e-64
NC_017354.1\|WP_000373230.1\|357469_359086_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_017354.1\|WP_000810731.1\|355910_357461_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017354.1\|WP_079990918.1\|343436_344330_+\|CMP-N-acetylneuraminic-acid-synthetase	gnl\|CDD\|226488	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane].	6.93108e-105
NC_017354.1\|WP_014533409.1\|351720_352095_+\|glycoside-hydrolase-family-protein	gnl\|CDD\|381597	cd00735, T4-like_lys, bacteriophage T4-like lysozymes. Bacteriophage T4-like lysozymes hydrolyze the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1), as well as Dictyostelium.	1.24657e-16
NC_017354.1\|WP_001168283.1\|345736_346519_-\|NAD+-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	8.17089e-126
NC_017354.1\|WP_000051408.1\|348580_348814_+\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|188120	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE. This protein is involved in the process of cell division. This protein prevents the proteins MinC and MinD to inhibit cell division at internal sites, but allows inhibiton at polar sites. This allows for correct cell division at the proper sites. [Cellular processes, Cell division].	2.83074e-25
NC_017354.1\|WP_000833932.1\|344801_345740_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|224577	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane].	4.77589e-90
NC_017354.1\|WP_000599247.1\|349622_350027_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	9.09195e-39
NC_017354.1\|WP_000364707.1\|360056_361760_+\|flagellar-basal-body-M-ring-protein-FliF	gnl\|CDD\|129310	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). [Cellular processes, Chemotaxis and motility].	0
NC_017354.1\|WP_001019068.1\|347777_348584_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	1.74996e-150
NC_017354.1\|WP_000742747.1\|344326_344869_+\|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase	gnl\|CDD\|274661	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.	5.70554e-60
NC_017354.1\|WP_001207778.1\|346766_347759_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	3.71294e-177

>NC_017354.1|WP_000699931.1|350815_351121_+|hypothetical-protein
MKIMHQVRDFLDSCKQTIQKNSNEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKLSDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK
>NC_017354.1|WP_000599247.1|349622_350027_+|Holliday-junction-resolvase-RuvX
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFEGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
>NC_017354.1|WP_000835227.1|348825_349626_+|DNA-protecting-protein-DprA
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGVDIIAQENALPTTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLQSGSMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGHAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAYLKFGDKLLEYELLGKIKRINHIVVLA
>NC_017354.1|WP_000051408.1|348580_348814_+|cell-division-topological-specificity-factor-MinE
MSLFDFFKNKGSAAIATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILPK
>NC_017354.1|WP_001019068.1|347777_348584_+|septum-site-determining-protein-MinD
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRADFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVVGIIDAKSNRAKKGMEVHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVIRTDCESAKAYQRITRRILGEEVEYVEFKAKKGFFSALKGIFS
>NC_017354.1|WP_001207778.1|346766_347759_+|ketol-acid-reductoisomerase
MALPVYYDKDIDLGVIQSLQVGIIGYGAQGEAQALNLRDSKVRVRIGLYQGSLSASKAKAEGFEVLEVKELVQSSDVIIALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVVLPKGVGAILVAPKGPGSALREEYLKNRGLYHLIAIEQENSKNNAKAVALSYAKAMGGGRMGVLETSFKEECESDLFGEQAVLCGGLEAIVRMGFETLIKAGYPEELAYFECVHEVKLVADLLHHKGVEGLRKHISNTAEFGAIKAREPMGSLLEKRMQKILKKIQNGSFAKDFLLEKSLNYPRLNTERKALKETKIEQIGEILRTPFNHKK
>NC_017354.1|WP_001168283.1|345736_346519_-|NAD+-synthase
MQKDYQKLIVYLCDFLEKEAQKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCETFSIPYTEYSIAPYDKIFGSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARHLNIPKKILNKPPSADLFVGQSDEQDLGYPYSVIDPLLKDIEALFQTKPIDAETLTQLGHDEILVKNIISRIQKNAFKLELPAIAKRFNPK
>NC_017354.1|WP_000833932.1|344801_345740_-|tetraacyldisaccharide-4'-kinase
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEVAIVSRGYQRDSKGLVVVSVKGNILVPQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGSKIVFLDDGFRFNFNQFNALLKPKVPPYYPFCLPSGLYRESIKSYKEAHLIITEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKLYFRDHAPFDLELLEKEFYQNNATSLLVTSKDLVKLQDCKLPLSVLDLKLEICPKVLEEIDRYILSYPCNTKERL
>NC_017354.1|WP_000742747.1|344326_344869_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-N-acetyltransferase
MKKNYSYKNTQAIDFTHLNDEEKLLVLEFRNHPNTALWMYSAFISLKTHLQFIEDLKNSPNHRYFLFKEESVYLGVGSITKINFFHKHGYLGIYKNPFLKNRGETILKTLERIAFEEFQLHSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKGYNDQSPLKL
>NC_017354.1|WP_079990918.1|343436_344330_+|CMP-N-acetylneuraminic-acid-synthetase
MQPFEKRMPVKILCDCFLTSGLGHVRRCEKILSFIEKLGVKADLYSHKQNNISAFLEGVGNDDFLIIDSYCLNSKDFYLLKEKTKSLMVIEDKEHAKGFYPKNTKIMNFTLNALKHYHHLSKDYQYYLGVGFYPVDMRFVYERPINTENKEVLITLGGSEQKTLKEIVKILENKGMHLHIISPYIPKNPPKNTHYYSPLSPLEFSSLMKFCACAISAAGQTLYELALSQMPSLIIPIASNQIIQSQEFESLGIFKQTSLKTLAKDFENLQIQKNQAWAKNLAFGSELEGALREFLEI
>NC_017354.1|WP_014533409.1|351720_352095_+|glycoside-hydrolase-family-protein
MDSEGFSPSVYADKTGHPTIGYGYNLSVYSYESKRITKAYGLLTDILKENHRALLSYGWYKNLDAMRRMVILDLSYNLGLSGLFKFKQFIKAIEDKNYDLAVERLQKSPYFNQVKKERQGIWRF
>NC_017354.1|WP_014533410.1|352082_352349_+|hypothetical-protein
MEILKLGGCEKHCKKKYMIEKVIKEVGLELKSKSVMPYFFNEYDLTKNANREEPKRLRSQIISILMKTPKGREILKEYLNEGCILLGE
>NC_017354.1|WP_042350016.1|352360_352429_+|hypothetical-protein
MLKNFKKAFFRALCLGALCFIG
>NC_017354.1|WP_000458573.1|353024_353810_+|hypothetical-protein
MFCCFKTILGTSVIVGVLLGLWRWTYDKSCFSLVFVLLILGIVACSYISLKMHQRKCFVKCFVNKKSYLFKMLHSPIMVSCFYFIFSIFTSISIAYSVLDYNWMMWGLVFCTIVVCVAVFGTLEKMLKSIIKEDYLMLISREVSAFVGTLFFIGLSCYVIYHGNMPDYLRPALIDTIKAASDSAYSNCDYTSYVLEFKKMLEGFAWWGMFKAESMGLNKGFMVAGWVAFIIYNALSGIAISRLSAQIIYCLSKCIRGECGK
>NC_017354.1|WP_001013455.1|354181_355021_+|hypothetical-protein
MNGKINTQIDGFFDQVENNVDKFLDWHYSIKGDYSELALFAAKKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKRLSKTYASLLNQHEKFVSETALKGVDTDLSQNAKILDTLGDEVARKLKANFTGTIGATAGVSGLAIAVKLTPKLVAKIGAKLGAKVGGKFLAKIGTALSGSWTCGSFAPACAITLWFGSDAVINFIDEWLHRDDFKKEILNNINEVKENLKNSYKQQFNDSFVKISQELQESFKNAPVVEKKTIKEHIGDLKQTPEENNQKINQ
>NC_017354.1|WP_001117113.1|355014_355911_-|RluA-family-pseudouridine-synthase
MPFVEEEFEILKPTKALFFVHDVLKCSLKEAQRHLDKQRLKQNQQAVRKSQMIQGVVRLIHFKPNEKTQALVFETKDFGVFDKPAQVYTHPKGYFYHESLLDCIQSHFSKNAHPAHRLDYETSGLVLAGKTLQSVKDLKALFMQKKVKKTYLALVHGLIEKSMKIDKPILTPQNIQKDLHIRSKISPLGKPSTTLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVDHRIVGEGLYGVADEEARGYLQLKRENHAPLLMLHAFRLGFEFKGANYKITSQIPKRFMPFLKDLSLFY
>NC_017354.1|WP_000810731.1|355910_357461_-|single-stranded-DNA-specific-exonuclease-RecJ
MKQKLKAQIKERVASIAYKEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGVISSTIMAKFFESLNYKHVRIVIPNRFMDGYGISKKFLEKHHAPLIITVDNGISAFEAARFCKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLGKEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRSLKASDISFSIAPLINSAGRMQDAKIALDFLSANNFQDGYFLYERLKACNLKRKMIQQQVFEEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSNIDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILPFCEKEPPLTLTLKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQVLRFKDKECIKEAIYFNTERFLKAGEKVSAIFSVELDEYSNEPKMFVKSLL
>NC_017354.1|WP_000373230.1|357469_359086_-|CTP-synthase-(glutamine-hydrolyzing)
MDRAKFIFVTGGVLSSLGKGISSSSIATLLQHCNYQVSILKIDPYINIDPGTMSPLEHGEVFVTSDGAETDLDIGHYERFLNRNLTRLNNFTTGQIFSSVIENERKGEYLGKTIQIVPHVTDEIKRRIKSAAKGLDFLIVEVGGTVGDMEGMFYLEAIRQLKLELGNEKVINVHVTLIPYIQTTNELKTKPTQHSVQELRRLGVTPQIILARSPKPLDKELKNKIALSCDVEQDSVIVATDTKSIYACPILFLQEGILTPIARRFNLNKLHPKMAAWNTLVEKIIAPKHKVKIGFVGKYLSLKESYKSLIEALIHAGAHLDTQVNIEWLDSENFNEKTDLESVDAILVPGGFGERGIEGKICAIQRARLEKLPFLGICLGMQLAIVEFCRNVLGLKGANSTEFNQRCEYPVVYLIEDFIDQNHQKQVRTYNSPLGGTMRLGEYECEIMPNSLLEKAYKKPSIKERHRHRYEINPKYRQEWENKGLKVVGFGANHLIEAIELEDHPFFVGVQFHPEFTSRLQSPNPIILDFIKSTLHKS
>NC_017354.1|WP_000829839.1|359344_360013_+|hypothetical-protein
MAENSFKNVSAQPKVFFLLQVKTLFLLGGVFSAFFILMVGLVFFDYAHSMDNAIFNFARSTSLNSSPILTLILQNAARLGSSQFVLPLSLLVGVFLSLYRRNLALGVWFVLSVVLFEALLESLKYLLAHSIQWFSYSANFPNATALSLALFYGLLILLIPHLITHQALKNILFYSLFGLVFLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
>NC_017354.1|WP_000364707.1|360056_361760_+|flagellar-basal-body-M-ring-protein-FliF
MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFERLDSSDNALILQHLQQNQIPYKILKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDTKDFGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALEQLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLEVMPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAKG

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Crispr_ID: NC_017354_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017354_3

876740-876836

Orphan

Consensus_repeat	Method
TTAAAAATGGGGTTTTTAACTTTATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017354_3

>merge|NC_017354|3|876740-876836|CRISPRCasFinder
TTAAAAATGGGGTTTTTAACTTTATTTTCTTTATTTTTTGGATAAGTCTTACTTGATACTTTTTAATCTTTAAAAATAGGGTTTTTAACTTTATTTT

>NC_017354|3|3|876740-876836|CRISPRCasFinder
TTAAAAATGGGGTTTTTAACTTTATTTT	CTTTATTTTTTGGATAAGTCTTACTTGATACTTTTTAATCT
TTAAAAATAGGGTTTTTAACTTTATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017354.1\|WP_000461049.1\|871944_872487_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_017354.1\|WP_000471709.1\|867791_868646_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NC_017354.1\|WP_000690526.1\|877423_878188_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|129147
NC_017354.1\|WP_000704242.1\|886452_887577_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|273204
NC_017354.1\|WP_079990937.1\|869708_870617_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|224081
NC_017354.1\|WP_000757121.1\|868719_869712_-\|flagellin-deglycosylation-protein	unknown	unknown	gnl\|CDD\|225577
NC_017354.1\|WP_000231018.1\|881589_882801_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_017354.1\|WP_000945140.1\|879591_880941_-\|plasminogen-binding-protein-PgbA	unknown	unknown	gnl\|CDD\|373843
NC_017354.1\|WP_000642507.1\|873002_875093_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|226114
NC_017354.1\|WP_001182004.1\|884118_886440_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NC_017354.1\|WP_000246189.1\|883241_883526_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000488779.1\|865598_867044_-\|type-IV-secretion-system-apparatus-protein-Cag3	unknown	unknown	gnl\|CDD\|273066
NC_017354.1\|WP_001292847.1\|870613_871945_-\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
NC_017354.1\|WP_042349663.1\|883631_884024_+\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000785751.1\|867272_867620_-\|cag-pathogenicity-island-protein-Cag1	unknown	unknown	unknown
NC_017354.1\|WP_000637144.1\|875231_876677_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NC_017354.1\|WP_000849544.1\|876977_877094_-\|hypothetical-protein	unknown	unknown	unknown
NC_017354.1\|WP_000119965.1\|880951_881590_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129162
NC_017354.1\|WP_079990938.1\|872490_872943_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|129262
NC_017354.1\|WP_000890703.1\|878210_879590_-\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|273050

Protein	Function_ID	Function_description	E-value
NC_017354.1\|WP_000461049.1\|871944_872487_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	4.55108e-103
NC_017354.1\|WP_000471709.1\|867791_868646_+\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	8.8035e-24
NC_017354.1\|WP_000690526.1\|877423_878188_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|129147	TIGR00036, 4-hydroxy-tetrahydrodipicolinate_reductase, 4-hydroxy-tetrahydrodipicolinate reductase. [Amino acid biosynthesis, Aspartate family].	9.00008e-115
NC_017354.1\|WP_000704242.1\|886452_887577_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|273204	TIGR00663, DNA_polymerase_III_subunit_beta, DNA polymerase III, beta subunit. All proteins in this family for which functions are known are components of the DNA polymerase III complex (beta subunit). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.25164e-128
NC_017354.1\|WP_079990937.1\|869708_870617_-\|GTPase-Era	gnl\|CDD\|224081	COG1159, Era, GTPase [General function prediction only].	2.1298e-123
NC_017354.1\|WP_000757121.1\|868719_869712_-\|flagellin-deglycosylation-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	7.50528e-106
NC_017354.1\|WP_000231018.1\|881589_882801_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.90215e-39
NC_017354.1\|WP_000945140.1\|879591_880941_-\|plasminogen-binding-protein-PgbA	gnl\|CDD\|373843	pfam15436, PGBA_N, Plasminogen-binding protein pgbA N-terminal. PGBA_N is an N-terminal family of bacterial proteins that bind plasminogen. This activity was identified in In Helicobacter pylori where it is thought to contribute to the virulence of this bacterium. Both PgbA and PgbB are surface-exposed proteins that mediate binding to plasminogen such that it can be converted into plasmin in the presence of a Pg activator.	3.94339e-100
NC_017354.1\|WP_000642507.1\|873002_875093_-\|DUF262-domain-containing-protein	gnl\|CDD\|226114	COG3586, COG3586, Uncharacterized conserved protein [Function unknown].	3.76087e-40
NC_017354.1\|WP_001182004.1\|884118_886440_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NC_017354.1\|WP_000488779.1\|865598_867044_-\|type-IV-secretion-system-apparatus-protein-Cag3	gnl\|CDD\|273066	TIGR00414, Serine--tRNA_ligase, seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. [Protein synthesis, tRNA aminoacylation].	0.00431828
NC_017354.1\|WP_001292847.1\|870613_871945_-\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_017354.1\|WP_000637144.1\|875231_876677_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NC_017354.1\|WP_000119965.1\|880951_881590_-\|hypothetical-protein	gnl\|CDD\|129162	TIGR00052, GDP-mannose_pyrophosphatase_NudK, nudix-type nucleoside diphosphatase, YffH/AdpP family. Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans. [Unknown function, Enzymes of unknown specificity].	7.22715e-85
NC_017354.1\|WP_079990938.1\|872490_872943_-\|50S-ribosomal-protein-L9	gnl\|CDD\|129262	TIGR00158, 50S_ribosomal_protein_L9, ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.19703e-50
NC_017354.1\|WP_000890703.1\|878210_879590_-\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	0

>NC_017354.1|WP_000637144.1|875231_876677_+|type-I-glutamate--ammonia-ligase
MIVRTQNSESKIKEFFEFCKENEVEFVDFRFSDIKGTWNHIAYSFGALTHGMFKEGIPFDASSFKGWQGIEHSDMILTPDLVRYFIDPFSADVSVVVFCDVYDVYKNQPYEKCPRSIAKKALQHLKDSGLGDVAYFGAENEFFIFDSIKIKDASNSQYYEVDSEEGEWNRDKSFENGVNFGHRPGKQGGYMPVPPTDTMMDIRTEIVKVLNQVGLETFVVHHEVAQAQGEVGVKFGDLVEAADNVQKLKYVVKMVAHLNGKTATFMPKPLYGDNGSGMHTHVSVWKNNENLFSGETYKGLSEFALHFLGGVLRHARGLAAFTNASTNSYKRLIPGYEAPSILTYSANNRSASVRIPYGISKNSARFEFRFPDSSSNPYLAFAAILMAGMDGVKNKIDPGEAMDINLFKLTLDEIREKGIKQMPHTLRRSLEEMLADKQYLKESQVFSEEFIQAYQSLKFNAEVFPWESKPHPFEFITTYSC
>NC_017354.1|WP_000642507.1|873002_875093_-|DUF262-domain-containing-protein
MKADAMKLLDFIGKSQEKQFVIPIYQRVYSWEKEQCKQLWDDIIKTGGNDQMNGHFIGSIVFVQDGIYTTSHNELLIIDGQQRLTTITLLFIALRDHLNDEDEFLEKFSHQKIQNRYLINSDEKGDKKFKLILSEPDRDILLSLIDKNRRKPSELSSKIMENFKLFEEWIRKNTDKLETIFKGLDKLMVVEISLERGKDNPQLIFESMNSTGKDLTQTDLIRNYILMGLEPEKQKIFYEKYWRAMEEDFKQDETLFNQFIRHYLTIKTREIPNINKVYVALKDYQQKEGIGIEDLLKDLQKYCGYFCQIVFKKKEAYKDLNKALSFLVDLEMDVIYPLLLELYSDYSDSVLSKQDFIPIIDLIESYICRRAVCGLGTNSLNKVFLSFTKHIQKDEYFESLKAHFGYLTEKQRFPNNDEFKKLFITIDFYNFKKNKYFFERLENFDRKERVYTHEYTKEHIMPQTLEEEWEKDLGENFQEIHDKYLHTIGNLTLTGYNGKYSNKSFQEKQGMEKGFKQSPLKLNQSLKNLESFGEEEIKKRANDLADLALKIWTYPKLDAETLEKYKPKKDKKEKKVYDLSSYKFGSHSRELFDILNKEIKALDEKIVENFNQDYISYKFDKNFVDIVVQTRDLKLYLNMKFNELQDEKNLARDMTNKGHLGNGDIEVKLETKENIPYCLGLIKQALEKQMGGRNRQ
>NC_017354.1|WP_079990938.1|872490_872943_-|50S-ribosomal-protein-L9
MMKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANQKAKLATNEVINKYKAEVKKKAEKEALEKVQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLDLDKKDIELKHPIKSTGIYEIEAKLGSGVVGAFKIDVVAE
>NC_017354.1|WP_000461049.1|871944_872487_-|ATP-dependent-protease-subunit-HslV
MFEATTILGYRGEMGGKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNLDHIFILSGTGDVLEAEDNKIAAIGSGGNFALSAARALDNFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL
>NC_017354.1|WP_001292847.1|870613_871945_-|HslU--HslV-peptidase-ATPase-subunit
MSELNMTPREIVAYLDEYIIGQKEAKKFIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIAKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESIKMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEKIMYMILTQTKTSIIKQYQALLKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFEAEDYSGQNVTITKELVQSKLEDLVADENLVKYIL
>NC_017354.1|WP_079990937.1|869708_870617_-|GTPase-Era
MMKTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDDLKGYEEFLSLCQKPHILALSKIDTATHKQVLQKLQEYQQYDSQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEKMRDIYKEIIRESLFDFLSDEIPYESDVMIDKFIEEERIDKVYAHIIVEKESQKKIVIGKNGVNIKRIGTSARLKMQEVGEKKVFLNLQVIAQKSWSKEEKSLQKLGYIHKRGMD
>NC_017354.1|WP_000757121.1|868719_869712_-|flagellin-deglycosylation-protein
MKKVLPALLMGFVGLNADERLLEIMRLYQKQGLEVVGQKLDSYLADKSFWAEELQNKDTDFGYYQNKQFLFVANKSKPSLEFYEIDNNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIENPLLSSYDKILKGEKAFLITYEDKFFPSTKEELSMILSSLFQWKEAWARGDFERYMRFYNPNFTRYDGMQFNAFKEYKKRVFAKNEKKNIAFSSINVIPYPNSQNKRLFYVAFDQDYKAYQQNKLSYSSNSQKELYVEIENNQVSIIMEK
>NC_017354.1|WP_000471709.1|867791_868646_+|sel1-repeat-family-protein
MFKDFYRTTLSFLKPLLLLLVLLLSFSLCIADEYISISDDWDERARNQWDEIARNHKTYYFENGLDHFNQGQYKQAFKDFKLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKAQFYAQNAIKGYGSGLLGGALILGYMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNYFANNFRLPNLAFTSMLIGSRFIDLSGLSANPIKFGKKFGILVMKSTQIKDKTLLWEDIAEISSNIILLKQQMGEILYRIGIAYKEGLGTRKQKSRAKKFLQKSAEFGYEKAMEAL
>NC_017354.1|WP_000785751.1|867272_867620_-|cag-pathogenicity-island-protein-Cag1
MADTINTTEATHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQSKAATTVNNETQKSQATSVTNEPTEAKETKD
>NC_017354.1|WP_000488779.1|865598_867044_-|type-IV-secretion-system-apparatus-protein-Cag3
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEARQRQQIPDHKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKVLNKRNAKFVLKINENLPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTSDSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPKTSNSFETMRVIKEKENYNGLLVDKETTIKRSYEGTLISENSYSKKSPINPNDLRNLEEEIKSYYIKSNGLCYANGISLYAKIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDSK
>NC_017354.1|WP_000849544.1|876977_877094_-|hypothetical-protein
MKTIRNSVFIGVSLLGGCTSVETYFDALRVASIKDACL
>NC_017354.1|WP_000690526.1|877423_878188_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIGVYGASGRIGKLLLEELKGGYKGLELSSVFVRQKCETDFSSFSHAPLVTNDLKAFVRACECVIDFSLPKGVDNLLEALLECPKILVSGTTGLEKETLEKMQQLALKAPLLHAHNMSIGIMMLNQLAFLASLKLKDADIEIVETHHNLKKDAPSGTALSLYETCAKARGYDKKNALTTHREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLKDKAAKKYEINEMFG
>NC_017354.1|WP_000890703.1|878210_879590_-|glycolate-oxidase-subunit-GlcD
MLEKQHIQYFKNLVGGEDFFTDLAHLNAYCYDATKERHLPSGVIFPRNEQEISQILKYCNEHRIIVVPRGAGSGFTGGALSVSGGLVLSVEKHLDKILEIDTKNLIARVEPGVINKHFQNEVEKLNLFYPPDPASENQSTLGGNVAENAGGMRAAKYGITKDYVMAMRVVLANGEIIRAGKKTIKDVAGFNVAGLMIASEGCLGVISEITLKLLAKPPLKQSAMGVFNHIEDAMNAVYKTMSSGVTPVAMEFLDNLSIKAVEERFSKGLPKDAGAILITQVDGVVKEQIAWQLNEIEKHFKANGCVGFKIAQNEQEEQDLWFSRRNASQSISVYGKKKLNEDVTVPRASLPSLLQEVAKISQKYGFKIPCFGHTGDGNVHVNIMLEDPKRDLEKGHKAMEEIFQAAISLEGTLSGEHGIGLSKAKFMPLAFNHSEMELFRNIKKALDPNNILNPFKMGL
>NC_017354.1|WP_000945140.1|879591_880941_-|plasminogen-binding-protein-PgbA
MLRLLIGLLLMSFISLQSASWQEPLRVSIEFVDLPKKIIRFPAHDLQVGEFGFVVTKLSDYEIVNSEVVIIAVENGVATAKFRAFESMKQSHLPTPRMVARKGDLVYFRQFNNQAFLIAPNDELYEQIRATNTDINFISSDLLVTFLNGFDPKIANLRKACNVYSVGVIYIVTTNTLNILSCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVKKEKRKEVRIKKREGKIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAEHKLDAKEERRYLRDERKKAKATKKAMEFEEREKEHDERDEKETEGRRKALEMDKGNEKVNTKENEQEIKQEAIKEPSNGNNATQQGEKQNAPKENKAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALEAGKK
>NC_017354.1|WP_000119965.1|880951_881590_-|hypothetical-protein
MSYFKNAFNQKSLIDDSSVYLEPCSSSNFIELKRMHYNEENTKKTWDIIKSLDSVAVLLYEKESDCFVIVKQFRPAIYARHFHFKRDQDQNIDGYTYELCAGLVDKANKSLEEIVCEEALEECGYQISPKNLETIGQFYSATGLSGSLQTLYYAEVCADLKVSKGGGIDTEKIEVLFLERSKALDFIMDFQYAKTTGLSLAILWHLKKFKNV
>NC_017354.1|WP_000231018.1|881589_882801_-|M23-family-metallopeptidase
MVFFHKKIILNFICSLMVAFLSHGVFLKADETAKKQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDTNNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIVKATNDPLLANQLMNAYKKSVPFKRLAKNDKIAIVYTRDYRVGQAFGQPSIKMAMVSSRSNQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFIGVKAGYGKVVEIHLNELRLVYAHMSAFAKGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQHSKQKLEELLKTHSFEKNSFYLLEGF
>NC_017354.1|WP_000246189.1|883241_883526_+|hypothetical-protein
MATTISLKKDNLIKKGLVGFSWTTLFFSFFVPIIRGDVKWAVIMFIAALFTSFISNIIFAFIYNKQYTTGLLESGYEPTDEYSRGMLRAKGIIS
>NC_017354.1|WP_042349663.1|883631_884024_+|hypothetical-protein
MVATTINLKKDNLIKKGFVGFSWTTLFFNFWVPVIRGDARWAVIMFIFLFCYSFVVVVTIGGIFADTDIDKIPDDELIGIFLIVSLGSIIINIIFAFTYNKQYTTRLLESGYEPTDEYSRGILRSRDMIA
>NC_017354.1|WP_001182004.1|884118_886440_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITLTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPVISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLATKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTEIYLKDSIALDHFLIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESLHLHAQTPKGLVEFNLDDNLFKEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV
>NC_017354.1|WP_000704242.1|886452_887577_-|DNA-polymerase-III-subunit-beta
MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQSSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLVIKQNKSSFKLPMFDADEFPEFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKDQTLSVVGTDTKRLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHTFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSSTIKLTLEKNNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFVLKCNEPSSPFLIQEPLDEKQSHLNAKISTLMMPITL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_017354.1	134688-134715	2	0.929

1. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to position: 134688-134715, mismatch: 2, identity: 0.929

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgtcttttgt	Protospacer
*********************.**.***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP019918	Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence	20481-20508	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP019918	Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence	51224-51251	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_000948	Borreliella burgdorferi B31 plasmid cp32-1, complete sequence	27272-27299	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_000953	Borreliella burgdorferi B31 plasmid cp32-8, complete sequence	27407-27434	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP019846	Borreliella burgdorferi plasmid cp32-1, complete sequence	27248-27275	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP019849	Borreliella burgdorferi plasmid cp32-5, complete sequence	27196-27223	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP019756	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence	27197-27224	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP019756	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence	57940-57967	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP030046	Enterococcus faecalis strain C54 plasmid pC54, complete sequence	26261-26288	3	0.893
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_018979	Borrelia burgdorferi 297 plasmid 297_cp32-12, complete sequence	27344-27371	4	0.857
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_018981	Borrelia burgdorferi 297 plasmid 297_cp32-5, complete sequence	27185-27212	4	0.857
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_019003	Borrelia burgdorferi 297 plasmid 297_cp32-1, complete sequence	27451-27478	4	0.857
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN693011	Marine virus AFVG_117M58, complete genome	42494-42521	4	0.857
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KX119177	Helicobacter phage SwA626G, complete genome	7846-7873	4	0.857
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP013848	Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence	19034-19061	4	0.857
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MG649966	Vibrio virus Ceto, complete genome	72538-72565	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_042094	Vibrio phage Ceto, complete genome	72538-72565	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	746219-746246	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KT345706	Vibrio phage vB_VorS-PVo5, complete genome	3117-3144	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP031899	Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence	38845-38872	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP028382	Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence	117776-117803	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP027441	Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence	54657-54684	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP027372	Escherichia coli strain 2015C-3905 plasmid unnamed	59642-59669	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_007365	Escherichia coli EH41 plasmid pO113, complete sequence	123821-123848	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP024291	Escherichia coli O178:H19 strain 2012C-4431 plasmid unnamed2, complete sequence	34562-34589	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KM983328	Clostridium phage phiCT453B, complete genome	32388-32415	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MH648920	Microviridae sp. isolate cthi004, complete genome	3998-4025	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN694392	Marine virus AFVG_250M8, complete genome	25571-25598	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP027585	Escherichia coli strain 00-3076 plasmid unnamed, complete sequence	50665-50692	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP027451	Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence	53900-53927	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN694558	Marine virus AFVG_250M9, complete genome	14015-14042	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN694640	Marine virus AFVG_250M10, complete genome	14023-14050	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_049857	Lactococcus phage P1048, complete genome	14007-14034	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	27056-27083	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ289555	Bacillus anthracis phage W Beta, complete genome	29856-29883	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_007814	Bacillus phage Fah, complete genome	29663-29690	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	29663-29690	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ222853	Bacillus anthracis phage Gamma isolate 51, complete genome	27695-27722	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	29663-29690	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	29699-29726	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ222851	Bacillus anthracis phage Cherry, complete genome	27057-27084	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	DQ289556	Bacillus anthracis phage Gamma isolate d'Herelle, complete genome	27824-27851	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_007734	Bacillus phage WBeta, complete genome	29856-29883	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KY963369	Bacillus phage Tavor_SA, complete genome	31225-31252	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_007458	Bacillus phage Gamma, complete genome	27695-27722	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN694140	Marine virus AFVG_250M934, complete genome	599-626	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KX119203	Helicobacter phage PtB89G, complete genome	7673-7700	5	0.821
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP024036	Bacillus aryabhattai strain K13 plasmid unnamed1	45218-45245	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP023318	Bacillus megaterium strain A plasmid p1, complete sequence	55711-55738	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KF302032	UNVERIFIED: Pseudoalteromonas phage HS5, complete genome	33345-33372	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	HM588722	Pseudoalteromonas phage H105/1, complete genome	23153-23180	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP014118	Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed1, complete sequence	17118-17145	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KF302033	UNVERIFIED: Pseudoalteromonas phage HS1, complete genome	32949-32976	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	355566-355593	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP033793	Bacillus sp. FDAARGOS_527 plasmid unnamed6, complete sequence	14569-14596	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP014285	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C125, * SEQUENCING IN PROGRESS *	3556-3583	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013502	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S23-C10	26363-26390	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013505	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S38-C26	26580-26607	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013504	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S34-C29	25322-25349	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013795	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S43-C156, * SEQUENCING IN PROGRESS *	9013-9040	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013506	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S42-C35	12735-12762	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013786	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S31-C108, * SEQUENCING IN PROGRESS *	5206-5233	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	GU943055	Uncultured phage MedDCM-OCT-S04-C26 genomic sequence	24780-24807	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013791	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S36-C101, * SEQUENCING IN PROGRESS *	11837-11864	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	LC425524	Uncultured phage DNA, contig: NODE656	5827-5854	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013793	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S39-C151, * SEQUENCING IN PROGRESS *	6939-6966	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013787	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S32-C104, * SEQUENCING IN PROGRESS *	11837-11864	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_LR214999	Mycoplasma conjunctivae strain NCTC10147 plasmid 3	59451-59478	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	LR214965	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11	49043-49070	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MK449010	Streptococcus phage Javan90, complete genome	1430-1457	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013783	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S24-C161, * SEQUENCING IN PROGRESS *	6579-6606	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MK448798	Streptococcus phage Javan533, complete genome	1434-1461	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KX011028	Staphylococcus phage pSco-10, complete genome	78754-78781	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775688	Lactococcus phage LP0004b, complete genome	19976-20003	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MK448681	Streptococcus phage Javan141, complete genome	1432-1459	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP014448	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S35-C81, * SEQUENCING IN PROGRESS *, 2 ordered pieces	13384-13411	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013794	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S41-C142, * SEQUENCING IN PROGRESS *	7352-7379	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN871511	UNVERIFIED: Vibrio phage vspsw1, complete genome	103528-103555	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775694	Lactococcus phage LP0212, complete genome	19517-19544	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775696	Lactococcus phage LP0509, complete genome	19517-19544	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013796	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S44-C315, * SEQUENCING IN PROGRESS *	593-620	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF448557	Lactococcus phage 37201, complete genome	20495-20522	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_013155	Lactococcus phage CB13, complete genome	20020-20047	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN871505	UNVERIFIED: Vibrio phage ValDsh2, complete genome	8286-8313	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KP793102	Lactococcus phage 936 group phage PhiA.16, complete genome	18682-18709	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775701	Lactococcus phage LP1110, complete genome	19517-19544	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775693	Lactococcus phage LP0209, complete genome	19517-19544	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN693111	Marine virus AFVG_25M354, complete genome	29951-29978	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_049402	Lactococcus phage 38507, complete genome	18189-18216	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775697	Lactococcus phage LP0604, complete genome	19517-19544	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775699	Lactococcus phage LP1005, complete genome	19516-19543	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MT442039	Vibrio phage vB_ValS_X1, partial genome	8134-8161	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775700	Lactococcus phage LP1011, complete genome	19517-19544	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KP793103	Lactococcus phage 936 group phage Phi19, complete genome	18681-18708	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_049423	Lactococcus phage LP0903, complete genome	20003-20030	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_049401	Lactococcus phage 38503, complete genome	16805-16832	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KP793104	Lactococcus phage 936 group phage PhiB1127, complete genome	18884-18911	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KP793109	Lactococcus phage 936 group phage PhiC0139, complete genome	18884-18911	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_049414	Lactococcus phage 96403, complete genome	16903-16930	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013503	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S29-C22	32253-32280	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MK301439	Lactococcus phage AV09, complete genome	18682-18709	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775691	Lactococcus phage LP0109, complete genome	19527-19554	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MN871510	UNVERIFIED: Vibrio phage valsw3, complete genome	92198-92225	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KP793106	Lactococcus phage 936 group phage PhiA1127, complete genome	19127-19154	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013785	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S30-C161, * SEQUENCING IN PROGRESS *	7141-7168	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013789	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S33-C266, * SEQUENCING IN PROGRESS *	593-620	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MK448783	Streptococcus phage Javan503, complete genome	1355-1382	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MK448967	Streptococcus phage Javan510, complete genome	1434-1461	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MH925094	UNVERIFIED: Vibrio phage VspSw_1, complete genome	8333-8360	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	KY349816	Streptococcus phage Str01, complete genome	23599-23626	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_049369	Lactococcus phage 936 group phage PhiLj, complete genome	18695-18722	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MK448833	Streptococcus phage Javan87, complete genome	1430-1457	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_049482	Lactococcus phage CHPC362, complete genome	19002-19029	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775702	Lactococcus phage LP1407, complete genome	19497-19524	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	AP013784	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S27-C105, * SEQUENCING IN PROGRESS *	10391-10418	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_004588	Streptococcus prophage 315.5, complete genome	1583-1610	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	MF775695	Lactococcus phage LP0304, complete genome	19517-19544	6	0.786
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	410314-410341	7	0.75
NC_017354_1	1.1\|134814\|28\|NC_017354\|CRISPRCasFinder	134814-134841	28	NZ_CP014848	Bacillus thuringiensis strain HD12 plasmid pHD120017, complete sequence	10847-10874	7	0.75

1. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP019918 (Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

2. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP019918 (Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

3. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_000948 (Borreliella burgdorferi B31 plasmid cp32-1, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

4. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_000953 (Borreliella burgdorferi B31 plasmid cp32-8, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

5. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP019846 (Borreliella burgdorferi plasmid cp32-1, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

6. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP019849 (Borreliella burgdorferi plasmid cp32-5, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

7. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP019756 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

8. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP019756 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgttctgcttttcgt	Protospacer
********************.***..**

9. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP030046 (Enterococcus faecalis strain C54 plasmid pC54, complete sequence) position: , mismatch: 3, identity: 0.893

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tgtttgtttttctggttcttttttctgt	Protospacer
* *********** ***** ********

10. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_018979 (Borrelia burgdorferi 297 plasmid 297_cp32-12, complete sequence) position: , mismatch: 4, identity: 0.857

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctgcttttcgt	Protospacer
************** *****.***..**

11. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_018981 (Borrelia burgdorferi 297 plasmid 297_cp32-5, complete sequence) position: , mismatch: 4, identity: 0.857

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctgcttttcgt	Protospacer
************** *****.***..**

12. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_019003 (Borrelia burgdorferi 297 plasmid 297_cp32-1, complete sequence) position: , mismatch: 4, identity: 0.857

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctgcttttcgt	Protospacer
************** *****.***..**

13. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 4, identity: 0.857

tttttgtttttcttgttctgttttctgt	CRISPR spacer
ttttggtttttctttttctgtttttttt	Protospacer
**** ********* *********.* *

14. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KX119177 (Helicobacter phage SwA626G, complete genome) position: , mismatch: 4, identity: 0.857

tttttgtttttcttgttctgttttctgt-	CRISPR spacer
tttttgtttttgttgttcta-tttctatg	Protospacer
*********** *******. *****.*

15. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP013848 (Clostridium botulinum strain Af650 plasmid pRSJ14_1, complete sequence) position: , mismatch: 4, identity: 0.857

tttttgtttttcttgttctgttttctgt-	CRISPR spacer
ttttagtttttcttcttctg-tttctata	Protospacer
**** ********* ***** *****.*

16. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MG649966 (Vibrio virus Ceto, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttccttcttctgttttctca	Protospacer
 *********.*** ***********

17. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_042094 (Vibrio phage Ceto, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttccttcttctgttttctca	Protospacer
 *********.*** ***********

18. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttattgttatgttttcgac	Protospacer
*********** ***** ******* ..

19. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KT345706 (Vibrio phage vB_VorS-PVo5, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttccttcttctgttttctca	Protospacer
 *********.*** ***********

20. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP031899 (Escherichia coli O113:H21 strain FWSEC0010 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

21. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP028382 (Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

22. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP027441 (Escherichia coli strain 2012C-4502 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

23. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP027372 (Escherichia coli strain 2015C-3905 plasmid unnamed) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

24. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_007365 (Escherichia coli EH41 plasmid pO113, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

25. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP024291 (Escherichia coli O178:H19 strain 2012C-4431 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

26. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KM983328 (Clostridium phage phiCT453B, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgtttttcttcttctgttatccat	Protospacer
 ************* ******* **..*

27. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MH648920 (Microviridae sp. isolate cthi004, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgatctgcttttgat	Protospacer
*************** ****.***. .*

28. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN694392 (Marine virus AFVG_250M8, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttctttttcttgttttgttttttaa	Protospacer
***** ***********.******.*.

29. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP027585 (Escherichia coli strain 00-3076 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

30. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP027451 (Escherichia coli strain 2014C-3097 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttttgtttttctt	Protospacer
************** **.******.. *

31. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN694558 (Marine virus AFVG_250M9, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttctttttcttgttttgttttttaa	Protospacer
***** ***********.******.*.

32. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN694640 (Marine virus AFVG_250M10, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttctttttcttgttttgttttttaa	Protospacer
***** ***********.******.*.

33. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttccttttctgttttgttc	Protospacer
************.* ********* * .

34. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

35. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ289555 (Bacillus anthracis phage W Beta, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

36. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

37. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

38. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ222853 (Bacillus anthracis phage Gamma isolate 51, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

39. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

40. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

41. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ222851 (Bacillus anthracis phage Cherry, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

42. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to DQ289556 (Bacillus anthracis phage Gamma isolate d'Herelle, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

43. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_007734 (Bacillus phage WBeta, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

44. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttctttttcttcttctgtttctttt	Protospacer
***** ******** ********..* *

45. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_007458 (Bacillus phage Gamma, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttctttttctttttctttt	Protospacer
************** **** ***..* *

46. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN694140 (Marine virus AFVG_250M934, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcctgttctttttcccgc	Protospacer
************.****** ***.*.*.

47. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KX119203 (Helicobacter phage PtB89G, complete genome) position: , mismatch: 5, identity: 0.821

tttttgtttttcttgttctgttttctgt	CRISPR spacer
gttttgtttttcttgttctttgttgttt	Protospacer
 ****************** * ** * *

48. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP024036 (Bacillus aryabhattai strain K13 plasmid unnamed1) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttttttgttatgttttcaag	Protospacer
 **********.***** ******* .

49. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP023318 (Bacillus megaterium strain A plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttttttgttatgttttcaag	Protospacer
 **********.***** ******* .

50. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KF302032 (UNVERIFIED: Pseudoalteromonas phage HS5, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttctgtttttcttattctgtttttcag	Protospacer
***.**********.*********...

51. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to HM588722 (Pseudoalteromonas phage H105/1, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttctgtttttcttattctgtttttcag	Protospacer
***.**********.*********...

52. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP014118 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
ttgttgtttttcttgttctgttaaatca	Protospacer
** *******************   *

53. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KF302033 (UNVERIFIED: Pseudoalteromonas phage HS1, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttctgtttttcttattctgtttttcag	Protospacer
***.**********.*********...

54. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cttttgtttttcttgttccgcttttttc	Protospacer
.*****************.*.***.* .

55. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP033793 (Bacillus sp. FDAARGOS_527 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
ttcttctttttcttgttctgtttgattg	Protospacer
**.** *****************  *

56. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP014285 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C125, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttcttcttcttgttctgtttccata	Protospacer
***** **.**************.*

57. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013502 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S23-C10) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

58. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013505 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S38-C26) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

59. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013504 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S34-C29) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

60. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013795 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S43-C156, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

61. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013506 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S42-C35) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

62. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013786 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S31-C108, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

63. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to GU943055 (Uncultured phage MedDCM-OCT-S04-C26 genomic sequence) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

64. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013791 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S36-C101, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

65. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to LC425524 (Uncultured phage DNA, contig: NODE656) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
ccgttgtttttcttgttctattttttct	Protospacer
.. ****************.****.* *

66. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013793 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S39-C151, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

67. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013787 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S32-C104, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

68. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgtttttcttgtttagttttagtt	Protospacer
 ****************. *****   *

69. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgtttttcttgtttagttttagtt	Protospacer
 ****************. *****   *

70. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

71. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013783 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S24-C161, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

72. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

73. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KX011028 (Staphylococcus phage pSco-10, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
atgttgtttttcttggtctgtttttgat	Protospacer
 * ************ ********. .*

74. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775688 (Lactococcus phage LP0004b, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

75. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

76. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP014448 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S35-C81, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

77. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013794 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S41-C142, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

78. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN871511 (UNVERIFIED: Vibrio phage vspsw1, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tgcttctttttcttgttctgtttgcttg	Protospacer
* .** ***************** **

79. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775694 (Lactococcus phage LP0212, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

80. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775696 (Lactococcus phage LP0509, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

81. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013796 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S44-C315, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

82. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF448557 (Lactococcus phage 37201, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

83. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_013155 (Lactococcus phage CB13, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

84. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN871505 (UNVERIFIED: Vibrio phage ValDsh2, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tgcttctttttcttgttctgtttgcttg	Protospacer
* .** ***************** **

85. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KP793102 (Lactococcus phage 936 group phage PhiA.16, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

86. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775701 (Lactococcus phage LP1110, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

87. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775693 (Lactococcus phage LP0209, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

88. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN693111 (Marine virus AFVG_25M354, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgttttttttgttctttttctaat	Protospacer
***********.******* ***.. .*

89. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_049402 (Lactococcus phage 38507, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

90. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775697 (Lactococcus phage LP0604, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

91. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775699 (Lactococcus phage LP1005, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

92. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MT442039 (Vibrio phage vB_ValS_X1, partial genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tgcttctttttcttgttctgtttgcttg	Protospacer
* .** ***************** **

93. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775700 (Lactococcus phage LP1011, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

94. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KP793103 (Lactococcus phage 936 group phage Phi19, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

95. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_049423 (Lactococcus phage LP0903, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

96. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_049401 (Lactococcus phage 38503, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

97. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KP793104 (Lactococcus phage 936 group phage PhiB1127, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

98. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KP793109 (Lactococcus phage 936 group phage PhiC0139, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

99. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_049414 (Lactococcus phage 96403, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

100. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013503 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S29-C22) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

101. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MK301439 (Lactococcus phage AV09, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

102. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775691 (Lactococcus phage LP0109, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

103. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MN871510 (UNVERIFIED: Vibrio phage valsw3, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tgcttctttttcttgttctgtttgcttg	Protospacer
* .** ***************** **

104. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KP793106 (Lactococcus phage 936 group phage PhiA1127, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

105. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013785 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S30-C161, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

106. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013789 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S33-C266, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

107. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

108. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

109. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MH925094 (UNVERIFIED: Vibrio phage VspSw_1, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tgcttctttttcttgttctgtttgcttg	Protospacer
* .** ***************** **

110. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to KY349816 (Streptococcus phage Str01, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

111. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_049369 (Lactococcus phage 936 group phage PhiLj, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

112. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

113. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_049482 (Lactococcus phage CHPC362, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

114. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775702 (Lactococcus phage LP1407, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

115. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to AP013784 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S27-C105, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
cagttgttcttcttgttcttttttcttt	Protospacer
.  *****.********** ****** *

116. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
attttgttttcctttttctgtttttagc	Protospacer
 *********.*** *********. *.

117. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to MF775695 (Lactococcus phage LP0304, complete genome) position: , mismatch: 6, identity: 0.786

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttttgtttttcttgctctttttagcat	Protospacer
***************.*** ***  ..*

118. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 7, identity: 0.75

tttttgtttttcttgttctgttttctgt	CRISPR spacer
aatttctttttctttttctgttttcaaa	Protospacer
  *** ******** ********** .

119. spacer 1.1|134814|28|NC_017354|CRISPRCasFinder matches to NZ_CP014848 (Bacillus thuringiensis strain HD12 plasmid pHD120017, complete sequence) position: , mismatch: 7, identity: 0.75

tttttgtttttcttgttctgttttctgt	CRISPR spacer
tttctgtttttcttgttttgtttgaatc	Protospacer
***.*************.*****    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

187217 : 195501

Streptococcus_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_154017352.1\|187217_187508_+	hypothetical protein	S0A2X1	Cellulophaga_phage	3.3e-15	56.0
WP_000870344.1\|187482_188829_+	McrB family protein	M1NSM1	Streptococcus_phage	1.0e-82	44.6
WP_000933366.1\|188821_190036_+	LlaJI family restriction endonuclease	Q6DMW8	Streptococcus_phage	1.9e-67	36.4
WP_000941818.1\|190113_191136_-	pseudaminic acid synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	6.9e-31	34.9
WP_000588210.1\|191139_191781_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-16	28.7
WP_001236937.1\|191780_193055_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_001106316.1\|193284_193986_+	CvpA family protein	NA	NA	NA	NA
WP_000492520.1\|193995_195501_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.6e-92	40.9

DBSCAN-SWA_2

750904 : 759143

Synechococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001047362.1\|750904_751426_-	inorganic diphosphatase	A0A1B1ISK6	uncultured_Mediterranean_phage	1.9e-37	46.4
WP_000606735.1\|751477_752164_-	glycosyltransferase family 25 protein	NA	NA	NA	NA
WP_000616971.1\|752160_752715_-	glycosyltransferase family 25 protein	A0A1D8KNF8	Synechococcus_phage	2.2e-07	25.2
WP_000626749.1\|752767_753766_-	glycosyltransferase family 25 protein	A0A1D8KNF8	Synechococcus_phage	1.0e-07	25.0
WP_000811214.1\|753790_754366_-	adenylate kinase	NA	NA	NA	NA
WP_001256330.1\|754382_756116_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	5.3e-15	22.4
WP_000251440.1\|756150_757092_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	2.1e-21	28.3
WP_000597598.1\|757169_759143_+	DNA ligase (NAD(+)) LigA	A0A0K2QQN8	Ralstonia_phage	1.1e-96	33.9

DBSCAN-SWA_3

1419263 : 1430228

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000391832.1\|1419263_1421933_-	DNA polymerase I	A0A142F1Q9	Bacillus_phage	1.5e-45	28.4
WP_079990950.1\|1421998_1423123_-	restriction endonuclease	A0A2H4J2Z3	uncultured_Caudovirales_phage	1.2e-23	50.4
WP_014533550.1\|1423172_1424204_+	DNA (cytosine-5-)-methyltransferase	F2Y148	Organic_Lake_phycodnavirus	2.5e-81	48.0
WP_001183570.1\|1424172_1424940_+	Eco47II family restriction endonuclease	NA	NA	NA	NA
WP_001147688.1\|1424900_1425308_-	hypothetical protein	A0A2H4JBT5	uncultured_Caudovirales_phage	1.2e-18	44.0
WP_001203570.1\|1425340_1425916_-	ComF family protein	NA	NA	NA	NA
WP_000289725.1\|1425903_1426479_-	dTMP kinase	Q2XUX0	environmental_halophage	1.7e-10	38.6
WP_001169261.1\|1426480_1426954_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.8e-27	44.2
WP_000780134.1\|1426953_1427517_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_000697662.1\|1427526_1428183_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_079990951.1\|1428179_1430228_-	DNA helicase UvrD	A7KV33	Bacillus_phage	4.8e-92	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017354

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection