CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013170	Cryptobacterium curtum DSM 15641, complete sequence	3 crisprs	csa3,DinG	0	0	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013170_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013170_1

290637-290723

Orphan

Consensus_repeat	Method
ATTATCGACAACGTGAGCTAGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013170_1

>merge|NC_013170|1|290637-290723|CRISPRCasFinder
ATTATCGACAACGTGAGCTAGTTGTTAGGCGCGAAGCTGCTGAAGATCTGCCATTCCCTAAGGCCTTATCGACAACGTGAGCTAGTT

>NC_013170|1|1|290637-290723|CRISPRCasFinder
ATTATCGACAACGTGAGCTAGTT	GTTAGGCGCGAAGCTGCTGAAGATCTGCCATTCCCTAAGGC
CTTATCGACAACGTGAGCTAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013170.1\|WP_012802651.1\|279746_280262_+\|hypothetical-protein	unknown	unknown	unknown
NC_013170.1\|WP_012802656.1\|292022_294863_+\|aconitate-hydratase	unknown	unknown	gnl\|CDD\|236445
NC_013170.1\|WP_012802663.1\|301865_302432_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NC_013170.1\|WP_143711841.1\|304684_305614_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NC_013170.1\|WP_012802653.1\|282877_284089_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_013170.1\|WP_012802652.1\|280286_282773_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_013170.1\|WP_012802661.1\|299270_301493_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|236436
NC_013170.1\|WP_012802643.1\|271736_272426_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013170.1\|WP_012802664.1\|302736_304512_+\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225153
NC_013170.1\|WP_012802658.1\|297452_297974_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NC_013170.1\|WP_012802648.1\|276735_277170_+\|ArgR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224355
NC_013170.1\|WP_012802655.1\|290920_292015_+\|isocitrate/isopropylmalate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223549
NC_013170.1\|WP_012802657.1\|294994_297088_+\|hypothetical-protein	unknown	unknown	unknown
NC_013170.1\|WP_174249824.1\|298058_298433_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NC_013170.1\|WP_012802660.1\|298573_299122_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|379137
NC_013170.1\|WP_012802644.1\|272555_273329_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
NC_013170.1\|WP_012802646.1\|275248_275677_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NC_013170.1\|WP_012802647.1\|276034_276427_+\|nitrous-oxide-stimulated-promoter-family-protein	unknown	unknown	gnl\|CDD\|371708
NC_013170.1\|WP_012802645.1\|273418_275086_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NC_013170.1\|WP_012802649.1\|277320_279453_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815

Protein	Function_ID	Function_description	E-value
NC_013170.1\|WP_012802656.1\|292022_294863_+\|aconitate-hydratase	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NC_013170.1\|WP_012802663.1\|301865_302432_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	9.65696e-26
NC_013170.1\|WP_012802653.1\|282877_284089_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_013170.1\|WP_012802647.1\|276034_276427_+\|nitrous-oxide-stimulated-promoter-family-protein	gnl\|CDD\|371708	pfam11756, YgbA_NO, Nitrous oxide-stimulated promoter. The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.	1.91261e-42
NC_013170.1\|WP_012802661.1\|299270_301493_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_013170.1\|WP_012802643.1\|271736_272426_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.27367e-89
NC_013170.1\|WP_012802664.1\|302736_304512_+\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	1.54198e-18
NC_013170.1\|WP_143711841.1\|304684_305614_+\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	7.35014e-29
NC_013170.1\|WP_012802648.1\|276735_277170_+\|ArgR-family-transcriptional-regulator	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	3.0674e-39
NC_013170.1\|WP_012802655.1\|290920_292015_+\|isocitrate/isopropylmalate-dehydrogenase-family-protein	gnl\|CDD\|223549	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism].	2.55989e-151
NC_013170.1\|WP_012802658.1\|297452_297974_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	4.11874e-64
NC_013170.1\|WP_174249824.1\|298058_298433_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	5.20133e-46
NC_013170.1\|WP_012802660.1\|298573_299122_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|379137	pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.	2.87993e-77
NC_013170.1\|WP_012802644.1\|272555_273329_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	6.0697e-85
NC_013170.1\|WP_012802646.1\|275248_275677_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	4.98663e-41
NC_013170.1\|WP_012802652.1\|280286_282773_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.17448e-99
NC_013170.1\|WP_012802645.1\|273418_275086_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NC_013170.1\|WP_012802649.1\|277320_279453_+\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	0

>NC_013170.1|WP_012802653.1|282877_284089_+|tyrosine--tRNA-ligase
MLPAEEQLRIIKSGTAQIVPEEALLEKLKRDRPLNIKLGVDPTAPDIHIGHAVPLRKLRTFQDLGHQVTLIIGDGTALIGDPSGRNSTRPQLTSDEVAANAQTYIDQAFKILDPQKTTLRHNAEWLLDLNLEGLLKIASNFTVARILERDDFHNRYTQNLPISVHEFLYPIMQAYDSVVIDADVELGGTDQLFNLLAGRELMEKMGKEPQVCLTLPLLEGTDGVRKMSKSYGNYIGLTDAADDMFGKVMSIPDELMVKYYRLASTESVDEIDRLEEGLAAGSLHPNQVKRALARNIVAAYHGDLAAIEAEVSFDRLFKNHDMPEDIPMFTGSLQPDEQGMVYLPKVLHEASLAKSAGEGRRLIDGGGVKVNGTPLAAKSYQIAAGDLEGAVIQVGKRRFVKLA
>NC_013170.1|WP_012802652.1|280286_282773_+|U32-family-peptidase
MNNAVELLAPAGNMTCLHAAVRSGADAVYLGIDRFNARRGADNFTMDTLAEACDYAHLRGVRVYLTANTVILPSEASAALEMVRQAYRRGVDAFIVQDIGLALEIHRTLPQAELHISTQMNIHNAAGIEAVHKLGAARVTLARELELAEIDHLSQVAHSFGMEVEVFAHGALCICYSGQCLMSSLVGGRSANRGMCAQACRLPYELHNRAQRKPLSSPGEHLLSPKDLCTIDLLPELVTCGVTSLKIEGRMKSPEYVSAVVGVYRAVLDRTLAWCAQRAASSSTTELFSASIPQEVRATANEQRILSEAFSRGFTTAYLTHDDGNDMMSFGRPNNRGIFIGRVSSAHDGAVVVEAERKLFVGDVVEFWTNRGHFAQPINRLEPVGKQGVRLEVSRKVGKGDRVFRVRSAQAAFADDALLPKVPLDIQVTVHEGQPLSVSLQSASGVRVQAQGAVVEQARTKALVADEVIEHVDRMGNEPFVLQSIEVDLGENVGVGFSQIHKVRATACEMMQEALLAPYHARKLTRITDRSQSSKSLVSGNTCEVVVWVTNASCARAAHKAHADAIFVPALNYQRGESLIAGQLSETVAQAGYPKQVGIALPAIDHDPLEGTRENRFAFDPWRYVKRGRTVLVDNMGQLDRALACGANVETGPHIPVLNAWTADGLVAAGAQRVWLSPELTLGQIQQIGEETQAPLGLVVSGATELMVTEHCLLMSQGPCNRNCTTCVRRKSPHYLKDRKGYEMPVITDCCGRSHIYNAVPLDIVHTLPDLIAAGVTAIMVDATLLTVDETTKAVSRAVRARDIALRGADTVAKVPGATTGHLFRGVS
>NC_013170.1|WP_012802651.1|279746_280262_+|hypothetical-protein
MKRSSTSSSAFTWGMTLVVVAALAFALAGCSLNRTAASDGDQASDNRQYMASLNQQMSDLQTEMDAFQKAVAAGDVVSMRAQQQAVDGTITAVKAADAPERLQSVKDNYVDALDTLDGALDGYVSLYSDVQRGAVSSDGYDQRLSAVQDAYNSGIEKVKAADAAVSEIASE
>NC_013170.1|WP_012802649.1|277320_279453_+|penicillin-binding-protein
MASRAMKKRHGTRNKRRSIPLLYILAVLFGLIIAGCVSGYALCQSWLQDLPEYQDASAYNLAQKTRVYASDGTTLLAEFYLENREPLTSLDDVSAFVKDGTIATEDARFYEHSGVDLWGIARATVMNLTGSSHEGASTLTQQFVRNTVLSKEASEQTLKRKVREAYISLKLEEAYSKDEILLMYLNTINYGSGAYGIEAAAQRYYSVNAKDLTLAQAALLVGIPQSPTYNNPITYPDNALQRRNTVLNRMLTRGRITQEQYQEAINEPLNLNPSEPTENGIAAYPYFTSYVRQVLLDKYSEAEVFKGGLTVTTTLDVKAQDAAEAAAKKKLSQVESDVEVAMVAVDPETGFIRALVGGRDYDESQYNLATQAQRQPGSSFKTFTLAAAIEEGVDPNSTYVNCSSTAKIGTWNVENYGKADYGTRSIASAFAVSSNTGFARLCDMITPEKVVDMAKRMGIESELEAVPSITLGSEGVTVREMAAAYATIASGGIQHDAVAIERITDANGNVVFQADTTGKRVMSGEVAHASEKVMESVITSGTGRQARLSSGQIAAGKTGTSQNWRDKWFCGITPQYAVACWEGVPEERQMSSYGSVTDMFSLFLNELITRNDIETFVMDNASMPAYRVLTAEEKAKLGTGSYNPNGISDSERKKSETLRNDHESGESTSDTNSSTDTQSTTSETEATTTVTPTLSGGSESTATTTTPTAG
>NC_013170.1|WP_012802648.1|276735_277170_+|ArgR-family-transcriptional-regulator
MKKRMQRHDIIREIVRDNEIRTQRELASKLQAKGHECTQATISRDITDMGLLKSSEGIYVLPEDMRLHHMVAELVEEVYTAGYLVVVRTFPGGAAGVAGSIDNAGLVGSLGTVAGDNTIMIAARTPEDAESIREILDGLRRHRS
>NC_013170.1|WP_012802647.1|276034_276427_+|nitrous-oxide-stimulated-promoter-family-protein
MKAEVKNIAPDSAISSDSLTERRSGEKATLIQMVGIYCAGQHHNEVAPVVINGYEARLCPSCRELVEYAFDRIDRCPHMETKTFCSACKTHCYQPQMRERIRQAMAYAGPRMLFVDPKGAIRHLLSRFER
>NC_013170.1|WP_012802646.1|275248_275677_-|peptidylprolyl-isomerase
MDNKGKKVKVHYIGTLDDGREFDSSVKRGEPIEFTCMAGQMIKGFDEAVKNMAQGETKKVRIPAAEAYGERDESLIQKVPTEQIPNAEKLPVGETIFMRGPGGQSFPVKVLSVEDGVATFDLNHEMAGKDLNFEITLVEVED
>NC_013170.1|WP_012802645.1|273418_275086_+|formate--tetrahydrofolate-ligase
MLTDIEIAQQASIRPISEVAAVIGVPEKYQEQYGKNKAKIDYNLLREVDTTPGKLVLVTAINPTPAGEGKTTTTVGLADAMNRIGKKTVVALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDFHAIGAANNLLAALLDAHIHNGNELGIDVRKITWKRAVDMNDRQLRHIVCGLGGKADGVPREDGFDITVASEIMAVFCLASSITDLKERLGRIVVGYTFDDAPVTAHDLHAEGALAALLKDALKPNLVQTLEGTPAFIHGGPFANIAHGCNSIMATRMALALGDYAITEAGFGADLGAEKFLDIKCRLTGIRPDAVVVVATVRALKSHGGTAPDALNTEDLVALEAGLPNLLQHVENITQVYGLPCVVAINAFPTDTPAELALIENKCRELGVNVALSEVWARGGAGGEELACEVVRLCEQPNDFTFAYELEGGIADKIEAIARRVYHADGVDIAPKAQKEIARLESLGFSSMPVCMAKTQYSFSDNASLKGAPRGFRITIREVRVSAGAGFIVALTGSIMTMPGLGKSPAAFKIDVDETGRITGLF
>NC_013170.1|WP_012802644.1|272555_273329_+|type-III-pantothenate-kinase
MLLTIDVGNTHTVLGTWHDDELTYRWRVRTDASQTADQARIMLNSLFALDGIVPRDVEGVILATVVPALNRLWSKVALDLCGRKALSIDSEMVGSLLNVSTYEGRIGADRIADAVAARAHYGDPVIVVDLGTATNIEVIDTQGRFCGGVIAPGVETSLNALISHTALLPAIEMTDPGTAIGSSTVQAIQVGMMYGEVDRIDGLIRRIWKQLGYQTAVVATGGFGRAIATLSQTVTAVDPDLTLRGLHAIYKAVSPLE
>NC_013170.1|WP_012802643.1|271736_272426_-|response-regulator-transcription-factor
MNEKPSRILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLPGMDGYELCRRLRSFTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSGQMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAWGWEYLTETKTVDTHIKRLRDKIAAAGYDPSVVETVRGYGYRFRQ
>NC_013170.1|WP_012802655.1|290920_292015_+|isocitrate/isopropylmalate-dehydrogenase-family-protein
MAQHTVTLIPGDGIGPEISEAMRAVVAASGADIAWEQAEAGLPAIEQYGTPLPASTIEAVRKNKVAIKGPVTTPVGTGFRSVNVALRKELKLYANVRPARTLPGLPNRFTDVDMVIVRENTEDLYVGIECEQGSPAAAHLARVIEQEGLGTIASDAGISVKPISVSASRDIVRYAFDYAVSQGRSKVTAVHKANIMKHSDGLFLRVAREVAREYEGRVAFEDRIVDAFCMNMVTNPSQFDIVVLPNLYGDIVSDLAAGLVGGLGIAPGANIGREEAVFEAVHGSAPDIAGQGKANPTALILSAAMMLDYLGEMDAAAAIREAIEAVFSEGRTLTADIRAMSQGGAVASTKEFTAAVVEKLQTRR
>NC_013170.1|WP_012802656.1|292022_294863_+|aconitate-hydratase
MSRRATDETRLAADADTWMSEGIPATLTVADKHYTYWPVSSVSHANRLPYSLRILMENILRCAPTNEARKQSAQRIIEAAAAHSVGEEVEFSPARVLFQDFTGVPVFVDFAVMREACKQLGGDPAQINPHVPCDLVIDHSVIADEFGCAGALNQNTALEFTRNRERYAFLKWAQRSFQNVRIVPPGQGICHQLNIERFATVATVRSADDNPVPATTTQVPESNPATARATESNLAPVAATQSTKSKDALLPSDSSLDPGVFFDTLVGTDSHTPTANGIGVLGWGVGGIEAEAAALGQPITILVPQVVGVRFTGSLSEGVSAMDLSLHMAALLRAEGVVGCFVECFGPGVAHLSATQRTCISNMTPEYGCTCTLFPVDDRTLDYLRVTGRSSDQVELVEAYAKAQGLWNSDAVRDYAKVLEVDLSQVERGIAGPSRPHEHIAWSEVPQTIARINEQRGLDKQCVTVELDGKAHQIGQGALAIAAITSCTTATDPAMMLACGLLARNAVHKQLHPKPWVKTILAPGSKATELLLERAGLVDSLRELGFYTCGFGCMSCIGNSGPILEPLHAIASQVELASVLSGNRNFEGRISPDVSQNYLSAPAGVVAYALAGRIDFDFEHEPLGQDSAGHDVFLCDIWPSDDEVAMLQKHIVNQALFNDGAQGLYEGDTSWRQLEAAESDLFSWDSTSTYVRRAPYFDGMQRTLEAPVPIRGARVLALLGDFITTDHISPAGSIAADSAAARLLREAGVASQDFNTYGARRGNHEVMMRGTFANVKLKNSLAEGRLGGWTRDHIDGQVKLIFDAAQHYRTEGIPTVVIAGKMYGSGSSRDWAAKGPALLGVRAVIAQSFERIHRSNLVGMGILPLQFEEGQSASSLGLTGTEVFDIAPIDFSAGMPNPAEVAVTAQRTNGEVVRFNALVRIDTPTEGAYFRSGGILAYVLRNLMDQ
>NC_013170.1|WP_012802657.1|294994_297088_+|hypothetical-protein
MDKKDMEEYFRMVGFEPPSGDSAGTAAESGGSAQSRQNTSQQSAQDAQAKTSRTSSARGRSAKRGRRIRWDEAKKAASRGDAPSFGGIPIDFSSIFGGGNGGNRGTGGSSSGTVNPDLSLPLFSRRSIVMLSIILLVVVAAAYWWFHPPINIHSADCWTFLVVFVIAPSFITFRVLSRSYTKGEGKRERDPKRARRYRVASFIPAAVAILGLIGAAASYSIWPGNAEKYSHLLEIQDSNFAQDIKEVDYDSIPVIDRDSAVLLGNRTLGEIPDYVSQFEIANTYSQINYQGRPVRTSPLNYADLFKWFYNKDSGIPAYVIVDMASQDTQVVRLDKPMYYSESEPLERNIDRYVQLKYPFYMFEEKSFEIDEDGTPWWVCPVQTRTIGLFGGETISRVVLVNASTGETYDYRIDECPEWVDRAYPSDLVVQQYNWYGSLKSGWLNSWLGQSGVVQTTPGTNGQAGYNYIVKDDDVWLYSGVTSATSDNAIVGFVLINQRTAETHFYSVAGATEDSAMASAEGQVQNLHYNATFPLLLNINGQPTYFMALKDGAGLVKKFAMIDIQRYQNVAIGDTVSQAQKSYKALLASNGVGSDDAETATTQSAQGVVHTTAQAVIEGNSHFYLTLQGDSRIFDAPLPAVTEVLRVAPGDTVTLHFTEGDPTCTVQSIEITGAPTSTDRAVSDQKTTDQGTSSEAVS
>NC_013170.1|WP_012802658.1|297452_297974_+|50S-ribosomal-protein-L10
MPNAQNKEALAKIKEELDGVSAVWVVDYRGLTVKDAQQLRREIREAGAHLVVYKNTLMHIALEESGLPTMEDILEGPNAFVFTEADPAAAAKAIKEFSEKNENLVIKGGIMDGAEYDAAQVVSIASLPSREELYASMAAALSSIARGLAVTINGVPQGLAQATRQVAEQKPAA
>NC_013170.1|WP_174249824.1|298058_298433_+|50S-ribosomal-protein-L7/L12
MTKEEIIEALKEMSLLEASELVKDIEETFGVSAAAPVAVAAVAGGADAGAAAEEKSEFDVVLEGFGDNKIAVIKVVRELTGLGLKEAKELVEGAPKAIKEGVAKEQADEMKGKLEEAGAAVTLK
>NC_013170.1|WP_012802660.1|298573_299122_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYYGNIKYNDIANGTGVRTTLFVSGCTHHCKGCFQTQTWCFSFGEPFTDEIARQIIDSLHDPWIDGLTLLGGEPMEPSNQEALLPFVKQVRDAVPEKTIWMYTGDIYEDLTDPASPRHTQYTDELLSLINVLVDGPFMQERKDITLRFRGSSNQRIIDLAATRATGKVVLWHDDPQYETHTM
>NC_013170.1|WP_012802661.1|299270_301493_-|anaerobic-ribonucleoside-triphosphate-reductase
MKVIKRNGSEVIFDVTKIVNAIAKANEEVVPENRLSQAQILTAANNVTTECEACGHAPAVEEIQDMVEDQIMALGCFEVARKYIIYRYLQNQKRASNTTDDKILSLIECNNEEVKQENSNKNPAVVSVQRDYMAGEVSKDLASRMLLPQDVVWAHENGLIHFHDSDYYAQRMHNCDLVNLEDMLQNGTVISGTLIEKPHSFSTACNIATQIIAQVASCQYGGQSISLAHLAPFVDISRQKIRRAVIAELNDLGLEATGDRLDTVVEARVRDEIRRGVQTIQYQVVTLMTTNGQAPFITVFMYLNEARNEQEKHDLAMCIEEMLRQRHQGVKNEAGVWITPAFPKLIYVLEDDNIEADSPYYYLTQMAAKCTARRLVPDYISEKKMKEYKLSAGEEAGNGDCYTCMGCRSFLTPDRSGNGYNNVANVANWDPTKPKYYGRFNQGVVTINLVDVALSSEGDINKFWEVFDERLELCHKALLCRHNRLKGTLSDAAPILWQYGALARLEKGETIDKLLYGGYSTISLGYAGLYECTKYMTGKSHTNPEATPFALEVMQHMNDKCNTWKEEHDIDFSLYGTPLESTTYKFSKCLQRRFGIIEGITDKGYITNSYHVHVAEEIDAFNKLKFESQFQPLSPGGAISYVEVPDMQDNLEAVMKVLHYIYDNIMYAELNTKSDYCQVCGFDGEITIIEDDGKLVWECPHCGNRDQTKLNVARRTCGYIGTQFWNQGRTQEIKDRVLHL
>NC_013170.1|WP_012802663.1|301865_302432_+|phosphatase-PAP2-family-protein
MDLAILHMIHTLSVVPLLNSVMVGFTSLGEYGAVWLALAVMLTLTKKYRAWGICLVAAVGLTWVLGDVVLKPLVARPRPFMVDSSIALIITPPSGFSFPSGHSGASFAAATIFFLSPARRLAKVAVAILAIIIAFSRLYLFVHNPTDVLAGALLGIVCACVVVVAYRRLNSMAESRGWRIPSFFDEQV
>NC_013170.1|WP_012802664.1|302736_304512_+|lipopolysaccharide-biosynthesis-protein
MPNTSDTSRSRRSVRAIRKAAQKRETTRSDDVQIDKTTRDASRGKTTRESSRKQRMIRSGKVRRSKTIQSKTSRSDDEQNGKYASDRFIGSAARYLNEERLANQASYGYFKSSREIEDEQGHRARRQPGRLRKLISDWGDRLLGAVSDKTFSGQEELYDGGRTKLDYVWNTAGLTTWGMVFPLLTIVVTQLSGVEAAGMFSFAFVAGTLLMILANYGARTFQVSDLKEAHSFRDYQINRWITCLLMLLVGWAFCTVRGYDGEMLLMTTCVFIYKMIDGLADVYEGRLQQKDKLYLAGVSQAVRSVAVFILFTLALLITRSIGVAAMVMAVVAVLSFLLVTLPLTLFETPRSGKLSLSGVADLFKQCFPMFIALFLYALVDNMPKFVMEGTLTYDNQLYFSALYFPAQAILLSVGFIYKPLLVRMAEAWVDPDRRSRFDLFIIAFIGIIVGITLFMEFMMSWIGIPIMSVLYGVDFEGFRNLATLMIAAGGITAGIDFLYQVVTVMRHQKSVTQIYLVTFVFSLFIPWMLIHVSGLSGAVIGYLIVMAMLFVMLLMDYVSVRLLYRRHPEDDPAYAELQAAVEARRRTSSRG
>NC_013170.1|WP_143711841.1|304684_305614_+|TatD-family-hydrolase
MHEVSPSAIERAARFDAHCHWAFTSNVQAVAQQAENDGLHVLSCTVSPMEYQQHTQQMDSFPQVRVGLGLHPWRFSDIQLTQPSGHQGQSVQQMQPSNQLDQPTNRLNRSVGEAQSASQLGQPLYQPAEQDEFLELFPSAYFIGEVGLDFGRAHAATRDEQVAFFSRAMREVAVQARRGVGHVVSIHAVAAAGAVMDAADVVCAQEGCCCILHWFSGTSSELTRAIRSGYYFSVGERMLATRRGRAYAQAIPADRLLLETDWPSKPEDPFEYVDYRARLVRAAQTLADLRGEDILNQIVATNARVLGAE

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Crispr_ID: NC_013170_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013170_2

862643-862744

Orphan

Consensus_repeat	Method
TTTCATCTATACTGCCTGCAGTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013170_2

>merge|NC_013170|2|862643-862744|CRISPRCasFinder
TTTCATCTATACTGCCTGCAGTATCGGTTGTCTTGTTCCGATTATCCGTACTATCAGCGGTTTTGTTTGCCTGATCACTTTCACCTATACTGCCTGCAGTAT

>NC_013170|2|2|862643-862744|CRISPRCasFinder
TTTCATCTATACTGCCTGCAGTAT	CGGTTGTCTTGTTCCGATTATCCGTACTATCAGCGGTTTTGTTTGCCTGATCAC
TTTCACCTATACTGCCTGCAGTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013170.1\|WP_012803139.1\|857251_858373_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|214643
NC_013170.1\|WP_012803152.1\|873666_875895_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_013170.1\|WP_012803154.1\|876555_877326_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NC_013170.1\|WP_174249826.1\|876049_876325_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_013170.1\|WP_012803149.1\|871237_872140_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NC_013170.1\|WP_012803142.1\|860901_861960_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NC_013170.1\|WP_012803141.1\|860190_860892_-\|regulatory-protein-RecX	unknown	unknown	gnl\|CDD\|234646
NC_013170.1\|WP_012803140.1\|858378_859956_-\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NC_013170.1\|WP_012803151.1\|872876_873644_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_013170.1\|WP_049754288.1\|866805_869283_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NC_013170.1\|WP_012803135.1\|853470_854109_+\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NC_013170.1\|WP_012803148.1\|869326_871222_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NC_013170.1\|WP_012803144.1\|863439_864873_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|223694
NC_013170.1\|WP_012803146.1\|865649_866798_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NC_013170.1\|WP_012803145.1\|864894_865392_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|377366
NC_013170.1\|WP_041225548.1\|854354_855302_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_013170.1\|WP_041225549.1\|856658_856976_-\|stage-V-sporulation-protein-S	unknown	unknown	gnl\|CDD\|377254
NC_013170.1\|WP_012803134.1\|852996_853362_-\|hypothetical-protein	unknown	unknown	unknown
NC_013170.1\|WP_012803133.1\|852464_852908_-\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
NC_013170.1\|WP_012803137.1\|855298_856645_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673

Protein	Function_ID	Function_description	E-value
NC_013170.1\|WP_012803139.1\|857251_858373_-\|ATP-binding-protein	gnl\|CDD\|214643	smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.	3.78318e-08
NC_013170.1\|WP_012803152.1\|873666_875895_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_013170.1\|WP_012803154.1\|876555_877326_-\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	2.22033e-32
NC_013170.1\|WP_174249826.1\|876049_876325_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.5509e-48
NC_013170.1\|WP_012803149.1\|871237_872140_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	2.04388e-132
NC_013170.1\|WP_012803142.1\|860901_861960_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NC_013170.1\|WP_012803141.1\|860190_860892_-\|regulatory-protein-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	1.99444e-22
NC_013170.1\|WP_012803140.1\|858378_859956_-\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NC_013170.1\|WP_012803151.1\|872876_873644_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.73889e-88
NC_013170.1\|WP_049754288.1\|866805_869283_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.62792e-149
NC_013170.1\|WP_012803135.1\|853470_854109_+\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	5.08752e-102
NC_013170.1\|WP_012803148.1\|869326_871222_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NC_013170.1\|WP_012803144.1\|863439_864873_-\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	2.32674e-130
NC_013170.1\|WP_012803146.1\|865649_866798_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	5.75485e-21
NC_013170.1\|WP_012803145.1\|864894_865392_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|377366	pfam04461, DUF520, Protein of unknown function (DUF520). Family of uncharacterized proteins.	2.31339e-74
NC_013170.1\|WP_041225548.1\|854354_855302_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	9.19151e-124
NC_013170.1\|WP_041225549.1\|856658_856976_-\|stage-V-sporulation-protein-S	gnl\|CDD\|377254	pfam04232, SpoVS, Stage V sporulation protein S (SpoVS). In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly.	1.06191e-39
NC_013170.1\|WP_012803133.1\|852464_852908_-\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	4.33781e-80
NC_013170.1\|WP_012803137.1\|855298_856645_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	4.29627e-177

>NC_013170.1|WP_012803142.1|860901_861960_-|recombinase-RecA
MAQSNEKEKMLKITTDQIEQRFGRGTIMKLGENDHSLEVGVIPTGALPLDAALGIGGVPRGRIIEIYGPESSGKTTLALHILAEAQALGGIAAFIDAEHALDPVYAARLGVDVDDLLISQPDTGEQALEICDMLVRSGAIDCVIIDSVAALVPRAEIEGEIGETTVGLQARLMSQALRKLAGSLSRSNTTCIFINQLREKIGIMFGNPETTTGGRALKFFSSVRIDVRRCDYVKLNGETIGNRVRAKVVKNKVAPPFRQAEFDLIYGEGISKTGCILDMAVECGIAKKSGAWYTYGEERLGQGREAAKHTLEEHPDLREEIEAKVREEYEIALPDQVASAEVTPVPKPTKKR
>NC_013170.1|WP_012803141.1|860190_860892_-|regulatory-protein-RecX
MDVNQFNSAFACFDPDEHCTRQRKNSSRRSNRRRSGSRRARYAHTANGSIRATRFSSSDQDNLDSNDTSPTQPTKPAFDRIVQLCTLRDRSCFELRERLKRDGYDTEDIEAALARCCACGLVNDIRFAESYIRAHVAQGKGSRTIAQFLAMQDIAVESLKGWPDAFGLSSEDQMKRAYQLLCTRPPHARDMRQAAWRKLISRGFPPDAAARAVRQWANEALYSESSNSVTSSN
>NC_013170.1|WP_012803140.1|858378_859956_-|ribonuclease-Y
MSEIILIVAIVIAIAAIVAVIVMRQSTQKSQHRSEEEARTLLEDARRQADALRREAEIEAKDEALKLRQSVELEKADRLKEVRAAEDRLNQREKSLDHRSDSLDAREHQLSSMQGQVEKRNRDLQESERELQQRRDNLDEEYEQVNRKLESVAGMTADEAKDELLNNLKDGLAHESAAIIRESEARTKAEADKTAREILSLAIQRVAADHAAEVTVSTIHIPSDELKGRIIGREGRNIRSFEQLTGTNLIIDDTPECVTISCFDPVRREIGRVTMENLVADGRIHPARIEEMFKKAEKLVDQRVQEAGEQAAFDTGMHDLHPELVHTLGRLRYRTSYGQNVLNHSLEVAYIAGVIASELGIDPITAKRAGLLHDIGKAVDHEVEGGHAVIGADLARRFGERPEIVHAIEAHHNDVEPNSVLDVIIQAADAVSAARPGARKETLDAYVKRLEKLEEIANAHKGVERTYAIQAGREVRVMVKPEEVDEAATTVLAHDIAQQIENEMQYPGQVKVVVIRESRAVDIAK
>NC_013170.1|WP_012803139.1|857251_858373_-|ATP-binding-protein
MSESDLSDFIEAVTGDTHLRVEDDLGCGFVRLRSAEAERRQAKHDIRGTEDIVIEMLRNARDAHAKLIFVAISRTESTRRITMIDDGDGVPDELQETIFEARVTSKLDSVHMDTWGIHGRGMALYAIKMNAAQAFVAASTLAGGSSFVVETDLGNLPEKRDQSAHPQFSFTESGTLTVRGPKNINRVIAEFAYLDRAACSVYAGSPIEIAATLWQYGRAVLSQNTIAFCSDAQTIAPAQRLACAAEPEEFAEIARTIGLELSSRSARRIMDGEVQPLLPVLDTISIERSDGVAPQKKTGSSHQRKPKITPATVLAAGDERHLRLSADDKSRFKEALLRAWAPLARAYYLDPNIGIDIKVKGDRIEASFPVILQ
>NC_013170.1|WP_041225549.1|856658_856976_-|stage-V-sporulation-protein-S
MEDSRQTGFLKVSSKSSPASVAGAIAGMVKDDVSVEIQSVGAGAVNQAVKAIAISRGFLSPIGIEIACIPSFADIVIDGEYRTAIKFTVLPLDNQAVQLSLDLTQ
>NC_013170.1|WP_012803137.1|855298_856645_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MFENTTFSITTFGCQMNKHDSERIAGLLESLGSIAVSSPAEADFSIFMTCCVREKADERLMGQVATMKNDAPRKGSPFGRRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESAIEKGSRRAEIIDGRAEFHDELPEDREHPWAAWLPITVGCNNFCTFCIVPYVRGREISRPLDEIADQARAYVQQGVKEITLLGQNVNSYGRDLYGSPRFDAVLDAVAASGIERIRFATSHPKDLTDGVIERFATLPNLMPALHLPAQSGSNRILAAMNRRYTIEHYEGLIEKLRVVRPYIALSTDIIVGFPGETEDDFEQTCELVKRVGYNQVFTFIYSRRDGTPAARLPDDTPRSVIQERFDRLVSIVREGALARNRLSLDRTMPVLIEGISKRNASMMAGKSPYNQTVHLPLPAGTSLQQWEGTIVTAHIEEARTWYLRGSMQS
>NC_013170.1|WP_041225548.1|854354_855302_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTQNTLASHRPHPLVICGPTASGKTDLAQAVAQAISGAVLSADSMQVYRGMDIGTGKLPPAERVVDHYGFDLVDPGEPFSAAIFQTYGRSIIDELAQENRPCVLCGGTGFYIRAVIDNYTFPAGEQVNNPIRDTYLALWQAEGSQALWQRLFVRDPDSARVIHPHDTKRVIRAFELLDQGTSYAYQRQKLATIDEFYTATHIGIAIDPDVLRQRIDQRVDTMIEAGLVDEVSGLLDAGFRSGITAPQAIGYKEIVAFLDGLCTLDEAIEKIKTATKQYAKRQRTWFRKDTRIHWIDGTNRAVSDILAQALAICTV
>NC_013170.1|WP_012803135.1|853470_854109_+|transcriptional-repressor-LexA
MNDLTKRQQQVLSCIEEFIEEKGYGPTVREVCNKLGLRSPSTVHVHLRALEEKGLINRDPLKSRSITLTGAAAESMGQPSALVDTPYNVVTLPLVGDVAAGEPILAEENITDHISLPTEIVGDAASFLLSVHGESMIEAGINDGDYLVVKEQPTAVNGEIVVALIDDGATVKRFYREADHIRLQPENSSMEPIIVRDCTIVGKVVALFRPIR
>NC_013170.1|WP_012803134.1|852996_853362_-|hypothetical-protein
MNGSQRDYRVMGSSALVAAHKAPTVSVIDFAQAQRTFAQAEQLYEPAISDILYSKVMRFIDTTQRLFYQAVDFVRTSDIAADIKKHDLSGYGYREKPSLFTNVGAAAVYVLIAAGALIAIL
>NC_013170.1|WP_012803133.1|852464_852908_-|transcriptional-repressor-NrdR
MRCPSCGNTDSKVVDSRPSEDGASIRRRRECLSCGRRFTTYERLGENPLIVLKSDGSSEVYHRDKILHGVYIACAKRHIAPEQVNDLVDDLEAELRNSNRTEIQSKELGDMVLARLADLDEVAYIRFASVYKDFKTVDEFAKALKGL
>NC_013170.1|WP_012803144.1|863439_864873_-|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MQEITAGTDTRSSQADKGVQGNLNAATAPNKSIHKDVWGTSRIPNACIITMGCAKNEVDSAKMRGQLQEGGWSVINDPTAADVIIVNTCSFIQAATEESLETIFEVADLKRVRSGQAKIVVAGCMPARYGDDLSDSLTEASRFVPCSKEDDILSVVDELIDRPKSSYAPGASSIPVVASSDPLYSAYVKISDGCDRFCSYCTIPFIRGRYHSFTFEVIEAEVTRCIDSGAREIVLIAQDTGRWGQDFDQPSTLACLMARLAELHPDTWFRVMYLQPEGVTDELLAAMASHDNICSYLDIPFQHADERLLTSMNRRGSRAGYQTLIEHVRSCVPGITLRTTMIAGYPGERDEDFEEMLEFIDEADLDYVGVFAYSQEEGTRAARLSDQVDEAIKQERAQRLRDVADAHSQMRVAKRIGSTMDVLVLGCEEDGRLIGRAQCQAPDVDGVVYLDHGQVGEIVQVDITDTFLYEMEGECHV
>NC_013170.1|WP_012803145.1|864894_865392_-|YajQ-family-cyclic-di-GMP-binding-protein
MAKESSFDIVSIIDLQEVDNAYGQAKKEITQRYDLKDSGSTIAFDKQTATLTITAPSDFVAGQVQDIITSKLSRRGIDLAAVKWGSSESASGGSVRRSGKLIEGIDRECAQAINKDIKAQKFKAKVQIEGDKLRISSASRDTLQEVIAFVKSNDYGQPLQFSNYR
>NC_013170.1|WP_012803146.1|865649_866798_-|helix-turn-helix-domain-containing-protein
MDEIGFGEILRQTRERKGLGLNATARRLRIRPDILRAIEDGNFAAMPPRGYTRNMVNGYARYLGLNPTEITGMFIEELYAYQASLSQQHRRSSGIDMPDDVESSRLSRRSSSRLSRTQGRTDHTSSRTGRSRSEGAASQTHRTRQNGSYVGGLTGADTYITQNSRSTRRFSDESSERGEGGFLSRIPFVASQYTGASSISSNTSARSIAPFIIGAAVLLLIVVLIWLFFFHGRGQSSNTAVETMPVTTVSQSQSSDTSSDSEAESNQTGTTSSESAPDHGTFEYTIAQGSSTYLEIYVDGTRQTAGDVNGPASGSYDFTDSLKLVCSERKAISVKINGEAVTLEENAKGIVNTTYRFSDILAEWEKTHSSGRATSTATSASS
>NC_013170.1|WP_049754288.1|866805_869283_-|DNA-translocase-FtsK
MAAPWIKEQGLARSAKGKAAARKNTRTASRQPRKAQSASRAARVGDVDHLLDEKSRRDIAGVICAVAGIVLFLAACLPSNGLVTEWLSNMLHIGLGIGAFLLPIVLLLIAAVLFIGRVGEKMSVRVALGLIILFFSLLTLFAVFTPNVASSSSDVLFQERHLIAQGGYAGALIAWVLLTLFGQQAAAVVAIGAILIALIVIGFSVNGLVEKVRSMRQQKVAEEQAENKNASANGMEPYQTRTRKVRRAANSAGATGQQKGEDAMPTARIVRGRASAASPTEPLSPLSRAAAAVGRSDTQALTRTLGKKKSASKSAGGQSTPARSAGAVPHPSEGFELPAASLLMRKDPRTSDGEGEETLRQTAQLLQDTLADFGVDVSVEGWAAGPTVTLFKVALPSGVRVSRVTGLTDDIALAMASQGVRIFSPVPGTNYVGIEVPNVNRRTVFLGDVLDVAGAGPLQVAIGEDVEGHPIVNDLAKMPHLLVAGTTGSGKSVAINGMIMSILMRATPAEVRFIMIDPKRVEFTPYNGIPHLYVPVVTECKEAASALSWAVAEMERRLKLFSKVGARNIAQYNSKAQNGMMIGDEAAEEIPYIVIVIDELADLMMNVGKEVEFSISRLAQLARAAGIHMIIATQRPSTNVVTGLIKANITNRMALTVASGIDSRVILDATGAENLIGNGDMLYGKPEYPKPQRLQGCFTSNKEIESVVDHLKAQGEPEYHQEILQTNVMSIGDTMPDGSGGRSSSDDPLIWDAAEIVVNSGFGSTSNIQRRLKVGYSRAGRIMDMLEEKGIVGPPNGSKPREVLVDTMELETLKAFEMNDEDSGE
>NC_013170.1|WP_012803148.1|869326_871222_-|ribonuclease-J
MSNNQESKSTTDSKRRAPSQSYKHAHIEHERPKLTQAEDSVKGSAKRRSSHRRQSSPSIREGAFSSRNEVSGILSPKKDPKAQLKVIPLGGLDAIGKNMTVFECGNDMILDDAGIMFPDDDHPGIDLILPDYTYVLENADKLRGIVITHGHEDHTGSLPYLMKDLDCEVPIYATKLTLGLIEGKFAEHKIKNAKLIEIKPGQRIKLGFFTCDFFSVNHSIPGAVGIFFQTPAANVLHTGDFKLDQTPIDGITTDFGALSRASEVGVDLMMSDSTNANVPAFTPSEAEVGKVLRDIIRHAKGRVIIASFASHIHRMQQICDAAVEAGRKVVVTGRSMVQNTDIARRLGYLDVRDSDIIDAYDLKGIPPEKVVVMCTGSQGEPLSALARIAAGEHKTISIEAGDTVIISATPVPGNEKAVTRVVNLLAKVGADVYDKNRARVHVSGHAGAEELKIMLSIVKPRAFMPVHGEAAHLRAHAQLGRAVGIDPDKIFILENGESLVLSGGNVREGDPVQSGIVFVDGLSVGDTSQDVLDERSALVEQGIATIACAIDRSSGSVRGSVQVQMRGITGGDDAYLAEDAATTVKRALEKVITDGSRKRRDYEKACRQALQSFMWESIKQRPMVIVNLIEL
>NC_013170.1|WP_012803149.1|871237_872140_-|4-hydroxy-tetrahydrodipicolinate-synthase
MSQSTQPLFGRLIPAMVTPFDDELHVDIAQTRALARRLVDGGCDSLLIFGTTGEGPTVCADAKIDVLGALVADQSLTVPIIANVGNNCTADTIAFARRAEEVGVDGLMAVVPYYNKPPQTGLFAHFSALANAVDLPIILYNIPGRCGINMEAETTLALAREHHNIVAVKEASGDLEQIAQIAADAPDYFTVYSGDDALTVDVMKCGGAGVISTIANVTPARMKKIVEYAAQGLWTEAVAENENLLPLMRGLFATSNPILVKEALNLSGFNVGGVRLPLLRATREESAALAQVMRSVGLSV
>NC_013170.1|WP_012803151.1|872876_873644_-|4-hydroxy-tetrahydrodipicolinate-reductase
MIHVAVSGCAGRMGATVVAAVLAADDMDLVCGIDPHQTPAAFPVYKSVPEALAAQDTIDVLIDFTEPSSVADNIRSCLAAHINCVVGTTGLTPADLEKLAEQVCDNTCLFYAPNFTIGAVLMMQFAEMAAKYFPEAEVIEFHHCHKKDAPSGTAMNTARRIAAARDHTSLAPGRETEVADGQGARGALVEGVPVHSVRSNGYSASQEVIFGSMGQTLTIRHDSWDRASYMPGVLLAVRAVIDREGLIIGLENLMA
>NC_013170.1|WP_012803152.1|873666_875895_-|polyribonucleotide-nucleotidyltransferase
MKKVVEEFELYGKSYRLETGELAKQATGAVLVTQGETTCLVTAVVSKEEKDYDFFPLTVDFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVADGQNPPDCICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTIAGTADYISMVEAGANEVSEEDMLAAMNFGQEAIAAFCDAQQRFLDQLDCTPLEYAIHTADPRIAERVNAHEAEMAAALRDADKLSRIAKVEALKAAVRESDFSDEERAAWASDIAAALKALEKRAMRVMIIETGERVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGTLREGQRLDTIDPSEGKRYMHQYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVLPSEDDFPYAIRVVSEILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDETVILSDIQGLEDFLGDMDFKVTGTARGITALQMDNKARGLSTEILGRALAQAKEGRAFILSAMLEQISEPRAELSEFAPRIETIKIPVEKIRDVIGTGGKVIRGLQDETGATIEVEEDGTVHIAAVEGPAGEAAKQAILDIIKEPEVGEIYDGEVVGIKDFGAFVKLTAGKDGLLHISRMANGRVGQVEDVLNLGDAVKVEVIEVGDNGKISLDRIDKPDAPQGSSRPRRDIDSRSDRGQHERRQSGRRPGDQGVQGDHRRSRSRKRD
>NC_013170.1|WP_174249826.1|876049_876325_-|30S-ribosomal-protein-S15
MSISKERTAELMREYGKNEHDSGSAEVQVAILTERIRNLTEHLKTHKKDNHSRRGLMMLIGKRRGLLRYIKNRDIEHYRDLIKRLGIRDNV
>NC_013170.1|WP_012803154.1|876555_877326_-|DNA-repair-protein-RecO
MGRPAQHERAIVLHRNRLRESDAIVDALIEDGSRISFVARGALKPSNPFAARLDLFGVCDVMLAPSRGLAIVSEARLAAAHAPLRSDIIRNAAAAPILDALRRCAHEDLPVPRLFPMTESILDHLSTCEEIVLCPLTAAYLLKLFALLGFRPSLDTCIDCGQSLLEDNPTDEVRFSYIDGGALCYDCAASHVHVALSLHTLNWAHALSLMTFDEVEQADCDIDTAFHVLHLCHSWLRGALGVNLKSMNFLLSCGLF

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Crispr_ID: NC_013170_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013170_3

888152-888247

Orphan

Consensus_repeat	Method
GCAGTTGCCCGCAGGCGTGCAGGAGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013170_3

>merge|NC_013170|3|888152-888247|CRISPRCasFinder
GCAGTTGCCCGCAGGCGTGCAGGAGATGGAAAATATATCGGTTACGCTGCCATAAGAACTCATCGCTGCAGCTTGCCCGCAGGCGTGCAGGAGATG

>NC_013170|3|3|888152-888247|CRISPRCasFinder
GCAGTTGCCCGCAGGCGTGCAGGAGATG	GAAAATATATCGGTTACGCTGCCATAAGAACTCATCGCTG
CAGCTTGCCCGCAGGCGTGCAGGAGATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013170.1\|WP_041225219.1\|894008_895268_-\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NC_013170.1\|WP_012803158.1\|879210_880440_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NC_013170.1\|WP_012803174.1\|896667_897396_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NC_013170.1\|WP_041225553.1\|884908_885886_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NC_013170.1\|WP_012803173.1\|896175_896484_-\|hypothetical-protein	unknown	unknown	unknown
NC_013170.1\|WP_012803175.1\|897389_898307_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_013170.1\|WP_169302064.1\|890356_892870_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NC_013170.1\|WP_012803172.1\|895606_896176_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NC_013170.1\|WP_012803156.1\|878290_878668_-\|diacylglycerol-kinase-family-protein	unknown	unknown	gnl\|CDD\|260134
NC_013170.1\|WP_041225554.1\|889383_890352_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|224383
NC_013170.1\|WP_012803162.1\|883805_884912_-\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|223708
NC_013170.1\|WP_012803161.1\|882413_883424_-\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_013170.1\|WP_012803157.1\|878664_879138_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|376735
NC_013170.1\|WP_012803160.1\|881226_882348_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|274090
NC_013170.1\|WP_012803165.1\|886118_887921_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_013170.1\|WP_012803166.1\|888585_889104_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|376586
NC_013170.1\|WP_143711809.1\|885912_886107_-\|hypothetical-protein	unknown	unknown	unknown
NC_013170.1\|WP_012803159.1\|880436_881219_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|367950
NC_013170.1\|WP_012803169.1\|892965_893733_-\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NC_013170.1\|WP_012803171.1\|895331_895592_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744

Protein	Function_ID	Function_description	E-value
NC_013170.1\|WP_041225219.1\|894008_895268_-\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	1.3741e-148
NC_013170.1\|WP_012803158.1\|879210_880440_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	2.69723e-126
NC_013170.1\|WP_012803174.1\|896667_897396_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	8.32968e-100
NC_013170.1\|WP_012803175.1\|897389_898307_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	8.57646e-161
NC_013170.1\|WP_169302064.1\|890356_892870_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	1.71536e-46
NC_013170.1\|WP_012803172.1\|895606_896176_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	1.04703e-110
NC_013170.1\|WP_012803156.1\|878290_878668_-\|diacylglycerol-kinase-family-protein	gnl\|CDD\|260134	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of undecaprenol to undecaprenyl phosphate. C55-isoprenyl (undecaprenyl) pyroposphate acts as a scaffold for the assembly of peptidoglycan components; undecaprenol kinase (UDPK) is involved in recycling undecaprenyl units for re-use in the peptidoglycan biosynthesis. UDPK does not participate in the de-novo biosynthesis of undecaprenyl phosphate. Gram-positive bacteria have a large pool of free undecaprenol, in contrast to gram-negative bacteria. UDPK may also play a role in a stress-induced pathway that affects the function of ribosomes. In Streptococcus mutans, UDPK has been shown to be required for biofilm formation, such as in the case of smooth surface dental caries. Members of the UDPK family have low activity as diacylglycerol kinases (DAGK), and many of them are annotated as DAGKs.	1.13293e-36
NC_013170.1\|WP_041225554.1\|889383_890352_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|224383	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair].	1.64635e-36
NC_013170.1\|WP_012803162.1\|883805_884912_-\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|223708	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].	5.73363e-105
NC_013170.1\|WP_012803161.1\|882413_883424_-\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	2.92971e-94
NC_013170.1\|WP_012803157.1\|878664_879138_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|376735	pfam02130, UPF0054, Uncharacterized protein family UPF0054.	5.74511e-45
NC_013170.1\|WP_012803160.1\|881226_882348_-\|molecular-chaperone-DnaJ	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	8.41759e-154
NC_013170.1\|WP_012803165.1\|886118_887921_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_013170.1\|WP_012803166.1\|888585_889104_+\|30S-ribosomal-protein-S20	gnl\|CDD\|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	9.56823e-21
NC_013170.1\|WP_041225553.1\|884908_885886_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	3.76138e-108
NC_013170.1\|WP_012803159.1\|880436_881219_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|367950	pfam04452, Methyltrans_RNA, RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.	1.02957e-56
NC_013170.1\|WP_012803169.1\|892965_893733_-\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.43386e-26
NC_013170.1\|WP_012803171.1\|895331_895592_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	3.96406e-10

>NC_013170.1|WP_012803165.1|886118_887921_-|elongation-factor-4
MTDPSHIRNFSIIAHIDHGKSTLSDRILEQTGTVAARDMRSQLLDNMDIERERGITIKSQAVRVSYTADDGETYQFNLIDTPGHVDFTYEVSRSLAACEGAVLVVDATQGVEAQTVANAMMAMNANLAVIPLINKIDLPAAEPERVKAEIEDGLAIPADDAVLASGKTGVGVHDLLEAIVYDIPAPTGDAHAPLRALIFDSYFDAYRGVVALVRIVDGQLTCGQHLRLLATDAEMIAEEVGARHPAEEPLECLSMGEVGYLVTGLKDIAQVKVGDTITATENTTVEPLPGYREAKPMVFTGLFPIDGDQYEPLKEALEKLSLNDPALIWEPETSHALGFGFRVGFLGLLHMEVVKERLEREFSLDLLATAPSVEYHVYKSSGEMVSLRSPQEMPDPGEIDHIEEPYLKAKILIPPDYVGAVMDLTVARRGEFITMNYLSPTTVEMVWEIPLSELIMDYFDKLKSNTRGYASLDYDFDGYKPSKLVRLDILLAGKPVDALSFIVQKDKAYDRGRVLTEKLKEIIPRQMFEVPIQAAVGGRVLSRQTVSAKRKDVLAKCYGGDISRKRKLLEKQKQGKKRMKGIGNVEVPQEAFMAILKVDE
>NC_013170.1|WP_143711809.1|885912_886107_-|hypothetical-protein
MADTQDDTERSWIDEAFDDRRPPTRRMAGSSKAAIGCGCFLAILLMVIIGVLGLMGALSLSKTV
>NC_013170.1|WP_041225553.1|884908_885886_-|tRNA-dihydrouridine-synthase-DusB
MATHPVMLAPMAGVTDPVMRKLCLEQGASLTFTEMVSAKGLSYENQRTEDLLTLSPDETQVGVQLFGHEPATMAHQAARVREMLGEALAVIDINMGCPARKIITKGDGSALMQQPDRAVHIVAAVVDAVDVPVTVKMRRGFALGCETAGDLARRVEQAGAAGVTVHGRFAQQLYRGTSCHATIRRVKEAVAIPVVGNGDVCCGADAVTLMRETACDAIMIARAAEGNPWVFADVAAALAGKPAPQPPSLRERVALARRHARELYRWEPRTLVRMRKQGSWYCKGQPGASQAREALNRCRSLAEFEAAFDEMDRRLDELEMREDAQ
>NC_013170.1|WP_012803162.1|883805_884912_-|radical-SAM-family-heme-chaperone-HemW
MNDPFKALYVHVPFCRAKCSYCDFASHVPGHNSEMDAYVEAVVLALRARGRDGLLSDIETVYFGGGTPTFLGPARLTQLLYALSLSMHLTDTVECTIEANPESLTRRMVRDLWALGANRLSLGVQSFDDTVLGILGRPHSADDARRAIDDAHDRFHNVSIDLICGIPGQTPGSFLSSVQEAIALGVSHISIYPLTIEEGTPFYSLYSKGLLAAIDEDEQADAMIDASRILKQAGFYRYEVASYARMGYECRHNCSYWTGVPYLGIGSGAVSMEQNDEGRWRSQDGYILERLDRYQREAEDLMLGMRLTKGISDIRLNEAAKLLPQAPNTFSSLVSLGLVEHTDGVWQSSEKGWLLGNELYGALLDLAP
>NC_013170.1|WP_012803161.1|882413_883424_-|heat-inducible-transcription-repressor-HrcA
MLSDRRQRVLAALIEEYISHALPVGSRTLVENYRLGVSSATVRNELSVLEDAGYIKQPHTSAGRIPTDFGYRAFVDDLLGSYVTEEDLDEDSRRAARALKDSALELDDLMDRTTSALARLTECLSIVLPPQTLSLSVRQITLVALSARRVMIVVVTEEGQVLDRQVECPCEVSPDEVHAVQETLNALIVDKQPDDIPHHIDEEQFPDHLTRLLIRETLRLVEEGSAGRAHQEGLKALVRQPEFAQAQALMPVLEVLEDDTILLRILHDVDSDGNTTVRIGSENGAASLAGVSVVAGRYGRGHSEGIVAVIGPTRMNYAQVIKAVRTAQSALGDTDA
>NC_013170.1|WP_012803160.1|881226_882348_-|molecular-chaperone-DnaJ
MSKDLYEVLGVEKTATDDEIKKAFRRRARQLHPDVNKADDAEEQFKELNEAYDVLSDPAKRAQYDRFGTIPGSAGGNAPYVDLDDLFGGFGSMGDIFSSFFGGGQGGVRMRREGRDMGVGLRLTLEEVAAGVKKEIVYDRLAPCPECGGSGLGPDGKETTCPDCHGQGRVVTVQRTFLGDMQTASTCPRCNGTGTIVTDPCPECEGQGRVPDRQRITVEVPVGIRDGQQLRLSGFGEAGMQGASAGDLIVTCRIVAHDYFKRDGDNLHTRVSISMVQAALGAEVEVDGIFEGEKVTVVIPEGCQSEQVVRTRGYGMPRFKSEARGDLFTHVNVVIPKKLSKRERELLEALAEEMGEGYTEERTPFQKIKDAFN
>NC_013170.1|WP_012803159.1|880436_881219_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MSLARFFLPSQVLACEQESPFILRLSAEDEHHARVLRLAAGEHVAVVDAAQDYFECEIVSFYAAGMCVRIAAHNSASVDRPQVCLLQGISKGDKVDVVIRHATELGVTQFVPLACERSVVKLDGDKAHKRVGRWRAIAKSAAMQSGQPRIPEVTLPYRCDEVAEILSDATCILICWEEAHGVGVSEAIAQALQLSGQTAAHARVALVIGPEGGLTQHEVDYFLHMGPPAYAVTLGSSILRTETAGIVAPALALSTLGVLQ
>NC_013170.1|WP_012803158.1|879210_880440_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MRYTIINLGCKVNRVESDTIAAQLEDRGAITDDRYPDVVVINTCTVTGEAEKKTRKTVRRALRDFMGARSVVVTGCAAALDPDEFLSMDERVVVCGKNQVADTCFEAVHEEPLIAEEVRRHLRFGGDFPTRVGLKIQDGCSAACTFCIVHVARGKAFSRPLPDVLREAHELYDAGVREVVLTGINLGTYTSNNANLAKVAQQLIDEMPKLRVRISSIEPLHATDELIEVLSRQEGRVCRHLHLPLQSGSSKVLHEMARPYSAEQFLSIVERIRTAVPEVSLSTDIIVGFPGETDQDFQATLDMVRACRFSKVHVFRYSKRAGTPAAARTDQIDSLVSANRSHILSELAREVRWQEATRRIGTSEDVLVESHGLGMSESYYPVSVDPAIPRGSLARMHLKSFDSHGTFQV
>NC_013170.1|WP_012803157.1|878664_879138_-|rRNA-maturation-RNase-YbeY
MDITINYDYGRERVEGMPLESLAQFIIAAEGKPASTEVSISFVDDDRIAELNEAYRGKVGPTDVLSFECDGYDDDFSVNNEADQVGEIPYELGDIVVAVDVAERQTALFGTTLAEEIELLVCHGLLHLCGYDHMVEEEAQVMEAREDELLAAWRNSL
>NC_013170.1|WP_012803156.1|878290_878668_-|diacylglycerol-kinase-family-protein
MKPDGTPTPFVSSFRYAARGIVQAYRLGLNIRVQTVVALVVVLAGVLCALSPVEWCLIVLCIGAVLAAECLNTALEQAIDLSCPHFDEQAGVAKDLAAGAVLALSIASCIIGLLVFVPHIISFFC
>NC_013170.1|WP_012803166.1|888585_889104_+|30S-ribosomal-protein-S20
MANIKSQKKRIRTNEKARLRNRAVKSELKTAIRVVKDAVAAGNGAAALAGAHHACKLLDRAASKGVIHKNQAANRKSGIMKLANTVVTDEIRAAYKAPEKRATEPKGGTKKAARRAERQKAYEEAAKVKEKNRKATKKAQAAAEARKAAEAAEAEKASEAEEAEESTEEAAE
>NC_013170.1|WP_041225554.1|889383_890352_-|DNA-polymerase-III-subunit-delta
MTSASTTPLLPAYLVTGTDDLKKEAVIRRLHERIAREGDLSFNRDEFDGAQAQGEAIVASCNTLPFASPVRLVEVFAADRLKGSDVAQVIEYLAAPNNQTVLCLVATGLAKNTRLYKAVAKLGAQAVIDCAPPTRRDLPKKVSALAASQGVSITQAAIGTLIDLVGENTVALNAEIRKLALAHWGSDAINENEVRALVSRTNEAKPWEFVDAFSSRNVERCLVIQAQLGDISAYRLLALCVTRIRELIMTKALVNRGQVQTLPDLLHLPAWRVKNHVTWARGFSVSELHRALESARDTELAMKSGANPEESFESWWLGVVCR
>NC_013170.1|WP_169302064.1|890356_892870_-|ComEC/Rec2-family-competence-protein
MYRAIACRVWVMHVLAECEPQVERSSMVNTSPLQNTPLRPALMPHVCAALGMWAAVGVSLWWLDTDPDISPILLMGESLGALVLFVPFVVRVRSHLLCAFLSLLIGTAAGLAISTVFILVLNEEADQIAHDGAQSHTFCALEDSHTGEFNSSVEALCVLESGSLERVSVIFDKNESLSCWEVFTAHGELRGEKPASRGRLTQQGLAGDVHAQTIERLGPAPFAALPYTARHACLSALSNQGGEGTLLLKALICADRSDLTGSSVYRAVRSCGLAHLVAVSGSHLAVFAGMVAAILARIRLAKGPRNMLVLALAGIYVVFAGVPISALRACAMSAVVLLSFASRRRASGLSAWAWCVGVLVILWPPNALSASFQLSAAATLGIILFGRYFAQWIGVLLFGHAQPIADVLGITIAASLATLPFSISVFGQFPLVSPLANVLATPLFALTCTIASILVPIAALIPPLSSVLGIPCFCAQALCDVAHLCAHIPCASIPVAFELPVLLCATLTVFGVLYVLWPTPSLPAAISAACLATGALVCILIVPPALHASELVLLDLEGDSAVLVRDGPSAVLIGTGSSGPRLLKALARHDVNHLDALVVTDASAHTRVLDAVCGGIGIDHVIAFGQGYTQTKEDTIAPNNKNTQINGLLLESSLPNSCGAGNGYCSIGHLRLTSMSDVTGISNSSDEHESENGQGISGVLFQLTADTNGDGTADVTALITDEHFKPTLERAHCLKSNGPIDVLVSLQPRVDSSRDERIAKEIHPRVIMEGLVRTNEAGSDLIGSSSTGDSRHMTAHATSRVDKQKKSDVLLYKTDTCGDVVCRLLPDTMYINADRVP
>NC_013170.1|WP_012803169.1|892965_893733_-|ComEA-family-DNA-binding-protein
MPFIATSERLTSRLHLSSASRPALAGVILLVLVALVLMVHNIVACAAHKALSEEIPQTQSSPSAAEAISSDDAVDSDEVDGANESRAHSAFDQKKVIVHVSGHVVNPGVYELSPTDRVEAAVEAAGGMSEDADANGLNLARVVQDGEQIYVPGLATDDTATNQSGASSSVPSTSTSSKSSSQSAGSAGSSRTQKVNINTADANELCSLPGVGQSTAQKIITYRQTEGRFATKEDLKQVSGIGEKKYAALADFITV
>NC_013170.1|WP_041225219.1|894008_895268_-|tRNA-4-thiouridine(8)-synthase-ThiI
MYQSLQGYTVEFQRICLVHYHEIGLKGHNRASFEMRLLRNLEALLHDQPIVTIHRISGRLLVFIEEGTTFETACAIEEAIAKVPGVARVSCGYKCERAIEEMSEAARQALVDVGDFQSFKVAARRNHTDFPIDSMQINQLVGAALCEAFPDKAVKMKDMDIQIGVEVIQSAAYVYARSIRGVGGLPVGSSGRVVALLSSGIDSPVALWRMARRGAVCIAVHFSGRPQTSATSEFLVDDIAHLLEHDGCIARVYVVPFGDYQREIALTVAPELRVIMYRRLMFKVAEAIANQEGARALVTGESLGQVASQTIDNIFATASAVNLPIFRPLIGTDKQEIIADAQRLGSFPISSQDAPDCCTLFMPRNPETHAKMDKVLAEEAKFPQDDWVKEIVAAAEVHDYTCPAYRPPRAAQSLHSDSM
>NC_013170.1|WP_012803171.1|895331_895592_-|DNA-directed-RNA-polymerase-subunit-omega
MSLIEPKIDQLLEETDNDRFLLCAIASRRAHDINDMLRGQRDRAIQLQTAVEIARASNKKPLSIAFDEISKGEVSWDPATIDAQAH
>NC_013170.1|WP_012803172.1|895606_896176_-|guanylate-kinase
MSRTGNLFVISGPSGAGKGTLVKRVLDRVPDAWVSISATTRAPRAGEVDGVSYFFLSDDQFDDLIAQDGFLEWASVHTARYGTPRASVEERLAAGVQVILEIDVQGAFQVKRYMPECHLVFIAPPSMEELRARLEGRGSETPEAIAERMATAEVELAQKKKYDYTVVNDNLDEATDQLVAYIESLAERE
>NC_013170.1|WP_012803173.1|896175_896484_-|hypothetical-protein
MAIPQLTPEERKAALEKAKAARIKRAEIRDDLKSGKLTLEKVLGMKDDPVVGRMKVSTLIETLPGYGKAKAEKVMAELHIAESRRLRGLGERQEASLLERLG
>NC_013170.1|WP_012803174.1|896667_897396_-|orotidine-5'-phosphate-decarboxylase
MLIPWQNAPARERIIVALDCEKDRALELADILAGHARWLKVGMTLFYALGPSIIHDLKERGFNIFLDLKFHDIPHQVFGAAASATHAGADMLTMHTLGGEEMMRAAVQGANKAAAEGGSEPPVMLGITVLTSMNQAALSSLNIALPIADQVQAMARLAYTAQAHGVVASPQEASALRVLLGPDAYIVTPGVRPRGSALDDQSRVADPASAIAQGASHLVIGRPITQASDPVAAFEEIVSSLE
>NC_013170.1|WP_012803175.1|897389_898307_-|dihydroorotate-dehydrogenase
MTAVNFAVNLGGLAMKNPVTVASGTYAAGREYHPFVSVDILGAVTTKGVSLSGWAGNDAPRIAETPSGMLNSIGLQNPGVAALRAGDLAWLAQYDVPVIVNVSGHSPQEYVQVIEALEEDDRVSAYEVNISCPNVDAGGMTFGTTCDGVETVVSGCRAVTNRPMIVKLSPNVTDIAEIARAAEAAGADAISLINTLLGMAIDADSRTPVLARVVGGLSGPAVKPVALRMVWEVSRAVSLPLLGMGGITNGTDAVEFMLAGATAVAVGTANFMNPFATQQVIDGIQAYCERQGVDDVNDLVGGLQC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

315653 : 358915

Streptococcus_phage(15.0%)

tail,portal,terminase,holin,integrase

attL 357941:357966|attR 358931:358956

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012802675.1\|315653_315905_-\|holin	phage holin	Q38613	Lactococcus_phage	5.8e-24	63.4
WP_012802676.1\|315901_316303_-	hypothetical protein	NA	NA	NA	NA
WP_012802677.1\|316312_317131_-	hypothetical protein	NA	NA	NA	NA
WP_012802678.1\|317127_317358_-	hypothetical protein	NA	NA	NA	NA
WP_012802679.1\|317376_318357_-	hypothetical protein	NA	NA	NA	NA
WP_012802680.1\|318347_319175_-	hypothetical protein	NA	NA	NA	NA
WP_012802681.1\|319167_322455_-\|tail	phage tail tape measure protein	J7KDT4	Streptococcus_phage	1.4e-77	41.4
WP_012802682.1\|322457_323063_-	hypothetical protein	NA	NA	NA	NA
WP_012802683.1\|323043_323469_-	hypothetical protein	NA	NA	NA	NA
WP_012802684.1\|323517_324213_-	Ig-like domain-containing protein	O03972	Lactobacillus_phage	1.3e-20	40.0
WP_012802685.1\|324215_324605_-	hypothetical protein	NA	NA	NA	NA
WP_012802686.1\|324601_324937_-	hypothetical protein	A0A2H4JD78	uncultured_Caudovirales_phage	8.1e-05	31.5
WP_012802687.1\|324933_325257_-	hypothetical protein	NA	NA	NA	NA
WP_012802688.1\|325253_325565_-	hypothetical protein	NA	NA	NA	NA
WP_012802689.1\|325564_326374_-	hypothetical protein	A0A1S5SA37	Streptococcus_phage	3.9e-13	27.5
WP_012802690.1\|326383_326893_-	hypothetical protein	NA	NA	NA	NA
WP_012802691.1\|327073_327412_-	VRR-NUC domain-containing protein	H7BUL6	unidentified_phage	5.3e-20	51.7
WP_012802692.1\|327572_327932_-	hypothetical protein	NA	NA	NA	NA
WP_012802693.1\|327939_328140_-	hypothetical protein	NA	NA	NA	NA
WP_012802694.1\|328130_329948_-	hypothetical protein	NA	NA	NA	NA
WP_012802695.1\|329951_331346_-\|portal	phage portal protein	A0A1Z1LZJ4	Bacillus_phage	2.3e-29	25.0
WP_012802696.1\|331348_332629_-\|terminase	terminase	B6CXD2	Clostridium_phage	2.8e-82	40.8
WP_012802697.1\|332621_333071_-	hypothetical protein	A0A1P8BLX2	Lactococcus_phage	8.0e-16	38.2
WP_012802698.1\|333057_334290_-	ParB N-terminal domain-containing protein	A0A2H4JBH5	uncultured_Caudovirales_phage	2.1e-21	49.1
WP_012802699.1\|334415_334799_-	hypothetical protein	NA	NA	NA	NA
WP_143711794.1\|334947_335451_-	hypothetical protein	NA	NA	NA	NA
WP_041225418.1\|336203_336488_-	hypothetical protein	G8IR46	Mycobacterium_virus	5.8e-12	45.0
WP_169302060.1\|336552_336723_-	hypothetical protein	NA	NA	NA	NA
WP_012802706.1\|337090_337447_-	hypothetical protein	NA	NA	NA	NA
WP_012802707.1\|337443_338010_-	ATP-binding protein	Q9MCM6	Streptococcus_virus	3.7e-10	31.3
WP_012802708.1\|337984_338665_-	hypothetical protein	A0A0F7L7L4	uncultured_marine_virus	3.4e-10	43.7
WP_012802709.1\|338657_338885_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012802710.1\|338894_339392_-	single-stranded DNA-binding protein	A0A1B1W281	Salmonella_phage	5.8e-15	39.4
WP_012802711.1\|339394_340069_-	phage recombination protein Bet	A0A141E1C2	Streptococcus_phage	9.2e-32	40.9
WP_012802712.1\|340053_340323_-	hypothetical protein	NA	NA	NA	NA
WP_012802713.1\|340323_341277_-	DUF1351 domain-containing protein	NA	NA	NA	NA
WP_012802715.1\|341852_342059_-	hypothetical protein	NA	NA	NA	NA
WP_012802716.1\|342067_342436_-	hypothetical protein	NA	NA	NA	NA
WP_012802717.1\|342447_342669_-	hypothetical protein	NA	NA	NA	NA
WP_169302075.1\|342968_343568_+	ABC transporter permease	NA	NA	NA	NA
WP_012802719.1\|343585_344125_+	hypothetical protein	NA	NA	NA	NA
WP_012802720.1\|344212_344776_+	hypothetical protein	NA	NA	NA	NA
WP_012802721.1\|344896_345889_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012802722.1\|345981_346290_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_012802723.1\|346330_347476_+\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	2.3e-19	25.4
WP_012802724.1\|347916_348600_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_012802725.1\|348796_349006_+	hypothetical protein	NA	NA	NA	NA
WP_012802726.1\|349011_349845_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_012802727.1\|349848_352419_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	8.2e-89	39.2
WP_143711843.1\|352489_353035_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012802729.1\|353044_354040_+	Fic family protein	D7RWK9	Brochothrix_phage	3.0e-07	30.8
WP_012802730.1\|354042_354591_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012802731.1\|354631_357865_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	6.0e-20	24.2
357941:357966	attL	NA	NA	NA	NA
WP_012802732.1\|357991_358915_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	3.6e-79	45.5
WP_012802732.1\|357991_358915_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	3.6e-79	45.5
358931:358956	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_013170.1|WP_012802672.1|313514_313715_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_013170.1|WP_012802672.1|313514_313715_+|hypothetical-protein

313514_313715_+

66 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|92	0.6538461538461539	0.803030303030303	0.8666666666666667

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013170

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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