CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013165	Slackia heliotrinireducens DSM 20476, complete sequence	5 crisprs	csa3,cas2,WYL,DinG	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013165_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013165_1

1383463-1383591

Orphan

Consensus_repeat	Method
CCGCGGGTTGAGCCGAGCGGGGGGCCGCAGGTTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013165_1

>merge|NC_013165|1|1383463-1383591|CRISPRCasFinder
CCGCGGGTTGAGCCGAGCGGGGGGCCGCAGGTTGGGAAGCTGGGGCTGCTGGAAGCGTGGGCGGTGTTGGTTGGGTCGCGGGGCGGCGGGGCCCCGCGGGTTGAGCCGAGCGGGGGCCGCAGGTTGGGT

>NC_013165|1|1|1383463-1383591|CRISPRCasFinder
CCGCGGGTTGAGCCGAGCGGGGGGCCGCAGGTTGGG	AAGCTGGGGCTGCTGGAAGCGTGGGCGGTGTTGGTTGGGTCGCGGGGCGGCGGGGCC
CCGCGGGTTGAGCCGAGCGGGGGCCGCAGGTTGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013165.1\|WP_012798332.1\|1381162_1382068_-\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|224513
NC_013165.1\|WP_012798335.1\|1383890_1388579_+\|Cna-B-type-domain-containing-protein	unknown	unknown	gnl\|CDD\|377553
NC_013165.1\|WP_050749537.1\|1391874_1392897_-\|acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|370148
NC_013165.1\|WP_144298189.1\|1388615_1390139_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_013165.1\|WP_012798344.1\|1396423_1397533_-\|Ldh-family-oxidoreductase	unknown	unknown	gnl\|CDD\|376860
NC_013165.1\|WP_012798326.1\|1373639_1374212_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NC_013165.1\|WP_012798325.1\|1373314_1373623_+\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012798333.1\|1382680_1383346_+\|rubrerythrin	unknown	unknown	gnl\|CDD\|153100
NC_013165.1\|WP_012798342.1\|1394181_1394982_-\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012798330.1\|1378786_1379569_-\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012798331.1\|1379804_1380707_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NC_013165.1\|WP_012798328.1\|1374582_1375845_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NC_013165.1\|WP_083762250.1\|1390119_1390902_+\|response-regulator	unknown	unknown	gnl\|CDD\|226456
NC_013165.1\|WP_012798327.1\|1374213_1374474_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NC_013165.1\|WP_012798329.1\|1376635_1378372_+\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|227588
NC_013165.1\|WP_126513883.1\|1394988_1395474_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_013165.1\|WP_012798340.1\|1393039_1393285_-\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012798341.1\|1393268_1394168_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213231
NC_013165.1\|WP_012798338.1\|1391077_1391773_+\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|235453
NC_013165.1\|WP_012798324.1\|1372378_1373089_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695

Protein	Function_ID	Function_description	E-value
NC_013165.1\|WP_012798332.1\|1381162_1382068_-\|NAD(+)/NADH-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.77919e-34
NC_013165.1\|WP_012798335.1\|1383890_1388579_+\|Cna-B-type-domain-containing-protein	gnl\|CDD\|377553	pfam05738, Cna_B, Cna protein B-type domain. This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure.	1.15199e-30
NC_013165.1\|WP_050749537.1\|1391874_1392897_-\|acyl-CoA-thioester-hydrolase	gnl\|CDD\|370148	pfam08840, BAAT_C, BAAT / Acyl-CoA thioester hydrolase C terminal. This catalytic domain is found at the C terminal of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases (BAAT).	3.44506e-11
NC_013165.1\|WP_144298189.1\|1388615_1390139_+\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	5.47985e-35
NC_013165.1\|WP_012798344.1\|1396423_1397533_-\|Ldh-family-oxidoreductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	3.3343e-143
NC_013165.1\|WP_012798329.1\|1376635_1378372_+\|leucine-rich-repeat-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	5.24901e-22
NC_013165.1\|WP_012798333.1\|1382680_1383346_+\|rubrerythrin	gnl\|CDD\|153100	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.	1.16268e-54
NC_013165.1\|WP_083762250.1\|1390119_1390902_+\|response-regulator	gnl\|CDD\|226456	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].	1.39387e-34
NC_013165.1\|WP_012798331.1\|1379804_1380707_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.24797e-54
NC_013165.1\|WP_012798328.1\|1374582_1375845_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	2.50414e-159
NC_013165.1\|WP_012798327.1\|1374213_1374474_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	4.96927e-07
NC_013165.1\|WP_012798326.1\|1373639_1374212_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	7.03211e-109
NC_013165.1\|WP_126513883.1\|1394988_1395474_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	3.84774e-24
NC_013165.1\|WP_012798341.1\|1393268_1394168_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.60916e-105
NC_013165.1\|WP_012798338.1\|1391077_1391773_+\|aquaporin-family-protein	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.96129e-53
NC_013165.1\|WP_012798324.1\|1372378_1373089_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.75367e-104

>NC_013165.1|WP_012798333.1|1382680_1383346_+|rubrerythrin
MAKYKCKICGKIFEVADGETPVCPLCGATGDNLELIEDAPAEATNKYAGTQTEKNLQTAFAGESQARNKYTYFASVAQGEGYEQIAAMFLKTADNERAHAQMWFTELGGIGDTAANLKAAADGENYEWTDMYDGFAKTAEEEGFPELAAKFRLVAAIEKHHEERYRALLKNVETAQVFSKSEVKVWECRNCGHIVVGTKAPEVCAACGYSKSFFEVHAENY
>NC_013165.1|WP_012798332.1|1381162_1382068_-|NAD(+)/NADH-kinase
MRILVINNISSGHNEGTIYDFVRAFNRDGDEVVMRTTDGHTRIEHMLDDAESFDLVVASGGDGTVTTVLHRLRNTDTPVLPFPAGTANLLTLNLEQPTETHALAQLARNGQTLDFDLAELETSAGTFGFSIMSGIGYDASIMQMAEAGKEVFGELAYFLAAGANLEPQHADIKLDIDGKVINTDGIGVIFVNFSKIQFDLSLTHNNQPRDGKLDVVVLKAKYAVELLPVVFAAMRDRDGSYPGRTDAMEIYSGRQIKVVTDPPLSLEYDGEPLDVTSPVTARILPGAACIVVDDDTRALFS
>NC_013165.1|WP_012798331.1|1379804_1380707_+|TerC-family-protein
MDLSIFTTPEAWISLVTLIFLEIILGVDNIVFIVITTDRLPVNKQHIGRKLGLAGAFIMRSLFLCFASFLVHLVDPLFSIDLGFYAHGFSIRDLVLFAGGVYLIYKGVSEMRSMFTLNDLVPGEVADPDNLTRKISLPQAIATIMVMDIVFSIDSVITAVGMANHLIIMILAVMLAIILMMVFIDTISKFINSNPAIKLLALSFIVMIGILLTLDGLGINSGIEVLDMHMEKLMVYFAMVFSIFTTMLGISYRRKAVGYLKEEHPELMYVPADDDSDEDGGQLHIKDVKPEQAAVSGGTQ
>NC_013165.1|WP_012798330.1|1378786_1379569_-|hypothetical-protein
MPNHTQFHTLAPAEEGQTVRYMDGSALLKDFKIPIYVKIFALIVAVVALFMGGKVFLQASDYILHHSEHVAEEIQGNLTREASLELPDVAAFTAMDDETFKASLDEAGIPYIDYSTEQEGLKIVKLPSDADAAEAKEIMDSGINTMDAVTASFYLPGYYQLTRSVTEEGTDIRLRFVDLNSQDQESAVGSTKDALGWTDNENVTVDEEGVDSVGNNYQTGTLYTDAGTFTWTISSCPMSSIYDISGMPENASYVGLHITD
>NC_013165.1|WP_012798329.1|1376635_1378372_+|leucine-rich-repeat-protein
MLRTSVIPPWKNALARQEVKSAPWRAMLAMLACMVAIACAVCSAQPREAYAAWEQRTDPTINEYIKSGLNSDGTVDAFVEIDFDDVGYANSNSGLADAYDHRALYVQFCYRSAVSSQDPEYSQEYEAGFCPYYYIPESLLGGTFWIEIEDYSYSRTYVSEPITVNPSGDDGGNLRWSFSPASRTLTISGVGDMTEFEGETPWMGMYHDTDAVVIEDGVTSIGDYAFYGFEGLRLVDVPKSVTSIGTRAFWLCGHDLVIRGYAGTEAAHFAHDSGRLFDCVDGDLGAMTIDLTAGGVTYDYSSAKKAAPNSTFYSLSWTDLNGDELIDWRPSDTGDDDDGYDLDKDGNVDVTESWKDARYVTFKKAPACSLEGSVTYKLTPERRYLAASLNPEGYFHSELTVVLSYKQGWNKVDGSWYYMTDAKGTKAKGWKAIGGRWYFFDKSSGAMRTGWLKDGGTYYYLAPAKTSAGDPQGAMLKGWQKVGGKWYYLGTDGKMVTGWKTIGGKQYCFKPSGAMAAGEWYGGWWLSGSGAWTYPYKGSWKQSSKGWWFGDTSGWYAKNQTLKINDKNYTFNSAGYMV
>NC_013165.1|WP_012798328.1|1374582_1375845_+|tRNA-4-thiouridine(8)-synthase-ThiI
MTSYQRICLVHYHELGLKGRNRNTFERHLMRNVEALLEHEPVEKVTRISGRVLVLLSAQADLQAGQRAVNILRKVPGVARVSCGYRCEREMDQINDAAHKALSEVDGFYTWKVVARRNHTDFPIDSMELNRLVGAYLCDRFPEKKVQMKGADVEVHVEVVQGYAYVYALTIPGIGGLPIGTAGKVVCLLSSGIDSPVATWRMARRGATCIGVHFSGRPQTQSTSEYLVDDIAHVFEEFGGIARIFTVPFGDHQRKIAALVPPALRIIIYRRFMMRVAERIARDEGAKALVTGESLGQVASQTLDNINCTNAVVKMPVLRPLIGSDKLEIIADAKKIGTYDISSSPAPDCCTLFMPRSPETHAKLADVEAAEAELPVDEWVSELMSKVELREYRCPSSYDSNHHGRAEAKAAVDDNVTKLN
>NC_013165.1|WP_012798327.1|1374213_1374474_+|DNA-directed-RNA-polymerase-subunit-omega
MTIIEPSIDSLLAQTDNDSFLLCAIASKRAHDINDMMRGQRERAIQLSSAVEIAKATDKKALSMAFEEVSRGEVSYDPATIDAKVH
>NC_013165.1|WP_012798326.1|1373639_1374212_+|guanylate-kinase
MRKGNLFIISGPSGAGKGTLVNLAMHRVGDAWLSVSATTRKPRKGEVDGQHYFFVSNDEFDAMVEQDRLLEWAQVHANRYGTPRETVEQHIAAGNQVILEIDVQGALQVREKMPSAKLVFIEPPSMDVLESRLRGRGTEAEDVIALRMKNAETELALKNEYDISFINDDLDECADALVAYIEQSAEEKDE
>NC_013165.1|WP_012798325.1|1373314_1373623_+|hypothetical-protein
MAIPQLSAEDRKAALEKAKAARTKRAEIREELKAGKLSLKEVLDMKDDPVIGRMKVSTLIETLPGYGEAKTAKIMDELKIAESRRLKGLGARQEAALLERLA
>NC_013165.1|WP_012798324.1|1372378_1373089_+|orotidine-5'-phosphate-decarboxylase
MLTVFDSVPRSDRIIVALDCDRAEALSLAKQLQGKAKWMKVGMTLYYAEGPNIVEILGLLGYKVFLDLKFHDIPHQVAGAAESAVLAGADMITMHAIGGMQMMEAAQRAVDESGSDAATLAITVLTSMDEEQLHQTGVNRTIPEQVQALATRASDAGLSGVVASPQEAGMLRRLLGPDAYIVTPGVRPAGADRGDQSRVATPKEAFDAGASHIVIGRPITQAEDPVAAFEAIAAQL
>NC_013165.1|WP_012798335.1|1383890_1388579_+|Cna-B-type-domain-containing-protein
MDVSKRTLNIVSILMSFLLVLNCFGATGIAFAEDGDVDAVGAAEEQTVAALADGEAESAEEPQVEASDPAVGEDPATEQEPSAQTEGFETVQAPRAQEATDTAAAEAVEPQPDQEVQPLAEPETEAEATRANAGDVRSQTSTDLENFLVNVTIDAPTDDNGAYIIKPNSTYEIEMRFAENEDLQFDDDAVLTYDFPAGMAVADAAATTFSIAVTDSTGTATVEGNTFEIVDGQLRVRFNQSDPNFDKLSATSNVKFDINVASTFEQVEGQLEFAPSIIKDFVFDTTADVTIDKSVVYDADSDTARYTLRIASTGTNENVVIEDRLTGTALVFNQDVSVVSSVAGALSVTPDYGSVPNGFRVEIPSMVDGEELTLTYTAAVDNTKITANGTVAQTNNTATVDTDQIPDPKSDSADFSGQVKFNRIDKEPAGKPVQIGEGLYEQTWTITVNGDHKMPMGGTYISDWIVQNSRPFMQFTGDGISVAVTMENGTTETRNVTWDDLRLYTSEYGTYGWGYLTPASDGKASYVITCKTIINTEGALGDLTLRNGAQVYSAYDEASVTMEGIGEGTFDIDKTAEGTTAEQTDWKITVTVPGSGLPDLRVVDDLPRLTYEGQEYVDTYIEDSMTVEGLLEGESWSLYVGTEKKSYTLTIYQDEAQTQPGARPTANGEPRDIVVRFKTAVNQDWLSLATADGYNSSTLRTHTNVANARSGSYRTDNAQASVVPLKPDFEKGFLERTESQVDGVTYPAFTYKLQLLGVYEDGAAIQDSFDTTYLKYDEASGIVVRGGMSSGATNLVTGGSATATPNAEGMQINVASFPKQANGNFYPYYEIEYTLMVKDEAALAALNEAAASAQGGVYLDNTATWNDLTSDESVNYTYFPYVDKELTQRPSSDNGYVAEFKVLINQYAEDLDPTSETLTILDELSPNLRFLPDSLTITPANDSIGVQHDSATNTLTFTNVPDNTAYEITYQARVLGAGNVSYSNTIKFGKYEKTVEETTTVSHSGGGTASNPSITLVKRDAEDQTATLAGATFELYYMRGDVRVPVTDSNGNAVSFTTDGAGQVLIAGNQQSLGWTLWTDRTYCLVETAAPAGYEINAEPVYFVLTETPTSQMDFDIVGDTLNVNNERIKTQVAVTKEWKGPAVSSARVNLLANGEIVDSATLDDANDWTYVFEGLDAYDRDGIEIAYTVEEEPGDAFRLISIEGNATEGFTVTNLNADTVNVPVQKEWVGPAAESVTMNLLADGTIADSVVLDEAGGWSHTFEGLPKYDASDGHEIVYTVEEDSLEGYSSEISGDAETGFVVTNTNDAVTEINGTKTWDDADNQDGVRPDSITVRLLADGVEAQVLTVTADDDWAWSFPNLRVYDAEDGHEIIYAVTEDTVPGYSTSYDGFDIVNTHEPGKTSLTVTKAWDDKSDKDGIRPDSVTIRLFADGADTGQTLVLSAENGWTGSFENLDEMKSGAKISYTVEEESVPGYTASITGDAETGFVVTNSHDPKDDTPKDSVTKSKSKPKPANPAPKSKPSVPKTGDGTLPVILLAGGLAVAAIAALIIALRAKRKKKA
>NC_013165.1|WP_144298189.1|1388615_1390139_+|histidine-kinase
MAQGNTEPIPYEVLANAMAEVYEAIYDIDPETGAYDMYYMSDSYRGLNLAKSGPDFFKALPEGVKRVVAPDDFSYVVYMLSRETLLPSVADGKKHTLVYRIRKNDRLVYHQLRAVLVETDGRQHLLMGVRDIDDVMRQMLRRDEELYSERQRSENYLGAILGTAAAYIDANLTKDLLAAHSSNKDAYGKGVLEQVPDMEKITCYTKFQNWVSEHLVCGNVDAYKRISSREYLLDCYNRGCRRAAVSFSIAAEGKDPVPCRALYYLYREKATDDIRLLCVMYDRTEQQRTEEKMDEMRTALRMSRIRNSASQMKPHFLYNALGSIQEVMVEDPSRAASLLDDFTVHLRSCIRAMDNDEPIPFETELEYVRAYTHIEAMRLGDRLKMNYELEETAFSILPLSVQPLVENAIRHGVYRRGKQGGTVTLRTRSEGGFWVVEVEDDGIGFDVDGYERAVMYGGSDSTGIKNIRFRLEKIMGAQLEVASVPDKGTLATVRIPKEGAGFESYFG
>NC_013165.1|WP_083762250.1|1390119_1390902_+|response-regulator
MRAILVDDERLMLRRFMRLAEGIDDLKVIGSFDDPFDALDFAEENDVDVAFLDIEMPEMDGIELARRLRAIRHDMLIVPVTAYESYIHESNRIGADYFIVKPYTEQVLKTAMEKLRLLAMKQDKDVRIQMFGRFLVKKNGQPVPLTGKAKEILALIVTRRGKEISNEEIYTTIWEGRPCDNASMSVYYNALKRLRVALDQAGLSGLLVSTRRGQTVDTSLFDCDFYDWKDKTADSRSKFEGEFLPEYTWSEYLIGEVMTF
>NC_013165.1|WP_012798338.1|1391077_1391773_+|aquaporin-family-protein
MRKYVSECIGTFVLVFLGCGTAMLVGTSPDGGYLLTALAFGLAIVAMAYSIGNVSGCHVNPAVSLAVFVRGDMSGKDLAGYIIAQVIGAFLGACLLWLLFLIGGVTDMTGGLGANGLAGVGGRASVGLAVEIVLTFVFVMAVLGATSSKYDHKPVAGLVIGLSLVLVHILGIGLTGTSVNPARSLGPAVMAFITGNAEPLSSVWVFIVAPLIGGLCAALLYDAIEGRKHEE
>NC_013165.1|WP_050749537.1|1391874_1392897_-|acyl-CoA-thioester-hydrolase
MESTGKVLKMIIKIVITVIVVIAVAGIAITVLNRFNSSTYTIMQGSSMDGSTRYETNEQVIYIEGDYMKGYRFSPVERTHPGTVVVYGGSEGSPNYWQAKMIADQGYEVLALYFWGQDGQAPTLANVPLEQFDEVEAYIQKNVEQPTPITVIGTSKGAEFSAELAAHGFAIDNLVNFAPADHTYFGLDYTSRDELPSFTYRGEPVPFASQRTIGIGTSAKLMWDMMTGYPPSYRATYESAAEDSGELGRIDLSSFEGNALFFAGAADAMWQSEVAAENLAAQSERFEAYIYPDAGHVFTDDVDRLGTGWEIMFGGTAEGSAAAFEDSTDILFDHLAAWHG
>NC_013165.1|WP_012798340.1|1393039_1393285_-|hypothetical-protein
MATLIRYELKKILGNRPGMVACVLVLLMLVFANVLNLAMIQTRDIATGERIRGAAAVEADSSLAAVCIPLSASVFSKHQVS
>NC_013165.1|WP_012798341.1|1393268_1394168_-|ABC-transporter-ATP-binding-protein
MKLILDRITKSYSGKTAVNGVSATLVPGVTGLLGANGAGKTTLLRIICDILQPTGGRVLYDGEDIRELGPAYRSLLGYLPQDFGYYPSFTALDFMCYMGALKGFDKREAREAGAKLLEEVGLGDDVHRKVKTFSGGMKQRLGIAQAMLGNPAILVLDEPTAGLDPKERVRFRNLIAGFAQDRIVLLSTHIVNDIEFAANRILVMNEGMLIMDGAPEHVVAQAAGKVWECTVDAQQAEEMTEQMPVANVRYAPDGHAVVRVVTDTSPMEGAVAVDPTLEDLYLYVFRTDGNQGVPNGNAD
>NC_013165.1|WP_012798342.1|1394181_1394982_-|hypothetical-protein
MEESNTARMKISIRKCFDDQKPETAYEHMDVLALMMVEEDKWAREDARRQRGFAWFVRSQVRYIPAWVWLTLAAVVVLVFVASRYSDTASGMPWALGMMASICVLACMPSLCSSRTYRLDELEQSCQNNAANVLMARLLILGCASVFCLTLLIAAACTWTNIGLLSAVLWTCPPFFLCTAGSLVLLRSLRPEDAPPACVALTALFCTALLAMAKMFPLAYGQAALAVWAFAFAVSFIWMVAETIALIRRTAEGFGTLPHRRTSATS
>NC_013165.1|WP_126513883.1|1394988_1395474_-|sigma-70-family-RNA-polymerase-sigma-factor
MALPLRKQSNLDYEQARHIVEECYDSILAYCTRHAPAGYEAADLAQETFLRFVRTRSYQDRGRPIAYLMTIARNVCIDAGRKNRLQTVPLDFEPADPEDEFCADVRKALESLPDEPRELLEMRYGFGLQVNEIARMFDESRYATRRKIKKALELLHEELKG
>NC_013165.1|WP_012798344.1|1396423_1397533_-|Ldh-family-oxidoreductase
METRPYIPWDMLNSFMIDVFKAYGVPEEDAAICADVLIESDRRGIESHGCNRFKPIYLDRIKNGTLLPVTKIDIVKETPTTVVMDANNGMGMVASYRMMEMLVEKARTYGMAGGTVFNSTHYGIAGYWTGMAERAGMIGITGTNARPSVAPTWGVEPMMGTNPLTFTMPTDEEFPFNFDCATSTVQNGKIEYYERIGKPTPAGLVVTPDGGTMTDSGQILRDMRQGQCALTPLGGLGEDTGGYKGYGFTTIVEILSAALAGGPYMKELSGKNPDGSNKMYRLGHFFFVINPEFFMGLDTFRETAGGICRELRASQKAPGAERIYTAGEKEWDAWQERKDKGCPVGESVQKELLYLRDTCNLDYRFPFED

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Crispr_ID: NC_013165_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013165_2

1655743-1655827

Orphan

Consensus_repeat	Method
GCCGTTGGCGTCGAAACGGTACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013165_2

>merge|NC_013165|2|1655743-1655827|CRISPRCasFinder
GCCTTCGGTGTTGAAATAGTACCAGGTGCCGTCAAGACTCTTCCAGCCGATGGCTGCGGCACCGTTGGCGTTGAAGTAATACCGC

>NC_013165|2|2|1655743-1655827|CRISPRCasFinder
GCCTTCGGTGTTGAAATAGTACCA	GGTGCCGTCAAGACTCTTCCAGCCGATGGCTGCGGC
ACCGTTGGCGTTGAAGTAATACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013165.1\|WP_169304512.1\|1651047_1653348_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173810
NC_013165.1\|WP_012798578.1\|1670065_1671124_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NC_013165.1\|WP_012798559.1\|1639224_1642098_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NC_013165.1\|WP_012798573.1\|1663574_1664090_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NC_013165.1\|WP_012798567.1\|1653645_1655244_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NC_013165.1\|WP_012798564.1\|1648160_1649054_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
NC_013165.1\|WP_012798558.1\|1638104_1639238_-\|dTDP-4-amino-4,6-dideoxygalactose-transaminase	unknown	unknown	gnl\|CDD\|183283
NC_013165.1\|WP_012798560.1\|1642090_1644892_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NC_013165.1\|WP_012798569.1\|1657803_1659342_+\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NC_013165.1\|WP_126513771.1\|1664032_1664938_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_013165.1\|WP_012798562.1\|1645965_1646868_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_013165.1\|WP_012798571.1\|1660678_1662301_+\|LicD-family-protein	unknown	unknown	gnl\|CDD\|368225
NC_013165.1\|WP_012798561.1\|1644895_1645966_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NC_013165.1\|WP_012798576.1\|1666875_1668684_-\|LicD-family-protein	unknown	unknown	gnl\|CDD\|368225
NC_013165.1\|WP_012798577.1\|1668731_1670066_-\|class-II-D-tagatose-bisphosphate-aldolase,-non-catalytic-subunit	unknown	unknown	gnl\|CDD\|377955
NC_013165.1\|WP_012798572.1\|1662310_1663495_+\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|224799
NC_013165.1\|WP_012798563.1\|1646899_1648171_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|237195
NC_013165.1\|WP_050749551.1\|1665013_1666861_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|227588
NC_013165.1\|WP_050749550.1\|1659425_1660676_+\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012798565.1\|1649189_1650986_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013165.1\|WP_169304512.1\|1651047_1653348_-\|S8-family-serine-peptidase	gnl\|CDD\|173810	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	1.42698e-44
NC_013165.1\|WP_012798578.1\|1670065_1671124_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	6.96046e-155
NC_013165.1\|WP_012798559.1\|1639224_1642098_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	1.16482e-71
NC_013165.1\|WP_012798573.1\|1663574_1664090_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	2.15728e-08
NC_013165.1\|WP_012798567.1\|1653645_1655244_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.97834e-34
NC_013165.1\|WP_012798564.1\|1648160_1649054_-\|glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	5.26691e-44
NC_013165.1\|WP_012798558.1\|1638104_1639238_-\|dTDP-4-amino-4,6-dideoxygalactose-transaminase	gnl\|CDD\|183283	PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional.	0
NC_013165.1\|WP_012798560.1\|1642090_1644892_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	8.83471e-51
NC_013165.1\|WP_012798569.1\|1657803_1659342_+\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.28083e-33
NC_013165.1\|WP_126513771.1\|1664032_1664938_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.4085e-28
NC_013165.1\|WP_012798562.1\|1645965_1646868_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	6.99234e-178
NC_013165.1\|WP_012798571.1\|1660678_1662301_+\|LicD-family-protein	gnl\|CDD\|368225	pfam04991, LicD, LicD family. The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent. These proteins are part of the nucleotidyltransferase superfamily.	6.58331e-27
NC_013165.1\|WP_012798561.1\|1644895_1645966_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_013165.1\|WP_012798576.1\|1666875_1668684_-\|LicD-family-protein	gnl\|CDD\|368225	pfam04991, LicD, LicD family. The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent. These proteins are part of the nucleotidyltransferase superfamily.	6.71992e-43
NC_013165.1\|WP_012798577.1\|1668731_1670066_-\|class-II-D-tagatose-bisphosphate-aldolase,-non-catalytic-subunit	gnl\|CDD\|377955	pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase. Proteins in this family are tagatose 6 phosphate kinases.	0
NC_013165.1\|WP_012798572.1\|1662310_1663495_+\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|224799	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane].	1.63114e-59
NC_013165.1\|WP_012798563.1\|1646899_1648171_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|237195	PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional.	7.6145e-19
NC_013165.1\|WP_050749551.1\|1665013_1666861_-\|C40-family-peptidase	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	9.88453e-36

>NC_013165.1|WP_012798567.1|1653645_1655244_-|L,D-transpeptidase-family-protein
MYVKQQNANVALRLALASLLATVAVAFVCGMTSVQAFADEVAADGQTDLAAEATLDEAAEPAEGTLETEAGMVGEDAEGVVADIENAEDADAVQEPEVEAPAEAAVEEDGSEDTVQTLTDPEEEELTPGWHDTEDGTGKFYVLEDKTKAKGWQDIDGKRYYFDTETAIMKTGWLDDAGTWYYLDTKTGIMKTGWVKSGSKWYFMSDPDGAMKTGWVKDKGLWYYMDSPSGVMQKGLISVNGKTYYMNGSGAMQTGWKKVDGSWYHFDSKSGAASTGWVHDGSDYYFMNGDGTMKTGWMKEGTTWYYFKGSGRMAYDQWIQDGSDWYHFAASGAMQKGWKQIKGSWYYFRDSGRMVNSQWLKVKNDWYYFYSSGAMASNTYVGNYYVNANGKWVKDTNLAKANSLYSATNWVVIIDTHKNWIYIYKGPNGNRYLYDYWRVSTGAAATPTVKGEFTVGSKGYSFGNQYYQCYYYTQFFNDYLMHSILYYSRPSADDVKDGRMGMNISHGCVRMPIERAKWIQNNIPYGTKVYIY
>NC_013165.1|WP_169304512.1|1651047_1653348_-|S8-family-serine-peptidase
MQVVDEGDSNESDVYEPLADPAVTKGTDSVVEASDEPGLPDSEIEDFEQLLVGGSGESGTVADVPTDAYDGYIVSVDEERLADFQFAMELEAAVDAGVLTPVAGNFYTCNDYRSLPGTIHADMVESIEPDYYVEAFDDGSDEGIVPDVRPVLESESGLDQAPETASDTEVMGDAVTSDTHEADASDESSEPDTDESADVSEAAKSEAQPESEETDETSEEPVETQAIKGYNDPRISEQWYLTSTNASAAWAAGYTGAVSESAKGVRPLVAIVDTGLCGTGSSSVKHEDINYGNVVAGWNVVAGSYDTAPVSRHGTMCAGIIGAEQNNGKGIAGLVPDAAMAPVMIFGDSGSTSVSNLIAGIYAGVDYTGANVMNLSVGVSEMYFENHSISPLQAAVDYAASKNVLMVAAVGNYGTGSNPLMYPAGFSNVVGVGGVSQGSLDHYPSSEFNDSVYCVAPGQNILSTAIANKSAYSAGSGTSYAAPMVSALAAMCKSVDGSMTVSEFKKFIRSTSTDLGASGYDIYYGYGVINFNAAAKQLNAMGGHVSREGWVLEDGGQYYYVNDSPVCNAWKRIDGYWYYFKSDGRAAASEWEKVGSYWYHFDSSGHMQKNRWLKSGGGWYYLGSNGAALTGWQKLSYGGSSKWFYFNGDCKMLTGLQTIRYGGSDKVFYFDGSGVMVTGWQKAGGHWYYFGGDGAGVTGWQKLAYGSSTRWYYFNGDATMATGWKKIRYAGADTWFYFGGDGAMRTGTQTIGGKTYRFASNGAWIG
>NC_013165.1|WP_012798565.1|1649189_1650986_-|hypothetical-protein
MSINGVITRLQPKCAAMEAAVDRFAASPVRRFLFAALFGLFLFALGCLTNKYYGPNDDWTMGVLLSGHYDVGGNCLFIGSTLAHLVYWLNTHIVGLNWFLIAERFMALVAFVLFVYIALGSTRLGAAAIGLCFIEFFLFSGVSHASNFSYVSGLVTAAGWLTLLATFRGDKVPVWAQVTAVLLCVFGLEWRYEVFFISLPFIGLTALIIFVDIWTSGFALEGKEWVRRLLPTVVALVLCGCAYAYTTAQWELDGWQDWREYNHWRSNISDFLMPEYDEAEDQLQALGVSKNDYVLADSWVTADPEYFTSEKLEDIVSVGHGTLRTPLDTAKWFASTLLIHDRTFFLGILAVTIGGLLMANGKRGRRMVYGLIGMMALVAIVLVFIGRFPNRVEHTVWLFVVIGIMLASREGGRTTSEKEAKAQARAMVVSGASGVVWVLATLFVVAHLVPAFNPAKIDTFVMSDEPVMEKASLQFASDPDVIRIWDVKAYTRIEQGFEYRYIPSKDFLESNQFLGGWTINSPMSNSSLENIGIDNTIKSLVEDDRTVLVTHNPDIADGVLLHLQEHYYPNATMQVVDEVNIGNDKAYWVSVYDYSAND
>NC_013165.1|WP_012798564.1|1648160_1649054_-|glycosyltransferase
MIGKVVALTRAELTGAGYDYEFVLVNDGSTDGTFDVIRSLHEEDPKIIGVNLAKNFGQHNAIMAGLGRTTGDYVMLMDDDMQTHPSQCLKLVREMENGWDVVFAEFPEQHEAWWRRMGSAFTMWTMRTLQHRPKGVESSNFFVMRDYIAKEAAKYEGPYVYVQGILFRITHNMTNVPVEHFDRESGVSGYNLKSLVRLWSIVLNFSMAPLRAAAIVGAALGSIGLIGAIALIIRRLLDPTVAMGWSSLMVTMLVCSGAIIMFLGLIGEYLGRLFMTMNKAPQYVVKEVLDDKADHDE
>NC_013165.1|WP_012798563.1|1646899_1648171_-|ATP-grasp-domain-containing-protein
MTNNETQHRLMVLGSAQEFIELVRRAQARGIYVISCDGYPNGLAKAIADASFNIDVRDTQAIAKLCQEQRVDGIIASFSDLLAECLVNIADAAGLPCYAKPDRFAYVRDKTLMKGMFDELGIPHAKSVQVHKDTLEDDLSGITFPCVTKPVDSYGSRGVYVLDTAEEVRECFDEVEAYSNRGYIIVEEYVQGDEINAMTWVCDGKATVIGLADREKSVELAHAIPHVSRIIQPSKHLRAVQDDVCAMAEKIAAYIGIETGPLSMQFFYDEKRGITVCEAAGRLFGYEHELVQNAYGFSIEELLIDYVYDREAMKERLSGLQLEGRRHSAGLYFHAHEGDIAKILGMPSEDIGEVTLDESLSYYAEGERALRGAGAMPYAARIYITADTRKALDVVTADLYRDVKFLNGEGENLLFGNQLPAGH
>NC_013165.1|WP_012798562.1|1645965_1646868_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPLTRVTSKQLLPIYDKPMIYYPLSTLMLGGIREILIISTPDDLPRFEALLGDGSQFGLELSYAVQERPEGLAQAFIIGEDFINGEPCALILGDNIFYGNGISRHLMQAVADAESGKGATVFGYWVDDPERYGIVEFDENNNAVSLEEKPEHPKSNYAVTGLYFYDSRVCEFAKQVKPSERGELEITTLNQMYLADGTLNVVTLGRGYAWLDTGTMDSLYEASEFVRTIEKSQGLAISVPEEIAYIMGWIGREQVVEAAEKYGKSNYGHHLKRVAQNRIFMSKEGD
>NC_013165.1|WP_012798561.1|1644895_1645966_-|dTDP-glucose-4,6-dehydratase
MAKTYLVTGGAGFIGSNFVLYMLKKYDDIRIVNVDKLTYAGNLENLKSVEDDPRYAFRQVDICDREAVKAVFDEFDVDYVVNFAAESHVDRSIANPQAFVETNVDGTVNMLQCAKEAWLTGDDTYKDGVKYLQVSTDEVYGTLSLDRPDEFFVETRPLDPHSPYSASKASADFFVKAFGDTYKLPYNITRCSNNYGPYQFPEKLIPLMLNNCLQHRDLPVYGDGMQVRDWLYVEDHCKAIDMVINDGVLGEVYNVGGHNERSNIFIVETIIDYVKNNVDPEVGEQLIKHVTDRKGHDRRYGIDPEKIKRDLGWYPETKFEDGIKKTIAWYLDNQDWVANVVSGEYMNYYRNMYSER
>NC_013165.1|WP_012798560.1|1642090_1644892_-|YfhO-family-protein
MADIHRRPNRILYYGLLWCACLLGLALTSIVLMRHGLTHVWANDSVPQDINFFIYTGEWIRAFLAGLVTGEFTAPMFTYNLGYGTDVFWSVMGFWNDPFNLLSVIWPPQHAEIAYELLLYARIGLCATFFVWYAKSKGHGPWACFVGALVYAFSGYVIFQAIMHHASFVNVALVFPLVLLGADRLFEGKSPIMYILALAFSLYTTFYFTYMVALALIVYCIAKYVFEREQKSLSDLAKLVAQFIGYALLGLCIAGVSVLPGLSVVLSMSRVGLERSIPLLYDGGRYWSFATDLIGGSSYVGGLCIGAVGAFCLIVFLVGRKRIDRNTWRIVLVALIVSLVIVCVPKLGSVTNGFAYVSDRWLFVFDFVAAYATVCAVPVVKGLSKQEWGRVCLVSGILLVLSGSYGFVYESRWALIMCVGFVLVVAASVALATRIPDGAYAFCLAAAVLVGAGATGCLYTVAWGGNHLGEFNSSGVSVPQLDDAAVGKASDLESQGLWRLSPVDRKGPRNASLYHDVMAIDFFGSYYNQNVDTFRSALGVADKDSCYIFAGNDGRTALEYLTGSKYVIVADGTDWRVPYGYEDTGIDAAEGYSFYVTTHAAPLAFMYDNSLSLEAFNQLNLAQRQEAMLSACVLEGGDVQDGRSMDLTSEALPYRIEDADGIEFRDGMIYASKDKASFDLVLPEGTQVPAGSFETEVCFTGLQYAPDPQDMAERLAVDEPLKNKIKRLCSNQNNEYTEIYVYTDDRETYLCLYDNFNKQYSGRENWAFNLGTSEEAPETITVWLSKKGFYTYDTLDVLAQPGEPLAEKAQALQAVAASRLELGENRIDARFEVSDEAVHYAFVSVPYSKGWSAIVDGKPAEILQANVGFMALRLQGEGVHDVQLTYRTPLLLEGLACTIAGIAVTVVIGILFARKRARSAYDEQRTKLAGLSE
>NC_013165.1|WP_012798559.1|1639224_1642098_-|YfhO-family-protein
MNRSKLTYYVALFFFITFAFAAFVLYMRYFHGRTVLWKTDALPLYLNFFIYEGEWLREGFASLASGQGWAFPAYSFDMGYGADMFVAMNGMVSDPLNLVSAICPSRYAAHMLVLLILVRLLLASAAFSEYCFSKGLSRSQTFIGSICYATSGYVLFWGVLRHPGFLNVAILFPLLLMGIDRVFDRKPAYLLVASAALLFGFSLYHSYMVCLVLVAYCLLKFCIEEDAKSLRAFGSFFVRVAGPLVLAGLIAAVLWLPVLLTMTQMGRIGLERVIPVIDDFGYYLYLPLSWVGGCAAPRGAYIGPLPLVILLTVVLAGRNRLADKTWKFITAAFILCLVAMLVPAFGSAFNGFGYVTDRWMFAFGFLTSYSVAAGIPLIGKLRRKDYVGVAAVCLLLCAIFAAGAYGWKNPWAKQGAVCFVVVCVLVGCIVACTRIKRGGNHAAHAGLSQRAVVVMLMVPLLVGTASMLEGMFSSNKGDYVSEYMALDEPWTEMHHENVGRLVSNLDGMNSGGVSIDNDLRGLGDSQENPSRVSTPVIYGMKNATVAHGVMSDNFYSSFYNQYVDDFRTELGVSDHFLNYSFTGVDSRFALLSLTGSRYFIASDYGAWRTPLTYRPVDTGSLVFEGDTRYTVSETPYALPLVVGFDEAASEDTYRSLDMVQRQELLLHACVLNDCEADPTLKDFAGESHDVDFDIGLDDGIVMTDGEFTVSDNGLPVQFTFQGKPNCEYYLVIEGLDFEGISPTEYAEMKGESVTWETRWKEWVWEAPSEGLILVGSQGNTRELRIANATSSAYGGKHDWVFMGAVSGDEPASEITLTFDAWGRYTFDSIRIVEQPVEPLVDQAEHVLSLSNPTIVLGNDAVWAKLDSCQECKYALVTVPYSEGWSATVNGEPAEVLRADTAFMAVALPGDEHCDVELHYVTPGLKAGALISIIGVTLAVVLTIRRRKTRRRIEHDSV
>NC_013165.1|WP_012798558.1|1638104_1639238_-|dTDP-4-amino-4,6-dideoxygalactose-transaminase
MIPFNRPPYVGNEMDYVREAAEVNRKICGDGPFTKKCHAWMQERFHAQKALLTTSGTTALEMAALLCEIEPGDEVILPSYTFSTTATAFVLAGAKLVFVDIRPDTMNIDETKIEAAITDKTRVIVPVHYAGVACDMDAIMDIARRHNLLVVEDAAQGVMSTYKGKALGTIGDFGCYSFHETKNYSMGEGGALVINDERFNERAEIIREKGTNRSRFLRGQVDKYTWVEYGSSYLPSDMNAAYLLAQLERADEINDSRIHAWNRYNENLADLAADGSIELPFIPEGCGHNAHMFYIKCKDLEERTSLISYLGDRDIMSVFHYVPLHSSPAGLRYGRTAADMSVTDRESNRLTRLPMYYGLTDEDVDRVCDAVHGFYAQ
>NC_013165.1|WP_012798569.1|1657803_1659342_+|cell-wall-binding-protein
MHISFTTHKGTRAFAGLLTAACLTSMLLLSGAAYADDTVSPDAGLNATEQSTPDGNTAVTGDTESNGTGESEAVDASDEAPDAESGANDGNAADGDSDSQDGNPAPDDQGGQGADSTDDPGTEPDPPVDPDPVDPDPEEDPTPPDGWFEDNAGWHYRQNGKLKTGWLVYKNKYYLLNSKGVMLTGWQQRSGSWYHFNGSGAMETGWKKLSWDSKKAWYYLGGNGKMRTGWLKYDGHWYYLGKDGAMRTGWLKDDGYWFYLGRNGAVRTGWQSIDYNGAKTWFRFDGGGRMYTGWTKSGGFWYYLGGNGAMRTGWQAVGGEWYYLSDNGKMDTGWLKYKGSWYYLLSNGMMVSDTWLRIGGVYYYFKPHGDVPSVNYPTEGSLTSKQQSVLKYTSKTPWPGPGYCAGWVNTVFSNAFGSKKYPALGNADDMYYGWGDSGNLNNLRTGMIIAVPSHTHTWAGYYYGHVGIYAGNGKVVDSASAGLRTVDLGSWMYWYGITHTPKWGWLNNISLR
>NC_013165.1|WP_050749550.1|1659425_1660676_+|hypothetical-protein
MATPLQKKLLDLVREFDSECAQQHVPYALFGQTDMLARNHKEFRNSTYEFHVMMPANKVHSVLDALLKQGGDQREVESLATNPLLRWNTYRYVHAGTTLVNRDDFLHFKCRGVALEIHPVYSKGPSKIRAALSLGNHAAHLKPSVSFKFKNEKQETAYGYYRKTVQYLGEQRVANYLEGFCKKSGSLKAGRGCLETLDGAIKTVEKLDLTNTKKVSFEGLDLPVLVSYESYLKAYFGSKWKEESKKKQRPANTSAVISSATRPYKESIEAFKGIGVDFDDLDARYVKYEDLLRDVLPVSKKNTDHDYHIATLCGHRIDTYAELRGKEDELHRLIAAGNFTQAKAIMHSYLEYTDKYLKMGLGFFVSQELHDIAAAIWEHDGDKEKGAKVLSCVPPALKTRNLDETVGAFLAERSEK
>NC_013165.1|WP_012798571.1|1660678_1662301_+|LicD-family-protein
MTPTQEHLLKLLLEIDEICRRHDITYFLEAGTLLGAVRHNGFIPWDNDLDITMKEADYNRFVEVCQQELDPTKRVMADNRRNREYPSVFGRYIDRETCRINNTTLFWDDYIGQSIDVFCMVELPADPEDIYEAEVRYNAYDEVVNRSFRHLRRKRSYTMDRYNEYLKAYETDRDAFLAEVEPKIFGHTYEGSQWYMVTSANGYNILPRAPFEKVAYVSFEGHMVPIPEDYFDLMVYYYGDTFGLIPDKKQIHTEMSHNHIPCKYYSDEFRACIDMPEFLGKRATWKNNMMQEGAMWTDAYLDYTSCLGLMLKMDIEDEIAEKNIDVMDLVNNPTPEGDEVLRNLFNLYIERQTSSTVVYAKCHLALGEDLEYAALYTALLLKGDRAAFDDMISVRTVNRVPMTDRIQNLVDYARHYRAAKKFILYREFAKSQEHIDWCVERHGTNSNFKTMQLMVDSGLAETADDWQSVLNSAEEILVESPDNEYAWEAKADALRFMGEREQANEIYVRLRDTAVDGFVMNRAIQQVGPSETPRFSTTKE
>NC_013165.1|WP_012798572.1|1662310_1663495_+|CDP-glycerol-glycerophosphotransferase-family-protein
MGSLKSTLKFLAADAVYGHMLPNAYRKACAQYPMVKGRVVFVENNGSTLSENFSLISQRLEKHPEYSQEAVFLHETTAGLKGRLDNSKASMRVLAEAEYIFLNDASQLVSCLPLRDGTRAFQLWHACGAFKKWGLSCVDLKYGADARMFKKHPYYANLSLVSVSSPDVSWAYQEAMGIADASTIKPLGVSRTDVFFNQGFLVRSKEKLARLFPAADGKQVILYAPTFRGRPATAATPHDLDIQLLKERFADTHVLIIKQHPFVKDPYAIPVECASFAYEVSGELSISELLACADVCITDYSSIVFEYSLLDRPICFFATDLEDYRSWRDFYYDFEEMTPGPVFTTSEDVVNWVDATAHRFSNDRIAEFRDKFMRACDGHSTDRICTEVFGSTLE
>NC_013165.1|WP_012798573.1|1663574_1664090_+|helix-turn-helix-domain-containing-protein
MDGRVLYDETTRRRAVALFEKGMGYKAVASLLDIPRETVRKWLDVYRSVGIEVLAMMGKKHTTYSFETKLAAVRAVVDEGMTRPEAMAKFGIASPSSFKKWLKAYREEGPEALKPKPKGRPRGSGSPPKELTREQELERRIQKLEAENAYLKKSIALKAEKRSRTARKPRP
>NC_013165.1|WP_126513771.1|1664032_1664938_+|IS3-family-transposase
MDSPEGGEALSNREKAAAVSELSGRYPLADLLECADLARSSYYYALSHPKAPTRPELWEAAAEIFSRTANGCGHRQIAMCLRAEQGVRIADKTVLKMMHEMGISCGIRRETDYHRYNSYRGAVGKTFENIIGRDFAADGPWEKMGTDVTEFKQPWGKAYFAPVYDFGSKEIVAWSTSLHPNMAQQHELLDQLLSKKPEGCAPILHSNMGWQYQQAGWCNRLKEAGIVQSMSRKGNCIDNGATEQVFGHLKDEFFRNQTWPSFEEFRRDLDAYIVHWNTRRRQVKLKGLTPEEFRNQSLRAA
>NC_013165.1|WP_050749551.1|1665013_1666861_-|C40-family-peptidase
MGMSHAFCERMKHMHSVKCEARFLPIAMMVAAVVLLVFLSGGVAFADDTVAADAMDAEAVGQEQPADDASDSAVADADVPVADGDSAVESEATGGEEPSIAPDAAEPDEAEAETLADGDDQDTGETPEEPAIADGWQEVDGAKYYGQNGEYVRGWLKIDGIWYYFDENTGAMTTGWQKVKNVWYYMDSDGKMTTGWQKVNGTWYYMAKSGAMQTGWLKLEDGTYYMKPGGSMSKGWQKIDDAWYYFANSGRMRTGWLTLDGEKYYLKDNGAAAVGPTTVDGKTYLMRANCKMVQKSGWASYNGKYYYLASDFTLVKGWKQIDGKWYYLKSGGDMATGWLKGTNCWYYMRESGSMATGWQKVSGKWYYFNSNGKMKTGWLKEDGYYYRLGTNGAMLTGWYKVDSTWYYSYKGGKMATDTWIGDYYVMPNGAYSSYSTTYKAGYQNPSQYYQVSSKNVYVDGHGTNFDYVTPSRITRKATRSECVDVFIARAYQYLGTPYMWNYSLQPGVGVDCIGLVYQCAYACGMDLGEFNPYNHYATGPNGWHSHDANNFWNYGSVKHVALADRQRGDILSWNGHVGIYIGNDQMIEATTVSGNVRIASIWAHGVPRGCMRLFV
>NC_013165.1|WP_012798576.1|1666875_1668684_-|LicD-family-protein
MADIKTARTQKELDLIEDVMGSSFLEHQSYVTYRDTLLLKATREANLELMRKIDAFCEEHGIKYFVYGKTLAGIVAYQDFLPGYSRIDLGFLRPEMDKFEAAFNALTDEQIEELGFKYNPFFTDKRYKNIRRIYAHIDAIEYTYVEDDLDILYGDNTLPMVIRGMIQATVFDEVPDDFFTRKKFYRQMKRRSVTFRRTIACRHMNEANYEDGYGAIIDRHMLRYKIMPLRLASWRIHHLAKRYQGRGMSNVTRMLSWRSYTVPKSDIGEIQRMNLAGLMVRCPDRPDIWGKEPILETTPELRRLQNDAKEIVVEIDRVCQELGIQYFACGGTMLGYVRHGGFIPWDDDIDIGMLRADYERFKAEAGAILDGDRFFLQTRESDPNIPYLFSKVRMNDTEYITDYNKFRPFHKGICVDVFPFDYIPNDFAEQRSFKSKVRGKAKAHHRVVNRQYPKAQAEEMPTDRKNLDWMIAQNNGKILAKHYWGISLDETQKDYDETVTCYNDVAEEEGLEYVASFVPSYTMAKVEDLYPAQRVEFDGIEIMLPKNPEKFLRMQYGDYMVPPYPHQRVGHDLLFWADAEGVGGGREAENDFFSGENNAGEE
>NC_013165.1|WP_012798577.1|1668731_1670066_-|class-II-D-tagatose-bisphosphate-aldolase,-non-catalytic-subunit
MHTMQEIVQKNKSGRRVGIYSCCSANEDVIRAALLRAYKTGTPALIESTSNQVNQMGGYTGMTPFDFADFVKGLAEELCVPFSQVILGGDHLGPLPWTNLNEDEAMENACRLAADCVLAGYEKIHLDTSMRVASDDPDQPFLTATCAERGARMCQAAEEAFKEYKKSHPDAVQPVYVIGSEVPVPGGDFNAGEMGVTTASDATNTIRIYREAFERHGLHDVFDRVVGIVIEMGVEFHEFHLDEYNRPRAAETVAAMREEPLCIEGHSTDYQTQKNLGRMVEDGVAILKVGPALTFALRESLFALENIEREIYAETPEVWSNYRDTLEKVMMDDPSSWESYYQGTPNEQRIARAYSFYDRCRYYFAKPEIKAARNKLVENLSGNVIPHCMLSQFLPIQYYRVRRGEIRNEAADIIWDHIGDSIDGYLRATDYCGMGAPEIPMEPR
>NC_013165.1|WP_012798578.1|1670065_1671124_-|galactitol-1-phosphate-5-dehydrogenase
MFAAQLQDTKTMEYLELPTPEPGAGQVQVRVHFTGICGSDVPRFHKGAVHNFPLVLGHEFSGEITAVGQGVDASLVGTRVSGIPLEPCGECEDCKNGNFSLCGHYGFVGSRSQGSMAEYVVLPVENVFPLGEKVTDMEGALYEPATVALHGIELANFREGASAIVIGAGTIGILLGQALSGYGAGVVVVSNHSQVRLDAAKAAGLENLVNTSEEGWLETAKAFNGGKGFDYVFDTAGTPKTIIDAMAVAGSKGTVVFVGTPKDDVAFTIREWEMLNRKELTLIGSWMSYSAPWPGVEWVNVDDFFNRGIMRVVPEMIDGVYKLQETATAFDRFVGTEKVRGKILIDSWKEVN

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Crispr_ID: NC_013165_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013165_3

1656415-1656501

Orphan

Consensus_repeat	Method
GCCGTTGGCGTCGAAACGGTACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013165_3

>merge|NC_013165|3|1656415-1656501|CRISPRCasFinder
GCCGTTGGCGTCGAAACGGTACCAGGTGCTGCCCGATTTCCACCAGCAACTTGTCAGAGCGTAGCCGTTGGCATCGAAACGGTACCA

>NC_013165|3|3|1656415-1656501|CRISPRCasFinder
GCCGTTGGCGTCGAAACGGTACCA	GGTGCTGCCCGATTTCCACCAGCAACTTGTCAGAGCGTA
GCCGTTGGCATCGAAACGGTACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013165.1\|WP_169304512.1\|1651047_1653348_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173810
NC_013165.1\|WP_012798578.1\|1670065_1671124_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NC_013165.1\|WP_012798559.1\|1639224_1642098_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NC_013165.1\|WP_012798573.1\|1663574_1664090_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NC_013165.1\|WP_012798567.1\|1653645_1655244_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|227588
NC_013165.1\|WP_012798564.1\|1648160_1649054_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
NC_013165.1\|WP_012798558.1\|1638104_1639238_-\|dTDP-4-amino-4,6-dideoxygalactose-transaminase	unknown	unknown	gnl\|CDD\|183283
NC_013165.1\|WP_012798560.1\|1642090_1644892_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NC_013165.1\|WP_012798569.1\|1657803_1659342_+\|cell-wall-binding-protein	unknown	unknown	gnl\|CDD\|227588
NC_013165.1\|WP_126513771.1\|1664032_1664938_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_013165.1\|WP_012798562.1\|1645965_1646868_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_013165.1\|WP_012798571.1\|1660678_1662301_+\|LicD-family-protein	unknown	unknown	gnl\|CDD\|368225
NC_013165.1\|WP_012798561.1\|1644895_1645966_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NC_013165.1\|WP_012798576.1\|1666875_1668684_-\|LicD-family-protein	unknown	unknown	gnl\|CDD\|368225
NC_013165.1\|WP_012798577.1\|1668731_1670066_-\|class-II-D-tagatose-bisphosphate-aldolase,-non-catalytic-subunit	unknown	unknown	gnl\|CDD\|377955
NC_013165.1\|WP_012798572.1\|1662310_1663495_+\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|224799
NC_013165.1\|WP_012798563.1\|1646899_1648171_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|237195
NC_013165.1\|WP_050749551.1\|1665013_1666861_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|227588
NC_013165.1\|WP_050749550.1\|1659425_1660676_+\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012798565.1\|1649189_1650986_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013165.1\|WP_169304512.1\|1651047_1653348_-\|S8-family-serine-peptidase	gnl\|CDD\|173810	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.	1.42698e-44
NC_013165.1\|WP_012798578.1\|1670065_1671124_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	6.96046e-155
NC_013165.1\|WP_012798559.1\|1639224_1642098_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	1.16482e-71
NC_013165.1\|WP_012798573.1\|1663574_1664090_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	2.15728e-08
NC_013165.1\|WP_012798567.1\|1653645_1655244_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.97834e-34
NC_013165.1\|WP_012798564.1\|1648160_1649054_-\|glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	5.26691e-44
NC_013165.1\|WP_012798558.1\|1638104_1639238_-\|dTDP-4-amino-4,6-dideoxygalactose-transaminase	gnl\|CDD\|183283	PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional.	0
NC_013165.1\|WP_012798560.1\|1642090_1644892_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	8.83471e-51
NC_013165.1\|WP_012798569.1\|1657803_1659342_+\|cell-wall-binding-protein	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	3.28083e-33
NC_013165.1\|WP_126513771.1\|1664032_1664938_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.4085e-28
NC_013165.1\|WP_012798562.1\|1645965_1646868_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	6.99234e-178
NC_013165.1\|WP_012798571.1\|1660678_1662301_+\|LicD-family-protein	gnl\|CDD\|368225	pfam04991, LicD, LicD family. The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent. These proteins are part of the nucleotidyltransferase superfamily.	6.58331e-27
NC_013165.1\|WP_012798561.1\|1644895_1645966_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_013165.1\|WP_012798576.1\|1666875_1668684_-\|LicD-family-protein	gnl\|CDD\|368225	pfam04991, LicD, LicD family. The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent. These proteins are part of the nucleotidyltransferase superfamily.	6.71992e-43
NC_013165.1\|WP_012798577.1\|1668731_1670066_-\|class-II-D-tagatose-bisphosphate-aldolase,-non-catalytic-subunit	gnl\|CDD\|377955	pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase. Proteins in this family are tagatose 6 phosphate kinases.	0
NC_013165.1\|WP_012798572.1\|1662310_1663495_+\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|224799	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane].	1.63114e-59
NC_013165.1\|WP_012798563.1\|1646899_1648171_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|237195	PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional.	7.6145e-19
NC_013165.1\|WP_050749551.1\|1665013_1666861_-\|C40-family-peptidase	gnl\|CDD\|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	9.88453e-36

>NC_013165.1|WP_012798567.1|1653645_1655244_-|L,D-transpeptidase-family-protein
MYVKQQNANVALRLALASLLATVAVAFVCGMTSVQAFADEVAADGQTDLAAEATLDEAAEPAEGTLETEAGMVGEDAEGVVADIENAEDADAVQEPEVEAPAEAAVEEDGSEDTVQTLTDPEEEELTPGWHDTEDGTGKFYVLEDKTKAKGWQDIDGKRYYFDTETAIMKTGWLDDAGTWYYLDTKTGIMKTGWVKSGSKWYFMSDPDGAMKTGWVKDKGLWYYMDSPSGVMQKGLISVNGKTYYMNGSGAMQTGWKKVDGSWYHFDSKSGAASTGWVHDGSDYYFMNGDGTMKTGWMKEGTTWYYFKGSGRMAYDQWIQDGSDWYHFAASGAMQKGWKQIKGSWYYFRDSGRMVNSQWLKVKNDWYYFYSSGAMASNTYVGNYYVNANGKWVKDTNLAKANSLYSATNWVVIIDTHKNWIYIYKGPNGNRYLYDYWRVSTGAAATPTVKGEFTVGSKGYSFGNQYYQCYYYTQFFNDYLMHSILYYSRPSADDVKDGRMGMNISHGCVRMPIERAKWIQNNIPYGTKVYIY
>NC_013165.1|WP_169304512.1|1651047_1653348_-|S8-family-serine-peptidase
MQVVDEGDSNESDVYEPLADPAVTKGTDSVVEASDEPGLPDSEIEDFEQLLVGGSGESGTVADVPTDAYDGYIVSVDEERLADFQFAMELEAAVDAGVLTPVAGNFYTCNDYRSLPGTIHADMVESIEPDYYVEAFDDGSDEGIVPDVRPVLESESGLDQAPETASDTEVMGDAVTSDTHEADASDESSEPDTDESADVSEAAKSEAQPESEETDETSEEPVETQAIKGYNDPRISEQWYLTSTNASAAWAAGYTGAVSESAKGVRPLVAIVDTGLCGTGSSSVKHEDINYGNVVAGWNVVAGSYDTAPVSRHGTMCAGIIGAEQNNGKGIAGLVPDAAMAPVMIFGDSGSTSVSNLIAGIYAGVDYTGANVMNLSVGVSEMYFENHSISPLQAAVDYAASKNVLMVAAVGNYGTGSNPLMYPAGFSNVVGVGGVSQGSLDHYPSSEFNDSVYCVAPGQNILSTAIANKSAYSAGSGTSYAAPMVSALAAMCKSVDGSMTVSEFKKFIRSTSTDLGASGYDIYYGYGVINFNAAAKQLNAMGGHVSREGWVLEDGGQYYYVNDSPVCNAWKRIDGYWYYFKSDGRAAASEWEKVGSYWYHFDSSGHMQKNRWLKSGGGWYYLGSNGAALTGWQKLSYGGSSKWFYFNGDCKMLTGLQTIRYGGSDKVFYFDGSGVMVTGWQKAGGHWYYFGGDGAGVTGWQKLAYGSSTRWYYFNGDATMATGWKKIRYAGADTWFYFGGDGAMRTGTQTIGGKTYRFASNGAWIG
>NC_013165.1|WP_012798565.1|1649189_1650986_-|hypothetical-protein
MSINGVITRLQPKCAAMEAAVDRFAASPVRRFLFAALFGLFLFALGCLTNKYYGPNDDWTMGVLLSGHYDVGGNCLFIGSTLAHLVYWLNTHIVGLNWFLIAERFMALVAFVLFVYIALGSTRLGAAAIGLCFIEFFLFSGVSHASNFSYVSGLVTAAGWLTLLATFRGDKVPVWAQVTAVLLCVFGLEWRYEVFFISLPFIGLTALIIFVDIWTSGFALEGKEWVRRLLPTVVALVLCGCAYAYTTAQWELDGWQDWREYNHWRSNISDFLMPEYDEAEDQLQALGVSKNDYVLADSWVTADPEYFTSEKLEDIVSVGHGTLRTPLDTAKWFASTLLIHDRTFFLGILAVTIGGLLMANGKRGRRMVYGLIGMMALVAIVLVFIGRFPNRVEHTVWLFVVIGIMLASREGGRTTSEKEAKAQARAMVVSGASGVVWVLATLFVVAHLVPAFNPAKIDTFVMSDEPVMEKASLQFASDPDVIRIWDVKAYTRIEQGFEYRYIPSKDFLESNQFLGGWTINSPMSNSSLENIGIDNTIKSLVEDDRTVLVTHNPDIADGVLLHLQEHYYPNATMQVVDEVNIGNDKAYWVSVYDYSAND
>NC_013165.1|WP_012798564.1|1648160_1649054_-|glycosyltransferase
MIGKVVALTRAELTGAGYDYEFVLVNDGSTDGTFDVIRSLHEEDPKIIGVNLAKNFGQHNAIMAGLGRTTGDYVMLMDDDMQTHPSQCLKLVREMENGWDVVFAEFPEQHEAWWRRMGSAFTMWTMRTLQHRPKGVESSNFFVMRDYIAKEAAKYEGPYVYVQGILFRITHNMTNVPVEHFDRESGVSGYNLKSLVRLWSIVLNFSMAPLRAAAIVGAALGSIGLIGAIALIIRRLLDPTVAMGWSSLMVTMLVCSGAIIMFLGLIGEYLGRLFMTMNKAPQYVVKEVLDDKADHDE
>NC_013165.1|WP_012798563.1|1646899_1648171_-|ATP-grasp-domain-containing-protein
MTNNETQHRLMVLGSAQEFIELVRRAQARGIYVISCDGYPNGLAKAIADASFNIDVRDTQAIAKLCQEQRVDGIIASFSDLLAECLVNIADAAGLPCYAKPDRFAYVRDKTLMKGMFDELGIPHAKSVQVHKDTLEDDLSGITFPCVTKPVDSYGSRGVYVLDTAEEVRECFDEVEAYSNRGYIIVEEYVQGDEINAMTWVCDGKATVIGLADREKSVELAHAIPHVSRIIQPSKHLRAVQDDVCAMAEKIAAYIGIETGPLSMQFFYDEKRGITVCEAAGRLFGYEHELVQNAYGFSIEELLIDYVYDREAMKERLSGLQLEGRRHSAGLYFHAHEGDIAKILGMPSEDIGEVTLDESLSYYAEGERALRGAGAMPYAARIYITADTRKALDVVTADLYRDVKFLNGEGENLLFGNQLPAGH
>NC_013165.1|WP_012798562.1|1645965_1646868_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPLTRVTSKQLLPIYDKPMIYYPLSTLMLGGIREILIISTPDDLPRFEALLGDGSQFGLELSYAVQERPEGLAQAFIIGEDFINGEPCALILGDNIFYGNGISRHLMQAVADAESGKGATVFGYWVDDPERYGIVEFDENNNAVSLEEKPEHPKSNYAVTGLYFYDSRVCEFAKQVKPSERGELEITTLNQMYLADGTLNVVTLGRGYAWLDTGTMDSLYEASEFVRTIEKSQGLAISVPEEIAYIMGWIGREQVVEAAEKYGKSNYGHHLKRVAQNRIFMSKEGD
>NC_013165.1|WP_012798561.1|1644895_1645966_-|dTDP-glucose-4,6-dehydratase
MAKTYLVTGGAGFIGSNFVLYMLKKYDDIRIVNVDKLTYAGNLENLKSVEDDPRYAFRQVDICDREAVKAVFDEFDVDYVVNFAAESHVDRSIANPQAFVETNVDGTVNMLQCAKEAWLTGDDTYKDGVKYLQVSTDEVYGTLSLDRPDEFFVETRPLDPHSPYSASKASADFFVKAFGDTYKLPYNITRCSNNYGPYQFPEKLIPLMLNNCLQHRDLPVYGDGMQVRDWLYVEDHCKAIDMVINDGVLGEVYNVGGHNERSNIFIVETIIDYVKNNVDPEVGEQLIKHVTDRKGHDRRYGIDPEKIKRDLGWYPETKFEDGIKKTIAWYLDNQDWVANVVSGEYMNYYRNMYSER
>NC_013165.1|WP_012798560.1|1642090_1644892_-|YfhO-family-protein
MADIHRRPNRILYYGLLWCACLLGLALTSIVLMRHGLTHVWANDSVPQDINFFIYTGEWIRAFLAGLVTGEFTAPMFTYNLGYGTDVFWSVMGFWNDPFNLLSVIWPPQHAEIAYELLLYARIGLCATFFVWYAKSKGHGPWACFVGALVYAFSGYVIFQAIMHHASFVNVALVFPLVLLGADRLFEGKSPIMYILALAFSLYTTFYFTYMVALALIVYCIAKYVFEREQKSLSDLAKLVAQFIGYALLGLCIAGVSVLPGLSVVLSMSRVGLERSIPLLYDGGRYWSFATDLIGGSSYVGGLCIGAVGAFCLIVFLVGRKRIDRNTWRIVLVALIVSLVIVCVPKLGSVTNGFAYVSDRWLFVFDFVAAYATVCAVPVVKGLSKQEWGRVCLVSGILLVLSGSYGFVYESRWALIMCVGFVLVVAASVALATRIPDGAYAFCLAAAVLVGAGATGCLYTVAWGGNHLGEFNSSGVSVPQLDDAAVGKASDLESQGLWRLSPVDRKGPRNASLYHDVMAIDFFGSYYNQNVDTFRSALGVADKDSCYIFAGNDGRTALEYLTGSKYVIVADGTDWRVPYGYEDTGIDAAEGYSFYVTTHAAPLAFMYDNSLSLEAFNQLNLAQRQEAMLSACVLEGGDVQDGRSMDLTSEALPYRIEDADGIEFRDGMIYASKDKASFDLVLPEGTQVPAGSFETEVCFTGLQYAPDPQDMAERLAVDEPLKNKIKRLCSNQNNEYTEIYVYTDDRETYLCLYDNFNKQYSGRENWAFNLGTSEEAPETITVWLSKKGFYTYDTLDVLAQPGEPLAEKAQALQAVAASRLELGENRIDARFEVSDEAVHYAFVSVPYSKGWSAIVDGKPAEILQANVGFMALRLQGEGVHDVQLTYRTPLLLEGLACTIAGIAVTVVIGILFARKRARSAYDEQRTKLAGLSE
>NC_013165.1|WP_012798559.1|1639224_1642098_-|YfhO-family-protein
MNRSKLTYYVALFFFITFAFAAFVLYMRYFHGRTVLWKTDALPLYLNFFIYEGEWLREGFASLASGQGWAFPAYSFDMGYGADMFVAMNGMVSDPLNLVSAICPSRYAAHMLVLLILVRLLLASAAFSEYCFSKGLSRSQTFIGSICYATSGYVLFWGVLRHPGFLNVAILFPLLLMGIDRVFDRKPAYLLVASAALLFGFSLYHSYMVCLVLVAYCLLKFCIEEDAKSLRAFGSFFVRVAGPLVLAGLIAAVLWLPVLLTMTQMGRIGLERVIPVIDDFGYYLYLPLSWVGGCAAPRGAYIGPLPLVILLTVVLAGRNRLADKTWKFITAAFILCLVAMLVPAFGSAFNGFGYVTDRWMFAFGFLTSYSVAAGIPLIGKLRRKDYVGVAAVCLLLCAIFAAGAYGWKNPWAKQGAVCFVVVCVLVGCIVACTRIKRGGNHAAHAGLSQRAVVVMLMVPLLVGTASMLEGMFSSNKGDYVSEYMALDEPWTEMHHENVGRLVSNLDGMNSGGVSIDNDLRGLGDSQENPSRVSTPVIYGMKNATVAHGVMSDNFYSSFYNQYVDDFRTELGVSDHFLNYSFTGVDSRFALLSLTGSRYFIASDYGAWRTPLTYRPVDTGSLVFEGDTRYTVSETPYALPLVVGFDEAASEDTYRSLDMVQRQELLLHACVLNDCEADPTLKDFAGESHDVDFDIGLDDGIVMTDGEFTVSDNGLPVQFTFQGKPNCEYYLVIEGLDFEGISPTEYAEMKGESVTWETRWKEWVWEAPSEGLILVGSQGNTRELRIANATSSAYGGKHDWVFMGAVSGDEPASEITLTFDAWGRYTFDSIRIVEQPVEPLVDQAEHVLSLSNPTIVLGNDAVWAKLDSCQECKYALVTVPYSEGWSATVNGEPAEVLRADTAFMAVALPGDEHCDVELHYVTPGLKAGALISIIGVTLAVVLTIRRRKTRRRIEHDSV
>NC_013165.1|WP_012798558.1|1638104_1639238_-|dTDP-4-amino-4,6-dideoxygalactose-transaminase
MIPFNRPPYVGNEMDYVREAAEVNRKICGDGPFTKKCHAWMQERFHAQKALLTTSGTTALEMAALLCEIEPGDEVILPSYTFSTTATAFVLAGAKLVFVDIRPDTMNIDETKIEAAITDKTRVIVPVHYAGVACDMDAIMDIARRHNLLVVEDAAQGVMSTYKGKALGTIGDFGCYSFHETKNYSMGEGGALVINDERFNERAEIIREKGTNRSRFLRGQVDKYTWVEYGSSYLPSDMNAAYLLAQLERADEINDSRIHAWNRYNENLADLAADGSIELPFIPEGCGHNAHMFYIKCKDLEERTSLISYLGDRDIMSVFHYVPLHSSPAGLRYGRTAADMSVTDRESNRLTRLPMYYGLTDEDVDRVCDAVHGFYAQ
>NC_013165.1|WP_012798569.1|1657803_1659342_+|cell-wall-binding-protein
MHISFTTHKGTRAFAGLLTAACLTSMLLLSGAAYADDTVSPDAGLNATEQSTPDGNTAVTGDTESNGTGESEAVDASDEAPDAESGANDGNAADGDSDSQDGNPAPDDQGGQGADSTDDPGTEPDPPVDPDPVDPDPEEDPTPPDGWFEDNAGWHYRQNGKLKTGWLVYKNKYYLLNSKGVMLTGWQQRSGSWYHFNGSGAMETGWKKLSWDSKKAWYYLGGNGKMRTGWLKYDGHWYYLGKDGAMRTGWLKDDGYWFYLGRNGAVRTGWQSIDYNGAKTWFRFDGGGRMYTGWTKSGGFWYYLGGNGAMRTGWQAVGGEWYYLSDNGKMDTGWLKYKGSWYYLLSNGMMVSDTWLRIGGVYYYFKPHGDVPSVNYPTEGSLTSKQQSVLKYTSKTPWPGPGYCAGWVNTVFSNAFGSKKYPALGNADDMYYGWGDSGNLNNLRTGMIIAVPSHTHTWAGYYYGHVGIYAGNGKVVDSASAGLRTVDLGSWMYWYGITHTPKWGWLNNISLR
>NC_013165.1|WP_050749550.1|1659425_1660676_+|hypothetical-protein
MATPLQKKLLDLVREFDSECAQQHVPYALFGQTDMLARNHKEFRNSTYEFHVMMPANKVHSVLDALLKQGGDQREVESLATNPLLRWNTYRYVHAGTTLVNRDDFLHFKCRGVALEIHPVYSKGPSKIRAALSLGNHAAHLKPSVSFKFKNEKQETAYGYYRKTVQYLGEQRVANYLEGFCKKSGSLKAGRGCLETLDGAIKTVEKLDLTNTKKVSFEGLDLPVLVSYESYLKAYFGSKWKEESKKKQRPANTSAVISSATRPYKESIEAFKGIGVDFDDLDARYVKYEDLLRDVLPVSKKNTDHDYHIATLCGHRIDTYAELRGKEDELHRLIAAGNFTQAKAIMHSYLEYTDKYLKMGLGFFVSQELHDIAAAIWEHDGDKEKGAKVLSCVPPALKTRNLDETVGAFLAERSEK
>NC_013165.1|WP_012798571.1|1660678_1662301_+|LicD-family-protein
MTPTQEHLLKLLLEIDEICRRHDITYFLEAGTLLGAVRHNGFIPWDNDLDITMKEADYNRFVEVCQQELDPTKRVMADNRRNREYPSVFGRYIDRETCRINNTTLFWDDYIGQSIDVFCMVELPADPEDIYEAEVRYNAYDEVVNRSFRHLRRKRSYTMDRYNEYLKAYETDRDAFLAEVEPKIFGHTYEGSQWYMVTSANGYNILPRAPFEKVAYVSFEGHMVPIPEDYFDLMVYYYGDTFGLIPDKKQIHTEMSHNHIPCKYYSDEFRACIDMPEFLGKRATWKNNMMQEGAMWTDAYLDYTSCLGLMLKMDIEDEIAEKNIDVMDLVNNPTPEGDEVLRNLFNLYIERQTSSTVVYAKCHLALGEDLEYAALYTALLLKGDRAAFDDMISVRTVNRVPMTDRIQNLVDYARHYRAAKKFILYREFAKSQEHIDWCVERHGTNSNFKTMQLMVDSGLAETADDWQSVLNSAEEILVESPDNEYAWEAKADALRFMGEREQANEIYVRLRDTAVDGFVMNRAIQQVGPSETPRFSTTKE
>NC_013165.1|WP_012798572.1|1662310_1663495_+|CDP-glycerol-glycerophosphotransferase-family-protein
MGSLKSTLKFLAADAVYGHMLPNAYRKACAQYPMVKGRVVFVENNGSTLSENFSLISQRLEKHPEYSQEAVFLHETTAGLKGRLDNSKASMRVLAEAEYIFLNDASQLVSCLPLRDGTRAFQLWHACGAFKKWGLSCVDLKYGADARMFKKHPYYANLSLVSVSSPDVSWAYQEAMGIADASTIKPLGVSRTDVFFNQGFLVRSKEKLARLFPAADGKQVILYAPTFRGRPATAATPHDLDIQLLKERFADTHVLIIKQHPFVKDPYAIPVECASFAYEVSGELSISELLACADVCITDYSSIVFEYSLLDRPICFFATDLEDYRSWRDFYYDFEEMTPGPVFTTSEDVVNWVDATAHRFSNDRIAEFRDKFMRACDGHSTDRICTEVFGSTLE
>NC_013165.1|WP_012798573.1|1663574_1664090_+|helix-turn-helix-domain-containing-protein
MDGRVLYDETTRRRAVALFEKGMGYKAVASLLDIPRETVRKWLDVYRSVGIEVLAMMGKKHTTYSFETKLAAVRAVVDEGMTRPEAMAKFGIASPSSFKKWLKAYREEGPEALKPKPKGRPRGSGSPPKELTREQELERRIQKLEAENAYLKKSIALKAEKRSRTARKPRP
>NC_013165.1|WP_126513771.1|1664032_1664938_+|IS3-family-transposase
MDSPEGGEALSNREKAAAVSELSGRYPLADLLECADLARSSYYYALSHPKAPTRPELWEAAAEIFSRTANGCGHRQIAMCLRAEQGVRIADKTVLKMMHEMGISCGIRRETDYHRYNSYRGAVGKTFENIIGRDFAADGPWEKMGTDVTEFKQPWGKAYFAPVYDFGSKEIVAWSTSLHPNMAQQHELLDQLLSKKPEGCAPILHSNMGWQYQQAGWCNRLKEAGIVQSMSRKGNCIDNGATEQVFGHLKDEFFRNQTWPSFEEFRRDLDAYIVHWNTRRRQVKLKGLTPEEFRNQSLRAA
>NC_013165.1|WP_050749551.1|1665013_1666861_-|C40-family-peptidase
MGMSHAFCERMKHMHSVKCEARFLPIAMMVAAVVLLVFLSGGVAFADDTVAADAMDAEAVGQEQPADDASDSAVADADVPVADGDSAVESEATGGEEPSIAPDAAEPDEAEAETLADGDDQDTGETPEEPAIADGWQEVDGAKYYGQNGEYVRGWLKIDGIWYYFDENTGAMTTGWQKVKNVWYYMDSDGKMTTGWQKVNGTWYYMAKSGAMQTGWLKLEDGTYYMKPGGSMSKGWQKIDDAWYYFANSGRMRTGWLTLDGEKYYLKDNGAAAVGPTTVDGKTYLMRANCKMVQKSGWASYNGKYYYLASDFTLVKGWKQIDGKWYYLKSGGDMATGWLKGTNCWYYMRESGSMATGWQKVSGKWYYFNSNGKMKTGWLKEDGYYYRLGTNGAMLTGWYKVDSTWYYSYKGGKMATDTWIGDYYVMPNGAYSSYSTTYKAGYQNPSQYYQVSSKNVYVDGHGTNFDYVTPSRITRKATRSECVDVFIARAYQYLGTPYMWNYSLQPGVGVDCIGLVYQCAYACGMDLGEFNPYNHYATGPNGWHSHDANNFWNYGSVKHVALADRQRGDILSWNGHVGIYIGNDQMIEATTVSGNVRIASIWAHGVPRGCMRLFV
>NC_013165.1|WP_012798576.1|1666875_1668684_-|LicD-family-protein
MADIKTARTQKELDLIEDVMGSSFLEHQSYVTYRDTLLLKATREANLELMRKIDAFCEEHGIKYFVYGKTLAGIVAYQDFLPGYSRIDLGFLRPEMDKFEAAFNALTDEQIEELGFKYNPFFTDKRYKNIRRIYAHIDAIEYTYVEDDLDILYGDNTLPMVIRGMIQATVFDEVPDDFFTRKKFYRQMKRRSVTFRRTIACRHMNEANYEDGYGAIIDRHMLRYKIMPLRLASWRIHHLAKRYQGRGMSNVTRMLSWRSYTVPKSDIGEIQRMNLAGLMVRCPDRPDIWGKEPILETTPELRRLQNDAKEIVVEIDRVCQELGIQYFACGGTMLGYVRHGGFIPWDDDIDIGMLRADYERFKAEAGAILDGDRFFLQTRESDPNIPYLFSKVRMNDTEYITDYNKFRPFHKGICVDVFPFDYIPNDFAEQRSFKSKVRGKAKAHHRVVNRQYPKAQAEEMPTDRKNLDWMIAQNNGKILAKHYWGISLDETQKDYDETVTCYNDVAEEEGLEYVASFVPSYTMAKVEDLYPAQRVEFDGIEIMLPKNPEKFLRMQYGDYMVPPYPHQRVGHDLLFWADAEGVGGGREAENDFFSGENNAGEE
>NC_013165.1|WP_012798577.1|1668731_1670066_-|class-II-D-tagatose-bisphosphate-aldolase,-non-catalytic-subunit
MHTMQEIVQKNKSGRRVGIYSCCSANEDVIRAALLRAYKTGTPALIESTSNQVNQMGGYTGMTPFDFADFVKGLAEELCVPFSQVILGGDHLGPLPWTNLNEDEAMENACRLAADCVLAGYEKIHLDTSMRVASDDPDQPFLTATCAERGARMCQAAEEAFKEYKKSHPDAVQPVYVIGSEVPVPGGDFNAGEMGVTTASDATNTIRIYREAFERHGLHDVFDRVVGIVIEMGVEFHEFHLDEYNRPRAAETVAAMREEPLCIEGHSTDYQTQKNLGRMVEDGVAILKVGPALTFALRESLFALENIEREIYAETPEVWSNYRDTLEKVMMDDPSSWESYYQGTPNEQRIARAYSFYDRCRYYFAKPEIKAARNKLVENLSGNVIPHCMLSQFLPIQYYRVRRGEIRNEAADIIWDHIGDSIDGYLRATDYCGMGAPEIPMEPR
>NC_013165.1|WP_012798578.1|1670065_1671124_-|galactitol-1-phosphate-5-dehydrogenase
MFAAQLQDTKTMEYLELPTPEPGAGQVQVRVHFTGICGSDVPRFHKGAVHNFPLVLGHEFSGEITAVGQGVDASLVGTRVSGIPLEPCGECEDCKNGNFSLCGHYGFVGSRSQGSMAEYVVLPVENVFPLGEKVTDMEGALYEPATVALHGIELANFREGASAIVIGAGTIGILLGQALSGYGAGVVVVSNHSQVRLDAAKAAGLENLVNTSEEGWLETAKAFNGGKGFDYVFDTAGTPKTIIDAMAVAGSKGTVVFVGTPKDDVAFTIREWEMLNRKELTLIGSWMSYSAPWPGVEWVNVDDFFNRGIMRVVPEMIDGVYKLQETATAFDRFVGTEKVRGKILIDSWKEVN

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Crispr_ID: NC_013165_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013165_4

2623635-2623773

Orphan

Consensus_repeat	Method
TTGCGGGGACGTCCGCGACGCTTGGGCGCCTCTTCGGCAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013165_4

>merge|NC_013165|4|2623635-2623773|CRISPRCasFinder
TTGCGGGGACGTCCGCGACGCTTGGGCGCCTCTTCGGCAGGGGTTTCGGTCGCAGGAGCCTCGGCGGCAGGTGCCGTTGCGGGCTCCGCGACGGCTTTGCGGGGACGTCCGCGACGCTTGGGCGCCTCTTCGGCAGGGG

>NC_013165|4|4|2623635-2623773|CRISPRCasFinder
TTGCGGGGACGTCCGCGACGCTTGGGCGCCTCTTCGGCAGGGG	TTTCGGTCGCAGGAGCCTCGGCGGCAGGTGCCGTTGCGGGCTCCGCGACGGCT
TTGCGGGGACGTCCGCGACGCTTGGGCGCCTCTTCGGCAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013165.1\|WP_012799471.1\|2615903_2616620_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NC_013165.1\|WP_012799480.1\|2627348_2628125_+\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|238384
NC_013165.1\|WP_012799477.1\|2623989_2624670_-\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NC_013165.1\|WP_012799486.1\|2633282_2634122_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|224315
NC_013165.1\|WP_174259115.1\|2614319_2615156_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|376506
NC_013165.1\|WP_012799482.1\|2628947_2629499_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NC_013165.1\|WP_012799473.1\|2618756_2618975_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NC_013165.1\|WP_012799470.1\|2615329_2615884_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_013165.1\|WP_012799479.1\|2626269_2627328_+\|nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|377262
NC_013165.1\|WP_012799481.1\|2628222_2628951_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NC_013165.1\|WP_126513823.1\|2629500_2630676_-\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|119376
NC_013165.1\|WP_012799485.1\|2632296_2632980_-\|HIRAN-domain-containing-protein	unknown	unknown	gnl\|CDD\|214906
NC_013165.1\|WP_012799466.1\|2611087_2612158_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100084
NC_013165.1\|WP_050749662.1\|2620028_2620256_+\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NC_013165.1\|WP_012799478.1\|2625111_2626128_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_013165.1\|WP_012799468.1\|2613381_2614320_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_013165.1\|WP_050749582.1\|2620433_2621813_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NC_013165.1\|WP_126513902.1\|2616724_2618266_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_013165.1\|WP_012799467.1\|2612157_2613336_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NC_013165.1\|WP_012799484.1\|2631376_2632228_+\|TIGR02452-family-protein	unknown	unknown	gnl\|CDD\|131505

Protein	Function_ID	Function_description	E-value
NC_013165.1\|WP_012799471.1\|2615903_2616620_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	4.75085e-149
NC_013165.1\|WP_012799480.1\|2627348_2628125_+\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|238384	cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.	5.44136e-99
NC_013165.1\|WP_012799477.1\|2623989_2624670_-\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	2.80917e-126
NC_013165.1\|WP_012799486.1\|2633282_2634122_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	6.85514e-50
NC_013165.1\|WP_174259115.1\|2614319_2615156_-\|isoprenyl-transferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	4.16011e-130
NC_013165.1\|WP_012799482.1\|2628947_2629499_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	2.79553e-106
NC_013165.1\|WP_012799473.1\|2618756_2618975_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	3.13174e-15
NC_013165.1\|WP_012799470.1\|2615329_2615884_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	6.5508e-101
NC_013165.1\|WP_012799479.1\|2626269_2627328_+\|nucleoid-associated-protein	gnl\|CDD\|377262	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein.	2.35233e-30
NC_013165.1\|WP_012799481.1\|2628222_2628951_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	1.96969e-12
NC_013165.1\|WP_126513823.1\|2629500_2630676_-\|glycoside-hydrolase	gnl\|CDD\|119376	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.	1.92152e-77
NC_013165.1\|WP_012799485.1\|2632296_2632980_-\|HIRAN-domain-containing-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	4.1759e-13
NC_013165.1\|WP_012799466.1\|2611087_2612158_-\|site-2-protease-family-protein	gnl\|CDD\|100084	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.	8.57075e-24
NC_013165.1\|WP_050749662.1\|2620028_2620256_+\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	5.47196e-06
NC_013165.1\|WP_012799478.1\|2625111_2626128_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.90472e-12
NC_013165.1\|WP_012799468.1\|2613381_2614320_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.80984e-52
NC_013165.1\|WP_050749582.1\|2620433_2621813_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.85889e-61
NC_013165.1\|WP_126513902.1\|2616724_2618266_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.23859e-105
NC_013165.1\|WP_012799467.1\|2612157_2613336_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NC_013165.1\|WP_012799484.1\|2631376_2632228_+\|TIGR02452-family-protein	gnl\|CDD\|131505	TIGR02452, conserved_hypothetical_protein, TIGR02452 family protein. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.	2.79407e-33

>NC_013165.1|WP_050749582.1|2620433_2621813_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MERGDIVTAVFREGRAWVYAMFAAIVLSASLGGLSQTGLNAMLSQVCSEFGISTGVGQWLATIYMFVIGAIVPLSSFFMGRFRTKDLVLLSAGLFIGGALLAACAPNFWMLLFARIMQACATGLLMPLTQTFSMTRFPEGRKATAMGISGIAMGFAPNIGPTIGGSMVDAFGWRSFFWMLAGIALAIALACAFLVQRHDDASYPAGIDPISFVLCTTGFGGILMACSYASSYAVLDPHVWGPAVVGVATLVAFFLRQTRIERPMVDPSIFKSRSFNAGFAALCLLTASFMGITLLVPLYIQGLCGGTAFEAGIVLLPGTVTALVMNPLAGYLTDKIGVRPVTVVAGLFLATGSAMMAFCDASTSLGVVACIQAIRQIGVSSLIGPLTSFSLSQLKGKCISDGSGFGLAARQTSASVGTALMVFCLEGAGLAGEMSFHAAFGVSAVCAIGCLLVILRRVR
>NC_013165.1|WP_050749662.1|2620028_2620256_+|TM2-domain-containing-protein
MLGIFLGSLGIHKFYLGYTKEGLIMLLVSLIAGILTLGLAALVMEVIGLIEGIMYLTKSDWEFQQTYVQGHKGWF
>NC_013165.1|WP_012799473.1|2618756_2618975_+|acyl-carrier-protein
MATIDTIKAILNDNLDIDPDAVTDDSTFDSLDIDSLDMVELVCELEDRMGIEFGEPEGLTTVADLVAYIDSL
>NC_013165.1|WP_126513902.1|2616724_2618266_-|trypsin-like-peptidase-domain-containing-protein
MPATYQVAAPASPGTTQRYASTAQFQAASQQSAAGYQTYQQTYAQQQAFAQQQAYAQQQAQQAQQAAQAKQAKKNASGQKSGAGKTFAAGFAGAALACALGLGGFVGYGALTSNNGSQGDVAETPALTQPQTKESSSTTINVNGEDTTLAQAVAAKALPSIASIDVYTKSGGSSWGWGMEADSSDSNSALSLYSLGSGVVITEDGYIITNYHVVEGADALTATINGVEYDAEYVGADPTSDIAVIKVNATDLTAIEIGSSSDVQVGEWVMSLGNAFGLDNSVSTGIVSALQRSTTLADETTGEVMIYPNMIQTDATINPGNSGGALVNANGELIGINSMITSYSGSSSGVGFAIPIDYAMGLAEQIIAGQTPTHAQLGVSMSAINAEVAQYNNLPTDKGVYVAAVYSGTAADEAGLETGDIIVKFDGQSITAPEELQLAVRGCAVGDTVDVVVNRGGEEITISVTLGSDETALSQEGAPQNNGNGYGNNDGGNEYGYGYNEQDLYDLFEYFNR
>NC_013165.1|WP_012799471.1|2615903_2616620_-|UMP-kinase
MPEGYKYNRVLLKLSGEALMGQNGYGIDPSVIDALAEEIKEVVNDGVQIAITVGGGNIFRGVAGSANGMDRAQADYIGMLATVMNALALQDGLQRHGVESRVQSAIEMHQVAETYIRLRAIRHMEKGRVVIFAAGTGNPYFTTDTTAALRACEIGADCMMKATKVDGIYTADPVKDPNAVKYDKVSYLEVLTKELNVMDAAAISLCKDNKMPLLVFDLTVHGNIRRALKGENVGTLVY
>NC_013165.1|WP_012799470.1|2615329_2615884_-|ribosome-recycling-factor
MEEILADAEIGMDEAIDNLKTAFASVRTGRANAMVLDKIRVDYYGVPTPINQMAAVKVPEAHMLTVEPWDKSMLRAVEAAIMASDLGITPSNDGHVIRLPFPVLTEERRKELAKTCHTYAEECRIAIRNVRREANAKIDKGKKASEIPEDDARRGEEQVQKLTDSYVKKVDELLKAKEAEVMSI
>NC_013165.1|WP_174259115.1|2614319_2615156_-|isoprenyl-transferase
MLYLRCAAQVAFRVYERNAVKKPIDEIFPNPPEDLDPHALIEERVPKHVAVIMDGNGRWAKKRLLNRLNGHKAGVEAVRELIRAANDVGVECLTIYSFSTENWKRPEEEVTGLMDLFAKTMLAEVDGLHEEHVVVCPMGDLSALPQDTQDAFMKAWEKTKDNDGMKLFVAVNYGSRKEICDAVNEIVMEAIEQHEETYTVPLVTEELLSKHLYVSGIPDPDLLIRTSGEMRLSNFLLWQIAYSEFYCTDTLWPDFDRYEFLRALLDYQSRNRRFGAVS
>NC_013165.1|WP_012799468.1|2613381_2614320_-|phosphatidate-cytidylyltransferase
MEDQRRVRNRRSESQEASRTRRVAARGVEEVHMPRTSAEREVQSSDLAVRTQTGFIYVALAIILTLASGPSMVILLCVLAGISSGELFYMLRSDAKMPNAVFGIVAAVLYPVVVWLWGMEGAMALTLVFLFALLCWYVFSLEVRVSDVGISLFGALYCGMMLSSFIPVRYALGGFWGGLLVVLIFAGVWLNDAMAYLVGSRFGRHKMAPKISPKKSWEGFAAGLFASVVVWCFMTLVPGVTMGIPKAILFGILCGLAGVLGDLAESRIKRNTGVKDSGNIMPGHGGLLDRNDSMFAVAVVSAVLLLGTGCLG
>NC_013165.1|WP_012799467.1|2612157_2613336_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MTAKRVAVLGSTGSIGTQTLDVAWRHPDKIQIVALAANHSVETVVEQAHEFRVRNVAFGDETMRDHAMLANVHEGVSVGFGQQGILDLVHSDDVDCVVNALVGAAGMRASYETLAAGKQLALANKESLVVAGDLIMPLAKQLDEAAGHPWALMPIDSEHGAIYQCLLGERHEEVAALWVTASGGPFRGRTRDQLSGMTAKEALAHPTWKMGPKITIDSSTLMNKGLEVIEAHHLFDMPYDRIKVVVQPQSAIHSMVEYSDGSVKAHLGTTDMRIPIQFALSYPDRWDAPVEPMDFTKLGKLEFYPVDEETFRCFALAKRAGATGGTLPCVMNAANEVAVAAFLADRCGYLDIDACVEHAMDAHEVQAVESLDQLAEIDAWARAVSREYLGVA
>NC_013165.1|WP_012799466.1|2611087_2612158_-|site-2-protease-family-protein
MTVALEILYLILVLSILVFIHEGGHFLAARMFGVRVTEFMLGLPGPKIGFTKGDTMFGVTAVPLGGYAKICGMEPGAENPYIEKALAFAYERGTFYADDFAFQEGISIDDAVEVFYILEEWGCLVGPKKTDEHNVFYTRARRIKRKGIDLKEGEPRPFDDAHELYLEERSHTYRSLPFWKRSVILLAGIFMNLLFVVVVFVVVFSILGMDYTLESGEVQHVVLPVWQAIVGAFNYMGVVAVAIVGLFNPATAGETISNSVSVVGMAVVSKQYADAGLAMFLVFMAMISVSLGLMNLLPIPPLDGGRFVIEIYQKITSRFVGTRAMNAMSIVGVTLFMLLFVVMLNQDIQRFVFGNW
>NC_013165.1|WP_012799477.1|2623989_2624670_-|fructose-6-phosphate-aldolase
MKFFLDTADLDEIKEAASWGALAGVTTNPTLYSRIGGKLDDFYNHIERICDIVDGPVSAESVAMTRDEIVRDGRELARIAPNVVVKVPTMVEGLAACRTLADEGIRVNMTLCFTVPQAILAARAGARYISPFVGRFDDISENGLAQLEDVVTAINNYDYTENTVNGEQIEIIAASIRSANHVTQAALMGADIATVPFNVLKKMIQHPLTDRGLESFLKDWEKVKNA
>NC_013165.1|WP_012799478.1|2625111_2626128_+|helix-turn-helix-transcriptional-regulator
MSFRDNLQYLRSTRSMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKISQIFDCTIDELVQGDLTHRDIQPEKAMPVDMSSDSIGYVDRFKVHARLISIGVGCFIIGCGLGLLLTGLLQTIGFSTQVEILLPVLVLAFVIAGLAFVIPESTRHTLFMKEHPYIIDFFSSEERMENGVRTSRGIVLGTGIILASLILVFVFGERIDGIEPLEEIVSGIMLIGIAVGVGFIVYFGILSDMTNIAEYNVSALCELTDEEAVELLDDRDASERERLLAKRRINKIVGASCGITMVIATIAGLVLLFSEFEFFWMAWCVGGLICAVIAIVGSILAPKPNAA
>NC_013165.1|WP_012799479.1|2626269_2627328_+|nucleoid-associated-protein
MKINHAILHVFDFISCVNVFATEEVNLEDKSAKSYISKHANKALNSLDNKHGVFYEDSMFAEELQAYAQGQRSFMDMSRKIADYLADELGRQQKADSTDLLIVDFEVPVNGNQGGEATDEEVDASFEGQAMRYFAILLLDSKQAYMHEVGRGDGGRNDIARHFAILPSPSQKVQSYAVIDLMTGGVTLSDKKRLIAGEERFLLADGLLQCSMEASSKEAFSAVADVVETVANEYGANSALALSRAKAYAAEVAFDDGDFDLDELGREVFDGRSDMMGRFDEYAAEEHLSGKMKLDKAAVQRFTKNHKIRTDTGIEITFPAEYGRNPDFIEFISEPDGRISISLKNIGYIENR
>NC_013165.1|WP_012799480.1|2627348_2628125_+|tRNA-threonylcarbamoyladenosine-dehydratase
MALNRFSRTELIMGAPALERLSASRVAVFGVGGVGGYVVEALVRGGVGALDLIDNDTVCLTNINRQIIATDETLGRLKVDVAAERIRTINPDCRVTTHTCFYLPETADRFDFTQYDYVVDAVDTITAKLQLITEAFNTQTPIISSMGTANKMDPTAFQVADISKTSVCPLAKIIRKELRKRGIKHTKVVYSTEQALTPLPLPEDTDLPLDPSDIDSRTGRRKITPGSNSFVPPVAGFIIASEVIKDLTDGLRLDQAGV
>NC_013165.1|WP_012799481.1|2628222_2628951_+|acyl-ACP-thioesterase
MAFVITSLPQFRDAEADGRIATRGYMNWFQDAATGHFHQFGKGNDVIIDAYGLGWLATRYNLVIESRADFSGPVESKVWIESQKSPVRLVQYLIITQGGELRAKGAMEMCIANVAEGKVARLSEIDFPTNLAEHLGIETPRLQRIRFTAEGADHAYTYHVRYSDIDNNLHMNNLHYVDLALNAFNTEFHMAHPTRSFEIEYIAQCHEGDAVEVFKREAEPGVWEVTGMNGDELCTRVRLTVD
>NC_013165.1|WP_012799482.1|2628947_2629499_-|DNA-3-methyladenine-glycosylase-I
MGMRCPWGDSDDLMRDYHDNRWGKPVHDDRELFAMLALEGQQAGLSWSLILKREAAYRAAFDGFDPQVIAAYDDARIEELLACDGLIHNRRKMLSVRTNAQAFLRVQQEFGSFDVYIWGFADGCTIDHRLARQDDMPAFDDLSKRVSRDMKKRGFTFVGPTIVYSYLQAIGVINDHILECPYR
>NC_013165.1|WP_126513823.1|2629500_2630676_-|glycoside-hydrolase
MAEHQGRHARVESTRGSSGRTTSAGSSRPQPQRLSQSQRSVRSTQVGGSQQPRSGSSRMGSDSTSRYAREPQRSPQRSHSRYAESQRRADRARAGARKRKGPTRRSGRASAWALRIAAVVLLLVVFAVGGGIAGFLASDQGASGEHRFTESLGEGVDAQIEPIYDWGNLRMTEDGRRVYEMNGEVVSRQGIDVSAHQEHIDWSAVVDDGIDFAMIRLGYRSVDEGNVALDDYYAYNLEQAQASGLDVGVYFFSAAVTVEEAVEEAQFCIENLQAQDAHLQYPVVFDLEMSYGGRVEGLTRDELTAIAQAFCTTVEEAGYQAMVYGNASDMLCFNLGDLSAYPRWHAEYTPSPAYAYYDFVMWQYTDSGQVAGIVGNVDLDLDLSAARPEGR
>NC_013165.1|WP_012799484.1|2631376_2632228_+|TIGR02452-family-protein
MPTKEERAKQAAKHLAFVNTVFASDTAASIEATVVYEDGDGRELAVPEPRFEATATDATTDFTVTALFKAQGKVAVVDPCAFTKPGGNYVEGAFGPEQVLCADSNLYPILCGLKETYHDANRDYWSGQLFTDRALWIPDVKFTRSGDLRTAGIVAVPAPNRTRALENHRSAAECDQAIKTRIETIMRVAAANGVDTLICNAFGCGFNGNDDTVVAQLFRDWIDAHQGVFENVIFAVPRANFAAFDALFAAPEIEEPVYVPTDEEDEDDFDIYSIELPEGITLR
>NC_013165.1|WP_012799485.1|2632296_2632980_-|HIRAN-domain-containing-protein
MYGGPFDFNDNGRMDPFEASVGHHVIFDVFGTEGGSDDDAWTTSSRTKPKASSQRKSALDAWLNSSDDDGFNRATDSWNDVLESEYPWTSEPSAASSWCDTIDDEDGDSEDPWAADNDEDEDLYFHTYVAGTKFDNHDVAWSHAEFTYGLEIDLVREPNNEYDPNAIAVYADGLHGGYVPADVASTLADLMDSGWEATASNVRISVDDDREGPYRVRLDIRAHNPCA
>NC_013165.1|WP_012799486.1|2633282_2634122_+|ADP-ribosylglycohydrolase-family-protein
MNNVANCLYGAMIGDIAGSRFEWNATKHKTGYALFDSECCYTDDTAMTIAIARALMASGRDAERFESLAVQELRDVGRRFPHAGYGGSFRRWLKNPNPEPYNSWGNGSAMRVSSCGYAARTLDEALQLAEASARVTHNHPEGIKGAQATAAAIYLARTGADKDSIRDYVETTFEYDLHRTLNDIRPGYAFDVSCQGSVPESIICFLESDSYEDTLRNAISLGGDSDTMAAIGGSIAWAFYLGGKDLAEEPEADLASQADLFLPQEFIQTARQFDEFCLA

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Crispr_ID: NC_013165_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013165_5

2644709-2644806

Orphan

Consensus_repeat	Method
GGCATCCGCCCGCCCATGTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013165_5

>merge|NC_013165|5|2644709-2644806|CRISPRCasFinder
GGCATCCGCCCGCCCATGTCGCCGCCAGGCATCTGCCCGCCCATGTCGCCAGGCGCGCCGCCCATGTCGCCGCCCGGCATCTGCCCGCCCATGTCGCC

>NC_013165|5|5|2644709-2644806|CRISPRCasFinder
GGCATCCGCCCGCCCATGTCGCC	GCCAGGCATCTGCCCGCCCATGTCGCCAGGCGCGCCGCCCATGTCGCCGCCC
GGCATCTGCCCGCCCATGTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013165.1\|WP_012799487.1\|2634180_2635365_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NC_013165.1\|WP_012799491.1\|2640217_2641501_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_013165.1\|WP_126513825.1\|2654439_2655816_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_013165.1\|WP_012799501.1\|2651688_2652927_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013165.1\|WP_012799498.1\|2649204_2649798_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_013165.1\|WP_012799496.1\|2647405_2648032_-\|IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|377923
NC_013165.1\|WP_012799499.1\|2649825_2650629_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225852
NC_013165.1\|WP_126513903.1\|2653637_2654255_-\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NC_013165.1\|WP_012799485.1\|2632296_2632980_-\|HIRAN-domain-containing-protein	unknown	unknown	gnl\|CDD\|214906
NC_013165.1\|WP_012799493.1\|2642919_2644434_-\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NC_013165.1\|WP_012799489.1\|2636871_2639685_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341233
NC_013165.1\|WP_012799486.1\|2633282_2634122_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|224315
NC_013165.1\|WP_012799497.1\|2648727_2649021_+\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012799495.1\|2646215_2647394_-\|phosphoribosylaminoimidazolecarboxamide-formyltransferase	unknown	unknown	gnl\|CDD\|180841
NC_013165.1\|WP_050749584.1\|2650644_2651547_-\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NC_013165.1\|WP_050749583.1\|2639681_2640221_+\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012799492.1\|2641566_2642766_-\|hypothetical-protein	unknown	unknown	unknown
NC_013165.1\|WP_012799502.1\|2652923_2653604_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013165.1\|WP_012799488.1\|2635505_2636867_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225208
NC_013165.1\|WP_012799484.1\|2631376_2632228_+\|TIGR02452-family-protein	unknown	unknown	gnl\|CDD\|131505

Protein	Function_ID	Function_description	E-value
NC_013165.1\|WP_012799487.1\|2634180_2635365_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.17443e-80
NC_013165.1\|WP_012799491.1\|2640217_2641501_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.11376e-20
NC_013165.1\|WP_012799501.1\|2651688_2652927_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.2121e-28
NC_013165.1\|WP_012799498.1\|2649204_2649798_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.96172e-11
NC_013165.1\|WP_012799496.1\|2647405_2648032_-\|IMP-cyclohydrolase	gnl\|CDD\|377923	pfam07826, IMP_cyclohyd, IMP cyclohydrolase-like protein. This enzyme may catalyze the cyclization of 5-formylamidoimidazole-4-carboxamide ribonucleotide to inosine monophosphate (IMP), a reaction which is important in de novo purine biosynthesis in archaeal species. This single domain protein is arranged to form an overall fold that consists of a four-layered alpha-beta-beta-alpha core structure. The two antiparallel beta-sheets pack against each other and are covered by alpha-helices on one face of the molecule. The protein is structurally similar to members of the N-terminal nucleophile (NTN) hydrolase superfamily. A deep pocket was in fact found on the surface of IMP cyclohydrolase in a position equivalent to that of active sites of NTN-hydrolases, but an N-terminal nucleophile could not be found. Therefore, it is thought that this enzyme is structurally but not functionally similar to members of the NTN-hydrolase family.	2.91124e-59
NC_013165.1\|WP_012799499.1\|2649825_2650629_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225852	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	3.19874e-33
NC_013165.1\|WP_126513903.1\|2653637_2654255_-\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	6.61657e-55
NC_013165.1\|WP_012799485.1\|2632296_2632980_-\|HIRAN-domain-containing-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	4.1759e-13
NC_013165.1\|WP_012799493.1\|2642919_2644434_-\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NC_013165.1\|WP_012799489.1\|2636871_2639685_+\|AMP-binding-protein	gnl\|CDD\|341233	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases. This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	3.12577e-112
NC_013165.1\|WP_012799486.1\|2633282_2634122_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	6.85514e-50
NC_013165.1\|WP_012799495.1\|2646215_2647394_-\|phosphoribosylaminoimidazolecarboxamide-formyltransferase	gnl\|CDD\|180841	PRK07106, PRK07106, phosphoribosylaminoimidazolecarboxamide formyltransferase.	0
NC_013165.1\|WP_050749584.1\|2650644_2651547_-\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	3.21582e-84
NC_013165.1\|WP_126513825.1\|2654439_2655816_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.04052e-34
NC_013165.1\|WP_012799502.1\|2652923_2653604_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.32721e-55
NC_013165.1\|WP_012799488.1\|2635505_2636867_+\|hypothetical-protein	gnl\|CDD\|225208	COG2327, WcaK, Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis].	5.96117e-09
NC_013165.1\|WP_012799484.1\|2631376_2632228_+\|TIGR02452-family-protein	gnl\|CDD\|131505	TIGR02452, conserved_hypothetical_protein, TIGR02452 family protein. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.	2.79407e-33

>NC_013165.1|WP_012799493.1|2642919_2644434_-|alanine:cation-symporter-family-protein
MSLNDTLVQITGNISDLMYSYLLVFLLVACAIYFTARTKGVQFRLLGDMFKQIGEKKHVEGEKSVSSFQAMMISTASRVGTGNIAGVAVAIAAGGPGAVFWMWLMALLGSATAFVESTLAQIWKVRGDEGEFRGGPAYYIQQALHSRAFGILFAIFLILCFALGFNGLQAYNMTSAIQYYFVEQDYKAIALVMGLATAAFFGFVVFGGSKLISTITSVLVPIMAFTYIGLALFVTITNIGLLPQVMSFIFTYAFDFQSLAGGLAGSMILLGIKRGLFSNEAGMGSAPNAAAAASVSHPVKQGLVQSLSVYIDTILICSCTAFMVMVYYVKVAGAGIGGDAGLSGMTLVQYAISNEVGPVGIHFITFAIVCFAFSSMVGNYYYAESNIKFIKNDRIVLTVFRICCMLVILMGCMSSFDLAWNLADITMGLMAIENLIAIVVLGKWAFKALEDYEEQKKAGKDPIYLSEKFEAMGMPHAECWHVDAQHLEQLGGNTIKEYVDEALS
>NC_013165.1|WP_012799492.1|2641566_2642766_-|hypothetical-protein
MANLSPVAIDVLVRLVGVVTDYQSGRRENLTVDAVELNGMLGGRPRVPFGDKEALKDAVAWCRKNNQPLLPALVVIDKGYRKPDSGLLKALYGSKSITDAMSLWEQEIQTIGNLSAGAVAQFRNLIPAKEPESAPRAVRKPAERKTSAPRTAARREKTSAVTSKREAAGVVKQGSAVVTVQSIDAAAFKECFAQFCQYVEDADPGAPLFDNVVVSALEESRLTARDVWLGDLDIPSWTEDMVGTGALVAKIQATIDDDEAPWSRFEGRVPNIAAVLRRKDRQRGNLLFEGPLMSFYKDEMSAEAFLKAMKSLFVRYYGMVSHLLFLKDAQAYVPVDSEAAEAGFRKLGMDLSLSGACTWPSYSRFLGHLGRIQKLLAEEGHPATLQNAYTFLQVIGEMK
>NC_013165.1|WP_012799491.1|2640217_2641501_+|GMC-family-oxidoreductase
MKNAIVIGAGAGGCAAARELVGLGWHVALVERGSEFKPFAYQLKTFEPLRQAGLFVDTRMIQAVFGDMRIDKMDSMPLVRGRGIGGTTHLATANALRYDDDLKALGIDLDDEFDELADLVPQCTNHQRRWSDLTRQTFEAFEAEGFDPRVMPKMVDEDRCVACGKCVLGCKLGAKWTADKLLEGLDQSLVDVMESCTVTKLTCENNHVTGVVCRQGLRTVTLDADLVLLAAGGVGTPKILDRSGIPSKPTFFVDPVLCVAAPWENARFDSEIPMPFASQRDGYILSPYFDFLSFFFDKKWRAPSKDIFSLMIKFADDEVGSVTARTVSKPLTDHDYETMARAVDDCRRIMGRLGIRESDTFYGMLNAGHPGGAYPLTQAEAETLHHQELPDNLYLADSTLFNASMGNPPILTIMALAKKVAKTAAAR
>NC_013165.1|WP_050749583.1|2639681_2640221_+|hypothetical-protein
MSRTIGIRLIESEWFRRMQLRCMTRLFAKAVGAQAPGLSNMDADGMLHAFTSFTVQETARLAGTEAGDAARADLRRRAYNLGRRLAAMPPFSGIDRFELVQALYRNIDITLEGALPGQITMCPCSFSTYYAPSACLFMSAFDEGIMAGIVGEGALTFSCRITEGAPCCTAAFEQEGILL
>NC_013165.1|WP_012799489.1|2636871_2639685_+|AMP-binding-protein
MPETSCHHVLLTGATGFLGTRLAEELVKRGHAVYAVVRPSGQLNAEQRLARLWYENATLKPALGTQVVPLDGCITKHMLGLDETTVDMLCGQVDTVIHAAADVNINQTIEVLRQANVEATGHILNLAERINERRPLHRFMHVSTAYVAGKRSGLIDEESFENRGFNSLYEQTKFEAEELVRSRAESMPVTVLRPAQMVGDSCTGWITSFNTVYYPLKMYLKGMLPIIPVAADQRLNIVPVDYVASIAMAALDSPKAVGTTYHCTMPARLQPTVGDIVETTRGWARLELGVKLQKPVYVSSTELGSLGSNRNLKRASQEKKKGFLSNMLALSPYFNDEHVFSTDNTEKLMGTCTLSWRSILPVMLRYAVDRSFLKHTGRTAFEQMLVRLSSKRSSISYFDVTDEGVRETTADQMKEQVLTLAAALRSVGIRPGDRVALVGVNSSAYTSVDAAIGLVGGVSVPLYYTSPYADIRQFVNRSHAKLLFIGMEKLARAAAEDDPGIPCVLMPPIATLENLPETITPWEVFLGIGRTADDKAKALPAVGYDDIATIRYTSGTTGLPKGTMFNHYQLAWMGQTMPEILDWKTRNAPNRYLSFLPMSHVVEGILVAYAPFYLLSDVEVYCLNDFSKLTETLPKVRPTIFFSVPRFYEKVWNQFAATAAGKRYLAMKPGPAKKAFARICKRAILKKAGLDACRQLIVGSAPIRNDLLEAYRELGIEIHNAFGLTEAPLITLNRMGRNDLGSLGQALPQTDLKIDGTGEIWMRGPQLTVGYDGMGPLPVDDEGYFATGDLGSLSPQGNVVIQGRRKELVVTSYGKNVQSEKIEALVKSIPGVSEAMLVGDGRPYCTGLIWLEDDAELDAQAFDAAILKMNEGLSHPEMLKRWAVMERPLALSSGELTPNLKMRRKVILEHYPQVIEALYDESGLHGAVGAMHIGAMS
>NC_013165.1|WP_012799488.1|2635505_2636867_+|hypothetical-protein
MDRILALIVRFCAFLGRFTNRVSYRPLDSHGADDPLKILLVGYNGARNTGSDVRVASLITQLNDEFGSDRIRMSLMSLDPSSTEPYLAPNVDAIPFDTMFFLPLLKACSTHEVIILCEGSMLKSKFANGLTLFMCEAAGIAKAQHKPCIAYGGEAGDMDAFVSNTARKLCTDAKFIARTEGSREAMRQLGFEAELGTDTAWTFDGAHASEKARDLLVSQGWNGTQPLLGIAVINPFCWPAKPSLGRLAKSALTGTWEQHYQKWYFFSWSEERARAFETYLQKMAQAVEDACAKYGFFPVIIGMEKLDLEACTRLGAMTERPHASILSNNQDGYVISEVIGMLSRLATSRYHAAVLAIKQGICPIGVSMDERLQNLFEDAGISKTLLLSVNDPALETSMAKALDEVSNLSQEKHAELSRYVDDRRALCRRMAVDTKRYLAEFSPLAHDLHLKEA
>NC_013165.1|WP_012799487.1|2634180_2635365_+|DUF2974-domain-containing-protein
MQTILDYLDWRGDLSFTTSPFNEVDNLILSELVYLELDGIVGGLESDDFPTLAQTQKELERRGVKPSSPINNPHILASKAAETDRYRDVRLAWYQSNVDAARQVQYGAVTFFLPDGTVYVAFRGTDSTIVGWREDFNLWYSDSTPGQDHALAYLDAVAGKTQGDLTVGGHSKGGNLAIYAAAFGPYRVRERVRVVYSNDGPGFNKKIIATPQYHAVLPKVRHIIPESSLIGILMANTPIKTIVKSTASGVQQHDPYTWAVLGTSFELADELSSISLFANDTFNRWFTTMDEDSRRTVVNAVFDSWEASGATTVSEFRSMNPSAYAAILKNVADLDADTKREVMDSVGKLFEAGARTFAEGAKNRTKAALEQHVASRIQTSRVQMPALEHQRPQS
>NC_013165.1|WP_012799486.1|2633282_2634122_+|ADP-ribosylglycohydrolase-family-protein
MNNVANCLYGAMIGDIAGSRFEWNATKHKTGYALFDSECCYTDDTAMTIAIARALMASGRDAERFESLAVQELRDVGRRFPHAGYGGSFRRWLKNPNPEPYNSWGNGSAMRVSSCGYAARTLDEALQLAEASARVTHNHPEGIKGAQATAAAIYLARTGADKDSIRDYVETTFEYDLHRTLNDIRPGYAFDVSCQGSVPESIICFLESDSYEDTLRNAISLGGDSDTMAAIGGSIAWAFYLGGKDLAEEPEADLASQADLFLPQEFIQTARQFDEFCLA
>NC_013165.1|WP_012799485.1|2632296_2632980_-|HIRAN-domain-containing-protein
MYGGPFDFNDNGRMDPFEASVGHHVIFDVFGTEGGSDDDAWTTSSRTKPKASSQRKSALDAWLNSSDDDGFNRATDSWNDVLESEYPWTSEPSAASSWCDTIDDEDGDSEDPWAADNDEDEDLYFHTYVAGTKFDNHDVAWSHAEFTYGLEIDLVREPNNEYDPNAIAVYADGLHGGYVPADVASTLADLMDSGWEATASNVRISVDDDREGPYRVRLDIRAHNPCA
>NC_013165.1|WP_012799484.1|2631376_2632228_+|TIGR02452-family-protein
MPTKEERAKQAAKHLAFVNTVFASDTAASIEATVVYEDGDGRELAVPEPRFEATATDATTDFTVTALFKAQGKVAVVDPCAFTKPGGNYVEGAFGPEQVLCADSNLYPILCGLKETYHDANRDYWSGQLFTDRALWIPDVKFTRSGDLRTAGIVAVPAPNRTRALENHRSAAECDQAIKTRIETIMRVAAANGVDTLICNAFGCGFNGNDDTVVAQLFRDWIDAHQGVFENVIFAVPRANFAAFDALFAAPEIEEPVYVPTDEEDEDDFDIYSIELPEGITLR
>NC_013165.1|WP_012799495.1|2646215_2647394_-|phosphoribosylaminoimidazolecarboxamide-formyltransferase
MNELELKYGMNPNQKPARIFMREGGDLPIEVLNGKPGFINFLDAFNSWQLVKELKEATGLPAAASFKHVSPAGAAVGLPLTDLDRKIYFVDQEGELSPIACAYIRARGADRLCSYGDWAALSDVCDADVARYLKLEVSDGIIAPGYTDEALEILTTKKGGKFNVVQIDPEYTPAELEFKDVFGITFQQGHNNFKIDRELLSNMVTENKDLPEQAVIDLIISLITLKYTQSNSVCYVKDGMAIGVGAGQQSRIHCTRLAGSKADNWYMRQHPKVLGLQFVDDIRRPNRDNAIDVYTSDEWEDVLREGEWQQIFKVKPEPLTAEEKKEWIATQTGVSVGSDAFFPFGDNVERARKSGVCYIAEPGGSIRDDHVVETANKYGIAMAFTGMRLFHH
>NC_013165.1|WP_012799496.1|2647405_2648032_-|IMP-cyclohydrolase
MQNLVDILENNPYPGRGIVVGKDRVYYWIMGRSVNSRNRIFVETEDGIRTEAYDPALLADPSLIIYHPVRTMGDALVVTNGDQTDTIVEKGSFRDGCMAREYEPDAPNFTPRISAIINGDGTFELSILKHVDGRCVREFFAYEGVDEGCGYFISTYQGDGNPLPTFAGEPIPVTMPEPDAVWAALNDDNKVSLYTNVAGEVKIFNKHE
>NC_013165.1|WP_012799497.1|2648727_2649021_+|hypothetical-protein
MGSKKRSARAKQVAEFKASLGGMDDVFGREERRRIAASEEKEAALRRKACESKNRYSCKSDADQAILSCAAYGTTGLHAYRCPYCNGWHLTSKPERR
>NC_013165.1|WP_012799498.1|2649204_2649798_+|TetR/AcrR-family-transcriptional-regulator
MPKTTPDIRREAFVQAGIALFTERRYGDVSVRDVLDAVGVRTASPSVFYYYFKDKQSLYRTCIETVASSYVEALEQAFDVDDPLDRQIRAAYKIMADSMARTQGALGAGQPSQPFLLEARERVTQRCASLIEKLLIRENPDMPRHETQTTALFLAGGMGQVMWSWQASHPEGADDRSLDGTMRTLEALTDAFTPHLH
>NC_013165.1|WP_012799499.1|2649825_2650629_+|class-I-SAM-dependent-methyltransferase
MAELNTVSETLFVPLAGRIQISQQKPNILHDAKALELKSRVPAELLNKGKQSQYTLVASASRAANLDRYIQTFRLRHPDGVIAQIGCGLETAFYRNDDGYAVFYEIDLPEVIEFRREVLGETERDRCIPGSAFELGWIKQIRQDFPTAPVLVVAGGLFYYFEKEAVVTLLRQLKNFGPIETVFDTVNSTGMKFMDGYMKQLGHEDAKMFFYVDNAAELGNELDGVLSADEEPYYRSIPRKGLGLDTKFRMVFSDRFNMVKMVHLKLA
>NC_013165.1|WP_050749584.1|2650644_2651547_-|EamA-family-transporter-RarD
MREERTGTLAGLACYILWGLFPLYWKMLVDVNSIEIICHRIIWCFATAIVVCAVLRLHPYRLLSNRRGWAHLLPAALIIATNWGMYIWGVNNGYVVEAALGYYINPLVSVLIGRVAFKERLTPMQCIAVVLCTLGVTYFTVSYGRFPWLAFALAISFGVYGAIKKHGGYPSFEALAVENTITLPIAIGLAITVAHITGTHAFFGDVSSVAGWKTTALLILGGPVTAIPLMLFSAAANKIPLASLGFIQYVSPTLQLIIGVFVFGEPFTLAHAVCFACIWAGLSFVVADAALRYRAGLRAS
>NC_013165.1|WP_012799501.1|2651688_2652927_-|HAMP-domain-containing-histidine-kinase
MTPESISKLRRTFIAIFMVSFFIVICFMGTMSYVAALTSTMQQAERTLDVIIEAGGVAPKVESIDDAPYQQEALEGLRYFAVFFDADGNVRDVDLTHVASIDWDAAVQMADEASSPNELAGLSQKNGYVYKEGATPDGGSIVVFLDYSYQLAIAHNTGVNTVLVSIIALLATFVCVVVLSGWAIQPEVENARRQQKFMTNASHELKTPISVIRANTEVTEMISGETEWTQSTLRQVDRLDGMVRDLMTIARGAEREISEGDISEIDATKVVGESVESFRALASTRGVMLESNLDEHVSVVGTAASLEQLTCLLLDNSVKYCDPLGTISVRLIPQRVGRGCTLMVSNTYADGADVDYKRFFDRFYREDESHENQQGYGIGLSVAESICTRYRGSIKVGWKSGSITFTCVLRGM
>NC_013165.1|WP_012799502.1|2652923_2653604_-|response-regulator-transcription-factor
MSSRVLYAEDTRDLNRAVSAVLKHQGFDVTSCFDGVEASKALASSRYDVVVLDIMMPNRSGLDVLKDMRAEGDVTPVLLLTAKTEVDDRVAGLEAGADDYLSKPFAMKELVARIKSLDRRNTDYGVGNLSFGNVRLNAETFELAACNSVRLSHQEFELMRTLILNTDRDLSADFLLGRVWGAADDADAATVDLYIRYLGSKLQGIQSNVMVKSSEAGYRLVEGDLQ
>NC_013165.1|WP_126513903.1|2653637_2654255_-|GTP-pyrophosphokinase-family-protein
MEALRQEIVTSIKTLGQSLEMESGLSPVDHCVSRIKSEESMREKCRRRGLPETAASALLTIHDAIGVRVVCAFPSDVYLVRDHLRDLPGFEIFEEKDYIREAKSNGYRSLHLILRTNDGRAPAGCALLTPGTPRAGGFFVEVQLRTISMESWAALEHQMKYKKEPSAKERLIVAELKRCADELASTDLSMQAIRDLILEDRNAAR
>NC_013165.1|WP_126513825.1|2654439_2655816_-|MFS-transporter
MIVEQRKFGRIAAVYLAGLLIGGLYVGLIAPLRTVIQADLGFGSSMGIWMVNIYTLFYAALIPVSGKLADIHGRKKVFSVCLLVFAAGALLCGLSQVAGSFVLLLVGRVIQAAGAGGIIPVATAEMGVSAPEEKRGMWLGMAAAVSGISNVLGAAVGSLVVAAVGLDSWGWAFFMCVPVCALLEAGAVLWLPDNDRQVRGRLDIPGSILLVAFLVLLLLGLTGLDFFALKESLGRPSTWVPLATALVLGVAFVLVERSVFYPMFHLEYFTDRNIALLMAASFFVGCVIISMVLIPEFAEAALGAETGSGGYYMAILGVFAVVGPPMGGKIIDKHGAKPVFIGGSLVSAAGYAFLALFVTAHPSVAAMVFGLALVGLGMGFTMGTPLNYLMLHAVPEGESSSAIATMSLIRQIGTTVAPAVFVGFVSAGAGLSGYAGMLLAVAASACIAMLLVALIQEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

336678 : 411914

Lactobacillus_phage(18.18%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012797433.1\|336678_337938_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	5.5e-30	35.8
WP_012797458.1\|338076_339615_+	hypothetical protein	NA	NA	NA	NA
WP_126513712.1\|340177_341209_-	hypothetical protein	NA	NA	NA	NA
WP_012797460.1\|341286_341787_-	hypothetical protein	NA	NA	NA	NA
WP_012797461.1\|341994_343194_+	SAP domain-containing protein	NA	NA	NA	NA
WP_012797462.1\|343653_344172_+	hypothetical protein	NA	NA	NA	NA
WP_169304480.1\|344239_344515_-	hypothetical protein	NA	NA	NA	NA
WP_012797463.1\|344817_345621_-	hypothetical protein	NA	NA	NA	NA
WP_012797464.1\|345796_347608_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_012797466.1\|348172_348733_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_041422643.1\|348707_349583_-	nucleotidyltransferase	NA	NA	NA	NA
WP_012797468.1\|349607_351692_-\|protease	BREX system Lon protease-like protein BrxL	NA	NA	NA	NA
WP_012797469.1\|351706_352030_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_012797470.1\|352034_355430_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_012797471.1\|355435_358858_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_012797472.1\|358870_361441_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_012797473.1\|361448_364991_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_012797474.1\|365002_365605_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_169304481.1\|365604_366150_-	DUF1819 family protein	NA	NA	NA	NA
WP_012797476.1\|366196_366397_-	hypothetical protein	NA	NA	NA	NA
WP_050749497.1\|366866_368213_-	hypothetical protein	NA	NA	NA	NA
WP_012797478.1\|368216_369224_-	hypothetical protein	NA	NA	NA	NA
WP_012797479.1\|369518_369785_-	hypothetical protein	NA	NA	NA	NA
WP_012797480.1\|369852_371925_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_041422645.1\|372476_373064_+	methyltransferase domain-containing protein	A0A2H4J2Z2	uncultured_Caudovirales_phage	8.3e-05	42.4
WP_012797482.1\|373030_374224_+	hypothetical protein	NA	NA	NA	NA
WP_012797483.1\|374633_375074_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012797484.1\|375070_376012_+	slipin family protein	A0A2P1EMF1	Moumouvirus	5.1e-20	26.8
WP_169304482.1\|376507_377971_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_012797486.1\|378046_378865_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_126513860.1\|379044_379608_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_012797488.1\|379611_380574_+	polysulfide reductase NrfD	NA	NA	NA	NA
WP_050749498.1\|380681_380960_+	hypothetical protein	NA	NA	NA	NA
WP_012797489.1\|381373_382342_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.1e-06	28.3
WP_169304483.1\|382578_384429_+	FAD-binding protein	A0A2P0ZL82	Lactobacillus_phage	3.3e-15	23.7
WP_012797491.1\|384467_385028_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_012797492.1\|385456_385984_+	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_012797493.1\|386214_387213_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_012797494.1\|387277_389341_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012797495.1\|389383_390151_-	glucose 1-dehydrogenase	A0A0N9R355	Chrysochromulina_ericina_virus	2.5e-09	25.0
WP_012797497.1\|390698_390884_+	hypothetical protein	NA	NA	NA	NA
WP_012797498.1\|391161_391923_-	SHOCT domain-containing protein	I3VYV9	Thermoanaerobacterium_phage	5.5e-09	29.5
WP_041422444.1\|392743_393361_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	9.0e-18	33.5
WP_041422445.1\|393453_393969_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_126513861.1\|393917_394826_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-46	38.5
WP_012797502.1\|394879_395134_-	hypothetical protein	NA	NA	NA	NA
WP_169304484.1\|395387_395525_+	hypothetical protein	NA	NA	NA	NA
WP_012797503.1\|395532_399201_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012797504.1\|399473_400199_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_012797505.1\|400313_402149_+	hypothetical protein	NA	NA	NA	NA
WP_012797506.1\|402517_402976_-	hypothetical protein	NA	NA	NA	NA
WP_012797507.1\|403006_403462_-	hypothetical protein	NA	NA	NA	NA
WP_012797508.1\|403574_404759_-	AAA family ATPase	A0A1V0SCY8	Indivirus	1.4e-19	35.6
WP_169304485.1\|405078_406071_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_041422446.1\|406314_406869_+	hypothetical protein	NA	NA	NA	NA
WP_126513715.1\|407149_407368_+	hypothetical protein	NA	NA	NA	NA
WP_012797511.1\|408247_408889_+	leucine-rich repeat protein	NA	NA	NA	NA
WP_012797513.1\|409690_410455_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.1e-33	35.8
WP_083762405.1\|410438_411914_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

820857 : 826908

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174259101.1\|820857_821925_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.6e-09	24.5
WP_012797869.1\|821925_822369_+	hypothetical protein	NA	NA	NA	NA
WP_012797870.1\|822641_822845_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	1.2e-14	59.4
WP_012797871.1\|823308_824424_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.0e-43	34.2
WP_012797872.1\|824424_825096_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.4e-35	44.0
WP_126513874.1\|825198_826401_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.7e-106	49.0
WP_012797874.1\|826440_826908_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.0e-37	51.0

DBSCAN-SWA_3

950916 : 957208

Caldibacillus_phage(50.0%)

protease,head,capsid,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012797979.1\|950916_952557_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	3.7e-159	52.1
WP_012797980.1\|952563_952869_-	hypothetical protein	A0A290GJQ7	Caldibacillus_phage	2.1e-12	41.2
WP_012797981.1\|953536_953830_-	HNH endonuclease	A0A0P0HRY0	Lactobacillus_phage	5.4e-21	51.1
WP_012797982.1\|953832_954153_-	hypothetical protein	NA	NA	NA	NA
WP_012797983.1\|954172_955384_-\|capsid	phage major capsid protein	A0A0U4IB53	Exiguobacterium_phage	2.7e-05	22.8
WP_012797984.1\|955376_955949_-\|head,protease	HK97 family phage prohead protease	Q9AZY6	Lactococcus_phage	4.2e-09	32.9
WP_012797985.1\|955957_957208_-\|portal	phage portal protein	A0A290G4I4	Caldibacillus_phage	4.6e-45	32.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013165

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection