CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013132	Chitinophaga pinensis DSM 2588, complete sequence	2 crisprs	PD-DExK,WYL,csa3,cas3,DEDDh,RT,casR	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013132_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013132_1

2887263-2887360

Orphan

Consensus_repeat	Method
AATTAACAATTGAATGCAGCGGAGATGGGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_013132_1

>merge|NC_013132|1|2887263-2887360|CRISPRCasFinder
AATTAACAATTGAATGCAGCGGAGATGGGGGATGTGAGGGAGGTGGAAATTAGGAATTAGGAATTAAGAATTAACAATTGAAGGCAGCGGAGATGGGG

>NC_013132|1|1|2887263-2887360|CRISPRCasFinder
AATTAACAATTGAATGCAGCGGAGATGGGG	GATGTGAGGGAGGTGGAAATTAGGAATTAGGAATTAAG
AATTAACAATTGAAGGCAGCGGAGATGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013132.1\|WP_044218441.1\|2891702_2892146_-\|hypothetical-protein	unknown	unknown	unknown
NC_013132.1\|WP_012790017.1\|2892274_2893258_+\|acyltransferase	unknown	unknown	unknown
NC_013132.1\|WP_012790013.1\|2887939_2889040_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NC_013132.1\|WP_044218445.1\|2894935_2896447_+\|T9SS-C-terminal-target-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639
NC_013132.1\|WP_012790006.1\|2882962_2883709_-\|polyprenol-monophosphomannose-synthase	unknown	unknown	gnl\|CDD\|133062
NC_013132.1\|WP_012790015.1\|2890055_2891594_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NC_013132.1\|WP_012790008.1\|2884561_2885914_-\|peptidoglycan-synthetase	unknown	unknown	gnl\|CDD\|223844
NC_013132.1\|WP_012790007.1\|2883778_2884552_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NC_013132.1\|WP_012790003.1\|2877777_2878602_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378964
NC_013132.1\|WP_044218416.1\|2877171_2877687_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380376
NC_013132.1\|WP_012790012.1\|2887426_2887840_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|376496
NC_013132.1\|WP_012790005.1\|2882073_2882955_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_013132.1\|WP_012790021.1\|2896984_2897197_+\|hypothetical-protein	unknown	unknown	unknown
NC_013132.1\|WP_012790019.1\|2894247_2894451_+\|hypothetical-protein	unknown	unknown	unknown
NC_013132.1\|WP_012790010.1\|2886248_2886578_+\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|274921
NC_013132.1\|WP_012790011.1\|2886672_2887236_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241
NC_013132.1\|WP_012790018.1\|2893254_2893962_-\|hypothetical-protein	unknown	unknown	unknown
NC_013132.1\|WP_044218432.1\|2879244_2882013_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NC_013132.1\|WP_012790001.1\|2876312_2876927_-\|DUF4230-domain-containing-protein	unknown	unknown	gnl\|CDD\|379417
NC_013132.1\|WP_012790014.1\|2889104_2889941_-\|UbiA-family-prenyltransferase	unknown	unknown	gnl\|CDD\|260130

Protein	Function_ID	Function_description	E-value
NC_013132.1\|WP_044218445.1\|2894935_2896447_+\|T9SS-C-terminal-target-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	2.32057e-28
NC_013132.1\|WP_012790013.1\|2887939_2889040_-\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	6.28198e-136
NC_013132.1\|WP_012790006.1\|2882962_2883709_-\|polyprenol-monophosphomannose-synthase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	2.32935e-97
NC_013132.1\|WP_012790015.1\|2890055_2891594_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NC_013132.1\|WP_012790008.1\|2884561_2885914_-\|peptidoglycan-synthetase	gnl\|CDD\|223844	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane].	1.82271e-72
NC_013132.1\|WP_012790007.1\|2883778_2884552_-\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.80283e-40
NC_013132.1\|WP_012790003.1\|2877777_2878602_-\|hypothetical-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	0.004548
NC_013132.1\|WP_044218416.1\|2877171_2877687_-\|cupin-domain-containing-protein	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	6.5307e-75
NC_013132.1\|WP_012790012.1\|2887426_2887840_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|376496	pfam01220, DHquinase_II, Dehydroquinase class II.	6.22342e-81
NC_013132.1\|WP_012790005.1\|2882073_2882955_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.05758e-15
NC_013132.1\|WP_012790010.1\|2886248_2886578_+\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|274921	TIGR04019, hypothetical_protein, bacillithiol system protein YtxJ. Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018), is described as thioredoxin reductase-like. [Unknown function, Enzymes of unknown specificity].	5.0948e-51
NC_013132.1\|WP_012790011.1\|2886672_2887236_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	1.20863e-82
NC_013132.1\|WP_044218432.1\|2879244_2882013_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.23107e-41
NC_013132.1\|WP_012790001.1\|2876312_2876927_-\|DUF4230-domain-containing-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	2.98444e-15
NC_013132.1\|WP_012790014.1\|2889104_2889941_-\|UbiA-family-prenyltransferase	gnl\|CDD\|260130	cd13967, PT_UbiA_5, UbiA family of prenyltransferases (PTases), Unknown subgroup. Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.	6.30193e-14

>NC_013132.1|WP_012790011.1|2886672_2887236_+|UbiX-family-flavin-prenyltransferase
MKHRIVVAVTGASGSIYARQLLNKLQAASAQTDQIALVMTNNARTVWETELGTDDYKQLPFKIYTQQDFHAPFASGSGRFDTMIICPCSMGTLGRIATGISNDLITRAADVVLKERRKLICVVRETPYNLMHIKNMLAVTEAGGIICPATPSFYSVPKSIEEVAATVVDRVLDLAGIEQQTFRWGGE
>NC_013132.1|WP_012790010.1|2886248_2886578_+|bacillithiol-system-redox-active-protein-YtxJ
MNWIPLTTETQLSEIKESSVTKPVVIFKHSTRCSISAVAKSRLERAAAPETISFYYLDLIKFRDISNRIAADFNVEHESPQVLLIRNGECVYDESHSGISMDEIVDHSN
>NC_013132.1|WP_012790008.1|2884561_2885914_-|peptidoglycan-synthetase
MAKVHFIAVGGSVMHQLAIALKIKGYQVTGSDDEIYEPAKGNLLQTGILPASMGWDESRITADLDAVILGMHARADNPELIKAKELGLKIYSFPEYIYQESQQKNRVVVGGSHGKTTTTAMIMHVLQQSGQAFDYLVGARLAGFPQSVNITDAPVIVCEGDEYPASVIEKRPKFHFLHPHIAVLTGIAWDHINVFPTFENYLEQFAIFLRTMKAGHTLIYNNTDPELVKLVKAEGLHLKLVPYDIPQHQINNGVTTVHFGDQQTELEVFGDHNLLNMHAARLVCNELGISDEVFLKAIATFKGAAKRLELVGKNEHCAIYRDFAHAPSKVKATISALRDQYPQRKLIGVLELHTYSSLNADFMVQYQGCMDKADIPVVFYSKHALEIKRMPELMPDVVAQGFGRADLEIFTSREHLTAFLDKQEYKDANLLMMSSGDYEGLDVNSLKKYL
>NC_013132.1|WP_012790007.1|2883778_2884552_-|3'-5'-exonuclease
MPSLQLKRPLAVIDLETTGTNVATDRIIEIAIIKVFPDKSVQTKVKRIHPGMPIPPASTAIHGISDEDIKDCPTFKQCANELRQYMENCDLAGYNSNRFDIPLLVEEFLRAGLDFDTKDRRFIDVQKIFHLMEKRTLSAAYKFYCDKDLTNAHSAEADALATYEILEAQLSRYEQLQAEVAPLAEFTKEDDYVDFARRMVVQNGVEMFNFGKYKGRAVREVLKIEPQYYDWMMKADFPLNTKQKLTEIYHSMMLKKI
>NC_013132.1|WP_012790006.1|2882962_2883709_-|polyprenol-monophosphomannose-synthase
MEKLVIIPTYNEKDNIRNIIDAVFALRQNFHILIVDDGSPDGTGNIVRNLQQSHSGELFLVERSGKQGLGTAYIHGFKWALEKGYQYIFEMDADFSHSPADLNRLYDACAKEGGDVSVGSRYVKGGKTENWPWDRAVLSYGASVYVRFVTWIRVKDATAGFVCYKRQVLEAINLDAIRFVGYAFQIEMKFTAWKLGFKIKEVPITFKDRKEGYSKMSKGIIKEGVLGVLKIQWESLFRKYERRVRNSE
>NC_013132.1|WP_012790005.1|2882073_2882955_-|EamA-family-transporter
MKKALIQLHLSVFLAGFTGILGKLITLNEGMLVWYRLLFTIITLYILFRWRGMLTKLNFKQILPIGLTGMVVVLHWLFFYASIKYSNVSIAVVCFALTSLFTALFDPLINRGRLDKTELLLSGITLLGIFMIFHFDTQYRTAIILGIISAMFAALFTIFNKRLIVKYDPPTITFYELTAGFIGLTILLPAYLYFFPQPLALPSTADLSYLLILAWACTVGMYMLMMNALTKISPFTVNLSFNLEPVYSIVIAFMLFHENKQLTYAFYIGLACIILSVALQMTRVARTLKHSHA
>NC_013132.1|WP_044218432.1|2879244_2882013_-|S9-family-peptidase
MKKLMCVAAFSGLSLLTYAQQPAKKPLDHSVYDGWQSISNKAISNNGQWIVYTVNPQEGDASLFIYNNKTKQRLEVPRGANPVITEDSRYAIFSIKAPFAVTRQAKIKKKKPSEMPKDSLGIVTLGNNNVYKVPAVRSFKTPEKGTGVLAYLKEKPQADTTSGHLVIYYLDKQTADTIRNVQDYIFSKPGNRLLAEVVTEKKDSLSRSAVLLWNVAAHKADTISRGAALRKQFAFDEKGEQAAWCSSRDSVKALQQFYSLYYYRPGQDSGVITADKTNRSFPANWSVSPDGKVWFSENGQRLFFGTAPILPPKDTNIVDFEVARVDIWNYQDDYLQPMQLKNLDKDLKKSYQAVYYPGTQKVLQLADKDMENIQLANRGNSPYALGYTDKGQRVAMQWTGHSLKTSYLVNLENGNRKMLQENLDSVSRISPAGRYITWYNLQQKQWYAYETSTGTTRNITEKIPVSLSEEDDDHPDMPAPYGMAGWLEDDKAVYIYDRFDIWQVDPSGKVAPQLLTAGYGREQKLRFRYVQLDKEERFFTPGQALLLETFNETTKENGFYTTFSTFKKVPVKPELLVMGPYTFGDPIKAENAPDYIFTKSSYVLSPDLYTGTSLAKAEQISHINPQQQEYNWGTAELFKWTAYNGKPAEGILYKPENFDSTKKYPVLLYFYEKLSDGLYSYNPPAPTPSRLNISFFVSRGYLVLAPDVTYENGHPGQGAYDYIVSGARAVATHPWADSLNMGIQGQSWGGYQVAYLITRTSLFKAAWAGAPVANMTSAYGGIRWESGMNRQFQYERSQSRIGATLWDKPELYIENSPLFHLPKVTTPLAIMSNDADGAVPWYQGIELFTGLRRLGKQVWMLNYNNEAHNLVQRQNRKDIQRREQQFFDHFLKNAPAPEWMQTGVPATEKGKNWGWETGPSAQ
>NC_013132.1|WP_012790003.1|2877777_2878602_-|hypothetical-protein
MNFRIYQPATSLAPYVKQYYHLQSTNSGLINLPQNLFSLGDLYMVFLQEGEVIFQPTQHASFTLPEASVVGHFTCHHQIMVKGPVKMTVIQLNAYGCYKLAGLDMSSFNNYFRDLLKQDRECWTELAGTIAAHNDITTLDAVLDNAFTNMMCGQSHNLKQVDEIADYILSTQGYTNIEWLTKKFKLSRHTMERKFMEVIGLTPQLYARMLRFRDAMRHMQRMNVEEWQTFITNNDYYSQALFIQDFLFFKGEVPVLNQETAIAQMPVARPVAVA
>NC_013132.1|WP_044218416.1|2877171_2877687_-|cupin-domain-containing-protein
MQNPRHNAAYWREHLNLQSHVEGGAFKETYRSSWEFKQAVLPPAMKGDRSASTGIYFLLEEGEFSAFHRIAADEMWHFYDGHSLAIYDIDTSGTLTVHKLGLNIEDGEQPQLVIKAGHWFASRVEVPGGFALVGCTVAPGFDFADFELATKDNLRAVYPQHAELIASLVHG
>NC_013132.1|WP_012790001.1|2876312_2876927_-|DUF4230-domain-containing-protein
MKRFFRFVFFIAIAILLFWLGKQFGSKSVNQSILSNSQIVREIAELASLEVQGNATIKRSNITDDGEWTTNLKKAFLENTIWVSVPYTGKYGINVDEKSFKVTVSDKKITVNIPQPKLLSYELKVDKMETSNRKGWFLFQDDETYTDVQRKLYQTSRDQLENNQLYINQSKEKLTKIIRQYYQPFLQDHELEVIFGNSAPVLLN
>NC_013132.1|WP_012790012.1|2887426_2887840_+|type-II-3-dehydroquinate-dehydratase
MQIAIINGPNLNLLGKREPGIYGNESFESYFERLKAQYPDVQLTYFQSNIEGEMINHLHEIGFSYDGILLNAGGYTHTSVALRDAISAVKTPVLEIHISNIHAREEFRHKSMIAPVCVGSICGLGMKGYALGIAYFL
>NC_013132.1|WP_012790013.1|2887939_2889040_-|M42-family-metallopeptidase
MSKKQKSILSKEALTFLRTYLNNPSPTGFEKEGQKLWLEYLKPYIDEQYVDAYGSAVGIINPKAPFKVVIEAHADEISWFVNYISPEGLIYVIRNGGSDQQIAPSKRVHIHTEKGIVKAVFGWPAIHTRLRSTEGKDPQPKVENIFLDCGARNRKEVEDLGIHVGCVVTFEDGFEELNYDYFICRALDNRIGGFMIAEVARMLKEKKQKLPFGLYIVNAVQEEVGLRGAEMIAKRIKPDVAIITDVTHDSTTPMINKNIEGEIRCGAGPSITYGPAVHNILRDLIIDTAKKNDIPFQRHAVSRSTGTDTDAFAYSNDGTPSALISIPLRYMHTTVEMIKKDDIENTIQLIYQTLLNITPKTNFKYL
>NC_013132.1|WP_012790014.1|2889104_2889941_-|UbiA-family-prenyltransferase
MRGLFNFIIFSSIYVACIAIVMIWQTNALLHVQNINRAYYFFVFCATMCSYNFHWYLTPADYSGSERILWGARHKNLQLGLCAVGAIGAMYGFWLLKAHWLALSGAAVLTFLYSAPKLPQKAFIWLRKIAIGKTLFLTTVWIYVTTVMPVLIEQIPYSHHLLLFALHRFFLVYALCILFDYRDLESDKKEGIRSLITWLSPRNLKKLYITSLILSALFALALYPVDNWLLTAVLLAPVLITTLITRYTLKTRSDHYYYFVVDGMVMLSSLLHFIIANI
>NC_013132.1|WP_012790015.1|2890055_2891594_-|acyl-CoA-carboxylase-subunit-beta
MDKFHELQNKIATAMLGGGEARISSQHKKGKLTARERLQLLLDEGSFEEFDMFVHNRNRGMTTDQEQFPGDGVVTGYGTVNGRLVYVFSQDFTVYGGSLSEPHARKICKIMDLAMQNGAPLIGLNDSGGARIQEGVVSLGGYADIFYRNTRASGVIPQISAIMGPCAGGAVYSPAITDFILMVEETSYMFVTGPNVVKTVTHEEVTAEELGGAHTHAAKSGVTHFACGNEVECIRNIRQLLSYMPQNCEEDAPVYPYEAGDEIRSSLNTIIPPSSNQPYDMKDVISELTDADSFLEVHKDFAENIIVGFARIAGRSIGIVANQPAHLAGVLDIHASVKGARFTRFCDAFNIPLLVLVDVPGFLPGTDQEWNGIITNGAKLLFALSEATVPKITVTTRKAYGGAYCVMNSKHIGADLNFAFPQAEIAVMGPKGAVEIIYKKEIDAAPDPEARMNELVTEYTERFANPYLAAEKGYIDEVIVPDQTRIKLIKGYAMLENKVVSMPRKKHGNIPL
>NC_013132.1|WP_044218441.1|2891702_2892146_-|hypothetical-protein
MKKILVLSLFAVAAICGACGKDSIGTKPMLTFLSYSYSPVISSIGMDVNFQVKDGDGDIENSFNFAAIYDTKPVDTAFESRPMPGVEAHKGTNLTAEVILHLQPTDFPQTGDQPILKDSLHYLVFITDNAGNISDTIVTPKIEVLYQ
>NC_013132.1|WP_012790017.1|2892274_2893258_+|acyltransferase
MSGINTAALFTLQEQDTEAAALELFRYQYRENDIYRAYTDALHRKPSEIRSLLQIPFLPIQFFKTHTVTCGSFAPELVFESSGTTQTINSRHLVKEAAVYEQSFLAGFERFYGPVSDFVVLGLLPSYLERQHSSLVYMVQDMVKRSGHAESGFYLYEHDKLAAHLQELEARQQKTLLIGVTFGLLDFAEHYHLQLENTIVMETGGMKGRREEWTRQQVHGYLKERLGCKQIHAEYGMTELLSQAYSYGDGLFTTPPWMKILVRDENDPFQLSAANAAGVINVVDLANVYSCAFIATDDIGKLRADGSFEVLGRLDNSALRGCSLMVS
>NC_013132.1|WP_012790018.1|2893254_2893962_-|hypothetical-protein
MKDKLPYITSTYFISLIKAYLQGHKTKPEILAETADLLPPAAHHEVSQLLTAAAHQMNDAFYADIVDSIQHTSGTVPTRKGLIHHLEALLNKQISVQELLDWATWYTLEEDQLSAGIMDDFAVEYFCFDFLPAHHAELTDAQFRQVLQLFRAIPENTLKEKIALALIIDKERQHFLYFLRSFLEQPQHTDALNTYLMAKFGMDHRSFPYIQELLAIQSQPEKLEALLEKARLSAV
>NC_013132.1|WP_012790019.1|2894247_2894451_+|hypothetical-protein
MAVRDRSIGSTGLEQGGPNLGNDYSRDITREKTADDTLKVIIPKDKKESSEKNKDKRDLERRDKENR
>NC_013132.1|WP_044218445.1|2894935_2896447_+|T9SS-C-terminal-target-domain-containing-protein
MILLLSCLLNVASAQHLTLRNSSLEGKPGVKVAPTGWLVAANTPDVLPGVMGVFKSANAGSTFVGLQGGPVYREGIEQELTEPLVEDRTYSMSFDLAFNEMYGHKHCYGNLAIFGGSAPGDTAELLWTSGSFTDTAWRRWNAIFTPRQTHNYIALYAYPAETCPTSSFGVLVFVDNLSTIRQILRTELTATASCKNEGTGSVQVKVKGGAEPYTYLWTPGNYTTSQVSDLLPGMYSVTVTAANGVTAKGAVEVSASDLQTEKAVTISDCAGENKSAIALDISGGLPPYDLSLNGEETHARTFNHLRPGNYVFVLKDQQVCRDTFNIFIQEPAPLVINKIATEPCSCSEVNDGIIRWEVDGGTRPYKYRVNGEAWQPDSLQRNLKAGDYRYEVEDANGCADGGNTVITSPNQHCFVMMPSAFSPNSDGSNDVFRPRIYDAVTNYRLSIFNRWGSLVFQTSDPKAGWDGYSRGVAQTPQSFVYVCTFTTSKNEPKEYRGSVMLVK
>NC_013132.1|WP_012790021.1|2896984_2897197_+|hypothetical-protein
MAEHRVFFELPTTELGKADATFQVKKDGKILGTIHISHGALEYQPNGFMKKNSIKIDWTKFDKLMRDSLQ

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Crispr_ID: NC_013132_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013132_2

8652627-8652737

Orphan

Consensus_repeat	Method
TGGTTGTGTACCTGTTGGTGTCGTCTGCGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013132_2

>merge|NC_013132|2|8652627-8652737|CRISPRCasFinder
TGGTTGTGTACCTGTTGGTGTCGTCTGCGCTGGTTTGGTCTGCGCTGGAGAAGATGGCTGTGTGTTGGCAGACTGCGTTGGTTGCGTACCTGTTGGTGTCGTCTGCGCTGG

>NC_013132|2|2|8652627-8652737|CRISPRCasFinder
TGGTTGTGTACCTGTTGGTGTCGTCTGCGCTGG	TTTGGTCTGCGCTGGAGAAGATGGCTGTGTGTTGGCAGACTGCGT
TGGTTGCGTACCTGTTGGTGTCGTCTGCGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013132.1\|WP_012794474.1\|8654048_8654693_-\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NC_013132.1\|WP_187294796.1\|8656928_8657918_-\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	unknown	unknown	gnl\|CDD\|274625
NC_013132.1\|WP_044220375.1\|8668055_8669189_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133035
NC_013132.1\|WP_148230859.1\|8648590_8649514_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|236981
NC_013132.1\|WP_012794476.1\|8656161_8656743_-\|hypothetical-protein	unknown	unknown	unknown
NC_013132.1\|WP_012794481.1\|8665628_8666708_-\|LptF/LptG-family-permease	unknown	unknown	gnl\|CDD\|367632
NC_013132.1\|WP_187294724.1\|8644882_8645233_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_013132.1\|WP_012794469.1\|8647281_8648451_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237660
NC_013132.1\|WP_012794479.1\|8661902_8664014_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NC_013132.1\|WP_044223136.1\|8654729_8655413_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NC_013132.1\|WP_012794471.1\|8649519_8651286_-\|von-Willebrand-factor-type-A-domain-containing-protein	unknown	unknown	gnl\|CDD\|238742
NC_013132.1\|WP_012794480.1\|8664113_8665433_-\|citrate-(Si)-synthase,-eukaryotic	unknown	unknown	gnl\|CDD\|181961
NC_013132.1\|WP_083781185.1\|8638242_8643117_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|188093
NC_013132.1\|WP_012794482.1\|8666730_8667861_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_013132.1\|WP_012794465.1\|8644273_8644744_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239316
NC_013132.1\|WP_012794468.1\|8646658_8647216_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NC_013132.1\|WP_012794478.1\|8657958_8661651_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225828
NC_013132.1\|WP_012794464.1\|8643169_8644207_+\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	unknown	unknown	gnl\|CDD\|274625
NC_013132.1\|WP_012794467.1\|8645317_8646490_-\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NC_013132.1\|WP_012794472.1\|8651584_8652130_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707

Protein	Function_ID	Function_description	E-value
NC_013132.1\|WP_012794474.1\|8654048_8654693_-\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	2.36877e-48
NC_013132.1\|WP_187294796.1\|8656928_8657918_-\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	gnl\|CDD\|274625	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that have type IX secretion systems (T9SS) and exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.	6.70904e-46
NC_013132.1\|WP_044220375.1\|8668055_8669189_+\|glycosyltransferase	gnl\|CDD\|133035	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.05512e-63
NC_013132.1\|WP_148230859.1\|8648590_8649514_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	5.8219e-138
NC_013132.1\|WP_012794481.1\|8665628_8666708_-\|LptF/LptG-family-permease	gnl\|CDD\|367632	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this.	3.08787e-49
NC_013132.1\|WP_187294724.1\|8644882_8645233_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.01612e-06
NC_013132.1\|WP_012794469.1\|8647281_8648451_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237660	PRK14289, PRK14289, molecular chaperone DnaJ.	0
NC_013132.1\|WP_012794479.1\|8661902_8664014_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_013132.1\|WP_044223136.1\|8654729_8655413_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	6.63721e-56
NC_013132.1\|WP_012794471.1\|8649519_8651286_-\|von-Willebrand-factor-type-A-domain-containing-protein	gnl\|CDD\|238742	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known.	1.8147e-65
NC_013132.1\|WP_012794480.1\|8664113_8665433_-\|citrate-(Si)-synthase,-eukaryotic	gnl\|CDD\|181961	PRK09569, PRK09569, citrate (Si)-synthase.	0
NC_013132.1\|WP_083781185.1\|8638242_8643117_+\|PKD-domain-containing-protein	gnl\|CDD\|188093	TIGR00864, PCC, polycystin cation channel protein. The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.	5.50213e-25
NC_013132.1\|WP_012794482.1\|8666730_8667861_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NC_013132.1\|WP_012794465.1\|8644273_8644744_+\|redoxin-domain-containing-protein	gnl\|CDD\|239316	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.	5.05344e-55
NC_013132.1\|WP_012794468.1\|8646658_8647216_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	2.31906e-43
NC_013132.1\|WP_012794478.1\|8657958_8661651_-\|PKD-domain-containing-protein	gnl\|CDD\|225828	COG3291, COG3291, FOG: PKD repeat [General function prediction only].	3.91051e-20
NC_013132.1\|WP_012794464.1\|8643169_8644207_+\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	gnl\|CDD\|274625	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that have type IX secretion systems (T9SS) and exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.	5.63411e-37
NC_013132.1\|WP_012794467.1\|8645317_8646490_-\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.34261e-126
NC_013132.1\|WP_012794472.1\|8651584_8652130_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	5.32594e-59

>NC_013132.1|WP_012794472.1|8651584_8652130_-|hypoxanthine-phosphoribosyltransferase
MSVIQVHDKQFEPYISADQLQQRIKELATALNNDLKGEKPLFIAILNGSFMFAADMFKYLTIDAEISFIKLASYKGMKSTGNVVQAIGLDEDLYGRTVVILEDIVDTGKTLSQFLPQLEHQQPKKLMVAALLTKPEAMVHPIKIDYLGFSVPNKFLLGYGLDYDGLGRNLPEIYKLVETTN
>NC_013132.1|WP_012794471.1|8649519_8651286_-|von-Willebrand-factor-type-A-domain-containing-protein
MQRLLTLLASLIILVPGSAQKIWISGAVEDSISHNPLAGVIVTVVNDTARVITNQYGLFRIAVPSQDATLLFQHSKYFPKQLSAGAYSRMLVQMNAQEDPAEDAVKKAKAIARERSSNGSNPNYGNALMGTRAFFDETYGTLYENKFIAAETQIPSLFAVDVDRAAYSNIRRFVKLKERIPANAVRIEEMVNYFHYSYPLPPVGQTLAIYSNYATCPWAEDHRLLQIAVRGKSVNLDSLPPSNLVFLIDVSGSMAMPNKLPLLQAAFRILVNNLRSNDHVAIVAYAGVPGVILPSTPGSAKSKILNAIDYLSAGGATAGEAAIKLAYQIAEENFIKEGNNRVILATDGDFNVGQTSDHDMEQLILGKKETGVLLTCLGFGMKNYKDSKLETLSSKGNGNFAYIDNLEEASKIFAREFGSTLFTVARDVQADVVFNPRTVKSYRLIGYENKVIKDDDSASQIGGGIIGAGHCAVAIYEIVPQKGLMPADSMLAAVHLAYRETTDTTIKRLFYKVPDIFTTFQQSSDDFRFASAVALMGMLLRKSGYKGSGSCDMVMDIARRSLGDDPGGYRREFITLLKDLKKSKNLEK
>NC_013132.1|WP_148230859.1|8648590_8649514_+|class-I-SAM-dependent-methyltransferase
MLENRLLKVYKHLRKTARRQNITCFRVYDDDIPEFPFSIELYEDHIYVAEYHRQHGMDEEAHEEWLDLCLEVISKVLEVPLEKIFVKQRQRKASRQEQYEKLSFESHEMVANEAGLKFKVNLSDYLDTGLFLDHRITRGMVREQSAGKKVLNLFCYTGSFSVYAAAGNAAQVTSVDLSKTYLAWAEENMKLNDFDVSKHQFVHADVLQYLDTLPAETFDLVVLDPPTFSNSKRMKEFLDIQRDHVSILNKVLAATRPGGVIYFSNNYRRFVLEADRILASEIKDITSQTIPFDFQQKLIRKCYRIVR
>NC_013132.1|WP_012794469.1|8647281_8648451_+|molecular-chaperone-DnaJ
MSTKRDYYEILGVAKSASQDEIKKAYRKVAMQYHPDRNPDNKEAEEKFKEAAEAYEVLSDTDKRAQYDRFGHAGMGNRGGFGGGGAGMNMDDIFSNFGDIFGDDIFGSFFGGNRGGGGAGGRRGRGTRGSNLRVKIKLTYEEIAKGANKKIKVKKYVPCSHCSGLGAKDKNAFQTCGTCGGSGQVRKVTQTFLGQMQTVTTCPTCHGEGQTITSKCGHCKGEGRVYGEEMVNIDIPAGVQEGMQLSLSGKGNAGERGGAPGDLLILIEEEPHPELQRDGLNVAYDLYISFPDAVFGTSLEVPTIDGKAKIKIPAGTQSGKIFRLKGKGFPSVNSYEKGDQLIHVNVWTPQQVSGEEKAFLEKVQSSDNFKPNPEKSEKGFFEKVRDIFS
>NC_013132.1|WP_012794468.1|8646658_8647216_+|nucleotide-exchange-factor-GrpE
MQTNGQDTENGKGMPDINAEENLGGTTNLNDALADESELDKKQQELNEMRDKYLRLVAEFDNFKKRTAKERIELMQTANKEVIISLLDVLDDSERATKQIESAADINAVKDGVALVFNKLKSTLQAKGLKPMESLHTEFNPDLHDAITEIPAPSEDLKGKVIDDMQKGYYLNDKLIRHAKVIVGK
>NC_013132.1|WP_012794467.1|8645317_8646490_-|class-I-SAM-dependent-rRNA-methyltransferase
MTKVFLKKKIQNRVLQGHPWVFGNEVGQIEGPVTAGDTVDVFTHQGFFVGRGYINPQSQILVRLLTRDKDEQIDAEFFYRRLLKAWKYRQQLGYVENCRLVFGEADEMPALVIDKFNDHFVIQTLALGMDRWKGAIVDALNRIFSPKGIYERNDVPVRELEGLEQQKGFLSAPFDTNVIINENGLKFHVDIENGQKTGYFLDQQDNRRAIQHIVKGADVLEAFCYTGTFSCHAGHYGAKSVLGLDISEHAVNTARRNAELNNLQDICKFQAVNAFDVLKQWTREEKKFDTVILDPPAFTKSRENIQKAITGYKEINLRGMKLLKPGGFLVTASCTNLVPPSLFLEIIDMAAKDAKKKLRQVTFQTQAQDHPILWNIENTTYLKFLIVEVQ
>NC_013132.1|WP_187294724.1|8644882_8645233_+|T9SS-type-A-sorting-domain-containing-protein
MWKTSTLLFSCFFCLLSLVGKAQSAKTTPFSDGGSKVVKAYPNPASSRINFELQNNNEQGYEIIVFNFLGKRIDQIKNLNTRTTVELDKYYSGLYIFQLRDKQGNLVESGKFNVVK
>NC_013132.1|WP_012794465.1|8644273_8644744_+|redoxin-domain-containing-protein
MNVTVGAKAPSFSLLNTEKQKVSLEDFKGQNLVILFFPLAFTSVCTAELCSIRDNIGTYNDLNTAVVGISVDSPFTLGKFKAEQNLNFPLLSDFNKDISQAYGAFYENFVLDLKGVSKRSAFVVDKEGVVRYAQVLESAGDLPDFEAVKNTLNGLQ
>NC_013132.1|WP_012794464.1|8643169_8644207_+|PorP/SprF-family-type-IX-secretion-system-membrane-protein
MRMTCRKLLVALCLCSTQTLVAQDIHLSQFYETPILRNPALIGLFHGDYRIQAVYRNQWNSVTIPYQTGALSAELKFPVGNSEDFVTAGLQFTYDRAGTARLQSVQVLPAVNYHKSLSQDRNMFLSVGFTGGIVQRQFDQSKVTFNNQYTGGQFDPTAPTGEEGRLALRGYSYLDAGAGLSFSSSLGENEDINYYIGAAIFHFNRPKLSFYKDATVALDPKFTVNAGITLPLQERLKLIAQYNEIHMGTYAEYLGGALLGYSLYDEGLESTRAFYVGAYMRYKDAIIPSFRLDMEKYEVGFTYDVNISSLKPATSGFGGFEVSLVFKGFLNSRNSTMDAVHCPRF
>NC_013132.1|WP_083781185.1|8638242_8643117_+|PKD-domain-containing-protein
MRHHYLSQFKHFLLATAYMVVFLLLCGAKTQAQNTVAFTADNWSGCGAAFVQFVNQSTPVGTASWDFGDGGARSTLWNPSRTFNRPGVFNVVLTVTFPNGQVSSTQHVVNVYRRPNVVFTATPTTGCTPLTINFRDQSSAGDGTITGISWDFGDGTGANGATASHTYNKGGGMIATSIVTNSFGCTSSAEQILDIKPTPQVSFTTNTQGGCRTPVTVNFTNTTTMNTAGPVPTVNYLWDFGDGSTSTDMHPTHDYTTTGNFSVKLTASTADGCTQTINMPDYIKIATMQADFNILEKTCTGTNITFRNTTLPAPVSATWTFSDGTVINAVNAVRSFAAAGNYTVTMHAVTQDGCDALVTRSFTVSTPPTVNFTMNPTSACAVPVNIQFTTTSTNANGWAWTFGDGSTAIIQNPLHNFTTEGVYPVKVVASNASGCLDSAINSITIRKPVLTITGLNRGCVPFDASLTANIDVADPIVSYDWDFGDGGSSTNSVGTHTYTAQGNYVVRLNITTRGGCTQTATYPIRVGTPVIPDFSVDKPNGCQPTIFNFTDLSRPQVPGMTWQWTFVENGAANGGSSVQNPSYVFTTIGTHDVILTVDNNGCTRTITKLAFVEVYPPAAFFTIADVDCSRPLTRVFTDATAWGTTPTPRSYSWDFGDGTTDNTPNPTHTWANEGTYTVVLTVDNGSCTSTYSTTVRILNDKPSITVDQNVICRGTTVNFATTSLIPGLTTSYQWTFGDGGTNAGSPTPAYTYSQPGTYKAALTTVDIYGCTHVSDSLTIDVNGSVAAFSASARRCRDTSITFTDESTTRAGNTITSWTFNFGDGTPRQTFITQPVAIPHSYGVINNYPVTLIVTDNTGCTDSITHVITIDNIAAKFSAPDSIACLNTPFRFNNESITEPLTYAWQFGDGGVSTDKNPTHTYTIPGTYTVILDVTSTTGCTGHIETKDFLRVPNPVADFEVPAVAGDICPPVKVQFTNHSSDYVKVSWSFGDGSSSDEDNALHNYIRPGNFPVTLTVYSEGGCASPTAGPKNISISGPDGSFSISQERGCVPLTTSMTAVSPTAQKFIWDFGDGYTVTTTTPASPSYTYTQPGIYFPAVLLEDQRGCTVPAIGNPKVVVDQIKADFGYDLSNACDGGIVQFSDSTKGVSIEDGSPATYLWDFGIPGRTDDVGTGPNPSFLYDAPGTYTVKMIVTSYYGCVDEITKTLIIEPNPYPEIDSVPPVCVGTPIQLSGREIRNLPGTIWNWTTNGQDYPGQVPDSVTYDQPGIYPVQLTIISAKGTCSATVTRDITVAPYPTLTPTPAESSICRGESVNLRVFTEPGADITWTNYNISDPKSATPVVTPDIDTTYRVTVVNATGCAAKGSVKISVSQPFTIQASNADICEGGSVQLHASGAVSYKWSPETGLDKSDVDNPMVTPESTISYQIIGYGNDNCFTDTATATVTVHSAPIINAGDDLSVPVGTTIQLPVTGSTDITKIEWTPAASLSCADCLTPTASPRENTTYLITVTNAFGCTSSDDVTVNLVCSSGVVFLPNTFSPNNDGQNDLFYIRGKGIKVAKSFKIYNRWGQLVFERTNFNIEDPTYGWDGRMNGQPANPDVFVYVAELICDSNEEFMLKGNVMLIR
>NC_013132.1|WP_012794474.1|8654048_8654693_-|O-methyltransferase
MDIIPAAVETFAERYTSPETDLLRRLNRETYLKVDQPHMLSGHLQGQFLSLVSHMLQPQRILELGTYTGYSAICLAQGLKEGGILHTIDINEEREDMCLRYFEEAGLSEKIRMHIGKAADIINGLDEVFDLVFIDADKAGYERYYDQVWDKIRPGGFVLADNVLFHGETLEEPSKQSNNARAMISFCEKVAADGRAEQLLLTLRDGLLIIRKIG
>NC_013132.1|WP_044223136.1|8654729_8655413_-|TIGR00730-family-Rossman-fold-protein
MHLKERDWTETKAHSSWQIFKIMAEFVDGFESLAKIGPCISIFGSARTKAGSRYYELAHDIAKRLAEEGFGIITGGGPGVMEAANKGAQEAKGKSVGVNITLPHEQYPNPYIDHDKNMHFDYFFVRKVMFTKYSQGFIMMPGGFGTMDEFFEVATLIQTKKMTDTPMVLVGREYWSGLLDWIRSTMMEKESNIYPEDLGLLKLFDTADEVVEYFRVFYTTNKLRPNF
>NC_013132.1|WP_012794476.1|8656161_8656743_-|hypothetical-protein
MKRLLLCILLLSAAQLTQAQYYKTDTASKKNFDASRLIIGGSLGLSFGDYTNINVSPLIGYRISQLFAAGLAINAQYGSERFRDYYGNTGQRNQYSIFGGGLWGRVYPLDFIFVHVQPEYNYVSLKSTFYDTDPKTVVKDSYGVPSLLMGGGYSQPLGDRASFSIMALYDVLQDSRSPYQNGLILRVGASLGL
>NC_013132.1|WP_187294796.1|8656928_8657918_-|PorP/SprF-family-type-IX-secretion-system-membrane-protein
MLLAAALEGNAQDLHFSQYFNSPLTTNPANTGFIPDGNYRLGVNYRNQWSSIPVPYKTMSAFGDFQLFRDRLEYGWLGVGGVILRDVAGSGNLTSTKVYGSIAYHQLLGQSSLLSLGFNVGSASKRVDVSKLTFGDQWNGKFFDAQVPTAEPFSQTSIGYFDMQVGMNYAYFPTDNIYINAGFSAQHVNTPRESFYEGNNQIPRRYIGFLNASIKMSDMVILNPSAYYGRQAGATETVFGGNVAYNLSGDGENQLYGGAYYRMKDAAVFLVGYELKSVKIMFSYDATTSSLAQFNGRRGAYEIGIVYTGLYPNRSFSGGRRSVICPSFR
>NC_013132.1|WP_012794478.1|8657958_8661651_-|PKD-domain-containing-protein
MNFTFPIGCLAFLFSLFSGVTASAQAQVQEFYDNKPLQFTENKGQWNGDFLYKTDMGGGAAFLKRTGFTFLLQDKQQRYALAEKMHGHSHGGGDTTWHHDPSPRNDNARTSAAAGSTENSGGENVDVPVPTVRGHAYEVTFLNAGNPEISAEKASETYYNYFIGNDPTKWQSNIKSYQLVNYKGLYHGIDMQVYSEASVLKYDLIVQPGADPSLIQLQYTGADKLEIKKEQLIITTSVGTVTEQMPFAYQYIDNQRVSVKVSYVLNGQKLRFKVSGKYDDNYPLIIDPSYIFSTVSGSTADNWGFTATYDGAGNFYGGGIVFNVGYPVTPGAVQSTYANGGFDIGISKFSSNGRNLLYATYIGGGGKEQPHSLFVDPAGNLVISGRTNSGNYPGPNRGQPTLVGTRGGWDIAVTKLNATGTGIIGSMIVASPGDDGMNMREDRTLGASVLLRNYGDDARSEVVIDNAGNIYVASCTRSDRFPVTAGVFQSSFGGVQDGVLLKIDPNCANLLWASYIGGSREDAAYVLALNGTNTIYVAGGTASNNFPIRGNPLYGTYRGGICDGFIAHVSADGATLLQSTYLGANTVAADQVYGIQLDSRGFVYVMGTTEGTWPIVQPTGTTTFYNNDSRQFIAKLQPNLSAFVYSTTFGKAASTPSISPVAFLVDRCENVYVSGWGGGIDVQLHYPNSNTGGLPLKNPLQRTTDTQDFYFFVLQRDATDILFGSYFGGNGTYEHVDGGTSRFDRNGVIYQGICAWCPTSESGFRPRYPTTPGAYATSAPPNCNLGALKIAFNLDGVKAGIKTLERRTNYCVPATIEFIDTTGTPAQTWTWNFGDGSAPVVGTADTTRHTYQNAGNYRVTLVKCDPASCNGCDTAFLDLRIRTDRATFDMEAVRQPPCEALSYQFNFTAPTPPRPFTSTSFDLNFGDGTPTVKVGPNDFPYLHRYQAEGVYNATLTLVDTNYCNAPEIDTVPLRVAANVRASFIAPDSTCVPATIEFQNTTSGGETFSWNFGDGGTSTDVNPVHIYNTPGVYTVTMQAVDNNTCNRTDDTSMVITVFAPPTADFTYSPTTPTENTPTTFSNQSSPDAVKFLWEFGDGDGSTAVNPVYQYNRTGVYDVYLISTNSAGCSDTAHKQVSAIVIPLFDIPSAFSPNRDGVNDVFLVRGFGISRFNMKIYNRWGQMVFETNDALIGWDGTFKGSLQPMDAYAFVINVEFSDGTSATKNGSVTLLR
>NC_013132.1|WP_012794479.1|8661902_8664014_-|ATP-dependent-DNA-helicase-RecG
MDFRNAILSNPIEYLKGVGPQRGELLRKEIGVHTFRDLLYYFPFRYVDRTNVEKIISLHMQMDYVQIRGKITRMEVIGDKRAKRLVATLRDETGEISLVWFQGWQWVEKSLQTNVAYLVFGKIAVFNGYLQMSHPEMDLVTEETATGKQFLEPVYYTTEKLKARGLTAKAIGKLTKNLLEQLSPGEIPENIPTSILQQYRLMDRAKAHFKIHLPVNEDDANLARRRLKFEELFIAQIRICRLKIRRQQSSRGFVFNTVGDAFNTFYNEHLPFTLTGAQKRVLKEIRQDTATGRQMNRLIQGDVGSGKTMVALLTMLLAVDNGFQACLMAPTEILSQQHYKSISELLEQMPVKVALLTGNVKGKARKQILKAVEEGEIHILIGTHALLEPQVVFKNLGMAIVDEQHRFGVAQRARLWQKNTMPPHILVMTATPIPRTLAMTVYGDLDVSVIDELPPGRKPITTVHRTEFQRPQVMDFIKEEIRKGRQAYIVYPLIEDSETLDYENLMKGYEEVKAFFPEPQYYISMVHGRQPVDMKETNMQRFVKGDTQIMVATTVIEVGVNVPNASVMVIESTERFGLSQLHQLRGRVGRGAEQSFCILMTGNKVGADSKERIQVMVQTNDGFVISEKDMELRGPGDIEGTRQSGLIDLKLADIVEDRPILEAARASAEKLLQEDPDLSMPENQSLQQFLAAQQGKSQWSKIS
>NC_013132.1|WP_012794480.1|8664113_8665433_-|citrate-(Si)-synthase,-eukaryotic
MGYIKEKFKVKADELNAEVKDLVKNHGDMKIEDVTLAQVYQGMRGITGLVTETSLLDANEGIRFRGYSIPELREKMPKVKGGAEPLPEGLFYLMLIGELPEEADVQHLSNQWARRSHVPNHVFAAIDALPVSAHPMTMFTVGVMALQTESTFAKAYAEGMNKKDYWSYMYDDSMDLIARLPRIAAYIYRRKYKNNVHIQPNGLLDWAGNFAHMLGYEDEGFKELMRLYMTIHADHEGGNVSAHTTHLVGSALSDAYLSFAAGMNGLAGPLHGLANQEVIKWILEMREELGGGSPTKQQIEDYVRKTLSEGKVVPGYGHAVLRKTDPRFTAQMEFAKKHLADDELVKIVWLVYETVPPILESLGKVKNPWPNVDAHSGALLVHYGLVEYEFYTVLFGVSRALGVLASLCWDRALGFSLERPKSVTTEWMKQFVAGKVEAE
>NC_013132.1|WP_012794481.1|8665628_8666708_-|LptF/LptG-family-permease
MTKIDWYILRKFIGTFIYSLMILLVISVVIDVTEKIDDFMSNNLSFYTIVVDYYFGFIPHIAALLFPLFIFISVIFFTSKMAYRTEIVAILCSGVSFRRFLRPYWVGAFLFGGLLWLGNRWTVPVANKIRTKFEAEYVHKKKAQLNMYDKTIRVDSFTYVTFGSYDPNYKSGSNFLYEDVRGQNIKFKMKADRISWDSVAGKWKLDYVTMRAINGLKERWWSKTDTTIKIPLNPKEMYEEKNIQEAMTTPELDTYIAREELKGAEGLNTFYVEKYRRTASSGAVVILTLIGGIIASKKVRGGSGLHLAVGIVISASYIIFLQFSTVFSIKADLNPLLAVWIPNFLFGGLAFWLYLRAPK
>NC_013132.1|WP_012794482.1|8666730_8667861_-|tRNA-guanosine(34)-transglycosylase-Tgt
MIFELITTDSNSKARAGLITTDHGKIETPIFMPVGTVGSVKAVTQEQLRDDVKAQIILGNTYHLYLRPGMEVLSQAGGLHKFNGWERPMLTDSGGYQVFSLAANRKIKEEGCLFQSHIDGSRHLFTPENVMDIQRTIGADIIMAFDECPPYPSEYRYAKKSMELTHRWLDRCIKRLAETQPVYGHEQTLFPIVQGSTYKDLRTISATEIAARECAGNAIGGLSVGEPEQDMYEMCGLVCDILPTEKPRYLMGVGTPWNILENIALGVDMFDCVMPTRNGRNGMLFTWNGVINIKNKKWATDFTPIDENSPCFASNRYTKAYLRHLFVAGEILGMQLASIHNIAFYLELVQEARKQILAGNYASWKNSMVPQLKQRL
>NC_013132.1|WP_044220375.1|8668055_8669189_+|glycosyltransferase
MLYNLGLIAFYAFATVAAIQILYYLIFFSRVAFYRRTFESEVDPDAECSVIICAKDEELNLQKNLPAVLQQRYHGKKKPAYEVIVVNDNSEDDTKYYLRSIEPGYPHYRHIEIKQAAKFIPGKKFPLSMGIRTAKHENILLTDADCKPSSTYWLSLMSQGFTDGKEIVLGYSPYEKKPGLLNKVIRYETYFSALQYLSFALSGITYMGVGRNLAYKRELFNRHKGFTAHHHIASGDDDLFVNAAATRHNVSVVIDKQAFTYSEPKTTWKKWFQQKTRHMSTGKHYRFGHKVLLGLFSLTHFLFYPLFIGCLFYEPLRIYTLSVFGGKLLLQSVISFMAMRKLDEGDLFKFSWFMDFFMFVYYLFLTPALMFKSKNRW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1385734 : 1392341

Caulobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012788836.1\|1385734_1387027_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	6.1e-149	62.8
WP_012788837.1\|1387102_1388014_-	gliding motility-associated ABC transporter ATP-binding subunit GldA	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-25	30.5
WP_012788838.1\|1388331_1388907_+	TerD family protein	K4JRX3	Caulobacter_phage	2.1e-32	41.5
WP_012788839.1\|1388943_1389612_+	TerD family protein	NA	NA	NA	NA
WP_012788840.1\|1389637_1390276_+	VWA domain-containing protein	NA	NA	NA	NA
WP_012788841.1\|1390277_1390988_+	HAD family hydrolase	K4JW67	Caulobacter_phage	1.4e-14	31.7
WP_012788842.1\|1390962_1391853_+	phosphoribosyltransferase family protein	A0A291LAE0	Escherichia_phage	1.1e-32	31.5
WP_012788843.1\|1391786_1392341_+	TerD family protein	K4JRX3	Caulobacter_phage	8.6e-36	41.4

DBSCAN-SWA_2

1852427 : 1860705

Escherichia_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012789180.1\|1852427_1853711_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	6.1e-77	40.5
WP_012789181.1\|1853841_1854537_+	hypothetical protein	NA	NA	NA	NA
WP_012789182.1\|1854712_1855576_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.8e-39	38.3
WP_012789183.1\|1855575_1856142_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.9e-36	45.2
WP_012789184.1\|1856150_1857206_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	5.9e-86	52.0
WP_044221072.1\|1857286_1858225_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	2.9e-68	43.9
WP_012789186.1\|1858255_1859569_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	5.3e-84	39.6
WP_012789187.1\|1859565_1860705_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	7.2e-37	30.3

DBSCAN-SWA_3

4302474 : 4378628

Paramecium_bursaria_Chlorella_virus(20.0%)

transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012791092.1\|4302474_4304982_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_044218966.1\|4305004_4308190_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012791094.1\|4308333_4309284_-	FecR family protein	NA	NA	NA	NA
WP_012791095.1\|4309341_4309938_-	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_012791096.1\|4310106_4310628_+	DinB family protein	NA	NA	NA	NA
WP_012791097.1\|4310754_4312653_-	hypothetical protein	NA	NA	NA	NA
WP_148230784.1\|4312709_4313234_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_012791099.1\|4313391_4314057_-	flavodoxin reductase	NA	NA	NA	NA
WP_012791100.1\|4314127_4314331_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_012791101.1\|4314369_4314732_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012791102.1\|4314827_4315586_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_044218971.1\|4315788_4318128_-	sensor histidine kinase	NA	NA	NA	NA
WP_044218974.1\|4318392_4319121_+	hypothetical protein	NA	NA	NA	NA
WP_012791106.1\|4319679_4321077_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_012791107.1\|4321153_4322278_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_012791108.1\|4322280_4323450_-	MFS transporter	NA	NA	NA	NA
WP_012791109.1\|4323581_4324172_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_012791110.1\|4324559_4326515_-	KUP/HAK/KT family potassium transporter	A7J6G4	Paramecium_bursaria_Chlorella_virus	9.4e-69	35.8
WP_012791111.1\|4326766_4327786_+\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_012791112.1\|4327915_4330471_+	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	1.0e-35	33.5
WP_012791113.1\|4330472_4331744_+	McrBC 5-methylcytosine restriction system component-like protein	NA	NA	NA	NA
WP_012791114.1\|4331844_4332969_+	hypothetical protein	NA	NA	NA	NA
WP_012791115.1\|4332991_4336843_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_012791116.1\|4336848_4337919_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_012791117.1\|4337952_4339686_-	phospholipase D	NA	NA	NA	NA
WP_012791118.1\|4339709_4340627_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_012791119.1\|4341221_4341779_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	1.3e-12	32.2
WP_012791120.1\|4342146_4342488_+	hypothetical protein	NA	NA	NA	NA
WP_012791121.1\|4343035_4343503_-	hypothetical protein	NA	NA	NA	NA
WP_012791122.1\|4343644_4345174_+	hypothetical protein	NA	NA	NA	NA
WP_012791123.1\|4345174_4345873_-	hypothetical protein	NA	NA	NA	NA
WP_012791124.1\|4345938_4346292_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148230582.1\|4346381_4347119_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012791126.1\|4347374_4347725_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012791127.1\|4347953_4348949_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012791128.1\|4349378_4350131_-	hypothetical protein	NA	NA	NA	NA
WP_012791129.1\|4350446_4351295_-	hypothetical protein	NA	NA	NA	NA
WP_012791130.1\|4351584_4352406_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_012791131.1\|4352944_4354222_+	hypothetical protein	NA	NA	NA	NA
WP_071820377.1\|4354311_4354542_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148230517.1\|4355362_4356473_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012791132.1\|4356568_4356904_-	EthD family reductase	NA	NA	NA	NA
WP_012791133.1\|4357102_4357693_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012791134.1\|4357699_4359289_-	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SGN0	Hokovirus	7.0e-30	24.4
WP_012791135.1\|4359768_4360560_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_012791136.1\|4360662_4361085_+	cupin domain-containing protein	NA	NA	NA	NA
WP_012791137.1\|4361755_4362298_+	hypothetical protein	NA	NA	NA	NA
WP_044218993.1\|4362636_4362870_+	hypothetical protein	NA	NA	NA	NA
WP_012791138.1\|4363368_4363731_+	hypothetical protein	NA	NA	NA	NA
WP_012791140.1\|4365421_4367170_+	AAA family ATPase	NA	NA	NA	NA
WP_012791141.1\|4367279_4368206_+	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_012791142.1\|4368861_4369761_+	hypothetical protein	NA	NA	NA	NA
WP_012791143.1\|4369730_4369937_+	hypothetical protein	NA	NA	NA	NA
WP_012791144.1\|4369938_4370232_+	helix-turn-helix transcriptional regulator	A8ATX5	Listeria_phage	7.1e-05	31.9
WP_012791145.1\|4370330_4371242_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_012791147.1\|4372111_4373224_+	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_012791148.1\|4373274_4374993_+	hypothetical protein	NA	NA	NA	NA
WP_012791149.1\|4375450_4376407_+	hypothetical protein	NA	NA	NA	NA
WP_148230517.1\|4377516_4378628_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

4811589 : 4916248

117

Cellulophaga_phage(18.18%)

transposase,protease,portal,integrase,capsid,head,tail

attL 4809837:4809866|attR 4916352:4916381

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4809837:4809866	attL	NA	NA	NA	NA
WP_052306837.1\|4811589_4812759_+\|integrase	tyrosine-type recombinase/integrase	S0A3I4	Cellulophaga_phage	3.2e-16	30.1
WP_012791463.1\|4812739_4813015_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012791465.1\|4813322_4813580_-	hypothetical protein	NA	NA	NA	NA
WP_012791466.1\|4813615_4814266_-	hypothetical protein	Q5QF30	Pseudomonas_virus	3.4e-31	37.8
WP_012791467.1\|4814966_4815245_-	hypothetical protein	NA	NA	NA	NA
WP_012791469.1\|4815657_4816326_-	hypothetical protein	A0A2H4J4W2	uncultured_Caudovirales_phage	6.0e-68	60.3
WP_012791470.1\|4816322_4816583_-	hypothetical protein	NA	NA	NA	NA
WP_012791471.1\|4816575_4816800_-	hypothetical protein	NA	NA	NA	NA
WP_012791472.1\|4817086_4817278_-	hypothetical protein	NA	NA	NA	NA
WP_012791474.1\|4817456_4817687_-	hypothetical protein	NA	NA	NA	NA
WP_012791475.1\|4817683_4817995_-	phage protein	NA	NA	NA	NA
WP_012791476.1\|4817991_4818177_-	hypothetical protein	NA	NA	NA	NA
WP_083781209.1\|4818173_4818602_-	hypothetical protein	A6M997	Geobacillus_virus	1.2e-08	36.1
WP_012791478.1\|4818651_4818930_-	hypothetical protein	NA	NA	NA	NA
WP_012791480.1\|4819200_4819623_-	hypothetical protein	NA	NA	NA	NA
WP_012791481.1\|4819619_4819973_-	hypothetical protein	NA	NA	NA	NA
WP_012791482.1\|4820016_4820745_-	ParB N-terminal domain-containing protein	H9YSD5	environmental_Halophage	7.6e-32	32.5
WP_012791483.1\|4820747_4821179_-	hypothetical protein	H9YSE1	environmental_Halophage	1.5e-14	54.4
WP_012791484.1\|4821175_4821439_-	helix-turn-helix transcriptional regulator	A0A0S2MVM8	Bacillus_phage	2.8e-05	39.7
WP_012791485.1\|4821435_4822191_-	hypothetical protein	NA	NA	NA	NA
WP_012791486.1\|4822159_4823017_-	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	3.6e-25	58.8
WP_012791487.1\|4823027_4823282_-	helix-turn-helix domain-containing protein	A0A0M3LR73	Mannheimia_phage	5.0e-07	45.5
WP_012791488.1\|4823299_4823554_-	hypothetical protein	NA	NA	NA	NA
WP_012791489.1\|4823581_4824022_-	hypothetical protein	NA	NA	NA	NA
WP_012791490.1\|4824021_4824429_-	hypothetical protein	NA	NA	NA	NA
WP_012791491.1\|4824453_4824855_-	hypothetical protein	NA	NA	NA	NA
WP_012791492.1\|4824851_4825235_-	DUF3268 family zinc-finger domain-containing protein	S4TQ39	Salmonella_phage	1.5e-23	44.9
WP_012791493.1\|4825231_4825870_-	siphovirus Gp157 family protein	A0A2H4JBT9	uncultured_Caudovirales_phage	1.0e-08	30.1
WP_012791494.1\|4825873_4826482_-	ERF family protein	A0A1W6JP21	Morganella_phage	2.5e-20	38.7
WP_012791495.1\|4826491_4827349_-	pentapeptide repeat-containing protein	A0A2H4FRY7	Salmonella_phage	3.0e-11	37.7
WP_012791496.1\|4827432_4827870_-	hypothetical protein	NA	NA	NA	NA
WP_012791497.1\|4828384_4828600_-	hypothetical protein	NA	NA	NA	NA
WP_012791498.1\|4828995_4829280_-	hypothetical protein	NA	NA	NA	NA
WP_012791499.1\|4829414_4829678_-	hypothetical protein	NA	NA	NA	NA
WP_012791500.1\|4829679_4829874_-	hypothetical protein	NA	NA	NA	NA
WP_012791503.1\|4830356_4830695_-	hypothetical protein	NA	NA	NA	NA
WP_012791505.1\|4831017_4831266_-	hypothetical protein	NA	NA	NA	NA
WP_012791506.1\|4831301_4831445_-	hypothetical protein	NA	NA	NA	NA
WP_012791507.1\|4831457_4831706_-	hypothetical protein	NA	NA	NA	NA
WP_012791508.1\|4831898_4832276_+	hypothetical protein	NA	NA	NA	NA
WP_012791509.1\|4832479_4833010_+	hypothetical protein	NA	NA	NA	NA
WP_012791510.1\|4833093_4833858_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_044219183.1\|4833990_4834326_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012791513.1\|4834893_4835538_+	DNA-packaging protein	A0A173H0W1	Pseudoalteromonas_phage	1.2e-15	37.2
WP_012791514.1\|4835527_4836943_+\|portal	phage portal protein	Q5ZGG2	Flavobacterium_phage	6.9e-106	45.9
WP_012791515.1\|4836927_4838367_+\|portal	phage portal protein	R9ZXY9	Cellulophaga_phage	1.1e-50	29.4
WP_012791516.1\|4838428_4839913_+	glycosyltransferase	A0A2L0HK05	Mycobacterium_phage	1.1e-109	44.4
WP_012791517.1\|4839915_4840452_+	hypothetical protein	S0A439	Cellulophaga_phage	2.9e-36	41.8
WP_044221976.1\|4840463_4840832_+	hypothetical protein	A0A248SL07	Klebsiella_phage	6.8e-21	49.6
WP_012791519.1\|4840833_4841100_+	hypothetical protein	A0A088C3B6	Flavobacterium_sp._phage	3.4e-06	34.1
WP_012791520.1\|4841096_4841273_+	hypothetical protein	NA	NA	NA	NA
WP_012791521.1\|4841541_4841751_+	hypothetical protein	A0A218M6E8	Flavobacterium_phage	2.8e-11	53.6
WP_012791522.1\|4841877_4842219_+	hypothetical protein	NA	NA	NA	NA
WP_012791523.1\|4842215_4842866_+	hypothetical protein	A0A2P1K022	Mycobacterium_phage	2.0e-47	46.8
WP_012791524.1\|4843079_4843454_+	hypothetical protein	NA	NA	NA	NA
WP_012791525.1\|4843450_4844413_+	hypothetical protein	A0A2R4AN90	Mycobacterium_phage	4.7e-05	42.9
WP_012791526.1\|4844537_4845287_+\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_012791527.1\|4845291_4846557_+\|capsid	phage major capsid protein	S0A0J1	Cellulophaga_phage	4.5e-40	31.4
WP_012791528.1\|4846620_4846965_+	hypothetical protein	NA	NA	NA	NA
WP_012791529.1\|4846968_4847499_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_012791530.1\|4847495_4847834_+\|head	phage head closure protein	NA	NA	NA	NA
WP_012791531.1\|4847833_4848319_+	HK97 gp10 family phage protein	R9ZYD4	Cellulophaga_phage	8.1e-14	42.1
WP_012791532.1\|4848315_4848759_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_012791533.1\|4848761_4849220_+	hypothetical protein	NA	NA	NA	NA
WP_012791534.1\|4849239_4849659_+	hypothetical protein	NA	NA	NA	NA
WP_012791535.1\|4849939_4852840_+	hypothetical protein	S0A1R5	Cellulophaga_phage	8.3e-21	30.8
WP_148230596.1\|4852866_4854792_+	hypothetical protein	NA	NA	NA	NA
WP_012791537.1\|4854791_4855556_+	hypothetical protein	NA	NA	NA	NA
WP_012791538.1\|4855552_4856872_+\|tail	tail fiber protein	A0A088FQW7	Escherichia_phage	2.1e-08	41.2
WP_012791539.1\|4856874_4857120_+	hypothetical protein	NA	NA	NA	NA
WP_012791540.1\|4857116_4859897_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_012791541.1\|4859880_4860909_+	hypothetical protein	NA	NA	NA	NA
WP_012791543.1\|4861346_4861646_+	hypothetical protein	NA	NA	NA	NA
WP_012791544.1\|4861642_4862050_+	hypothetical protein	NA	NA	NA	NA
WP_012791545.1\|4862042_4862303_+	hypothetical protein	NA	NA	NA	NA
WP_012791546.1\|4862461_4863322_+	peptidase-like protein	NA	NA	NA	NA
WP_012791547.1\|4863327_4863849_+	hypothetical protein	NA	NA	NA	NA
WP_012791548.1\|4863845_4864208_+	hypothetical protein	NA	NA	NA	NA
WP_012791549.1\|4864207_4865776_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_012791551.1\|4866465_4866927_-	PepSY-like domain-containing protein	NA	NA	NA	NA
WP_012791552.1\|4867100_4867400_+	hypothetical protein	NA	NA	NA	NA
WP_187294791.1\|4867603_4868062_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_044219204.1\|4868175_4870227_-	hypothetical protein	NA	NA	NA	NA
WP_012791555.1\|4870564_4871137_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_012791556.1\|4871149_4871959_+	hypothetical protein	NA	NA	NA	NA
WP_012791557.1\|4871977_4873480_+\|tail	phage tail sheath family protein	E3SNN5	Prochlorococcus_phage	1.2e-07	24.6
WP_012791558.1\|4873528_4873984_+\|tail	phage tail protein	A0A059XP41	uncultured_phage	2.3e-18	43.3
WP_012791559.1\|4873990_4874434_+\|tail	phage tail protein	NA	NA	NA	NA
WP_012791560.1\|4874440_4874611_+	hypothetical protein	NA	NA	NA	NA
WP_012791561.1\|4874614_4875283_+	hypothetical protein	NA	NA	NA	NA
WP_012791562.1\|4875284_4877099_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_012791563.1\|4877109_4877412_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_012791564.1\|4877423_4877852_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_044219207.1\|4877864_4881626_+	hypothetical protein	NA	NA	NA	NA
WP_012791566.1\|4881632_4882421_+	hypothetical protein	NA	NA	NA	NA
WP_012791567.1\|4882430_4885196_+	hypothetical protein	NA	NA	NA	NA
WP_012791568.1\|4885197_4887726_+	hypothetical protein	NA	NA	NA	NA
WP_012791569.1\|4887710_4889063_+	ATP-binding protein	A0A1C9EGA6	Acidianus_two-tailed_virus	2.8e-11	35.7
WP_012791570.1\|4889165_4890770_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_012791571.1\|4891121_4891877_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_012791572.1\|4892478_4893528_-	agmatine deiminase family protein	NA	NA	NA	NA
WP_012791573.1\|4893527_4894403_-	carbon-nitrogen hydrolase	M1IKC7	Paramecium_bursaria_Chlorella_virus	2.8e-57	43.7
WP_012791574.1\|4894460_4896410_-	hypothetical protein	NA	NA	NA	NA
WP_012791575.1\|4896851_4897904_+	DUF5074 domain-containing protein	NA	NA	NA	NA
WP_012791576.1\|4898127_4900140_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012791577.1\|4900142_4901294_+	hypothetical protein	NA	NA	NA	NA
WP_012791578.1\|4901308_4902217_+	hypothetical protein	NA	NA	NA	NA
WP_083781210.1\|4902325_4903477_+	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_012791580.1\|4903615_4903819_+	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	9.8e-06	41.3
WP_012791581.1\|4903995_4905081_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_052306838.1\|4905322_4905760_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_012791583.1\|4905770_4906826_-	ParM/StbA family protein	NA	NA	NA	NA
WP_012791584.1\|4907335_4908319_-	terpene synthase metal-binding domain-containing protein	NA	NA	NA	NA
WP_044219214.1\|4908498_4910259_-	response regulator	Q6XLV6	Feldmannia_irregularis_virus	7.2e-20	26.4
WP_063715252.1\|4910479_4913077_-	hypothetical protein	NA	NA	NA	NA
WP_012791587.1\|4913226_4914879_+	hypothetical protein	NA	NA	NA	NA
WP_012791321.1\|4915009_4916248_-\|transposase	IS4 family transposase	NA	NA	NA	NA
4916352:4916381	attR	NA	NA	NA	NA

DBSCAN-SWA_5

6088516 : 6128393

Vibrio_phage(25.0%)

protease,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012792470.1\|6088516_6089458_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012792471.1\|6089468_6091313_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012792472.1\|6091334_6091769_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_012792473.1\|6091844_6092237_-	hypothetical protein	NA	NA	NA	NA
WP_012792474.1\|6092279_6093650_-	DUF5458 family protein	NA	NA	NA	NA
WP_012792475.1\|6093680_6094127_-	hypothetical protein	NA	NA	NA	NA
WP_012792476.1\|6094158_6096630_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2I7SAX5	Vibrio_phage	9.0e-101	33.4
WP_012792477.1\|6096638_6098975_-	type VI secretion system protein TssR	NA	NA	NA	NA
WP_012792478.1\|6098981_6099923_-	PKD domain-containing protein	NA	NA	NA	NA
WP_012792479.1\|6099969_6100464_-	type VI secretion system transmembrane protein TssO	NA	NA	NA	NA
WP_083781142.1\|6100682_6102122_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_012792481.1\|6102276_6103317_+	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_012792482.1\|6103476_6103923_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_012792483.1\|6104032_6106120_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_012792484.1\|6106311_6106986_+	response regulator transcription factor	NA	NA	NA	NA
WP_012792485.1\|6106982_6108026_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012792486.1\|6108077_6110480_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012792487.1\|6110779_6112024_+	exonuclease SbcCD subunit D C-terminal domain-containing protein	NA	NA	NA	NA
WP_012792488.1\|6112030_6115765_+	AAA family ATPase	NA	NA	NA	NA
WP_187294689.1\|6115767_6116706_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_044219594.1\|6116958_6117378_-	response regulator	NA	NA	NA	NA
WP_012792491.1\|6117839_6119609_-	hypothetical protein	NA	NA	NA	NA
WP_012792492.1\|6119638_6120046_-	hypothetical protein	NA	NA	NA	NA
WP_012792493.1\|6120153_6120645_+	DinB family protein	NA	NA	NA	NA
WP_012792494.1\|6120706_6121834_-	hypothetical protein	NA	NA	NA	NA
WP_012792495.1\|6121959_6123255_+	hypothetical protein	NA	NA	NA	NA
WP_012792496.1\|6123346_6123787_+	hypothetical protein	NA	NA	NA	NA
WP_012792497.1\|6124126_6124621_-	hypothetical protein	NA	NA	NA	NA
WP_012792498.1\|6124995_6125745_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.9e-18	32.4
WP_012792499.1\|6125793_6126375_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012792500.1\|6126644_6127199_+\|tail	phage tail protein	A0A2R4A082	Microbacterium_phage	1.6e-18	35.6
WP_012792501.1\|6127238_6127790_+\|tail	phage tail protein	NA	NA	NA	NA
WP_012792502.1\|6127814_6128393_+\|tail	phage tail protein	A0A222ZFV4	Arthrobacter_phage	8.7e-15	31.3

DBSCAN-SWA_6

6642203 : 6673396

uncultured_phage(100.0%)

protease,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012792845.1\|6642203_6643892_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_012792846.1\|6643922_6647921_-\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_012792847.1\|6647920_6648379_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_012792848.1\|6648404_6648695_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_012792849.1\|6648705_6650496_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_012792850.1\|6650498_6651206_-	hypothetical protein	NA	NA	NA	NA
WP_012792851.1\|6651205_6651376_-	hypothetical protein	NA	NA	NA	NA
WP_012792852.1\|6651397_6651862_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012792853.1\|6651864_6652308_-\|tail	phage tail protein	T2KSM5	uncultured_phage	1.5e-27	48.8
WP_012792854.1\|6652351_6653197_-	hypothetical protein	NA	NA	NA	NA
WP_012792855.1\|6653239_6654178_-	hypothetical protein	NA	NA	NA	NA
WP_012792856.1\|6654307_6655705_-\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_012792857.1\|6655716_6656940_-	hypothetical protein	NA	NA	NA	NA
WP_012792858.1\|6656943_6657558_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_012792859.1\|6658434_6660264_-	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_012792860.1\|6660585_6662658_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_044219743.1\|6662654_6666956_+	ATP-binding protein	NA	NA	NA	NA
WP_012792862.1\|6667006_6667987_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012792863.1\|6668106_6668499_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012792864.1\|6668552_6669095_-	hypothetical protein	NA	NA	NA	NA
WP_012792865.1\|6669256_6669529_-	UBP-type zinc finger domain-containing protein	NA	NA	NA	NA
WP_012792866.1\|6670051_6671755_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_012792867.1\|6671923_6673396_+\|protease	M48 family metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013132

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection