CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	1 crisprs	cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5,WYL	0	7	0
NC_013167	Rippkaea orientalis PCC 8802 plasmid pP880203, complete sequence	0 crisprs	cas14k	0	0	0
NC_013168	Rippkaea orientalis PCC 8802 plasmid pP880204, complete sequence	0 crisprs	cas14j	0	0	0
NC_013161	Rippkaea orientalis PCC 8802, complete sequence	13 crisprs	cas14j,cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL,PD-DExK,2OG_CAS,csa3,c2c9_V-U4,DinG,c2c5_V-U5,Cas14c_CAS-V-F,Cas14u_CAS-V,cas14k,RT,c2c8_V-U2	1	9	3
NC_013163	Rippkaea orientalis PCC 8802 plasmid pP880202, complete sequence	1 crisprs	NA	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013160_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013160_1

45215-45763

Unclear

I-D,II-B

Consensus_repeat	Method
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CRISPRCasFinder
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CRT
GTTTCAATCCC--TCATAGGGATTAACAATAATTGGAAC	PILER-CR

7 spacers

cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5

The CRISPR arrays of NC_013160_1

>merge|NC_013160|1|45215-45763|CRISPRCasFinder,CRT,PILER-CR
TAAACTCCAGCTCATAGGGATTAACAATAATTGGAACTTCTTAATCATTTTACGGGTTCTATTGCTAATGCTAGGTTTCAATCCCTCATAGGGATTAACAATAATTGGAACCATGGCGTTTTCGAGGAGTGTTGCTGCGATCGCGTTTTTCGTTTCAATCCCTCATAGGGATTAACAATAATTGGAACGCTAAAATTTCTTGCTCTTTTTTCTCCTCAGAGGTTTCAATCCCTCATAGGGATTAACAATAATTGGAACCCCTAAGCAACCCGCTAACCCTCAAGTGGTTTTCCGGTTTCAATCCCTCATAGGGATTAACAATAATTGGAACATCGACTCATCCCTTTTTTTTCTAAAACTTTTTTTGTTTCAATCCCTCATAGGGATTAACAATAATTGGAACAATGATTGTATAAACGATAGAATTTCCCTGAATTTCTTGTTTCAATCCCTCATAGGGATTAACAATAATTGGAACTCGTATAGCTTGATTTCCCAAGGAATCGTTAAATGTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC

>NC_013160|1|1|45215-45763|CRISPRCasFinder
TAAACTCCAGCTCATAGGGATTAACAATAATTGGAAC	TTCTTAATCATTTTACGGGTTCTATTGCTAATGCTAG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CATGGCGTTTTCGAGGAGTGTTGCTGCGATCGCGTTTTTC
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	GCTAAAATTTCTTGCTCTTTTTTCTCCTCAGAG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CCCTAAGCAACCCGCTAACCCTCAAGTGGTTTTCCG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	ATCGACTCATCCCTTTTTTTTCTAAAACTTTTTTT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	AATGATTGTATAAACGATAGAATTTCCCTGAATTTCTT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	TCGTATAGCTTGATTTCCCAAGGAATCGTTAAAT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC

>NC_013160|1|1|45215-45763|CRT
TAAACTCCAGCTCATAGGGATTAACAATAATTGGAAC	TTCTTAATCATTTTACGGGTTCTATTGCTAATGCTAG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CATGGCGTTTTCGAGGAGTGTTGCTGCGATCGCGTTTTTC
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	GCTAAAATTTCTTGCTCTTTTTTCTCCTCAGAG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CCCTAAGCAACCCGCTAACCCTCAAGTGGTTTTCCG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	ATCGACTCATCCCTTTTTTTTCTAAAACTTTTTTT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	AATGATTGTATAAACGATAGAATTTCCCTGAATTTCTT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	TCGTATAGCTTGATTTCCCAAGGAATCGTTAAAT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC

>NC_013160|1|1|45289-45763|PILER-CR
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CATGGCGTTTTCGAGGAGTGTTGCTGCGATCGCGTTTTTC
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	GCTAAAATTTCTTGCTCTTTTTTCTCCTCAGAG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	CCCTAAGCAACCCGCTAACCCTCAAGTGGTTTTCCG
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	ATCGACTCATCCCTTTTTTTTCTAAAACTTTTTTT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	AATGATTGTATAAACGATAGAATTTCCCTGAATTTCTT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC	TCGTATAGCTTGATTTCCCAAGGAATCGTTAAAT
GTTTCAATCCCTCATAGGGATTAACAATAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013160.1\|WP_012796562.1\|38660_38954_-\|hypothetical-protein	unknown	unknown	unknown
NC_013160.1\|WP_012796566.1\|42432_43074_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_013160.1\|WP_012796567.1\|45997_46270_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013160.1\|WP_012797073.1\|46846_48502_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_013160.1\|WP_012796574.1\|54877_55786_-\|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NC_013160.1\|WP_012796561.1\|38290_38584_-\|hypothetical-protein	unknown	unknown	unknown
NC_013160.1\|WP_157861696.1\|48533_48908_-\|hypothetical-protein	unknown	unknown	unknown
NC_013160.1\|WP_012796571.1\|50435_51263_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_013160.1\|WP_012593006.1\|36644_37082_-\|hypothetical-protein	unknown	unknown	unknown
NC_013160.1\|WP_012796560.1\|37779_38139_-\|hypothetical-protein	unknown	unknown	unknown
NC_013160.1\|WP_012796570.1\|49772_50357_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_013160.1\|WP_012796558.1\|35544_36621_-\|hypothetical-protein	unknown	unknown	unknown
NC_013160.1\|WP_012796559.1\|37388_37760_-\|hypothetical-protein	unknown	unknown	unknown
NC_013160.1\|WP_012796565.1\|41552_42413_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NC_013160.1\|WP_083767501.1\|48992_49682_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_013160.1\|WP_157861699.1\|55788_58305_-\|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	gnl\|CDD\|130141
NC_013160.1\|WP_012796572.1\|51315_54060_-\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NC_013160.1\|WP_012796573.1\|54052_54874_-\|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NC_013160.1\|WP_012796564.1\|40428_41337_-\|DUF3365-domain-containing-protein	unknown	unknown	gnl\|CDD\|378734
NC_013160.1\|WP_012796563.1\|39457_40003_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013160.1\|WP_012796570.1\|49772_50357_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	5.27587e-57
NC_013160.1\|WP_012796566.1\|42432_43074_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	3.75537e-24
NC_013160.1\|WP_012796571.1\|50435_51263_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.42859e-43
NC_013160.1\|WP_012796565.1\|41552_42413_+\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	5.90545e-21
NC_013160.1\|WP_012797073.1\|46846_48502_+\|IS1182-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.24512e-29
NC_013160.1\|WP_012796572.1\|51315_54060_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.25015e-32
NC_013160.1\|WP_012796567.1\|45997_46270_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.04235e-35
NC_013160.1\|WP_157861699.1\|55788_58305_-\|hypothetical-protein	gnl\|CDD\|130141	TIGR01069, Endonuclease_MutS2, MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. [DNA metabolism, Other].	0.00215393
NC_013160.1\|WP_012796564.1\|40428_41337_-\|DUF3365-domain-containing-protein	gnl\|CDD\|378734	pfam11845, DUF3365, Protein of unknown function (DUF3365). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.	1.34538e-59
NC_013160.1\|WP_083767501.1\|48992_49682_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	7.61493e-84

>NC_013160.1|WP_012796566.1|42432_43074_+|Uma2-family-endonuclease
MITLKTAIEPDTWITLNWEDYLQFCDDSDYEKAKFYYYDGQGRIEMTPLGNDHASDHAIINYAIYLYAGLRNIPLNGKNCCSYRQTGSKEIQPDLSFYIGDNSNVIPYGTSIIDLDRYPVPNLVIEVANSSLEDDQGTKRLLYEDLGVNEYWIIDVKSVNIIAFKIKNGGSWRITQSQILPQLDIKLLVEALRQTRENNHSEVSRWLLEKFQT
>NC_013160.1|WP_012796565.1|41552_42413_+|PhnD/SsuA/transferrin-family-substrate-binding-protein
MKLSRRLFLITLVVQACQNPSLKGEPLVIGTVSYNEGNEVLNQYESFKHYLEQQTRSLVELEPAFNEKKALERIRSQAWSLVFAPPGLATIAMTKYQYIPLLPLDGISNLRSVIVVRQDSSFQDLKSLSNQTIALGEIGSATGYYWPIFNLYGLTLGQILFLSTPKSILESIAQGGAVAGALSLEQFKTYQTQFPLGTFRILFTDVHNVPPGVVLIVSTIPPQRRQEILQILNDTPSAIANEAGFVPNSPVPDYQYMISVVERVRAIFPETPPDLNNKNIRLFPSS
>NC_013160.1|WP_012796564.1|40428_41337_-|DUF3365-domain-containing-protein
MLLNKLKLRTKFNILLISIFLSGILASGVTLSWILQQRAQAEVTAKALVLLQTMNAVRDYTSDNIQPLLSPQLETESVFISETVPAYSATEVFQKLRRDPNYKSFFYKEATLNPTNLRDKADSFEQDLVETFRKDPNLKEISGFRTLPGGRSFYIARPLAIKKENCLRCHGDPNNAPKSQLATYGADNGYGWKLNDIVAVQMLSVPAEEVLNQANRSFSLVLLTLLGVFGLIVVGINFLLKQTVIRPLQKMAKIAESISMGDMDSEFEQKTEDEIGMLAKAFNRMKSSLAISMDLLNKHRKG
>NC_013160.1|WP_012796563.1|39457_40003_-|hypothetical-protein
MKLEPLKAFWRKRLVKELPYYDGKMTQSILCWLFTDQGDKTLVCDELAFNERLHYRYRILQQRYLDRDSHQAYSRLIIRLAAVLLGIPSIQVWLKQRSKSQKQLLKLIQILVQELLDNDSNLQQRIKPICEYTSNFHLHQALMLATVEEYCLQKVNNQPLLIHRFRQYLESQLHREIEKVA
>NC_013160.1|WP_012796562.1|38660_38954_-|hypothetical-protein
MKLSVLGLLAVSTLSLVAVPAFADQANVQTSGQVSTQVGDNNTSTQHTTQSNLDSRRGRGENTGNAQDSYQDSLQEGNGNNSAQTTNQRNVVRHDRR
>NC_013160.1|WP_012796561.1|38290_38584_-|hypothetical-protein
MKLSVLGLLAVSTLSLVAVPAFADQANVQTSGQVSTQVGDNNTSTQRTTQSNLDSRRGRGENTGNAQDSYQDSLQEGNGNNSAQTTNQRNVVRHDRR
>NC_013160.1|WP_012796560.1|37779_38139_-|hypothetical-protein
MQAQKLMLIISFLILCLPIIAHAKPIKVQAGNVTIMRGENRHIEVNTPRIRMSVPRQPIETESDDDYFDNEDEFNSSNSRQTLQNSSCGTRSVQSSQQTNINGSRRTVTQTNISNNICR
>NC_013160.1|WP_012796559.1|37388_37760_-|hypothetical-protein
MKVNPLSVGLLSIASLITIASVVPQSAWAQCVQSHTGVQLNMGKSPAEQTHNTQFDNQGSCTGNVISSTSTQLNLGGDNPRQHQEVRQQTRGGRGNPSGVNGPTVSVDVVTPVNVQTPQNFPY
>NC_013160.1|WP_012593006.1|36644_37082_-|hypothetical-protein
MTAKNFIFFSCLVILVTTMINIGSQKMRNNYSFSQSYQEQSTSVNLSLSDLESPCILSISSSKSETQLTIEISLNDQLIKSFTGHDNRMDLSPYLTAGQQRILISGNYSPSNASIKIKLQGKNTYINQEIAGTGQLRQQLIFNIQ
>NC_013160.1|WP_012796558.1|35544_36621_-|hypothetical-protein
MKNTINFLGLASITLLGFSYFPVSAQTPQTQIQSIVLEGQANQVSQKINQYLNLNFIYLPQIQDSVIPIPNLNIQDNPLNNVTQITNQRVLGFPLVDTSLMSFTLNDFLQNDNTLTGKQFITQEILIEGNLNSVTQESRQTLTDFFWLDPSSKITNNDHFSQFLDKLLDSQALDSLQFGLQDTFVFGNDNKVTQLIDQTFDSFILTSDDFESWFNTNLPNESKGLDPVQFTVQHTSIVPNQNNIISQTLNQVISGISFINPSNSSQKKGFLSSNNNLIFETNSVVNFDINEFIDGILNNTIVEATQKNQQRIQVQGNENKATQVNQQALTVSVPEPSLGKIMVVLLVMIGLEWCYEKP
>NC_013160.1|WP_012796567.1|45997_46270_-|CRISPR-associated-endonuclease-Cas2
MFILVSYDISEDKRRTKIYNTLKSYGQWVQYSIFECDLTETQYAKLRHRLSKLIQGDTDSIRFYFLCQCCQGKIERIGGEMPRDHTIFVV
>NC_013160.1|WP_012797073.1|46846_48502_+|IS1182-family-transposase
MSLHPKPIPPIPEDTVRVARAAFRSGNIYLQLRDTLETIYVDEDFADLFSVKGQPAQSPWRLALICIMQYMENLSDRQVAEAVRGRIDWKYVLSLPLEDSGFDYSVLSEFRKRLIEGGSEELLLNKILEKFKEKGILKKPKQQRTDSTHILAAIRPLNRLETLGETMRAALNSLSVAAPDWLRRNLLKDWYDFYGRRIENYRLPKLDSERTQLGEKIGKDGFNLLNQIYHHDSPDWLRHLRAVETLRQVWIQQFYAPEIDRVQLRPPKDMPPSTIAIHSPYDLEAHYSSKRSVNWVGYKVHLTEICDEDSPHFITQVTTTLSTVTDEVVVPSIHEALEEQSLLPNQHLVDLGYTPAENLISSQRDYDLELIGPVRSDPSWQSRNHPKFAAENFTIDWEKKVATCPKGHQSITWTQKKDVGGQPIISIRFSTFSCNNCRSRSRCTRAKTEPRKLTIRDQNEYLALKNRRAVQNTREFQDIYRKRAGIEGTLSQGIRKSGLRQSRYVGEAKTHLQHIFTAVAINLYRLDNWLNDIPLASTRYSRFCFLKSKTG
>NC_013160.1|WP_157861696.1|48533_48908_-|hypothetical-protein
MKRKRDIQGKFSLKNDDYRQVRSLRLTYRTWRALGIASECLGWTRADLLENLVEQNQGNFPYYPSSSEVSRENDFITPEKPLNQDNLAVLAEKVLRELSYGKQSSHYKVAKQALKRLIELSYPS
>NC_013160.1|WP_083767501.1|48992_49682_-|CRISPR-associated-endonuclease-Cas1
MGTAYITQEDAFIGKTDERLVVKSDKQKLLDVPLLKVDGVVILGRATVSPAIITEMLSRHIPLTFLTANGRYLGRLEPEVTKNIFVRKAQWQAIGESSQAIHLVQAFVRGKLKNYRNSLMRRQRNFEHLDLTKSITKIEQAITPIDETTSINSLRGLEGAGSAAYFGSFNELITNKNFQFTHRNRRPPTDPVNALLSLGYALLRHDIQSGVNIVDTVGESNLSVFQNEV
>NC_013160.1|WP_012796570.1|49772_50357_-|CRISPR-associated-protein-Cas4
MTDYIPIASLNHYAYCPHRCWLMFCASEFIDNQYTIEGTTLHERVHTNSEENRGDTYQIRAIWLKSERYQLIGKSDLIEEIDGQLYPIEYKRGKKGEWDNDELQVCAQALCLEEMTGKSINTGYIYYAHSHQRQEVPISPSLRQQAITTINAIQTMTKTGKMPQANYTKKCQGCSLYNHCLPQSVKKVKSYREA
>NC_013160.1|WP_012796571.1|50435_51263_-|CRISPR-associated-endoribonuclease-Cas6
MPHSLVINLTPVSPISPNYLNGRHIHALFLTLVSHVDQQLGNALHHSQSDKAFSLSPLQTIGKNIDHHNLKWTHHKSIDPGASCWFRVSLLDDTLFSKLTQLWLNLNPNQPWHLGSADLQITSILGTPQSNQPWANACPYQQLYEQASETERTFKLTFATPTAFRQGKYDTALPTAESVFKSLLTRWNKYSPVNISDLTIDSLFPSFFNIQTEIVMDSRSKFIGCVGDIEYRLLGEVDPLQIKHFNVLADYALYCGIGRKTTMGMGMTRRLHYSS
>NC_013160.1|WP_012796572.1|51315_54060_-|CRISPR-associated-helicase-Cas3'
MSKRYDFGRLFFPESHEDSLSDVILFQPLGNHVSNVRFLVNKWQFPKVSKLSRKRISKSAGLHDIGKPQKFSIKVDFKKGKPQLTYSFSGHRFLAECPNDPWVEKLARGHHDYSVHDICRDTYILKNLINGLDENNPLFKVASSYYQDLSVDSLIYAQELYILEMCDQIEAEIACRFYEDDDQAESRAFMDFNITSDSDNKNIFYIEPWIFEEDKIKLTLATWSMNIPQELKDKIQNSSEEDKQKLTQDLQSSIKNWWKSQPKKLRAKTNKVILKPLLSERLEKFNATQLYQKLKGFTPNPMQEKLINALNPEINPSPSCLLKAPTGSGKLEAILIPSLAYDYKLILVLPTKSLLEDHRQRIDSYLLKFSELPSNQDRDISLVIDTGTKMTRYIYKNGSMRLPENTPRRHLYKGNIILTTLDKFMYRYFSFGDKQKSFIFPYRIHQDNTLICFDEAHSYDDISFTNFCSLIKALYEAGRSLILMTATLSHKHLERFDYLQDDLIDYIDDADNLQKLYKFSQQILKQQFVNQKHFEWIQDVEHNSESPETFHNAFTQRVLNEWQSNSNQRIIATVETVKDAVVIYEKIKSILETNKDSQGRFLFLYHGRISDIPKDSEFSRTNIYQQIKARDEKNQPYILVTTSAIEVGCDLNSTKLITQFCNPENLIQRGGRCNRKGDIKGAKIIVIGKNIPEFANTLSEFELKNYQLVLQNLNNKNFDTKTIMNCVSSKQQVDDYRVVELFSMLHDYVYNADLTCQPSHEKGLVITRSWTPSVTLVYDNGKNRDKMNEMPQITVPINRLVIKKNKETDESNEYNNIDVYEYIYNKEETRWKLEPLKYWGQAYKKDIVIIIKEEHKEASYGTSQPYEYDPELGFVKLPGVFIKWKSIDNEERLQYKTSENKSVVITYIKPLSNN
>NC_013160.1|WP_012796573.1|54052_54874_-|hypothetical-protein
MYCLKFKIIPTAAMTFRILPGSILNIATYPFVPPTTLSGFLRRVAMLSHGLDIPETTINKENPPYYTLPPHCVALGAYPVNTAYHGVHRTYRKGMRSFNHDTFSRLYVEKGENLQLHTWEYFIADELVGYVISESQSSLEPLLDLESFGCKLGKEGFAVIDQISEPIQLQKEKVIAHPSTIVPMEVLLQENNFINGCDIYNLYRYDWSKSKQIEDEIGLLDQERSLINGFIPFVAAYYPKKAHYLPPLEFYTDEEIYIPTSLVSLLQGEEVNV
>NC_013160.1|WP_012796574.1|54877_55786_-|hypothetical-protein
MASESKTTESKVTTGLPKIDKQNPRFHFDIYAILEGSQELYLGHEVQVNVNLVETVKLSTKDGKEIEKCYLSPTKRRGVERRCLLWSPVKSGELLGDKHKCGIPKTCAEPTCPICSTYGALDPGKRTLIGRVTHGGGVAIQEIYPVEKQRAMHPSRLVNQNDETPIPFKREYNQPGILYPVCNHGLSITEQDFSAVAYAFLDSLPRIGSGNPKGIAIAEYENTPLLVVDRYLSPRGKRPLISPSETNPEQAISDFLRLARYPEENTNTNHISESHFERWIGDQALKKLQEYAGQFVDTVLQA
>NC_013160.1|WP_157861699.1|55788_58305_-|hypothetical-protein
MLVSALSAKVFADSSLDIIDALSNYSEAIAIAQSLDDSRLVRQLRLKAKDSQTKTQLEKLIIQGERVVYQSQDIGKVQLLYKSPLPGELQARLAYESTIDRFLEYLQKQYKITLLSESDYHVKVFIPKTKEGEDLTELWNKFIEQVAFSKDGDSQQTLSNLRQTFILMLKSVTLAGRGFSTLEVPIITQDQATVLASLYLAVWEQVKKRQEDRQVKINIINQTIKVLNQDLENTQLSDKDRKSKEKNLQSQEKEAKKEQEMQDQEYQKYQEYFQKTVSKTLQDQQNYWEEFQTIEQQLNQTGLKKAQVTKLQKQKDKLQSQIIFSLKSIASKQKLLDESQGNPFEFVRLDKEDNPDKLKEIVNLAKSFNKTATEQINSTRGDIFTQCILEMYRLLEITKFNEIPEPLLTTYLKPSKMRTAGDDGKDFCYSCGVALEGKHAQWRVARFMFERPSQRRQSSSSEDRPFICSCCSVLSFASPLKVTDDSIIFQIESRSNQETSKLKIKEYLRMLTTKEINLFSGRYIVLASDKTRNGDLASQKLGQVQYALAKISSIFPLDVITNFDFILQLQGSKKELLSRQLIFIKGLIEGYNQSIITTGNKGQEINLKLGDAIRYVQQDSPYLADYTLLKSSSVSNRLLLEQVREKYYQTIIYDLKEKGEDMKSHPLWKRHKLFEDVAALTGLTYPFAESLERTAKQEVKKGNKPPEYVQREVSKLIEKVNDPIAFGYYATLGDENKTSVQARLFHNSSNYFIYDQAKILLENKLGISGREETDKDGRKWLQFNADDLIKAYAYFANPELENSYSQQKDWRNLTYNLKLSLYTRFPELVRKLSSKGDK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013160_1	1.1\|45252\|37\|NC_013160\|CRISPRCasFinder,CRT	45252-45288	37	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	45252-45288	0	1.0
NC_013160_1	1.2\|45326\|40\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45326-45365	40	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	45326-45365	0	1.0
NC_013160_1	1.3\|45403\|33\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45403-45435	33	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	45403-45435	0	1.0
NC_013160_1	1.4\|45473\|36\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45473-45508	36	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	45473-45508	0	1.0
NC_013160_1	1.5\|45546\|35\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45546-45580	35	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	45546-45580	0	1.0
NC_013160_1	1.6\|45618\|38\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45618-45655	38	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	45618-45655	0	1.0
NC_013160_1	1.7\|45693\|34\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45693-45726	34	NC_013160	Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence	45693-45726	0	1.0
NC_013160_1	1.3\|45403\|33\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45403-45435	33	NZ_CP031272	Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence	26774-26806	10	0.697
NC_013160_1	1.3\|45403\|33\|NC_013160\|CRISPRCasFinder,CRT,PILER-CR	45403-45435	33	NZ_CP018877	Bacillus megaterium strain JX285 plasmid 4, complete sequence	4617-4649	10	0.697

1. spacer 1.1|45252|37|NC_013160|CRISPRCasFinder,CRT matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 0, identity: 1.0

ttcttaatcattttacgggttctattgctaatgctag	CRISPR spacer
ttcttaatcattttacgggttctattgctaatgctag	Protospacer
*************************************

2. spacer 1.2|45326|40|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 0, identity: 1.0

catggcgttttcgaggagtgttgctgcgatcgcgtttttc	CRISPR spacer
catggcgttttcgaggagtgttgctgcgatcgcgtttttc	Protospacer
****************************************

3. spacer 1.3|45403|33|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 0, identity: 1.0

gctaaaatttcttgctcttttttctcctcagag	CRISPR spacer
gctaaaatttcttgctcttttttctcctcagag	Protospacer
*********************************

4. spacer 1.4|45473|36|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 0, identity: 1.0

ccctaagcaacccgctaaccctcaagtggttttccg	CRISPR spacer
ccctaagcaacccgctaaccctcaagtggttttccg	Protospacer
************************************

5. spacer 1.5|45546|35|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 0, identity: 1.0

atcgactcatcccttttttttctaaaacttttttt	CRISPR spacer
atcgactcatcccttttttttctaaaacttttttt	Protospacer
***********************************

6. spacer 1.6|45618|38|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 0, identity: 1.0

aatgattgtataaacgatagaatttccctgaatttctt	CRISPR spacer
aatgattgtataaacgatagaatttccctgaatttctt	Protospacer
**************************************

7. spacer 1.7|45693|34|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NC_013160 (Rippkaea orientalis PCC 8802 plasmid pP880201, complete sequence) position: , mismatch: 0, identity: 1.0

tcgtatagcttgatttcccaaggaatcgttaaat	CRISPR spacer
tcgtatagcttgatttcccaaggaatcgttaaat	Protospacer
**********************************

8. spacer 1.3|45403|33|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031272 (Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

gctaaaatttcttgctcttttttctcctcagag	CRISPR spacer
agataaatttcttgctctttgttcttcttcaaa	Protospacer
.   **************** ****.**. .*.

9. spacer 1.3|45403|33|NC_013160|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018877 (Bacillus megaterium strain JX285 plasmid 4, complete sequence) position: , mismatch: 10, identity: 0.697

gctaaaatttcttgctcttttttctcctcagag	CRISPR spacer
agatcaatttcttgctcttttatctcttccagg	Protospacer
.    **************** ****.** ..*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013161_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_1

512560-513623

TypeI-D

V-U2

Consensus_repeat	Method
GTTTCAATCCCATTACTAGGATTCATTAAAAA--GAAAC	PILER-CR
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CRISPRCasFinder
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CRT

14 spacers

cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL

The CRISPR arrays of NC_013161_1

>merge|NC_013161|1|512560-513623|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTTCCAAAATACAAAAAACTATTGGGGCAGATGTTGAGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTTATCTGATGCTTTTCTCAAGCTGTCGCCTGTTTTGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTCCTTATTCTTGTCTTTCTGATTTTCAAAAAGTTGTTGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACCTCTTACCGATGGAGGCTTTGCCTATTACTTAGCCGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACATCTGTAAGAATCATAATTTAGAATTTGATATAATGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTCAGGCTTTTTATCTTTGTCTTTGGTAATCAGTTCCTCAGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACAACTAATAAATTAACCTAAGATTATGACTGAAGTTGCTCGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTGTACACCTATCTGTTTTGATATTTTCCATTTTAGGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACAACGGAATAATCGCTAATATCGATCCCTAAGTCCTTGGCGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTTAGGGATTGCGATTTTTTCCGAGGGATCTAAGCAGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACCTAACAGGACAAACCGATCCCCCCCGCCGGAGGAATGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTTGATCTAATTTATTGTAATAACGTTCAACTAAATGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACGCCGAAAACTAGCGAGCACTTCCCCCCATTTTTGCGCTGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAACTGGGATGGTATTGAAGGTAAAGAGCTTTTAGGTTCGTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC

>NC_013161|1|1|512560-513623|PILER-CR
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTCCAAAATACAAAAAACTATTGGGGCAGATGTTGA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTATCTGATGCTTTTCTCAAGCTGTCGCCTGTTTT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TCCTTATTCTTGTCTTTCTGATTTTCAAAAAGTTGTT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CTCTTACCGATGGAGGCTTTGCCTATTACTTAGCC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	ATCTGTAAGAATCATAATTTAGAATTTGATATAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TCAGGCTTTTTATCTTTGTCTTTGGTAATCAGTTCCTCA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	AACTAATAAATTAACCTAAGATTATGACTGAAGTTGCTC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TGTACACCTATCTGTTTTGATATTTTCCATTTTAG
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	AACGGAATAATCGCTAATATCGATCCCTAAGTCCTTGGC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTAGGGATTGCGATTTTTTCCGAGGGATCTAAGCA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CTAACAGGACAAACCGATCCCCCCCGCCGGAGGAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTGATCTAATTTATTGTAATAACGTTCAACTAAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	GCCGAAAACTAGCGAGCACTTCCCCCCATTTTTGCGCT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TGGGATGGTATTGAAGGTAAAGAGCTTTTAGGTTC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC

>NC_013161|1|1|512560-513623|CRISPRCasFinder
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTCCAAAATACAAAAAACTATTGGGGCAGATGTTGA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTATCTGATGCTTTTCTCAAGCTGTCGCCTGTTTT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TCCTTATTCTTGTCTTTCTGATTTTCAAAAAGTTGTT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CTCTTACCGATGGAGGCTTTGCCTATTACTTAGCC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	ATCTGTAAGAATCATAATTTAGAATTTGATATAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TCAGGCTTTTTATCTTTGTCTTTGGTAATCAGTTCCTCA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	AACTAATAAATTAACCTAAGATTATGACTGAAGTTGCTC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TGTACACCTATCTGTTTTGATATTTTCCATTTTAG
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	AACGGAATAATCGCTAATATCGATCCCTAAGTCCTTGGC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTAGGGATTGCGATTTTTTCCGAGGGATCTAAGCA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CTAACAGGACAAACCGATCCCCCCCGCCGGAGGAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTGATCTAATTTATTGTAATAACGTTCAACTAAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	GCCGAAAACTAGCGAGCACTTCCCCCCATTTTTGCGCT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TGGGATGGTATTGAAGGTAAAGAGCTTTTAGGTTC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC

>NC_013161|1|1|512560-513623|CRT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTCCAAAATACAAAAAACTATTGGGGCAGATGTTGA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTATCTGATGCTTTTCTCAAGCTGTCGCCTGTTTT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TCCTTATTCTTGTCTTTCTGATTTTCAAAAAGTTGTT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CTCTTACCGATGGAGGCTTTGCCTATTACTTAGCC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	ATCTGTAAGAATCATAATTTAGAATTTGATATAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TCAGGCTTTTTATCTTTGTCTTTGGTAATCAGTTCCTCA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	AACTAATAAATTAACCTAAGATTATGACTGAAGTTGCTC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TGTACACCTATCTGTTTTGATATTTTCCATTTTAG
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	AACGGAATAATCGCTAATATCGATCCCTAAGTCCTTGGC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTAGGGATTGCGATTTTTTCCGAGGGATCTAAGCA
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	CTAACAGGACAAACCGATCCCCCCCGCCGGAGGAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TTGATCTAATTTATTGTAATAACGTTCAACTAAAT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	GCCGAAAACTAGCGAGCACTTCCCCCCATTTTTGCGCT
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC	TGGGATGGTATTGAAGGTAAAGAGCTTTTAGGTTC
GTTTCAATCCCATTACTAGGATTCATTAAAAAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_012593861.1\|499902_501984_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|184039
NC_013161.1\|WP_012593870.1\|511603_512416_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NC_013161.1\|WP_015783167.1\|521654_523760_-\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_013161.1\|WP_015783160.1\|513816_514110_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013161.1\|WP_012593863.1\|502476_503712_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|181053
NC_013161.1\|WP_012593867.1\|505890_506112_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783159.1\|509894_510551_+\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NC_013161.1\|WP_015783166.1\|518672_521597_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	cas10d	cd09712_cas10d_CAS-I-D	gnl\|CDD\|187843
NC_013161.1\|WP_015783161.1\|514106_515084_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274976
NC_013161.1\|WP_012593880.1\|524356_525304_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_013161.1\|WP_015783164.1\|516610_517387_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NC_013161.1\|WP_012593879.1\|523911_524160_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012593865.1\|504310_505159_+\|prohibitin-family-protein	unknown	unknown	gnl\|CDD\|259799
NC_013161.1\|WP_015783158.1\|506362_509683_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NC_013161.1\|WP_015783162.1\|515116_515707_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_013161.1\|WP_012593866.1\|505323_505875_+\|DUF3172-domain-containing-protein	unknown	unknown	gnl\|CDD\|371494
NC_013161.1\|WP_012593862.1\|502014_502410_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NC_013161.1\|WP_015783165.1\|517529_518600_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_013161.1\|WP_015783163.1\|515832_516642_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|337605
NC_013161.1\|WP_012593860.1\|498966_499752_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237624

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_012593861.1\|499902_501984_+\|molecular-chaperone-DnaK	gnl\|CDD\|184039	PRK13411, PRK13411, molecular chaperone DnaK; Provisional.	0
NC_013161.1\|WP_012593870.1\|511603_512416_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	1.3148e-52
NC_013161.1\|WP_015783167.1\|521654_523760_-\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	1.20027e-50
NC_013161.1\|WP_015783160.1\|513816_514110_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.81213e-25
NC_013161.1\|WP_012593863.1\|502476_503712_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|181053	PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated.	0
NC_013161.1\|WP_012593862.1\|502014_502410_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	7.82762e-61
NC_013161.1\|WP_015783159.1\|509894_510551_+\|two-pore-domain-potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	0.000226
NC_013161.1\|WP_015783166.1\|518672_521597_-\|type-I-D-CRISPR-associated-protein-Cas10d/Csc3	gnl\|CDD\|187843	cd09712, Cas10d_I-D, CRISPR/Cas system-associated protein Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain. Fused to N-terminal HD domain; signature gene for I-D subtype; also known as Csc3 family.	0
NC_013161.1\|WP_015783161.1\|514106_515084_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.80934e-150
NC_013161.1\|WP_012593880.1\|524356_525304_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.60845e-22
NC_013161.1\|WP_015783164.1\|516610_517387_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	4.85538e-63
NC_013161.1\|WP_012593865.1\|504310_505159_+\|prohibitin-family-protein	gnl\|CDD\|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	2.576e-60
NC_013161.1\|WP_015783158.1\|506362_509683_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NC_013161.1\|WP_015783162.1\|515116_515707_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.19926e-32
NC_013161.1\|WP_012593866.1\|505323_505875_+\|DUF3172-domain-containing-protein	gnl\|CDD\|371494	pfam11371, DUF3172, Protein of unknown function (DUF3172). This family of proteins has no known function.	7.46272e-94
NC_013161.1\|WP_015783165.1\|517529_518600_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	0
NC_013161.1\|WP_015783163.1\|515832_516642_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	8.81179e-13
NC_013161.1\|WP_012593860.1\|498966_499752_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237624	PRK14143, PRK14143, heat shock protein GrpE; Provisional.	1.99154e-75

>NC_013161.1|WP_012593870.1|511603_512416_+|phytoene/squalene-synthase-family-protein
MNLRNNALKILKETSRTFYIPISRLPDRLQEAVASAYLCMRAIDEVEDHPDLDNFTKAQLLRRMSLNLQAGSEKARVEDFSAGLMPYNACLPDVTLRVGEWALLAPDSIAPRIWDATAAMADRMAYWAENNWTIRTEAHLDQYTFSVAGAVGLLLSDLWAWYDGTQTNRSYAIGFGRGLQAVNIVRNHREDLRRGVNFLPQGWNEQDVHQYARRNLKLADLYTKSLPSGPALDFCKIPLALAYGTLEVMALGKEKLSRSDVIALVQRVTR
>NC_013161.1|WP_015783159.1|509894_510551_+|two-pore-domain-potassium-channel-family-protein
MKSTWQFYSHTTGYTRLFIDLIIVFFIAPLGNLSPIFQWLISLFFVMTLLLGVNTLAFPPKIIRTLQILAAISFAADIIVFPDFPKLTALTSLIAHVFQAIFVFCIMMAISFRITHEKQVNGAVIQGSICVYLLLGIFWFFLYQIVLFFDPFAFSIPEEITSNSLFYFSFTTLTTVGYGDVTPINPFAMTLSNAEALVGQIYPAIVIAKLVSLYERNE
>NC_013161.1|WP_015783158.1|506362_509683_-|efflux-RND-transporter-permease-subunit
MLLSFANAFIKRPVLSTVCTIVIILLGTIAMALLPLDKLPEIAPKKVAVSANYIGADAKTTEDNVTTVLEREINGTEQVRWIDSFTDNTGNVTVNVTFPTEMDRNTAQVLVQNRVSQAQSTLPSVVNQAGLRTNTQSPSLTLVYGFYVENGPDGQPLYDTTFIYNYVDRYIWNDMKGLPGVGSVALFGGANYAMRIWLDPDKLAARGLTALDVVGTINEQNFEVGIGRIGQQPAPQDQQFELPLRVAGRFTNVAEAEDMVVKVGEDGTLIRIKDVGYAELGMENYDTKVNVDGNPGVAFLIYQLPGSNALETADAAKAKMAELQQSFPPGLKVVIGLDNTLFVNASLEDLMITLLQAIALVVLVIFVFLQDWRTTVIPAIAIPVALVGAMIGLKAFGFTLNQLSLFACVLATGLVVDDGIVIVEAVSNKLSQGMRPRQAAMDAMDELFGATIATSVVLMAVFVPVTFFPGTTGIVYRQFALTIIFAVAFSTFNALTFSPTMSAILLSPPQPKHGPLALFFNWFNRGFDLVREGYRRFINFLTHVRILVMVVFIAGLVGTAWIYQTMPSGFIPAEDQGYFFGITEAPPGVSLNYTYAIDRQTTQIIQNMENADQVLDHVISLTGFSFEGRNANKSLTFVKLKPWGERPGPQKSAFGIIQKLNRAFAQQISGARVFAANAPPVDGLSSFDGSEIFIQDRQLKGIDALIENVQRVMAAANQRPEIGSTFTTFTFNSPLITMEIDRQKAKAQNIAIDDILRTLQTYIGSNFVNQFVFEGRLYRVYAQATPQDRANPEDIGRLYVRSRDGAIVQLSNLVTPTQTTYPPILTRYKTYPAIKLIISPAPGYSSGQVIQAMEEVANETLQPGFGYAWTNTAAEEKSSGGAAPIVFGLAFVMVFLVLAAQYESYIDPTIILLTVPLAILGALGAIWIRVSFVQTAPFNPGNGIWPILNNNMYAQVALVMLIGLAAKNAILIVEFANQARDLGMTITRSAIYAAEERLRPILMTAVSSLVGFAPLLTASSVGAVSRWSLGTAIFGGLALATVLSLVLVPILYIVVKNFEKYLLDGGKKPPSPPSSGNGHSKPSPPPEPQPENEEIAPVFKTSPQNE
>NC_013161.1|WP_012593867.1|505890_506112_-|hypothetical-protein
MNIRVIIFSAIMTALIGAMIGLALTKISQREQRRNILIIGGASVGFVIGAFQASIREQKRIRDEEFGDSDELQ
>NC_013161.1|WP_012593866.1|505323_505875_+|DUF3172-domain-containing-protein
MARRPPRDYPPRSNPPRYSSDSQLGSKINYGMIGLLAGIFVLGIGVGIGFSSTASFDPQNVASREVIDRSAPNAELCVQFGASAIVTDMRVFITLNPFSVFVTQPSMQPGCVLRRANIGLLEQQRLVTAEQLRDCKNRMNTFGFTGSLESKPNIACIYPNEAAGNLFLNPAGSVNPRSETDNF
>NC_013161.1|WP_012593865.1|504310_505159_+|prohibitin-family-protein
MNRQSAPSLQSLFGGIIAALLVVISFNSFVVINPGQAGVLSILGKAQDGALLEGIHFKPPLVSTVDIYDVTVQKFEVPAQSATKDLQDLTASFAINFRLDPLQVVDIRRTQGTLQNIVAKIIAPQTQESFKIAAAKRTVEQSITQRTELKQDFDDALNARLAKYGIIVLDTSVIDLTFSPEFARAVEEKQIAEQRAQRAVYIAQEAEQQAQADVNRAKGKAEAQRLLAETLKAQGGELVLQKEAIEAWREGGAKMPNVLVMGGESHGGGVPFLFNLSNVETQ
>NC_013161.1|WP_012593863.1|502476_503712_+|LL-diaminopimelate-aminotransferase
MATINDNYLKLKAGYLFPEIARRVKTFAEANPDAKIIKLGIGDVTEPLPEACRTAMIKAIEDMGDRGTFKGYGPEQGYEWLREKIATHDFQARNCDVDASEIFVSDGAKCDTGNILDIFGKNNKIAVTDPVYPVYVDTNVMAGHTGEVNDKGEYEGLVYLPINAENNFIAEIPSQKVDIIYLCFPNNPTGATATKDYLKNWVDYAKANGSIIFFDAAYEAFITDSSLPHSIYEIEGARDCAIEFRSFSKNAGFTGTRCALTVVPKTLTAKASDGSDVELWKLWNRRQSTKFNGVSYIVQRGAEAVYSEAGKAQVQALISFYLENAQIICDKLKGAGFEVYGGVNAPYIWLKTPHNLSSWDFFDKLLQTANVVGTPGSGFGAAGEGYFRISAFNSRENVLEAMKRITSQFHL
>NC_013161.1|WP_012593862.1|502014_502410_+|RidA-family-protein
MTNHRIIRTEQAPAPVGPYNQAIAATGQLLFVAGQIPLNPETGEIVGTGDIIAQTRQVMANLEAILKAAGTKWDKVVKTTVFLTDLGNFSSMNQVYAQYFSEEIAPARACVEVSRLPKDVLVEIDCIAVID
>NC_013161.1|WP_012593861.1|499902_501984_+|molecular-chaperone-DnaK
MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFSKGQQRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDETREERSRVPYECVKGRDDTVNVDIRGQHYSPQEISAMILQKLKADAESYLGEPVTEAVITVPAYFTDAQRQATKDAGTIAGLDVLRIINEPTAAALAYGLDKQDQEQFILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDHAVVQWMVKNFKDQESIDLSQDKMAIQRLREAAEKAKIELSNMLSTSINLPFITSDESGPKHLEAELSRALFEDLTKNLTLSTQEPLKQALKDCGLDPKFIERVILVGGSTRMPAIHRIIQEVFPASQLDRSINPDEAVALGAAIQGGVLGGEVEDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPSSKSQVFSTATDGQTSVEIHVLQGERAMAKDNRSLGKCLLAGIPPAPRGIPQIEVSFEIDVNGILKVSAQDQGTGKEQSIIISHTGGLKPNEIERMQQEAQEYAEEDRRRMQTIELQNQADSLFYTYKTTLEENGDLIRQELKFQSKQRKEQLESALQDPDLSLETLKSYLEQFQQIILLIGTEVYQQGKPYQKSSMFSSMMGEEILTDLNLVMESLETTSMGTSSFVGESLETQTFERTQDYQQTAPMYTHVENEDEDEGFFDFDDDETVASDYEAVD
>NC_013161.1|WP_012593860.1|498966_499752_+|nucleotide-exchange-factor-GrpE
MSRCTHLKLLEKLTMTNEQELQETTLETPELSQPFQETSGEGEIESPEARESTPVEGDSQAVEAEIAEEQAPQEELTPEQIIASLTQEIASLTEKLGQENQQFETLKKRYIAQAAEFDNFRKRTEKEKKELETQVKCRTIKELLPVVDNFERARNQIEPADEGEAVIHKSYQGVYKNLVDSLKRLGVSPMRPEGEPFDPLYHEAMLREPTNDYPEGTVLEQLIRGYLLGDQVLRHAMVKVAAPQEPSVTPEESPAQAEANA
>NC_013161.1|WP_015783160.1|513816_514110_-|CRISPR-associated-endonuclease-Cas2
MNTLFYLIIYDLPATKAGNKRRKRLYEMLCGYGNWTQFSVFECFLTAVQFANLQSKLENLIQPNEDSVRIYILDAGSVRKTLTYGSEKPRQVDTLIL
>NC_013161.1|WP_015783161.1|514106_515084_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MSILYLTQPDAVLSKKQEAFHVALKQEDGSWKKQLIPAQTVEQIVLIGYPSITGEALCYALELGIPVHYLSCFGKYLGSALPGYSRNGQLRLAQYHVHDNEEQRLALVKTVVTGKIHNQYHVLYRYQQKDNPLKEHKQLVKSKTTLEQVRGVEGLAAKDYFNGFKLILDSQWNFNGRNRRPPTDPVNALLSFAYGLLRVQVTAAVHIAGLDPYIGYLHETTRGQPAMVLDLMEEFRPLIADSLVLSVISHKEIKPTDFNESLGAYLLSDSGRKTFLQAFERKLNTEFKHPVFGYQCSYRRSIELQARLFSRYLQENIPYKSLSLR
>NC_013161.1|WP_015783162.1|515116_515707_-|CRISPR-associated-protein-Cas4
MIDNYLPLAYLNAFEYCTRRFYWEYVLGEMANNEHIIIGRHLHRNINQEGIIKEEDTIIHRQQWVWSDRLQIKGIIDAVEEKESSLVPVEYKKGRMSQHLNDHFQLCAAALCLEEKTGKIITYGEIFYHANRRRQRVDFSDRLRCSTEQAIHHAHELVNQKMPSPINNSKKCRDCSLKTMCLPKEVKQLRNSLISD
>NC_013161.1|WP_015783163.1|515832_516642_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MVQDILPQLHKYQLQSLVIELGVAKQGKLPATLSRAIHACVLNWLSLADSQLANQIHDSQISPLCLSGLIGNRRQPYSLLGDYFLLRIGVLQPSLIKPLLKGIEAQETQTLELGKFPFIIRQVYSMPQSHKLSQLTDYYSLALYSPTMTEIQLKFLSPTSFKQIQGVQPFPLPELVFNSLLRKWNHFAPQELKFPEIQWQSFVSAFELKTHALKMEGGAQIGSQGWAKYCFKDTEQARIASILSHFAFYAGVGRKTTMGMGQTQLLVNT
>NC_013161.1|WP_015783164.1|516610_517387_-|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MNIYYCQLTLHDNIFFATREMGLLYETEKYLHNWALSYAFFKGTYIPHPYRLQGKSAQKPDYLDSTGEQSLAHLNRLKIYVFPAKPLRWSYQINTFKAAQTTYYGKSQQFGDKGANRNYPINYGRAKELAVGSEYHTFLISSQELNIPHWIRVGKWSAKVEVTSYLIPQKAISQHSGIYLCDHPLNPIDLPFDQELLLYNRIVMPPVSLVSQAQLQGNYCKINKNNWNDCPSNLTDLPQQICLPLGVNYGAGYIASAS
>NC_013161.1|WP_015783165.1|517529_518600_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSILETLKPQFQSAFPRLASANYVHFIMLRHSQSFPVFQTDGVLNTVRTQAGLMAKDSLSRLVMFKRKQTTPERLTGRELLRSLNITTADKNDKEKGCEYNGEGSCKKCPDCIIYGFAIGDSGSERSKVYSDSTFSLSAYEQSHRTFTFNAPFEGGTMSEQGVMRSAINELDHILPEITFPNIETLRDSTYEGFIYVLGNILRTKRYGAQESRTGTMKNHLVGIAFCDGEIFSNLRFTQALYDGLEGDVNKPIDEICYQASQIVQTLLSDEPVRKIKTIFGEELNHLINEVSGIYQNDALLTETLNMLYQQTKTYSENHGSLAKSKPPKAEGNKSKGRTKKKGDDEQTSLDLNIEE
>NC_013161.1|WP_015783166.1|518672_521597_-|type-I-D-CRISPR-associated-protein-Cas10d/Csc3
MTLLQILLLETISQDTDPILISYLETVLPAMEPEFALIPALGGSQQIHYQNLIAIGNRYAQENAKRFSDKADQNLLVHVLNALLTAWNLVDHLTKPLSDIEKYLLCLGLTLHDYNKYCLGHGEESPKVSNINEIINICQELGKKLNFQAFWSDWEQYLPEIVYLAQNTQFKAGTNAIPANYPLFTLADSRRLDLPLRRLLAFGDIAVHLQDPADIISKTGGDRLREHLRFLGIKKALVYHRLRDTLGILSNGIHNATLRFAKDLNWQPLLFFAQGVIYLAPIDYTSPEKMELQGFIWQEISQLLASSMLKGEIGFKRDGKGLKVAPQTLELFTPVQLIRNLADVINVKVANAKVPATPKRLEKLELTDIERQLLEKGADLRADRIAELIILAQREFLADSPEFIDWTLQFWGLEKQITAEQTQEQSGGVNYGWYRVAANYIANHSTLSLEDVSGKLVDFCQQLADWATSNQLLSSHSSSTFEVFNSYLEQYLEIQGWQSSTPNFSQELSTYIMAKTQSSKQPICSLSSGEFISEDQMDSVVLFKPQQYSNKNPLGGGKIKRGISKIWALEMLLRQALWTVPSGKFEDQQPVFLYIFPAYVYSPQIAAAIRSLVNDMKRINLWDVRKHWLHEDMNLDSLRSLQWRKEEAEVGRFKDKYSRADIPFMGTVYTTTRGKTLTEAWIDPAFLTLALPILLGVKVIATSSSVPLYNSDNDFLDSVILDAPAGFWQLLKLSTSLRIQELSVALKRLLTIYTIHLDNRSNPPDARWQALNSTVREVITDVLNVFSIADEKLREDQREASPQEVQRYWKFAEIFAQGDTIMTEKLKLTKELVRQYRTFYQVKWSESSHTILLPLTKALEEILSTPEHWDDEELILQGAGILNDALDRQEVYKRPLLQDKSIPYEIRKQQELQAIHQFMTTCVKELFGQMCKGDRALLQEYRNRIKSGAESAYKLLAFEEKSNSSQQQKSSEDQ
>NC_013161.1|WP_015783167.1|521654_523760_-|type-I-D-CRISPR-associated-helicase-Cas3'
MKINLKPLYSKLNAGVGNCPLGCQEMCRVQQQAPQFKAPSGCNCPLYQHQAESYPYLTKGDTDIIFITAPTAGGKSLLASLPSLLDPNFRMMGLYPTIELVEDQTEQQNNYHNLFGLNSEERIDKLFGVELTQRIKEFNSNRFQQLWLAIETKEVILTNPDIFHLMTHFRYRDNAYGTDELPLALAKFPDLWVFDEFHIFGAHQETAVLNSMMLIRRTQQQKKRFLFTSATVKTDFVEQLKQTGLKIKEIAGEYKSEAQQGYRQILQAVELSIINLKEEDGFSWLINNAAKIRKILKAEDKGRGLIILNSVVMVRRISQELQSLLPEIVVREISGRIDRKERSQTQQLLQEEEKPVLVVATSAVDVGVDFRIHLLITESSDSATVIQRLGRLGRHSGFSNYQAFLLLSGRTPWVINRLQEKLESKQDVTREELIEAIQYAFDPPKEYQEYRNRWGAIQVQGMFSQMMGSNAKVMQSIKERISEDLKRIYGNTLDNKAWYAMGHNCLGKAIQSELLRFRGGSTLQAAVWDEQRFYTYDLLRLLPYATVDILDRETFLKAATKAGHIEEAFPSQYLQVYLRIEQWLDKRLNLNLFCNRESDELLVGKLFLITRLKLDGHPQSDVISCLSRCNLLTFLVPVDRSRTQSHWEVSYCLHLNPLFGLYRLKDASEQAYACAFNQDALLLEALNWKLTKFYRERSLIF
>NC_013161.1|WP_012593879.1|523911_524160_-|hypothetical-protein
MTNSNKKMLLFQAGTQGWKNPQPNNAIISKRIQPKLTTKELIDLTKIPPHKLPRIGGYLTWKGYFIIHSAKNLWQVCQPLAA
>NC_013161.1|WP_012593880.1|524356_525304_+|WYL-domain-containing-protein
MSSNYNQIAFALEILKLLAEKPRFRQELGDLLTQHLEKQGKSSGDVLQKLTRTIAKLRDCGFEIKSAPNCPYELIESNFPLILSSQQKQALYLATYVLSNMGFSAEAERLGRLYDFLGDEHPHQLHFDFSPPVDYSGEKIRQIIQQLEQRIEQQCRYTIYYQNSRGESRLWDLDRSELRFHNGVLYLFSFVPDWKSYHFPKSPNIEQNILFHINRIQSVLGVSNTRWFYDFPTIKIRYCMTGALANYQPRRSTEQVIEQNLDEKFIIIETIEDCLFWFRQRLLQYGANAQVLEPIWLREQIRDELKKSYENYTQQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_2

603702-603889

Orphan

Consensus_repeat	Method
TAGTTTCAATCCC--TCATAGGGATTATTGCTTATTTTAACT	PILER-CR

2 spacers

The CRISPR arrays of NC_013161_2

>merge|NC_013161|2|603702-603889|PILER-CR
TAGTTTCAATCCCTATGAGGGATTATTGCTTATTTTAACTCTTGATGAACAGCGCAATACCCTGATTTATTGTGGTTTCAATCCCTCATAAGGATTATTGCTTATTTTAACCATATAATAAACTCACTGATGTTGAAAAACAATGTTTTAGTTTCAATCCCTCATAGGGATTATTGCTTATTTTAACT

>NC_013161|2|2|603702-603889|PILER-CR
TAGTTTCAATCCCTATGAGGGATTATTGCTTATTTTAACT	CTTGATGAACAGCGCAATACCCTGATTTATTG
TGGTTTCAATCCCTCATAAGGATTATTGCTTATTTTAACC	ATATAATAAACTCACTGATGTTGAAAAACAATGTTT
TAGTTTCAATCCCTCATAGGGATTATTGCTTATTTTAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015783197.1\|604198_605371_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_013161.1\|WP_015783195.1\|601459_602938_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_013161.1\|WP_012593935.1\|597489_599157_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|213748
NC_013161.1\|WP_015783193.1\|594487_596146_-\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_013161.1\|WP_012593934.1\|596498_597461_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224537
NC_013161.1\|WP_012593937.1\|600139_601231_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012593931.1\|590149_590620_+\|DUF1816-domain-containing-protein	unknown	unknown	gnl\|CDD\|370151
NC_013161.1\|WP_012593941.1\|605375_605882_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_013161.1\|WP_012593942.1\|606146_606722_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374761
NC_013161.1\|WP_015783201.1\|610581_610749_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223560
NC_013161.1\|WP_015783200.1\|609654_610518_-\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NC_013161.1\|WP_015783196.1\|603005_603653_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223092
NC_013161.1\|WP_015783199.1\|609096_609609_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379237
NC_013161.1\|WP_015783198.1\|607362_608958_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173813
NC_013161.1\|WP_012593936.1\|599255_599873_+\|heme-copper-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|224758
NC_013161.1\|WP_015783203.1\|611551_612034_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783202.1\|610732_611524_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_013161.1\|WP_012593932.1\|590644_594439_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_013161.1\|WP_012593943.1\|607048_607273_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783194.1\|601227_601377_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366774

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015783197.1\|604198_605371_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NC_013161.1\|WP_015783195.1\|601459_602938_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_013161.1\|WP_012593935.1\|597489_599157_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|213748	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I. This large family represents subunit I's (CtaD, CoxA, CaaA) of cytochrome c oxidases of bacterial origin. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits I-III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit II and heme a of subunit I to the bimetallic center formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer. In the bacilli an apparent split (paralogism) has created a sister clade (TIGR02882) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c. This model attempts to exclude these sequences, placing them between the trusted and noise cutoffs. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. [Energy metabolism, Electron transport].	0
NC_013161.1\|WP_015783193.1\|594487_596146_-\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	1.0151e-14
NC_013161.1\|WP_012593934.1\|596498_597461_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	1.7617e-72
NC_013161.1\|WP_012593942.1\|606146_606722_+\|hypothetical-protein	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	6.76609e-12
NC_013161.1\|WP_012593931.1\|590149_590620_+\|DUF1816-domain-containing-protein	gnl\|CDD\|370151	pfam08846, DUF1816, Domain of unknown function (DUF1816). Crocosphaera watsonii CpcD is associated with the pfam01383 domain suggesting this presumed domain could have a role in phycobilisomes.	2.17076e-35
NC_013161.1\|WP_012593941.1\|605375_605882_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	9.41794e-15
NC_013161.1\|WP_015783201.1\|610581_610749_+\|hypothetical-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	0.00021907
NC_013161.1\|WP_015783196.1\|603005_603653_+\|hypothetical-protein	gnl\|CDD\|223092	COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0.00987492
NC_013161.1\|WP_015783200.1\|609654_610518_-\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	8.02867e-28
NC_013161.1\|WP_015783198.1\|607362_608958_+\|S8-family-serine-peptidase	gnl\|CDD\|173813	cd07488, Peptidases_S8_2, Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	8.30051e-64
NC_013161.1\|WP_012593936.1\|599255_599873_+\|heme-copper-oxidase-subunit-III	gnl\|CDD\|224758	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion].	4.44811e-64
NC_013161.1\|WP_015783202.1\|610732_611524_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.28741e-20
NC_013161.1\|WP_012593932.1\|590644_594439_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	9.44497e-71
NC_013161.1\|WP_015783199.1\|609096_609609_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.61472e-10
NC_013161.1\|WP_015783194.1\|601227_601377_-\|hypothetical-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.48603e-06

>NC_013161.1|WP_015783196.1|603005_603653_+|hypothetical-protein
MSELLDLPLVQELANIRLNNLDALPDCSAVYLVADDANRVYYVGQSSHLQLSLKNCDRFEDFLAVASKLCWLVCDEAELVEIESDYINYYNPPLNNNIDIENIKKNTIASGMTPEQQLERYLEICTIIKELEKEKEELKQNIVAFVSDYKQQYDTNLQYKGVTFSVSERKSWEYSPTVKELEEKVKKLKKQEEKEGIAKISKVSVYPIVRGELTL
>NC_013161.1|WP_015783195.1|601459_602938_-|signal-recognition-particle-protein
MFDALAERLEDAWKKLRGQDKITENNIQDALTEVRRALLAADVNLQVVKNFIADVEKAALGAEVISGVNPGQQFIKIVYDELVKVMGESNVPLATTATAPTVILMAGLQGTGKTTATAKLALYLRKQKRSCLMVATDIYRPAAIDQLITLGQQIEVPVFELGSEANPVDIARQGVEKAKELGVDTVLIDTAGRLQIDESMMVELARIKEAVKPDDTLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDTRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRILNMGDILSLVEKAQEEIDIADVEKMQSKILEAKFDFNDFLKQMRLMKNMGSLGGLLKMIPGLNKLSSTDIEKGEKELKRTEAMINSMTVEERKNPDLLAKSPSRRRRIAKGSGHAESEVSKLVTNFTRMRSMMQQMGQGGMPAMPGMGGGMPGMGGGMPGMGGMFGGGMGGQVPPGFRGHSGGQKKKKKGKKKKGFGTL
>NC_013161.1|WP_015783194.1|601227_601377_-|hypothetical-protein
MTLSTAKTIKTLYEQDYNLWLETTVKQLELGQFLIISFAVTLNNHNYSH
>NC_013161.1|WP_012593937.1|600139_601231_+|hypothetical-protein
MIFVTPLQWIKKKLRKRVNHQSSISVVNNKLNQELENDLSISVVDQVDQVLDNQASIAIVDNFDQKSNNQSCISALNNINIRVVGDRYSGKTVYMASLAYWPNVNSESPLQSVTSFGDQETSQELFNCAQNILKEGLKLNPKNIDDFCVDQIKDYGLKISLKNYFSEKLSQNRSDFIEFTINCKDYSGEFFRDVIYKSNDPFLKDYLEDFQLADGLLLLVDGTSYRKDQQYAKGLEKFLLYLNQTKLHNPKRRIAFVLNKCELSELWMSRHQPRELVAKRFPQMMATLENWSDQGLGEVEYFTASAFGTLGNDYYQPNTKILAQAHQGTFYMIRHLEKWRPFGLVSPIYWLCTGERHEALDQD
>NC_013161.1|WP_012593936.1|599255_599873_+|heme-copper-oxidase-subunit-III
MQGSAIQESEVTINLHSTGGGHHGGHPDHRLFGIALFLIAESALFLGLFGAFLIYRTVMPVWPPEGTPELELLLPGVNTIILVSSSFVMHKGQAAIKKNDVSGLKLWFAITAVMGIIFLCGQMYEYFHLEMGLTTNLFASCFYALTGFHGLHVTFGLLLILAVLWRSRKEGHYTSESFFGVEAAELYWHFVDVVWIILFILVYLL
>NC_013161.1|WP_012593935.1|597489_599157_+|cytochrome-c-oxidase-subunit-I
MTTVVESSHTAHKERKWTDYFTFSTDHKVIGIQYLVTSFAFYFIGGAFAEVIRTELATADPDFISPELYNQFMTIHGTIMIFLWIVPAGAAFANYLIPLMVGAEDMAFPRLNAVAFWLTPPGGIMLLASFFVSGGAAQSGWTSYPPLSLVSGVWGEEIWILSVLLVGTSSILGAINFVTTIFKMRIPDMDLHSMPLFCWAMLATSALILLSTPVLAAALVLLSFDLIAGTAFFNPTGGGDPVVYQHMFWFYSHPAVYIMILPFFGVISEVLPVHARKPIFGYRAIAYSSLAISFLGLIVWAHHMFTSGTPGWLRIFFMAATMLIAVPTGIKIFSWCATLWGGKLNLNTAMLFGVGFIATFLMGGLTGVMLSSVPFDIHVHDTYFVVGHFHYVLFGGAAMGLFAGFYHWFPKMTGRMINEPLGKMHFALLFIGLNITFLPMHKLGLMGMNRRIALYDVQFEPINLICTIGAYILALSSLPFIINIFWSLVKGEKASRNPWRAYTLEWQTASPPIIENFEEEPVLWAGPYDYGTDLESVNEEETVEDMLAEVGSQSK
>NC_013161.1|WP_012593934.1|596498_597461_+|cytochrome-c-oxidase-subunit-II
MKIPSNIITLLVGIVITLISLWYGQNHGLMPVAASYDATQVDGIFNFMMTIATGLFLLVEGVLVFCLIKFRRRPGDQTDGPPIEGNVPLEILWTAIPTVIVFILALYSFEVYNNMGGLDPIISRDTPPQQIAMDSHNSDIALGIGTSVDETSGISPLIVDVQGMQYAWIFTYPETGIVAGELHVPKNRPVQLRIAATDVLHAFWVPQLRLKQDAIPGRDAMLAFTANLEGNYPIVCAELCGAYHGGMKSTLFVEDEETYAQWVEANKPVQEANLGETVAVNPKNLSDGQFLSPYAQEMGITADSLAQVQPKAHHSHLGHF
>NC_013161.1|WP_015783193.1|594487_596146_-|toll/interleukin-1-receptor-domain-containing-protein
MDTSVLSRIVKSQIHRVVKGIADGKVVFFLGDEINLCGRHKTEEGPLETWRSPEDQVIYAPTNTELALHLDQIFNCKYSIEVIRCPLLPHDIPLDFPDGCPVETDLPEQCPVKTGGIKKMALQQVSQYIDIDDTLDPYGTLPDILWELFDAEYPPNHLHQFLANLPQLIIAKGYPHPYPLIVTACLDNTLERAFKQAQQPFDLVSFVQDRQGSRFVHQKFRSQLKSGNCPQIFATTEPIDIDKPNEYAEDLSLNTYPIILKLYGAIGCGENFVITENNCLDYLAHRDIKSLLPSSLLKQLLNNYILFLGYSPSYWNQRVILHRIWQEEIFSPSSKTWWVIQFKPDLLDRKFWKRYCGQEPINILLDDYVTELEAQIQDLPETSMVKNPNNSPKKSNLYHRDKVFISYSHKDKDWLEKLQTMLMPVIRLGKVSIWDDTQIKPGSNWKQDIENALASAKVAVLLVSPNFLASDFIATEELPPLLEAAEKEGVKILWVYLNYCQYKYTALKNLQATHNITEPLQALSPPEQDKILYEISDEIIEAIQPEDSKLIA
>NC_013161.1|WP_012593932.1|590644_594439_-|hypothetical-protein
MFSLPLIPQLTPIKQRLLKEKPVVYSSAIETSPYKGLMPYCEADAPYFFGRKKWTRIITDNLMSSRLTVVYGTSGVGKSSLLRAGVAYQFKQWIQKNLREFGYPEFAVIVFNAWRDDPVAALLQKVEETITQIIPKVQVPDPNNSLTDTLENWANVLISEEQRSGKLFIILDQFEEYFLYHGYEKGEKTFADQFSQAVNQTGLPVNFIIAIRENALAKLDFFKGSIPHLFTNYLRIPYLDEQAAVDAIRQPIRVFNQHRKLDQHKASHLRTLTLLKGSKTLGLALLWVMMLQERFSQAAIAIETELVQTIIEQVTVGQVYLGNTGRGMIDPKTVTSTQKVIETPYLQLVMTRLWEEDILKRGGNRLQLSTLMELGGAENIVKQHLSERMSRLSRKERNIAAQVFQYLVTPGGTKIAYPILQLAKDIEVTSEELQTLLDKLCQPQQYILRSVGPSPNEPDVERYEIFHDTLAPAILDWRQKYQQRQERNKWRKRTVAASAIALMMTGLFGIAEYQRLQAKVSEIKAIIAHADSLIIANRAFDALVEDLSAYKKFKQTEQDLSIKLLQVIVPRVSAKKQQLKQDIQRLLELGLVSINERNRLIVSEQKVLDVTFSHDGKWLATTSKDGQIKLWDLQGKLIQSLSEDNSEKSYFWRTSFSPDDQLLAAASTSGKINLWSLKDNQIKKLKSLVGHQGWIFDVKFHPTQPILASVSSDGTIKLWRFNGEEFQDKPIESVDVSEINQKNRTNEKPVIRTLRFSPDGKILATATDNGKTSNDPGIITLWIFKDNKLKLLTAFPEKHNDWIWDINFSHDGKMLATASRDGTVKLWNLEGQELKSMGEHNVPFTGVNFAIYGQKKEIIVIGASHDKTIKFWNLEGKELTTLKGHQSAIWRAIFSSDGKTLASASEDGTVKLWTLNDQDILGHKGRISQVSFNPDGQTLATAAEDHTVKLWRFDGKNTDNLQYLKTIQAHTNEVRSVDFSPDGSLLATASFDKTAKLWNWNLETDKPLSTFNKHTAELWKVEFNPKLSILGTVSNDGTAKLWKFDGTMHRNFNNFLQEDPDKVISLSFSPDGQKLATARWVRVNSKKIDVMLWDVNGLEKPIQKFPSLQTNWLKDIDFSADGSMIATSSKDGTVKLWSLNGEDQTPYQNNYPKINHNNSTISSVSFSPIQPLLLTASDDQTVKLWTIDGKLQQTFFGHQGAVLSATFSPNGQFIASSGSDGKVILWKRDLTLEELLQKTCNWLGGYLENNPDVEPQNKSLCQDQ
>NC_013161.1|WP_012593931.1|590149_590620_+|DUF1816-domain-containing-protein
MATNNDANSRFFLYEVAIQPQSGGFNKIKGLIYQEGKIFLKVPYGRMKQEMKRIQRLGGKIVNITPITEISSLKESLDLIEPEIEEISVVSLGLPWWVEISTTHPNCLYYFGPFDSAEEALSYQDGYVEDLREEGAQNITLYIKQCQPQVLTQEWD
>NC_013161.1|WP_015783197.1|604198_605371_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MDGMTIKRVGVIGGGQLAWMMDEAAQQLGIDLVIQTPSQDDPAVSISAEVIFAPIADATATAQLATRCDVITFENEFIDLEALQKLEAKGVCFRPSLGVLAALLDKYEQRCYLKQIGVPVPQCATLDSSSTPEFSFPLVLKTRRHGYDGQGTFIIQSLDELDSIFRRLEGVSLMIEEFVPFERELAVMASRSVTGEIIVYPVVETYQQNQVCHWVIAPAAVSEAIKAEIEQIARHLLTQLGVVGIFGIELFLTSQGQVLVNEIAPRTHNSGHYTLDACETSQFEMQLRAVAGLPLGSPKLKALGTVMVNLLGYEQSHHDYKQKREQLAAIPGVHVHWYGKTESRPGRKLGHVTVLLGEINDSLTDEMLREQLLGTVKKIESIWYESDSRE
>NC_013161.1|WP_012593941.1|605375_605882_-|pentapeptide-repeat-containing-protein
MKYLVRLILILLCCVFLSSPLSALAASSASVTAGVSSFEDIKLVGQDFSRQDLKEVKFANADLTEANFSDSDLRGAVFNGVELKQANFHGANLTNGLAYLSSFRDADLSDAILSEVIMLRTVFDNANITGADFTLAVLDGEEVAKLCQRADGVNSKTGMSTRESLGCL
>NC_013161.1|WP_012593942.1|606146_606722_+|hypothetical-protein
MKRKDESSQTNSAKELPIWQMLLLIFLRYIIGGIVGLFGLMFVLLMVVGFGPPGEQRNHRPHPKILLGAINRAQQGYYTEHKQFASTWDDLGIRRPSTKDFEYHFFAILDGKLTGVVIAKGIDNKKIESRDYIAGVNYNRKYKIFNTIVCRASDQLKSQNYQITNPEQAISNYGVVDQSTMICGEGLMEIK
>NC_013161.1|WP_012593943.1|607048_607273_+|hypothetical-protein
MVYYWNLVRPRFPNIQVRLQQIETFSASPSVALGPAMWLSCSLEDKCREKRLYCSQLYGHDLSLDLCTDCLDSQ
>NC_013161.1|WP_015783198.1|607362_608958_+|S8-family-serine-peptidase
MNKSITWLAGSLSVFGIIVPSLALDNSIGEAGINAHRLHEQPHNLTGRKIAIGQVEIGRPGQFGLDKVAAWNPSFRLAGVYFRNKNVTANGNLDNHAAMVATVMVSRDKRIPGVAPDARLYSAAVGALKQGGQPEECLASQHIAQQNSGDVRAINFSFGESLQQDPRENAKLDGNALLTQCIDWSARVHDVLYVIAGNQGKGGIPIPTDHYNGITTAYTAKRQGQFSKVDFANLSALPQGIGRRLIKREINVGTRRSISLVAPGNKIALYDLSGKISEVSGTSFAAPHITASVALLQEFGDRQLKTKQPNWSLDSRRHQVMKAVLLNSADKLTDQGDGLLLGMVRTVLSKRNQTWLESDAYQDPQIPLDIEMGTGHLNAFRAYQQFSAGQWKPDSGVPSLGWNYETISYQKQHDYVIENPLPKGSYVSITLVWDRHVELKDTNNNDQYDIGETFSDRGLNNLDLYLLSATDQTTTKSTCSSVSKVDSTEHIFCQVPATGLYKIRVDYPQLIHQQTQPYGLAWWTFSPKTNP
>NC_013161.1|WP_015783199.1|609096_609609_+|GNAT-family-N-acetyltransferase
MSKQIKQVDLVPFCQEEDSDRIQFWLNTPHVKKWWINPDNHFNNILNHPSSDHGIIIADGIKVGYLRWQKVDMLELASVGITTIPEGSIDIDIFIGEKDYIGCGIGSRILKQLVNQLAQDTTIPLIGMATSVDNFIAIKAYQKVGFRCLFQFDSPTYGRCWILALNPQES
>NC_013161.1|WP_015783200.1|609654_610518_-|inositol-monophosphatase-family-protein
MVLAPQPRLILKTLLPHLKVAAAYARQLQSKITSLPAKLESDNFLGAALTDADISIQNLVEVVLLGTFPQIRFYGEEYQKSANTKYFRATDFGEFGDYLVTLDPIDGTQFYLDGHQNYQIILSVLNTDDYEAVITLSPAINHYCYALRGQGVFEGTFEVEFENCKPLQKIPSKAAILLGWGMEKLKPFLINKYPVIDIATSYSKQRQIPNVNGLLGGELSGAIIRSGNLIDSAALAFMAKEAGYLVTLFDGSPVPPLNTCKNYKLPGLVIACDSSIHQNLLTAVKQI
>NC_013161.1|WP_015783201.1|610581_610749_+|hypothetical-protein
MNHQSSTLKTSNLICHHCEGKGYSVIRDCTGEIQREETCLFCRGTGKKQDDEPED
>NC_013161.1|WP_015783202.1|610732_611524_+|tetratricopeptide-repeat-protein
MNRKINLSNFLLFLSLILGCFVFLGCSTNSSQSIPKTSEIPITKNQKPIETTAPTTTAEDRKNAANLRQLGLQYRQQENYPKAIESLEKSVSLDSKNLSGLVLLGWTLHLAGKSPSAQQTLEHALTINSQHIETLNALGIVYLVQGNLEQAIATHTKAVTINPNNEIAHYNLNLAYQRLQQYTKAIKHGQQAIKLEPHNPHPWVALAITYWEMGDRKKSHETYRQAVNLDSRYRQFNFLYHLKQAGFSQEQIKQTQKVLESLF
>NC_013161.1|WP_015783203.1|611551_612034_+|hypothetical-protein
MKVNYYLTIVGLFISILILDFLNFKKLTAKETINLVPTEITRVNLTTSEQSYPAKARFWGLVANGVNQVSTVTLNSNSNQRLVVTIILPENCRRVFQITETKITKVIHDCPSQKIDESSQYAEWIAFHNTTTREVQMIAPPIKVENPLYIRKQAFWLIQY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_3

827748-827845

Orphan

Consensus_repeat	Method
GTTGAGGAAGAAGAAGACATTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013161_3

>merge|NC_013161|3|827748-827845|CRISPRCasFinder
GTTGAGGAAGAAGAAGACATTGAGTCCCCAGAACTCAACCTTGAGGAAGAAGAGATTGAACCTTCAGAACCCTCTGTTAAGGAAGAAGAAGACATTGA

>NC_013161|3|2|827748-827845|CRISPRCasFinder
GTTGAGGAAGAAGAAGACATTGA	GTCCCCAGAACTCAACCTTGAGGAAGAAGAGATTGAACCTTCAGAACCCTCT
GTTAAGGAAGAAGAAGACATTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_012594149.1\|825249_826119_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-iron-sulfur-ATP-binding-protein	unknown	unknown	gnl\|CDD\|177011
NC_013161.1\|WP_012594154.1\|830961_831555_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227672
NC_013161.1\|WP_015783339.1\|835004_835922_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|215315
NC_013161.1\|WP_012594148.1\|824713_825088_-\|DUF5331-domain-containing-protein	unknown	unknown	gnl\|CDD\|375088
NC_013161.1\|WP_012594153.1\|828424_830878_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_013161.1\|WP_012594156.1\|832040_832886_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NC_013161.1\|WP_015783333.1\|821128_822106_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_013161.1\|WP_012594155.1\|831614_831968_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227726
NC_013161.1\|WP_012594160.1\|836114_836645_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_013161.1\|WP_012594146.1\|822323_823034_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783334.1\|823308_824709_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-subunit-N	unknown	unknown	gnl\|CDD\|214353
NC_013161.1\|WP_015783338.1\|834426_834915_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012594142.1\|818155_818659_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783340.1\|836981_837458_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783336.1\|827018_827216_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783341.1\|837454_838399_+\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NC_013161.1\|WP_015783332.1\|819754_820819_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375541
NC_013161.1\|WP_015783337.1\|832891_834190_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NC_013161.1\|WP_162013563.1\|826810_826975_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224913
NC_013161.1\|WP_012594143.1\|818720_819533_-\|carbon-dioxide-concentrating-mechanism-protein	unknown	unknown	gnl\|CDD\|226943

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_012594149.1\|825249_826119_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-iron-sulfur-ATP-binding-protein	gnl\|CDD\|177011	CHL00072, chlL, photochlorophyllide reductase subunit L.	0
NC_013161.1\|WP_012594154.1\|830961_831555_+\|hypothetical-protein	gnl\|CDD\|227672	COG5381, COG5381, Uncharacterized protein conserved in bacteria [Function unknown].	3.24788e-29
NC_013161.1\|WP_015783339.1\|835004_835922_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|215315	PLN02578, PLN02578, hydrolase.	8.06924e-64
NC_013161.1\|WP_012594148.1\|824713_825088_-\|DUF5331-domain-containing-protein	gnl\|CDD\|375088	pfam17265, DUF5331, Family of unknown function (DUF5331). This bacterial family of unknown function can be found in Cyanobacteria.	6.69299e-62
NC_013161.1\|WP_015783332.1\|819754_820819_+\|hypothetical-protein	gnl\|CDD\|375541	pfam18087, RuBisCo_chap_C, Rubisco Assembly chaperone C-terminal domain. This is the C-terminal domain, also known as the beta domain, of Rubsico Assembly Chaperone protein (Raf1). Raf1 is necessary for rubisco to catalyze the rate-limiting step of carbon fixation through carboxylating the five-carbon sugar substrate ribulose-1,5-bisphosphate. The beta domains primary function is dimerization, which is critical for Raf1 to achieve the necessary avidity for complex formation with RbcL (the large complex sub-unbit of Rubsico) assembly intermediates. The beta domain is also involved, to a small extent, in binding to RbcL with use of the lustiness near the beta domain's conserved top surface.	3.7522e-65
NC_013161.1\|WP_012594156.1\|832040_832886_-\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	3.54389e-37
NC_013161.1\|WP_015783333.1\|821128_822106_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NC_013161.1\|WP_012594155.1\|831614_831968_+\|hypothetical-protein	gnl\|CDD\|227726	COG5439, COG5439, Uncharacterized conserved protein [Function unknown].	6.47339e-31
NC_013161.1\|WP_012594160.1\|836114_836645_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	3.57982e-91
NC_013161.1\|WP_015783334.1\|823308_824709_-\|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-subunit-N	gnl\|CDD\|214353	CHL00073, chlN, photochlorophyllide reductase subunit N.	0
NC_013161.1\|WP_015783341.1\|837454_838399_+\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	6.50734e-31
NC_013161.1\|WP_012594153.1\|828424_830878_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	7.25584e-59
NC_013161.1\|WP_015783337.1\|832891_834190_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NC_013161.1\|WP_162013563.1\|826810_826975_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|224913	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription].	0.000334826
NC_013161.1\|WP_012594143.1\|818720_819533_-\|carbon-dioxide-concentrating-mechanism-protein	gnl\|CDD\|226943	COG4577, CcmK, Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion].	1.14311e-48

>NC_013161.1|WP_015783336.1|827018_827216_+|hypothetical-protein
MSKSTRFVLSSFAIPFIISLVITLTVYILRGMRILGFLPGGVVLILIAVSIILGILYTRQATRRF
>NC_013161.1|WP_162013563.1|826810_826975_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MFMTEKGTITKITDGGRIVIPPEYRPALSFNIGDDVIIILEEGTIEEIEYPTVA
>NC_013161.1|WP_012594149.1|825249_826119_-|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-iron-sulfur-ATP-binding-protein
MTLTLAVYGKGGIGKSTTSCNISTALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQEKDFHYEDIWPEDVIYKGYAGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFDEYDVILFDVLGDVVCGGFAAPLNYADYCLIVTDNGFDALFAANRIAASVREKARTHPLRLAGLIGNRTSKRDLIDKYIEAVPMPVLEILPLIEDIRVSRVKGKTLFEMTESDPSLDYVCNYYLNIADQLLAMPEGVVPNDAPDRELFTLLSDFYLNPQTPVKSQEEELDLMMV
>NC_013161.1|WP_012594148.1|824713_825088_-|DUF5331-domain-containing-protein
MITFEEIKATLPDKWLLYYTTNHSWIKPLMDNRKWWHKTPDDGKRPCADIILGAITALEPQLSFWMPPFCKLNSDGNKLIEVLGLNFDPEKELKKRSEQSSKLSIKSDDQFMRQIREQNKQGED
>NC_013161.1|WP_015783334.1|823308_824709_-|ferredoxin:protochlorophyllide-reductase-(ATP-dependent)-subunit-N
MTALQEPTALQFECETGNYHTFCPISCVAWLYQKIEDSFFLVIGTKTCGYFLQNAMGVMIFAEPRYAMAELEEGDISAQLNDYEELKRLCLQIKRDRNPSVIVWIGTCTTEIIKMDLEGLAPKLESEIGIPIVTARANGLDYAFTQGEDTVLAAMAHKCPQSVKAEEEKEERNAIHKLLNFGRKKEDIKQEESEYVDHPPLVLFGSLPDPVVTNLTLELKKQGVKISGWLPSKRYTELPVIDEGYYVSGVNPFLSRTATTLMRRRKCKLIGAPFPIGPDGTRAWIEKICSVFGIQPQGLEEREAKIWESLEDYLQLIRGKSVFFMGDNLLEVSLARFLIRCGMTCHEIGIPYMDKRYQQAELAFLEKTCQEMGVPIPKIVEKPDNYNQIQRIYELKPDLVITGMAHANPLEARGINTKWSVEFTFAQIHGFTNARDILELATRPLRRNNNLKELGWEKLVREEANV
>NC_013161.1|WP_012594146.1|822323_823034_+|hypothetical-protein
MKVIKYLSITQLIVYLLLNFIIANNDSASAQSPAYNNLTLDIQQKLETDIDKTIELTYRSVKITDQQKAIKVFLEVTLRKLSGGFGYNYSQTPLIKVMIEQNNNLRVVTRNFGLETNHYNFDLFPLAFSPNNRYLLIAGGAMATDYTFHKIVDLGNNDTTINMNLCPIETYEGFVSNIEIVFSCSDFGMGEDFIAILNLQDKTVTKKRKGSLKQINLLPRSYIFTDQPKVIKIQKF
>NC_013161.1|WP_015783333.1|821128_822106_+|quinolinate-synthase-NadA
MFTTVRPQSTLTTPTANLIPNDLFTAINELKKDLNAVILAHYYQDPDIQDIADFIGDSLALSQQAASTNAEVIVFAGVHFMAETAKILNPDKLVLLPDLNAGCSLADSCPPEAFAQFKAQYPGCLVVSYINCTAEIKAMSDIICTSSNAVKIVNQLPKDRPIIFAPDRNLGRYVMEQTRRELILWQGSCMVHETFSEKKIVQLKIEYPEAEIIAHPECEPSVLRHANYIGSTTALLNYSQQSASQIFIVATEPGIIHQMEKETPHKRFIPAPAINNCACNECPHMRLNTLEKLYLAMKFKQPEITMDETIRLAALRPIQRMLEMS
>NC_013161.1|WP_015783332.1|819754_820819_+|hypothetical-protein
MNEHPQLSPEQANQLLRSLLEKQGSWVDWGQACYQLQQAGYNGQSIFEQTGFQSSQQNLIIVASQVYESLVNTGVAEEVLSYYRGPKSDVLYELRILNQDQRAIVAELAREKTLEATEAKEVAKTFQAFNRLSQVPEAFTNHPGDAMAHQCWKQARQKKDLQDRTRLIAKGLKFAHSATARSAIEKLLMDFTVVPARSAPLLPLYRLEQESDISRIIAVVGSLPLSQNDLNRVENLVGVDSFNVVSYSGTGSLVSLPGWQAILKADDPVAILCSSDRLPKSIPGPTETVLVVVDRSLQNWDVNSYFLVEENEELMFKWFEEDPNITLLGQIIIVVRPKKIFDENNILEPWQMDD
>NC_013161.1|WP_012594143.1|818720_819533_-|carbon-dioxide-concentrating-mechanism-protein
MTRLAASSQRRATQPDMKSSRLPSDSALGLVSTHSFPAIVGTADMMLKSSDVTLVGYEKIGSGHCTAVVRGKVANVRLAVEEGAKTAEQFGQLISKLVIPRPMPNLEAIFPIGSRLVELAQQKQGYSRLSNRSIGLLETRGFPAMVGAADAMLKSADVQLASYEIIGDGLCTAIIRGSVANVAVAIEAGIQEAEKIGELHAVMIIPRLLEDLEHTLPVANCWIEQPEALPMLMPKTVKERQRELIALPELEKKPLAFKKAVEIDQTELLE
>NC_013161.1|WP_012594142.1|818155_818659_+|hypothetical-protein
MSQAIEIPNLDILAQELAAIQQTGSKRIALLGSRHVPITHQQLIEMMSYALVLGGNRLMTSGATGTNAAAIKGAMRADPNLLTVILPQSLERQPRESREQLQQVVHLVENPENDSLSLGEASALCNREIISRCQQLICFAFHDSHTLLQTCAEAEEQRKLVTLFYFD
>NC_013161.1|WP_012594153.1|828424_830878_+|SpoIIE-family-protein-phosphatase
MNHWRILLTKKWANLSLRAKIILAFFSLMIVSTTTVTVFSYRVLRIELTAQVGKDLQKQATKLAQQVSNLLINQVDQVTLISLSNVFQNELNLINSRYPKNQNTIQQEIQKNSQIWHQSKKSNRLLGNYLNNPISRELREYQKHFPNNYQIFVTDKYGAIAGTTNLNLEYNQGEKQWWQQTWNNGRGAVYIEEPQYNQENLLLLVNIAVPIYKRSNSQASEVIGIIHTSYKISHALLPLLQNINSGKTGHAYLFVSPKKYFSDYKFVNETNQELTKFISSLASYKEIKYQGEKRFFSKASVQPKNQEFSLLNNLPWLIIIYQDSSEILHPLIIARQTIMMAALGTLLVAGILASFIERLISTPIRVLTKITQRIASGDLDYEIDLEQKDEIGLLAANFNIMVESLKSYFSKLRTSLKELSDMKFALDQSVLVTVMEPNGRITYVNDKFCEISQYSRQELIGNNYRFLKSRYHTPEFYQSIWDTLNQGNIWRGEIKNQTKDGSYYWVDSTMVPFLDENNKPFQYLAIRYDITARKDFEEALSQKVKERTDQLAQANQEIIQLNHQLQGENLRMSAQLNVARQLQQMVLPKPEELAAIKGLELAGFMEPADEVGGDYYDVLATDDVVTISIGDVTGHGLESGILMIMTQTVVRTLKEIREHDPVKFLDTLNRTLYRNIERMNSDRHLTLAVLNYSHRRVSLSGQHEEVIFVRAGGELQRIDTMNLGFPIGLDQNITDFIDQISLELQTGDGLVLYTDGITEAKDINKNHYGIERLCQVIQQNWEKSAQQIQELVIQDLHEHIGQQKIFDDITLFVLKQK
>NC_013161.1|WP_012594154.1|830961_831555_+|hypothetical-protein
MTKTFGSYILNFPHTNNSLELIFNPTSSSIKKIWRNNRLSAHFIADYFSNFLPIDENNPAYKQRVKNSKGAVSYVANELLENTMKFSDPNSDHDIKIGVHFLNNSEFTVTVFATNAMAAQDIDKFQYFIQELLSCEPDEFYVRQIEKSLSEEEEEESSGLGLVTMMMDYSAKLGWKFETCPKDPKIVLVTTMVQIVL
>NC_013161.1|WP_012594155.1|831614_831968_+|hypothetical-protein
MSVQEIAGDDYTIKYDPEAVIVNFYGELALGGPKDYQPITDFLNEIADSEPQKITLDVRELNFLNSSGISMLSKFVISFRRKENINLTVLGSNEVPWQGKSLSNLKKLLPSLELITD
>NC_013161.1|WP_012594156.1|832040_832886_-|M23-family-metallopeptidase
MSSELLLVLFVSLVPPLVNLAQTPPSSLCPAPILSRLERHRVVTGETLASIAQAYNLFPETLIQLNPSLKGGAVQVGQEIVIPPFNGIRVEVPKGASWQDLATAYGLRADVLFELNGCVKTPKVVFIPGVNWQTSQGTRKNDYTGLKGYPLQAPAQVGLAYGWHTNQTTGQSFFHGGIDLLAEPGTPVLAADAGEVIFASQEGTYGFLVVVDHGNSRQTRYAHLSRFQAKIGQSVRQGDIIGYVGTTGRPDIPQSHLHFEVRYRFPVGWVAQDPTTHLPSP
>NC_013161.1|WP_015783337.1|832891_834190_-|homoserine-dehydrogenase
MVVKIGLLGLGTVGTGTAQILLDPSGRNPLLKDITIHRVGVRSPDKPRSVQFPPEVITSDLEAIVNDPEIDIVVELLGGLEPARSLILQAIAQKKHVVTANKAVIARYGDEIYNSANQAGVYVLLEAAVGGGIPIIKPLKQSLGANRITQIIGIINGTTNYILSEMTTAGADFSDVLAEAQRLGYAEADPTADVDGLDAADKIAILASLGFGGRVQREDVYCEGIRQVSAADIAYADKLGFVIKLLAIAKGSGGQESQTLELRVHPTLVPKDHPLASINGVYNAILVAGDPLGQVMFYGPGAGSGPTASAVVSDIMNIVAILKSSGQTPTLDPLLSCVHQHFCQITPIEGIKSRFYARFLTGDLPGVIGHLGMSFGNHQVSLESVVQIGFQGELAEIVVVTHNVGEGNFRAALAEIRTLEAIKSIPSILRVL
>NC_013161.1|WP_015783338.1|834426_834915_+|hypothetical-protein
MKKLTQVFLVLGGVVGFLVLSGSPALGQPNPSCYMINQSGQVMDLSAICHKGISQSTAESNQTPQASEFRSYSQVHNYDNTSQDWDRDLPSSYQGYSLYSTRFPDDGSGTGQRIYSRVENRPSIITYSKKTWEPGYDPSTPEGQQAQYDLTIRTVRVLDYLR
>NC_013161.1|WP_015783339.1|835004_835922_-|alpha/beta-fold-hydrolase
MLDQQPWEKRIGRQRDWIWQGWQIRYSYLHCPIKSISQQKPPLILLHGFGAAIEHWRHNIPILAEKHSVYALDLLGFGGSQKAAADYSAYLWAQQVYDFWRTFIRQPVILVGNSIGSLVCLTVAATYPEMVAGMAMLSLPDVSLRQEMMPRWLEPIVTSLESLFAPPFVIKGLLRILRRPSIIRPWVTLAYCDRSAITDELVEIISLPAYDQGAARTLCLLVEGARNPKFAPSAKVILPQLTIPMLLIWGKEDRFIPPSLAPMFAQLNSRITLVELDQVGHCPQDESPDRFNPILLDWIDSKVII
>NC_013161.1|WP_012594160.1|836114_836645_+|translation-initiation-factor-IF-3
MIDKRRPQRDLPKINERIRFPEIRVIDSDGSQVGVITPKEALSLAQEKELDLVLVSETAKPPVCRIMDYGKYKFEQEKKAREAKKKQHTADVKEVKMRYKIGESDYNVRVNQAKRFLKSGDKVKATVTFRGREIQHANLAQELLERMAKDLEELAEIQQAPKREGRNMMMFLTPKK
>NC_013161.1|WP_015783340.1|836981_837458_+|hypothetical-protein
MKNFRLLLKLLGLSCLLILTNTMVKAESEINSSLLSELEKNRQLWRSQEITDYQFIYQQQCFCPPPANTLLKVLIDQNNISQVLNLKTGQPLDNSQFNQVKSIEQLFTILEEAIKQNADEITVTYDSQLGYPTKIAIDYKKIMADEEQGYLIKDLQKL
>NC_013161.1|WP_015783341.1|837454_838399_+|UPF0104-family-protein
MSKSSLIRSVSKVLPIALAVLLLSVSIKTIIHEFKDHSWQSIWQYLQTISNTRKMASVALTGLGYLAMTGYDILGFQYINQVLAPAKIAGTAFISYAVGNTIGFSAFSGTAIRYHFYSSWGVSKLKIAQLIVFTHLTFWLGLFGVSGVVFLVDPLTLPKVLKLPFNSVHPIGFIFLALVAIYFVIGYFWNSSLRIGSEEIVFPSSEMSLQLIGLAAVDWGLACGVLYLLLPLDHSMSYPGFFGIYILALTAGLMSTVPGGLGVFDTVILLLRPDSISAPDILGALIAYRIIYYILPLIMALGLFMIQHFQRTKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_4

910346-910959

Orphan

V-U2

Consensus_repeat	Method
GTTTCAATCCCATTACTAGGATTCATTAATAA--GAAAC	PILER-CR
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	CRISPRCasFinder
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	CRT

8 spacers

csa3

The CRISPR arrays of NC_013161_4

>merge|NC_013161|4|910346-910959|PILER-CR,CRISPRCasFinder,CRT
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACGCGGCCGCGGAGTGTGGCTAACCTGGCTTGGCTAGTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACGTTTATCAGGTTGGTAATATTGGACCGACCTCAAGTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACGATAAAACTTCCTCGCCACGGGAAACCACCGCCAGGTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACTCATCAATTCCGTTGCTATTTTTGTCTTTATGTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACATTTTGGGCTGCACGCAGATCGAGGCAATAACGGTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACTAGTCAGGATTTGATCCTTGATCTCTACCAGAAAGTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACCCAACAATTTGAAATGAAACGGATGGCTGATGCAGCCGATAAGTTTCTTATTAATGAATCCTAGTAATGGGATTGAAACAGAAATATAAACGCACTAAAGATATTAAGGATTATTATGTTTCTTATTAATGAATCCTAGTAATGGGATTGGAAT

>NC_013161|4|3|910346-910884|PILER-CR
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GCGGCCGCGGAGTGTGGCTAACCTGGCTTGGCTA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GTTTATCAGGTTGGTAATATTGGACCGACCTCAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GATAAAACTTCCTCGCCACGGGAAACCACCGCCAG
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	TCATCAATTCCGTTGCTATTTTTGTCTTTAT
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	ATTTTGGGCTGCACGCAGATCGAGGCAATAACG
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	TAGTCAGGATTTGATCCTTGATCTCTACCAGAAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	CCAACAATTTGAAATGAAACGGATGGCTGATGCAGCCGATAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC

>NC_013161|4|3|910346-910959|CRISPRCasFinder
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GCGGCCGCGGAGTGTGGCTAACCTGGCTTGGCTA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GTTTATCAGGTTGGTAATATTGGACCGACCTCAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GATAAAACTTCCTCGCCACGGGAAACCACCGCCAG
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	TCATCAATTCCGTTGCTATTTTTGTCTTTAT
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	ATTTTGGGCTGCACGCAGATCGAGGCAATAACG
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	TAGTCAGGATTTGATCCTTGATCTCTACCAGAAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	CCAACAATTTGAAATGAAACGGATGGCTGATGCAGCCGATAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	AGAAATATAAACGCACTAAAGATATTAAGGATTATTAT
GTTTCTTATTAATGAATCCTAGTAATGGGATTGGAAT

>NC_013161|4|2|910346-910959|CRT
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GCGGCCGCGGAGTGTGGCTAACCTGGCTTGGCTA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GTTTATCAGGTTGGTAATATTGGACCGACCTCAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	GATAAAACTTCCTCGCCACGGGAAACCACCGCCAG
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	TCATCAATTCCGTTGCTATTTTTGTCTTTAT
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	ATTTTGGGCTGCACGCAGATCGAGGCAATAACG
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	TAGTCAGGATTTGATCCTTGATCTCTACCAGAAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	CCAACAATTTGAAATGAAACGGATGGCTGATGCAGCCGATAA
GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC	AGAAATATAAACGCACTAAAGATATTAAGGATTATTAT
GTTTCTTATTAATGAATCCTAGTAATGGGATTGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_012594228.1\|916480_917563_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_013161.1\|WP_012594223.1\|911170_911680_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|366663
NC_013161.1\|WP_012594213.1\|900689_901079_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_013161.1\|WP_012594232.1\|920631_920907_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012594227.1\|915764_916451_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783372.1\|911876_912758_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|224938
NC_013161.1\|WP_012594225.1\|912933_913956_-\|long-chain-acyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|184944
NC_013161.1\|WP_015783369.1\|904263_905304_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_013161.1\|WP_012594219.1\|905434_906544_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NC_013161.1\|WP_015783371.1\|908251_910099_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NC_013161.1\|WP_015783367.1\|901075_901249_-\|metallothionein	unknown	unknown	gnl\|CDD\|366903
NC_013161.1\|WP_015783374.1\|919987_920428_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012594217.1\|903549_904194_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_013161.1\|WP_015783373.1\|918263_919973_+\|DUF3352-domain-containing-protein	unknown	unknown	gnl\|CDD\|371750
NC_013161.1\|WP_012594220.1\|906732_907173_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NC_013161.1\|WP_012594226.1\|914243_915419_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012594229.1\|917727_918087_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238786
NC_013161.1\|WP_015783368.1\|902375_903452_+\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|225201
NC_013161.1\|WP_012594215.1\|901416_902388_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_013161.1\|WP_015783370.1\|907202_907904_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_012594228.1\|916480_917563_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.29214e-134
NC_013161.1\|WP_012594223.1\|911170_911680_-\|transcriptional-repressor	gnl\|CDD\|366663	pfam01475, FUR, Ferric uptake regulator family. This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.	1.46475e-47
NC_013161.1\|WP_012594213.1\|900689_901079_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	3.87329e-20
NC_013161.1\|WP_015783372.1\|911876_912758_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	6.91437e-51
NC_013161.1\|WP_012594225.1\|912933_913956_-\|long-chain-acyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|184944	PRK14982, PRK14982, acyl-ACP reductase; Provisional.	0
NC_013161.1\|WP_015783369.1\|904263_905304_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.91618e-111
NC_013161.1\|WP_015783368.1\|902375_903452_+\|WD40-repeat-domain-containing-protein	gnl\|CDD\|225201	COG2319, COG2319, FOG: WD40 repeat [General function prediction only].	1.08289e-26
NC_013161.1\|WP_015783371.1\|908251_910099_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	4.3699e-44
NC_013161.1\|WP_015783367.1\|901075_901249_-\|metallothionein	gnl\|CDD\|366903	pfam02069, Metallothio_Pro, Prokaryotic metallothionein.	5.41379e-18
NC_013161.1\|WP_012594217.1\|903549_904194_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	7.49459e-122
NC_013161.1\|WP_015783373.1\|918263_919973_+\|DUF3352-domain-containing-protein	gnl\|CDD\|371750	pfam11832, DUF3352, Protein of unknown function (DUF3352). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 538 to 575 amino acids in length.	1.1721e-172
NC_013161.1\|WP_012594220.1\|906732_907173_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	4.24121e-59
NC_013161.1\|WP_012594229.1\|917727_918087_-\|hypothetical-protein	gnl\|CDD\|238786	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.	9.23708e-41
NC_013161.1\|WP_012594219.1\|905434_906544_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NC_013161.1\|WP_012594215.1\|901416_902388_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	6.13166e-129

>NC_013161.1|WP_015783371.1|908251_910099_+|polysaccharide-deacetylase-family-protein
MSSSLVQWWSLKRVILCSSSLLISGYGILAVKSIKFDQTTQAIASTSNPNSNTSDCQSPTSNLSSSSQWLSASAPKTLNQSSPLTPIDCITAVLPFEQGSTNRKIIISPKTFPDLWNAAKNTLNQLPKPFPTIHEQARIAKVPILMYHDILPKKEVFFDVTPQELEAHFKLIQAQGITPISVDLLLEHLQKGVPLPDKPVLLTFDDAYGGHYHYVYPLLKKYGYPAVFSVYIKKMDGKTKRTSLTWEQLKEMSIDPLVTIASHTISHPRDLRLLSDDQLFQEIIISKKILEEKLGIAIRYFTYPEGKLDPRVKQWVMSGGYEMAFSMDDNKEIFAGDSPDLLTIGRFGQSQIQQVINQAWGGYPTAKLPDEFDFLAPIRKFDHQIEGTNLIIISGGKPSTIHADSRYQVPEIIKGTEAIAAVDGAFFSLEYLDSNVMIGPVMSQGKTFIPGNKSENPLLNGRPLVLISDQWVRFIPFDANRHNTLNGIQTEFEDGELITDVFVAAAWLVKNSQPQPRENFGNLFDFDVPRHRAFWGIHQSGQPMIGVSKDPVDSVKLGRILQKLGFREAVMLDSGASTSLAYHGESLVAYIPRPVPHVVTLLPQWELLVSQQERD
>NC_013161.1|WP_015783370.1|907202_907904_-|hypothetical-protein
MNRLLKGLAISVLAVTLGIINPVSATQWVYLGTSQDNYSYYLDFDSLKGTGNSRSFWVKRVNNYGETESLIKSSIDCHYRQIGVIESIRYNVDGSVRSHDIIDSNIGRTWAFAPGTIAQTYYDFVCSRITLQPEPQIAMTTHEYPKAACGDPSNSTLGRQRWYPVFVDYSPEDLRYIKKNLCRDAFRITRQDGSLSIQVASFTTRRNAEKFAAFLEQELGNSEVGNPTIIVIR
>NC_013161.1|WP_012594220.1|906732_907173_+|SufE-family-protein
MSASSTPLPPNLENIVQKFKRREDPKKRYEQLLWYAKKLESMPEDGKIPENKVQGCVSQVYITAALKDGKVWYQGDSDAQLVKGLVAFLIEGLNGLTPGEILQVTPDFIEETGLKVSLTPSRANGFYNIFQLMKKKALGLQLETSV
>NC_013161.1|WP_012594219.1|905434_906544_-|hydrogenase-formation-protein-HypD
MKFVDEYRDATLAQQYAQKIAEITTKKWIIMEICGGQTHSIVKYGIDALLPPEITLIHGPGCPVCVTPIELIDYALAIASLRDIIFCSFGDMLRVPGTDKDLLTVKANGGDIRIVYSPLDCLKIAQDNPKKQVVFFAVGFETTTPATAMAVYQAAQQRLNNFSLLVSHVLVPPAMEAILGSPNCQVQGFLAAGHVCTVMGYEQYNPIAKKYGVPIVVTGFEPIDILQGIYLCLQQLESGQAYCENQYIRSVQETGNVVAQQIIQEVFEVVPRRWRGIGEIGESGLGLRQKYALFDAIKRFSTDLSYVSPSAVPSVCISGEIMQGYKKPHDCPAFGTQCTPEQPLGAPMVSSEGACAAYYRYRSYQTVNN
>NC_013161.1|WP_015783369.1|904263_905304_+|GTP-binding-protein
MTQTLSIPKSSHLTLPKRGMPVTIITGFLGSGKTTLLNHILTNNQQLKVAVLVNEFGDIDIDSQLLVSVDENMVALSNGCICCTINDNLVEAVYQILEQADKIDYLILETTGVADPLPIALTFINTELRDMTRLDSILTVVDAETFTPEHFESEAALRQIIYGDIILLNKTDLVDQEKLKILEEELNRIKSGARIIHSQHSQVPLPLILDIDVNNPESYCTEHITDHHHHDHHHEHDHRHHHDHHHHDHDHLTIDGFVSISFESDRPFIVEKFQNFLVDDVMINVFRAKGIIWFKESQLRHIFQLSGKRYDMNADQWITSPRNQLVFIGRNLDKEMLTKQLNQCLA
>NC_013161.1|WP_012594217.1|903549_904194_+|GTP-cyclohydrolase-I-FolE
MTLSQPKELNPTLPKLITQSQPPVTEEEMRQAVRTLLLGLGEDPDREGLRDTPKRVVKALKFLTSGYHQSLDELLNGAVFHENTDEMVLVRDIDLFSSCEHHILPILGRAHIAYIPDGKVIGLSKIARICEMYGRRLQVQERLTAQIADALQGLLQPKGVAVVVEATHMCMVMRGVQKAGSWTVTSAVRGLFAEDAKTRQEFMSLIRHSATFHH
>NC_013161.1|WP_015783368.1|902375_903452_+|WD40-repeat-domain-containing-protein
MFNLKPTLQTLFELQWSRKLADYVTDLSWSNRDYLAASSGIGEVLLWNFNTEEVNLILSPEDTQEKSIDCLQFSADGQFLAAAGQEGKVRIWQILPELQLLNHWGKEGQWIEQLAWHPTQNLLAFSIGRYVQIVDIFAEEIIVTLPFESSSVLAIAWYPSGERLAIAGNGGIKIWKNNSWDEEPIVLEMPAACTAIAWSNQGEYLAASCLDNTVLVWRFPEDNPWRMVGFEGKIRQLAWSTIPSGIAPLLAVACQNTIVVWKKQKTDKEGWLSRTLIHHGAVIKNVVFQPNTLLLSSVGTDGLLLFWKKAEQLTQSLEGVSTEFSRLIWHPLGKKLALGGANGELLILTQSTRGKGFG
>NC_013161.1|WP_012594215.1|901416_902388_+|GTP-binding-protein
MVMVKSLETVPVTVLTGYLGAGKTTLLNRILTHEHGKKVAVIVNEFGEVGIDNQLVIDADEEIFEMNNGCICCTVRGDLIRIISNLMKRRHKFDHLVIETTGLADPAPVIQTFFVDEDMREKLLLDAVVTVIDAKHIQQHWEADEAQEQIAFADIILLNKIDLVSPEELDRLEKRLRGINRMAKIYQTQNTEIAMNYLLGIKAFDLNYALEVDPNFLSEDAHEHDSSISSVSLVELGELDLQKVSNWIGELLRTQGTDIFRMKGILNIQGMAERFVFQGVHMLVDAQPDRPWKPQETRKNELVFIGRNLDEMKLKEEFRACLI
>NC_013161.1|WP_015783367.1|901075_901249_-|metallothionein
MTAATVTQMKCACSSCVCIVNLSDAIQKDGKYYCSDACANGHPDGAGCSHHGCECHS
>NC_013161.1|WP_012594213.1|900689_901079_+|helix-turn-helix-transcriptional-regulator
MKTDTDISEESDELLKCHPHPLETVPLTIFQNQILSVEKAQRMAEFFSLMGDTNRLRILSLLAHQELCVCDLAAILNMSESAVSHQLRTLKAIRLVSYEKRGRKVFYSLQDHHVLELYESVAEHLDEVD
>NC_013161.1|WP_012594223.1|911170_911680_-|transcriptional-repressor
MPPYTATSLKAELNARGWRLTPQREKILHVFQNLPRGNHLSAEELYELLEERGEGISLSTIYRSVKLMSRMGILRELELAEGHKHYELNHPSPNHHHHMVCIQCNKTIEFKNDSILKHSLKQCEKEGFQLIDCQLTVMTICPEAIRMGWPSSLPSNWSCIRAISESESC
>NC_013161.1|WP_015783372.1|911876_912758_-|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MKFLRSFPHILAIVALATTAWTSPSLGNEINSIPDDTQYLQEEPIDIYVPPPETGTPGTCAALIEPAINKIIGRYQNNWGILAETLEGGTTLYSHNPDKFFIPASNTKLFTTAAALQRLNPQGKIGSKSVQNWINVTNINSNNYYADTLLKHIGGASVAKSILAQIGVDPNSFRLADGSGLSRKNAATPRALVTTLRSMHYAPGNNVFYASLPVAGISGTLRNRMKNTTAQGTVYAKTGTLRGVRALSGYMNHPYFGQVIFSILANNPSVSGSALVSSIDQIVLQISRTKPCN
>NC_013161.1|WP_012594225.1|912933_913956_-|long-chain-acyl-[acyl-carrier-protein]-reductase
MFGLIGHLTSLEHAQQVAEALGYPEYANQGLDFWCAAPPQIVDHFHVTSVTGQIIEGKYVESCFLPEMLVNRRIKAAIRKILNAMALAQKADLNITALGGFSSIIFEEFNLKENKQVRNVELEFERFTTGNTHTAYIICRQLEQVSAQLGLDLSQATVAVCGATGDIGSAVCRWLDQKTDVAELLLIARNQERLQGLQAELGRGKIMELEEALPQADIIVWVASMPKGVEINPETLKKPCLIIDGGYPKNLGTQVQHPDVYVLKGGIVEHSLDIDWKIMEIVSMDIPSRQMFACFAEGILLEFEGWHTNFSWGRNQISVPKMEQIGEASLKHGFRPLLSW
>NC_013161.1|WP_012594226.1|914243_915419_-|hypothetical-protein
MQLSSDVFNNSVQYLENHQESLRIRKLIFCLAKKSWENDPNILNSYSLKELILELVQIIPNRDQLKLSLYKLVKSLNRPKVYAPVAKIIFDQIDYIYRDSHQDNDFLEEVDVPVQSTHITNKEFLLEQAVESLNKHEQSERIKKLIFALSREQWENNLDQINSHGLKNLISELLQKYPNRADLEIAFNQLIGKINKRNLYLAISKVILTKLEAFYEDLSVSIDAKNQTIVSSYSTQIIPLNNINYTPNQSGKNNQFQDLAFDTSVIDITSEQMKTEIQQIRNSVSVPPPPAPKTKTYDIFELRLQIVQYTNPLQAKILLFSLLFHPWDRSGQDWSMLRSYTLDDLLEQLLQSGKPLAEIESKLYTAAKSLKDHEPYLQAASTLVETIKPFV
>NC_013161.1|WP_012594227.1|915764_916451_+|hypothetical-protein
MATFNSVIQSNDKTMIQVAVLLTRYGFDLGGLSPLEVIDKWLTSYSAHWIRLAIVEALYQGRYKAVSIEQILRLWQRRSRVTFHFNHEFERLICRHLLLEHSTPTNNQPQSSLKNLQHHIADEQDSVETSLILDHTIKTPESSQVSLPIPRENAPKIFNDRHPSSVSPLTKIDSEPDPSDHKPSVSYQTPLMLTDGKTPSSIHQFVPYADDSHLYTKLRAVLHQRLVE
>NC_013161.1|WP_012594228.1|916480_917563_-|heat-inducible-transcriptional-repressor-HrcA
MTIPTPLTKRYQNILRATIQHYIATAEPVGSKTLVQEYNFSVSSATIRNALGQLEKAGLLYQPHPSAGRIPSDGGYRIYVDNLITPDDRIGQKIEQHLSQKLAKESFSFETLIHRATQILANFSGYIALITLPQTSANQLRHVQLIPASAKQVILIIVTDSYQTESILMDLPQSVLNEDGQNEELLAQELQLISNFLNTHLKGKNLSDLMALNWQKVDQEFVQYTEFLKLLLFQLQEHLKSSISTPIMIHGLSEVLRQPEFSQLQQVQMLLHLLEEQQDQLLPLIFDLPRNQSLTKGVTIRIGSENPLEPMRPCSLISAVYQQRDIPVGSVGVIGPTRMVYENIIPLVESTADYLSEALS
>NC_013161.1|WP_012594229.1|917727_918087_-|hypothetical-protein
MYQYQSLPQITVTELAARLNQLEHLEGKIQLIDVREPHEVDIAYIEGFEVLPLSQFAEWSVHIKSRFNPDVETLVICHHGMRSAQMCQWLLNNGFTNVKNIIGGIDAYSLHVDPAIAHY
>NC_013161.1|WP_015783373.1|918263_919973_+|DUF3352-domain-containing-protein
MKLRSFFITLAISVLILLSLAGGSLYWILAQSPLNLVSGGVLREPITAIFVPKQAPVMISLLVNPDRLEALAKLIAFPQNRRRSHQQFLTLEKQLLAQTGLDYSSQIQPWLGEEITLAVTSLDFDRNPDNGVQPGYLLAITTKDSQLAKEFLQSSYSKDAIAGTSDLIFEPYKGVNLIYQKNRDTDVNQTLSATAILNNVVLFANHPKILRDAINNVQVPDLNLKQSPNYQEALKTITEPRIGLIYANFPSLSAWLGNLPLPELPEITQTLTVAFSVKSEGLVAQTALIGGSKAQDRLPVLSQPVSTLAYIPPNSILTAAGTDLNQLWREIETGLATESPLQQVLNQAITSLQEPLGVNLPKEIFPWVEGEFSLGLLPHPHSGEPDWIFVAQKVPGVNMSEILEKLDELAQEKGYSIGNLPLLDTTVTAWTKLTTAKGNHNSSLTQLAAQVSGLYSETDQYVIFATSVEAMSQALSTSENTIIRSEKLQQAIAGLSAENDGYLYIDWSQGQKLLEQKFPIVKVVELSIKPLLNNLRSLTISSQGSQNSIRRGTVFFNLGGTLIQLSKEK
>NC_013161.1|WP_015783374.1|919987_920428_-|hypothetical-protein
MKFRAIAFFLVSGLLWLSTAWFTPPALALTPIKILEIDYKNCPSELAEGNVTSGGSSLPADCYILIGKAQNSSGKMVYDADVFGRVYDANNEPILQNRSRLGSIPEVPPGISEFELRITVPSDQPTPLKLKQFKASGFTNKVDPIF
>NC_013161.1|WP_012594232.1|920631_920907_+|hypothetical-protein
MIESSMNGLDEIQLPREERVIEIKNLIETLHIADEIASKGYLITSSELADLMNINPSAVTSRGNEWNWRNWLVSKVRREGNQYLWQLERVD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_5

1453381-1453839

TypeV

Consensus_repeat	Method
AAAGAAGATGTCCGCGAATTGAAA	CRT

9 spacers

The CRISPR arrays of NC_013161_5

>merge|NC_013161|5|1453381-1453839|CRT
AAAGAAGATGTCCGTGAATTACAAGCAGATGTTAAGGAATTAAACGGACTTAAAGAAGATGTCCGCGAATTGAAAACAGATGTTGGAGTTTTAAAAGAAGATGTCCGCGAATTGAAAACAGATGTTGGAGTCTTAAAAGAAGATGTCCGCGAATTGAAAACAGATGTTGGAGTCTTAAAAGAAGATGTCCGCGAATTGAAAACAGATGTTGGAGTCTTAAAAGAAGATGTCCGCGAATTGAAAACAGATGTCAAGGAATTAAACGGACTTAAAGAAGATGTCCGCGAATTGAAAGCAGATGTTGGAGTTTTAAAAGAAGATGTCCGCGAATTGAAAACAGATGTCAAGGAATTAAACGGACTTAAAGAAGATGTCCGCGAGTTGAAAGCAGATGTCAAAGAATTAAAATCAGATGTGCAAGAATTAAAAAGTATTAAAGAAGATATCAAAGAATTAAAA

>NC_013161|5|3|1453381-1453839|CRT
AAAGAAGATGTCCGTGAATTACAA	GCAGATGTTAAGGAATTAAACGGACTT
AAAGAAGATGTCCGCGAATTGAAA	ACAGATGTTGGAGTTTTA
AAAGAAGATGTCCGCGAATTGAAA	ACAGATGTTGGAGTCTTA
AAAGAAGATGTCCGCGAATTGAAA	ACAGATGTTGGAGTCTTA
AAAGAAGATGTCCGCGAATTGAAA	ACAGATGTTGGAGTCTTA
AAAGAAGATGTCCGCGAATTGAAA	ACAGATGTCAAGGAATTAAACGGACTT
AAAGAAGATGTCCGCGAATTGAAA	GCAGATGTTGGAGTTTTA
AAAGAAGATGTCCGCGAATTGAAA	ACAGATGTCAAGGAATTAAACGGACTT
AAAGAAGATGTCCGCGAGTTGAAA	GCAGATGTCAAAGAATTAAAATCAGATGTGCAAGAATTAAAAAGTATT
AAAGAAGATATCAAAGAATTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015783640.1\|1446869_1447436_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_013161.1\|WP_015783644.1\|1451093_1451654_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_013161.1\|WP_012594727.1\|1453957_1454593_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NC_013161.1\|WP_015783647.1\|1455051_1456869_+\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NC_013161.1\|WP_012594730.1\|1459939_1461484_+\|alpha,alpha-trehalase	unknown	unknown	gnl\|CDD\|224541
NC_013161.1\|WP_015783651.1\|1465634_1467074_+\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|206646
NC_013161.1\|WP_015783645.1\|1451667_1452417_-\|DUF364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377194
NC_013161.1\|WP_015783637.1\|1445183_1445714_+\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|319977
NC_013161.1\|WP_015783643.1\|1448923_1450990_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224250
NC_013161.1\|WP_015783642.1\|1448316_1448922_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_013161.1\|WP_012594731.1\|1461591_1461966_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015783641.1\|1447467_1448268_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_013161.1\|WP_012594739.1\|1467144_1468539_+\|DUF2252-domain-containing-protein	unknown	unknown	gnl\|CDD\|313268
NC_013161.1\|WP_015783648.1\|1456973_1459802_+\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
NC_013161.1\|WP_012594737.1\|1465221_1465485_-\|DUF3146-family-protein	unknown	unknown	gnl\|CDD\|371480
NC_013161.1\|WP_015783650.1\|1462992_1464681_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|164795
NC_013161.1\|WP_015783639.1\|1446387_1446828_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_013161.1\|WP_015783646.1\|1452432_1453134_+\|D-alanyl-D-alanine-dipeptidase	unknown	unknown	gnl\|CDD\|225084
NC_013161.1\|WP_012594732.1\|1462249_1462705_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225965
NC_013161.1\|WP_015783638.1\|1445775_1446366_+\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|368789

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015783640.1\|1446869_1447436_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	5.31112e-30
NC_013161.1\|WP_015783644.1\|1451093_1451654_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	2.46868e-28
NC_013161.1\|WP_012594727.1\|1453957_1454593_-\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	1.02583e-20
NC_013161.1\|WP_015783647.1\|1455051_1456869_+\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_013161.1\|WP_012594730.1\|1459939_1461484_+\|alpha,alpha-trehalase	gnl\|CDD\|224541	COG1626, TreA, Neutral trehalase [Carbohydrate transport and metabolism].	7.93539e-133
NC_013161.1\|WP_015783651.1\|1465634_1467074_+\|DUF697-domain-containing-protein	gnl\|CDD\|206646	cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.	4.58092e-44
NC_013161.1\|WP_015783645.1\|1451667_1452417_-\|DUF364-domain-containing-protein	gnl\|CDD\|377194	pfam04016, DUF364, Putative heavy-metal chelation. This domain of unknown function has a PLP-dependent transferase-like fold. Its genomic context suggests that it may have a role in anaerobic vitamin B12 biosynthesis. This domain is often found at the C-terminus of proteins containing DUF4213, pfam13938. The structure of UnioProtKB:B8FUJ5, Structure 3l5o, suggests that the protein has an enolase N-terminal-like fold and this Rossmann-like C-terminal domain. Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The protein may be playing a role in heavy-metal chelation.	1.91291e-45
NC_013161.1\|WP_015783637.1\|1445183_1445714_+\|phycobiliprotein-lyase	gnl\|CDD\|319977	cd16339, CpcS, S-type phycobiliprotein (PBP) lyase. This family contains the S-type phycobiliprotein (PBP) lyase (denoted CpcS/CpcU or CpeS/CpeU). PBP lyases are employed by cyanobacteria, red algae, cryptophytes and glaucophytes for light-harvesting. Pigmentation of light-harvesting phycobiliproteins of cyanobacteria and cryptophytes requires covalent attachment of open-chain tetrapyrrole chromophores, the phycobilins, to the apoproteins. PBP lyases mediate this covalent attachment of phycobilin chromophores to apo-PBPs and also ensure the correct binding of the chromophore with regard to the specific attachment site and stereospecificity. The S-type lyase is distantly related to CpcT and similarly adopts a beta-barrel structure with a modified lipocalin fold. Many members of the CpcS/CpcU family ligate phycocyanobilin (PCB) to a specific cysteine residue in the beta-subunits of phycocyanin (CpcB) or phycoerythrocyanin (PecB) and to a related cysteine residue in the alpha and beta subunits of allophycocyanin (AP); they are typically given the designation of "CpcS" or "CpcU". Other members which attach phycoerythrobilin (PEB) to the beta-subunit of phycoerythrin (PE) are given the designation "CpeS" or "CpeU". In Guillardia theta, a Cryptophyte, which has adopted phycoerythrobilin (PEB) biosynthesis from cyanobacteria, phycobiliprotein lyase has been shown to provide structural requirements for the transfer of this chromophore to the specific cysteine residue of the apophycobiliprotein.	1.17463e-81
NC_013161.1\|WP_015783643.1\|1448923_1450990_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|224250	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones].	0
NC_013161.1\|WP_015783642.1\|1448316_1448922_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	4.46961e-45
NC_013161.1\|WP_015783641.1\|1447467_1448268_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.20564e-27
NC_013161.1\|WP_012594739.1\|1467144_1468539_+\|DUF2252-domain-containing-protein	gnl\|CDD\|313268	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252). This domain, found in various hypothetical bacterial proteins, has no known function.	0
NC_013161.1\|WP_015783648.1\|1456973_1459802_+\|malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0
NC_013161.1\|WP_012594737.1\|1465221_1465485_-\|DUF3146-family-protein	gnl\|CDD\|371480	pfam11344, DUF3146, Protein of unknown function (DUF3146). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	1.08937e-53
NC_013161.1\|WP_015783650.1\|1462992_1464681_-\|hypothetical-protein	gnl\|CDD\|164795	PHA00370, III, attachment protein.	4.4013e-06
NC_013161.1\|WP_015783639.1\|1446387_1446828_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.23281e-44
NC_013161.1\|WP_015783646.1\|1452432_1453134_+\|D-alanyl-D-alanine-dipeptidase	gnl\|CDD\|225084	COG2173, DdpX, D-alanyl-D-alanine dipeptidase [Cell envelope biogenesis, outer membrane].	1.1339e-66
NC_013161.1\|WP_012594732.1\|1462249_1462705_+\|hypothetical-protein	gnl\|CDD\|225965	COG3431, COG3431, Predicted membrane protein [Function unknown].	9.79292e-15
NC_013161.1\|WP_015783638.1\|1445775_1446366_+\|chorismate-binding-protein	gnl\|CDD\|368789	pfam06206, CpeT, CpeT/CpcT family (DUF1001). This family consists of proteins of proteins belonging to the CpeT/CpcT family. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the amino terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. It has been shown that CpcT encodes a bilin lyase responsible for attachment of phycocyanobilin to the beta subunit of phycocyanin.	8.55355e-97

>NC_013161.1|WP_015783646.1|1452432_1453134_+|D-alanyl-D-alanine-dipeptidase
MMMKPYHNIPIEDCHEPLVPIPLEKFAVESPHPYQKLGANYNNKSPYYLRQGVLNALLKAQTDLEQEYPGWKIQIFDAYRPVEVQQFMVDYTFDLVIKKQGLNRGQLSSEQEKTLWEKVYQIWAIPSKNPATPPPHSTGAAIDITLVDETGKIINMGGEIDELSPRSHPNYYANSTDKIECLYHQQREILNKIMTKAGFSRHPGEWWHFSLGDQMWALQMNQKTAFYGRIIED
>NC_013161.1|WP_015783645.1|1451667_1452417_-|DUF364-domain-containing-protein
MFSQQIYDLLLDHSNSNTAIQEVLIGLTWTMCNAQGIGLSMSPGIPTRTLPWSGTLVNQTIANIAPWIRSWDSYQATVGMSVINAAINSHSPLPETGQPLSLPGSSNLAVFEHFLPQLRGKRVSIIGRYPGLSRYETEMEINVIELNPEPGDFPSPASEYLLPQSEWVFLTATSIVNKTFPRLVELAKNATLVLMGPTVPWLAELAEFGVNYLAGVTVTNPVALRQTIAEGGGVRIFETGVEYRLVQLP
>NC_013161.1|WP_015783644.1|1451093_1451654_-|Uma2-family-endonuclease
MQLLTRKFTVSDYHKMGEFGILTPQDYVELIEGQIIAMSPISLRHAAMVKRLNILLTYQLYNQAIIGVQDPIELDDFSEPQPDISVLAIRPDFYELEIPKPKDILALIEISDTTIEYDKEIKVPLYAANNIPEVWLFNLNNKSLEVYRNPQNNTYQIQKVLPKNQTVSLLSFPQLIINLGALFNLK
>NC_013161.1|WP_015783643.1|1448923_1450990_-|thioredoxin-domain-containing-protein
MSNRLATAQSLYLRKHADNPIDWWYWCEEALLTAKQSNRPIFLSIGYSSCHWCTVMEGEAFSDQAIAAYLNDNFLPIKLDREERPDLDSLYMQAVQMMGIQGGWPLNIFLTPDDLVPFYGGTYFPIEPRYGRPGFLQVLQSIRRFYDTEKDKLNSFKHEILDTLQKSAILPVTNAELLNNELFYRGITANTEVIIVNPQDFNRPCFPMIPYANLALQGSRFAFQSQENQATVTYQRGEDLALGGIYDHVGGGFHRYTVDSTWTVPHFEKMLYDNGQIVEYLANLWSQGYQEPAFKRAIARTVEWLQREMTAPQGYFYAAQDADNFTTPDEKEPEEGAFYVWKFQELEEYLNSEEFKLLEATFSLTAEGNFEGSNVLQRRMGGEFSEALEAILDKLFMIRYGSSRKTLTTFPPAKNNQEAKNQTWPGRIPPVTDTKMIVAWNSLMISGLARAYGVFGDPLYWELAINATEFILQEQWVNNRLYRLNYEGQPSVLAQAEDYAFFIKALLDLQRANPWERQWLEKAKEVQEEFDEFFWSIEGGGYYNNASDNSGDLLIRERSYIDNATPSANGVALSNLVRLSRLTDDLDYLHRAEQGLQTFSSVLSQSPKACPSLFVALDWYRFGNSVQTTKEILKQFITQYFPVTVYQLTDHLPDNSVGLVCQGLSCLEPATTKNQLFSQIQETTTLNT
>NC_013161.1|WP_015783642.1|1448316_1448922_-|glutathione-S-transferase-family-protein
MYKLYDFLPSGNCYKVRLLLTQLQIPFTRIEINILNQETRTLDFLAKNPNGRVPVLEISSNQYLAESNAILFYLSQNTNYFPSNTFEKAQVMQWLFFEQYSHEPNLATSRYWISILRKAEEYQEALQQKQVLGYAALNVMENHLKKQDFLVGNIYTIADIALYAYTHVAEEGGFDLTQFTAIQAWFKRVKNQPKYLKINDI
>NC_013161.1|WP_015783641.1|1447467_1448268_-|class-I-SAM-dependent-methyltransferase
MDKDTNWKTYTDSNIVKYYSQLSQIQPAEETIIKRFQQQLSTMTMLDIGVGGGRTTKYFSNVVKKYIGIDYSPEMIEACKKQFFHANNTILFKVCDARDLSQFEDNSFDFILFSFNGIDYISHNERLQVFQEIRRVGKSGGYFFFSTHNLQGIEQEFNWKKHLSFNPFMTYVNLVMLAFLRFFNPSISYHQLKSNNYAILKDESHHFRLKTYYIRPYEQIKQLEPYFSHIQVYSWKYGHEITQETELISNSEMWLYYLCFIDKDSD
>NC_013161.1|WP_015783640.1|1446869_1447436_+|Uma2-family-endonuclease
MVQLVIKPYSFEDYLNYNDGTDNKYELVNGELKFMPIPSGFHALILHFILQILEQEIDKLKQQWKVMPGTVGIRTANNKLRIPDLVILSENQCQELREMSSAVLESPPLLAVEIVSLGNADDDYRYKRSEYAVREIPEYWIIDPETKKVSVLLLVSGFYEVTEFRDEQEIKSLLFPELKLIVNQVFEV
>NC_013161.1|WP_015783639.1|1446387_1446828_+|DUF29-domain-containing-protein
MSIIPKLKTLYQIDASLWVEETIKLLKNKQFEQLDLEDLIEELEDLGSEKKYRVESLLEQVIRHFLLLDYWESERNYNKAHWESEIVSFQNQLESYLTTNLSHYLEDNLSRIYNKALRYVRKKTQNTVIFPDQCPYSLSYLLDFDW
>NC_013161.1|WP_015783638.1|1445775_1446366_+|chorismate-binding-protein
MSHSTDLSTLARWMSADFSNQEQAYENPPFFAHIRVCIRPLPLSVFSEPTLFLEQAYDFMLNQPYRLRVFRFNIIDGRIELENYKVQEEASFFGASRDLEKLRKLTPDHLEKMPGCDMFVDWTGNSFKGVVKPGKNCIVVRNERETYLDNSFEIDEHKLISVDRGLDPKTDELVWGSVAGPFHFQRKTSFAHEVEF
>NC_013161.1|WP_015783637.1|1445183_1445714_+|phycobiliprotein-lyase
MTIQEFLELCVGNWFSQRSSYHFEKQQAESHKSELTIEWLDSDHPQVIAWCQHYQIDSTSAIGGKKISWNNSLDWGQPKQIGSTIIVVIPDPNMPQMGQILRGTNNQNPPIVGRYSLGSDHALTLQLEENNHCLEERLWFASDNLRLRTSLIKSPHGFSQTAFYSEIRKLPPKEVA
>NC_013161.1|WP_012594727.1|1453957_1454593_-|M23-family-metallopeptidase
MIRIINRNFKQHKLKNWRYQLVLLSIIGCLTFLGIGGLRESPVQAQYNPTAATGNIWQYASFPVENFQTYTSGFGYRTSPVTGQSQFHYGLDLAAPLGSYVRNWWGGRVVGLSDNTACGTLIRIQSGQWQHTYCHLMGSVEDSPQGRYFIDREGGLVIWQGQDIPSAARIGRVGMTGRTTGPHLHWELKHNGTHIDPGLVLQEMFRYQASS
>NC_013161.1|WP_015783647.1|1455051_1456869_+|malto-oligosyltrehalose-trehalohydrolase
MKLSANYDGNSDCQFTLWAPKVRQVDLKIITPTEQIIPMECDEKGYWKTHLKIAPGSLYCYQLDSEQTRPDPASYSQPKGVHGPSEIIDHHRFNWTDHQWKNLPFTDFVIYELHVGTFTPEGTLTAIIPRLSQLKAVGITAIELMPLSQFPGDRNWGYDGVYPFAVQQSYGGVDGLKELVNACHQEGLAVILDVVYNHLGPEGNYTANFAPYFSHKYQTPWGNALNFDDAYSYGVRNFFIENALYWLRDYHIDGLRLDAIHGIYDQSAKHFLAELREKVDQLSQQCDRPFYLIAESDLNDGRILRPLEVGGYGMDAQWSDDFHHCLHTLLTGENQGYYQDFGRCDHLTQAFKQSFVYSGDYSPHRQRYHGGSVSDRPSSQFVVYAQNHDQIGNRMLGERLSNLVSFNALKLAAGTVILSPFIPLFFMGEEYGEETPFLYFISHTDSNLVEAVRQGRKEEFKSFQWQGEPPDPYALETFKQCQLQWHKRDEGKHKILLKFHQKLLRMRRTIPALKNCNQDHLSVKTWENERLICLHRWFPNSQVFCIMNFNQETITVTIEPPQGNWIKQLDSNDSEWLGKGSTLPESFHLEQTLIIPESSLIVYQI
>NC_013161.1|WP_015783648.1|1456973_1459802_+|malto-oligosyltrehalose-synthase
MKIPSATYRIQFNSQFNFHDAEKIIPYLKKLGISDVYASPILKARSGSTHGYDVVDYHQINPELGSEEDFKTLVSNLQELGMGWVQDIVPNHMAYDSQNKYLMDVLENGPYSDYFDYFDIDWEHPYTDIKGKILTPLLGDFYSTCLENNEIKLRYDEAGFSINYYQLKIPLRIESYSKLIEYDFKRVSDILGEEHNDIVKMLGILYIINNIAQVTDKKKRKEQSNFVKTILGELYRGNSVIQDFIDTNIKIFNNEIEPQNDYNLLDELLSDQFFRLSFWKVGAEELNYRRFFTINELICLKNEKPEVFEDTHKLIIELVNAGLITGLRIDHIDGLYNPTEYLERLREKTGDIYIVVEKIIELEKAYFSRQEEMPITWPIQGTSGYDFLDSVNSIFVFYQEEAPEKITNIYHKFTNKKKPYQEILIDKKRLIADKNLAGDVENLANFLKKIAGKYRYGRDFTLNGLRKAIIEVLVFFPVYRSYITCEEIQDSDREYIQEAIQKAKAQMPQLVNEFNFIQKILLLEDQACLSEEERELWLHFVMKFQQASSPLTAKGVEDTALYVYHRLISLNEVGGNPDLLGISAGVFHYFNQKRQDHWTHSLNATSTHDTKRSADVRSRINVLSEIPEEWESEVMTWQDLNSSHKHRTHQKMIPDGNDEYFLYQTLIGTFPFNQEDYPEFIERIKNYVIKAVREAKVHTAWLKPDLEYEEKFTHFVETILQPSEENLFLEKLRYFHEKIAYYGVFNALSQTLLKITSPGVPDFYQGTELWDFSLVDPDNRRPVDFAKRISLLEELQQQAESDILGLMKQLLTNYQDGRIKLFLTYRTLLARQQHLDLFQKGAYIPLEVIGKYQEHLIAFARYYNQTTAITLVPRFLTRLIDPYHPPLGSEVWGDTQLVIPHTFQANWTDALSDRQIAPANVISIGEILQHFPVALLIGHNSP
>NC_013161.1|WP_012594730.1|1459939_1461484_+|alpha,alpha-trehalase
MLNSLPLYDELRLTSQDLAPIRHYIKHTWKTLTRSPRHIVKAARDPKLEYQGDQPLPVYLSAREDYVQVENKLRQLLSPEELAQIELQVLPPEMNQIEHHGLLYLPGEYVVPGGRFNELYGWDSYFIQLGLLQDGEIALAQSMIDQLLYEIEHYGTVLNGNRTYMLNRSQPPFLTRMILDLYHRTHDLNWLRSVLPTVQSYYFYWTVPPHLNQATGLSHYNAFGVGPAPEVISSEIDENGKNHYERILEYYRTHEIEDYDVSLYYDQETDSLTDLFYQGDRSMRESGFDPTNRFGPFSVDIIHYAPVCLNSLLYQMELDLAEMQRILGYGHAASYWLNHAENRRHLMNQYLWDDEVGLYFDYNFRTGCCRRYEFVTTFFPLWVGLASPEQAQRVALNLSTFETPGGLVTSTHFSGNQWDEPFGWAPLHLIAVDGLRRYGYIEEAHRIACKFVNLVLQEFNKTGTIVEKYDVKKCSADVSDEIFFGYSSNEIGFGWTNGVVLELLAMLERDGVIV
>NC_013161.1|WP_012594731.1|1461591_1461966_+|hypothetical-protein
MLTDFIPFQFAIDKAMIAGVCLWALALYLGLSSVREWIIEGLNRWFNFAERSLYFSAKEFERTRPMRESQNAFYASIFSIIPFLAIGGLCNWGIELGLGQSWSVSGGMLMCIACGIYELGRRST
>NC_013161.1|WP_012594732.1|1462249_1462705_+|hypothetical-protein
MISKLRAMFKDENFLKFIHWVENIVSKVLSIALIIVIFIAVVELIILLFKDLFITEPVGFFGKTLIEIFGLFLNILIALELLENITAYLRKHIVQVELVVVTALIAIARKIIIFDTTKYEKEDLMSLAVASLALSISYFLIRFMNQKYSQK
>NC_013161.1|WP_015783650.1|1462992_1464681_-|hypothetical-protein
MNTRYKLALLYLTRSQIPKNKGMAIVFAMAIGVVMALAAGTMLLGSQAKQSQVSAENAKSEGLSMAQVAVTEFMNTVNQKEKRYILQYPAKCNEEPNNESTHCWERATETTTPPEFQKHLKSCDTDDVTAKAQEVVDLADETKWKDITDPNDSTKLIGQYRIVGYSYEGTVGDAPGLGTLTIEGRKIEGTVGDYRNFGTDSKSLTQATSRLEVQIPIQPNTSDTGVPGLWIKEDGISGNNQIQGNIWANDCSVSVDDLQENHIADPDGEGYQATRTSKDFPSLPYTSFSNVPTSITDIGSLVATNNLSQPNTPIIARLLETFLDKAINNIIGEAAFAKSNGNGNGGGGNGGGSTGGGSTGGNGGGGNGGGNSSLSFPRTTGSNPDTPTRTEGTGANAINIYEYRISGSITTGSDIYVDTFDETNNKRQKVIFHLAGDLDPQGNGRIYHDCSGNVQCKPTDFVIYGYSSNGQICLHGNHQTEAFILAPNYSGGVKGSGGGAGGIKGSVWLNDWGACSSSTSNVVVEQTAEWTDLEPLIVQEIDIPPELRPVSKVLQKQAKDQN
>NC_013161.1|WP_012594737.1|1465221_1465485_-|DUF3146-family-protein
MSSKRLPETIAYVRITQQSWQQGRIEGEVRAAEYEWQFKWHFRRGRLLVKPTLGRSLIYEPLGRFLEHCDYQLEPGGDYQFTLRAEL
>NC_013161.1|WP_015783651.1|1465634_1467074_+|DUF697-domain-containing-protein
MSQIGLNDYWNPDELEETILSFEAIQEEINYKQAQDALQSLVNHLDLTLSEQTGLERELTHLTGMLEKLEQSVVQIAAFGMVGRGKSSVLNALLGQAIFETGPLHGVTQNVDTASWQLNPDETFEGVQRLALSGWGNSRIELIDTPGIDEIDGQTREALAHDMARQVDLILFIIAGDMTKVEYEALSQLREAGKPMILVFNKIDQYPEADRLAIYEKIRDDRVKELLSPDEIVMVAASPLVTEVIRDEGGNLKRQRKREKPQVEALKLKILEILHREGKSLVALNTMLYASEVNEHIVNRKLIIREEAANQLIQKAVMTKAVAIALNPVTVVDLLTGAVVDVAMILSLSRLYGMPMTQQTAIALLQKIGVSMGGISGSEFLASFGLSSLKGLLGLATPITGGVSLLPYFSVAITQGGVAGVSCYAIGQVTKLYLANGASWGPQGPKTVVKSILLSLDKTSILNRIKWELGDKLKQSKSK
>NC_013161.1|WP_012594739.1|1467144_1468539_+|DUF2252-domain-containing-protein
MNESIESYLPAPVSQTGFRSRDERIAIGKSLRDKLPRADHAIWQPPANRRDPIEILEESNQDRIPELIPIRYGRMLSSPFTFLRGSAALMAYDLSLMPNLGIDVQACGDCHLLNFGLFATPERNLVFDINDFDETHPAPWEWDLKRLAVSFVIAGRDNNFDDKDSEEAVEQCVRSYREHLRAYSQMSPLEIWYDRLDMDTIIDMAPNAKSKKLREEIAEKARKRVSDNLFPKITAPVGGRHRFVEQPPLIFRPQLEDFEGRVEEALEDYRESLSLERRVLLDRYRLEDMALKVVGIGSVGTRCYIALFFSEDNHPLILQFKEARRSILEPYTRKSQFDNQGERIVMGQRLMQSSSDIFLGWVRARNNYEFYGRQLRDMKISFPVEGYSALQMKSYAEYCGWTLARTQAKSGDSTTISGYLGKNDQFDKAISKFALAYADQIEKDYHSLVEAVRSGRVEAIEEDF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_6

2228753-2229223

TypeV-U5

V-U5

Consensus_repeat	Method
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	PILER-CR
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	CRISPRCasFinder
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	CRT

6 spacers

c2c5_V-U5

The CRISPR arrays of NC_013161_6

>merge|NC_013161|6|2228753-2229223|PILER-CR,CRISPRCasFinder,CRT
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAGGCGGATCGACAATAATTTACGCGCCAACATCATTGGGTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAGATGTTTGTGGTTCCTGATACAGAAATTCGAGGGGGTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAGTTCCTTTGATCCTTTCGTTCGTCCTAAATATTTTAAGTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAGATTTCTGTAGCTTTAATAAAGCCTAAACCTGGGAAGTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAGAAAAAGATAAAACAAACATCCTTATTAGCTGCCATGTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAGCTATAAATTGATTTAGGTCAATTTTCACGGGAATTAGTTTCAACGACCATTCCCAACAGGGCATGATTATAAA

>NC_013161|6|4|2228753-2229150|PILER-CR
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	GCGGATCGACAATAATTTACGCGCCAACATCATTGG
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	ATGTTTGTGGTTCCTGATACAGAAATTCGAGGGG
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	TTCCTTTGATCCTTTCGTTCGTCCTAAATATTTTAA
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	ATTTCTGTAGCTTTAATAAAGCCTAAACCTGGGAA
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	AAAAAGATAAAACAAACATCCTTATTAGCTGCCAT
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG

>NC_013161|6|4|2228753-2229223|CRISPRCasFinder
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	GCGGATCGACAATAATTTACGCGCCAACATCATTGG
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	ATGTTTGTGGTTCCTGATACAGAAATTCGAGGGG
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	TTCCTTTGATCCTTTCGTTCGTCCTAAATATTTTAA
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	ATTTCTGTAGCTTTAATAAAGCCTAAACCTGGGAA
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	AAAAAGATAAAACAAACATCCTTATTAGCTGCCAT
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	CTATAAATTGATTTAGGTCAATTTTCACGGGAATTA
GTTTCAACGACCATTCCCAACAGGGCATGATTATAAA

>NC_013161|6|4|2228753-2229223|CRT
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	GCGGATCGACAATAATTTACGCGCCAACATCATTGG
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	ATGTTTGTGGTTCCTGATACAGAAATTCGAGGGG
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	TTCCTTTGATCCTTTCGTTCGTCCTAAATATTTTAA
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	ATTTCTGTAGCTTTAATAAAGCCTAAACCTGGGAA
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	AAAAAGATAAAACAAACATCCTTATTAGCTGCCAT
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	CTATAAATTGATTTAGGTCAATTTTCACGGGAATTA
GTTTCAACGACCATTCCCAACAGGGCATGATTATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015784060.1\|2239844_2242382_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_013161.1\|WP_015784043.1\|2215174_2215516_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_013161.1\|WP_071818822.1\|2219430_2219790_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_013161.1\|WP_015784057.1\|2234820_2235609_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_013161.1\|WP_015784048.1\|2221353_2224860_-\|BREX-system-P-loop-protein-BrxC	unknown	unknown	gnl\|CDD\|380283
NC_013161.1\|WP_015784050.1\|2225646_2226123_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NC_013161.1\|WP_015784059.1\|2238178_2239171_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235763
NC_013161.1\|WP_012595455.1\|2234031_2234610_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015784044.1\|2215503_2215923_-\|fatty-acid-oxidation-protein-subunit-alpha	unknown	unknown	gnl\|CDD\|370136
NC_013161.1\|WP_015784045.1\|2216028_2217027_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380294
NC_013161.1\|WP_015784058.1\|2235624_2237823_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|366403
NC_013161.1\|WP_015784053.1\|2229841_2230363_-\|photosystem-I-assembly-protein-Ycf3	unknown	unknown	gnl\|CDD\|179448
NC_013161.1\|WP_015784052.1\|2229524_2229821_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_013161.1\|WP_015784047.1\|2220695_2221316_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227751
NC_013161.1\|WP_015784049.1\|2224873_2225482_-\|DUF1788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378040
NC_013161.1\|WP_015784055.1\|2231082_2231946_-\|sulfotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|366246
NC_013161.1\|WP_015784051.1\|2226228_2228232_+\|hypothetical-protein	c2c5_V-U5	-	unknown
NC_013161.1\|WP_015784054.1\|2230450_2231041_-\|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT	unknown	unknown	gnl\|CDD\|180961
NC_013161.1\|WP_015784042.1\|2212404_2214912_-\|BREX-1-system-phosphatase-PglZ-type-A	unknown	unknown	gnl\|CDD\|274259
NC_013161.1\|WP_015784056.1\|2232064_2233723_+\|alpha-keto-acid-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|226470

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015784060.1\|2239844_2242382_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.65832e-87
NC_013161.1\|WP_015784043.1\|2215174_2215516_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	4.70763e-47
NC_013161.1\|WP_071818822.1\|2219430_2219790_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	3.88286e-57
NC_013161.1\|WP_015784057.1\|2234820_2235609_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.83872e-28
NC_013161.1\|WP_015784048.1\|2221353_2224860_-\|BREX-system-P-loop-protein-BrxC	gnl\|CDD\|380283	NF033441, BREX_BrxC, BREX system P-loop protein BrxC. BrxC is a P-loop-containing protein, and probable ATPase, from BREX (bacteriophage exclusion) systems of type 1.	0
NC_013161.1\|WP_015784050.1\|2225646_2226123_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.21822e-20
NC_013161.1\|WP_015784059.1\|2238178_2239171_+\|hypothetical-protein	gnl\|CDD\|235763	PRK06270, PRK06270, homoserine dehydrogenase; Provisional.	1.94718e-07
NC_013161.1\|WP_015784044.1\|2215503_2215923_-\|fatty-acid-oxidation-protein-subunit-alpha	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	5.76568e-70
NC_013161.1\|WP_015784045.1\|2216028_2217027_-\|hypothetical-protein	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	3.17031e-140
NC_013161.1\|WP_015784058.1\|2235624_2237823_-\|diguanylate-cyclase	gnl\|CDD\|366403	pfam00990, GGDEF, Diguanylate cyclase, GGDEF domain. This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain and has diguanylate cyclase activity. This observation correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. In the WspR protein of Pseudomonas aeruginosa, the GGDEF domain acts as a diguanylate cyclase, Structure 3bre, when the whole molecule appears to form a tetramer consisting of two symmetrically-related dimers representing a biological unit. The active site is the GGD/EF motif, buried in the structure, and the cyclic dimeric guanosine monophosphate (c-di-GMP) bind to the inhibitory-motif RxxD on the surface. The enzyme thus catalyzes the cyclisation of two guanosine triphosphate (GTP) molecules to one c-di-GMP molecule.	9.87126e-59
NC_013161.1\|WP_015784053.1\|2229841_2230363_-\|photosystem-I-assembly-protein-Ycf3	gnl\|CDD\|179448	PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional.	5.72726e-119
NC_013161.1\|WP_015784052.1\|2229524_2229821_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	3.06294e-33
NC_013161.1\|WP_015784047.1\|2220695_2221316_+\|hypothetical-protein	gnl\|CDD\|227751	COG5464, COG5464, Uncharacterized conserved protein [Function unknown].	1.09884e-06
NC_013161.1\|WP_015784049.1\|2224873_2225482_-\|DUF1788-domain-containing-protein	gnl\|CDD\|378040	pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.	1.48761e-45
NC_013161.1\|WP_015784055.1\|2231082_2231946_-\|sulfotransferase-domain-containing-protein	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	1.64707e-63
NC_013161.1\|WP_015784054.1\|2230450_2231041_-\|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT	gnl\|CDD\|180961	PRK07402, PRK07402, precorrin-6Y C5,15-methyltransferase subunit CbiT.	6.28718e-140
NC_013161.1\|WP_015784042.1\|2212404_2214912_-\|BREX-1-system-phosphatase-PglZ-type-A	gnl\|CDD\|274259	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.	0
NC_013161.1\|WP_015784056.1\|2232064_2233723_+\|alpha-keto-acid-decarboxylase-family-protein	gnl\|CDD\|226470	COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only].	0

>NC_013161.1|WP_015784051.1|2226228_2228232_+|hypothetical-protein
MSTITIQCRLVAPEATRQALWQLMAQKNTPLVSELLRQVAQHPDFETWRQQGKLEAGIIKKLCEPLKKDPRFNEQPARFYTSAIALVDYIYKSWLKLQQRLQRKLEGQNRWLAMLKSDDELIQISQTNIEIIQAKATEILSTLQPQDREQSSKKKAKKCKKSTNKNSLFSQLDKLYNEINNNLTHCAIRYLLKNGGKIPQRPEDTEKFAQRRRKVEIKIERIIEQIESSIPQGRDLTGDSWLETLIIAANTATVEAEDVKSWQDKLLSQSKSIPYPVAYETNEDLTWSINEKGRLCVRFNGLGKHTFQIYCDQRQLKWFQRFYEDQQIKKDGKDHHSSALFSLRSGRIVWQEGLGKGKPWNIHRLTLHCSLDTRFWTEEGTQQVQQEKSKKFQTNRLRMKPELTFSIFFRSQTLETYLQVWLVITAYRLQSFLDKGNVAKAHQEFQKAIKRNESSLQKITSSYNRPHKTLYQGKSHIFVGVAMGLEKPATVAVVDGTTGKAIAYRSLKQLLGNNYHLFNRQGKQKQNTSHQRHKSQKHFADNQFGESQLGQYIDCLLAKAIISVAQTYCAGSIVVPKLKDMRELIQSEIQAKAEAKIPGYVEGQAKYAKSYRVQVHQWSHGRLIDNITSQASKFNITVEEGEQPHQGNPQDKAKLLAIAAYHSRLCA
>NC_013161.1|WP_015784050.1|2225646_2226123_-|MerR-family-transcriptional-regulator
MEEMFFTSTEASKLTGCSRRQLQYWREKGVVVPTVNASGKGRNVYYSVSDLLKLMVMEYLLSVGLSFETAQESLEMLKKAHPEMFKADVSSEDLKRLMILPSPKRLELKDFDPEEAFKRINTYAMPLVPFSGEMIHERLKESLQGFSGNNHLKSSENS
>NC_013161.1|WP_015784049.1|2224873_2225482_-|DUF1788-domain-containing-protein
MSSLETISISQRFEHLLSVMSGERFLKKQGIGNEIPFFICPYPPQDSVEMERLQKQLISQLNHRGICVLEINLYDLCLELLRKRGIFEQILDIEFSISKGELKELLQNVLDSESHLIPAIAQKLQENPFDILFLSGVGEIFPYIRSHNVLNNLQTTTSNQPTVLFFPGAYTYSLESGASLDLFGLLRDDKYYRAFNIDEYKV
>NC_013161.1|WP_015784048.1|2221353_2224860_-|BREX-system-P-loop-protein-BrxC
MQLHEIFKKQVDRPIEGVIKADANDEVSLHVELEEYVLTHEVEKRLEEFLSAYNNYTGVNGVWISGFFGSGKSHLLKILALLLEDRRVENSQVIDKFLPKCQNNEILKGDLRRAVTIPSKSILFNIDQKADVTSKTEFDALLSVFVKVFNEARGYYGKQGYIAQFEKELDERGLYVAFKTEYESVAGKPWERGREQVILEKRNIAIAYEKVTGASVEDSMNILDLYRQDYKLSIDDFSQDVKAFIEQQSSNFRLNFFVDEVGQYIADNVKLMTNLQTITESLATKCQGRSWVIVTAQEDMEMVLGEMGNHQTKDFSKIQDRFANRMKLTSRDVAEVIQKRLLMKNEAGVRHLADIFEQQQHNLPTLLRFSDGSKEYSNFQDQDHFIQCYPFIPYQFTLFQSAIRGLSQHNAFEGKHSSVGERSMLAVFQKVAMEIQTQEIGCLATFDLMFQGICSTLKSNIQSGIILAEDNLNNPFAVRLLKALFLVKYVDGFKANLHNLSILMLEEFEQDISDLRNRVQESLNLLEQQTYIQRTGDLYEYLTDKEKDVEQEIKNTEVEVAKVLEALNTLIFDEIIKTAKIRNGEGTQDYPYSRKIDGTLYKREYELGIQVITPFSGQHEQEKALQMENMGRDELLIIIPSDDRLVSDLMMYKRTEKYVQQNISVTQQEAVKSILTQKNQSNQQRYGEIKNRVKSLLGKAKLFVAGTELEISSNDAQNRIILGFQELITRVYPHFKMLAGVNYKAEQVQHFLEQSQDSLFSNDVTVVSEPEKEVLSFAQMNQKRGLRTSMKSLSDNFQRKPYGWSEGAILCMVAKLCARGKLEVQTEGNLLEGEALVEAISNSRNHSNVLLQPQQEFTPSQVRKLKDFYGEFFAQPCGDNEPKAIYQKTKEGFKELSQFIKERLLEREKYPFLSALESVLQTLNDVFNKPYDWYLTDLTDQEDELLDLKEYVIDPIRSFMQGGQKQIYDQAKQLLESQKPNFSYINGDNVSQMRTVLADPQCFKGNQMQQVKGLVESITAEISSQVKTEVEQAQGEIKGLQARMSNMAEFSQLSAAQQQEILQFFQHCYDSIAQEHLIAVIRSTRQQFETDTYPQLLSKMTNLTGVYGVSSGGKSRVKESETQYVPSQGIKVNFGKAWLADEADVEDYLVAMREALMAEIKQGKRIQI
>NC_013161.1|WP_015784047.1|2220695_2221316_+|hypothetical-protein
MVKSADIGSKKLISLSPTPWVQWVMETSEVQATEIITTEFQWVNRDTDVLIRAYTPTDGDFLVLNELQLRYTAKMPQRMTAYAALAREKFDLPVYPVLINILEPSGNIEIATSYQSHFRGLQVQQIMRWDMAVLEQSPWYQEILNRGRKQELIKGIALGLELKFGSQGLELMSEIRSLEDVELLNQILETIRTANNLTELRQLYEK
>NC_013161.1|WP_071818822.1|2219430_2219790_-|four-helix-bundle-protein
MMTVRNYQELIVWQKAMDLVELVYQATKMFPKEELYGLTNQVRRAVVSIPSNIAEGQTRQSTAEFKRFLSIAQGSRAEVETQIMIAQRLKYLSQEEMEQILNLAEEIKRMIYGLTAKLK
>NC_013161.1|WP_015784045.1|2216028_2217027_-|hypothetical-protein
MTLEMQKLEEENNRIFIEAYGLQDELTPEVPLKEITLTCNPYYRYNSDKPQEELETLLLADTIKEFISYSVGCMFGRYSLDKEGLILANQGETLQDYFVKVGSKKWEVRSKEENTPNSSLDSLHSPLPTSHFPLDPLHFIPTETNVIPILEGDWFSDDITEQFRQFLRVTFGEENYQQNLNFVEEAIGKDIEKYFVKDFYNDHVKRYKKRPIYWLFSSPKGTFNALIYLHRYRPDTVSIVLNKYLREFRIKLQARLETLKQIDISASASKTEKTKALRETEQIKKMLRELEDYEQEILYPLAIEQIEIDLDDGVKVNYTKLGKALKNVTGLS
>NC_013161.1|WP_015784044.1|2215503_2215923_-|fatty-acid-oxidation-protein-subunit-alpha
MPARDYYHDIVKKAIEKDGWTITHDPYRIKLARGKNLFVDLGAERLIAAEKGLEKIAIEIKSFRSASEMKDLEEAVGQFVLYEHLLTRYEPERKLYLAVPEDVRQSIFEEEAGQVLIEDKIIRLFTFNVNQAEIVTWIP
>NC_013161.1|WP_015784043.1|2215174_2215516_-|XisI-protein
MDTLTKINLKQAILKVLENYRDFLGSDPESEIQLVIDETRDHYLLIETGWHHNQRIYGTLIHLNIIDNKIWIQQDGTEEGIANELVNLGISPQQIVLAFKTIERRKITDFAIG
>NC_013161.1|WP_015784042.1|2212404_2214912_-|BREX-1-system-phosphatase-PglZ-type-A
MDLNIKQALNKLFERHRIVFWYDTEKELRSDFERLELEGIEKIEINHNEFGLKYRILREQPQQKFLLYYEGKEPEYLDNWLLDIQLAQGKFCTDQVSLWLTELELGLEFGDVVQPHREFFQSRQRREALKQLLHPHDTKTNIRLKMLAVCTAAEPRLDTILERLLEEYAQQQDEKIKLCDRAGLTKFLWQQMEQVYGYRSQELSIKDFVIELFKSCYTAAVEGEGTLTGDALIFLNRWKDSRQFEQSFESLSHQCADILKIEQKLNQRYYQDLIEIDYFRLIDQKIIHDLVQFVSNRTIATHDVTNIVRQRKQGHWYREFEHFYEAINYASQFIQVLDEANLSIESLTDGLEKYCQSWFKIDQLYRKFIYHVSTSANPTLTEKLTEQIENLYANHYLLNLNNYWQVLIDDINDWNRIEFPSQRAFFSKWVEPFLKKDKKVCVIISDALRYEIGDELVSLIRQEDRYEATLKAAVTLLPSYTQLGMAALFPNETLEIVDHPNAIVYVDQQSSQGTENRGKILEKAFQKRQKKATVIQAKDLLELNRDESRSLFRDHAVVYVYHNRIDQIGDKLATEEQVFEAVENTFSDLIKLIKKLTGANASNLLITADHGFIYQHSAIADSDFSMVEVKGDKIIKENRRFVIGEGLKDSDGLRKFKAQEIGLIGELEIQIPKSINRLRIKGSGSRFVHGGASLQEIIIPIVKVNKKRRGDLSTVEVEIIRNSTSSITSGQLAVTFYQQEPVTDKVQPRILKTGIYTQTGELISDLHELTFDSPSENPREREFQVRFILTSQANNINNQEVLLRLEEKLTDTSHFTEYKSVSYTIRRSFTSDFDF
>NC_013161.1|WP_015784052.1|2229524_2229821_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MIDRQQVEKIAHLARLEITPAEEEAFAPQLNSILQYFDQLSELDTENVPPMTRAIELSNITRSDRTETYGDRESLLKSAPEQEGDFFRVPQIMNNDQE
>NC_013161.1|WP_015784053.1|2229841_2230363_-|photosystem-I-assembly-protein-Ycf3
MPRTQRNDNFIDKTFTVMADIILKILPANQKAKEAFVYYRDGMSAQADGEYAEALDNYYEALKLEEDPNDRSYILYNIGIIHASNGDQERALEYYNQSVDLNPRMPSALNNIAVIYHYQGEKAREEGREEEAEALYDKAAEYWKQAIRLAPNNYIEAQNWLKVTGRSEMDVFF
>NC_013161.1|WP_015784054.1|2230450_2231041_-|precorrin-6Y-C5,15-methyltransferase-subunit-CbiT
MLWPYKTPGIPDELFERFPGIPLSKREVRLLLISALRPKVNSVLWDIGAGTGTIPVEMGLLCPESTIIAVERDEDVVKLIRHNCDRFGVKNVTIFEGSAPDCFKQLQPLPDRICIEGGRPIKDIVTEAWRFLKPEGRLVATASTLESLYLISEGLAELQARNMEVVQAGVNRLETRGFHQVFAAVDPSFILSGEKF
>NC_013161.1|WP_015784055.1|2231082_2231946_-|sulfotransferase-domain-containing-protein
MPSQKPSYYLHNGFRMPLGFPPEGFISGLNYQAQPSDIFIATYPKCGTTWTQYIVWLIHHQGEPLLDSQKIGDVSPHLEEVGQEMIMNLPQPRIIKTHLPYHLTPYHPQAKYIYVARNPFDCVVSFYHHTRGFIKHYDFAEGTFDDFFECFIRGEVDFGDYFENLVPWYQHKDNDNVLFLTYEAMKENLDKAIIKIAKFLGSDCYKDIQNPEILHKVMKYSSFESMSQAQQRWSSQRPKNMPPFIRHGKIGDWKNYFSTEQTQRLRDKFRICTAGTDLNQLWRDFLV
>NC_013161.1|WP_015784056.1|2232064_2233723_+|alpha-keto-acid-decarboxylase-family-protein
MMTIGEYLFQRLKELGVDHVFGVPGDYVLGLMDVLIKSPLELICTCNELNAGYAADAYARIRGLGVVCITYGVGGFSLVNAVVGAYAERVPLVVISGAPNSAVRKNHLLLHHTTGDYNLQLSIMEKVTVASVILTQASQAAKQIDEVLSACLHYKRPVYIEIPLDVVNQPCTFSESSLNAIPQLTELTDNDALKEAITEASELLKKAKNPIILAGVEIDRFQLKEPLIKLLETTGYPIATTILGKSCLPEVHPQFIGNYVGALSRDYVRQRVENADCILCLGAIMSDMNLGIYTAQLDTQKLINANSEKVKIKHHFYQPIYLGDFIAGLIPNLSYQESNPLNIQPAIKRLSKTFEFKTEDKLTSGRFYEAINHFLDNDLLVISDTGDSIIASIDLLMHKGSDFIGQAFYLSIGYSIPACLGASFAAPDKRIIVLVGDGAFQMTAQELSTIIRHQLNPIIFLINNDGYTIERVIHDGIYNDLQAWKYHELPHIFGESWSCEVSTEGELQKALLYAKMNTHCVCFIEVHLDRFDCSPGLIRLGKAIEKMQKLSN
>NC_013161.1|WP_012595455.1|2234031_2234610_+|hypothetical-protein
MTKYEHFLGVLLVFYLLVIGIGAALLLIINFPNLNDGNLIFPHLDGDQPQFIPFGTIIHSSDSILLILAFLSGMAGSFLHAAQSLSTYIGNNRFKASWAIWYFLRPWIGGILGFAVYLVLRAGLIGGGSVVNINPYGVISLGILGGWFSKTTTDKLQEVFETLFKTDADENRKDKLNPDEKELKATDNPDNT
>NC_013161.1|WP_015784057.1|2234820_2235609_+|pentapeptide-repeat-containing-protein
MANLEHLMLLQRGKRQWLDWRKNNPQIAPNLQEIDLSGQNFQEAYFVGTNLSQSHLEGIQLESANLEKAQLANSNLIKANLNYANLSQANLIGANLREANLIAANFSQANLIGTCLRNTHLREIDLTQAQLNRTNLSEACGIEANFCEADISQGVLYQAELQGAYFYRANLFQAQLIETHLSHSYFLRANLREVNAQFVDLRWSNLTQTDLRGANFQGANFRGANLTNADLRGANLKQANLRGAILQGTRLEGANLEGIKLT
>NC_013161.1|WP_015784058.1|2235624_2237823_-|diguanylate-cyclase
MADQHHCPLCGSPLLSHVRRGKLGWFCRHCDQEVPYSVDENEPETPASHNGHQVASIAQNCLKSLNKSQLDSHVTSDRSFSPLSTPLTAPFTVRDVLHTSVRGISQFLQADRVIVAQITPSGEISVIEECRKRPWKTMLHLRLGQFLSFQDIQRWQQGKIQTINDVHQEGYRESSMMTLDNLFEVKAKIVVPILQNQASLTLETPQWSNCEHRSNQPLPGQLWGLLIAHQCSNTRQWTNAEIGLLSLLASQIAIAIQQDSFYQHLNAINQKLEQIAFVDRLTQISNRCYFEQYFTQEWRRMAREKQPLSLILCDVDFFKSYNDTYGHLEGDFCLQKIAQAINTSIHRPGDLVARYGGEEFVILLPNTKASGALYIAEQIRSQVKGLRMTSACQEVSPFVTLSLGVASFIPDESLLPAMLISEADHALYEAKKQGRDRVGFKAVDNSTETSVSSPIIPSSFDLESPIDRISNLELLRSYVAYFVSRGIKIASPIAGELSFEGLVYQYHGYHQEFLTFWQQFEHRSDYQQLHLQGDSHSFGEFLQGDCTVNECARCNLPIINPVDRIYDIPSCTLCLEDCVSGKWCELNKPISNNHQCSKLRVLIISPKTKKLTIMKQWLASNDVESIFINEPKDVESLLISQAIDSIVIDANISEPEVKTWANQLREHPQLKEVPIIALSDEAGQGIPWINRKLGIEDYLVTPLNGETLAMYLRYLTKVHCPSNVTNIYWFPR
>NC_013161.1|WP_015784059.1|2238178_2239171_+|hypothetical-protein
MKSNSAIKVGVLGFGGLGQAAARILTPKQEMIWVGAADLKGYAYCETGLDPDQAIATYYQQGSIGYLDPQGTLSNYSIQELIENSAIDGYFLALPNLPNTFMADVAKQFIASGWQGVLVDALKRTSAVEQLLTLQPELEAAGITYLTGCGATPGLLTAAAVVAAQSYTEIHQVKITFGVGIANWEAYRATIREDIAHLPGFDVEKAKAMSDAEVEAFLDQTNGILTLENMEHADDIMLELAGICPRDRVTVGGVVDTRNPKKPLSTNVQVTGRTFEGKISTHTFTLGDETSMAANVCGPAFGYLKAGMALRDRGIYGLFTAAEIMPKFVH
>NC_013161.1|WP_015784060.1|2239844_2242382_+|response-regulator
MNQQKWKIILSLSLAIGYYILAELSRAVASTPTDVTPVWPPDGLGVAAVFCLGYELLPGVFLGSFLANIFAFIHWGDILHLIESIFAVLIIALGTTLGTFLGVFLVKRSIKNRRPFNQVKDVVLFLLYAGLIGPVFNASCGIIALVFCGHIYVDNSRFFWLTWWISNVSGIWVVAPALISWHDGIKGSFSHLINRINPGQLIWIKVKTITNKQKIFEATILWFLICLMGYIAFTISYPVAYMFIPCLVWSNFRFGQVGSTTFILIISAIAVINTVHGQGVFAQDNLTESLILLQCFITVIVLTNLVILATMKEKQEVIARLQKQEAKLRKSSAQLAANQKALAQQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTLVRDYKSRSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQKNIELITDVSSDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHSESEKGSTFLMIFPDVTILELDTIDNYQCELDDNLDQFPPLTILVADDVLSNQAVIQGYFEQTKHNLYFAKDGQEAIELINTIHFDLILLDLFMPNLDGKQVIKYIHNNKKKNHIPIIVMTASTLEEDRISLEKICQGFLYKPIIRYQLTAEIKKIFPSIPSSVSALEIMPQKTVKLPLNPEILNKLSELKLHLEEEEKNQWFQIKKTMIRGEIRQFIQRLKPWGEEYQYPPLLDYITILEQQFHSFDIENITQTIEDFPKIRKAIEDDLLC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_7

2251718-2252131

TypeV

Consensus_repeat	Method
AAGACGNCGGCAAAGANG	CRT

8 spacers

Cas14c_CAS-V-F

The CRISPR arrays of NC_013161_7

>merge|NC_013161|7|2251718-2252131|CRT
AAGACGGCGGCAAAGATGGCGGCAAAGACGGCGGTAAAGACGACGGCAAAGACGGCGGTAAAGACGACGGCAAAGATGATGGTAAAGACGGCGGCAAAGATGATGGCAAAGACGACGGCAAAGATGATGGCAAAGATGATGGCAAAGACGGCGGCAAAGATGATGGTAAAGACGGCGGTAAAGACGACGGCAAAGATGATGGCGGTAAAGACGACGGCAAAGATGATGGCGGTAAAGACGACGGCAAAGATGATGGCGGTAAAGACGACGGCAAAGACGATGGATTCGATGATGACGGCGGTAAAGACGACGGCAAAGACGATGGATTCGATGATGACGGCGGTAAAGACGATGGATTCGATGACGGCGGTAAAGACGATGATGGAGGCAAAGATGATGACGGTGGCAAAGACG

>NC_013161|7|5|2251718-2252131|CRT
AAGACGGCGGCAAAGATG	GCGGCAAAGACGGCGGTAAAGACGACGGCA
AAGACGGCGGTAAAGACG	ACGGCAAAGATGATGGTA
AAGACGGCGGCAAAGATG	ATGGCAAAGACGACGGCAAAGATGATGGCAAAGATGATGGCA
AAGACGGCGGCAAAGATG	ATGGTAAAGACGGCGGTA
AAGACGACGGCAAAGATG	ATGGCGGTAAAGACGACGGCAAAGATGATGGCGGTA
AAGACGACGGCAAAGATG	ATGGCGGTAAAGACGACGGCAAAGACGATGGATTCGATGATGACGGCGGTA
AAGACGACGGCAAAGACG	ATGGATTCGATGATGACGGCGGTAAAGACGATGGATTCG
ATGACGGCGGTAAAGACG	ATGATGGAGGCAAAGATG
ATGACGGTGGCAAAGACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_012595465.1\|2247894_2248362_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_013161.1\|WP_015784063.1\|2249181_2250126_+\|phytanoyl-CoA-dioxygenase	unknown	unknown	gnl\|CDD\|368580
NC_013161.1\|WP_012595473.1\|2256086_2256566_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_013161.1\|WP_012595460.1\|2242375_2242999_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|275102
NC_013161.1\|WP_015784061.1\|2243032_2244193_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NC_013161.1\|WP_012595471.1\|2253605_2255423_+\|HTTM-domain-containing-protein	unknown	unknown	gnl\|CDD\|214802
NC_013161.1\|WP_015784067.1\|2255439_2256021_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012595466.1\|2248368_2249064_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372711
NC_013161.1\|WP_012595463.1\|2244857_2245646_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270255
NC_013161.1\|WP_012595462.1\|2244311_2244740_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NC_013161.1\|WP_012595481.1\|2264283_2265489_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	Cas14c_CAS-V-F	-	gnl\|CDD\|223747
NC_013161.1\|WP_015784070.1\|2262573_2264013_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NC_013161.1\|WP_015784068.1\|2256915_2258199_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_013161.1\|WP_015784060.1\|2239844_2242382_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_013161.1\|WP_015784062.1\|2245794_2247609_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224043
NC_013161.1\|WP_012595478.1\|2260938_2261817_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_013161.1\|WP_012595479.1\|2261847_2262429_+\|DUF3611-family-protein	unknown	unknown	gnl\|CDD\|372001
NC_013161.1\|WP_015784064.1\|2250109_2251138_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_013161.1\|WP_015784069.1\|2258286_2260014_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368333
NC_013161.1\|WP_015784066.1\|2252301_2253588_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_012595465.1\|2247894_2248362_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	5.39953e-90
NC_013161.1\|WP_015784063.1\|2249181_2250126_+\|phytanoyl-CoA-dioxygenase	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	1.8186e-11
NC_013161.1\|WP_012595460.1\|2242375_2242999_+\|glycosyltransferase	gnl\|CDD\|275102	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated. Members of this protein family show strongly correlated phylogenetic distribution, and in most cases co-clustering, with an unusual radical SAM enzyme (TIGR04167) whose C-terminal pfam12345 domain often contains a selenocysteine residue. Other members of the conserved gene neighborhood include another putative glycosyltransferase, an alkylhydroperoxidase family protein (TIGR04169), and a phosphoesterase family protein (TIGR04168). The cassette is likely to be biosynthetic but its exact function is unknown. [Unknown function, Enzymes of unknown specificity].	2.0151e-101
NC_013161.1\|WP_015784061.1\|2243032_2244193_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	1.23916e-138
NC_013161.1\|WP_012595471.1\|2253605_2255423_+\|HTTM-domain-containing-protein	gnl\|CDD\|214802	smart00752, HTTM, Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.	3.90802e-54
NC_013161.1\|WP_012595473.1\|2256086_2256566_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.43112e-18
NC_013161.1\|WP_012595466.1\|2248368_2249064_-\|hypothetical-protein	gnl\|CDD\|372711	pfam13759, 2OG-FeII_Oxy_5, Putative 2OG-Fe(II) oxygenase. This family has structural similarity to the 2OG-Fe(II) oxygenase superfamily.	3.97776e-29
NC_013161.1\|WP_012595463.1\|2244857_2245646_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.21444e-104
NC_013161.1\|WP_012595462.1\|2244311_2244740_-\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	2.59377e-27
NC_013161.1\|WP_012595481.1\|2264283_2265489_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.26453e-41
NC_013161.1\|WP_015784070.1\|2262573_2264013_+\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0.000237349
NC_013161.1\|WP_015784068.1\|2256915_2258199_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	1.11266e-100
NC_013161.1\|WP_015784060.1\|2239844_2242382_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.65832e-87
NC_013161.1\|WP_015784062.1\|2245794_2247609_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	1.87044e-117
NC_013161.1\|WP_012595478.1\|2260938_2261817_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	3.38028e-11
NC_013161.1\|WP_012595479.1\|2261847_2262429_+\|DUF3611-family-protein	gnl\|CDD\|372001	pfam12263, DUF3611, Protein of unknown function (DUF3611). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.	5.99326e-63
NC_013161.1\|WP_015784064.1\|2250109_2251138_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.95106e-23
NC_013161.1\|WP_015784069.1\|2258286_2260014_+\|hypothetical-protein	gnl\|CDD\|368333	pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found associated with pfam00732.	4.12732e-06
NC_013161.1\|WP_015784066.1\|2252301_2253588_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.39164e-45

>NC_013161.1|WP_015784064.1|2250109_2251138_-|M23-family-metallopeptidase
MKNPQHWLMLCLTLGMLIFFGCVNLLRSNSDLSISLPIDCQLGKDCFIFHYVDTNPSSEAIDFNCGRQTYNDHTGTDFGITNLKEMEKGVKVIAVASGTVKHIQDGVIDQLIVDQTDKDEVSDRACGNGILIDHGKGWKTEYCHLKQGSILVSPDTKVKKGTPLGLVGSSGMASFPHVHLTIFYQNKIIDPFTGKKANTGCKVAKKALWTSKIDYQSTGLINAGFAPKPPKPIEIWQGEFLEKQLSANSPALVFWVHLYGILQGDIESFTLINPKGKAVIQQKQTVKKSYRNWVTYVGQKNNLDNPIMSGIWQGKYQLKRNSNIIFEVNQKVEIMSTIKNNN
>NC_013161.1|WP_015784063.1|2249181_2250126_+|phytanoyl-CoA-dioxygenase
MITQNTFDTDGFFVIEKALSEAHCAELLQFIIASFNTTQPDFIIQPDFRIHCPLPVTPLIKTTISTIIKPAYGILDDFLRGSQRLVELSSITVFPHAKGQRIHPDERNEGKYLVSVFVNLAPTTAEAGALRIIPGSHQDLNRNFSQEDPDILELPIGSAVFMNSKTWHGGGSNTTLDRVRPVFYFSFGEPKLKGPTYSILKEVDKQEFVLADFGDLDPQHTINWNWHCKPRLKPNIYVLTPLLETESTLVLLADDRVAALIMILPETAWIKDVITLLVKEPGEYSLGEIQSRFNIEAEYLLKFFTQLAESNCCF
>NC_013161.1|WP_012595466.1|2248368_2249064_-|hypothetical-protein
MPIETWFPLAIYYTDLEDAPTYRDSLKEAVLSLEKAAIEKRSSETAAWTGDVHGVERIYDDPRFAWIVEQVQFNTLAYLKALGIDFLKIDLYIQRAWPVISRKSQNVGGHRHHNSNISAVYYISVPKTGQSGNLIFFNDAKMNEISPGLGTNQTSGYAERNSLNSEKVTYAPKEGRLIIFPSKHRHAVGANQTGELRISLSFDIVMTCAQEGEPGLYEFLAPPPSQWKRFE
>NC_013161.1|WP_012595465.1|2247894_2248362_+|SsrA-binding-protein-SmpB
MGNETKPIKIVSDNRQARFLYEILETYEAGIALVGTEVKSVRAGKVNLGDGYVLIRHGEAILLNVHISPYEASGAYFNHDPRRSRKLLLHRKEINKLIGQIEQKGLTVVPLKMYLKGSLVKVSLGLARGKKLHDKRETIKRRQDEREMSRAMKQY
>NC_013161.1|WP_015784062.1|2245794_2247609_+|molybdate-ABC-transporter-permease-subunit
MDLDISPLFISLRASIIATIIVFFIGMAAARWMLDYKGKGKGIIDSIFIAPLVLPPTVVGFLLLLLLGNNSPIGQLLYQFEYTIIFTWEATVITATVVAFPLMYRTTLGAFEQIDPNIILAARTLGASEWRIFWTVMIPLSYRGLVAATILSFARALGEFGATLMLAGNIPSQTQTMPVAIFFAAESGDMKTALIWVLILLFISMSVIIIVNFWAETTKLKRQGKKIKKHKLFKLENLSDKSSYLIDTSGLILNIEKQLHGFSLETNFQANQETLGLLGASGSGKSMTLRCIAGLETPDRGFISLNEQILFDSAKKINLPSSQRNVGFVFQNYALFSHLNVSQNIAFGIQHLSKTEQEQSIKKYIKLMELQGLEKRYPHQLSGGQQQRVALARALATEPQALLLDEPFSALDTYLRYQLQEQLINTLSTYKGVTLFVTHNLEEVYQVCPNLLIIDQGKTIAYGDKYEIFEYPTTYAVAQLTGCKNFSRAKAISPTSVEALDWGCSLTVIEPIPESLAYIGIRAHHLTFVETPDTENTFPCSLVKTRETPHRMTLYLQVHSMKSTQENFYLLQAELFKEKWDTLKDRPQPWYVRLNPVKLFLMQP
>NC_013161.1|WP_012595463.1|2244857_2245646_+|molybdate-ABC-transporter-substrate-binding-protein
MKKRPLLTFLAGFLLSICLIVLGENFLTQPVVAQSNNLTISAAISVKDALEDLKTIYQKSQPNVKITYNFGSSGSLQQQIEQGAPVDVFLSAAVKQMDALEKKQLIAQGTRKNLLTNRIVLVTPKGQQVIKNFQDLTNSQVKKIGLGEPKSVPAGQYGEEVLKYFKLLDSLKSKIVYAKDVRQVLTYVESGNVQAGLVYTTDAKTSDKIRVAATAPTNSHQPISYPIAVIKNSKNLAAAKAFVQFLSSSQAKTVFQKYGFGT
>NC_013161.1|WP_012595462.1|2244311_2244740_-|TOBE-domain-containing-protein
MPKKQQGWITFQSSITERQILEQYCEVVQRTKTDVLRELLRNLAQMLSFDPTTGHPALLDVKNLPIYQLEHRIMQSSARNVLKGTVKTVTMGAVNAEITIEVAPGVEVVSIITKTSAENMGLAEGKEAYAMIKSSDVMIGVD
>NC_013161.1|WP_015784061.1|2243032_2244193_+|N-acetylglucosamine-6-phosphate-deacetylase
MLKNLTIINAKLPNYREKQQIVINCAGIIEAIEPIKIEFNHQNNQDIFDVNGDYLSLGGIDLQINGGLGLAFPEIQEKDLDLLDKICDFLWQEGIDGFCPTIVTTSVKNIQRSLSTIDQFMSLQKQQSRQTSQILGVHLEGPFLNPQKKGAHPAEYLLTPSVEAIKFILGDYAHRVKIMTLAPELDPSDEVIPYLISQGIVVSLGHSQATDQDAKKAFQLGASMVTHAYNAMPSLHHRQPGLLGEAILNPKVYCGLIADGQHVCLTMIQILLRSSYYEQGVFLVSDALSPIGLGDGIYPWDDRQIEVKQGTARLADGTLSGTTWPLLVGVENLVKWGICTPQAAIAMATESPRKAINLSGISPGQPANLLRWNWDKKNQKLSWERL
>NC_013161.1|WP_012595460.1|2242375_2242999_+|glycosyltransferase
MLGTNCDRLIIFTRYPEPGKTKTRLISSLGAKGAARLQRQLTEHTLKQVNPLINQLSFAIYYNGNTQEMMKNWLGNDLSYYPQPEGDLGQKMQSAFADSFNLGYTKVVIIGIDCPALNSTIVQQAFNSLNNHDLVLGKAADGGYYLIGLKQIIPQLFKNIPWGTNQVLSITQTIAEKLNLTYSLLRTLSDIDRPEDLPILKKYGILE
>NC_013161.1|WP_015784060.1|2239844_2242382_+|response-regulator
MNQQKWKIILSLSLAIGYYILAELSRAVASTPTDVTPVWPPDGLGVAAVFCLGYELLPGVFLGSFLANIFAFIHWGDILHLIESIFAVLIIALGTTLGTFLGVFLVKRSIKNRRPFNQVKDVVLFLLYAGLIGPVFNASCGIIALVFCGHIYVDNSRFFWLTWWISNVSGIWVVAPALISWHDGIKGSFSHLINRINPGQLIWIKVKTITNKQKIFEATILWFLICLMGYIAFTISYPVAYMFIPCLVWSNFRFGQVGSTTFILIISAIAVINTVHGQGVFAQDNLTESLILLQCFITVIVLTNLVILATMKEKQEVIARLQKQEAKLRKSSAQLAANQKALAQQNLVLQEAKQAAEAANRAKSEFLANMSHEIRTPLNAIIGFSDLLQTLVRDYKSRSYLRSIVSSGHTLLALINDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQKNIELITDVSSDIPLLIEFDEIRLRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKITIRIYVQDTGIGIPSDQHDRMFEAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHSESEKGSTFLMIFPDVTILELDTIDNYQCELDDNLDQFPPLTILVADDVLSNQAVIQGYFEQTKHNLYFAKDGQEAIELINTIHFDLILLDLFMPNLDGKQVIKYIHNNKKKNHIPIIVMTASTLEEDRISLEKICQGFLYKPIIRYQLTAEIKKIFPSIPSSVSALEIMPQKTVKLPLNPEILNKLSELKLHLEEEEKNQWFQIKKTMIRGEIRQFIQRLKPWGEEYQYPPLLDYITILEQQFHSFDIENITQTIEDFPKIRKAIEDDLLC
>NC_013161.1|WP_015784066.1|2252301_2253588_+|serine-hydrolase
MKKPFFYSLISLLLFPKLVAAQDSPHLNRVTNQVLLAQNNSSDSQPVHFKTKNQAYLEIDQIVRQLMIKQQIVGLAVGIVHNKETGFLKGYGYADLGAKIPVDVNQTLFRWASLSKPVTAIITAQLVKAGIVNWDFPIQTWFKTYQMPKFYLLDCATNAQTSTLNDYRFPCDRGYTEVPLPPSSKITLRTLLGHTAGIIGYDNPRGSAEPNTSYLDSQRNQSILRWGLENLLTKPLLAIPSREYHYTTFGYNLAGVVLEEASGQPYPQLLQTYINNPANLNTLQPDYQWETIPNRVIGYRREKGQIIQDRLTDVSWKMAGGGLMSTPKDLTTFCGALMDNTLLDERAKRTLWTEQITSKGKTTEYGLGFGIGRWKNHVYIGHSGSQENTKTRLEFYPKDNLCIVIMSNTNTTKTNSFVKAIAQTILDP
>NC_013161.1|WP_012595471.1|2253605_2255423_+|HTTM-domain-containing-protein
MNKKFNFHYFYKNNLRLFKRFNFIKPQELLGLDLRSLALFRIALGLLIILDLINRAQDLKAHYTESGVFRLAALTNEFSDRWFWSLHFINSSVIFQGILFLIAGLFALALLIGYRTRLVTIISWLFLISLQNRNSMILSAADAELLLLLFWGIFLPLGAYYSVDHALNSSTKILPIKIFSGATIALILQICFIYWFAAFLKMGSEPWEQGFAVYNSLSADYIITPLGAFLRNFPNLLMVFTFVTVWLELLAPFLLFIPLKNSFFRYLAAFLFISLHLSFAMVFRLGLFPLIGVTAWLALLPSELWDYLSNKFKNPQSQQVIIYYDHQDKSSQKLLCLLRTFFVLSEIPLIPIPNNSATLQLLHSDNSWMVVNQEKNQYYGSKAIIYLARFSPFSKILVPLLKWYPLQWIGRKFFKDNRFIHTFVTPKLKFCPIKVESSWLLNCISLFLIFVVLLWNIRSLNPSKIELPKPIKEIVYALNLTQKWDMFSKPTNSTEWYVIPGQLKDGTKIDVFRDGKPIKWQKPDLKSAAFKNMRWRKYLTRLDGDKYEKHRLYYGKYLCRRWNSQHQGNQQLETFKIYYLSQKTNANGQSSKIKRNLLWEHTCFK
>NC_013161.1|WP_015784067.1|2255439_2256021_-|hypothetical-protein
MKTIIAIVIICATSIITPLIPVPTAIGEIPVSLRKKSNPVKIKPFGARYTIYGNLQTSLSQSSKSLTVDGTSYETSEDTQFISKMTKFTRGTCVKLEYHDNTEEVLELTAVSKNNCLDPKETFTLWDAKIDKMPNDLIGTWIINGETFKTTKKTRFYNEPFEPFSCVDVQYRPQDNLITKIKKESPSKCYWLR
>NC_013161.1|WP_012595473.1|2256086_2256566_-|GNAT-family-N-acetyltransferase
MFSYYKDYLIRDWKESDRLDAAKVIETVLKEYGLPWQPEEADQDVLAIEQFYLAVEGEFWVVEHQSEIVGTAAYYPILKGNNAVEIRKMYLLPQVRGKGLGKYLLKALETTIKDRGYQEIFIETASLLKEAVKLYEDYGYQPITEVETKRCDRAYIKGL
>NC_013161.1|WP_015784068.1|2256915_2258199_-|TldD/PmbA-family-protein
MTIDPQQLIELALKSGADTAEVYQSSSRSHPVFFEANRLKQLESQESQGTALRLWREGCPGLVVGYGGIDPQELVNKAIALSQLNCSEIIELSKPRKAIYQNIGQSLSVETLIEIGKNAIDKLRDVYPDTICSGEFACEEETTLLINSQGLHCQYQETSLNYYLGLEWVRGEDFLGIYDGEHTRNELDPDQVIKQILQRLEWAQQNVSPPTGKIPVLFTPEAASMFWETVADAINGKRVLENSSPWSDKLGEIIVSNHLTLFQDPQQDPYSCPFDDEGTTTQFLSLITQGNLTQFYSDRTTARELGNNSTGNGFRPSLGRYPTPNLVNLMIEPGDASLETLISQLDKALVVDQLLGGGADISGEFSVNIDLGYRIENGQITGRVKDTMVAGNVYTALKQVIALGNDCRWHGSCYTPSLVIEGLSVIG
>NC_013161.1|WP_015784069.1|2258286_2260014_+|hypothetical-protein
METSTELIAYDLIIVGSGNGACGFLSHYLPHKAIIAPDEKILVIEEGDDFFSTSDITHQNNWTQSYGEENVFKLHNALTPSGLPIISGRACTMGGGGSINYTMIHESSEWLSQQMGHSVDYWDGLKTELNQKFARPNPGDKLSPVSQHILEIATKLGFKINTHTTENIPNYQEGNKQLLHLFPTQFNYFGQRTHSGVFLVPWSDPRLTLKTRHRVEVLKWEKSSDGIVHCVGVETINLDSGKKVFFALAPTGKLLLCAGGATPRLLISHQALLSNYAIGKQVSDHIVLPLGIYLLDPKITITGRDVYVPIFATTLWQPETSKAGHEIVCCFDFFSGNFEKLWYLLSHLYLAFLLPNWVKRIVIRVPLIFYFIKNSIRILIEFINFLIDLLWGISRVLEGKSWSHENYNLVTAIVRFNPANEGYYDPQKNKILLDFFTDNSSSNFNQDLTLSEQVITEQMELLNNLGNQPHWLVKGIIRWFTKIPYNQQQVSNYIQVYRKKFLLSQQHLSGGCLFGQVLDQGLNNPLETGKVFGSNNVYVADLSSVALPRISPQMTAYLIGFHVAKNLCKDSISDH
>NC_013161.1|WP_012595478.1|2260938_2261817_+|universal-stress-protein
MFKNCLICTNLTDGLDRLVKFVPYLAGSGVKRIVFLHNISVWESEKATKVDEDRINRAQERLAPALQEIPEGIEVKVEVLSGQPKDTILRLINTYNINVVFTGMSIRSAVETKIFGSNTLELAPLTPVPLMVFRPQLILTYTQEELALRCQHLWRSLLIPYNGEKSAQYLIEQIKHYAQNRPKDSFQQCVLLWVIDDGGRTETLKEYHLHEAQEKLNAVKTELEALNLTVETKIAQGNPLHEILDTAVAFDISAIAIAHDYSSNILQWTISSLAKEVVSHSWFPVLFFSLKQ
>NC_013161.1|WP_012595479.1|2261847_2262429_+|DUF3611-family-protein
MNDNIDKPEIARPLPEAVLEASSTLKWWGWRSFWAQIVLGIISLLALGTGSFRPSTPDEPAANPATGFAIFFALCGLVALGISVYFSLRYTKIAELLRSPDPARRPKRSDTLNVISWGLRVNLIGMLLSLVGTQSSVGNVLIKSVSQTGAVRGGAGCLVVAADVFSIQANTTAVTAHFLGIGISLWLLNRITK
>NC_013161.1|WP_015784070.1|2262573_2264013_+|hypothetical-protein
MLIMRSLSIPSFSLTVLLLLIGWGLIGCSDRLEASQPFREMTPQPVVTSKLAEVAPPSSIQELRQALDQYEPQVNIISPQKAQVFSETSVAVKLEVKDYPLFKDPDLAMGPHLHLILDNNPYQAVYSVDEPIILENLTPGTHTLRVFASRPWHESFKNDGAYDQTNFHILTKTEDNAPEPSLPLLTYSRPNGQYGAEPIMLDFYLTNAPLHQVAQASNDDSVADWRIRATINGESFLLDTWQPIYLTGFQEGNNWVQLEFIDEQGDRVNNVFNNTVRVITYEPNGQDTLSKLVRGELSSQMARAMVDPNYTAELTPTPTVETEVTSEETSDTAESEPIINEEVPTTETQSELTVEESLTPEAEETQELNTEMVPEETVVIPDSLPLPEAETVEPESLSEKVDQGSEEMVSQETEPSAAQEMVPPIIEENSAISESESLPETTSSSNEKPAQNLFNSFKKLINFDQIFQTLESLKTTIGF
>NC_013161.1|WP_012595481.1|2264283_2265489_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MFILEYKLKGKQHQYQAIDEAIHTVQFVRNKCLRYWEDNKGVGQKDIYKYTTELRSEYSFVKELNSTACQQACERTWTAILAFYNNCKINIPGKKGYPKYSKRTHSVEFKKSGWKLNRDAKKITFTDGKNIGELKLIGSRDLFYFQEWQIQRVRIVKRADGYFVQLLLKLDIRDITPSLEPTRKCVGLDMGLKYLYADSDNNMVEPPRYYRQAEKRLNKLNRRKSKKFKRGKKQSNNYIKARRQYAKGHLKVSRQREEFAKRLALRLIQSNDLIAYEDLKVKNLVHNKKLAKSINDAGWSKLRKWIEYFGVKYGRLTIAVNPAYTSQECFNCGQLIKKSLSVRTHICSCGYCEDRDTMAALNILKKATIGHIGSWSEDLNAWGDSTSILVGSNTCQDKLSQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_8

2288506-2289058

TypeV-U5

V-U5

Consensus_repeat	Method
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	PILER-CR
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CRISPRCasFinder
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CRT

7 spacers

c2c5_V-U5

The CRISPR arrays of NC_013161_8

>merge|NC_013161|8|2288506-2289058|PILER-CR,CRISPRCasFinder,CRT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAACAGTCATTTTCATTGAGTCACGCAATTACGCCCGCCAAACTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAACGTTTTCTAATAGTAACCCCGATTTTTTCATGGCATCTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAACTTTTAAAGGCAAATTTAAAGGGTCTGAGAGTATACTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAACTTTCTTCTATTTCAATATTTTGGGGAGGAAGGTTATTAATCTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAACCCAATATATTAATTTTAGGACAATCTTGAACAGGAGAATCTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAACCGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGACTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAACGCCGAACGATCTGCTTTGAGGTCACGGGGTTTCAATCTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC

>NC_013161|8|5|2288506-2289058|PILER-CR
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	AGTCATTTTCATTGAGTCACGCAATTACGCCCGCCAAA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	GTTTTCTAATAGTAACCCCGATTTTTTCATGGCAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	TTTTAAAGGCAAATTTAAAGGGTCTGAGAGTATA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	TTTCTTCTATTTCAATATTTTGGGGAGGAAGGTTATTAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CCAATATATTAATTTTAGGACAATCTTGAACAGGAGAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	GCCGAACGATCTGCTTTGAGGTCACGGGGTTTCAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC

>NC_013161|8|5|2288506-2289058|CRISPRCasFinder
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	AGTCATTTTCATTGAGTCACGCAATTACGCCCGCCAAA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	GTTTTCTAATAGTAACCCCGATTTTTTCATGGCAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	TTTTAAAGGCAAATTTAAAGGGTCTGAGAGTATA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	TTTCTTCTATTTCAATATTTTGGGGAGGAAGGTTATTAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CCAATATATTAATTTTAGGACAATCTTGAACAGGAGAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	GCCGAACGATCTGCTTTGAGGTCACGGGGTTTCAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC

>NC_013161|8|6|2288506-2289058|CRT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	AGTCATTTTCATTGAGTCACGCAATTACGCCCGCCAAA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	GTTTTCTAATAGTAACCCCGATTTTTTCATGGCAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	TTTTAAAGGCAAATTTAAAGGGTCTGAGAGTATA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	TTTCTTCTATTTCAATATTTTGGGGAGGAAGGTTATTAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CCAATATATTAATTTTAGGACAATCTTGAACAGGAGAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	CGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC	GCCGAACGATCTGCTTTGAGGTCACGGGGTTTCAAT
CTTTCAACCTACCCCTTATCGGGATGGCGGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015784085.1\|2291949_2293518_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NC_013161.1\|WP_012595502.1\|2285414_2285606_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012595509.1\|2294279_2294519_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_013161.1\|WP_015784079.1\|2282259_2282727_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015784078.1\|2280917_2282204_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236002
NC_013161.1\|WP_015784086.1\|2294064_2294283_+\|2-oxoisovalerate-dehydrogenase-E1-subunit-beta	unknown	unknown	unknown
NC_013161.1\|WP_012595495.1\|2276483_2277470_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NC_013161.1\|WP_012595513.1\|2296428_2296854_+\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	unknown	unknown	gnl\|CDD\|224485
NC_013161.1\|WP_015784084.1\|2291503_2291935_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NC_013161.1\|WP_012595507.1\|2293620_2293989_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NC_013161.1\|WP_015784087.1\|2294585_2295887_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341142
NC_013161.1\|WP_015784088.1\|2295893_2296154_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015784077.1\|2278336_2280754_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226800
NC_013161.1\|WP_015784082.1\|2285871_2288055_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_013161.1\|WP_015784089.1\|2296190_2296442_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_012595496.1\|2277560_2278211_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_013161.1\|WP_015784081.1\|2283615_2284758_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|131103
NC_013161.1\|WP_012595501.1\|2284952_2285411_+\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|349967
NC_013161.1\|WP_015784083.1\|2289596_2291435_-\|hypothetical-protein	c2c5_V-U5	-	unknown
NC_013161.1\|WP_015784080.1\|2282911_2283499_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015784085.1\|2291949_2293518_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	7.79831e-101
NC_013161.1\|WP_012595513.1\|2296428_2296854_+\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	gnl\|CDD\|224485	COG1569, COG1569, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	8.04021e-32
NC_013161.1\|WP_012595509.1\|2294279_2294519_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	7.24441e-12
NC_013161.1\|WP_015784078.1\|2280917_2282204_-\|dihydroorotase	gnl\|CDD\|236002	PRK07369, PRK07369, dihydroorotase; Provisional.	0
NC_013161.1\|WP_012595495.1\|2276483_2277470_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.0060412
NC_013161.1\|WP_015784084.1\|2291503_2291935_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.27658e-18
NC_013161.1\|WP_012595507.1\|2293620_2293989_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	9.1138e-42
NC_013161.1\|WP_015784087.1\|2294585_2295887_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341142	cd17253, RMtype1_S_Eco933I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli O157:H7 EDL933 S subunit (S.Eco933I), Escherichia coli O104:H4 2009EL-2071 S subunit (S.Eco2071ORF3585P) TRD2-CR2, and Streptomyces species SirexAA-E S subunit (S.SspAAEORF2129P) TRD1-CR1 and TRD2-CR2. Escherichia coli O157:H7 EDL933 S subunit (S.Eco933I) recognizes 5'... CACNNNNNNNCTGG ... 3' and Escherichia coli O104:H4 2009EL-2071 S subunit (S.Eco2071ORF3585P) recognizes 5'... RTCANNNNNNNNGTGG ... 3'. The recognition sequence of Streptomyces species SirexAA-E S subunit (S.SspAAEORF2129P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.Eco2071ORF3585P TRD1 recognizes RTCA/TGAY and S.Eco2071ORF3585P TRD2 recognizes CCAC/GTGG. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.04021e-76
NC_013161.1\|WP_015784077.1\|2278336_2280754_-\|hypothetical-protein	gnl\|CDD\|226800	COG4354, COG4354, Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism].	0
NC_013161.1\|WP_015784082.1\|2285871_2288055_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.70406e-51
NC_013161.1\|WP_012595496.1\|2277560_2278211_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.55215e-14
NC_013161.1\|WP_015784081.1\|2283615_2284758_+\|glutamate--cysteine-ligase	gnl\|CDD\|131103	TIGR02048, gshA_cyano, glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NC_013161.1\|WP_012595501.1\|2284952_2285411_+\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	5.52904e-83
NC_013161.1\|WP_015784080.1\|2282911_2283499_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.21533e-36

>NC_013161.1|WP_015784082.1|2285871_2288055_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MSSCLADTANASVIPLTEDSPSNIAPNDSTCRVRRSAAMIGLAISMSATGLLLTQNKAAVAANSLAENVNLSSLPAPSYPQLAKADTVESEDGKLAPVSLKHKVKAGESIEELGRIYQVDSKAIASINNLPLQAPLVPGQTLKIPSVSKLDSGSQAPQVKIETSKSQELASKPLNTSLDHLRETRKRLQESLVELKTEKSKAEVTPLVADVSDVSQPLNAQETPSSVNQEGQGISIPVIQPENNAVSRQISPSSSTLTSTEGETPTIKPASKVPSLAKLPSVPQAKIEESELPQFNEPIAIPVLPAENNSEVPSVSSPRRLSTLPQPREVAPQTTPPTHQARIVPQPSFNEPVSNRFYRVRPGDTLNSIARSHGLTLSELIRANGITNPNLIKVHQNLIIPQKGLSARSQLQPRNLANLPQSGNLVASSPDGLSPSALPVPLSPLPSRATTETNEFQKRYSGQKQSEPIEIEVTSAFDSHTDKLKADIANLEQEYADNSDSDAIEIQTELENERTKPIVGQTLNNEWARDRQGRAFSDRQKQPGDRRIAQRLPNSRLVGVAPSDTEQYNDAFRIPVGTNVGPELPPLSGPDNYLPGAPTQFTGYIWPTKGVLTSGYGRRWGRMHKGIDIAAPIGTPIIAAAPGEVITSGWNSGGYGKLVKVRHPDGSVTLYAHNSRLLVRRGQQVEQGQQIAEMGSTGYSTGPHLHFEVHPNGRGAVNPIAMLPRKN
>NC_013161.1|WP_012595502.1|2285414_2285606_-|hypothetical-protein
MRVRRRSGVAESFRDRLSLWINRAFPQGIIDMTEPRKWLITAQKCTILVALIEPNNDRNSLLV
>NC_013161.1|WP_012595501.1|2284952_2285411_+|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MLKIVLVHPQIPPNTGNIARTCAATETELHLVGPLGFELSDRYLKRAGLDYWPYVNLHYHKDLAEFYSVYQQHTGRLIGFSVRGQSPYHQWTFQENDWLLFGSETEGLPKSVLENCDATLYIPMSQSKVRSLNLSVSVTIGLFEARRQLSIF
>NC_013161.1|WP_015784081.1|2283615_2284758_+|glutamate--cysteine-ligase
MRLSKGLEIEIYTGTADGQIIGLSDRIVKDLEGFVREPDARNVEYTTAPLCCYDRLLCAILRPRHDLRQYLTNIGNYTLIPGSTLSLGNSDRFYRSDPHNPYHSYIEQTYGTNVVTASIHINIGISDPEILMQACRLVRLEAPLYLALSASSPFLDGQVTGYHSTRWHLFPQTPDHVPLFTSHAHFIQWTEEQLALKTMQNVRHLWTSVRPNGDNRPYNVNRLELRICDLVVEPIALLSIVALLEARLSQLMNDLSLDPLIQSELSPEELLKITAQNERAVAKDSLKAQLNHWQDGREIWVQDWIEELYQDVWPTAKQGGFSCFLSPLKKLLREGNLAQQWLRKYESGQDIPSILVDEIEAMTQRESDLADKLCDARLVA
>NC_013161.1|WP_015784080.1|2282911_2283499_+|Uma2-family-endonuclease
MLITEEKIYSIAEYLAFEGTSENKHEYINGHIYPMAGGTTNHNQIAGNIYAELNFTFKRLNYRVYMGDVRLWVPQVKTFTYPDVMIIVGDPEYFDNRTDTVTNPSIIIEVLSKSTQQYDRESKFNAYRSIPSFQEYLLFDQTRIYAEHFFKTGAKSWVFQEYDLTDESIKFNLVDCQMALVDIYNKVEFSQSSNE
>NC_013161.1|WP_015784079.1|2282259_2282727_-|hypothetical-protein
MRQTLLLISLSYFCLSSPAFSQSNQPILEGTINQEETLPPASNPQLNSHIRLIMGMWRGFHEIEETTLYYGYQFRPNGTFSARHRLYEGEKTLEDNLLQGQWTFDGQIVQITGNSSNNPEQSLKIQFRLAEDLQLYYQTGSLPDTYSLMRLGKVQ
>NC_013161.1|WP_015784078.1|2280917_2282204_-|dihydroorotase
MNTSTVFRQVRVLDPFANTDMIADVWLNDGKIQAIDPHLNVISPETTIIEAQGLILGTGLVDLYSYSGEPGFEDRETLTSLAAAAIAGGFTRVAILPQTKPAVDNAATFSFLQQKAQMLPNSPHLHFWGHLTLGGQGKQMTELAELATAGVVGFTDSQSIENLGLLRRILEYLKPLGKPVALVPESSSLKGNGVMREGLLSIHYGLPGNPAIAESSAIAAILEIVAEINTPVHLMGISTRRGVELLASAKARGLPITASTSWMHLLLDTHDISNYDPSLRLEPPLGNPEDRQALIEGVREGIIDAIAVNHRSLTYEEKTVAFAEAPTGAIGLELALPLLWDQLVVQGEWSPLQLWKALSCYPCQCLGLEVAGLQVGQPAELILFDPQKTWQVDGTTLQCLGRNTPWYQQEIKGRVITSFVGKENNTLT
>NC_013161.1|WP_015784077.1|2278336_2280754_-|hypothetical-protein
MKTLFSLPNIPPCAWKRPIGQGWDKPYTVRYASNLDDGPNHGMPLGGFGSGCIGRSPSGDFNLWHLDGGEHVFRSIPSCQFSVFEQPEGEDAQVYALSTQPPEEGTLSRWSWYPPEKGTYHALYPRSWYQYEGVFKSQLICEQFSPIIPNNYQETSYPIGIFEWTAHNPTDKPITLSIMVTWQNIVGWFTNAIKSPEITVRDDGSPEYQYQPRWGDSTGNFNQWVQDNFRVGFILNRIQLHDQIQEGEGQICIASVTNPSVEVFYLGKWNPKGDGSEVWDYFAMNGSLPDTEDETPAEPGEQIAVAMAIRFTIRPGRTKKIPFILAWDFPVTEFAPGVQYYRRYTDFYGRNGKNGWAMVRTALKHSDVWYERVEEWQSPILKREDLPDWFKMALFNELYLLTDGGTLWTAASENDPVGQFGVLECLDYRWYESLDVRLYGSFGLMMLWPRLEKSVLEAFARAIPTHDDTPRIIGYNQAKAIRKAKGATPHDLGAPNEHPWQKTNYTSYQDCNLWKDLGSDFVLQVYRDYLLTGSDDTDFLWECWPAITETLDYLKTFDLDNDGIPENSGAPDQTFDDWKLQGISAYCGGLWIAALEAAIKIAEILLKNVPTTEELQSRNNPESIKHYVKNHRDWLEQSRSIYHDTLWNGEYYKLDSQSGSDVVMADQLCGQFYARLLNLPDVVETQYTESALNKVYEACFLKFQDGKYGAANGMKPDGTPEDPNSTHPQEVWTGINFGLAAFLLQMGRKDAAFKLTEAVVKQVYENGLQFRTPEAITAVGTFRASHYLRAMAIWGIYGILTHFRP
>NC_013161.1|WP_012595496.1|2277560_2278211_-|Uma2-family-endonuclease
MFITVNQNTLTLTPGSEIILQYQTWDDYENLLEIRQEKPLPKIYFHAKTNTIRLMSPLPSHGNRVDILRDLVKSLLGKQGKDWHCFDPITLKHFKQAGVEPDTCFYIDHRDAILGKEKLDLSVDPPPDLAIEVDFTSLTDIEAYQTLKIPELWIYRQSILKIYRLVGENYQESSTSGIFANVNVKEILPKYVELAWNQGSSVALRQFEQEYLNKIN
>NC_013161.1|WP_012595495.1|2276483_2277470_-|hypothetical-protein
MSSPKLPPTTFRVRNFLAGLKPLGSLVFLAPVVTVALLAVGLWQYRLHPEWLGNITSPVGTIEGEVGNNLDIGINPQNVEGNTPITNPQSSLPPQENNLDIPLPSPLGLADPQIPVAPQNLPELPPASNAANPPSSPNKQQLPQIFQPLLPHVKNPNSLSPSLSGSGNTSQPVNIPNLKPIEIAPIQTNPLYNAMQQNALPSGITPPSNPLGNTSVNPSPSSINQPTPTGFNQVPTQPQYSQVPRQSMVPSYQAYPGNPNGYSTPYNQSVGGGYPNGYGVPTTPVQPVQPINPYGYGTPQGYNQPTAPQNNYGMQRPQISGSDSVYSR
>NC_013161.1|WP_015784083.1|2289596_2291435_-|hypothetical-protein
MSQITIQCRLVAKEPTRQTLWQLMAELNTPFINELLQKVAQNPDFEQWRQKGKLQKSVIKQLGDKLKKDPRYLGQPARFYTSGISLVEYIFKSWLKLQQRLQRKLDGKRRWLTVLKSDEELIQQSQQNLEAIRHKASEILQTHQKTEKLFNHLFQLYQEEKNPFTHIALCYLLKNRCKLPQKPEDPEKFTKRRRKVEIAIDRLQEQLEGRLPQGRDLTNHNWLETLSIACQTDPEDTAQARSWQDKLLIQSQSIPFPINYETNEDLTWHKNEKGRLCVKFNGISDLSFEIYCDQRQLKWFQRFYEDQQAKKGSKNQHSSALFTLRSGRILWQEGNEKGQPWNIHRLILQCTLDTRLWTQEGTEEVKQEKAEEIAKVLTSMNEKGDLTKNQQAFIKRKQSTLDKLENPFPRPSQPLYRGQSNILVGVSMGVDKPATVAVVDGITQKTLTIEYIKQLLGNNYPLIQRQRQQKQHQSHQRNVAQRKEAFNQFGDSELGEYIDRLLTKAIVTLAKKYKAGSIVVPKLEDMREIVQTEIQTKAEERIPNCIEAQKNYAKCYRVQVHQWSYSRLIDNIEAQASKLGIVLEISQQPYKGTPHDKAIALALNAYQSRLSA
>NC_013161.1|WP_015784084.1|2291503_2291935_+|MerR-family-transcriptional-regulator
MGETFFTSKDAAKITGCTLRQLQYWREKGVIVPMVSATGTGRSVYYSRSELVELAVMVYLLSVGLTFESASGVLQQLREVEPNFAKENSQRRLMLVFDTSEGILKLKDFERESAIAFLDRGEAIIPLWLEQIHQPLNQTLPIN
>NC_013161.1|WP_015784085.1|2291949_2293518_+|SAM-dependent-DNA-methyltransferase
MAKQNGKTVQNNSNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAVKVKTREKAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKGIIDRVDFNATIHGERELDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAESGKSAGEFYTPKEVGIIMAKIMQPQPGMAIYDPCCGSAGLLIKCQLVLAESQEKGGKYAPLQLYGQEYTGDTWAMANMNMIIHDMEGKIEIGDSFRFPKFKQGGNLAQFDRVVANPMWNQNWFTEQDYDGDEWGRFPQGAGFPGSKADWGWVQHIWASLQPHGQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLFYNTSAPGIILILNKAKSEARKHQLLLINASLEFAKGDPKNYISDEGINRIVTAFLNWEEQDKFSRIVSKEEIAKNDYNISPSRYIHVAEAEEFRPISEILQELEELESQAEETNRILMQVLSKFR
>NC_013161.1|WP_012595507.1|2293620_2293989_+|endonuclease-domain-containing-protein
MKDTPRIRGTTPEIEAAARRLRCNLTPAEAYLWEALRGKKLKGLKFRCQHPVGRFILDFYCPSCKLAIEIDGSSHDTKQEYDQVRTEKLAQYGYRVLRFTNEEVMTDLSRVLAEIEKVAFTP
>NC_013161.1|WP_015784086.1|2294064_2294283_+|2-oxoisovalerate-dehydrogenase-E1-subunit-beta
MSQSTEIVFLVEDAPEGGYTARALGESIFTEADDLESLREMVKDAVHCHYDNVESRPKIIRLHIVRDEVFAS
>NC_013161.1|WP_012595509.1|2294279_2294519_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MKLPRDLSSDDFIKKLSRLGYEVTRQTGSHIRLTTQENGEHNITIPAHNPVKIGTLNAILRDIAQHFSLSRDELLKRLF
>NC_013161.1|WP_015784087.1|2294585_2295887_+|restriction-endonuclease-subunit-S
MEQSTKSINSVWSFVRVDEIFEIQQGKQVSQKNRVGDNQKPFLRTKNILWNRLDLTDLDTMHFKPTDERRLKLKSGDLLLCEGGSVGRTAIWQEDIEECYYQNHLHRLRVINNKCSYQFALYWFWYAFEYSSFYSGRKNITTIPNLSRSRLAELPIPLPPIEEQRKIASVLTLIQETIQEQENAIALTTELKKALMQKLFTEGINNEPQKMTEIGLIPESWEVLPLRKMFKIKHGYAFKGEYFTSEGKFILMTPGHFNEDGGFRDQQDKTKYYIGEVPNDYLLKKDDLLVAMTEQKSGLLGSSAFVPESNKYLHNQRLGLIEELDESYLDKKFLFHLFNYEYVRKEISQTATGSKVKHTSPDKILNVMVGLPNLNEQKDIIFLLDEFDIKINIIVLKKQQLQDLFSTLLHQLMTAQIRVDELDLSALEKQIKE
>NC_013161.1|WP_015784088.1|2295893_2296154_+|hypothetical-protein
MNPSTYTPETLIKSIKQLPQESLPELAQFVEYLHYKNQQQNLTHESSITLEQTEQLTEKLLTEMGDNLPSLSDYAVSRTGIYEEHP
>NC_013161.1|WP_015784089.1|2296190_2296442_+|hypothetical-protein
MINQEEITIKVSPELAQAYRQASQETQEQIGLKVNAVLSLELENRRKEAVKKLSILMDKASEEAQANGLTPEILEEILANKET
>NC_013161.1|WP_012595513.1|2296428_2296854_+|putative-toxin-antitoxin-system-toxin-component,-PIN-family
MKKLKFVLDTNIIISAFLFQNSKPRQALELAKNHHLILLSTNIIQEMRTVIQRPKFDRYISLSLREELLDTLIESSLMIDPDEIVTECRDPKDNKYLELAITGQAKCIITGDEDLLILNPFREIPIMTVQEFLTTYEEVTE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_9

3192357-3192843

TypeV-U5

V-U5

Consensus_repeat	Method
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CRISPRCasFinder
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CRT
GTTTCAACGACCATTCCCAACAGGGATGGGTTGAAAG	PILER-CR

6 spacers

c2c5_V-U5

The CRISPR arrays of NC_013161_9

>merge|NC_013161|9|3192357-3192843|CRISPRCasFinder,CRT,PILER-CR
TATTTCACCCACCCCTGTTGGGAATGGTCGTTGAAACGACTAGGCAATTGAGGGACTTGGCTAAAATCCTAGCTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAACTTTAGAAAATGTTAGTAATGGCGATCGCCCTTTAGATGTCTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAACTTTTATAATGAATTAAAGGAATGCCTTGCTTTTTAGAACTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAACCTTTCGCTTCTCAAAAGCATCTTTTTCCCGTTTTTCTTGAATTCTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAACAACTCGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGACTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAACCTTGATCGTTCCTCGCTCCTGGTGTAAAAGTTTGCTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC

>NC_013161|9|6|3192357-3192843|CRISPRCasFinder
TATTTCACCCACCCCTGTTGGGAATGGTCGTTGAAAC	GACTAGGCAATTGAGGGACTTGGCTAAAATCCTAG
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	TTTAGAAAATGTTAGTAATGGCGATCGCCCTTTAGATGT
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	TTTTATAATGAATTAAAGGAATGCCTTGCTTTTTAGAA
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CTTTCGCTTCTCAAAAGCATCTTTTTCCCGTTTTTCTTGAATT
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	AACTCGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CTTGATCGTTCCTCGCTCCTGGTGTAAAAGTTTG
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC

>NC_013161|9|7|3192357-3192843|CRT
TATTTCACCCACCCCTGTTGGGAATGGTCGTTGAAAC	GACTAGGCAATTGAGGGACTTGGCTAAAATCCTAG
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	TTTAGAAAATGTTAGTAATGGCGATCGCCCTTTAGATGT
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	TTTTATAATGAATTAAAGGAATGCCTTGCTTTTTAGAA
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CTTTCGCTTCTCAAAAGCATCTTTTTCCCGTTTTTCTTGAATT
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	AACTCGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CTTGATCGTTCCTCGCTCCTGGTGTAAAAGTTTG
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC

>NC_013161|9|6|3192429-3192843|PILER-CR
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	TTTAGAAAATGTTAGTAATGGCGATCGCCCTTTAGATGT
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	TTTTATAATGAATTAAAGGAATGCCTTGCTTTTTAGAA
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CTTTCGCTTCTCAAAAGCATCTTTTTCCCGTTTTTCTTGAATT
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	AACTCGCTTAACTTCTCCCTTTCCCTCCCCAAAAAGAGA
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC	CTTGATCGTTCCTCGCTCCTGGTGTAAAAGTTTG
CTTTCAACCCATCCCTGTTGGGAATGGTCGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015784533.1\|3193363_3195376_-\|hypothetical-protein	c2c5_V-U5	-	unknown
NC_013161.1\|WP_012596254.1\|3181105_3182200_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NC_013161.1\|WP_015784532.1\|3190865_3191930_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|215237
NC_013161.1\|WP_015784528.1\|3179815_3180745_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234835
NC_013161.1\|WP_012596255.1\|3180764_3181097_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212139
NC_013161.1\|WP_015784530.1\|3183806_3186797_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NC_013161.1\|WP_015784538.1\|3202046_3203723_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378147
NC_013161.1\|WP_015784040.1\|3201212_3202043_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NC_013161.1\|WP_012596249.1\|3188963_3189557_-\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|227011
NC_013161.1\|WP_015784537.1\|3196833_3200682_-\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227922
NC_013161.1\|WP_015784529.1\|3182430_3183663_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|237106
NC_013161.1\|WP_015784539.1\|3204088_3204307_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015784541.1\|3204736_3206011_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341176
NC_013161.1\|WP_012596251.1\|3187048_3187348_-\|DUF5132-domain-containing-protein	unknown	unknown	gnl\|CDD\|319213
NC_013161.1\|WP_015784534.1\|3195482_3195941_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NC_013161.1\|WP_015784536.1\|3196396_3196756_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015784540.1\|3204297_3204672_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350305
NC_013161.1\|WP_015784531.1\|3189632_3190772_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270400
NC_013161.1\|WP_015784535.1\|3195957_3196383_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NC_013161.1\|WP_012596250.1\|3187517_3188852_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|227010

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_012596254.1\|3181105_3182200_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	4.10426e-19
NC_013161.1\|WP_015784532.1\|3190865_3191930_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|215237	PLN02433, PLN02433, uroporphyrinogen decarboxylase.	0
NC_013161.1\|WP_015784528.1\|3179815_3180745_+\|ornithine-carbamoyltransferase	gnl\|CDD\|234835	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.	0
NC_013161.1\|WP_012596255.1\|3180764_3181097_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|212139	cd11532, NTP-PPase_COG4997, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from archaea and bacteria. The family includes some uncharacterized hypothetical proteins from archaea and bacteria. Although their biological roles remain unclear, the family members show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, the family contains a single MazG-like domain.	2.22645e-36
NC_013161.1\|WP_015784530.1\|3183806_3186797_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_013161.1\|WP_015784538.1\|3202046_3203723_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	2.25618e-16
NC_013161.1\|WP_015784040.1\|3201212_3202043_-\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	1.28005e-60
NC_013161.1\|WP_012596249.1\|3188963_3189557_-\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|227011	COG4665, FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.30189e-51
NC_013161.1\|WP_015784537.1\|3196833_3200682_-\|NACHT-domain-containing-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	1.80035e-12
NC_013161.1\|WP_015784529.1\|3182430_3183663_-\|methionine-adenosyltransferase	gnl\|CDD\|237106	PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.	0
NC_013161.1\|WP_015784541.1\|3204736_3206011_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341176	cd17287, RMtype1_S_EcoN10ORF171P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli N10-0505 S subunit (S.EcoN10ORF171P) TRD2-CR2, and Herpetosiphon aurantiacus S subunit (S.HauORF5277P) TRD2-CR2. The recognition sequences of Escherichia coli N10-0505 S subunit (S.EcoN10ORF171P) and Herpetosiphon aurantiacus S subunit (S.HauORF5277P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	5.24992e-88
NC_013161.1\|WP_012596251.1\|3187048_3187348_-\|DUF5132-domain-containing-protein	gnl\|CDD\|319213	pfam17195, DUF5132, Protein of unknown function (DUF5132). Proteins in this family are uncharacterized, but have been identified as members of a gene cluster for the synthesis of Ansamitocin.	6.30224e-08
NC_013161.1\|WP_015784534.1\|3195482_3195941_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	7.50318e-20
NC_013161.1\|WP_015784540.1\|3204297_3204672_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350305	cd18738, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.86731e-36
NC_013161.1\|WP_015784531.1\|3189632_3190772_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270400	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold. This subgroup includes TRAP transporters that bind to ketoacids such as pyruvate and alpha-ketobutyrate, xylulose, and other unknown ligands. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NC_013161.1\|WP_015784535.1\|3195957_3196383_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.15874e-21
NC_013161.1\|WP_012596250.1\|3187517_3188852_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|227010	COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism].	3.58333e-167

>NC_013161.1|WP_015784532.1|3190865_3191930_-|uroporphyrinogen-decarboxylase
MTQGNNTPYLLRAARGEILDRPPVWMMRQAGRYMKVYRDLRDKYPSFRDRSENADLAIEISLQPWKAFRPDGVIMFSDILTPLPGIGISFEIPESKGPMIDSPIRTQEQVDNLHSLDPEASLPFIKTILKALRDEVKNEATVLGFVGSPWTLAAYAIEGKSSKDYANIKRMAFCEPAILHQFLSKLADAIAVYVRYQIDCGAQVVQLFDSWAGQLSPQDYKVFALPYQQQVVRQVKATHPDTPLILYISGSAGVLELMGQSGVDIVSVDWTVDMADARQRLGRNMMVQGNIDPGILFGSKQVIRDRILDTVQKAGKGGHILNLGHGVLVGTPEENVGYFFETAKQVDQLLAVPV
>NC_013161.1|WP_015784531.1|3189632_3190772_+|TRAP-transporter-substrate-binding-protein
MKRRNLVKATSQGAIAATVAGIAIGCSKSQNQATSNNTELPKITWQMATSWPLSLDTIFGGATVFAERVAQMSGGRFKISPKPAGDLAPPLEVLNVVKQGAVPCGHTAAYYYIGQNPAAAFGTAVPFGLTAQQQNTWLYEGEGLKLLQELYASQFGVIQFPAGSTGTQMGGWFRKEVSTINDLKGLKMRIPGLGGQVMSKLGVLVQNLPGGEIFQALQTGAIDAAEWVGPYDDEKLGLNKVAQYYYYPGWWEPGPTLEVQINLNAWKKLPVEYQQMIQTAAFEANQIMLARYEARNYEALQRLLQSGTQLRPYSDEILNAAKTSAFELYDEFAAKNVDFKAIFENWQKFRDGVFTWSNLNQGSFERFVYKTLDTPSQGS
>NC_013161.1|WP_012596249.1|3188963_3189557_-|TRAP-transporter-small-permease-subunit
MPTLFKFAQTIDYLTEQVGRLLYSIVILTVGIGFYNVAARYLGRFVGLKLSSNALIELQWYLFSLMFFIGFPYILKHSANVRVDFLYAHWSPKRQALIDFLGTVLFLIPFCLIGIYVTFNPVLQSWGQLPDGSWGAWEVSSDADGLPRAPIKSMILVSFALLLLQAISQAIKYGAILQGYEPALREIQSETEKPPIE
>NC_013161.1|WP_012596250.1|3187517_3188852_-|TRAP-transporter-large-permease-subunit
MGFEWLAIAMFVGFFFILISGYPVAPAFAGTAIIFGLMGLAVGAFDINLLLLLPNVWFQTMSNFTLLAIPFFVFLGVVLEKSGLAEELLETIGIVLGPLRGGMALAVIIVGTLLAATTGVVAATVIMMGLLSLPVMLRYGYDKRLAAGVIVASGTLAQLIPPSLVLVVLSDQLGVSVGDLFLGALIPGLMLSASYAIYVLVLAFLYPNVAPALPLEARRVQGKALIKQVIKAVLPPCLLILAVLGSIFFGIATPTEAGAVGAVGACFLAASKGRWTQNLIKDAAHDTAVVTSVVLMILFCSSFFSIVFNGLGGKELITQFLLNIPGGYISFMIVSNLVIFILGVFLEFIEICFIALPLLVPAAQALGIDMVWFGVVIAINLQTAFISPPVGFSLFYLQSVAPKEIPTTDIHKSALPFMLLQGLILIVVIIFPQTVRWLIDISYN
>NC_013161.1|WP_012596251.1|3187048_3187348_-|DUF5132-domain-containing-protein
MALKDFVPHLDLKDIAEDLGIPGITAIVLLPVLIPAAGKAAKPLAKATIKGGIILYEKGKGVIANVGETLEDLIAESLAELAEETSEKAAIAEADVMAN
>NC_013161.1|WP_015784530.1|3183806_3186797_-|cation-transporting-P-type-ATPase
MKRPNSIDCHQPRETSFVKILHGTVKGRGRYKVQGLFGSNPLKRYLEFNLSLRKGIKTVQANPNTGNILLHFHKDKTTQEIAILIDSLVQDYYRSPKEFAQLFYQQTMVILNTSVPWHLKEIDTIVAELNTSTERGLSHADAQTNLRQYGTNALTEAEPRSGLSIFLDYFKSVPVALLSGAALLSVLTGGIADAIVIMGVVSINAILGYVTESNSERIINSLKHFINPSAWVLREGQLIEINSQDLAVGDILLLQPGSYVPADARLIQADRLSIDESALTGESLPIRKHQEILASPQETIPLAERKNMVYRGTFVTGGQGRGVIVSTGNSTEMGQIQALVGETSQPSTPMERQLEQAGNQLVLLSSVVCALVFAIGLLRGYGLLEMVKSSISLAVAAVPEGLPTVATTTLALGILNMRKQKVLIRRLEAIEALGSIQALCLDKTGTLTANRMTVLKVCWDGRETKLADGHFWVDNQEINPYSCDELLKLIHIAVLCNDSQINTHQDGTYIIDGSATENALIEMAIAAGVTVADLNHKYPRLLTYHRSTEHNFMATVHRIHESAYLMAVKGNPSEVLDRCSTQMRNGQPVELTEADRQAIEEQNESLAGQALRVLGIAYSQGETADIESLPVSNLIWVGLIGMADPIRPGVTETIADFHTAGINTLMITGDQSPTAYAIGKELNLSQGQPLKILDSTELTDLSPDVLAGLSEQVHIFARISPAHKLQIVQALQQRGLVVAMTGDGINDTPALKAAEVGIAMGHTGTDVAREVADVVLEDDNLQTMIIAVSQGRTIYNNIRKSVHFLLSTNLSEIIVMLFATTGGLGQPLNAMQLLWLNLVTDIFPGLALALEAPEPDVLTLPPRSPDEPIIKSSDFRRIVWESTALSVSSLAAYGYGIARYGISPHASTIAFMSLVSGQLLHALSCRSSRPLRSQQLPPNPYLTGALAGSMGLQWVSLATPGLRNLLHLTPLNLADSLVIGGSAILPLIINEGTKPQ
>NC_013161.1|WP_015784529.1|3182430_3183663_-|methionine-adenosyltransferase
MKKDFMFISESVTQGHPDKLCDQISDAIVDHFLRHDPYSRVVTECAVSTAIVFIAARFQSDAMIDFPKIARQVIKQVGYEESSFSAKTCSIVTSLQEVASMNDRYVDERQLSDEEIEAIPVKNQATVFGFACRQTPALMPLPIWLAHQLAKRLTQVRQDNILSYLTPDGKTQVGVEYRDRLPYRLQSITVIASQDSSSIAKSPNFQQFQQDIRETVIDAVFADDSLLIKPDQETQIFINPDGPLLVGGPAVHSGLTGRKNAIDTYGEYSRHSGAALSGKDPTRIDRIGAYAARYAAKNLVAAGLADECEVQLSYSIGIARPISIQVQTFGTGKVPDETLTEILEKHFEFRLAGIIKQFNLRFLPSLIKGGFYRKLAAYGHVGRTDLGVIPWEETNQISLLHDCANKAYIF
>NC_013161.1|WP_012596254.1|3181105_3182200_+|acyl-CoA-dehydrogenase
MQTKIAPQNNTEESLLSSAQTYFIQQVAPQAALLDQDTEALKQSFKKMGDHGLLGLNIPQQWGGKGASELTYRRFQILIARYSGALAFLQTQHQGAIAKLIVSPNTPLKQTYLPLMATGEMLVGVGFSQLRRQGKPLMQATPVTGGYLLTGEVPWITGWNIFEEFIIGATLPTSEALYGIIPFREEPGLHFSQPMELAVMGVTNTVKATLTDWFLPCDRLVSLHPPGTVQESDRKNVLHHGFFALGCAQAGLDILEQACQQKSLPFLQPALDSLHNELMQCTQGMLASLSPDRVLYEKRLQLRGWAINLASRCSQGAVIASSGGANFLSHPAQRVYREALVFTVLGQTSEVMEETLKQLVSEEF
>NC_013161.1|WP_012596255.1|3180764_3181097_+|nucleoside-triphosphate-pyrophosphohydrolase
MRQYHHKLVRDKIPDIIAKSENFCEIRTLSEQEYLEALKHKLLEEAQEVIEADPENLVKELGDLFEVIDNILIAYQISRETVINYQQQRRKERGGFTQRIQLIWTETQAQ
>NC_013161.1|WP_015784528.1|3179815_3180745_+|ornithine-carbamoyltransferase
MSMNTLKGRDILGIADLSASELTEILKLGALLKSGERSPVCQKVLGLLFSKASTRTRVSFSVAMYQLGGQVIDLNPSVTQVGRGEPLIDTARVLDRYLDILAIRTYQQEDLETFAKYAKIPIINALTDWEHPCQILADLMTIKECFGTLSGITVTYLGDGNNVAHSLILGGALMGMNVHIATPKDYQPNQAILDKAKEIGVEGFQVLVTDNPIEAVEGSQVLYTDVWASMGQESSAEARIPLFEPYQVNQKLLNHADQEAIVLHCLPAHRGEEITDEVIEGKQSRVWDQAENRMHAQKALMVSLLGVDS
>NC_013161.1|WP_015784533.1|3193363_3195376_-|hypothetical-protein
MSTITIQCRLVAPEATRQALWQLMAQKNTPLVSELLRQVAQHPDFETWRQQGKLEAGIIKKLCEPLKKDPRFYEQPARFYTSAISLVDYIYKSWLKVQRRLQNKLEGQNRWLVMLKSDEELVQISQSSLETIQAKATDILSTLKPEKPDKFPETSTTKGKKSKKYKNNNSLFTQLYNLYEKADDTLTHCAIRYLLKNGCKIPQKPEDPEKFAQRRRKVEIKIERIIEQIESSIPQGRDLTGDSWLETLIIAANTATVEASEIKSWQDKLLSQSKSIPYPVAYETNEDLTWSINEKGRLCVRFNGLGKHTFQIYCDQRQLKWFQRFYEDQQIKKDGKDHHSSALFSLRSGRIVWQEGLGKGKPWNIHRLTLHCSLDTRFWTEEGTQQVQQEKSKKFQTNRLRMKPELTFSIFFRSQTLETYLQVWLVITAYRLQSFLDKGNVAKAHQEFQKAIKRNESSLQKITSSYNRPHKTLYQGKSHIFVGVAMGLEKPATVAVVDGTTGKAIAYRSLKQLLGNNYHLFNRQGKQKQNTSHQRHKSQKHFADNQFGESQLGQYIDCLLAKAIISVAQTYCAGSIVVPKLKDMRELIQSEIQAKAEAKIPGYVEGQAKYAKSYRVQVHQWSHGRLIDNITSQASKFNITVEEGEQPHQGNPQDKAKLLAIAAYHSRLCA
>NC_013161.1|WP_015784534.1|3195482_3195941_+|MerR-family-transcriptional-regulator
MEEMFFTSTEASKLTGCSRRQLQYWREKGVVVPTVNASGKGRNVYYSVSDLLQLMVMEYLLSVGLSFETAQESLEMLKKDHPEIFKADVPSEDLKRLMILMSPNNLELAIYDAEEAFLRVNRLGLPLVPFWSDRIHGRLRDNLKQFKEKLEK
>NC_013161.1|WP_015784535.1|3195957_3196383_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MPQYILDTDHISLILRNHPQVIANASRHFISVTIITVQELFNGWMGKINDPSAIHNLPQLYSKLSITVKYLQTIEILDFTTQADHILKQLLKENPPLRKNRLQKDMRIAAIALSLNATVVTRNQKDFSLVPGLSIVDWTMI
>NC_013161.1|WP_015784536.1|3196396_3196756_-|hypothetical-protein
MVINLNIPPSQPSANLKVKILIETLKNGQYAVSIAEFPHFRVQASTKEEAISQLQTTFIEQISQIETISWTTPLDNPSPNWREFAGIFQNDADFQEIIDKLQAERTSDDESEVDPSYYL
>NC_013161.1|WP_015784537.1|3196833_3200682_-|NACHT-domain-containing-protein
MDYPFENLDPEKFQQFCQALLTKEFSNVQCFPVAQPDGGRDSISYVDVNFSDKFIVYQVKFVRKPQAESEPHKWLIGILKDEAPKIKQQIPKGAEQFVLMTNIAGTAHPEVGSIDKTQEILDRYMDVPSMCWWRDDLNRRLDNAWDLKWIYPELMTGTDFIRAIFETRLSEDQQRRSNTIKALIQDQFATDQLVKFKQIELQNRLLDLFIDVPVSLSNSDFLEDKKKKKSHSSRSTFYQIRKDVAHSNSQLINESSDKQIGAATLLLHPLIQNNIPCIVLEGAPGQGKSTITQYICQVHRMRLLNQEDLSKTIPKEYRQTETVQKLPQNHKNSAVKLPFRIDLRDFAKWLSKKNPFNIDNDEVPENWEKSLESFLAALIKHRSGGCEFSVTDLLAIAKISPVLLVFDGLDEVADISRRREVVDEISRGIRRLKVNTESLQVIVTSRPSAFANSPGLQDDDFTYFQLESLTNPLIFDYTDKWLKARKLSPNESKEVKQILKEKLEQPHLRDLTRNPMQLAILLSLIYTRGSSLPDKRTSLYDNYVDLYFNRESEKSSVVRENRDLLINISRYLAWVLHSEAEKEGSSGSITADRLHILLNNYLRNNGHEESLEEKLFTGMIERVSALVSRVQGIYEFEVQPLREYFAARHLYETAAYSPTGKETNGTLPDRFDAIAKNFYWLNVTRFYAGCYSKGELPSLIDRLEDLINSDGYNLISHPRILAATLLSDWVFSQHPKSVQAVIKLILDGIGLRYILPSNSRRVGNNAPMILPQDCGKSELIKHCFAILSDSLPKDYALDVIDLIKANASSQEIYDFWFGAIVSHKGKSRTQWFEYGYHLGILHNISDNDLNTIFNDNEDRDERLCILFKARKLEYFSSDEQRFNCIVHAVLDKKITILERSRTQSILDKLSSLLNPQLYIFVFHESRHTPLSEFWSRGFYENYNYRRLVIDNLRENSVEDRLNFSEFDKIKEFVDVVQEQSQIYTVDWATQIKPWDNIVEKGRELWGEKWSLFVLANISAAIKSATEKYQEFDNLLDHNQSLCKRTRNARLKSGAFHWWTQQFDQLDKINNDNELELMFILLVFITWASSKSISKILNKIDSLISQLSETSWFNLFNALQEDILIVDQSNNRLINLETTSLPPTLNPRTVIILSLRTQYKLREKLYNKYLKDYDGYDLKVLQFCQQIALELLSKDSSQWNTVHTIIQKTYSKSAISEKYAFHKFLRSSKISLLPDNIAEEIAKNPDCYPSFLVAAAEIKCTNIVAQKIVPVGKIAEEENWFKD
>NC_013161.1|WP_015784040.1|3201212_3202043_-|AAA-family-ATPase
MTQAQEIAQKLGDLNPDEQWLQMEIARLNRQSIVPLEHIRDLHEWLDGKRKARQSCRLVGESRTGKTVACEAYTLRNKPIQQGRQTPIVPVVYIMPPTKCGSKDLFKEIIEYLRYKAVKGTVSEFRSRAMEVLKGCEVEMIIIDEADRLKPDTFPDVRDINDKLEISVVLVGNDRLDAVIKRDEQVYNRFRAHRRFGKLAGVEFKKTVAIWEEKVLKLPVASNLTSSALIKILVKATEGYIGRLDEILREAAIKSLMKGHKRIEKEVLQEVAKEYS
>NC_013161.1|WP_015784538.1|3202046_3203723_-|DDE-type-integrase/transposase/recombinase
MNTFPNEQSNAIVLKNTIVSDLPETARAKMEVIQTLLEPCDRTTYGERLREGAKKLGVSVRTVQRLFKQYQEQGLAALVSMERADKGKHRINEFWQDFIVKTYQQGNKGSKRMTPKQVALKVQAKALEIGDEQPPTYRTVLRVLKPIQEKQEKTKSIRSPGWRGSTLSVKTRDGDDLEINYSNQVWQCDHTRADVLLVDRHGELIGRPWLTTVIDSYSRCIMGINLGFDAPSSQVVALALRHAILPKRYGDEYKLHCEWETSGTPEYFYTDGGKDFRSNHLAQIGSQLGFVHKLRDRPSEGGIVERPFKTLNQSLFSTLPGYTGSNVQERPKEAEKEASLTLRELEQLIVRFIVDKYNQSIDARMGDQTRYQRWEAGLRRQPEPISERELDICLMKAARRTVQRGGYLQFENVMYRGEYLEGYAGDTVILRYEPRDITTIWVYRQKKHQEVFLTRAHAQDLETEQLSVDEAKASAKKLRDAGKTISNQSILQEVIEREALVEKKSRKQRQKAEQAYKQEKQPSIIETVEPIEPEPLTQTEVDDIEVWDYDQLRDDYGW
>NC_013161.1|WP_015784539.1|3204088_3204307_+|hypothetical-protein
MQPIKKQFVTDENLNPVAVIIDYQDWQKIEALLKDEQEDSIESFKALSDYKGSIKLTIDPLEYQREVRNEWL
>NC_013161.1|WP_015784540.1|3204297_3204672_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MALSLPQFVLDTNIALYYLGNCLSEPLPSGVYFVSIITEMELLSYPELSEAEAQQIKNFLSYLTVININDSIKNLAIEWRRKYKLKLPDAIIVATTLSLEATLLTNDQQLTNIQDLSTRSLTIS
>NC_013161.1|WP_015784541.1|3204736_3206011_+|restriction-endonuclease-subunit-S
MSVEGWKDSSLISLLTILKSGGTPNTSRSDFYNGDIPFVAIEDMSASRKYLYSTVKSLTKEGLKNSNAWLVPENSLLYSIYATLGLVRINKIPVATNQAILAMIVNDEVVDQDYLYYWLEYIRDSIVNLSAQTTQSNLSATTVKPFLVQHPKDKEEQTQIATILSTIDRAIEQTETLIAKQQRIKTGLMQDLLTKGIDENGNIRSEETHQFKDSVLGRIPVEWEVKPLGEKARVRSGSTPLRSNEKFWIGGTVSWVKTSEVCFSKITETEEKITEQALKLTSLNLEPIGSVLVAMYGQGGTRGRCAILGIEATTNQACAAILGQQGEINQDYLFYYLSSKYNDLRTIGHGSNQTNLNGNLLRLFLIKVPSYKEQVKIADSFNKLKQMQDQLFSELSKLNSIKTGLMQDLLTGKVRVTELLKETD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_10

3440939-3441036

Orphan

Consensus_repeat	Method
TCCTAATTTAACCCAATAGGTAGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013161_10

>merge|NC_013161|10|3440939-3441036|CRISPRCasFinder
TCCTAATTTAACCCAATAGGTAGGGAATTATAGATTCATTATCCGCATCTAATTGTAAAACGTTTCCAACTATTCCTATTTAACCCAATAGGTAGGGA

>NC_013161|10|7|3440939-3441036|CRISPRCasFinder
TCCTAATTTAACCCAATAGGTAGGGA	ATTATAGATTCATTATCCGCATCTAATTGTAAAACGTTTCCAACTA
TTCCTATTTAACCCAATAGGTAGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015784661.1\|3437560_3438340_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|316044
NC_013161.1\|WP_012596004.1\|3430513_3431251_-\|DUF1995-family-protein	unknown	unknown	gnl\|CDD\|370448
NC_013161.1\|WP_015784666.1\|3450165_3450558_-\|arsenate-reductase,-glutathione/glutaredoxin-type	unknown	unknown	gnl\|CDD\|131736
NC_013161.1\|WP_015784663.1\|3442765_3444073_-\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|253386
NC_013161.1\|WP_015784658.1\|3430122_3430494_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015784665.1\|3446909_3448790_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236848
NC_013161.1\|WP_012595991.1\|3448965_3449928_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320684
NC_013161.1\|WP_012595998.1\|3438454_3439243_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|316044
NC_013161.1\|WP_015784659.1\|3432583_3435250_+\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_013161.1\|WP_015784664.1\|3444308_3446141_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_013161.1\|WP_015784660.1\|3435338_3436109_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_013161.1\|WP_012595989.1\|3450748_3451693_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NC_013161.1\|WP_015784667.1\|3453901_3454438_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180941
NC_013161.1\|WP_015784662.1\|3441279_3442641_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200454
NC_013161.1\|WP_012596003.1\|3431801_3432545_+\|DUF475-domain-containing-protein	unknown	unknown	gnl\|CDD\|274742
NC_013161.1\|WP_012596000.1\|3436131_3437409_-\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237999
NC_013161.1\|WP_012595988.1\|3451779_3453291_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_013161.1\|WP_012595987.1\|3453341_3453899_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
NC_013161.1\|WP_012596006.1\|3428773_3429823_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_013161.1\|WP_012595997.1\|3439294_3440881_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015784661.1\|3437560_3438340_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|316044	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain. This family is part of the beta-lactamase superfamily and is related to pfam00753.	3.03423e-38
NC_013161.1\|WP_012596004.1\|3430513_3431251_-\|DUF1995-family-protein	gnl\|CDD\|370448	pfam09353, DUF1995, Domain of unknown function (DUF1995). This family of proteins are functionally uncharacterized.	1.28194e-78
NC_013161.1\|WP_015784666.1\|3450165_3450558_-\|arsenate-reductase,-glutathione/glutaredoxin-type	gnl\|CDD\|131736	TIGR02689, arsenate_reductase, arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily. [Cellular processes, Detoxification].	3.29118e-84
NC_013161.1\|WP_015784663.1\|3442765_3444073_-\|DUF839-domain-containing-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	2.88421e-80
NC_013161.1\|WP_015784665.1\|3446909_3448790_+\|HAMP-domain-containing-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	6.84823e-59
NC_013161.1\|WP_012595991.1\|3448965_3449928_-\|M48-family-metalloprotease	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	9.73589e-68
NC_013161.1\|WP_012595998.1\|3438454_3439243_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|316044	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain. This family is part of the beta-lactamase superfamily and is related to pfam00753.	1.71596e-69
NC_013161.1\|WP_015784659.1\|3432583_3435250_+\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_013161.1\|WP_015784664.1\|3444308_3446141_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.65379e-175
NC_013161.1\|WP_015784660.1\|3435338_3436109_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.34953e-16
NC_013161.1\|WP_012595989.1\|3450748_3451693_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	3.16453e-144
NC_013161.1\|WP_015784667.1\|3453901_3454438_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180941	PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.	3.24989e-66
NC_013161.1\|WP_015784662.1\|3441279_3442641_+\|alpha-amylase	gnl\|CDD\|200454	cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Firmicutes, Proteobacteria, Actinobacteria, and Cyanobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	7.88067e-123
NC_013161.1\|WP_012596003.1\|3431801_3432545_+\|DUF475-domain-containing-protein	gnl\|CDD\|274742	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.	7.43791e-49
NC_013161.1\|WP_012596000.1\|3436131_3437409_-\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	4.94861e-26
NC_013161.1\|WP_012595988.1\|3451779_3453291_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_013161.1\|WP_012595987.1\|3453341_3453899_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	1.51387e-59
NC_013161.1\|WP_012596006.1\|3428773_3429823_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	2.28785e-150
NC_013161.1\|WP_012595997.1\|3439294_3440881_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.71867e-46

>NC_013161.1|WP_012595997.1|3439294_3440881_+|mechanosensitive-ion-channel-family-protein
MIKKLLKLLVIALISCLIVLPLNAQILVLPELNNTNTWLPTNNNSAEVSACIRLDGLCLFEVSATASDIAERVQQIEQRLHRISNLYFYQQDATLTIEKRTVNNLPNIHVKVNDLEIRLLTITSLDIKNQGVDLETKAQEIIEQVQEGLERGRKERELVSLVQKGLIAFIIFGLLLILNFLVLRLIKRLNTYRDRVAELRINQPISTELTRRQQWNIREVQYRLLQLLEVGLWLGATLVIVGLFPYTRIAQIWLITLLRIPARITIVGLGTYLLIRLSYALIAKLSTLLFSQDVLDFEFNQRLQLRLRTISLVSRSIITIIWVMVGIIVALSVIGVNIAPLLAGVGILGVAVSLASQNLIRDAINGFFIIVEDQYAVGDIIQVGQFSGLVENINLRITQLRDSEGRLITIPNSEVKIVANLSSNWSRADLSIPVAYESDIDEVLTLVHQVAEEMTKDKIWQENILETPEILGVDNFSERGLIIRVWIKTKPLKQWDISREFRRRLKIAFDRQGLPLSLPQQKLWLTNI
>NC_013161.1|WP_012595998.1|3438454_3439243_+|MBL-fold-metallo-hydrolase
MKRRQLLRYVGASAIATTAVPFVSQFQPVWGQSKDSLLVQYLGHTAFLFTGGGVKILANPFRTIGCTAGYQLPKVAADLVIISSRLWDEGAAENLPGNPKILYEPGVYEINGLRIQGVEIAHDRKGGKQFGMNVAWRWTQGGLRVVHLGGAAAPISIEQKILLGSPDLALIPVGGGRKAYSAEEAKQAMNTLNPRVMIPTHYLTSAADKKTCDLSPVDDFLGLVKEMNIRQINDNQLRLRSSDLPKSGTVIRVLNYNKALKG
>NC_013161.1|WP_015784661.1|3437560_3438340_-|MBL-fold-metallo-hydrolase
MQLTWLDSNSWLMEIAGKTILLDPWLVGSLMFNNLDWLFKGIKPKSYSIEQPIDLILLSQGLEDHAHPPTLKELDPSIPVVASPTAAKVVKGLGYTQVTSLSHWESYTLDNAISIKAVPGSLVGPQLIENGYIITDLIDQNRLYYEPHGYHSPTLKEESPIDVVITPVVGFNLLYVIPFLQGQKSTLELCKLVKPQFVLPTATAVGDVQYEGILAKLITQEGTVESFRQLLADYHLSTQVLTPKPGEIIELSLAKGVLT
>NC_013161.1|WP_012596000.1|3436131_3437409_-|cyclic-nucleotide-binding-domain-containing-protein
MAITAFFQGILGASSLALGASIGVFFKPSRTVSAAIMAFGSGTLIAAIALEIARRVYESTGVFPLLLGFSLGGVLFTSLSQYIDEHGGFLRKPASSRRYLFEQQQYEQELDVMQRIAHVEVLQHLPEAEKQAIAKLVTPVYVKPHHVICREGDQGDYFYMIAQGEAEVIKGRKVITVLGAGEIFGEMSLLTGEPRSATVIARTPMELYQLNEENFGQVLTRSPHLACALSRTLARRLRLSVDCQVAAERNLERWRNQLMEQVELDRLMREDPATIEGLVKRSAPLAILVGTLLDNIPEATVIGMNTGSNHFGWSFLLAVFISNFPEALTSASGMRQAGTPKNQILALWFGMVILSGFVAIFGYFLQDYGSDLLLGTAQAIAGGAILAMLASTMMPEAYELGGSSVSYSTIAGFLLSFLIAMSGHN
>NC_013161.1|WP_015784660.1|3435338_3436109_-|class-I-SAM-dependent-methyltransferase
MTSQPQHNFKDHFSTQSKEYAIYRPNYPSVLFEYLNSVVAKHKTAWDCGTGTGQVALELTNYFDKIYASDASKNQIKNAIRHPKIEYFLSVAETTSLPDQSIDLITVAQAAHWFNLEAFYEEVKRVITSKGILAMWCYGFFQIPPDEERLESALQEFYNNIDSYWPPERQLVNNQYKTIPFPFNEIKSPQILMQKEWTINQLVGYLLTWSSTQRFIKEKGQNMMFNKLETIINSVSSAEKLITITWPIYWRIGSLC
>NC_013161.1|WP_015784659.1|3432583_3435250_+|DNA-mismatch-repair-protein-MutS
MTISTTDSNPNPPLGNSKSPHKDYRPLDPEKLTPMYQHYVMVKEQYPNALLLYRVGDFFECFFQDAVTISQELELVLTSKEGGKEIGRVAMTGVPHHALDRYSRLLVEKGYAVAICDQVEDSAEAAAQGRIVERKITKLLTPGTLTDEGMLPAKRNNFLAAIVIAGNHWGLAYADISTGEFFTTQSQDIANLNLELLRLQPSEILIPTNAPDINSLLRPGEKSEYLVDGLPDCFCYSLRSQTHFSLNEAKPRLLITFNIRSLEGMGCEHLPLAIRAAGGLLQYIEDTQKAHQVPLQPLRTYNQVDFLILDHQTRRNLEITQTVRDSTFHGSLLWAIDRTCTAMGGRALRRWVLEPLLTIKGIEARQNTIQELVENPSLRQDLRQLLRSIYDLERITGRVGSGTANARDLLSLAESLVRLTDLAELANQGTSPYLKALQKIPPELEQLGKYVIDHLVESPPLHLKDGGVIRDGINTDLDAMRQRLDDDRQWLANLELTERQKTGVSNLKVGYNKTFGYYISLPRSKAELAPKNYVRKQTLTNEERYITPELKERETRILTAQDDLNQLEYEIFTQLRSKVAEKGQEIRSIAKAVAAIDVLAGLAEVAVYQGYCRPEIVEGRAIEITEGRHPVVEQSLAAGLFVPNSTKMGNTEANNYPDLIILTGPNASGKSCYLRQVGLIQLMAQTGSFVPAKSAKLGISDRIFTRVGAVDDLATGQSTFMVEMNETANILNHGTNKSLILLDEIGRGTATFDGLSIAWAVAEYLATEVQGRTIFATHYHELNELASILSNVANYQVTVQELPNEIIFLHQVRPGGADKSYGIEAGRLAGLPSSVIKRAKQVMSQIEKHSKIALGLRKGIKKVNPVKQTEIQGELIEQLDIFGDSESR
>NC_013161.1|WP_012596003.1|3431801_3432545_+|DUF475-domain-containing-protein
MLDQILDSSLALSLKTPLLLIVLVVLEAVLSADNAIALAAIAQGLGDRKSQQYALNLGLVFAYVLRMILILTATWVIKYWQFELLGALYLLWLVFNYFTSQEDEKHHHHSIQFQSLWQAIPLIAVTDLAFSLDSVTTAIAIADDLWLILMGGTIGVITLRFLAELFIRWLQEFTYLEDAGFVTVGFVGIRLLLRVINPELVPPEWLMISLIAMVFVWGFSKRSNSVVETSVHPENQPMEEPEKISSP
>NC_013161.1|WP_012596004.1|3430513_3431251_-|DUF1995-family-protein
MLAVPNTLEEAFLQAKEATKLALEANLGRIQVELVVPEIALQAQGLALEFTTLFDDLSSLKVIFPDTGAAALARRDWGETPFKVTDLGSRATSVEMKVSEQDRAFLLVCPSSVEVESVEKLCNLAGDRPVVLLIPQLEDVSVVGIGYAARQLRERFISTLNSAYYFRPLEGAAILRSYPSPWNVYLETETGYELIASEPQKPLGEALEIILTKATGSEGDHQDSPPPKKSGLLTSMQQFLKALSQ
>NC_013161.1|WP_015784658.1|3430122_3430494_+|hypothetical-protein
MVSSTTMEGFLTANPGDRISSEPQTIEEKAKQIAVDKYDITGEHIQVPTYFIVNYPNGETKALHHVRDAKAISDVIRQMRLEEETTTTQTSSSPKNINGLIIILGLAIVGLFLMTLIISIGVF
>NC_013161.1|WP_012596006.1|3428773_3429823_-|glucokinase
MTILLAGDIGGTKTILRLVNSEYAQNSDVLPHQTTLYEQTYSSQEFTHFVPIVDRFFEEASQKLGQPFSVEKACFGIAGPVVNNTSELTNLSWYLDGDRLQRELSLDKVSLINDFAAIGHGILGLTSNDLFPLQNVPCDPQSPIAVLGAGTGLGECYLIPSNQGKYQVFPSEGSHADFAPRSELEFELLNYIQKTFDLERVSIERVVSGMGIGTIYQFLRDRYPEKESAPLKQIYQTWQQKEDLNIDLSAEISKTALGNGDPLCQQTMQIFIEAYGAEAGNLALKLLPYGGLYVTGGIAPKILPLMQQGNFMKAFLTKGRLSPLLNKIPVYIILNPKVGLIGAALYAAN
>NC_013161.1|WP_015784662.1|3441279_3442641_+|alpha-amylase
MNHDLIITKIRSGLTNIQKIAIVLFITLMIVMGYTPSVKADVIYQAFDIPFQEIKNQLPQLKANGFTYIQVSPPEKSNPSDQWWARYQPVDFTVIESRLGNENDLKELINAAHEQGLKILVDVVLNHMANASPYVENLQYPRFSRADFHPRGDVNDNNCPTVTNGWLGGNLPDLNTSSPYVQGELRNYLTKLLDLGVDGFRVDAIKHIAVADARNIFEVVPSDKYIYGEIIGATCNEYSTYPAIHNIDITDYGLLGRLKTAFSLGGDLRSLINPQGVLPGTIEVTFSKTHDTIPRDGRCEGLCQGYNFDSRDQMLANAYLLARQDGLPLIYLDDGNDPIVRAGANFHEKLLAQRQNFRNGKEIANGGNSPNLLFIERGNQGIAMINKAGEPFVQSVARMPGLEEGCYQESVFDFTMCVGRGRDGQKYVTQWGSPDKGGLEIPARSALFFVKKS
>NC_013161.1|WP_015784663.1|3442765_3444073_-|DUF839-domain-containing-protein
MSLSRRKFLTIAGMGVATGVAAASLKNLYIRVANGQNPTIKGLGKLVKDPNGILDLSPGLQYRIISEGGKPMSDANPVPTSFDGMAAFPGKNGQTILIRNHELSPSQSPGVIATEAFQYDKLSKGGTTTVIVNSDRTLDKEFVSLAGTNRNCGGGTTPWGSWISSEEDVSTPKTNIPEDPNSVSVKHGYNFEVSTQEKREKPIPLTTMGRFRHEAIAVDPKTGYIYQTEDQVDSCFYRFRPNKSGNLQEGGTLEALVIDGMPKINTSKNYPLNQPKAVKWVKLEDVDPEQDTLRYEAQNKGAAIFSRGEGICLGNGEIYFTCTDGGNAEKGQIFRYNPVNETISLFVESPGKEVLDYPDNLILSPFGDLIVCEDGQDEQFLVGVTPQGEIYQLGRNALNNSEFAGVCFSPDQKTMFVNIYSPGVTLAVWGNWQKG
>NC_013161.1|WP_015784664.1|3444308_3446141_-|ABC-transporter-ATP-binding-protein
MTVLSPLPNAKTPQSPRESDSRLILRLVPYVRRHPRLLLISMGLLIPLSIAGAIQPLIIGQAVSLLRQESTWRFLKTISIQEGIQFLSILLLITIIIRVICASCQGYLVQKIGQQITADIRKDLFTHVTSLGTSFFNRTPVGKLVTRLTSDVEALGDVFSSGAIGVLSDAIYILAIIITMFTLHGKLALMLLLMLIPVTGLIIYFQTEYRKANYQVREELSQLNSMLQENVSGINVVQLFRREHFNGELFRTINQRYRQAVDKTIFHDSAVSATLEWISLVAIAGVLWLGGIFILDDAITFGTLSAFILYSQRLFNPLRQFADKFTMFQAGFTAIERISELMNEPIDIPEPEAKITSFSTLREQNTTGEIRFENVWFGYKKDEYVLKDLDFTIHPGEKVALVGPTGAGKSSIIRLLSRLYDPTQGRILIDGVDIRDISKTELRQYVGVILQETFLFAGDVIRNITLGEDYCLERVQNAAKLTNVDAFIEELPQGYQTEVRERGTNLSGGQRQLLAFARVAIRNPRVLVLDEATSSLDVKTEALIQQALDNLLVNRTAIIIAHRLSTIRDVDRILVLKQGELIESGNHEELLKQNGLYSSLYKLQMMGYEE
>NC_013161.1|WP_015784665.1|3446909_3448790_+|HAMP-domain-containing-protein
MILGRSSFRRILVSRLLLVSVPVLLMGVYVTYRKARSAFLETARQNLTESAIRKGQSISQSIESLQANLVTASDSVVLKEGSQQDQNNFLKQLSTTLPTQIQCIQLQDLRTGKLTASTCDQRIGNPIKVSNWSQQQTQLLTNPDAIFIDLLLPNQLSKQPSSESQLVLFLAAPVYDSQGGLRYALKIQSALLEKEKVSPGSLAGYPVVIAQSGTILAHPFRQRVGRNIEQEADANRLKILIGNAIAGRQDFLHLFALEKDGVELVAGYSSIPSPVTQDKGQKWVILAVSPLVDALSPLVEIRRVLFYMVFALLTASFLAVLYIAWELARPVEKLRDYAINKANLNAKQPMRLNFRIREVDQLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFLATTSHELRTPLNGIIGCLHILKEGYCDSKEEELEFLQQAEQAAVHLLGIIDDVLDLAKIEAGKLSVSLEPVDLTSLLSEVINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVILNVLGNAIKFTEKGNITIKTHIEENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISRNLMQLMGGNITLSSEGIDLGTTVKICLPYSDNLGQ
>NC_013161.1|WP_012595991.1|3448965_3449928_-|M48-family-metalloprotease
MPTYTGISSEAFRHPLDKQAEQTLRSVPGFNILAKSFLEYLYERPQQIFLMGNSIKAGPRQYPTLYGIFRECMKDLDISSEPSLYVSQNPQVNAYSLGHEQPYLIFNTGLLDLLNETELRTVIAHELGHIKCDHSVLIQMAIWAMGAASLLGELTLGLGNLITTGLIYSFYEWRRKAELSADRAALLVMDDLNPILNSMMKMAGGTQRYGNECHLDEFIRQSEQYRDLDQDNLNQFYKFFIYNGGNGVFLTHPFPVERLHYLTEWSTSQEYQNIRQGNYKRVTKEGSVDVNVEEEGNEVDILRKQIEELQKEIDRIKSEN
>NC_013161.1|WP_015784666.1|3450165_3450558_-|arsenate-reductase,-glutathione/glutaredoxin-type
MKKVMFVCKRNSCRSQMAEGFAKTLGQGKIEVTSSGLEASRVHPTAIEVMGEIGIDITNQTSNPLSEFTAEDYDAVISLCGCGVNLPQEWVLREIFEDWQLDDPDGQPLETFHRVRDEIKERVATLIAKL
>NC_013161.1|WP_012595989.1|3450748_3451693_-|F0F1-ATP-synthase-subunit-gamma
MPNLKAIRDRIQSVKNTKKITEAMRLVAAAKVRRAQEQVIATRPFADALANVLYNLLNRLQYGDVSLPLLQQRQVKTVALVVVSGDRGLCGGYNTYVIRRAEQRQKELEAQGINYRLITIGRKATQYFSRRQAPIEKTYVGLNQIPTADEAGSIADELLSLFLSETVDRVELIYTRFVSLISSRPVVQTLLPLTVQGLEVEDDEVFRLITRDGKLRVERETIAQEVSSFPQDMIFEQDPIQILDALLPLYINNQLLRGLQEAAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQQLMEVVAGANAL
>NC_013161.1|WP_012595988.1|3451779_3453291_-|F0F1-ATP-synthase-subunit-alpha
MVSIRPDEISSIIRQQIESYDQTVTVSNVGTVLQVGDGTARIYGLEQAMAGELLEFEDGTVGIALNLEEDNVGAVLMGTGLDIQEGSTVKATGKIAQVPVGEALIGRVVDALGRPIDGKGDINTTETRLIESMAPGIVARKSVCEPMQTGITAIDAMIPVGRGQRELIIGDRKTGKTAIAIDTIINQKSEDVICVYVAIGQKASTVAQVIGTLEEKGAMAYTIVVAANANDPATLQYLAPYTGASMAEYFMYKGKATLVIYDDLSKQAQAYRQLSLLLKRPPGREAYPGDVFYIHSRLLERAAKLSDALGGGSMTALPVIETQAGDVSAYIPTNVISITDGQIFLSSDLFNSGFRPAINAGISVSRVGSAAQTKAMKQVAGKLKLELAQFAELEAFSQFASDLDAATQSQLARGQRLREVLKQPENSPLAVWEQVAIAYAGLNGYLDEIPVPKVSEFAAGLRDYIKTSKAKFADIVGSEKKLTDEAETLLKEAIAEYKQAFGV
>NC_013161.1|WP_012595987.1|3453341_3453899_-|F0F1-ATP-synthase-subunit-delta
MKGSLISSAIAEPYAQALMSVAQAHNLTEQFGDDCRSLIAILEESRDLQGLILSPVIKETDKKAVLRRMMGDRTSPYLLNFIMLLVDKRRIIFLEEICQQYLTLLRKLTNTVLAEVTSAKELSDRQCRAVTDKIKDLTGAQGVEIKTSVDPDLIGGVTIKVGSQVFDASLRGQLRRVSLSLGGTA
>NC_013161.1|WP_015784667.1|3453901_3454438_-|F0F1-ATP-synthase-subunit-B
MIDSLLILATEAHGAGEGGFGLDLNLLETNLINLAILVGLLVFYGGKVLGNILTERRSQIAEAIQEAEERQRKAAEALATEQEKLTQAQAEAERIRQAAKERAATLSAEIAEKSRQDVERLRETAASDLSSEQERVIAQLKKQIAQMAVEKAETQLKARIDDGIQERLIDRSIAQLGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_11

4298967-4299800

TypeV-U2

V-U2

Consensus_repeat	Method
GTTTCAATCCCATTGCTAGGATTCATTAATAA--GAAAC	PILER-CR
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CRISPRCasFinder
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CRT

11 spacers

c2c8_V-U2

The CRISPR arrays of NC_013161_11

>merge|NC_013161|11|4298967-4299800|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACTTATTTCGCCCTTGAGATTAATAGTAATCGGCTTGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACTCAATATAAGGCTGAGGAGAGGCAACAGTTAGGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACAATAAAAAATCGTCGTATAAAGGGTAGTAGAGCCTTCGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACACATCACCACAGAGGAAAAAACAATGGCCACTGAAGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACACTGTTTCTCCTGCGCTAAATTCTGGAATCATAAGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACTAGGGAGTCGCTCTTGAGAGTTCAACGCCTGAAGAAGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACCTTCAACACCGCGACTTAATTGAGATAAAGCAATGTTTGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACCAAGAATTAGATCTTGACTGAACTTCAACTCAAAAGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACGCCGCTTTAGTAGGGTTCTCGCGTGTAAATTTTTTGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACCAGTATTAGCGATCGCTTTTAATGCGGTGATATCCGCGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAACTTGTTTAAGCGTTCCCAAGGGGTTAAATCAACCTCATGTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC

>NC_013161|11|7|4298967-4299800|PILER-CR
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TTATTTCGCCCTTGAGATTAATAGTAATCGGCTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TCAATATAAGGCTGAGGAGAGGCAACAGTTAG
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	AATAAAAAATCGTCGTATAAAGGGTAGTAGAGCCTTC
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	ACATCACCACAGAGGAAAAAACAATGGCCACTGAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	ACTGTTTCTCCTGCGCTAAATTCTGGAATCATAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TAGGGAGTCGCTCTTGAGAGTTCAACGCCTGAAGAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CTTCAACACCGCGACTTAATTGAGATAAAGCAATGTTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CAAGAATTAGATCTTGACTGAACTTCAACTCAAAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	GCCGCTTTAGTAGGGTTCTCGCGTGTAAATTTTTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CAGTATTAGCGATCGCTTTTAATGCGGTGATATCCGC
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TTGTTTAAGCGTTCCCAAGGGGTTAAATCAACCTCAT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC

>NC_013161|11|8|4298967-4299800|CRISPRCasFinder
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TTATTTCGCCCTTGAGATTAATAGTAATCGGCTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TCAATATAAGGCTGAGGAGAGGCAACAGTTAG
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	AATAAAAAATCGTCGTATAAAGGGTAGTAGAGCCTTC
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	ACATCACCACAGAGGAAAAAACAATGGCCACTGAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	ACTGTTTCTCCTGCGCTAAATTCTGGAATCATAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TAGGGAGTCGCTCTTGAGAGTTCAACGCCTGAAGAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CTTCAACACCGCGACTTAATTGAGATAAAGCAATGTTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CAAGAATTAGATCTTGACTGAACTTCAACTCAAAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	GCCGCTTTAGTAGGGTTCTCGCGTGTAAATTTTTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CAGTATTAGCGATCGCTTTTAATGCGGTGATATCCGC
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TTGTTTAAGCGTTCCCAAGGGGTTAAATCAACCTCAT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC

>NC_013161|11|8|4298967-4299800|CRT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TTATTTCGCCCTTGAGATTAATAGTAATCGGCTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TCAATATAAGGCTGAGGAGAGGCAACAGTTAG
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	AATAAAAAATCGTCGTATAAAGGGTAGTAGAGCCTTC
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	ACATCACCACAGAGGAAAAAACAATGGCCACTGAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	ACTGTTTCTCCTGCGCTAAATTCTGGAATCATAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TAGGGAGTCGCTCTTGAGAGTTCAACGCCTGAAGAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CTTCAACACCGCGACTTAATTGAGATAAAGCAATGTTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CAAGAATTAGATCTTGACTGAACTTCAACTCAAAA
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	GCCGCTTTAGTAGGGTTCTCGCGTGTAAATTTTTT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	CAGTATTAGCGATCGCTTTTAATGCGGTGATATCCGC
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC	TTGTTTAAGCGTTCCCAAGGGGTTAAATCAACCTCAT
GTTTCAATCCCATTGCTAGGATTCATTAATAAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015785107.1\|4294106_4295546_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_013161.1\|WP_015785101.1\|4287856_4288912_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|340818
NC_013161.1\|WP_015785108.1\|4295608_4296367_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015785109.1\|4296395_4297766_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224276
NC_013161.1\|WP_015785114.1\|4303229_4304279_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NC_013161.1\|WP_015785103.1\|4290578_4291913_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_013161.1\|WP_015785104.1\|4291983_4292202_-\|prevent-host-death-protein	unknown	unknown	gnl\|CDD\|171099
NC_013161.1\|WP_015785116.1\|4304925_4306179_-\|RNA-polymerase-sigma-factor-SigC	unknown	unknown	gnl\|CDD\|236067
NC_013161.1\|WP_015785102.1\|4288947_4290549_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227621
NC_013161.1\|WP_015785119.1\|4308140_4308422_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|235659
NC_013161.1\|WP_015785105.1\|4292471_4292681_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NC_013161.1\|WP_015785111.1\|4300241_4301726_-\|transposase	c2c8_V-U2	-	gnl\|CDD\|223747
NC_013161.1\|WP_015785117.1\|4306736_4307636_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_013161.1\|WP_015785106.1\|4292766_4294110_-\|Zn-dependent-protease	unknown	unknown	gnl\|CDD\|223389
NC_013161.1\|WP_015785120.1\|4308425_4309109_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NC_013161.1\|WP_015785118.1\|4307632_4308031_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_013161.1\|WP_015785112.1\|4301911_4302457_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NC_013161.1\|WP_015785115.1\|4304552_4304921_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180986
NC_013161.1\|WP_015785113.1\|4302453_4303203_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NC_013161.1\|WP_015785110.1\|4298039_4298843_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015785107.1\|4294106_4295546_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	3.67355e-91
NC_013161.1\|WP_015785101.1\|4287856_4288912_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|340818	cd03785, GT28_MurG, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. MurG (EC 2.4.1.227) is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.54492e-130
NC_013161.1\|WP_015785110.1\|4298039_4298843_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	9.32431e-96
NC_013161.1\|WP_015785109.1\|4296395_4297766_-\|hypothetical-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.1804e-16
NC_013161.1\|WP_015785114.1\|4303229_4304279_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NC_013161.1\|WP_015785103.1\|4290578_4291913_-\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_013161.1\|WP_015785104.1\|4291983_4292202_-\|prevent-host-death-protein	gnl\|CDD\|171099	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM.	4.38052e-07
NC_013161.1\|WP_015785116.1\|4304925_4306179_-\|RNA-polymerase-sigma-factor-SigC	gnl\|CDD\|236067	PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated.	0
NC_013161.1\|WP_015785112.1\|4301911_4302457_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	4.47182e-20
NC_013161.1\|WP_015785119.1\|4308140_4308422_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|235659	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed.	6.70403e-43
NC_013161.1\|WP_015785105.1\|4292471_4292681_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	3.07265e-12
NC_013161.1\|WP_015785111.1\|4300241_4301726_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.60641e-25
NC_013161.1\|WP_015785117.1\|4306736_4307636_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.63473e-137
NC_013161.1\|WP_015785106.1\|4292766_4294110_-\|Zn-dependent-protease	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	1.06649e-35
NC_013161.1\|WP_015785120.1\|4308425_4309109_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	2.22728e-152
NC_013161.1\|WP_015785118.1\|4307632_4308031_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.2256e-32
NC_013161.1\|WP_015785102.1\|4288947_4290549_-\|hypothetical-protein	gnl\|CDD\|227621	COG5305, COG5305, Predicted membrane protein [Function unknown].	3.7959e-74
NC_013161.1\|WP_015785115.1\|4304552_4304921_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|180986	PRK07459, PRK07459, single-stranded DNA-binding protein; Provisional.	1.16245e-74
NC_013161.1\|WP_015785113.1\|4302453_4303203_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.39077e-60

>NC_013161.1|WP_015785110.1|4298039_4298843_+|carbonic-anhydrase
MKKLIEGLQQFQTGYFSSHKALFEELSHGQHPRILFITCSDSRIDPNLITQAQVGELFVIRNAGNIIPPYRAANGGEGAAIEYAISALNIEEIIVCGHSHCGAMKGLLKLDSLSEKMPLVHDWLKHAEATRRVIKDNYGHFQGEELLEITVAENVLTQLENLQTYPVVRSRLHQGNLTLHGWIYRIETGEVLAYDGLSHDFVAPQSRLSVPEPEYNLHPSCPVSTQAPFTIPQSNGKGSDNANNGSSLPGYEHLSVEQSRRIYQGSR
>NC_013161.1|WP_015785109.1|4296395_4297766_-|hypothetical-protein
MKASQLLQQYEQGRRDFRGEDLRGQSFRGKNLAHTDFSQADIRGTNFTQANLTGAKFCQAKGGLTKPREILLGLISFLLAGLSGIFSGLSGGLVLLIFDSSHLINQIVGWTALIILMIFCIFSYYQGLTGGVAAATLSFMGTLVVALVITQEVSISVTTILYIGVIFIGHVAVALAGALTGALAGAFAGATVGAVIGVGAFPLAIIFALALAEANDKLFSIAGAVTAVIILSLLSIYLGLRAMKGDNRDSWLRHLAFAFSAIGGTSFYRANLTNADLTGALLKGTDLRDADLTRTRFYQTQQLNRARVDNTILAQPEIRDLLIDPTTGYKQYYYKANLRGANLDYANLHGANLKQADLTDATLRHANLEGANLTKILASGTDFSGATFHGVCIEGWKIDVFTKLGQVDCEYVFLREKPNEYGSRERCPYDPEGKFEPGDFELLYKVRNYAQAQLED
>NC_013161.1|WP_015785108.1|4295608_4296367_-|hypothetical-protein
MSEEALIVNRTGEPYQPARVYYQVSNKKTVLGVFKKLKCMDYEPMRDRWVWLYIAEAKKLRFEISYNKLPKNDPIVLGYFVFRSDQEMLLELRSFERVSAALNFFSPRINWRAAEPTRLRIVNKLFMTSQDNPPSPPNSFDEFFERDNVYINRPELLEQDIIEIQNQYDNEDEKSSAISDYMKQKARKPLPEIEEIPINVHNGGLLVLNMSLMMKHIETWERFQGNENFVMQDLIDKMLADIPDQELDLEED
>NC_013161.1|WP_015785107.1|4294106_4295546_-|TldD/PmbA-family-protein
MQINLQTILNSINLNADWIGLRQVTETTTTRSMRDGKPQSNGRSQTQGIMVEVLAQGQFGYSATNYLTIESIQKAAEVAYKQAINAANWAVHSFSIDQRPKAVGHYYSPYLKPLELLSPQDINDLLFKVCETLKVSDKIVKTSALAQITETEVQLISSNGSDIYQKFLFIVSNYAATAQDASIIQTRTDSGLGSRCYQGGTELLDLETSINRAKIIGEQAVELLSAPDCPTATTQLVLAPDQMMLQIHESIGHPLEIDRILGDERNYAGSSFVKLSDFGNLVYGSPLMNVTFDPSVSGQFASYGFDDGGLQATREYLIKDGILLRGLGSLESQTRAKIPGVANFRACSWNRAPIDRMANINLEPGTSHFNEMISEIEYGVYMESNRSWSIDDYRNKFQFGCEYAKLIENGQLTKTVKNPNYRGITNQFWRGLSQVGNESTVEMYGTPFCGKGEPNQAIRVGHSSPVCVFDNVEVFGGVA
>NC_013161.1|WP_015785106.1|4292766_4294110_-|Zn-dependent-protease
MNLDRLEQLEVTFNQLSEFLIDQLNNGEHLSLELSSEQTQFIRFNNAKVRQTGLVTDGNIKLSFIANQRTVFMMFPFTGDLTTDQQNGLESLNYLRQDILQVPEDPHLVLPENKGTTREVYRGDLLVPEIAVKTLLPEVQNLDMTGIYTAGQVIRGNANSEGQNHWFATDSFCLDYSLIAPSEKAVKGILSGRNWDEQQYQTQIKSSQNQLLALNKSPKQIQPGGYRTYFAPAATADLLGMLSWGAISEASLRQGGSALMKLKEGKTLSPKLNLQENFSLGSVPKFNEFGEIFPDILPLITEGNLINTLVNSRTATEYKITANGANSSESLRSPELGKGTLSSEDIFNTLGTGLYLSNLHYLNWSDRTGGRITGMTRYACFWVENGEIVAPIKDLRFDDSLYRFWGENLEALTDFQEFIPETNTYERREIGGSLVPGMLVNDFQFTL
>NC_013161.1|WP_015785105.1|4292471_4292681_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKLPYSIVIQWSNEDQKYIVSLPEFAPYAHTHGETYEESIKNAQEVLELLIEDYQARGKPLPIPLISSA
>NC_013161.1|WP_015785104.1|4291983_4292202_-|prevent-host-death-protein
MFSYEITSPTEAKNSFFELLYKLAKNHQVFLINRQERENVALIAESNLVNLVETVYLLRSPANASRLFAALE
>NC_013161.1|WP_015785103.1|4290578_4291913_-|replicative-DNA-helicase
MVADYTLPPQNIEAEESILGGILLDREAMGRVADLITPDAFYVQAHKDIYEAALKLYAQGKPTDFLTVKSILEDHQLLEKVGGTDKLNQLLDSTVAAVNIDRYAALVMDKYLRRQLISAGHEITELGFETTKELEQVLDESEKKIFSLTQKRPQEGLIPIADTLVQTYSELEKRHQKTALPGIQTDFYDLDAMTGGLQRSDLIIIAGRPSMGKTAFGLAMAANIAQKSQLPVAIFSLEMSKEQLSLRLLAAESKIEGNRLRTGRFVQNEYEQLSMAIGTLSEMPIYIDDSATTSVMQIRSQVRRLQAEKKGELGLVLIDYLQLMEGSGGDNRNQELSKITRSLKGLAREAQVPVIALSQLSRGVEARNNKRPMMSDLRESGAIEQDADLIMMLYRDEYYNPDSVDRGIAEVIITKHRNGPTGVVKLLFQPEFTQFLNMQTKSNY
>NC_013161.1|WP_015785102.1|4288947_4290549_-|hypothetical-protein
MNLSNLIKPKQFQDYFYLVILIIIILGIFFRFYNLDKKVYWHDEVYTSLHLTGYTLPEWQDPLFTGNIIGVDDLQYYLQSNPNKTLNDTLKVLAVDDPHHPPLYYILARYWRQFWGDSINIIRSFSAVCSLLVFPAIYWLAWELFGTSLVGIMSVGLIAISPFFILYAQEAREYSLWTVFVILSNSSLLRAIKLTQKNPNLQNNFYPFWGLYALLTTFSLYTSLVTIFVIIAQTTYTILTEGFRFTKSVILQGLSVLASLIAFLPWILVFIDNYEQYKLITSWTKEIKLPIFELFKNWGLNLSRIFFDINWNLDNLLIYLVVFLSLVLVIYSLYFLCQNTTKQAWGLIFALIVTPFIFLFIPDLLWGGVRSLSPRYLIPSIIAIYLAVAYLLVNQLTQKNSNKIRIWSIITAIIFSSGVISSAISSQADTWWTKVISSGFPQVSRIINSSDNPLLISNDKSYHPGNIMSLSYLLKSEVKLQLLSEEKGYKIPDNFSNIFLLSPSDEFRKNLENQSSVKLKKVFSDNHLQLWKI
>NC_013161.1|WP_015785101.1|4287856_4288912_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MARLLIAASGTGGHLFPALALAEHLPDYQIEWLGVPDRLEQTLVGDRYPLHSIAVEGFQTRSVLKNLQILFKLIRGIFEVRHLIKTHHIDVVFTTGGYIAAPAILGARLAGIRAILHESNFIPGKVTRLLSRFCDRVALGFAGTAQYLPKAKTVWVSTPVRSPFYTPQPLDLPIPENVPLIAVIGGSQGAIAVNQLVRQCVPSWLAAGAYIVHLTGKNDPEAETFKHPHYFALPFYDNMAGLLQRANLAVSRAGAGTLTELAITGTPSILIPYPFAAEDHQAYNAQVFADAQAALLYRQAQLTPEILENAVLNCLKHPETLESMAKQAQRLAVLDSAEQLATLVNGFVQVT
>NC_013161.1|WP_015785111.1|4300241_4301726_-|transposase
MFAIKSMSELVQHHITIQLKAYLSTTQTALFENWTDSLRPLYNLALGLLYEEQQRRWRTNQKFLKNYLDKSSLQTYLNEIENKPDIYPVEWHITKALPECDWLTKEENEVRKKDNTKSLACRTINRDGNFFTPIRPYWHLEEPAKLAKFKCFTNQWLISCNLLTNYHLQKLLNVTMKVRQSFISMNLMEAWKRYQKGDFRKLKFKSKRNPVISLCNKQTAIIKFDPEANNCQLLGKEFGLIEFRGLHNRHQGQIQPRNGSLTKKADGYYLNLVFQVEHKPIPDSDLQVGIDPGLVTLLTLSDGKCISNPRFLKENERHLTVLQKKLSRQTPGSKNWEKTKKALAKIHKQTADHRKYYNHKVSTHLVNKYGAIAIEDTKLTNMNKRPKAEKREDGKGYEHNGAKAKAGLNQSLHDAGLGQLRAFLESKANSYENRHIERVKANYTSQKCSRCGHTDKENRLTQASFYCLKCGLEMPADLNAAINIEQAAFGLDKS
>NC_013161.1|WP_015785112.1|4301911_4302457_-|rod-shape-determining-protein-MreD
MKVWFHYSVVNRLVIAGSVILCLLLSPTRLPGMELLGVGTNWVLIWVVVWSLKRSVFQGITAGLVLGLIQDGLTGAYPSHVFSLVVVGFLTAKLQKQRYIQEDFISVALITFAMVIVAESITAGQYILADIRPLEEIWLDYQRFVLSSAILSSLWAPVLYYPLNSWWQKAPVTSPYKVKKR
>NC_013161.1|WP_015785113.1|4302453_4303203_-|rod-shape-determining-protein-MreC
MLIIRRWYVNYGSKLVWAVVALAIGWFLRQTQGAPLLELYYWVSRPFHSAPPSLLEERLTNARIVELEQRLAELERQNQQLQRLLGYYQQQQAGVITAPIIGRSTDDWWKQVIIGRGSQDGIKVGYVVTGIGGLIGRVIDVTPNTSRVLLVSDPTSRVGATVSRSRTMGVVEGESAQIAVMRFFEKVPQVRPGDTITTSPVSRLFPGGLPIGQVESVNLEKSPAPEAKIRLTAPINDLEWAIVHPFESQ
>NC_013161.1|WP_015785114.1|4303229_4304279_-|rod-shape-determining-protein
MPRNFWNRFSLSRDMGIDLGTANTLVYVSGKGIVLEEPSVVAIDQDRKIPLAVGEEAKKMLGRTPGNVIALRPLRDGVIADFLSAMIMLKEFIQRAHEGSPLGNPRMVIGIPSGITEVERRAVIDAAREAGARDVGLIEEPIAAALGAGLPVTEATGNMIVDIGGGTTEVAVLSLQGRVLSESVRVAGDELTESIIGYMKKVHNLVIGERTAEEIKIRLASAYPLRHEEEPIMDVRGLHLMSGLPRTVTVKGEEVRESMAEPLAVIVDAVKRTLERTPPELAADIIDRGIMLAGGGALLRGLDTLLSHETGIVTHIAEDPLRCVVKGTGEVLKNPKILDRVLSESSRLV
>NC_013161.1|WP_015785115.1|4304552_4304921_+|single-stranded-DNA-binding-protein
MSLNVVHLVGRAGRDPEVKYFESGKVLCELTLAVNRRTSKSDEPDWFNLKIWGKTAEIAANYVRKGGLIGIQGSLTIETWTDRNTGANRSKPVILVDRLDLLGSKRDEEGGLGSNYPMTDEF
>NC_013161.1|WP_015785116.1|4304925_4306179_-|RNA-polymerase-sigma-factor-SigC
MPATPFYSDTDYYSPLASDGNASSVGFSEKAYELREGSLELELHGIDFTEAEKNHHQGSTDLVRLYLQDIGRVPLLNQEEEVIKAQQVQSYVELLDLRQKAAQAGDRAIQQLIEMAEIHDRLFISLGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQLETIEKVGIRAKEQMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAISTQSRIIRLPVHITEKLNKIKRAQRKLSQEKGRKATIEEMSKELDMSAEQIREVLLRIPRSVSLEVKVGKEKDTELVDLLETECQSPEESLISESLRKDLQVLLEDLTEREQDVIKLRYGFEDGTCYSLADIGRVLELSRERVRQIEAKALQKLRQPRRRNQIRDYFESLT
>NC_013161.1|WP_015785117.1|4306736_4307636_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MNTPLIVICGATATGKSGLALTLAQRLDSIIISADSRQVYREFDIGTAKPTHAEQDLVPHYLIDICSPTQTFTVADYQDKVTKLLQSTPCLSPSLLVGGTGLYIKSIVRGLKIPRVAPQPQLRQELEALGQAQCYAMLNQVDSLGAHKIHPHDQVRTLRALEVFYVTGVPISQQQGEYPPTYPILQIGLDSTPDALEKRIEQRTQMMLTMGLVKEVETLIEKYGSDLPLLNTLGYAEIKEYLQGKMSLDQAKAAIILHTRQFAKRQRTWFRSYRDIQWFDPTSVNFLDNVWMTIQQFLA
>NC_013161.1|WP_015785118.1|4307632_4308031_-|transcriptional-repressor
MKGQRTRSQERIVRLLKSLNHAVSAQDLYLELKTRDQALGLATVYRSLEALKLEGTVQARTLTNGEAVYSLVAKDQHHLTCVNCGQSFPIDECPVHDLEQRLEKSHRFQVYYHTLEFFGLCYDCQLSAERNR
>NC_013161.1|WP_015785119.1|4308140_4308422_+|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MSQQYQCRIYVTLRPSVLDPAGTAVESGLKQLGYEGVERVRIGKYIELNLTAKDEIEAEKQLHEMCDRLLANPVIENYCFEMTPVHATQVCGG
>NC_013161.1|WP_015785120.1|4308425_4309109_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKFGIVVFPGSNCDRDLQTVTQGLLNQPTRMIWHQETDLNDLDVILIPGGFSYGDYLRCGAIARFSPIMPHVIEHANQGKLVLGICNGFQILTEIGLLPGALIRNRDLHFICDRVSLRVEHNQSPWTQTYTSEQVITLPIAHGEGRYYADGDTLKQLEDNGQILLRYCTPTGEIEETANPNGSLYNIAGISNKQGNVFGLMPHPERASDPLVGAMDGRGLFEGLIAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_12

4370008-4370088

TypeV-U4

Consensus_repeat	Method
TTGCTGTTTATTGGCTTCTTGAAAGGC	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_013161_12

>merge|NC_013161|12|4370008-4370088|CRISPRCasFinder
TTGCTGTTTATTGGCTTCTTGAAAGGCTTGTATTTGTTGCCGATTAGCCTCTATTTGCTGTTTATTGGCTTCTTGAAAGGC

>NC_013161|12|9|4370008-4370088|CRISPRCasFinder
TTGCTGTTTATTGGCTTCTTGAAAGGC	TTGTATTTGTTGCCGATTAGCCTCTAT
TTGCTGTTTATTGGCTTCTTGAAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015785178.1\|4378018_4379812_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NC_013161.1\|WP_012594446.1\|4376696_4377908_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_013161.1\|WP_015785173.1\|4370664_4371939_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_013161.1\|WP_015785164.1\|4362616_4363549_-\|DUF1460-domain-containing-protein	unknown	unknown	gnl\|CDD\|369314
NC_013161.1\|WP_015785177.1\|4374993_4376304_-\|phytase	unknown	unknown	gnl\|CDD\|226698
NC_013161.1\|WP_015785169.1\|4366681_4367509_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_013161.1\|WP_015785180.1\|4382183_4382609_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_013161.1\|WP_015785163.1\|4360527_4362273_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NC_013161.1\|WP_015785170.1\|4367663_4368605_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_013161.1\|WP_015785179.1\|4380233_4382183_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
NC_013161.1\|WP_015785175.1\|4373438_4374704_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_013161.1\|WP_015785171.1\|4368633_4369887_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_013161.1\|WP_015785162.1\|4359330_4360431_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NC_013161.1\|WP_015785168.1\|4366415_4366625_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015785166.1\|4364328_4364595_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NC_013161.1\|WP_015785174.1\|4371935_4372760_-\|DUF3782-domain-containing-protein	unknown	unknown	gnl\|CDD\|372238
NC_013161.1\|WP_015785165.1\|4363677_4364226_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_013161.1\|WP_015785181.1\|4382708_4385138_+\|dynamin-like-GTPase-family-protein	unknown	unknown	gnl\|CDD\|223771
NC_013161.1\|WP_015785176.1\|4374654_4374840_-\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NC_013161.1\|WP_015785167.1\|4364652_4366179_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015785178.1\|4378018_4379812_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NC_013161.1\|WP_012594446.1\|4376696_4377908_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.07056e-56
NC_013161.1\|WP_015785173.1\|4370664_4371939_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.80644e-110
NC_013161.1\|WP_015785164.1\|4362616_4363549_-\|DUF1460-domain-containing-protein	gnl\|CDD\|369314	pfam07313, DUF1460, Protein of unknown function (DUF1460). This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.	1.70966e-63
NC_013161.1\|WP_015785177.1\|4374993_4376304_-\|phytase	gnl\|CDD\|226698	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism].	4.13011e-120
NC_013161.1\|WP_015785169.1\|4366681_4367509_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.47465e-41
NC_013161.1\|WP_015785180.1\|4382183_4382609_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.36075e-12
NC_013161.1\|WP_015785163.1\|4360527_4362273_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	6.81079e-26
NC_013161.1\|WP_015785170.1\|4367663_4368605_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	8.29459e-105
NC_013161.1\|WP_015785175.1\|4373438_4374704_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.27969e-100
NC_013161.1\|WP_015785171.1\|4368633_4369887_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	2.29309e-47
NC_013161.1\|WP_015785167.1\|4364652_4366179_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	2.97025e-50
NC_013161.1\|WP_015785179.1\|4380233_4382183_+\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	0.000144024
NC_013161.1\|WP_015785166.1\|4364328_4364595_+\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	3.74506e-25
NC_013161.1\|WP_015785174.1\|4371935_4372760_-\|DUF3782-domain-containing-protein	gnl\|CDD\|372238	pfam12644, DUF3782, Protein of unknown function (DUF3782). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.	1.23936e-29
NC_013161.1\|WP_015785165.1\|4363677_4364226_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	9.29379e-31
NC_013161.1\|WP_015785181.1\|4382708_4385138_+\|dynamin-like-GTPase-family-protein	gnl\|CDD\|223771	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only].	2.49847e-26
NC_013161.1\|WP_015785176.1\|4374654_4374840_-\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	1.19471e-07
NC_013161.1\|WP_015785162.1\|4359330_4360431_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0

>NC_013161.1|WP_015785171.1|4368633_4369887_-|glycosyltransferase
MKILILSCAFPYPPLEGKTQMRTFSFLKYLNQRHDITFVTQASDEVLEEDIASLKQEIPNCIIFPDVTQETTSPRFLEKAKRLGVFFQQGTPPKLLSHYSLKLQEYLDQEIDSGQFDLLTCEGNNGEIYIRPEWQKKLPTVINIHRSLWGVYKHQRENHSGESGLRNQINLPLLRRYEKHYCSKFSAIVTATQTEQKLLKNLKLETPITVVPNGLDLSVFPKRPANSGGQRIIFIGAMDKPANIDAARFFSLEVFPKIRQRYPESILELVGIRPVHEVLELGEYPGIKVTGPVSSMIEYLHWATVCVIPLRKSMGTKIRTLQALATGTPLVASDYGLEGLSVDGTGVPLCAMRANEIDEYVYAIGRLFEQPKLREKLSINGRTLIENEYTWKRMGERYEQILLTTYNTSHKLSDNSP
>NC_013161.1|WP_015785170.1|4367663_4368605_-|PhzF-family-phenazine-biosynthesis-protein
MNLTQQYKFYTLDVFTDQIFGGNPLAVFPKAQGLTDEQMQKVAAEFNLSETVFVLPPETSKGTRKLRIFTPKVELPFAGHPTVGTAYLLSYLGEIDQPEEPDTDLSIIFEEGVGLVPVTIKIKQGKPVYTELQAAQLPEVKNDAPSIQELAEILGLEITDFREDQYSPQGVSCGVPFLLIPLQNRTALGRINFNRDRWQHILGKAWASAMYVFCDDPETEGTHLRSRMFAPAMGITEDPATGSAATAFGAYLALRHPLTEGTLQWRIEQGLEMGRPSILEVAVEKHQGEIREIRVGGSSVLVSEGTMTIPLVR
>NC_013161.1|WP_015785169.1|4366681_4367509_-|mechanosensitive-ion-channel-family-protein
MDAVPVQVNVVIETLKTQVTGFGLKLIGAIVLWVIGQWLITKGVNLLAKVLKKQNIEPTLIAYVNNFLGIGLKIVLIVAILGYFGIETTSFAALLAAAGVAIGAAWGGLLANFAAGIFLVIFRPFSVGDFVCAGGVTGTVEEIGLFVTSINTIDNVRNIIGNNKIFADNIQNFTANPYRRVDLVAQLNHSVNYGEAINRLKATVSQIPNVIDHPSPEIEILEFNLAGPVLAVRPYCHNDHYWQVYFDTNKAIRETLGDAYPVPEQHYVIRQTSAI
>NC_013161.1|WP_015785168.1|4366415_4366625_+|hypothetical-protein
MNSHDLAKYIEAHEGITKPWLLIQLRLKKIQENRDKMSEQEYLTHIESLHQDLMKLGEWWVGIEDEVFQ
>NC_013161.1|WP_015785167.1|4364652_4366179_-|SagB/ThcOx-family-dehydrogenase
MSKSLTSIATHYHQRTKYHPETIARKSQGLDWSKQPSVFKQYKIGTSYDLTVYLSDKATSDEHTPYWRRLSRFLACSYGLTAKIPTMGEPLYLRAAPSAGGLYPAEVYLISRGTPQLPAGLYHYQPQTHSLIYFWESDVWSNLQEACAWDLDLEDAQLAIITTAIFYRSAWRYEDRAYRRILLDTGHLLGNIELAAAINHYRPHLIGGFSDYIINELLYLDPDQEAGITVISLKDLLNPQQNPSQSFKTTTLPSEIHTDYPSISDGELLYYFHQATEIRISERLPDATLSNEISNLEDKYNFPFCLKVSTKTKPINWGENLLNLEQTILKRRSTRAYTGANLTLEELNSLLNFTYQAQDYEDIGLDADPDYFDLSLIETFIAVSGVNGLEEGCYYYAPKAQELRQIRFKNFRQELHYLCLGQELGRDAAAVIFHTADLEKAVQKYGDRAYRYLHLDAGHLGQRLNLAAIELNLGVSGIGGFFDDQVNEVLGIPSDEAVLYITTLGRPH
>NC_013161.1|WP_015785166.1|4364328_4364595_+|MoaD/ThiS-family-protein
MDHHALNIQITIKLFAAYQDSYGVPELQREFPNQTTVKGVLDSLIHEHPELETWRDVTRFGVNFQFVEADTLLKDGDEVVLIPPVSGG
>NC_013161.1|WP_015785165.1|4363677_4364226_-|universal-stress-protein
MTNQVESRDTLTQPNPEPQVATVPYQKILVAVDYLADTPKVFEEALNLAKLNHSQLMIFYCIQGRIPGSIDLPIYAGMISYGGIYSQEMVELEEKVIEESTEELKAWLQRLTDEATQEGLKAAADYSYGEPGRQICSLAKNWGSDLIVVGRRGRSGLAELFLGSISNYVVHHSPCAVLVVQQ
>NC_013161.1|WP_015785164.1|4362616_4363549_-|DUF1460-domain-containing-protein
MKKILLPVLVPLFILISPQDVLPLQSQDQSLEYVQKRSQNSLAQVKQNSLEESKTKKEFKQIISHLKEQNFSDLSLGQTVQKVAEQFLGAAYIAGLLDKSEQEKLFISLKEFDCVLFVETVLGLSQNISRQETQYENFVKNIQDLRYANGIIDGYCSRLHYFSDWINDNQKRGNVKNITAELGGIKFDKTLTFMSKNRKLYPKLINNQANYQCILEREKQLNQLDLYYIPHNQIKAIYQKLQPGDIIAIATNIDGLDVTHTGLIYRTSEGNIAFIHASPAGQVTIAQDLQTYAQNVKNAVGIIVARPLTK
>NC_013161.1|WP_015785163.1|4360527_4362273_-|iron-uptake-porin
MSRLLNQLVKITPGLLGCLFLVAQSAIASPKTDFETANPETINPDEALGVLRNRPQMDNPMNRTSGQKFNTSASQVTSVSELRDVQPTEWAYEALRSLVERYGCIVGYPDRTFRGNRALSRWEFAAGLNACLNTIERLLQENVAVLREDIEKLKRLAQEFEAELAALGSRVSNLESRVSYLEDHQFSTTTQLKATSIFTWSNAWGERALDYREQDTYNQAIQNRRNTTAKRRLDDNSTLGYRVRLNFNTSFSGKDMLTARLQALTIVNYANPTGTSMARLGHDANNDSNVVIDNLWYRFPIGQFTGYVGGTGLDVDDIFDTGNPYGTSSDTGALSRFMRYDPLTMRGTEGIGAGFAYKFNDMFTVRGLYLTPGGEGNDPSQGRGLFNGSFTAGGQIGFKPTDGLTFNAQFLHKYFRPNGVNVTHGTGSGIASDPFLGAATITDNYGLNGNWRINETFNLTGWVGYALARGQGLDSRGRSRRGLGADIWSWMVGLNVIDLFKEGAVFSVGGGSITNARRVDALTGDLTVPDQDTPYIIEGQYRYPLNKNIDITPGLYVILEPDGNNQNNSIWVGVVRTTFKF
>NC_013161.1|WP_015785162.1|4359330_4360431_+|3-dehydroquinate-synthase
MSIIIPVKLPHTSYNIAIAPGSLSQLGSHLEPLKLGQKILIISNPEIFNYYGDVVVNSLKKSGFEVFTHLIPAGEAYKTLDSIAQVYDTALEHRLERSSTMIALGGGVIGDMTGFAAATWLRGINFVQVPTSLLAMVDASIGGKTGVNHPQGKNLIGAFYQPRLVFIDPSVLKTLPVREFRAGMAEVIKYGIIWDKALFEQLEQAKTLDHLNSLNDELLQTIITRSCQAKVDVVSQDEKESGLRAILNYGHTIGHAIESLTGYETINHGEAVAMGMVAAGKIAIKLSLWTQEETIRQDQLIDKVGLISTIPKTLDIDQVIESLQSDKKVKSGKVRFILPTSIGKVIISDQVSSEIIKSVMIHQVNK
>NC_013161.1|WP_015785173.1|4370664_4371939_+|insulinase-family-protein
MVQLIDRFKTVPYPANLIQLDHGLTLIHQYQPATPVAVVDVWVKAGTIVEPDNWSGMAHFLEHMIFKGSKRVLPGIFDQMIENSGGMANAATSYDYAHFFLTTAAEYLPDTLPYLAEILLHAEIPDEEFVRERDVVLEEIRSCYDDPDWLAFQSLCESLYQRHPYGRSILGHESQLLQHSPHQMRCFHRTHYQPDKMTVVVVGNLQEEVVLKLVNQEFGEFSAPSECPPIQTLAEPPLLEVRRTQMYLPRLEQARLLMGWIGPGVDCLEDGFGLDLISAILGVGRSSRLVQQLREQKHLVLDVESSFSLQRDSSLFTIAAWLDPQDLEIVEQLILDNLMELQVKPVTEEELERGKRLLCHDYIFSTETPGQLAGLYGYYQTIASAEVSLSYPRIIEQFSAKDLQRIADQYLSPERYAITVMQPC
>NC_013161.1|WP_015785174.1|4371935_4372760_-|DUF3782-domain-containing-protein
MTNSADIKALIREQLPSILAEDSSIRDFILRTVSDYYSPKQETDQKFEEFKERVDRILDQLERDREEQARKWDENTHKWDENTRKWDRILDQLERDREEQARKWDENNRRLDNFIHEQNQKWNQQYQQNQETLEEIKKMNRQYDSTIGALGSRWGLFSEASFRNALAGILKDSFGVEVVNINDYDPDGIVFGRPDQVEIDVIIKNGLVIVCEIKSSMSKSDIYTFGRKVEFYQQKYQRSVNRKIVISPMIAPNALPVAESLGIEVYSYADSVSI
>NC_013161.1|WP_015785175.1|4373438_4374704_+|insulinase-family-protein
MNRYQIQGIGEKQAVHRLRLDNGVVLIVGENPTADLIAGRIFLKNAGSLWESKEKAGLSNLLATVITKGTERLSSGEIAEAVESIGASLGANAASDYFMMGIKTVSSDFAFILALMGEILRSPTFPEAEVALEKHLIIQSIRSQQEQPFNVAFNQLRGLMYQEHPYGFSILGTEETVSQLCRDDLINYHNYHFRPDNLIISLSGRITLHDAISLVEKTLGDWEVPSHTLTPLSLPPLISSPVEKITFQETQQSIVMLGYLTGGVKSPEYPVLKLLSTYLGNGLSSRLFVELREKRGLAYDVSALYPTRLEPSQFVVYMGTAPDNTSIAIEGLQQECERLCYQELTPEELQGAKNKLLGQYALGKQTNSEIAQLYGWYETLGLGVEFDQEFQAMITEVTSQIAQSVAKNYLLSPYLSVVGPN
>NC_013161.1|WP_015785176.1|4374654_4374840_-|DUF4926-domain-containing-protein
MKLLESVTLLKKISKLNLYWGQVGTIVEEYQPQVFEVELSDTLFRINWVPQRKDREKVNNF
>NC_013161.1|WP_015785177.1|4374993_4376304_-|phytase
MNKVINSLAVACFSFAFSHQAAIAIQLTTPTAETPPVLDELVDPPGDADDPAIWLHPNDPSQSLVLGTLKNAGLGVYDLGGNLLQLIQPNSIRYNNVDLLYGFSLGGNSVDLAIASDRQNDILAIFKIDPMTRLLESIVSNNIGTIFTPVGQVSNGTTTAYGLATYTDLSTGKNYVFVSQRETGNVAQLELFDDGTGKVNYTQVRSLTLPIPPGGVLEDAQVEGMVADRELGYVYVGQENRGIWKFSASPNGSTLGQLIDAVKPEGTHLEADVEGLTIYYSDNGTGYLLASSQGDNTFAIYDRLGNNNYLGSFSIVASGGIDSVEESDGADVINVPLGSQFPFGLFVTQDGSNDPPELFFDPDDQEFVNVSSNFKFVPWETIANAFAPNPLLINTSSFDPRNPSSITVPEPTLSIWGLFVMLGVGYLKRGKNHPFR
>NC_013161.1|WP_012594446.1|4376696_4377908_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKQRLKFRIYPTTSQKTALAKLFGCTRVVWNDALAHCQQEYREGRKKPNNTQLSSRLTQLKKTEEKIWLGEVSAIPLQQSLRDLEVAYSNFFKSCQGKRKGKKVKSPKFKSRKFRQSARFTDNGFKINQQNVYLAKIGKLKIVWSRELPSKPSSVTVIKDSANRYFLSFVCDVNSSPLAPNNNSIGIDLGIIDFATLNNGEKIKSPKPLKHNLKRLRRLQKNLSRKQKGSKRHEVARLKVAKLHAKITDIRTDFLHQLSTKLIRENQTIALEDLNVSGMVKNRKLSRAISDLGWRSFRTMLETKGEIYGRDVRIINRWEATSQTCSSCGFKGGKKELNIREWTCLNCGAVHDRDVNAATNILKVAGGHPETKNGRGEKIRLSNKKAHLSEASTTPQYKQLSLF
>NC_013161.1|WP_015785178.1|4378018_4379812_-|translational-GTPase-TypA
MSLPIRNVAIIAHVDHGKTTLVDALLKQSGIFREGEDIPDCVMDSNTLERERGITILSKNTAVRYNDTLINIVDTPGHADFGGEVERVLGMVDGCILIVDANEGPMPQTRFVLKKALEKGLRPIVVVNKIDRPQADPNIAVDKVFDLFVELGADDDQCDFTTLFASGLSGYAKETLEEEGVDMKPLFEAILHHVPPPAGDVNKPLQLQVTTLDYSDYLGRIIIGRIHNGTIKAGQQAALMKEDGSIVRGKISKLLGFEGLQRVEMQEASAGYIVAVAGFADANIGETLTCPNEPQALPLIKVDEPTLQMTFSVNDSPFAGQEGKFVTSRQIRDRLHRELETNVALRVEDTDSPDKFAVSGRGELHLGILIETMRREGYEFQVSQPQVIYREVNGQPCEPYEYLVLDVPEEAVGASIERLGQRKGEMQDMQTGTNGRTQLEFVVPARGLIGFRGEFIRLSRGEGIMNHSFLEYRPFSGELATRYNGVITSFEEGVATFYALQNAEDRGVFFITPGTKVYKGMIIGESNRPQDVELNICKTKQLTNHRSATGDELVQLQAPEEMSLERALEYIGPDELVEVTPQSIRLRKMKAQKLVKR
>NC_013161.1|WP_015785179.1|4380233_4382183_+|hypothetical-protein
MAVILPLIALVLLLLIFYKKTNYFRHSLLSSSICWGLLLTIITEVLSLIQSLVFSYLSLGWGFINILLIFIYLNIKLTKHKKKIDLKKIFYKLSNFWIIIVLGVTFVVTIVGLTALISPPNNRDSMDYHMARVAYWIQNHSLNHYPTHYLAQLYQGPLAELIIVNLQILSGGDYLANLVQWLSLIGSLLGVSLIAKLLGADLWGQLFSAVVAATIPMGILQGSSTQNDYVASFWLVCLTYFVLLNVKGQRNWSNFLQLSFSLGLAILTKGTSYIYALPLIIWFLLSELKYLKWQIWKPTLMLGIVVFIINLGHYSRNYLLFGKIIFTGNKYTNDAFSLPIFISNFIRNIALHLRTPVQSFNFLLQKVVSLIHQILGIDISDIRTTWSGQEFQLYFPSGQEAVSSLLHENLAANTLHLLLIVGAIFILFFQGKYKKDKLLFYYCIILISMFFLFCLLLKWQPWNSRLHLPIFVLFSPFSGSVFSRFKSRSFITFLSIFLIISSFPWVFFNTSRPIISNLKTESILTTSRTNQYFNNWPTIKNPYLKATGYINSQECSKIGLTRDFQVWQYPLFIFIKPTTSNPLEIRNINVTNISSEKMKVEPYKHFIPCAIISLNFPDQKKKISKEINTNTGTYSIKFSSRLINVFMKQ
>NC_013161.1|WP_015785180.1|4382183_4382609_-|GNAT-family-N-acetyltransferase
MKDKVKIITQVNDSQIKDLYQLYQLSWWSQGRMLDGIKIMLENSDLIIGLSHCETEKLIGFARVLTDYVYRATIWDVMVDPSYQKKGLGSLLMESIMNHQSLRNVECFSLMCLPEAIPFYEKFEFATYHKPIEIMIRSRHS
>NC_013161.1|WP_015785181.1|4382708_4385138_+|dynamin-like-GTPase-family-protein
MTELVPQCQNLSTQVNSLLELLHQEPSLRPQYDTTAIAASLKKAISPQFEIVFAGAFSAGKSMLINALLERELLYSAEGHATGTECYIHYADVDQERVVLTFLSEAEIGEQVKALCDRLQIPAYTNINQPETIKFLTEQSHEIIKHEGGENRSDKAKQAKALLLLLEGFTHNRAHIKTLNYATYSMEQFNFSNLAEAATYARRGSNSSVLKKVEYYCHHSLLKDGNILVDTPGIDAPVKKDAELAYAKIQHPDTSAVVCVLKPASAGDMAIEETELLEKMRSNLGIRDRVFYVFNRIDQTWYAPQLRQRLDNLIQSEFRDISRVYKTSALLGFYASQIKHTNGSNRFGLDTIFAESVKQIGGEEENPQFVSEFNNYCANSGKLTRTDFKVSVHGYETPNQNYVRILNEWEQPLINQLIADSGIEDFRNAITRYLTEEKRPQLFAILADDLQPLCINLRQYYLDNYRELERQPRDIEAMKAQELTRLHQELKEVGIEFKNQIAHEVNEVIVKADAAFEQDFKKLQSRMVEYLDELVRNFSVQNANRRATLSHPRNQTVPLIAILVEALYYLANELEDVLIEETNRLIMAFYQRLLDRIRQSECYRKLFRLLGNDGGVEDQLKQVEKSVIDALVNEAKIECDRYVRESPRFYDEGQFSIYQFRQTLEKTTQGYDCSSIIEAEPAIRQLLKLDFDPKVSKTIQKDFRSAINLTLKTHLLPMADQQAELIFQQHDKAREYLGQSLDKEAQEKIERNEKSQSQIKDKIEEYNQAVSGINGCLQAMQVYERQLPLISQEDLKSKEILVEVCDENN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013161_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013161_13

4372439-4372550

TypeV-U4

Consensus_repeat	Method
TATTTTCATCCCATTTACGCGCTTGTTCTTCCCTATC	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_013161_13

>merge|NC_013161|13|4372439-4372550|CRISPRCasFinder
TATTTTCATCCCATTTACGCGCTTGTTCTTCCCTATCGCGCTCTAATTGGTCTAAAATCCGATCCCATTTACGGGTGTTTTCATCCCATTTATGGGTATTTTCATCCCATTT

>NC_013161|13|10|4372439-4372550|CRISPRCasFinder
TATTTTCATCCCATTTACGCGCTTGTTCTTCCCTATC	GCGCTCTAATTGGTCTAAAATCCGATCCCATTTACGGG
TGTTTTCATCCCATTTATGGGTATTTTCATCCCATTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013161.1\|WP_015785178.1\|4378018_4379812_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NC_013161.1\|WP_012594446.1\|4376696_4377908_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	c2c9_V-U4	-	gnl\|CDD\|223747
NC_013161.1\|WP_015785175.1\|4373438_4374704_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_013161.1\|WP_015785164.1\|4362616_4363549_-\|DUF1460-domain-containing-protein	unknown	unknown	gnl\|CDD\|369314
NC_013161.1\|WP_015785177.1\|4374993_4376304_-\|phytase	unknown	unknown	gnl\|CDD\|226698
NC_013161.1\|WP_015785183.1\|4385876_4386140_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015785172.1\|4369929_4370280_-\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015785169.1\|4366681_4367509_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_013161.1\|WP_015785180.1\|4382183_4382609_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_013161.1\|WP_015785170.1\|4367663_4368605_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_013161.1\|WP_015785171.1\|4368633_4369887_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|274425
NC_013161.1\|WP_015785182.1\|4385376_4385715_+\|KGK-family-protein	unknown	unknown	gnl\|CDD\|370166
NC_013161.1\|WP_015785173.1\|4370664_4371939_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_013161.1\|WP_015785168.1\|4366415_4366625_+\|hypothetical-protein	unknown	unknown	unknown
NC_013161.1\|WP_015785166.1\|4364328_4364595_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NC_013161.1\|WP_015785179.1\|4380233_4382183_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
NC_013161.1\|WP_015785165.1\|4363677_4364226_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_013161.1\|WP_015785181.1\|4382708_4385138_+\|dynamin-like-GTPase-family-protein	unknown	unknown	gnl\|CDD\|223771
NC_013161.1\|WP_015785176.1\|4374654_4374840_-\|DUF4926-domain-containing-protein	unknown	unknown	gnl\|CDD\|379816
NC_013161.1\|WP_015785167.1\|4364652_4366179_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318

Protein	Function_ID	Function_description	E-value
NC_013161.1\|WP_015785178.1\|4378018_4379812_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NC_013161.1\|WP_012594446.1\|4376696_4377908_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.07056e-56
NC_013161.1\|WP_015785175.1\|4373438_4374704_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.27969e-100
NC_013161.1\|WP_015785164.1\|4362616_4363549_-\|DUF1460-domain-containing-protein	gnl\|CDD\|369314	pfam07313, DUF1460, Protein of unknown function (DUF1460). This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.	1.70966e-63
NC_013161.1\|WP_015785177.1\|4374993_4376304_-\|phytase	gnl\|CDD\|226698	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism].	4.13011e-120
NC_013161.1\|WP_015785169.1\|4366681_4367509_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.47465e-41
NC_013161.1\|WP_015785180.1\|4382183_4382609_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.36075e-12
NC_013161.1\|WP_015785170.1\|4367663_4368605_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	8.29459e-105
NC_013161.1\|WP_015785171.1\|4368633_4369887_-\|glycosyltransferase	gnl\|CDD\|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	2.29309e-47
NC_013161.1\|WP_015785182.1\|4385376_4385715_+\|KGK-family-protein	gnl\|CDD\|370166	pfam08872, KGK, KGK domain. This presumed domain is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.	7.1885e-24
NC_013161.1\|WP_015785167.1\|4364652_4366179_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	2.97025e-50
NC_013161.1\|WP_015785179.1\|4380233_4382183_+\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	0.000144024
NC_013161.1\|WP_015785166.1\|4364328_4364595_+\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	3.74506e-25
NC_013161.1\|WP_015785165.1\|4363677_4364226_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	9.29379e-31
NC_013161.1\|WP_015785181.1\|4382708_4385138_+\|dynamin-like-GTPase-family-protein	gnl\|CDD\|223771	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only].	2.49847e-26
NC_013161.1\|WP_015785176.1\|4374654_4374840_-\|DUF4926-domain-containing-protein	gnl\|CDD\|379816	pfam16277, DUF4926, Domain of unknown function (DUF4926). This family consists of uncharacterized proteins around 70 residues in length and is mainly found in various Caulobacter, Microcystis and Cyanothece species. The function of this family is unknown.	1.19471e-07
NC_013161.1\|WP_015785173.1\|4370664_4371939_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.80644e-110

>NC_013161.1|WP_015785173.1|4370664_4371939_+|insulinase-family-protein
MVQLIDRFKTVPYPANLIQLDHGLTLIHQYQPATPVAVVDVWVKAGTIVEPDNWSGMAHFLEHMIFKGSKRVLPGIFDQMIENSGGMANAATSYDYAHFFLTTAAEYLPDTLPYLAEILLHAEIPDEEFVRERDVVLEEIRSCYDDPDWLAFQSLCESLYQRHPYGRSILGHESQLLQHSPHQMRCFHRTHYQPDKMTVVVVGNLQEEVVLKLVNQEFGEFSAPSECPPIQTLAEPPLLEVRRTQMYLPRLEQARLLMGWIGPGVDCLEDGFGLDLISAILGVGRSSRLVQQLREQKHLVLDVESSFSLQRDSSLFTIAAWLDPQDLEIVEQLILDNLMELQVKPVTEEELERGKRLLCHDYIFSTETPGQLAGLYGYYQTIASAEVSLSYPRIIEQFSAKDLQRIADQYLSPERYAITVMQPC
>NC_013161.1|WP_015785172.1|4369929_4370280_-|hypothetical-protein
MTEREFQTIIDKLDSLENKVIKVDQDNQLLSEKLELYREEAKLEAKLLAEKLELYQKVSQEKLEAFQEANKQQIEANRQQIQAFQEANKQQLNVSLGVLVTAAVTILASVILGMSH
>NC_013161.1|WP_015785171.1|4368633_4369887_-|glycosyltransferase
MKILILSCAFPYPPLEGKTQMRTFSFLKYLNQRHDITFVTQASDEVLEEDIASLKQEIPNCIIFPDVTQETTSPRFLEKAKRLGVFFQQGTPPKLLSHYSLKLQEYLDQEIDSGQFDLLTCEGNNGEIYIRPEWQKKLPTVINIHRSLWGVYKHQRENHSGESGLRNQINLPLLRRYEKHYCSKFSAIVTATQTEQKLLKNLKLETPITVVPNGLDLSVFPKRPANSGGQRIIFIGAMDKPANIDAARFFSLEVFPKIRQRYPESILELVGIRPVHEVLELGEYPGIKVTGPVSSMIEYLHWATVCVIPLRKSMGTKIRTLQALATGTPLVASDYGLEGLSVDGTGVPLCAMRANEIDEYVYAIGRLFEQPKLREKLSINGRTLIENEYTWKRMGERYEQILLTTYNTSHKLSDNSP
>NC_013161.1|WP_015785170.1|4367663_4368605_-|PhzF-family-phenazine-biosynthesis-protein
MNLTQQYKFYTLDVFTDQIFGGNPLAVFPKAQGLTDEQMQKVAAEFNLSETVFVLPPETSKGTRKLRIFTPKVELPFAGHPTVGTAYLLSYLGEIDQPEEPDTDLSIIFEEGVGLVPVTIKIKQGKPVYTELQAAQLPEVKNDAPSIQELAEILGLEITDFREDQYSPQGVSCGVPFLLIPLQNRTALGRINFNRDRWQHILGKAWASAMYVFCDDPETEGTHLRSRMFAPAMGITEDPATGSAATAFGAYLALRHPLTEGTLQWRIEQGLEMGRPSILEVAVEKHQGEIREIRVGGSSVLVSEGTMTIPLVR
>NC_013161.1|WP_015785169.1|4366681_4367509_-|mechanosensitive-ion-channel-family-protein
MDAVPVQVNVVIETLKTQVTGFGLKLIGAIVLWVIGQWLITKGVNLLAKVLKKQNIEPTLIAYVNNFLGIGLKIVLIVAILGYFGIETTSFAALLAAAGVAIGAAWGGLLANFAAGIFLVIFRPFSVGDFVCAGGVTGTVEEIGLFVTSINTIDNVRNIIGNNKIFADNIQNFTANPYRRVDLVAQLNHSVNYGEAINRLKATVSQIPNVIDHPSPEIEILEFNLAGPVLAVRPYCHNDHYWQVYFDTNKAIRETLGDAYPVPEQHYVIRQTSAI
>NC_013161.1|WP_015785168.1|4366415_4366625_+|hypothetical-protein
MNSHDLAKYIEAHEGITKPWLLIQLRLKKIQENRDKMSEQEYLTHIESLHQDLMKLGEWWVGIEDEVFQ
>NC_013161.1|WP_015785167.1|4364652_4366179_-|SagB/ThcOx-family-dehydrogenase
MSKSLTSIATHYHQRTKYHPETIARKSQGLDWSKQPSVFKQYKIGTSYDLTVYLSDKATSDEHTPYWRRLSRFLACSYGLTAKIPTMGEPLYLRAAPSAGGLYPAEVYLISRGTPQLPAGLYHYQPQTHSLIYFWESDVWSNLQEACAWDLDLEDAQLAIITTAIFYRSAWRYEDRAYRRILLDTGHLLGNIELAAAINHYRPHLIGGFSDYIINELLYLDPDQEAGITVISLKDLLNPQQNPSQSFKTTTLPSEIHTDYPSISDGELLYYFHQATEIRISERLPDATLSNEISNLEDKYNFPFCLKVSTKTKPINWGENLLNLEQTILKRRSTRAYTGANLTLEELNSLLNFTYQAQDYEDIGLDADPDYFDLSLIETFIAVSGVNGLEEGCYYYAPKAQELRQIRFKNFRQELHYLCLGQELGRDAAAVIFHTADLEKAVQKYGDRAYRYLHLDAGHLGQRLNLAAIELNLGVSGIGGFFDDQVNEVLGIPSDEAVLYITTLGRPH
>NC_013161.1|WP_015785166.1|4364328_4364595_+|MoaD/ThiS-family-protein
MDHHALNIQITIKLFAAYQDSYGVPELQREFPNQTTVKGVLDSLIHEHPELETWRDVTRFGVNFQFVEADTLLKDGDEVVLIPPVSGG
>NC_013161.1|WP_015785165.1|4363677_4364226_-|universal-stress-protein
MTNQVESRDTLTQPNPEPQVATVPYQKILVAVDYLADTPKVFEEALNLAKLNHSQLMIFYCIQGRIPGSIDLPIYAGMISYGGIYSQEMVELEEKVIEESTEELKAWLQRLTDEATQEGLKAAADYSYGEPGRQICSLAKNWGSDLIVVGRRGRSGLAELFLGSISNYVVHHSPCAVLVVQQ
>NC_013161.1|WP_015785164.1|4362616_4363549_-|DUF1460-domain-containing-protein
MKKILLPVLVPLFILISPQDVLPLQSQDQSLEYVQKRSQNSLAQVKQNSLEESKTKKEFKQIISHLKEQNFSDLSLGQTVQKVAEQFLGAAYIAGLLDKSEQEKLFISLKEFDCVLFVETVLGLSQNISRQETQYENFVKNIQDLRYANGIIDGYCSRLHYFSDWINDNQKRGNVKNITAELGGIKFDKTLTFMSKNRKLYPKLINNQANYQCILEREKQLNQLDLYYIPHNQIKAIYQKLQPGDIIAIATNIDGLDVTHTGLIYRTSEGNIAFIHASPAGQVTIAQDLQTYAQNVKNAVGIIVARPLTK
>NC_013161.1|WP_015785175.1|4373438_4374704_+|insulinase-family-protein
MNRYQIQGIGEKQAVHRLRLDNGVVLIVGENPTADLIAGRIFLKNAGSLWESKEKAGLSNLLATVITKGTERLSSGEIAEAVESIGASLGANAASDYFMMGIKTVSSDFAFILALMGEILRSPTFPEAEVALEKHLIIQSIRSQQEQPFNVAFNQLRGLMYQEHPYGFSILGTEETVSQLCRDDLINYHNYHFRPDNLIISLSGRITLHDAISLVEKTLGDWEVPSHTLTPLSLPPLISSPVEKITFQETQQSIVMLGYLTGGVKSPEYPVLKLLSTYLGNGLSSRLFVELREKRGLAYDVSALYPTRLEPSQFVVYMGTAPDNTSIAIEGLQQECERLCYQELTPEELQGAKNKLLGQYALGKQTNSEIAQLYGWYETLGLGVEFDQEFQAMITEVTSQIAQSVAKNYLLSPYLSVVGPN
>NC_013161.1|WP_015785176.1|4374654_4374840_-|DUF4926-domain-containing-protein
MKLLESVTLLKKISKLNLYWGQVGTIVEEYQPQVFEVELSDTLFRINWVPQRKDREKVNNF
>NC_013161.1|WP_015785177.1|4374993_4376304_-|phytase
MNKVINSLAVACFSFAFSHQAAIAIQLTTPTAETPPVLDELVDPPGDADDPAIWLHPNDPSQSLVLGTLKNAGLGVYDLGGNLLQLIQPNSIRYNNVDLLYGFSLGGNSVDLAIASDRQNDILAIFKIDPMTRLLESIVSNNIGTIFTPVGQVSNGTTTAYGLATYTDLSTGKNYVFVSQRETGNVAQLELFDDGTGKVNYTQVRSLTLPIPPGGVLEDAQVEGMVADRELGYVYVGQENRGIWKFSASPNGSTLGQLIDAVKPEGTHLEADVEGLTIYYSDNGTGYLLASSQGDNTFAIYDRLGNNNYLGSFSIVASGGIDSVEESDGADVINVPLGSQFPFGLFVTQDGSNDPPELFFDPDDQEFVNVSSNFKFVPWETIANAFAPNPLLINTSSFDPRNPSSITVPEPTLSIWGLFVMLGVGYLKRGKNHPFR
>NC_013161.1|WP_012594446.1|4376696_4377908_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MKQRLKFRIYPTTSQKTALAKLFGCTRVVWNDALAHCQQEYREGRKKPNNTQLSSRLTQLKKTEEKIWLGEVSAIPLQQSLRDLEVAYSNFFKSCQGKRKGKKVKSPKFKSRKFRQSARFTDNGFKINQQNVYLAKIGKLKIVWSRELPSKPSSVTVIKDSANRYFLSFVCDVNSSPLAPNNNSIGIDLGIIDFATLNNGEKIKSPKPLKHNLKRLRRLQKNLSRKQKGSKRHEVARLKVAKLHAKITDIRTDFLHQLSTKLIRENQTIALEDLNVSGMVKNRKLSRAISDLGWRSFRTMLETKGEIYGRDVRIINRWEATSQTCSSCGFKGGKKELNIREWTCLNCGAVHDRDVNAATNILKVAGGHPETKNGRGEKIRLSNKKAHLSEASTTPQYKQLSLF
>NC_013161.1|WP_015785178.1|4378018_4379812_-|translational-GTPase-TypA
MSLPIRNVAIIAHVDHGKTTLVDALLKQSGIFREGEDIPDCVMDSNTLERERGITILSKNTAVRYNDTLINIVDTPGHADFGGEVERVLGMVDGCILIVDANEGPMPQTRFVLKKALEKGLRPIVVVNKIDRPQADPNIAVDKVFDLFVELGADDDQCDFTTLFASGLSGYAKETLEEEGVDMKPLFEAILHHVPPPAGDVNKPLQLQVTTLDYSDYLGRIIIGRIHNGTIKAGQQAALMKEDGSIVRGKISKLLGFEGLQRVEMQEASAGYIVAVAGFADANIGETLTCPNEPQALPLIKVDEPTLQMTFSVNDSPFAGQEGKFVTSRQIRDRLHRELETNVALRVEDTDSPDKFAVSGRGELHLGILIETMRREGYEFQVSQPQVIYREVNGQPCEPYEYLVLDVPEEAVGASIERLGQRKGEMQDMQTGTNGRTQLEFVVPARGLIGFRGEFIRLSRGEGIMNHSFLEYRPFSGELATRYNGVITSFEEGVATFYALQNAEDRGVFFITPGTKVYKGMIIGESNRPQDVELNICKTKQLTNHRSATGDELVQLQAPEEMSLERALEYIGPDELVEVTPQSIRLRKMKAQKLVKR
>NC_013161.1|WP_015785179.1|4380233_4382183_+|hypothetical-protein
MAVILPLIALVLLLLIFYKKTNYFRHSLLSSSICWGLLLTIITEVLSLIQSLVFSYLSLGWGFINILLIFIYLNIKLTKHKKKIDLKKIFYKLSNFWIIIVLGVTFVVTIVGLTALISPPNNRDSMDYHMARVAYWIQNHSLNHYPTHYLAQLYQGPLAELIIVNLQILSGGDYLANLVQWLSLIGSLLGVSLIAKLLGADLWGQLFSAVVAATIPMGILQGSSTQNDYVASFWLVCLTYFVLLNVKGQRNWSNFLQLSFSLGLAILTKGTSYIYALPLIIWFLLSELKYLKWQIWKPTLMLGIVVFIINLGHYSRNYLLFGKIIFTGNKYTNDAFSLPIFISNFIRNIALHLRTPVQSFNFLLQKVVSLIHQILGIDISDIRTTWSGQEFQLYFPSGQEAVSSLLHENLAANTLHLLLIVGAIFILFFQGKYKKDKLLFYYCIILISMFFLFCLLLKWQPWNSRLHLPIFVLFSPFSGSVFSRFKSRSFITFLSIFLIISSFPWVFFNTSRPIISNLKTESILTTSRTNQYFNNWPTIKNPYLKATGYINSQECSKIGLTRDFQVWQYPLFIFIKPTTSNPLEIRNINVTNISSEKMKVEPYKHFIPCAIISLNFPDQKKKISKEINTNTGTYSIKFSSRLINVFMKQ
>NC_013161.1|WP_015785180.1|4382183_4382609_-|GNAT-family-N-acetyltransferase
MKDKVKIITQVNDSQIKDLYQLYQLSWWSQGRMLDGIKIMLENSDLIIGLSHCETEKLIGFARVLTDYVYRATIWDVMVDPSYQKKGLGSLLMESIMNHQSLRNVECFSLMCLPEAIPFYEKFEFATYHKPIEIMIRSRHS
>NC_013161.1|WP_015785181.1|4382708_4385138_+|dynamin-like-GTPase-family-protein
MTELVPQCQNLSTQVNSLLELLHQEPSLRPQYDTTAIAASLKKAISPQFEIVFAGAFSAGKSMLINALLERELLYSAEGHATGTECYIHYADVDQERVVLTFLSEAEIGEQVKALCDRLQIPAYTNINQPETIKFLTEQSHEIIKHEGGENRSDKAKQAKALLLLLEGFTHNRAHIKTLNYATYSMEQFNFSNLAEAATYARRGSNSSVLKKVEYYCHHSLLKDGNILVDTPGIDAPVKKDAELAYAKIQHPDTSAVVCVLKPASAGDMAIEETELLEKMRSNLGIRDRVFYVFNRIDQTWYAPQLRQRLDNLIQSEFRDISRVYKTSALLGFYASQIKHTNGSNRFGLDTIFAESVKQIGGEEENPQFVSEFNNYCANSGKLTRTDFKVSVHGYETPNQNYVRILNEWEQPLINQLIADSGIEDFRNAITRYLTEEKRPQLFAILADDLQPLCINLRQYYLDNYRELERQPRDIEAMKAQELTRLHQELKEVGIEFKNQIAHEVNEVIVKADAAFEQDFKKLQSRMVEYLDELVRNFSVQNANRRATLSHPRNQTVPLIAILVEALYYLANELEDVLIEETNRLIMAFYQRLLDRIRQSECYRKLFRLLGNDGGVEDQLKQVEKSVIDALVNEAKIECDRYVRESPRFYDEGQFSIYQFRQTLEKTTQGYDCSSIIEAEPAIRQLLKLDFDPKVSKTIQKDFRSAINLTLKTHLLPMADQQAELIFQQHDKAREYLGQSLDKEAQEKIERNEKSQSQIKDKIEEYNQAVSGINGCLQAMQVYERQLPLISQEDLKSKEILVEVCDENN
>NC_013161.1|WP_015785182.1|4385376_4385715_+|KGK-family-protein
MSEDKLFEINEYLEGDDDVIAFRDSSTYKISKLKTFLIEKIKSIRYKVGMSWNDSIFTSYGRECEILKVGSGGWIKGQLKFRMILEFIPDEPELKEPESPLDEIRKKISEMG
>NC_013161.1|WP_015785183.1|4385876_4386140_+|hypothetical-protein
MTEQEQLTRILTLVELTNSRLDKLDSDIKETNKRIEDEVKRWDERFFQLVKEQGQTARTIIIAAASVVVLSPVLGAIADVFTHFVSK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013161_7	7.1\|2251736\|30\|NC_013161\|CRT	2251736-2251765	30	NC_013161.1	2251700-2251729	2	0.933

1. spacer 7.1|2251736|30|NC_013161|CRT matches to position: 2251700-2251729, mismatch: 2, identity: 0.933

gcggcaaagacggcggtaaagacgacggca	CRISPR spacer
gcggcaaagatggcggtaaagacggcggca	Protospacer
**********.*************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	187386-187416	6	0.806
NC_013161_5	5.1\|1453405\|27\|NC_013161\|CRT	1453405-1453431	27	MH552500	CrAssphage sp. isolate ctcc615, complete genome	87048-87074	6	0.778
NC_013161_2	2.1\|603742\|32\|NC_013161\|PILER-CR	603742-603773	32	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	201329-201360	7	0.781
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP025884	Escherichia coli strain 503440 plasmid p503440_78, complete sequence	55428-55458	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP025893	Escherichia coli strain 503025 plasmid p503025_105, complete sequence	23191-23221	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP025893	Escherichia coli strain 503025 plasmid p503025_105, complete sequence	103281-103311	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP025866	Escherichia coli strain 504211 plasmid p504211_78, complete sequence	10990-11020	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP025872	Escherichia coli strain 503829 plasmid p503829_77, complete sequence	17867-17897	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP025914	Escherichia coli strain 203740 plasmid p203740_80, complete sequence	70589-70619	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP024231	Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed3, complete sequence	895-925	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP006002	Escherichia coli B7A plasmid pEB4, complete sequence	18461-18491	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	CP025899	Escherichia coli strain 500465 plasmid p500465_77, complete sequence	70584-70614	7	0.774
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	LN908839	Escherichia coli plasmid pCss_E1189	19763-19793	7	0.774
NC_013161_7	7.1\|2251736\|30\|NC_013161\|CRT	2251736-2251765	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	82745-82774	7	0.767
NC_013161_12	12.1\|4370035\|27\|NC_013161\|CRISPRCasFinder	4370035-4370061	27	NZ_LT991956	Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2	124548-124574	7	0.741
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	351559-351589	8	0.742
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	102927-102957	8	0.742
NC_013161_4	4.4\|910597\|31\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910597-910627	31	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	40695-40725	8	0.742
NC_013161_4	4.5\|910665\|33\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	910665-910697	33	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	309413-309445	8	0.758
NC_013161_6	6.2\|2228863\|34\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	2228863-2228896	34	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	300312-300345	8	0.765
NC_013161_7	7.1\|2251736\|30\|NC_013161\|CRT	2251736-2251765	30	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	546141-546170	8	0.733
NC_013161_7	7.1\|2251736\|30\|NC_013161\|CRT	2251736-2251765	30	MT857002	Salmonella phage pSal-SNUABM-02, complete genome	97268-97297	8	0.733
NC_013161_1	1.12\|513405\|35\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	513405-513439	35	MN693940	Marine virus AFVG_250M588, complete genome	21666-21700	9	0.743
NC_013161_8	8.3\|2288690\|34\|NC_013161\|PILER-CR,CRISPRCasFinder,CRT	2288690-2288723	34	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	298720-298753	11	0.676

1. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

tcatcaattccgttgctatttttgtctttat-	CRISPR spacer
tcatcattttcgttgctattttt-tcaacatt	Protospacer
****** **.************* **  .**

2. spacer 5.1|1453405|27|NC_013161|CRT matches to MH552500 (CrAssphage sp. isolate ctcc615, complete genome) position: , mismatch: 6, identity: 0.778

gcagatgttaaggaattaaacggactt	CRISPR spacer
ccagatgttaaagaattaaacgatata	Protospacer
 **********.**********.  *

3. spacer 2.1|603742|32|NC_013161|PILER-CR matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cttgatgaacagcgcaataccc--tgatttattg	CRISPR spacer
attgatgaatagcgcaattccctgtgccttat--	Protospacer
 ********.******** ***  ** .****

4. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025884 (Escherichia coli strain 503440 plasmid p503440_78, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

5. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025893 (Escherichia coli strain 503025 plasmid p503025_105, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

6. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025893 (Escherichia coli strain 503025 plasmid p503025_105, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

7. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025866 (Escherichia coli strain 504211 plasmid p504211_78, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

8. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025872 (Escherichia coli strain 503829 plasmid p503829_77, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

9. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025914 (Escherichia coli strain 203740 plasmid p203740_80, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

10. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024231 (Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

11. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006002 (Escherichia coli B7A plasmid pEB4, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

12. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to CP025899 (Escherichia coli strain 500465 plasmid p500465_77, complete sequence) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

13. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to LN908839 (Escherichia coli plasmid pCss_E1189) position: , mismatch: 7, identity: 0.774

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
ccataaaatccgttgctatttttgaggttct	Protospacer
.*** ** ****************   ** *

14. spacer 7.1|2251736|30|NC_013161|CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gcggcaaagacggcggtaaagacgacggca	CRISPR spacer
tccgcaaagacggcggagaagacgacgatc	Protospacer
 * ************* .*********..

15. spacer 12.1|4370035|27|NC_013161|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 7, identity: 0.741

ttgtatttgttgccgattagcctctat	CRISPR spacer
gctgatttgttgccgatcagcctctgg	Protospacer
 .  *************.*******.

16. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 8, identity: 0.742

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
tcatcattttcgttgctattttttcaacaat	Protospacer
****** **.************* .  . **

17. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.742

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
tcatcattttcgttgctattttttcaacaat	Protospacer
****** **.************* .  . **

18. spacer 4.4|910597|31|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.742

tcatcaattccgttgctatttttgtctttat	CRISPR spacer
tcatcattttcgttgctattttttcaacaat	Protospacer
****** **.************* .  . **

19. spacer 4.5|910665|33|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

attttgggctgcacgcagatcgaggcaataacg	CRISPR spacer
attttgggctgcacggagatcgagctgctcatt	Protospacer
*************** ******** .. * *.

20. spacer 6.2|2228863|34|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 8, identity: 0.765

atgtttgtggttcctgatacagaaa-----ttcgagggg	CRISPR spacer
atatttgtagttcctgatacagaaattactttct-----	Protospacer
**.*****.****************     ***

21. spacer 7.1|2251736|30|NC_013161|CRT matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gcggcaaagacggcggtaaagacgacggca	CRISPR spacer
gcggcagagacggcggtgaagacagggatc	Protospacer
******.**********.*****.. *..

22. spacer 7.1|2251736|30|NC_013161|CRT matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 8, identity: 0.733

gcggcaaagacggcggtaaagacgacggca	CRISPR spacer
aggacaaagtcggcggtaaagacggcgatg	Protospacer
. *.***** **************.**...

23. spacer 1.12|513405|35|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to MN693940 (Marine virus AFVG_250M588, complete genome) position: , mismatch: 9, identity: 0.743

ttgatctaatttattgtaataacgttcaactaaat	CRISPR spacer
tctatctaatttattgtaataactgtcaatgcgtt	Protospacer
*. ********************  ****.  . *

24. spacer 8.3|2288690|34|NC_013161|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 11, identity: 0.676

ttttaaaggcaaatttaaagggtctgagagtata	CRISPR spacer
gaataaaggcaaaattaaagggtatgagcccggt	Protospacer
   ********** ********* ****  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

338084 : 399374

uncultured_Mediterranean_phage(20.0%)

transposase,integrase,protease

attL 333087:333102|attR 349630:349645

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
333087:333102	attL	NA	NA	NA	NA
WP_012796757.1\|338084_338474_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012796758.1\|338623_338932_+	hypothetical protein	NA	NA	NA	NA
WP_012593720.1\|339051_339396_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_012796759.1\|339403_340006_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_012796760.1\|340288_341122_-	uridylate kinase	NA	NA	NA	NA
WP_012593723.1\|341200_342040_-	uridine monophosphate kinase	NA	NA	NA	NA
WP_012796761.1\|342057_342882_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012593725.1\|343211_343670_+	DUF2141 domain-containing protein	NA	NA	NA	NA
WP_012593726.1\|343834_344335_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012796762.1\|344346_345810_+	carotenoid oxygenase family protein	NA	NA	NA	NA
WP_012796763.1\|345810_346626_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_012593729.1\|346648_347533_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_012796764.1\|347551_349810_-	BamA/TamA family outer membrane protein	NA	NA	NA	NA
349630:349645	attR	NA	NA	NA	NA
WP_012796765.1\|349949_350681_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SJU7	Cyanophage	6.0e-45	44.9
WP_012796766.1\|350963_351233_+	hypothetical protein	NA	NA	NA	NA
WP_012593733.1\|351338_352364_+	ABC transporter permease	NA	NA	NA	NA
WP_012796767.1\|352454_354278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012796768.1\|354336_355494_-	AAA family ATPase	NA	NA	NA	NA
WP_012796769.1\|355892_356963_+	potassium channel protein	NA	NA	NA	NA
WP_012796770.1\|357069_360078_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_012593738.1\|360096_360966_-	aspartoacylase	NA	NA	NA	NA
WP_012593739.1\|361313_361817_-	hypothetical protein	NA	NA	NA	NA
WP_012593740.1\|361994_363158_-	GuaB3 family IMP dehydrogenase-related protein	A0A1B1IS93	uncultured_Mediterranean_phage	4.5e-10	43.0
WP_012796771.1\|363299_364280_-	hypothetical protein	NA	NA	NA	NA
WP_041238626.1\|364580_365006_+	hypothetical protein	NA	NA	NA	NA
WP_012593014.1\|365080_366079_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_041238627.1\|366100_366934_+	calcium-binding protein	NA	NA	NA	NA
WP_157861643.1\|366684_367764_+	hypothetical protein	NA	NA	NA	NA
WP_012593743.1\|367747_368143_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012593744.1\|368409_368862_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012796772.1\|368975_370184_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	A0A0P0I429	Acinetobacter_phage	2.6e-13	25.7
WP_012796773.1\|370170_371070_+	FAD-binding molybdopterin dehydrogenase	NA	NA	NA	NA
WP_012796774.1\|371197_371581_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012796775.1\|371659_372763_+	XdhC family protein	A0A0P0IKN7	Acinetobacter_phage	1.0e-08	23.3
WP_157861644.1\|372901_373075_-	hypothetical protein	NA	NA	NA	NA
WP_012593749.1\|373523_374495_+	solanesyl diphosphate synthase	NA	NA	NA	NA
WP_012593750.1\|374731_376729_+	AarF/ABC1/UbiB kinase family protein	C7U092	Ostreococcus_tauri_virus	2.5e-45	30.7
WP_012593751.1\|376907_377699_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_012796777.1\|377690_379214_-	anthranilate synthase component I	A0A0B5J984	Pandoravirus	1.1e-48	31.2
WP_012593753.1\|379416_379845_-	photosystem I protein PsaD	A0A0K0KWQ5	Prochlorococcus_phage	6.4e-39	53.6
WP_012796778.1\|380170_380941_-	hypothetical protein	NA	NA	NA	NA
WP_012593755.1\|380986_381454_-	DUF29 domain-containing protein	NA	NA	NA	NA
WP_012593756.1\|381518_382661_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.6e-52	34.0
WP_012593757.1\|382858_383800_+\|transposase	transposase	NA	NA	NA	NA
WP_012796779.1\|384246_385122_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012796780.1\|385240_386434_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	5.4e-19	27.8
WP_012593760.1\|386491_387427_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	1.2e-66	43.8
WP_012593761.1\|387469_388333_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_012796781.1\|388545_390333_+	hypothetical protein	NA	NA	NA	NA
WP_012593763.1\|390356_391136_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012796782.1\|391155_393270_+	membrane protein	NA	NA	NA	NA
WP_012593765.1\|393312_393696_+	hypothetical protein	NA	NA	NA	NA
WP_012593766.1\|393780_394512_+	JAB domain-containing protein	NA	NA	NA	NA
WP_012593767.1\|394537_395140_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012593768.1\|395145_395559_-	chorismate mutase	NA	NA	NA	NA
WP_012796783.1\|395599_396418_-	signal peptide peptidase SppA	NA	NA	NA	NA
WP_012593770.1\|396533_397523_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_012796784.1\|398012_398414_+	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_012796785.1\|398516_399374_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

484755 : 493427

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012593847.1\|484755_485487_-	glutathione peroxidase	A0A1D8KSL1	Synechococcus_phage	2.4e-46	57.9
WP_012593848.1\|485683_486388_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.0e-41	44.2
WP_015783150.1\|486421_487516_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.8e-32	34.6
WP_015783151.1\|487555_488272_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_015783152.1\|488304_489195_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.4e-35	39.2
WP_015783153.1\|489191_490265_+	glucose-1-phosphate thymidylyltransferase	G3MA50	Bacillus_virus	1.5e-39	38.3
WP_015783154.1\|490282_491350_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.4e-87	48.2
WP_012593855.1\|491351_493427_-	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	6.5e-20	31.5

DBSCAN-SWA_3

1348788 : 1425871

Bacillus_phage(21.43%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015783585.1\|1348788_1351221_-\|protease	serine protease	NA	NA	NA	NA
WP_015783586.1\|1351690_1353322_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_015783587.1\|1353480_1354194_-	hypothetical protein	NA	NA	NA	NA
WP_012594642.1\|1354281_1355457_-	histidine kinase	W8CYF6	Bacillus_phage	2.9e-17	30.3
WP_015783588.1\|1355888_1357508_+	glycoside hydrolase family 57 protein	NA	NA	NA	NA
WP_015783589.1\|1357591_1358491_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_015783591.1\|1358605_1358956_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_015783592.1\|1359212_1360751_+	carotene isomerase	NA	NA	NA	NA
WP_015783593.1\|1360914_1362297_+	GAF domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	4.8e-11	20.9
WP_012594648.1\|1362315_1364004_+	AarF/ABC1/UbiB kinase family protein	A0A2N9QVT9	Dishui_lake_phycodnavirus	1.8e-60	33.9
WP_015783594.1\|1364027_1365938_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_012594650.1\|1366039_1366666_-	precorrin-8X methylmutase	NA	NA	NA	NA
WP_015783595.1\|1366683_1367496_-	TPM domain-containing protein	NA	NA	NA	NA
WP_012594652.1\|1367575_1367989_-	hypothetical protein	NA	NA	NA	NA
WP_012594653.1\|1368001_1368334_-	YtxH domain-containing protein	NA	NA	NA	NA
WP_015783596.1\|1368513_1370064_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	7.7e-82	52.6
WP_041238939.1\|1370115_1370958_-	hypothetical protein	NA	NA	NA	NA
WP_012594656.1\|1371360_1371813_-	cupin domain-containing protein	NA	NA	NA	NA
WP_015783598.1\|1371975_1372752_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012594658.1\|1372860_1373799_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012594659.1\|1374493_1375030_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_015783599.1\|1375150_1376746_-	DUF697 domain-containing protein	NA	NA	NA	NA
WP_015783600.1\|1376836_1377307_-	hypothetical protein	NA	NA	NA	NA
WP_012594662.1\|1377324_1377819_-	hypothetical protein	NA	NA	NA	NA
WP_012594663.1\|1377860_1379114_-	ribonuclease HI family protein	NA	NA	NA	NA
WP_015783601.1\|1379793_1380429_-	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_012594666.1\|1380687_1380999_-	hypothetical protein	NA	NA	NA	NA
WP_012594667.1\|1381306_1383298_-	ABC transporter ATP-binding protein/permease	A0A1V0SE00	Indivirus	7.5e-05	25.7
WP_157861678.1\|1383749_1384280_+	hypothetical protein	NA	NA	NA	NA
WP_012594671.1\|1385412_1385886_-	hypothetical protein	NA	NA	NA	NA
WP_015783603.1\|1386135_1387389_-	hypothetical protein	NA	NA	NA	NA
WP_015783604.1\|1388325_1390362_+	elongation factor G	NA	NA	NA	NA
WP_015783605.1\|1390369_1391644_-\|transposase	transposase	A0A2K9VD29	Lactobacillus_phage	8.6e-23	26.6
WP_157861646.1\|1391670_1392087_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	5.7e-24	40.8
WP_012594676.1\|1392401_1392674_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_012594677.1\|1392887_1393202_+	hypothetical protein	NA	NA	NA	NA
WP_015783607.1\|1393241_1395716_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_015783608.1\|1396009_1396882_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012594680.1\|1397072_1397174_+	cytochrome b6-f complex subunit PetL	NA	NA	NA	NA
WP_015783609.1\|1397235_1398174_-	histone deacetylase	A0A2K9KZC4	Tupanvirus	3.6e-42	31.2
WP_015783610.1\|1398264_1399440_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0R8V9X2	Thermobifida_phage	3.5e-119	57.5
WP_012594683.1\|1399479_1400241_-	GAF domain-containing protein	NA	NA	NA	NA
WP_015783611.1\|1400401_1402924_+	EAL domain-containing protein	NA	NA	NA	NA
WP_041238941.1\|1403000_1407737_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	5.3e-41	33.3
WP_015783613.1\|1407895_1410043_-	GGDEF domain-containing response regulator	W8CYM9	Bacillus_phage	1.2e-13	36.3
WP_015783614.1\|1410266_1410881_+	pseudouridine synthase	NA	NA	NA	NA
WP_041229608.1\|1411290_1411875_+	phycobiliprotein lyase	NA	NA	NA	NA
WP_012594689.1\|1412110_1412863_+	phycobilisome rod-core linker polypeptide CpcG	NA	NA	NA	NA
WP_015783615.1\|1413050_1414274_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_015783616.1\|1414392_1416924_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_015783617.1\|1417106_1418480_+	cytochrome P450	I6XNL0	Cotesia_sesamiae_Mombasa_bracovirus	8.4e-16	25.0
WP_041238943.1\|1418526_1419018_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015783619.1\|1419007_1419820_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_015783620.1\|1419909_1420338_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_015783621.1\|1420339_1422871_-	DNA topoisomerase 4 subunit A	G3M9Z5	Bacillus_virus	2.2e-94	43.0
WP_015783622.1\|1423362_1423767_+	response regulator	NA	NA	NA	NA
WP_015783623.1\|1423830_1424979_+	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	7.3e-21	29.5
WP_015783624.1\|1425040_1425871_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_013163

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013163_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013163_1

16017-16123

Orphan

Consensus_repeat	Method
GGGGACAGGGCTCCTTTTTTGTATACACTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013163_1

>merge|NC_013163|1|16017-16123|CRISPRCasFinder
GGGGACAGGGCTCCTTTTTTGTATACACTCTTCAGCCCGTCCTGTCCCTAGTGACTCCTTGTGTACCAAGTCTGGGGGGACAGGACTCCTTTTTTGTATACACTCTT

>NC_013163|1|1|16017-16123|CRISPRCasFinder
GGGGACAGGGCTCCTTTTTTGTATACACTCTT	CAGCCCGTCCTGTCCCTAGTGACTCCTTGTGTACCAAGTCTGG
GGGGACAGGACTCCTTTTTTGTATACACTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013163.1\|WP_012797087.1\|13293_14139_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_013163.1\|WP_012797083.1\|9790_10375_+\|hypothetical-protein	unknown	unknown	unknown
NC_013163.1\|WP_012797091.1\|20015_21104_+\|hypothetical-protein	unknown	unknown	unknown
NC_013163.1\|WP_041239289.1\|9038_9425_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	unknown	unknown	gnl\|CDD\|226180
NC_013163.1\|WP_012797079.1\|7585_7942_-\|hypothetical-protein	unknown	unknown	unknown
NC_013163.1\|WP_012797088.1\|14108_15662_+\|DUF3991-domain-containing-protein	unknown	unknown	gnl\|CDD\|379044
NC_013163.1\|WP_012797090.1\|19503_19812_-\|hypothetical-protein	unknown	unknown	unknown
NC_013163.1\|WP_012797078.1\|6532_7483_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|227308
NC_013163.1\|WP_012797093.1\|22283_23870_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NC_013163.1\|WP_012797080.1\|8059_8995_-\|hypothetical-protein	unknown	unknown	unknown
NC_013163.1\|WP_012797085.1\|10561_11002_-\|hypothetical-protein	unknown	unknown	unknown
NC_013163.1\|WP_012797082.1\|9421_9643_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274230
NC_013163.1\|WP_157861702.1\|19228_19369_-\|hypothetical-protein	unknown	unknown	unknown
NC_013163.1\|WP_049825361.1\|21197_22160_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_013163.1\|WP_157861701.1\|11001_12390_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212669

Protein	Function_ID	Function_description	E-value
NC_013163.1\|WP_012797087.1\|13293_14139_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	9.17712e-07
NC_013163.1\|WP_041239289.1\|9038_9425_-\|type-II-toxin-antitoxin-system-death-on-curing-family-toxin	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	7.4472e-31
NC_013163.1\|WP_012797093.1\|22283_23870_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.38842e-27
NC_013163.1\|WP_012797088.1\|14108_15662_+\|DUF3991-domain-containing-protein	gnl\|CDD\|379044	pfam13155, Toprim_2, Toprim-like. This is a family or Toprim-like proteins.	7.79847e-22
NC_013163.1\|WP_157861701.1\|11001_12390_-\|hypothetical-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	9.83256e-34
NC_013163.1\|WP_012797078.1\|6532_7483_-\|site-specific-integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	3.55077e-35
NC_013163.1\|WP_049825361.1\|21197_22160_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.40934e-25
NC_013163.1\|WP_012797082.1\|9421_9643_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|274230	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids. [Mobile and extrachromosomal element functions, Other].	2.7323e-17

>NC_013163.1|WP_012797088.1|14108_15662_+|DUF3991-domain-containing-protein
MQREALSQAVDNDPFYSPETRFTTVDYDLLEREQTRFTTVDYDPFYSPETRSKTVDNLPLARQETRSKTVDNLPLLRQESLSNSLDNDRWERQEQALLNAVNEDDESTRKRITRNLQELCRELRTGQERTTEINHQFPRTTEQKIGVFDLSTERINQELLRNNQLLQQHTDRLIRENQQARERLSRHHERLRRIKEQQERELERFKTNINLADYAQTLGYEVDKKKSSVNCLVLKNSEGYKILVGIDKTDGHYFYSSVNNDRDNGSIIDFIQKRRNLNLGEVRKELRLWLNDPSNPPYSPQQTTPKLTPITQDRHKILTEFEGFQVIVTHPYLTQRGITPETSNLPRFQGIIYMDSRNNLIFPHQDREGVCGYEIRNQQFKGFSSGGTKGLWCSQGASTDSCLVICESPLDCLSYHQLFPDANTRYMATGGTLSQKQKDLLQGALTKINDLGGEIVVATDRDEAGQKIAQELRNLAPSTAQMSRVVPTHHKDWNEALMAEIRREQEQKRSRGRGLSR
>NC_013163.1|WP_012797087.1|13293_14139_+|relaxase/mobilization-nuclease-domain-containing-protein
MLLKFFNRGTGKGSGPVEYILNATDPKGIPREPQPELLKGNPQQIITLIDSLDFKHKYTSGVISFAPTDAPTNEQLEAIITSFEDTAFAGLEPDQYDILWVKHTHTGGGATALAERGRVELHFVTPRVELTTGKSLNIAPPGANYYFEPWRDYWNMTHGWASPNDPQRARTYYPGYHALIDAQNRRLELNGQKPVSRDDARKLITNYLTAYIEEGQILNRNGIVTTLEEAGFTITRQGDNYITVTHDDLHHQSKEGKFIILPPNSHYKTDWKCNGKPCLKL
>NC_013163.1|WP_157861701.1|11001_12390_-|hypothetical-protein
MSETLNGVSSINPELNDSEDVPLTPESESLMETAVDHGEHEYKDKTVSEASQQTKTPRKRSKGEQPKTPLKKVVVCFDVGSSLNKILYQVEGHDVQYMIMEPLHLALPPESAASLPVDSGLGRPEDNAWIRYKKGEECHAIGRVAGDFKAFVNFKTLKWEIATPKILGAIGAIAEREGLGTAFRLELGVLLPWGEISSTEQLESELKSAMGGFYFRHQRLTVRLERYKCVPEGSGLAMWTGMNDRSAFSRHNFAFLMFGHRNTSSLFFRKGTLCRSSSSTTELGFYDLIDKMRGYVAGLSRNDVLRAIKTQHNGYWKQGSWPKKIASEINWSVITKSTDPERARAEVEKLESAYATSKREYWALLSNWLNSTLPPKTDIDGVFCCGGAAEFLLERVSEYFKGIEVLMPESCPSELGEALRMDKEIKENNSEFLKLNLINRFTDVWGFFSIFSGYQIKEQEVA
>NC_013163.1|WP_012797085.1|10561_11002_-|hypothetical-protein
MGSMQTDKHLKLRANPDSGLGKCIAYLQEHPMNQQTLAGQTLLARFLPFVMDRNDPQFEAISIQCVEQCLSWARAIQQYASLNMVEEVMEMNAPTVRGRLSSNAQLVKEQMTPDLEQGESDDDFLVSEQEKRRVSGEDLMSSMGLF
>NC_013163.1|WP_012797083.1|9790_10375_+|hypothetical-protein
MNVKELCDRYSLQSRKSLYSRLEAVGLKLPKDDDGRAYATEQILEQLDDLDLHLKNGGSLKNYTPVTSVTTQLESPDNAYSLENTTQTTQLTTQTTTQLSREELLEIIEVLGSAIASRLQPIDPLAYNHSLEQAQQNNWILSSSEVKQLIGIKPSCPKGENVFTRGCWAFTKAGKIGNQTGWRVKKILEGDGHK
>NC_013163.1|WP_012797082.1|9421_9643_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MKLKLRKIGNSIGTTFPKEILDKLQVNEGDTLYLTETPDGIELTAYDPEFEQVMEAAGEITRRYRNALKELAK
>NC_013163.1|WP_041239289.1|9038_9425_-|type-II-toxin-antitoxin-system-death-on-curing-family-toxin
MSEPIWITERMARAIHSQQLALFGGASGILDEGKLSSALARAKHLYTYRPDASLYELAAAIGWGLTKNHPFVDGNKRTAFVVMAVFLKVNGIDLIAPEVEVVTVMLALAAGELSEQQLSNWLADNSTH
>NC_013163.1|WP_012797080.1|8059_8995_-|hypothetical-protein
MTDQRADYDNPWKEALSLYFQPFMAFFFPEIEANINWSRGYEFLDKEFQQVVRDAEIGRREADKLVKVWRGDGTEVWVLIHVEIQSQAKEDFAQRMYVYNYRIFDMYRRSVVSLAVLADDQDSWRPDRYSDELWGCRVELRFPTVKLLDYQGRSESLADNNPFAVIVAAHLTTQQTNQDPSGRYQGKLRIAKSLYQRGYSRQDILELFRLIDWMMTLPESIESEFKQEIRNFEEDLQMPYVTSVERLARIEGLVQKGREDVIEVLEVRFEALPNELVEKINQIEDLELLKTLLRQAITIGSLAEFQGILEP
>NC_013163.1|WP_012797079.1|7585_7942_-|hypothetical-protein
MGVTRLTTNESEHPFVGQWHIYEMEMWDEDYFNMETQAYVAIETTNTGEFQFGLVTGYLDGYLEKLNGGERFSFTWEGQDEMDEVNGSGWLQLVSQDQIEGMINLHQGDRSGFKAKRA
>NC_013163.1|WP_012797078.1|6532_7483_-|site-specific-integrase
MERFLIHDSANNLKLSAPVPLSLHPAAVYLHSLSPGSVITMKQSLDVMASLLTEGDCDAMTLDWAKLRYHHTATIRRELKQRYSATTTNKMLCALRRVLEEALRLDLMEAADYAKAVDLPSVKGKKRLRGRALTALEIEGLMSVCLKDSSVLGVRDLALMGILRGTGLRRAELVALEVKDFTSDGGVLEVRGGKGDKDRTVYLPESVIGLVEDWLEVRGAFSGALLCPIRKGGRVEQRHLNPDAVLKIVKKRALEAGIESFSPHDFRRTFCSDLLDAGVDLVTVQKLAGHASPETTAKYDRRGEETKRRAVQCLSI
>NC_013163.1|WP_157861702.1|19228_19369_-|hypothetical-protein
MTNPTSSWWEQTSIAYNSAVWKSATIPKHHRIPSPLWLSLKEEGQA
>NC_013163.1|WP_012797090.1|19503_19812_-|hypothetical-protein
MPKSLTTSEPNILRPEDFDPPLKRQEPTIPGYWTLEEISGEIGTTSRKIQYDILGRPAVGLKPSLKGFKVAQVFLVPDTDALEYIQKYRNRKKYVRKQKAEG
>NC_013163.1|WP_012797091.1|20015_21104_+|hypothetical-protein
MNNKIAKSCLRAIFQFTSIWLWTVFILILALYLGKWNLVSPVYAQPINADFTIVRVDNQLNQEIDKAKEAALAKAEEVAIARLDAWISERMASVDPPFLDWYFGYWTKEKREILKTLYDVLNIINSKSFPPGYQKIVDDVKNKFEQVVLPPIHLQMELNYIAREVARSYEQELNDNLLSLKEKYLVAEQTWPNIQPRIDNVLKETTERLKGRTINTKVNELKNVASVFLVGEGLGMLTKNYNIVKPVTVGELGVISDYRLKLIKRISSTVSDSQAKQFLSSIISTIEANPQIIIAVGIITVVLLVTAALVLDYYDYKEKVAVLRPQLKNDILECLKLLKELFIYDEQIGIISVLQSLEVSQR
>NC_013163.1|WP_049825361.1|21197_22160_+|tetratricopeptide-repeat-protein
MKLQNSYTIILQKGRKTLFFFSRVFLVLILIFFGGTILCPDMIGFSQIIADPIVKNPSSEFPCYVYVLQDFQQATPGAYPNYDQVIIDYTEIIQDFPDCAEAYSDRGCAYAAIGDYTHAIQDFNKSIKLNPNYYEAYRGRGFVYGKQEKYEEAIKDFEKAIKIKPKYAQAFHGQGIAYTKLGNYEKALENFRKAIQNNPQYAEAFNGRGIAYIQMEKYRQALNDFDKAIKFNSNYIEAIYNKGIAYKQQGNSEKAIEAFTQVIQIDSDYLEAYIERGYVYGELGKYKKAIEDCEKARNKNSKSQEAYLCIAKFKNIKGIY
>NC_013163.1|WP_012797093.1|22283_23870_-|ATP-binding-cassette-domain-containing-protein
MNVIELKNVSYNREKMKHPLHNVEFIIKQGDVVQLKGDNSAGKSTLIDFILGIREPDSGEVRIFGESPNKLKHKFITGAFLQKLKFPDNLEQEMLIQLVESHYPKATEKVNSILNDFQLSNPEKSPKSHYETSNGLAGGEETILFFALAQAGSPKLLILDEPTSNLSTNNQKKIWTQIQNFIDQGNTVLFVCHDTDDAIEIKPTKTLLLENGQVNSIEENQDSLGDLRKFNSDLAENTINLWHWFSLLFQHIKFNILQTIKTDKNYLNLILISSIIFAITVSLSSNLAPSSDNSSLSSLLTYSFYFVLTAVTITGNIISVERQNKTLTKLIKILPLPPIIYLSGKVITSLLLTSLLIPLMVTITFIVNAISPLIWQSPSEFINFISSIFHSLPEILTLSVGFIIGLIPYLFLGVALGYLFGQKSIQIIALMGCMALFIPIYSRKILEFLEVSLELSNKWINLAELAGDYLAAYSPFYHYYQLILFLGKRPEYDQYLWVHIAWLIWFTIIALMIALLTYRRISIKEAKA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013163_1	1.1\|16049\|43\|NC_013163\|CRISPRCasFinder	16049-16091	43	NC_013163	Rippkaea orientalis PCC 8802 plasmid pP880202, complete sequence	16049-16091	0	1.0
NC_013163_1	1.1\|16049\|43\|NC_013163\|CRISPRCasFinder	16049-16091	43	NC_011727	Rippkaea orientalis PCC 8801 plasmid pP880103, complete sequence	1036-1078	6	0.86

1. spacer 1.1|16049|43|NC_013163|CRISPRCasFinder matches to NC_013163 (Rippkaea orientalis PCC 8802 plasmid pP880202, complete sequence) position: , mismatch: 0, identity: 1.0

cagcccgtcctgtccctagtgactccttgtgtaccaagtctgg	CRISPR spacer
cagcccgtcctgtccctagtgactccttgtgtaccaagtctgg	Protospacer
*******************************************

2. spacer 1.1|16049|43|NC_013163|CRISPRCasFinder matches to NC_011727 (Rippkaea orientalis PCC 8801 plasmid pP880103, complete sequence) position: , mismatch: 6, identity: 0.86

cagcccgtcctgtccctagtgactccttgtgtaccaagtctgg	CRISPR spacer
tagcgtctcttgtccctagcgactccttgtgtaccaagtctgg	Protospacer
.*** . **.*********.***********************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013160

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_013161

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_013163

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection