CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013166	Kangiella koreensis DSM 16069, complete sequence	1 crisprs	WYL,DEDDh,cas3,DinG,csa3	0	1	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013166_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013166_1

829985-830097

Orphan

Consensus_repeat	Method
TTAGCAGGAGCCTTTTTCTTGGCTGGTGCTTTCTTCTTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013166_1

>merge|NC_013166|1|829985-830097|CRISPRCasFinder
TTAGCAGGAGCCTTTTTCTTGGCTGGTGCTTTCTTCTTAGCGGGTGCTTTCTTTTTAGCAGGAGCCTTTTTCTTGGCTGGTGCTTTCTTCTTAGCAGGAGCTTTTTTCTTGGC

>NC_013166|1|1|829985-830097|CRISPRCasFinder
TTAGCAGGAGCCTTTTTCTTGGCTGGTGCTTTCTTCTTAGC	GGGTGCTTTCTTTTTAGCAGGAGCCTTTTTC
TTGGCTGGTGCTTTCTTCTTAGCAGGAGCTTTTTTCTTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013166.1\|WP_187287333.1\|841977_843546_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_013166.1\|WP_012800731.1\|830806_831073_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_013166.1\|WP_012800720.1\|814860_816336_-\|succinylglutamate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|181873
NC_013166.1\|WP_187287332.1\|832031_834500_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NC_013166.1\|WP_012800723.1\|819049_819724_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|182867
NC_013166.1\|WP_012800740.1\|843598_844396_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NC_013166.1\|WP_012800734.1\|834711_835866_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NC_013166.1\|WP_012800726.1\|821213_823712_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NC_013166.1\|WP_012800728.1\|826623_827652_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_013166.1\|WP_012800724.1\|819783_820419_-\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NC_013166.1\|WP_012800722.1\|817645_818866_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|179933
NC_013166.1\|WP_012800727.1\|823876_826507_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_013166.1\|WP_012800735.1\|835882_836374_+\|hypothetical-protein	unknown	unknown	unknown
NC_013166.1\|WP_012800732.1\|831369_831999_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380065
NC_013166.1\|WP_012800721.1\|816362_817385_-\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|377426
NC_013166.1\|WP_143715091.1\|820488_821214_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226647
NC_013166.1\|WP_012800736.1\|836427_836886_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|181904
NC_013166.1\|WP_012800738.1\|840561_841866_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_013166.1\|WP_012800729.1\|827722_829879_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NC_013166.1\|WP_012800737.1\|836891_840278_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NC_013166.1\|WP_187287333.1\|841977_843546_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_013166.1\|WP_012800731.1\|830806_831073_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	3.6597e-11
NC_013166.1\|WP_012800720.1\|814860_816336_-\|succinylglutamate-semialdehyde-dehydrogenase	gnl\|CDD\|181873	PRK09457, astD, succinylglutamic semialdehyde dehydrogenase; Reviewed.	0
NC_013166.1\|WP_187287332.1\|832031_834500_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NC_013166.1\|WP_012800723.1\|819049_819724_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|182867	PRK10959, PRK10959, outer membrane protein W; Provisional.	3.39422e-69
NC_013166.1\|WP_012800740.1\|843598_844396_+\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	7.00847e-87
NC_013166.1\|WP_012800734.1\|834711_835866_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NC_013166.1\|WP_012800726.1\|821213_823712_+\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_013166.1\|WP_012800728.1\|826623_827652_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NC_013166.1\|WP_012800724.1\|819783_820419_-\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	4.56851e-97
NC_013166.1\|WP_012800722.1\|817645_818866_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|179933	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase.	0
NC_013166.1\|WP_012800727.1\|823876_826507_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_013166.1\|WP_012800737.1\|836891_840278_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.25657e-107
NC_013166.1\|WP_012800732.1\|831369_831999_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380065	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in the Pseudomonas aeruginosa PsrA which regulates the fadBA5 beta-oxidation operon. Functional analysis of PsrA indicated its importance in regulating b-oxidative enzymes. It has also been suggested that PsrA, a member of the TetR family of repressors, could affect global gene expression including activation of rpoS.	3.78212e-32
NC_013166.1\|WP_012800721.1\|816362_817385_-\|arginine-N-succinyltransferase	gnl\|CDD\|377426	pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Arginine N-succinyltransferase EC:2.3.1.109 catalyzes the transfer of succinyl-CoA to arginine to produce succinyl-arginine. This is the first step in arginine catabolism by the arginine succinyltransferase pathway.	0
NC_013166.1\|WP_143715091.1\|820488_821214_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	1.47e-111
NC_013166.1\|WP_012800736.1\|836427_836886_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|181904	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional.	3.07273e-38
NC_013166.1\|WP_012800738.1\|840561_841866_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.05286e-29
NC_013166.1\|WP_012800729.1\|827722_829879_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0

>NC_013166.1|WP_012800729.1|827722_829879_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MQFYASCPKGVEALLIDELTSLGATNLKEHPSHIVFEGDLELAYKACLHSRLANRIYLCLLDEEFTSVDDMYQKVNGIEWSWHFDMQQTFVVDAIARKNDDVRHSGFAAQKVKDAVVDYYQERFEQRPSIDKDNPDYRIHAIINGRQLKIGIDLAGRSLHQRGYRPISGRAPIKENLAAALLIRAGWPELSKQGYSFHDPMCGTGTILVEAVMIACDMAPGLFNPTYSFENWKQHDAELWQTTIASARRQFNKNKLALNNRFIGSDSHRKSLELAKEVILNAGFDELIEVSQQDIRRPKLEAFKEPGLLLSNPPYAERLGEEDEVIQLYRDFGDYIKSHCIGWQAAIITNEVSFAKAMGMRSHKQYKFKNGAIDCQLYLFDVKEENFYKPFDPTVVNPDWDKNLSEGAVMLKNRMIKNQQRLKSYLKQNDVTCYRLYDADLPEYSAAIDVYDDMVHIQEYAPPKDIPPKVAQRRLNEIVRVTSGLLQIPESEIALKQRQRQKGDSQYQKHSEEEQFQVVHEQGLQFYVNLNRYLDTGLFLDHRKTRKMIMAEANGKRFLNLFAYTGSVSVYAAKGGAKTTTVDMSRTYLNWAVKNFGLNSIPIYGHEFVQSDCLQWLDEAQGQRTYDLIFLDPPTFSNSKRMDVTFDVQRDQVELINQTMNLLDKKGKLYFSNNFKKFEMETELKEHFDVQEITARTLPSDFQKSRNHHRCWLIQHKS
>NC_013166.1|WP_012800728.1|826623_827652_+|quinone-dependent-dihydroorotate-dehydrogenase
MYSLLRSILFMLDGERSHHLSLNSLKMLNKLKLSGLMSQPQVDDPVEVMGIKFPNRVGLAAGLDKNGEYVDALSHFGFGFIEVGTVTPRSQPGNPKPRLFRIKDAEAIINRMGFNNDGVDALLNNIAKTHFNGVLGINIGKNFDTPVEKAVDDYLIGMEKIYQRADYMVVNISSPNTPGLRDLQFGETLKSLLDNLKKKQQALHQEHKVYKPLAIKIAPDLSSSDIEELAGTFKQYELDGIIATNTTFDRSKVEGMKHAEEQGGLSGKPLASQSTKVIKRLVEALDDSIPVIGVGGITDEQSAIDKIEAGAKLVQIYSGFIYHGPQLVYEVAKALKEHQQAQ
>NC_013166.1|WP_012800727.1|823876_826507_+|type-I-DNA-topoisomerase
MGKSLVIVESPAKAKTINKYLGKDFIVKSSIGHIRDLPTGSQNKKPVDAKERARKAAATRKLSPEQKAKQKALKEKTALFARMGINPEHDWEARYEVLPGKEKVLNELKKFAKDADTIYLATDLDREGEAIAWHLRELLDGKETQFKRVVFNEITKKAIQQAFAKPGDLDMNYVNAQQARRFLDRVVGFMVSPLLWRKISRGLSAGRVQSVAVRLLVEREREIRAFIPEEYWDIHANTLTQSKDDLRLQVNKYQGKNFRPNSEQETNKALEVLKSSSYKVVTREDKPQKSKAPKPFITSTLQQAASTRLGYGVKKTMMMAQRLYEAGYITYMRTDSTYLSTDAVDACRDYIKTNIGAEYLPKEANSYSSKEGAQEAHEAIRPSDVTKKVGHLSGMEKDAERLYDLIWRQFVACQMLPAEFDVTSLKVQAGDYELKARGRVMRFDGWTQVLPMQKKNAEDEELPNVKEGELLELKKLDPKQHFTKPPARFSEAALVKELEKRGIGRPSTYASIISTIQDRGYVRIENRRFYAQKIGEIVTDRLVESFSDLLDFSFTATMEKHLDDIASGRQNWKVTLDEFYDEFSQQLKKADEEEGEGGMRRNEAVETDILCDKCKKNHMAIRNASTGVFLGCMGYSLPPKERCKNTVNLIPGEEFIAADEEEEARYLHDKKRCTKCNSTMDDYLVDENTKLYICGNNPDCDGYEIEKGEFKIKGYDGPILECDKCGSEMQLKTGRFGKYFDCTNDDCKNTRKLLKSGQPAPPKADPIPMPELQCEKVDDHYVLRDGAAGIFLAASKFPRNRETRAPAVDELVTVKDKLDPKYKFLGEAPLKDPDGNRTFVKFSRKTGQQYVAGVKEDGKASGWTAFYENGKWVPQK
>NC_013166.1|WP_012800726.1|821213_823712_+|FtsX-like-permease-family-protein
MRGMAWRLFRRDWQSGEVKVLFFALMIAVMAMVAIGTITDRTHRAMGEQSSEFLGADYTLRSPRAIEQSWLDKGRADGLQLTESTGFSTVLAKGDEFQLVSVTALGGKFPLKGEFEIADKPFTRGQSMQAQPENGSAWVEPRVLAALDAEKGDKVDFGAIQLTIAGVIVGGPGQASEMFNVAPKVYINQSDVERANIIQPGSRVSYTLFIAGDIQPRENFIDWLKPQMNKTQRLTGGKEGTPALQASIERAETFLRLASLISVVLAGVAIAVAAGRFSRRHYDYAAIYRCLGMQIAQVHRLYISQLMIMGLIGSAIGVALGLVIQQAIIVQFADFLPKPMVPINWAPVIAGGLSGLVVLIGFALPAFFQIARVSPLRVLRKEMVPQPVSSWLIYLLAIFTMALLMWWQSGSLKLVGILLGVALVAFIVIRLMAWLIFKVGIWLGKRGSTAVRYGLGQLKRYPAFTISQITAFGLAFIIMLSTVLIRSELLSEWQSQLPEDAPNHFLINVQPSEVPNLETILAEQDVETAGIYPMVRGRVTGLNGKPIEEAVSEEAQTDGSLRRELNLTWVEDVPKANEVVKGEWWDDAEHQPDENGVYQLSIDQNLAGRLGVDLGDVFEFSIGGVDVKGKITSFRDIQWDSFQPNFFMIFEPGALNENMATYITSFHLPLEKKAALNTILREMPTVTIIELDVIMEQVQTILDQVTTAVEFIMLFVLLAGVAVLYAVLQASKEERVLSATLLKTLGAQKKFIRMTLLSELALLGVFSGILGVIGGEVLVSVLYKEAMNIEPVLHPWFWLWVPLMAVTFICIAGWWGLKSLLNQPAHQVLRQL
>NC_013166.1|WP_143715091.1|820488_821214_+|ATP-binding-cassette-domain-containing-protein
MLTTRNLTKTVKLPEQSLTILSEVSLTVNEHDSVAIVGASGSGKSTLLSLLAGLDTPSEGEVELAGHPIHKLSEDERAAVRAQYVGFVFQSFHLLPGLTALENVMLPIELKEDKNAHKKAKELLVKVGLAERLNHYPHQLSGGEQQRVAIARAFASEPKILFADEPTGNLDTGNGEKVIDLIFELNQQLGTTLVLVTHDDRLAERCQRLVRLEAGKVVEDSVNSAQVVKTNTAQADQVETA
>NC_013166.1|WP_012800724.1|819783_820419_-|arylesterase
MKKKLAWILFLVVAIFNIATIAKAEEKPTILVLGDSLSAGYNIELEQGWVELLNQKLQREGYPHTVVNGSISGDTTTQGLLRLPTLLEQYQPEVVIIELGGNDALRGTSPTLIKRNLSNLISTSKRSGAEVLLLGIQIPPNYGQRYAQAFFDNYAQLANEKKVKLVPFFLENVGGNNELMQEDGIHPNAKAQPTLLKNVWPQLETQIKMPD
>NC_013166.1|WP_012800723.1|819049_819724_+|outer-membrane-beta-barrel-protein
MKQLIKSASAVAVGAVLSLTAVDAFAHKEGDFILRVGAAQVSPNDDSSNVLGANDGVTVDSATGVGFSGTWMLSDNWGLEVLAALPFTHDIDGSGDLAGLPIGETKHLPPTVSFQYYPEFGTDDFSPYFGLGVNYTKFFEEKASPELKAALSTNDVKLELDDSFGLAGQIGADWKISDDFYFNTAVWYIDIDTEAAVKVDGITATTVDVQIDPWVVMVGFAWRF
>NC_013166.1|WP_012800722.1|817645_818866_+|aspartate-aminotransferase-family-protein
MSDKSAHSNYTRATFDEVMVPNYNPATIIPERGDGSRVWDQDGNDYVDFAGGIAVTALGHNHPALVKALKDQADKIWHLSNVFTNKPALELADKLTKATFADKVFFANSGGEANEAAFKLVRKYAHDNFGPEKSEIISFKQSFHGRTLFTVCVGGQPKYTEGFEPLPGGISHAEYNNLQSLEAIISDKTCAVVMEPVQGEGGIVPATEEFVKGVRALCDKHNALLVFDEVQTGVGRTGHLYAYMGMGVTPDILTTAKAMGGGFPIGAMLTTDKIAASFVPGTHGSTYGGNPLGCAVSNAVFDTINTPEMLQSVLDKSAKIVARLEEIGKKYDVFSSVRGRGLLLGAVLNEKWQGKARQFIEAGWQHGVMVLVAGMNVVRLAPALNITDEEIEDGLNRFEKAVASIA
>NC_013166.1|WP_012800721.1|816362_817385_-|arginine-N-succinyltransferase
MVIRPAQHTDLQDILALAASAGTGLTTLPNDPIRIEDKIKNSVDAFSRDIVEPGPEYYFFVLEDDVTGKVVGTCALVAAVGMDEAFYTYKLSTVVNTSHDLGIYNKHKILVLCNDYTGTTEIATLYLSPDYRGGINGRLLAKSRFLFMADFPQRFADKVIAEMRGFSDEQGRSPFWESLGRRFFSMDFAKADAISGLGSNQFIAELMPQHPIYVDMLSGDARQVIGQVHPDTRPALAMLKREGFRYQNYVDIFDAGPTIEVPKDQIKTYRASRLLPIRVGTPEGETESIMISNRRLQEFKTTVFETRIDTDELIVSAEVLERLQVKEGDTVRAASLRNKR
>NC_013166.1|WP_012800720.1|814860_816336_-|succinylglutamate-semialdehyde-dehydrogenase
MTQDAHKNLMINNQWLAGQGDGFSSINPASGEVIWQGNSATEEQVEEAIAAAQKAGWDWSQKTLDERIAIMKNFEQQLKDHKEELAEMIAKETGKPYWETLTEAGAMAGKIEISIRAYHERTGVKEAEMGAGIAATRHKPHGVLAVFGPYNFPGHLPNGHIVPALIAGNTIVFKPSELTPAVAELTVKLWQKAGLSEGVLNLVQGEVNTGIALASSKHIDGLLFTGSETVGNLLHKQLGGQPGKVLALEMGGNNPLILGDVKDLKAAVYHTIQSAYISAGQRCTCARRLFVPKTGQGDQFIEMLTEAVNRIRVSHYNDDNKPFMGPVVSEKAAKDLVRAQQNLLDKGAKALVKMEHLKAGTGFVSPALLDVTGITHEDEEFFGPILQVYRYDDFEGAIAEANNTRFGLSAGLFSDDKAQYDTFYRRIRAGIVNWNNQLTGASSAAPFGGIGNSGNHRPSAYYAADYCAFPVASIENPACVMPETLTPGVTL
>NC_013166.1|WP_012800731.1|830806_831073_+|glutaredoxin-family-protein
MNDKEQKIFFYTTFGCHLCEKVEAMLIEVSHQFKDKFHYQIIAFDIIDDDKIFEQYRYSIPVLKKEKNDDELGWPFNYQQLCDWLGLN
>NC_013166.1|WP_012800732.1|831369_831999_+|TetR-family-transcriptional-regulator
MTKTESTKSRILDAAEQLFAERGFAETSLRTITTRARVNLASVNYHFGSKKSLIQAVFDRFLQDFTKELSLELMTLEQLSSDQLEAEKLLNALIRPLLSLNSRRNNAISIFMRLLGRAYAETQGHLRRYVTDKYGHVLVRFTHLFQKGYPNLTIDQIFWRLHYMLGSMIFTLGGSDALRQISQADFNRDLDVEDVIKEMLPFLAAGMKA
>NC_013166.1|WP_187287332.1|832031_834500_+|acyl-CoA-dehydrogenase
MGLLQIVVMLLVVGFCAYQRMAMKKAMIINAVALVVLWIHGGFTWGLFISLLIFAVVATFYLLPDLRIDWISRKAYLFMQKVLPPMNETEKTALEAGDVWWEGDLFRGNPDWNKMLNITKPVLTEEEQSFVDNETEELCGMLDDWDIVHKRKDLPPEVWQFIKDKGFLGMIIPKEYGGKGFSALAHSTVVTKIATRSGSAAVTVMVPNSLGPGELLLHYGTQEQKDHYLPRLAKGEEIPCFALTSPVAGSDAGAIPDKGIVCKGKYNGKEVLGIKLTWNKRYITLAPVATIVGLAFKLYDPDNLIGDKEDYGITCALIPADHPGVEIGQRHLPMNQAFMNGTTTGKDVFIPMEMLIGGQEFAGQGWRMLMESLAAGRSISLPAMGTAVAKLSYRMTGAYSLVREQFKTPIGRFEGVEEAMARIAGLAYRTEASRVMTAGAVDLGIKPSVVSAIAKYHMTEMGREIMNHSMDIHGGRAIIMGERNYLANGYMSQPIGITVEGANILTRNLMIFGQGAIRCHPYVLREMMAAQLEDTEEGVKRFDSLLFRHIGYGVSNFARTFALGLSAAKFASKPVGGQTGKYYQHLTRMSSALALTSDIAMGILGGDLKRKERLSARLADVLSHLYMCSAVLKYYQDNDRPLADLPYVKWNMEYGLYKTQEAFYEFYENFPIKAVGKVLRFIAFPYGKSYHMPSDKLEQEIVKPMTQNCEIRDRITEYAYVGKTADDVTGRVELAFLKVLAADEVRRKLRKAMKAGDLDKNATNMERIEQAIEKGIIDKEEQQILVDAEEARMDVIQVDDYSHEEISGVVEDKPKKKKSKSS
>NC_013166.1|WP_012800734.1|834711_835866_+|2-isopropylmalate-synthase
MSQKDKLVIFDTTLRDGEQSPGASMDKEEKLEIAKQLELMKVDVIEAGFAIASPGDFEAVKLVADNIKDSTICSLSRAMEKDIQAAGDALKGANSGRIHTFIATSPLHMKHKLQMEPEQVIEHAVRSVKFARGLCDDVEFSCEDAGRSDLDFMCKIIEQVINAGARTINIPDTVGYNLPDQYANTIEQLIQRIPNSDKAIFSVHCHNDLGLAVANSLAAVQKGARQVECTINGLGERAGNASLEEVVMAIKTRPDYFDVEVDIDTRHIVPTSQLVSKITGFAVQPNKAIVGDNAFAHESGIHQDGVLKHRETYEIMRAEDVGWANNRMVLGKHSGRNAFKSHLAQLGVQFDNSDDLHDAFVAFKKLADQKHDILDEDLLSLIKR
>NC_013166.1|WP_012800735.1|835882_836374_+|hypothetical-protein
MSSWNRSYLEAMSVPVWVSRQEAIANIVTEPAEAEVATKADGQLEQETTLGFVSVVGDMQAKICILVTADQDLQQAKSNFLLLAQAWKQWQDTDLPLTLLQLVEQDHSTENAEPINDLKEKQLLLASSQSLELPHLTVKPAPTLNWQSASDKKAWWQLIQQLV
>NC_013166.1|WP_012800736.1|836427_836886_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MFYPDNEYHIRQLTEADLAQVCSIEKRAYTIAWTDKVHAECVESGYPSLILKQGGAIVGYAIFNYLYDECHLMNIVTDPNFQGLGVATRLIKAMYDKARKSGMVKVILEVRESNTIAIEFYHKQGFAEIGLRKNYYKTTDGQEDALVMELIL
>NC_013166.1|WP_012800737.1|836891_840278_-|EAL-domain-containing-protein
MLSRHRKFQNSDHAVSTWVIALVISLGVVIVLPAPDVSKGLASYLPLHTALEVISIAVASMVFGIAWVTQKFQPTTKVIILGCGALGVALLDLTHTISYQGMPDFVTPSGPEKAINFWLAARFTIAFAILLVATITLNFERKLAKLSRYFWLALTLMTVGLFHFWFLYFPDSVPDTYSNVEGLTQFKVISEYLLIGLYLVAAFLFINQLNNIREFGANWLVAAAITMAMSEFFFTLYANVSDLYNLIGHIYKIFAFSFLYRALFVEAIQSPFMKMSQLQSKLSATLNALPDLLIEVDAKGNYLDIHSANPELLLRREEKLIGSNIKEIMDKENAKRCMQAIETAGQIGRSQGTRIELQVPSGVRTFELSISRKKGHLDQPSTFLILSRDITSTINIEQHIAHEAKLNKHLLELQNHLHIGGERYFMQHSVDIAENLTNSSIAFIHFIDDSQKTIKIVTWSTSTLAHHCTANFENHYPIDQAGIWADAIRNKRPVVINDYKTASDKKGLPEGHAHLKRLISLPVIDNDKVTMMVGVGNKESDYTAQDVETLQILANTIWSLTKQSWQDATIRRLSTGIDQNPYPVLITDTDGNIQYVNKAFIETTGFSETEAIGKNPIEFSAEQDPDKTFKMIWRQLARGDAWRGELVSRRKDGSHYTEFAMIYPVRNNKGKIINYVAHKEDITLKKIAEEKIHQLSNYDQLTGLLKREMLEERLQQLLDDSFKQKQAMTVMWLDLDNFKTINDSLGHQVGDLILIEVANRLRFELGKQSIISRIAGDTFAAVLPLTNEHSAALIAKNVLEVVQRQIKFNSHILSISPSIGLAISPNDGQSADKLIMCAETAMYRAKHDGRNTFRFFAQEMQEHSLRSLQLSIALKEALTNDQFHLVYQPQMSLSNNSMVGAEALLRWEHPEWGTVSPAEFIPLAEQSGLIVQIGEWVIQQVAQQQKSWLERGLPEVIIAVNLSALQFHQPDLVETITSLVRKAGVVPENIEVELTEAVALKDPEVAGTTIDALSRAGFKVSIDDFGTGYSSMSYLKKFAVHKLKIDQSFIKDIVTDIDDQAIVTAIIQMAHSLHKTTIAEGVETQEQLDFLRKKGCEEMQGYWYSRPLVTEQFEQFLKSHELQKTQET
>NC_013166.1|WP_012800738.1|840561_841866_+|mechanosensitive-ion-channel-family-protein
MQQQFTEWLKKHGVEFSDVTGLISVLGLIVLISLVVHVILHRVVLRFIENRARKSEKLWKRSLFENKLFNRFALMIQGIIIYIQAGLWLTPDSVALNWVQTLSLLWIQLFALLTIFSFLDALYLMGQKKTETRALPLKGIFQSIKIVAVLVIGIFVISILVGKSPLLILSGLGAMTAVVMLVFKDPILGLVAGIQLSANNMLEVGDWLEMPQYGADGDVIEIALTTVKVRNWDKTITTVPTYALISNSFKNWRGMMEAGGRRIKRSVLIDSTSVEFMSDDVIQRLNHSKLLAPYLQQKLEEVNQYNQENGLDMSFRINGRRLTNLGTFRAYLLSYLKSHPQIHQELTLMVRQLEASANGIPLEVYAFTKTTDWAAYEGIQSDIFDHIFAVLPEFGLRVHQSPTGYDVRSLALPKQESSEKQRMSEPESGQNKSS
>NC_013166.1|WP_187287333.1|841977_843546_+|peptide-chain-release-factor-3
MVSQIENRRTFAIISHPDAGKTTITEKVLLFGNQIQEAGVVKGRGGKHATSDWMELEKQRGISVTTSVMQFPYGGRTVNLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEARTIKLMEVCRLRDTPIITFMNKMDRDIREPIELLDEVEDVLKINCSPVTWPIGMGKQFKGVYHILEDKTYLYQSGLGHKIQDVRIIEGLDNPALDEAVGYLAKDLREELELVQGASHEFDLQEFLDGKLTPVFFGTALGNFGVNHMLDGLVKWAPSPLARESDERQVEATEPTFTAFVFKIQANMDPQHRDRIAFARICSGKYTKGMKMRHVRLNRDMTISNALTFLAGDREHLEEAYAGDIIGLHNHGTIQIGDTFTEGEAIKFKGIPNFAPELFRRVRLRDPLKNKALLKGLVQLSEEGATQVFRPQTSNDLVLGAVGVLQFDVVAHRLKNEYKVECIYDQVNVATARWVECDDEKKFEEFKRKNADNLALDGGDNWTYLAPTMVNLNLAIERWPDVRFFETREH
>NC_013166.1|WP_012800740.1|843598_844396_+|TatD-family-hydrolase
MFKPKHKEPEIKLFDSHCHLDFPVFDKDREVILSNLHKVGIEGVLIPGVTQDKWRNLRQLAALRPDVHVALGLHPMFLKEHKKQHLHDLELAVTVNNLSAIGEIGLDYYEKEVDRKNQIALFKAQVEIAKSAKLPVILHVRKSHEDILLYLKTLHFEHGGIVHAFNGSLEQAKRYRDFGFKLGFGGAVTYPRAVKLRSLAAELPLSDIVLETDAPDMKPYNYNKDHNTPLNIFHNFNSLVELRDESAHEIAETTTRNSKQVLSIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013166_1	1.1\|830026\|31\|NC_013166\|CRISPRCasFinder	830026-830056	31	NZ_CP045274	Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence	60748-60778	7	0.774
NC_013166_1	1.1\|830026\|31\|NC_013166\|CRISPRCasFinder	830026-830056	31	AP014279	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C67, * SEQUENCING IN PROGRESS *	18480-18510	8	0.742

1. spacer 1.1|830026|31|NC_013166|CRISPRCasFinder matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 7, identity: 0.774

gggtgctttctttttagcaggagcctttttc	CRISPR spacer
gtgggctttcttcttagctggagccttctgt	Protospacer
* * ********.***** ********.* .

2. spacer 1.1|830026|31|NC_013166|CRISPRCasFinder matches to AP014279 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C67, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.742

gggtgctttctttttagcaggagcctttttc	CRISPR spacer
aacaactttctttttagcaggtgctttttta	Protospacer
..  .**************** **.*****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1192878 : 1202440

Paramecium_bursaria_Chlorella_virus(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041296150.1\|1192878_1195164_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	3.9e-90	52.1
WP_012801053.1\|1195502_1196186_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_012801054.1\|1196192_1197548_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	9.0e-87	41.6
WP_012801055.1\|1197544_1197928_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	9.3e-05	33.9
WP_012801056.1\|1197965_1199234_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.9e-93	43.6
WP_012801057.1\|1199397_1200078_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_012801058.1\|1200080_1200464_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_012801059.1\|1200554_1201412_-	N-carbamoylputrescine amidase	M1H510	Paramecium_bursaria_Chlorella_virus	4.4e-79	49.3
WP_143715042.1\|1201450_1202440_-	agmatine deiminase family protein	M1HLE1	Paramecium_bursaria_Chlorella_virus	1.8e-52	36.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage