CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013216	Desulfofarcimen acetoxidans DSM 771, complete sequence	14 crisprs	cas14k,cas3,csa3,cas14j,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DinG,PrimPol,RT,cas3HD,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,WYL,cas7b,cas8b1,c2c9_V-U4,cas8c	58	27	22	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013216_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_1

933526-937981

Unclear

Consensus_repeat	Method
GATCTAATTTAGCCATAGTGGAATGTAAAT	PILER-CR
GATCTAATTTAGCCATAGTGGAATGTAAAT	CRISPRCasFinder
GATCTAATTTAGCCATAGTGGAATGTAAAT	CRT

67 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_013216_1

>merge|NC_013216|1|933526-937981|PILER-CR,CRISPRCasFinder,CRT
GATCTAATTTAGCCATAGTGGAATGTAAATGCACTTTTATATACACCTCTATGCCCCACTATTTCAAGATCTAATTTAGCCATAGTGGAATGTAAATTGGTTCCGTCAATATCTATTTGTAGAACATAGACGGATCTAATTTAGCCATAGTGGAATGTAAATCGTCCATAATGCTTTCAAGAGACTCGCGCATAGCGATCTAATTTAGCCATAGTGGAATGTAAATCCCGAACTGCTAAGTCCTGCAGCAACAGCAGATCAAGATCTAATTTAGCCATAGTGGAATGTAAATCCTATATTCCGGGGCCGATGTGGCAGCCTGCTGCGTGATCTAATTTAGCCATAGTGGAATGTAAATGCGACTAATGCGTAACAATTCGGCAGCTTCGTCAGGGATCTAATTTAGCCATAGTGGAATGTAAATAGTATTGACACTAATAACACGGTTCATGTCAGCGGCGATCTAATTTAGCCATAGTGGAATGTAAATTTTTGCACCTCCTATATATACCCCGACAACTCGTAAGATCTAATTTAGCCATAGTGGAATGTAAATCCTAATTCTACGTATGATTCAACTGTTCCGACAACTGTGATCTAATTTAGCCATAGTGGAATGTAAATACTTCAGAGAATAAAGCACCTTTGGCGATTTGTTCAGATCTAATTTAGCCATAGTGGAATGTAAATGTATTTAGTGCAGCCTCTACCTGACTTAGCACGATACGATCTAATTTAGCCATAGTGGAATGTAAATAAGTATAATTGGAACGCTCTATACGAGGAATATAACTGATCTAATTTAGCCATAGTGGAATGTAAATCAAGTACCTCTCCTCGCGGGCTTCCCGGCCCGCTCGTGATCTAATTTAGCCATAGTGGAATGTAAATTAAATATGGACGAAGGGCAAGGAGAACCGTCAAGCGGATCTAATTTAGCCATAGTGGAATGTAAATTTCCAGGTCAGTGCGAAGCCACCAGCCATAAAACAGGGATCTAATTTAGCCATAGTGGAATGTAAATTGAGTATAAGGTCCGGAAATATATTTCATTACACAGATCTAATTTAGCCATAGTGGAATGTAAATGATACTTTTCTGGACTGCTGCTGAAAACCATAAAAAGTGATCTAATTTAGCCATAGTGGAATGTAAATGTAAGCATTGATGTGGGTTCGAGTCCTGCGCCCGGCGTGATCTAATTTAGCCATAGTGGAATGTAAATTATTTAAATACTGATATTGAGGAGTTAGCGGGGCTGTGATCTAATTTAGCCATAGTGGAATGTAAATACCTTTGTAGGATTGCGTTTGCGGGAGGCAAGAGAGTGATCTAATTTAGCCATAGTGGAATGTAAATTCCGGGGCTTTGGATAGCATGGTTGCTTTGGCCTAGATCTAATTTAGCCATAGTGGAATGTAAATGAGTTATTGCAGCAGGTAAAGGTTGCTTGGGAGAAGAGATCTAATTTAGCCATAGTGGAATGTAAATGTAACTGCAACCGTTGCGGAAATTCGTGCAATGGATGATCTAATTTAGCCATAGTGGAATGTAAATGGGGTGGCGTCAGCTTCAGCTATCAGGACACTTAGCGTGATCTAATTTAGCCATAGTGGAATGTAAATTATGACATAAAAAGAAAATTACCGTAAGGAGGACTGTGATCTAATTTAGCCATAGTGGAATGTAAATCTAACAAAACGTTCCAGATAATCGCAAAGTATGCGGGATCTAATTTAGCCATAGTGGAATGTAAATTGCTACCCTACTTATGAAAATGGGAGTGCAGCCAAGATCTAATTTAGCCATAGTGGAATGTAAATGATGGCGCTGTATGGAGTGCGGCGCCGGCGCATAGATCTAATTTAGCCATAGTGGAATGTAAATTATATCTACCAGGTGACCAAGGAGGAATGCCTAGAGATCTAATTTAGCCATAGTGGAATGTAAATAAAGTTCAGCGAACTTATGAGAAACCTCTAACCTGTGATCTAATTTAGCCATAGTGGAATGTAAATTATTTAACACCTCCCTCTATAATCTTTGATTTTCTCGATCTAATTTAGCCATAGTGGAATGTAAATCAGAGCAAGTGCTGCAGATACAGGCTGCCGGTGATGATCTAATTTAGCCATAGTGGAATGTAAATAAAATATATCTGTCATACATAGCGCCATTTTTAAACCGATCTAATTTAGCCATAGTGGAATGTAAATACGCCGGACGAAATTGTATCAATAGTTACAGCTTAGATCTAATTTAGCCATAGTGGAATGTAAATGCTACTGACCCCGCTGTTATTGACGGAATTCAAGAAGATCTAATTTAGCCATAGTGGAATGTAAATTATGTCTCCTGATTGTAAATTATTAGTATAGTCATAGATCTAATTTAGCCATAGTGGAATGTAAATTGGCCTGTTTTTCCGGTCAGAATCAGACCGTCAGCTGATCTAATTTAGCCATAGTGGAATGTAAATGGTGGTTCGCGGCAAAGCTATAAAACGAATCATACCGATCTAATTTAGCCATAGTGGAATGTAAATTTCGTTTTAACCCGCTAGCAGGCTTTCTGCTGTTTGATCTAATTTAGCCATAGTGGAATGTAAATAAGACAAACGCAGGCCGGTACTGGCCGCCAAGCGTCGATCTAATTTAGCCATAGTGGAATGTAAATTTTTTTAAAGATGAACAAATGGTTATCATTGAGATGATCTAATTTAGCCATAGTGGAATGTAAATGATTAGCTGTTTAACAATGGAACAGAGTTTAATTAGCGATCTAATTTAGCCATAGTGGAATGTAAATGACATCTTAATCTAAAAAACTGTATTTTTTAGCTGCGATCTAATTTAGCCATAGTGGAATGTAAATTAACAGAGATCAAGAAGCGTGATTTGCTTTGTTATATTGATCTAATTTAGCCATAGTGGAATGTAAATATGATGAAAAACCTGATTTAATCAGGATTGTTGGAGATCTAATTTAGCCATAGTGGAATGTAAATGGATTTGCACTCCTGGGCTATGTGTGTGCGCTGGTGATCTAATTTAGCCATAGTGGAATGTAAATTTTAATTCTTCTTGGGTAACCATTCCGCTTATGCCAGATCTAATTTAGCCATAGTGGAATGTAAATGCAATGACAGTTTGTTCCGTTAAGGAGGCATCAATGATCTAATTTAGCCATAGTGGAATGTAAATGACAACGGCAAGTGGGAAGAAAAATACACTAGGCAGATCTAATTTAGCCATAGTGGAATGTAAATAATATTATGCCAGGAGTGCAGGAGGGGGACTGTCAAGATCTAATTTAGCCATAGTGGAATGTAAATTCGACAAATTTGATTTTAGCTATTATGGCGATAACGATCTAATTTAGCCATAGTGGAATGTAAATAACAATATGCCAGTAAATTAATTAGATGCGAATACTGATCTAATTTAGCCATAGTGGAATGTAAATAAGTTAGAACCAGAAGAGGTGGGTATAGCAGATGAAGATCTAATTTAGCCATAGTGGAATGTAAATCGAAAAACTGTTGTAATACGTCCTGGGTTTTTGTACGATCTAATTTAGCCATAGTGGAATGTAAATGTGCATGTTGAAGTTGTAGACAGTAATGAAAAATTTGATCTAATTTAGCCATAGTGGAATGTAAATATGCATACCACATACATGATGTTGCATACGACCCTTGATCTAATTTAGCCATAGTGGAATGTAAATATGATACTTGAAGAGGGCATGGATTTTAAGCCTTTGATCTAATTTAGCCATAGTGGAATGTAAATGGTGGTTCGCGGCAAAGGAATAAAAGCTGTCATAGGATCTAATTTAGCCATAGTGGAATGTAAATTCTTCCTTAACTGTCTTGATGTCATGACACCGCTTACAGATCTAATTTAGCCATAGTGGAATGTAAATGAGTGTTATGAGATCCTATGTGCTAGTATCTATTAACGATCTAATTTAGCCATAGTGGAATGTAAATACGGTTCATCAGGTAAGATAATCCGCTTTGATTTTCGATCTAATTTAGCCATAGTGGAATGTAAATGGGATAAGGTGTTTTTGACTTCAACGCTGCGGCCTCGATCTAATTTAGCCATAGTGGAATGTAAATGGTTAATTGACACTAAAGGTCAGTTAATACGCCTTGATCTAATTTAGCCATAGTGGAATGTAAATGGTCTAAGTTATTTGCAATTATTAACTATCGGGTGAGATCTAATTTAGCCATAGTGGAATGTAAATACGCATTACGAGTGCGTGAAAAGTACTTTTTTAGCCGATCTAATTTAGCCATAGTGGAATGTAAATTGAATTAGCTCGTATCTTTTCAATCGGTACTGGTATGGATCTAATTTAGCCATAGTGGAATGTAAATATCAGATGCGGTAAACAAGGTAATACCTAGTAGAATGATCTAATTTAGCCATAGTGGAATGTAAAT

>NC_013216|1|1|933526-937981|PILER-CR
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCACTTTTATATACACCTCTATGCCCCACTATTTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGGTTCCGTCAATATCTATTTGTAGAACATAGACG
GATCTAATTTAGCCATAGTGGAATGTAAAT	CGTCCATAATGCTTTCAAGAGACTCGCGCATAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCCGAACTGCTAAGTCCTGCAGCAACAGCAGATCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCTATATTCCGGGGCCGATGTGGCAGCCTGCTGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCGACTAATGCGTAACAATTCGGCAGCTTCGTCAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	AGTATTGACACTAATAACACGGTTCATGTCAGCGGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTTGCACCTCCTATATATACCCCGACAACTCGTAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCTAATTCTACGTATGATTCAACTGTTCCGACAACTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACTTCAGAGAATAAAGCACCTTTGGCGATTTGTTCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTATTTAGTGCAGCCTCTACCTGACTTAGCACGATAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGTATAATTGGAACGCTCTATACGAGGAATATAACT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAAGTACCTCTCCTCGCGGGCTTCCCGGCCCGCTCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAAATATGGACGAAGGGCAAGGAGAACCGTCAAGCG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTCCAGGTCAGTGCGAAGCCACCAGCCATAAAACAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAGTATAAGGTCCGGAAATATATTTCATTACACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATACTTTTCTGGACTGCTGCTGAAAACCATAAAAAGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAAGCATTGATGTGGGTTCGAGTCCTGCGCCCGGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTAAATACTGATATTGAGGAGTTAGCGGGGCTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACCTTTGTAGGATTGCGTTTGCGGGAGGCAAGAGAGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCCGGGGCTTTGGATAGCATGGTTGCTTTGGCCTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAGTTATTGCAGCAGGTAAAGGTTGCTTGGGAGAAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAACTGCAACCGTTGCGGAAATTCGTGCAATGGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGGGTGGCGTCAGCTTCAGCTATCAGGACACTTAGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGACATAAAAAGAAAATTACCGTAAGGAGGACTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CTAACAAAACGTTCCAGATAATCGCAAAGTATGCGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGCTACCCTACTTATGAAAATGGGAGTGCAGCCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATGGCGCTGTATGGAGTGCGGCGCCGGCGCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATATCTACCAGGTGACCAAGGAGGAATGCCTAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAGTTCAGCGAACTTATGAGAAACCTCTAACCTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTAACACCTCCCTCTATAATCTTTGATTTTCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAGAGCAAGTGCTGCAGATACAGGCTGCCGGTGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAATATATCTGTCATACATAGCGCCATTTTTAAACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGCCGGACGAAATTGTATCAATAGTTACAGCTTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCTACTGACCCCGCTGTTATTGACGGAATTCAAGAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGTCTCCTGATTGTAAATTATTAGTATAGTCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGGCCTGTTTTTCCGGTCAGAATCAGACCGTCAGCT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTGGTTCGCGGCAAAGCTATAAAACGAATCATACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTCGTTTTAACCCGCTAGCAGGCTTTCTGCTGTTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGACAAACGCAGGCCGGTACTGGCCGCCAAGCGTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTTTTAAAGATGAACAAATGGTTATCATTGAGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATTAGCTGTTTAACAATGGAACAGAGTTTAATTAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GACATCTTAATCTAAAAAACTGTATTTTTTAGCTGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAACAGAGATCAAGAAGCGTGATTTGCTTTGTTATATT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGATGAAAAACCTGATTTAATCAGGATTGTTGGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGATTTGCACTCCTGGGCTATGTGTGTGCGCTGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTAATTCTTCTTGGGTAACCATTCCGCTTATGCCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCAATGACAGTTTGTTCCGTTAAGGAGGCATCAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GACAACGGCAAGTGGGAAGAAAAATACACTAGGCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATATTATGCCAGGAGTGCAGGAGGGGGACTGTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCGACAAATTTGATTTTAGCTATTATGGCGATAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AACAATATGCCAGTAAATTAATTAGATGCGAATACT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGTTAGAACCAGAAGAGGTGGGTATAGCAGATGAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CGAAAAACTGTTGTAATACGTCCTGGGTTTTTGTAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTGCATGTTGAAGTTGTAGACAGTAATGAAAAATTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGCATACCACATACATGATGTTGCATACGACCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGATACTTGAAGAGGGCATGGATTTTAAGCCTTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTGGTTCGCGGCAAAGGAATAAAAGCTGTCATAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCTTCCTTAACTGTCTTGATGTCATGACACCGCTTACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAGTGTTATGAGATCCTATGTGCTAGTATCTATTAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGGTTCATCAGGTAAGATAATCCGCTTTGATTTTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGGATAAGGTGTTTTTGACTTCAACGCTGCGGCCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTTAATTGACACTAAAGGTCAGTTAATACGCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTCTAAGTTATTTGCAATTATTAACTATCGGGTGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGCATTACGAGTGCGTGAAAAGTACTTTTTTAGCC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAATTAGCTCGTATCTTTTCAATCGGTACTGGTATG
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATCAGATGCGGTAAACAAGGTAATACCTAGTAGAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT

>NC_013216|1|1|933526-937981|CRISPRCasFinder
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCACTTTTATATACACCTCTATGCCCCACTATTTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGGTTCCGTCAATATCTATTTGTAGAACATAGACG
GATCTAATTTAGCCATAGTGGAATGTAAAT	CGTCCATAATGCTTTCAAGAGACTCGCGCATAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCCGAACTGCTAAGTCCTGCAGCAACAGCAGATCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCTATATTCCGGGGCCGATGTGGCAGCCTGCTGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCGACTAATGCGTAACAATTCGGCAGCTTCGTCAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	AGTATTGACACTAATAACACGGTTCATGTCAGCGGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTTGCACCTCCTATATATACCCCGACAACTCGTAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCTAATTCTACGTATGATTCAACTGTTCCGACAACTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACTTCAGAGAATAAAGCACCTTTGGCGATTTGTTCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTATTTAGTGCAGCCTCTACCTGACTTAGCACGATAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGTATAATTGGAACGCTCTATACGAGGAATATAACT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAAGTACCTCTCCTCGCGGGCTTCCCGGCCCGCTCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAAATATGGACGAAGGGCAAGGAGAACCGTCAAGCG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTCCAGGTCAGTGCGAAGCCACCAGCCATAAAACAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAGTATAAGGTCCGGAAATATATTTCATTACACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATACTTTTCTGGACTGCTGCTGAAAACCATAAAAAGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAAGCATTGATGTGGGTTCGAGTCCTGCGCCCGGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTAAATACTGATATTGAGGAGTTAGCGGGGCTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACCTTTGTAGGATTGCGTTTGCGGGAGGCAAGAGAGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCCGGGGCTTTGGATAGCATGGTTGCTTTGGCCTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAGTTATTGCAGCAGGTAAAGGTTGCTTGGGAGAAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAACTGCAACCGTTGCGGAAATTCGTGCAATGGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGGGTGGCGTCAGCTTCAGCTATCAGGACACTTAGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGACATAAAAAGAAAATTACCGTAAGGAGGACTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CTAACAAAACGTTCCAGATAATCGCAAAGTATGCGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGCTACCCTACTTATGAAAATGGGAGTGCAGCCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATGGCGCTGTATGGAGTGCGGCGCCGGCGCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATATCTACCAGGTGACCAAGGAGGAATGCCTAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAGTTCAGCGAACTTATGAGAAACCTCTAACCTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTAACACCTCCCTCTATAATCTTTGATTTTCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAGAGCAAGTGCTGCAGATACAGGCTGCCGGTGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAATATATCTGTCATACATAGCGCCATTTTTAAACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGCCGGACGAAATTGTATCAATAGTTACAGCTTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCTACTGACCCCGCTGTTATTGACGGAATTCAAGAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGTCTCCTGATTGTAAATTATTAGTATAGTCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGGCCTGTTTTTCCGGTCAGAATCAGACCGTCAGCT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTGGTTCGCGGCAAAGCTATAAAACGAATCATACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTCGTTTTAACCCGCTAGCAGGCTTTCTGCTGTTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGACAAACGCAGGCCGGTACTGGCCGCCAAGCGTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTTTTAAAGATGAACAAATGGTTATCATTGAGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATTAGCTGTTTAACAATGGAACAGAGTTTAATTAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GACATCTTAATCTAAAAAACTGTATTTTTTAGCTGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAACAGAGATCAAGAAGCGTGATTTGCTTTGTTATATT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGATGAAAAACCTGATTTAATCAGGATTGTTGGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGATTTGCACTCCTGGGCTATGTGTGTGCGCTGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTAATTCTTCTTGGGTAACCATTCCGCTTATGCCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCAATGACAGTTTGTTCCGTTAAGGAGGCATCAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GACAACGGCAAGTGGGAAGAAAAATACACTAGGCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATATTATGCCAGGAGTGCAGGAGGGGGACTGTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCGACAAATTTGATTTTAGCTATTATGGCGATAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AACAATATGCCAGTAAATTAATTAGATGCGAATACT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGTTAGAACCAGAAGAGGTGGGTATAGCAGATGAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CGAAAAACTGTTGTAATACGTCCTGGGTTTTTGTAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTGCATGTTGAAGTTGTAGACAGTAATGAAAAATTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGCATACCACATACATGATGTTGCATACGACCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGATACTTGAAGAGGGCATGGATTTTAAGCCTTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTGGTTCGCGGCAAAGGAATAAAAGCTGTCATAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCTTCCTTAACTGTCTTGATGTCATGACACCGCTTACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAGTGTTATGAGATCCTATGTGCTAGTATCTATTAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGGTTCATCAGGTAAGATAATCCGCTTTGATTTTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGGATAAGGTGTTTTTGACTTCAACGCTGCGGCCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTTAATTGACACTAAAGGTCAGTTAATACGCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTCTAAGTTATTTGCAATTATTAACTATCGGGTGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGCATTACGAGTGCGTGAAAAGTACTTTTTTAGCC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAATTAGCTCGTATCTTTTCAATCGGTACTGGTATG
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATCAGATGCGGTAAACAAGGTAATACCTAGTAGAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT

>NC_013216|1|1|933526-937981|CRT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCACTTTTATATACACCTCTATGCCCCACTATTTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGGTTCCGTCAATATCTATTTGTAGAACATAGACG
GATCTAATTTAGCCATAGTGGAATGTAAAT	CGTCCATAATGCTTTCAAGAGACTCGCGCATAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCCGAACTGCTAAGTCCTGCAGCAACAGCAGATCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCTATATTCCGGGGCCGATGTGGCAGCCTGCTGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCGACTAATGCGTAACAATTCGGCAGCTTCGTCAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	AGTATTGACACTAATAACACGGTTCATGTCAGCGGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTTGCACCTCCTATATATACCCCGACAACTCGTAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCTAATTCTACGTATGATTCAACTGTTCCGACAACTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACTTCAGAGAATAAAGCACCTTTGGCGATTTGTTCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTATTTAGTGCAGCCTCTACCTGACTTAGCACGATAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGTATAATTGGAACGCTCTATACGAGGAATATAACT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAAGTACCTCTCCTCGCGGGCTTCCCGGCCCGCTCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAAATATGGACGAAGGGCAAGGAGAACCGTCAAGCG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTCCAGGTCAGTGCGAAGCCACCAGCCATAAAACAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAGTATAAGGTCCGGAAATATATTTCATTACACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATACTTTTCTGGACTGCTGCTGAAAACCATAAAAAGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAAGCATTGATGTGGGTTCGAGTCCTGCGCCCGGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTAAATACTGATATTGAGGAGTTAGCGGGGCTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACCTTTGTAGGATTGCGTTTGCGGGAGGCAAGAGAGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCCGGGGCTTTGGATAGCATGGTTGCTTTGGCCTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAGTTATTGCAGCAGGTAAAGGTTGCTTGGGAGAAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAACTGCAACCGTTGCGGAAATTCGTGCAATGGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGGGTGGCGTCAGCTTCAGCTATCAGGACACTTAGCGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGACATAAAAAGAAAATTACCGTAAGGAGGACTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CTAACAAAACGTTCCAGATAATCGCAAAGTATGCGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGCTACCCTACTTATGAAAATGGGAGTGCAGCCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATGGCGCTGTATGGAGTGCGGCGCCGGCGCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATATCTACCAGGTGACCAAGGAGGAATGCCTAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAGTTCAGCGAACTTATGAGAAACCTCTAACCTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTAACACCTCCCTCTATAATCTTTGATTTTCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAGAGCAAGTGCTGCAGATACAGGCTGCCGGTGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAATATATCTGTCATACATAGCGCCATTTTTAAACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGCCGGACGAAATTGTATCAATAGTTACAGCTTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCTACTGACCCCGCTGTTATTGACGGAATTCAAGAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGTCTCCTGATTGTAAATTATTAGTATAGTCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGGCCTGTTTTTCCGGTCAGAATCAGACCGTCAGCT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTGGTTCGCGGCAAAGCTATAAAACGAATCATACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTCGTTTTAACCCGCTAGCAGGCTTTCTGCTGTTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGACAAACGCAGGCCGGTACTGGCCGCCAAGCGTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTTTTAAAGATGAACAAATGGTTATCATTGAGAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATTAGCTGTTTAACAATGGAACAGAGTTTAATTAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GACATCTTAATCTAAAAAACTGTATTTTTTAGCTGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAACAGAGATCAAGAAGCGTGATTTGCTTTGTTATATT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGATGAAAAACCTGATTTAATCAGGATTGTTGGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGATTTGCACTCCTGGGCTATGTGTGTGCGCTGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTAATTCTTCTTGGGTAACCATTCCGCTTATGCCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCAATGACAGTTTGTTCCGTTAAGGAGGCATCAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GACAACGGCAAGTGGGAAGAAAAATACACTAGGCA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATATTATGCCAGGAGTGCAGGAGGGGGACTGTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCGACAAATTTGATTTTAGCTATTATGGCGATAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AACAATATGCCAGTAAATTAATTAGATGCGAATACT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGTTAGAACCAGAAGAGGTGGGTATAGCAGATGAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CGAAAAACTGTTGTAATACGTCCTGGGTTTTTGTAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTGCATGTTGAAGTTGTAGACAGTAATGAAAAATTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGCATACCACATACATGATGTTGCATACGACCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGATACTTGAAGAGGGCATGGATTTTAAGCCTTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTGGTTCGCGGCAAAGGAATAAAAGCTGTCATAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCTTCCTTAACTGTCTTGATGTCATGACACCGCTTACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAGTGTTATGAGATCCTATGTGCTAGTATCTATTAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGGTTCATCAGGTAAGATAATCCGCTTTGATTTTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGGATAAGGTGTTTTTGACTTCAACGCTGCGGCCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTTAATTGACACTAAAGGTCAGTTAATACGCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGTCTAAGTTATTTGCAATTATTAACTATCGGGTGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACGCATTACGAGTGCGTGAAAAGTACTTTTTTAGCC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAATTAGCTCGTATCTTTTCAATCGGTACTGGTATG
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATCAGATGCGGTAAACAAGGTAATACCTAGTAGAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015756532.1\|944479_946597_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_013216.1\|WP_015756538.1\|952764_953007_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
NC_013216.1\|WP_157863061.1\|927976_930226_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_013216.1\|WP_083773365.1\|943910_944069_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271188
NC_013216.1\|WP_015756537.1\|951809_952694_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NC_013216.1\|WP_015756525.1\|926368_927241_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_013216.1\|WP_015756526.1\|927227_927980_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
NC_013216.1\|WP_042315396.1\|923926_924661_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187783
NC_013216.1\|WP_015756522.1\|922809_923634_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|181535
NC_013216.1\|WP_015756530.1\|931750_932029_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013216.1\|WP_015756528.1\|930255_930744_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_013216.1\|WP_015756524.1\|924673_926365_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NC_013216.1\|WP_015756521.1\|922004_922823_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NC_013216.1\|WP_015756115.1\|938140_939955_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NC_013216.1\|WP_042315405.1\|950147_951785_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NC_013216.1\|WP_015756533.1\|946611_947865_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015756539.1\|953003_953504_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_013216.1\|WP_015756535.1\|949105_950155_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015756529.1\|930755_931748_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_013216.1\|WP_015756534.1\|947869_949003_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235064

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015756532.1\|944479_946597_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	3.05255e-55
NC_013216.1\|WP_015756538.1\|952764_953007_+\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	2.28893e-06
NC_013216.1\|WP_157863061.1\|927976_930226_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	5.97626e-62
NC_013216.1\|WP_083773365.1\|943910_944069_-\|hypothetical-protein	gnl\|CDD\|271188	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio. Recombinases RitA (also known as pAE1), RitB, and RitC are encoded by three adjacent and overlapping genes. Collectively they are known as the Recombinase in Trio (RIT). This RitA family includes various bacterial integrases and integrases from the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1. All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.72466e-06
NC_013216.1\|WP_015756537.1\|951809_952694_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	5.94355e-42
NC_013216.1\|WP_015756525.1\|926368_927241_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.5475e-51
NC_013216.1\|WP_015756526.1\|927227_927980_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.68394e-22
NC_013216.1\|WP_042315396.1\|923926_924661_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	2.87283e-24
NC_013216.1\|WP_015756522.1\|922809_923634_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	1.45864e-175
NC_013216.1\|WP_015756530.1\|931750_932029_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.08167e-27
NC_013216.1\|WP_015756528.1\|930255_930744_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.66291e-58
NC_013216.1\|WP_015756524.1\|924673_926365_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	1.92793e-18
NC_013216.1\|WP_015756521.1\|922004_922823_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	4.73712e-132
NC_013216.1\|WP_015756115.1\|938140_939955_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.72605e-11
NC_013216.1\|WP_042315405.1\|950147_951785_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NC_013216.1\|WP_015756539.1\|953003_953504_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.45745e-17
NC_013216.1\|WP_015756529.1\|930755_931748_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.92633e-160
NC_013216.1\|WP_015756534.1\|947869_949003_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235064	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated.	1.11071e-114

>NC_013216.1|WP_015756530.1|931750_932029_+|CRISPR-associated-endonuclease-Cas2
MYIILVYDIEMDEGGAKASRRVFKTCKKYLTHIQKSVFEGDITPSLLQKLRIELDKFIRKDRDSVLVFKSREERWLQKEFWGKEDDKTSNFF
>NC_013216.1|WP_015756529.1|930755_931748_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MAESFYLFSNGELQRKDNVLRITASDGRYKDIKVEMTQDIYLFGEVDLNTKCLNYAGQLSIPIHIFNYYGSYTGSFYPKEKNVSGKLLIEQVNHYTDKYKRLEIAKAFIEAASYNILRNLRYYSERGRDLQACMTEIKGLRKVIPRTEDINELMGIEGCIRQAYYNSWKDIINQEVDFEKRVKRPPDNMINALISFVNSLIYATCLTEIYKTQLHPTVSYLHSAGERRFSLCLDISEIFKPLIGDRLIFSMLNKNMLTEKDFESQSNFCYLKDNGRKRLLQKYDEDLKRTIRHKVLNKNVSYRYLIRLECYKLIKHLMSDKKYEGFTIWW
>NC_013216.1|WP_015756528.1|930255_930744_+|CRISPR-associated-protein-Cas4
MHITGTMFYYYFVCHRKLWCFYNYINYENESEKVILGKLIDESAYGREHKHIMIDQTVNVDFIKDWQVLHEIKKSRSIEEASIWQVKYYLYFLNQRGIKIEKGILDYPKIKKRREVVLQEGDSEKIEEILISIEKILLQEKMPPPIESKICKSCAYYEYCYI
>NC_013216.1|WP_157863061.1|927976_930226_+|CRISPR-associated-helicase-Cas3'
MGGFSLDENALAKSAPKEDIQTHTDNLLKNVNLLKELYPNLKVDWGLLHWACVYHDLGKLHFKFQDRIKGIKHHPGEIPHGLLSLAMIDHKALKNMGYDRNAIKLLYQAVAYHHDRKMPFQNEEIEKEFAGLYPNFASFEYDKLPEKLKIATEINQRYFSVNKRFYEERDKDLFFEFIMLEGLLNRMDYAASAGIPVETPNDFLSASMDELMCSWQEVDENTNWNDLQIYMRNKPDKNLIVIAQTGMGKTEAGLLWLGNAKGFFTLPLKSAINAIYKRISEKIVREKMDERVGLLHSDTYIKYLEQGEKDESISLDTYYTKTRQLSLPLTICTLDQLFNFVFRYRGFEQKLATLSYSKVIIDEVQMYSPELIAYLVLGLHYITRMEGKFAILTATLPTLFLDLLREQDIIFEPAQIFTNDIIRHSLKVLDEDINSKDIVDISKQYGGKKILVICNTIKSALKLYHQLAQVAGKQQVWLLHSHFTKEDRSIKESHIMEMGKRENTQCGIWVATQIVEASLDIDFDLLFTELSDLNGLFQRMGRCYRNRILDMEYNCFVFTGGNKRCSGVGAFIDKKVHNCSKESLVGIDGIITEGQKIAMVEELYTKEKLSDYYRNIKENIDYVKSINEYEFSKTDVNNKFRSIDTVSVIPRGVYNKYPVEINEAINILKADYSGVDKSEARVHRASARRIIAEQTVDIPFYLAQKIILKKIYINAYEQLSIAECEYNSQEGIIKPDMKTGGEDFSSHSF
>NC_013216.1|WP_015756526.1|927227_927980_+|type-I-B-CRISPR-associated-protein-Cas5
MKAIRLRLWQDMVNYKKPTSFQLKETYPLPPYSTIIGMVHSLCGYEEYKSMKVSVQGKYFSKVNDLYTRYEFKNAMKYELARHQIQVGEYGICQGVATAELLVDVELLIHIAPEDQTLVDEIYDAFIRPREYPSLGRREDILTIEEVKLVTLTETELEQQIKSLDGYYAYIPYEMVRDERVNLTNNVTGVTYTGTRYKLTKNYELVNYGSKKVPKLFRRWNKVDVVYASVTALAEETFMIDEDNFVAFMV
>NC_013216.1|WP_015756525.1|926368_927241_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKIKGLTITIIFQAESANYGESVGNVASLKKISRGQGDQYTYISRQALRYNITEQLGEDLAPVKAEGSGDKKVVQFSEEATIDKYPEIDFFGYLKTEKGTAGKKRSAKVRLSNAISLESFKGDLDFLTNKGQADKIKENMNIAQAEIHRSYYRYTIAADLEQIGEDKEYGIILENGERARRVKRLLDTVAFLYRDIRGRREDLKPLFAIGGVYDIKNPVFQNVVNAKNNCIDVAEIKGVLYDSIKPDTFCGVVDRSFDNTNELKEQLHALSMPEFFTLLKQKVDMYYESN
>NC_013216.1|WP_015756524.1|924673_926365_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MKSDKIRLTLGDWQWNASVIGFINIVGEENVCHIEADTVEFWPEALDGFENKYFAYFINTYEKTLSWYKIVNFQDRLNTYEENNFEEFDLKALEFLNVYIKDVKRYIKSNSYKAAYELIDSEVELLSFEKQLITIKEPKNQQRFDVDKSEIVNEVKRRFLLLQQIINYCASSEGRRYIGAKNAIYNIINNAWNGVSFLNSQTKEKNIYSDYKSYFVDTATGYLQSEKGKYKYNCFVCDAPIKDMSNDLSFLNATGFDVARKSSHVWNFQNDITICPLCKLIYSCLPAGIIYTYNRGIYINQTIKLKDAVRINNKIKSRILRSQDGSMRPIYHALVSVLHEQENDSAKYELADVQVVRYENESYRFNILAKPMLQIIVNSKKELDSLIRVNFIENGRNINVYDEVIGRIFNNQNLFTLIHKMLYGKLSDASKCYFNGSHVRNVLIINQLICSRLGGMKMDNTYLVKKSREAGESLRNKYFNKDSNHKLAGICYRLLNALKTTNENMFMDVTLNCYLYVNSQVPKVITDALGRGKDFSTMGYAFVSGLIDGQDGSGNKEKKAEGE
>NC_013216.1|WP_042315396.1|923926_924661_+|CRISPR-associated-endoribonuclease-Cas6
MRIKVDIETGSMELPIDYRRKFLSYIKSAFEDYNQELYTELYEMGSSPKSFCFSIYFLPEVEIGKEEIILRSKRFTAWFTTPDILMGVHLINALMARRNKWFPLADCDNKLRTLSINNVQERPITANTALFRILSPIVIRDHDNKEMKKDWYYTYEDSEFEIIWKRNLKAELKNKFGRDVSSDINELQIKPIKLRKTVVRNYDIYIPCTIGNFILEGERYLLEYIYKAGIGSRRSLGFGCLDIV
>NC_013216.1|WP_015756522.1|922809_923634_+|3-deoxy-7-phosphoheptulonate-synthase
MPQCKLYSREHQKDSTVVKVGDVSIGDGTVVVIAGPCSVENREQLVGLSVQIKEMGVNVLRGGAFKPRTSPYDFQGLGLEGLKILAEAREASGLPVITEVMDIRQMDLVCRYADIIQIGSRNMQNTPLLREAGKTDKPVMLKRGLSSTLEEWLLAAEYILMNGNKQVILCERGIRSFETYTRNTFDINAIPAIKHLSHLPLIADPSHGTGRRELVGPVATAALAAGADGIMIEVHPDPSKALSDGAQSLRPQEFKDMMNGLRNFRLLFDKKVSA
>NC_013216.1|WP_015756521.1|922004_922823_+|tryptophan-synthase-subunit-alpha
MIEKRLAELRKNGEKALIPFVTAGDPDLPTTVKLVLSMAEAGADVIELGVPFTDPVADGPAIQKASLRSLAGGTNLAGILDSVREIRQKSDIPLVLMTYYNPVFRFGIDKFVAEAAEAGVNGLIMPDVPLEESGPLAKPAREKGIDLIPLVAPNSPEERIKKITAEAGGFIYCVSSLGVTGVRKSIKTDIANFISRVKKYTELSVAVGFGISGPAQAAEMAAYCDAVIVGSALVNLIEANAASAELAEILAGKVRELKAAISRKEGEAVAAV
>NC_013216.1|WP_015756115.1|938140_939955_+|IS1634-family-transposase
MDLQPILEQLAKLPPEILMKIMPELKVEVPKADPSGAVLIGVFLARSLGIGKIIDNFIGEEYVTYEHLREDRANGSKCRVSTGLACEIMVGDMLGRNKDLTRLYKFEEACENWQVETILGIPSEKFNDDKMGRALDAINSNAKYMANVLQDIVLSASKKFGVPLNTFYNDTSSIPVSGVMEDNDKVQYGYGGLPGLKQLILNLTIASGASLPVTSSIDSGNVQGGTTFERSFEKVKEITDDQEFEMIIDRGILTQDNMHLMLTNSNQKAFFIGPLKDELSKNWVLEQLNEAKKDDFAAIDYRSKKEIERNLPRHYEALETKYTFKVKLEPPSEGSKNKKQLKKSKRIFATHTIRAVIYCDLNKKPKEQERRQKRITSTEDALVELNGKLNKRNLITKEACEKAVDNIFKGQPEMRRLFNVTIKLNQHNAIVMSWSKDEAIIPELEKTDGIFVLLTNHDKEKVDANELLTRYRGRNDIEISFRFLKGSLDLQQVFLRNPERVDAYCFLKVLAMLVLNLAAWLLAKNGKKMSPQKLQRELGDLTISEQRLQPIGIHHWNGTNIPNTIDVLVNLFNLPHPLELIEVINSAINFSYHIEKWFKDNFRK
>NC_013216.1|WP_083773365.1|943910_944069_-|hypothetical-protein
MLKSKTNVDTIANSLGHSDTSTVLKYLATDGDTMRQCALSLKGIEVKGGMLS
>NC_013216.1|WP_015756532.1|944479_946597_+|SpoIIE-family-protein-phosphatase
MNQLVLKFGIRNKLLLLVLGISLVSLLIFAYISYDAMKKLGNYAVESSAKLGTSAANDSQNALEKQTGEYILRVAKDQADISDKMLQHVKDNINEMAEYAAALWNNPNAFVSNPPLSLIDAGTRVRVPYYLEVPGAIDPAAMKKELGLLGNMKYIFSPILSNNLNISVVSIGTPSGITVLFSNSPPFDNKGFDPRVRPWYQKAMKQKDVIWTEPYEDAFGGGLMVTCAKACYTKKGQFVGVVSADVTLNALKEQIINTQIGNMGYALLMDEKGEFIVSPETGLEHEKWNTSLINTVIERKTGVELNSFGYENKYVAYAPVSSTNWILAVIMPQNEIIKPIVETKHKIAASTRKSNEYITDSIKSVLTRFAVMLVIMLSIIIFLAVRLSDKMVKPLLALSNGVKIVGGGNLEYNLAVHTKDEIEDLAAAFNKMTFDLNTYIKNLEETTAEKERIESELKIAHAIQNSMLPRIFPPFPERKEINIFASMEPAKEVGGDFYDFFFIDQHKLCFVIADVSGKGVPAALFMVITKTLIKNHALLGLPADEIMTVVNDMLCEDNDENMFVTAFLAILDVHTGSLTFANAGHNYPLLCRNGGEYDWLTSKKSFVLGGLENIEYQLNELVLDQGDKLFIYTDGITEAMDDEERLYSEMRLQKTVNRLKDFAEAELVEGIKKDIREHVKGMSQSDDITMLVLRYNGCENNATVL
>NC_013216.1|WP_015756533.1|946611_947865_+|hypothetical-protein
MQCRRATLSIPADVNLTQVVTGFVEKAGNAFGLMKRECLAITLAAEEVFAFIAGTGTSNNEIQIVCRNGGYYVEMSFQLKSCILPVDAFNLTKSGVTGDMEGAEQLGLILAARTVDRLSVDRLGRDTFILRFVMDKRYPLVEPAALPELSGRFNVQEADISSLKELSARILSCYGNAVDSFLTVPGKLIDMAASGDYDALVSINKKGQVGGGIVFSRNRQMSEAYGPYVFGKEDGLPQMLVEGMIEKLGRAKDTLCLVIMKPTPQTPSEYFEPLQGSAVYRQLSDDNGARIFTHSCFKVFLQDFYENLVLPRVIQDVEYTGEELAQYSALATAIDRQSKRSELTLLWAGQNLEENLRAHVELLQTQNIEDISFLMQLGSSDEVMMAPMVLSAGFEPWMVLPWARQGDVAIFKYKRRK
>NC_013216.1|WP_015756534.1|947869_949003_+|histidinol-phosphate-transaminase
MSGRFPALETLVPPYIQRFEAYIPSKPDAVLKEMFGCNHLLRLNNNENAFGPSPAALEAIKSFNSASASIYPSGDAYFLRQRLGEATEHSSEAFIVGNGANEVIAFVIKAFCCEGDNIITADKTFAVYEWVAEFSGFEARLVPLVDYRFDPDAMLARMDGRTKIIFICNPNNPTGSYWNESLLQQFLDRVDGKCIVVLDEAYAEFIEKSDFPDGLSLIRKYPNLIVFRTFSKMFGLAALRIGYLVSNPKLADIIRRTSICYSVNMLAQVAAEASLRDAAFQISRTRAMINSSRKYICGELDRLGLSYIAGEGNFLMIRVPMSDTSVYRRLMQHGVMVRTMTAFRFPNYIRLTLAKLPAMEEFVNAMEILLKKRVGIQ
>NC_013216.1|WP_015756535.1|949105_950155_+|hypothetical-protein
MDLQEEKSVHEQSWVIDLFKPEDAEGVVGLYRAIYGEYFPLPDIYIADWHREQVQNNDSYRVVARLPSGRLIGTVALFRSVPTNNELYEGGGLMVLKEYQTQNVAIQLVRFVCNSLPKMHNLGQIWGEAVCNHLVSQMLSIKNGHIACALEVDMMPEAAYEKLSERGQNINSRVSALVVFKAFDPDSQVVYLPLAYEDALKKLYAPFNFGHKFLRPDSNLEDGSNTGANINTMPGAGITRITVSQIGIDFASWLDRTHNELKNSGSKVYQVIIPLNTPLVDKAAENLRNEGYWLGGLLPRWFGHDGFLMQKTLYEPDFSKIKVYSKQGKEVLAMVKADYEKKLGCETNV
>NC_013216.1|WP_042315405.1|950147_951785_+|AMP-binding-protein
MFNVEGATLWDLLEYNASVRENNSALLFPSKDVDLSYGQLWAQANAVAKGLMSLGIQQGEHIAIWSPNSPEWLALEYGSAAVGTPLVMINTSYRMLEMEFALKQMDVVALFIADKQSTANDYIETIGILCPGLLEKPSGEWNSDRFPKLRYVIGLGEKRLPGMLMWSDIIKAAEKTEDSAFLKRKLKVKADATAFIMFTSGTTGEPKGAMISHENILITMRSLKEYLNLTESDRICLPIPFFHAFRLGMSNLAAQIGIASVICEQNQANQIVQDIQKTGVSLLCGTPTMFIGWMEALENLKNDGSSLSKAVLAGASLYTETVNRILERTTIKEIWDIYGTTETMVVFGNRISHRQELEFTSAGKLMQGGEVKIVEAAGERVSAAGETGELLIRGPGVMKGYYNRPEATEKAINIEGWYRSGDMAVIDTDGGISIVGRIKEMLVRGGENIFPREIEEYLMTHPKVKEAQVVGIPSEYYGEEPVAFIILQEGETATQIELKKYCRERIAYFKVPVYVYFVDSFPKTASGRVQKFKLKEQAIKKVAFK
>NC_013216.1|WP_015756537.1|951809_952694_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MFAGNYVNTIFYYWCGWPADPELLLGGIGAPLVRDRRFADAKAALGKETKSPYTRSGLEYTEMRWEMRVYAAKLTAGVSDFDLDRIASRLTPERQERIRKFVSKEDARRSVLAELMLRQIILESLGLSGKEISFGANSYGKPFLVGIGDFHFNLSHSGEWVVCVTDNAPVGIDIEMIRPVEYNIARKFFLPAEYGDLMAKNEAERLHYFFSLWTLKESYIKARGEGFARPLDSFSIRIDEGGNVRLETEDMPGGWFFKRYGIDYRYKMAVCAAHGGLPEAVIVQDWHDYLGTAF
>NC_013216.1|WP_015756538.1|952764_953007_+|acyl-carrier-protein
MNRQTVLEELMLIVKNQLGDRAKSINYDFNVSQINLDSLDISIIIAAVEEKYDCTIRMDDFIKLKTLHDFANYILNEVKQ
>NC_013216.1|WP_015756539.1|953003_953504_+|MFS-transporter
MKNHPLIACSDFRKYFLGRSISAVGDKFYTIALAWWVLSQGENSGVLLGILMASSILPVVLFGPMAGTLADRMNRKKCMLIADGARFFFISVLFILCMFDWLSLPLLYLLVFLGFPLTFILNGFLLNMFSLQQLLIFNGIAVLIVNFGFLVIPKYRFPGGDILCKL

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Crispr_ID: NC_013216_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_2

940048-943825

Unclear

Consensus_repeat	Method
GATCTAATTTAGCCATAGTGGAATGTAAA	PILER-CR
GATCTAATTTAGCCATAGTGGAATGTAAAT	CRISPRCasFinder
GATCTAATTTAGCCATAGTGGAATGTAAAT	CRT

57 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_013216_2

>merge|NC_013216|2|940048-943825|PILER-CR,CRISPRCasFinder,CRT
GATCTAATTTAGCCATAGTGGAATGTAAATAATTTGAGGCTGAATTTGCCGAAAAGAAGGCGCAAAGATCTAATTTAGCCATAGTGGAATGTAAATATGCTAGGTTTATAGGGTTTGCAATTTTAAACTCTGGATCTAATTTAGCCATAGTGGAATGTAAATTGCATATATTCGTTATCGTGAGCGTGGGGGTATGAAAAAGATCTAATTTAGCCATAGTGGAATGTAAATTACAGTGATATTATACATCTACGCCAGGATTATTAGATCTAATTTAGCCATAGTGGAATGTAAATCAGATTTAACTTGTGGTACTGTTTTATTTATGGTTCGATCTAATTTAGCCATAGTGGAATGTAAATAAAGTAAAAATCGGCCCGGATAAAAAGCACTGGTGGATCTAATTTAGCCATAGTGGAATGTAAATGGCTGTGTAAATGCCTCGTCCGTTCTCTCGGAAACAGATCTAATTTAGCCATAGTGGAATGTAAATAACTCAGTCATTATTAGTCCGTTACTTCCGGTCATGATCTAATTTAGCCATAGTGGAATGTAAATTGAAGGAAAATGTCATAACATTCACGGTCACAGGTGATCTAATTTAGCCATAGTGGAATGTAAATATAAGTCACATTCAGTTTGACAAACGAACTTAAGGATCTAATTTAGCCATAGTGGAATGTAAATTCGGCATAATGCTCTTTGACTACAACATGAATAAGGATCTAATTTAGCCATAGTGGAATGTAAATTTTGCTGGCGTTGGTGTTTGACTGGAGCACTTGATAGATCTAATTTAGCCATAGTGGAATGTAAATTCCACTGCCACGGTTGACTGAAAACCGTTACTGGCGATCTAATTTAGCCATAGTGGAATGTAAATAGTACTATTAAACGCATGATCAAATTGATGTGCAGGATCTAATTTAGCCATAGTGGAATGTAAATAATGATAACCACAAATACTAGCATTATCTGACTCAAGATCTAATTTAGCCATAGTGGAATGTAAATTAGCCTATCACATACAAATGGGGATTTTCAGCCATAGATCTAATTTAGCCATAGTGGAATGTAAATTAGCCTATCACATACAAATGGGGATTTTCAGCCATAGATCTAATTTAGCCATAGTGGAATGTAAATTTGCACAGTCGGAAGGGATACTGGCTTAGAGGCCAGGATCTAATTTAGCCATAGTGGAATGTAAATGTTTTTAATGCTACCAATTGACCTAGCGTATCCTGGGATCTAATTTAGCCATAGTGGAATGTAAATAAGAGTCAACCCTCTCACCAACACCTCAACCGGCAGGATCTAATTTAGCCATAGTGGAATGTAAATTATAACACCAGAAAGGAGGCAGAAGGGGCAATAACGATCTAATTTAGCCATAGTGGAATGTAAATAATGATGAACTTCGCATTTTTTATCTTTTTCACATAGATCTAATTTAGCCATAGTGGAATGTAAATTTTAAAATCACTCCTTTTAATCTTTCATTTCCTCTAGATCTAATTTAGCCATAGTGGAATGTAAATATTACTCTCAATCATGTCATGGATTGCAAGCAGTAGAGATCTAATTTAGCCATAGTGGAATGTAAATTCAATTAAAATAACAACCCAATCGTCTTCTAATTCTCGATCTAATTTAGCCATAGTGGAATGTAAATTTGCCGCTGCCAGTTCCTCAGGTCGCTCTCGAATGAGATCTAATTTAGCCATAGTGGAATGTAAATACTATTTGGCTGTCGTTTTCAAAAATAACCTTCTCCGATCTAATTTAGCCATAGTGGAATGTAAATTTAGCTTTTCTGATTTCACGAATTCTTGCACCAATGATCTAATTTAGCCATAGTGGAATGTAAATATAAAGATCGGGTCGATAATTTTTGGAGTCAATTTAAAGATCTAATTTAGCCATAGTGGAATGTAAATCCAGCAGATCCACCCACACCCCAAGGCGTTGCATAGGATCTAATTTAGCCATAGTGGAATGTAAATTATTTTTATAGACGAATTTCAGGACACTAGCGACGGATCTAATTTAGCCATAGTGGAATGTAAATGTGGAAGTGATTAACCGAGCTCCCGAAGACATAAAAGATCTAATTTAGCCATAGTGGAATGTAAATATTATTGTGGGCCAATGTTGAGGACGCGATAAACTTGGATCTAATTTAGCCATAGTGGAATGTAAATGAAGGTGTTGTTACTGGTAGAATAGGGAGTTTATATGATCTAATTTAGCCATAGTGGAATGTAAATTGCGAGGCAGTTATCATACGTAATTATCTCGGCAAGATCTAATTTAGCCATAGTGGAATGTAAATTCTTCCAGCACTGTCTTGCGTGAGTGGCATGAATGGATCTAATTTAGCCATAGTGGAATGTAAATTAGTAACTAATTGTTCAATATCAACAGCTTCACTAAGATCTAATTTAGCCATAGTGGAATGTAAATGTGCTTTTTGAAGTTGATCGCCCTTAAAGCCTGTAGCGATCTAATTTAGCCATAGTGGAATGTAAATGATCGCATTGTGCAGCATGCATTAATGAGATCAGGATCTAATTTAGCCATAGTGGAATGTAAATGAATAGATTAAGCCCGATGCGCTGATCGTCACCATAGATCTAATTTAGCCATAGTGGAATGTAAATTATGCGGTGGCAGCGATCTTCGGCCTGGATCCTTGATCTAATTTAGCCATAGTGGAATGTAAATGCGGTTTTTCAGTGCTGGTTACTCTGATTTTCCAGGGATCTAATTTAGCCATAGTGGAATGTAAATATGTTAAGGCGGTTTTTATCGTTGTATCATAATGACCGATCTAATTTAGCCATAGTGGAATGTAAATCTTGAAGCGGAACGCCTTATGAACATGCCGGATGGTGATCTAATTTAGCCATAGTGGAATGTAAATAGCATTTTTTCTCTTTCAATCTGCAGTCGGTCCGGGGATCTAATTTAGCCATAGTGGAATGTAAATGTAATTATTCAAACAGAAATTGAAAATAACATGGTAACGATCTAATTTAGCCATAGTGGAATGTAAATTACATGGTGCAATATGATACGGCGGTTATTGGGTGATCTAATTTAGCCATAGTGGAATGTAAATTTTATTAGCTGAACGATTAAGACCGTAAATAGTTGTGATCTAATTTAGCCATAGTGGAATGTAAATCCGTCTGCATCCGTAAGAGCTGTTTCACGTTTGTCGATCTAATTTAGCCATAGTGGAATGTAAATTCTATTTGTATTGCGATGTCGGCGGGTCTACCAGGGATCTAATTTAGCCATAGTGGAATGTAAATCCCCATATCTCTTTTTATATAATCCACCCCATATCGATCTAATTTAGCCATAGTGGAATGTAAATATCTTAAAGCCGTAGGCTTCTTGAATTCCGTTAGGGATCTAATTTAGCCATAGTGGAATGTAAATGTCAATTGACTGGGAAGCTCCTTGGGCTGTATTTAGATCTAATTTAGCCATAGTGGAATGTAAAGATATCCATTACCGCAAGTTACTCCGCTTATTCCGGTGATCTAATTTAGCCATAGTGGAATGTAAAGCCGGATCCAAGTCACCGGCATCCACCCGCAAATCAAGATCTAATTTAGCCATAGTGGAATGTAAAGCCTCCCAAGGGCAGCAGGGATAAACCGTTTCGCGAGATCTAATTTAGCCATAGTGGAATGTAAAGCTTCTTTGGTGTAATAGTTTATCGGCATCACACCGGGATCTAATTTAGCCATAGTGGAATGTAAAG

>NC_013216|2|2|940048-943824|PILER-CR
GATCTAATTTAGCCATAGTGGAATGTAAA	TAATTTGAGGCTGAATTTGCCGAAAAGAAGGCGCAAA
GATCTAATTTAGCCATAGTGGAATGTAAA	TATGCTAGGTTTATAGGGTTTGCAATTTTAAACTCTG
GATCTAATTTAGCCATAGTGGAATGTAAA	TTGCATATATTCGTTATCGTGAGCGTGGGGGTATGAAAAA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTACAGTGATATTATACATCTACGCCAGGATTATTA
GATCTAATTTAGCCATAGTGGAATGTAAA	TCAGATTTAACTTGTGGTACTGTTTTATTTATGGTTC
GATCTAATTTAGCCATAGTGGAATGTAAA	TAAAGTAAAAATCGGCCCGGATAAAAAGCACTGGTG
GATCTAATTTAGCCATAGTGGAATGTAAA	TGGCTGTGTAAATGCCTCGTCCGTTCTCTCGGAAACA
GATCTAATTTAGCCATAGTGGAATGTAAA	TAACTCAGTCATTATTAGTCCGTTACTTCCGGTCAT
GATCTAATTTAGCCATAGTGGAATGTAAA	TTGAAGGAAAATGTCATAACATTCACGGTCACAGGT
GATCTAATTTAGCCATAGTGGAATGTAAA	TATAAGTCACATTCAGTTTGACAAACGAACTTAAG
GATCTAATTTAGCCATAGTGGAATGTAAA	TTCGGCATAATGCTCTTTGACTACAACATGAATAAG
GATCTAATTTAGCCATAGTGGAATGTAAA	TTTTGCTGGCGTTGGTGTTTGACTGGAGCACTTGATA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTCCACTGCCACGGTTGACTGAAAACCGTTACTGGC
GATCTAATTTAGCCATAGTGGAATGTAAA	TAGTACTATTAAACGCATGATCAAATTGATGTGCAG
GATCTAATTTAGCCATAGTGGAATGTAAA	TAATGATAACCACAAATACTAGCATTATCTGACTCAA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTAGCCTATCACATACAAATGGGGATTTTCAGCCATA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTAGCCTATCACATACAAATGGGGATTTTCAGCCATA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTTGCACAGTCGGAAGGGATACTGGCTTAGAGGCCAG
GATCTAATTTAGCCATAGTGGAATGTAAA	TGTTTTTAATGCTACCAATTGACCTAGCGTATCCTGG
GATCTAATTTAGCCATAGTGGAATGTAAA	TAAGAGTCAACCCTCTCACCAACACCTCAACCGGCAG
GATCTAATTTAGCCATAGTGGAATGTAAA	TTATAACACCAGAAAGGAGGCAGAAGGGGCAATAAC
GATCTAATTTAGCCATAGTGGAATGTAAA	TAATGATGAACTTCGCATTTTTTATCTTTTTCACATA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTTTAAAATCACTCCTTTTAATCTTTCATTTCCTCTA
GATCTAATTTAGCCATAGTGGAATGTAAA	TATTACTCTCAATCATGTCATGGATTGCAAGCAGTAGA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTCAATTAAAATAACAACCCAATCGTCTTCTAATTCTC
GATCTAATTTAGCCATAGTGGAATGTAAA	TTTGCCGCTGCCAGTTCCTCAGGTCGCTCTCGAATGA
GATCTAATTTAGCCATAGTGGAATGTAAA	TACTATTTGGCTGTCGTTTTCAAAAATAACCTTCTCC
GATCTAATTTAGCCATAGTGGAATGTAAA	TTTAGCTTTTCTGATTTCACGAATTCTTGCACCAAT
GATCTAATTTAGCCATAGTGGAATGTAAA	TATAAAGATCGGGTCGATAATTTTTGGAGTCAATTTAAA
GATCTAATTTAGCCATAGTGGAATGTAAA	TCCAGCAGATCCACCCACACCCCAAGGCGTTGCATAG
GATCTAATTTAGCCATAGTGGAATGTAAA	TTATTTTTATAGACGAATTTCAGGACACTAGCGACG
GATCTAATTTAGCCATAGTGGAATGTAAA	TGTGGAAGTGATTAACCGAGCTCCCGAAGACATAAAA
GATCTAATTTAGCCATAGTGGAATGTAAA	TATTATTGTGGGCCAATGTTGAGGACGCGATAAACTTG
GATCTAATTTAGCCATAGTGGAATGTAAA	TGAAGGTGTTGTTACTGGTAGAATAGGGAGTTTATAT
GATCTAATTTAGCCATAGTGGAATGTAAA	TTGCGAGGCAGTTATCATACGTAATTATCTCGGCAA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTCTTCCAGCACTGTCTTGCGTGAGTGGCATGAATG
GATCTAATTTAGCCATAGTGGAATGTAAA	TTAGTAACTAATTGTTCAATATCAACAGCTTCACTAA
GATCTAATTTAGCCATAGTGGAATGTAAA	TGTGCTTTTTGAAGTTGATCGCCCTTAAAGCCTGTAGC
GATCTAATTTAGCCATAGTGGAATGTAAA	TGATCGCATTGTGCAGCATGCATTAATGAGATCAG
GATCTAATTTAGCCATAGTGGAATGTAAA	TGAATAGATTAAGCCCGATGCGCTGATCGTCACCATA
GATCTAATTTAGCCATAGTGGAATGTAAA	TTATGCGGTGGCAGCGATCTTCGGCCTGGATCCTT
GATCTAATTTAGCCATAGTGGAATGTAAA	TGCGGTTTTTCAGTGCTGGTTACTCTGATTTTCCAGG
GATCTAATTTAGCCATAGTGGAATGTAAA	TATGTTAAGGCGGTTTTTATCGTTGTATCATAATGACC
GATCTAATTTAGCCATAGTGGAATGTAAA	TCTTGAAGCGGAACGCCTTATGAACATGCCGGATGGT
GATCTAATTTAGCCATAGTGGAATGTAAA	TAGCATTTTTTCTCTTTCAATCTGCAGTCGGTCCGGG
GATCTAATTTAGCCATAGTGGAATGTAAA	TGTAATTATTCAAACAGAAATTGAAAATAACATGGTAAC
GATCTAATTTAGCCATAGTGGAATGTAAA	TTACATGGTGCAATATGATACGGCGGTTATTGGGT
GATCTAATTTAGCCATAGTGGAATGTAAA	TTTTATTAGCTGAACGATTAAGACCGTAAATAGTTGT
GATCTAATTTAGCCATAGTGGAATGTAAA	TCCGTCTGCATCCGTAAGAGCTGTTTCACGTTTGTC
GATCTAATTTAGCCATAGTGGAATGTAAA	TTCTATTTGTATTGCGATGTCGGCGGGTCTACCAGG
GATCTAATTTAGCCATAGTGGAATGTAAA	TCCCCATATCTCTTTTTATATAATCCACCCCATATC
GATCTAATTTAGCCATAGTGGAATGTAAA	TATCTTAAAGCCGTAGGCTTCTTGAATTCCGTTAGG
GATCTAATTTAGCCATAGTGGAATGTAAA	TGTCAATTGACTGGGAAGCTCCTTGGGCTGTATTTA
GATCTAATTTAGCCATAGTGGAATGTAAA	GATATCCATTACCGCAAGTTACTCCGCTTATTCCGGT
GATCTAATTTAGCCATAGTGGAATGTAAA	GCCGGATCCAAGTCACCGGCATCCACCCGCAAATCAA
GATCTAATTTAGCCATAGTGGAATGTAAA	GCCTCCCAAGGGCAGCAGGGATAAACCGTTTCGCGA
GATCTAATTTAGCCATAGTGGAATGTAAA	GCTTCTTTGGTGTAATAGTTTATCGGCATCACACCGG
GATCTAATTTAGCCATAGTGGAATGTAAA

>NC_013216|2|2|940048-943825|CRISPRCasFinder
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATTTGAGGCTGAATTTGCCGAAAAGAAGGCGCAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGCTAGGTTTATAGGGTTTGCAATTTTAAACTCTG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGCATATATTCGTTATCGTGAGCGTGGGGGTATGAAAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TACAGTGATATTATACATCTACGCCAGGATTATTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAGATTTAACTTGTGGTACTGTTTTATTTATGGTTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAGTAAAAATCGGCCCGGATAAAAAGCACTGGTG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGCTGTGTAAATGCCTCGTCCGTTCTCTCGGAAACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AACTCAGTCATTATTAGTCCGTTACTTCCGGTCAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAAGGAAAATGTCATAACATTCACGGTCACAGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATAAGTCACATTCAGTTTGACAAACGAACTTAAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCGGCATAATGCTCTTTGACTACAACATGAATAAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTGCTGGCGTTGGTGTTTGACTGGAGCACTTGATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCCACTGCCACGGTTGACTGAAAACCGTTACTGGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AGTACTATTAAACGCATGATCAAATTGATGTGCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATGATAACCACAAATACTAGCATTATCTGACTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAGCCTATCACATACAAATGGGGATTTTCAGCCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAGCCTATCACATACAAATGGGGATTTTCAGCCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTGCACAGTCGGAAGGGATACTGGCTTAGAGGCCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTTTTTAATGCTACCAATTGACCTAGCGTATCCTGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGAGTCAACCCTCTCACCAACACCTCAACCGGCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATAACACCAGAAAGGAGGCAGAAGGGGCAATAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATGATGAACTTCGCATTTTTTATCTTTTTCACATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTAAAATCACTCCTTTTAATCTTTCATTTCCTCTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATTACTCTCAATCATGTCATGGATTGCAAGCAGTAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCAATTAAAATAACAACCCAATCGTCTTCTAATTCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTGCCGCTGCCAGTTCCTCAGGTCGCTCTCGAATGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACTATTTGGCTGTCGTTTTCAAAAATAACCTTCTCC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTAGCTTTTCTGATTTCACGAATTCTTGCACCAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATAAAGATCGGGTCGATAATTTTTGGAGTCAATTTAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCAGCAGATCCACCCACACCCCAAGGCGTTGCATAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTTTATAGACGAATTTCAGGACACTAGCGACG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTGGAAGTGATTAACCGAGCTCCCGAAGACATAAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATTATTGTGGGCCAATGTTGAGGACGCGATAAACTTG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAAGGTGTTGTTACTGGTAGAATAGGGAGTTTATAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGCGAGGCAGTTATCATACGTAATTATCTCGGCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCTTCCAGCACTGTCTTGCGTGAGTGGCATGAATG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAGTAACTAATTGTTCAATATCAACAGCTTCACTAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTGCTTTTTGAAGTTGATCGCCCTTAAAGCCTGTAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATCGCATTGTGCAGCATGCATTAATGAGATCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAATAGATTAAGCCCGATGCGCTGATCGTCACCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGCGGTGGCAGCGATCTTCGGCCTGGATCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCGGTTTTTCAGTGCTGGTTACTCTGATTTTCCAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGTTAAGGCGGTTTTTATCGTTGTATCATAATGACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CTTGAAGCGGAACGCCTTATGAACATGCCGGATGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AGCATTTTTTCTCTTTCAATCTGCAGTCGGTCCGGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAATTATTCAAACAGAAATTGAAAATAACATGGTAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TACATGGTGCAATATGATACGGCGGTTATTGGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTATTAGCTGAACGATTAAGACCGTAAATAGTTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCGTCTGCATCCGTAAGAGCTGTTTCACGTTTGTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCTATTTGTATTGCGATGTCGGCGGGTCTACCAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCCCATATCTCTTTTTATATAATCCACCCCATATC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATCTTAAAGCCGTAGGCTTCTTGAATTCCGTTAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTCAATTGACTGGGAAGCTCCTTGGGCTGTATTTA
GATCTAATTTAGCCATAGTGGAATGTAAAG	ATATCCATTACCGCAAGTTACTCCGCTTATTCCGGT
GATCTAATTTAGCCATAGTGGAATGTAAAG	CCGGATCCAAGTCACCGGCATCCACCCGCAAATCAA
GATCTAATTTAGCCATAGTGGAATGTAAAG	CCTCCCAAGGGCAGCAGGGATAAACCGTTTCGCGA
GATCTAATTTAGCCATAGTGGAATGTAAAG	CTTCTTTGGTGTAATAGTTTATCGGCATCACACCGG
GATCTAATTTAGCCATAGTGGAATGTAAAG

>NC_013216|2|2|940048-943825|CRT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATTTGAGGCTGAATTTGCCGAAAAGAAGGCGCAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGCTAGGTTTATAGGGTTTGCAATTTTAAACTCTG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGCATATATTCGTTATCGTGAGCGTGGGGGTATGAAAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TACAGTGATATTATACATCTACGCCAGGATTATTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CAGATTTAACTTGTGGTACTGTTTTATTTATGGTTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAAGTAAAAATCGGCCCGGATAAAAAGCACTGGTG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GGCTGTGTAAATGCCTCGTCCGTTCTCTCGGAAACA
GATCTAATTTAGCCATAGTGGAATGTAAAT	AACTCAGTCATTATTAGTCCGTTACTTCCGGTCAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGAAGGAAAATGTCATAACATTCACGGTCACAGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATAAGTCACATTCAGTTTGACAAACGAACTTAAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCGGCATAATGCTCTTTGACTACAACATGAATAAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTGCTGGCGTTGGTGTTTGACTGGAGCACTTGATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCCACTGCCACGGTTGACTGAAAACCGTTACTGGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AGTACTATTAAACGCATGATCAAATTGATGTGCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATGATAACCACAAATACTAGCATTATCTGACTCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAGCCTATCACATACAAATGGGGATTTTCAGCCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAGCCTATCACATACAAATGGGGATTTTCAGCCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTGCACAGTCGGAAGGGATACTGGCTTAGAGGCCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTTTTTAATGCTACCAATTGACCTAGCGTATCCTGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	AAGAGTCAACCCTCTCACCAACACCTCAACCGGCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATAACACCAGAAAGGAGGCAGAAGGGGCAATAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	AATGATGAACTTCGCATTTTTTATCTTTTTCACATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTAAAATCACTCCTTTTAATCTTTCATTTCCTCTA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATTACTCTCAATCATGTCATGGATTGCAAGCAGTAGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCAATTAAAATAACAACCCAATCGTCTTCTAATTCTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTGCCGCTGCCAGTTCCTCAGGTCGCTCTCGAATGA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ACTATTTGGCTGTCGTTTTCAAAAATAACCTTCTCC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTAGCTTTTCTGATTTCACGAATTCTTGCACCAAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATAAAGATCGGGTCGATAATTTTTGGAGTCAATTTAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCAGCAGATCCACCCACACCCCAAGGCGTTGCATAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATTTTTATAGACGAATTTCAGGACACTAGCGACG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTGGAAGTGATTAACCGAGCTCCCGAAGACATAAAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATTATTGTGGGCCAATGTTGAGGACGCGATAAACTTG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAAGGTGTTGTTACTGGTAGAATAGGGAGTTTATAT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TGCGAGGCAGTTATCATACGTAATTATCTCGGCAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCTTCCAGCACTGTCTTGCGTGAGTGGCATGAATG
GATCTAATTTAGCCATAGTGGAATGTAAAT	TAGTAACTAATTGTTCAATATCAACAGCTTCACTAA
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTGCTTTTTGAAGTTGATCGCCCTTAAAGCCTGTAGC
GATCTAATTTAGCCATAGTGGAATGTAAAT	GATCGCATTGTGCAGCATGCATTAATGAGATCAG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GAATAGATTAAGCCCGATGCGCTGATCGTCACCATA
GATCTAATTTAGCCATAGTGGAATGTAAAT	TATGCGGTGGCAGCGATCTTCGGCCTGGATCCTT
GATCTAATTTAGCCATAGTGGAATGTAAAT	GCGGTTTTTCAGTGCTGGTTACTCTGATTTTCCAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATGTTAAGGCGGTTTTTATCGTTGTATCATAATGACC
GATCTAATTTAGCCATAGTGGAATGTAAAT	CTTGAAGCGGAACGCCTTATGAACATGCCGGATGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	AGCATTTTTTCTCTTTCAATCTGCAGTCGGTCCGGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTAATTATTCAAACAGAAATTGAAAATAACATGGTAAC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TACATGGTGCAATATGATACGGCGGTTATTGGGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	TTTATTAGCTGAACGATTAAGACCGTAAATAGTTGT
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCGTCTGCATCCGTAAGAGCTGTTTCACGTTTGTC
GATCTAATTTAGCCATAGTGGAATGTAAAT	TCTATTTGTATTGCGATGTCGGCGGGTCTACCAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	CCCCATATCTCTTTTTATATAATCCACCCCATATC
GATCTAATTTAGCCATAGTGGAATGTAAAT	ATCTTAAAGCCGTAGGCTTCTTGAATTCCGTTAGG
GATCTAATTTAGCCATAGTGGAATGTAAAT	GTCAATTGACTGGGAAGCTCCTTGGGCTGTATTTA
GATCTAATTTAGCCATAGTGGAATGTAAAG	ATATCCATTACCGCAAGTTACTCCGCTTATTCCGGT
GATCTAATTTAGCCATAGTGGAATGTAAAG	CCGGATCCAAGTCACCGGCATCCACCCGCAAATCAA
GATCTAATTTAGCCATAGTGGAATGTAAAG	CCTCCCAAGGGCAGCAGGGATAAACCGTTTCGCGA
GATCTAATTTAGCCATAGTGGAATGTAAAG	CTTCTTTGGTGTAATAGTTTATCGGCATCACACCGG
GATCTAATTTAGCCATAGTGGAATGTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015756532.1\|944479_946597_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NC_013216.1\|WP_015756538.1\|952764_953007_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
NC_013216.1\|WP_157863061.1\|927976_930226_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_013216.1\|WP_083773365.1\|943910_944069_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271188
NC_013216.1\|WP_015756540.1\|953491_953827_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NC_013216.1\|WP_015756537.1\|951809_952694_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NC_013216.1\|WP_015756525.1\|926368_927241_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_013216.1\|WP_042315396.1\|923926_924661_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187783
NC_013216.1\|WP_015756522.1\|922809_923634_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|181535
NC_013216.1\|WP_015756530.1\|931750_932029_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013216.1\|WP_015756528.1\|930255_930744_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_013216.1\|WP_015756524.1\|924673_926365_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NC_013216.1\|WP_015756529.1\|930755_931748_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_013216.1\|WP_015756115.1\|938140_939955_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NC_013216.1\|WP_042315405.1\|950147_951785_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NC_013216.1\|WP_015756533.1\|946611_947865_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015756539.1\|953003_953504_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_013216.1\|WP_015756535.1\|949105_950155_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015756526.1\|927227_927980_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
NC_013216.1\|WP_015756534.1\|947869_949003_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235064

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015756532.1\|944479_946597_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	3.05255e-55
NC_013216.1\|WP_015756538.1\|952764_953007_+\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	2.28893e-06
NC_013216.1\|WP_157863061.1\|927976_930226_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	5.97626e-62
NC_013216.1\|WP_083773365.1\|943910_944069_-\|hypothetical-protein	gnl\|CDD\|271188	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio. Recombinases RitA (also known as pAE1), RitB, and RitC are encoded by three adjacent and overlapping genes. Collectively they are known as the Recombinase in Trio (RIT). This RitA family includes various bacterial integrases and integrases from the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1. All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.72466e-06
NC_013216.1\|WP_015756540.1\|953491_953827_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.77049e-26
NC_013216.1\|WP_015756537.1\|951809_952694_+\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	5.94355e-42
NC_013216.1\|WP_015756525.1\|926368_927241_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.5475e-51
NC_013216.1\|WP_042315396.1\|923926_924661_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	2.87283e-24
NC_013216.1\|WP_015756522.1\|922809_923634_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	1.45864e-175
NC_013216.1\|WP_015756530.1\|931750_932029_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.08167e-27
NC_013216.1\|WP_015756528.1\|930255_930744_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.66291e-58
NC_013216.1\|WP_015756524.1\|924673_926365_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	1.92793e-18
NC_013216.1\|WP_015756529.1\|930755_931748_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.92633e-160
NC_013216.1\|WP_015756115.1\|938140_939955_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.72605e-11
NC_013216.1\|WP_042315405.1\|950147_951785_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NC_013216.1\|WP_015756539.1\|953003_953504_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.45745e-17
NC_013216.1\|WP_015756526.1\|927227_927980_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.68394e-22
NC_013216.1\|WP_015756534.1\|947869_949003_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235064	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated.	1.11071e-114

>NC_013216.1|WP_015756115.1|938140_939955_+|IS1634-family-transposase
MDLQPILEQLAKLPPEILMKIMPELKVEVPKADPSGAVLIGVFLARSLGIGKIIDNFIGEEYVTYEHLREDRANGSKCRVSTGLACEIMVGDMLGRNKDLTRLYKFEEACENWQVETILGIPSEKFNDDKMGRALDAINSNAKYMANVLQDIVLSASKKFGVPLNTFYNDTSSIPVSGVMEDNDKVQYGYGGLPGLKQLILNLTIASGASLPVTSSIDSGNVQGGTTFERSFEKVKEITDDQEFEMIIDRGILTQDNMHLMLTNSNQKAFFIGPLKDELSKNWVLEQLNEAKKDDFAAIDYRSKKEIERNLPRHYEALETKYTFKVKLEPPSEGSKNKKQLKKSKRIFATHTIRAVIYCDLNKKPKEQERRQKRITSTEDALVELNGKLNKRNLITKEACEKAVDNIFKGQPEMRRLFNVTIKLNQHNAIVMSWSKDEAIIPELEKTDGIFVLLTNHDKEKVDANELLTRYRGRNDIEISFRFLKGSLDLQQVFLRNPERVDAYCFLKVLAMLVLNLAAWLLAKNGKKMSPQKLQRELGDLTISEQRLQPIGIHHWNGTNIPNTIDVLVNLFNLPHPLELIEVINSAINFSYHIEKWFKDNFRK
>NC_013216.1|WP_015756530.1|931750_932029_+|CRISPR-associated-endonuclease-Cas2
MYIILVYDIEMDEGGAKASRRVFKTCKKYLTHIQKSVFEGDITPSLLQKLRIELDKFIRKDRDSVLVFKSREERWLQKEFWGKEDDKTSNFF
>NC_013216.1|WP_015756529.1|930755_931748_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MAESFYLFSNGELQRKDNVLRITASDGRYKDIKVEMTQDIYLFGEVDLNTKCLNYAGQLSIPIHIFNYYGSYTGSFYPKEKNVSGKLLIEQVNHYTDKYKRLEIAKAFIEAASYNILRNLRYYSERGRDLQACMTEIKGLRKVIPRTEDINELMGIEGCIRQAYYNSWKDIINQEVDFEKRVKRPPDNMINALISFVNSLIYATCLTEIYKTQLHPTVSYLHSAGERRFSLCLDISEIFKPLIGDRLIFSMLNKNMLTEKDFESQSNFCYLKDNGRKRLLQKYDEDLKRTIRHKVLNKNVSYRYLIRLECYKLIKHLMSDKKYEGFTIWW
>NC_013216.1|WP_015756528.1|930255_930744_+|CRISPR-associated-protein-Cas4
MHITGTMFYYYFVCHRKLWCFYNYINYENESEKVILGKLIDESAYGREHKHIMIDQTVNVDFIKDWQVLHEIKKSRSIEEASIWQVKYYLYFLNQRGIKIEKGILDYPKIKKRREVVLQEGDSEKIEEILISIEKILLQEKMPPPIESKICKSCAYYEYCYI
>NC_013216.1|WP_157863061.1|927976_930226_+|CRISPR-associated-helicase-Cas3'
MGGFSLDENALAKSAPKEDIQTHTDNLLKNVNLLKELYPNLKVDWGLLHWACVYHDLGKLHFKFQDRIKGIKHHPGEIPHGLLSLAMIDHKALKNMGYDRNAIKLLYQAVAYHHDRKMPFQNEEIEKEFAGLYPNFASFEYDKLPEKLKIATEINQRYFSVNKRFYEERDKDLFFEFIMLEGLLNRMDYAASAGIPVETPNDFLSASMDELMCSWQEVDENTNWNDLQIYMRNKPDKNLIVIAQTGMGKTEAGLLWLGNAKGFFTLPLKSAINAIYKRISEKIVREKMDERVGLLHSDTYIKYLEQGEKDESISLDTYYTKTRQLSLPLTICTLDQLFNFVFRYRGFEQKLATLSYSKVIIDEVQMYSPELIAYLVLGLHYITRMEGKFAILTATLPTLFLDLLREQDIIFEPAQIFTNDIIRHSLKVLDEDINSKDIVDISKQYGGKKILVICNTIKSALKLYHQLAQVAGKQQVWLLHSHFTKEDRSIKESHIMEMGKRENTQCGIWVATQIVEASLDIDFDLLFTELSDLNGLFQRMGRCYRNRILDMEYNCFVFTGGNKRCSGVGAFIDKKVHNCSKESLVGIDGIITEGQKIAMVEELYTKEKLSDYYRNIKENIDYVKSINEYEFSKTDVNNKFRSIDTVSVIPRGVYNKYPVEINEAINILKADYSGVDKSEARVHRASARRIIAEQTVDIPFYLAQKIILKKIYINAYEQLSIAECEYNSQEGIIKPDMKTGGEDFSSHSF
>NC_013216.1|WP_015756526.1|927227_927980_+|type-I-B-CRISPR-associated-protein-Cas5
MKAIRLRLWQDMVNYKKPTSFQLKETYPLPPYSTIIGMVHSLCGYEEYKSMKVSVQGKYFSKVNDLYTRYEFKNAMKYELARHQIQVGEYGICQGVATAELLVDVELLIHIAPEDQTLVDEIYDAFIRPREYPSLGRREDILTIEEVKLVTLTETELEQQIKSLDGYYAYIPYEMVRDERVNLTNNVTGVTYTGTRYKLTKNYELVNYGSKKVPKLFRRWNKVDVVYASVTALAEETFMIDEDNFVAFMV
>NC_013216.1|WP_015756525.1|926368_927241_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKIKGLTITIIFQAESANYGESVGNVASLKKISRGQGDQYTYISRQALRYNITEQLGEDLAPVKAEGSGDKKVVQFSEEATIDKYPEIDFFGYLKTEKGTAGKKRSAKVRLSNAISLESFKGDLDFLTNKGQADKIKENMNIAQAEIHRSYYRYTIAADLEQIGEDKEYGIILENGERARRVKRLLDTVAFLYRDIRGRREDLKPLFAIGGVYDIKNPVFQNVVNAKNNCIDVAEIKGVLYDSIKPDTFCGVVDRSFDNTNELKEQLHALSMPEFFTLLKQKVDMYYESN
>NC_013216.1|WP_015756524.1|924673_926365_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MKSDKIRLTLGDWQWNASVIGFINIVGEENVCHIEADTVEFWPEALDGFENKYFAYFINTYEKTLSWYKIVNFQDRLNTYEENNFEEFDLKALEFLNVYIKDVKRYIKSNSYKAAYELIDSEVELLSFEKQLITIKEPKNQQRFDVDKSEIVNEVKRRFLLLQQIINYCASSEGRRYIGAKNAIYNIINNAWNGVSFLNSQTKEKNIYSDYKSYFVDTATGYLQSEKGKYKYNCFVCDAPIKDMSNDLSFLNATGFDVARKSSHVWNFQNDITICPLCKLIYSCLPAGIIYTYNRGIYINQTIKLKDAVRINNKIKSRILRSQDGSMRPIYHALVSVLHEQENDSAKYELADVQVVRYENESYRFNILAKPMLQIIVNSKKELDSLIRVNFIENGRNINVYDEVIGRIFNNQNLFTLIHKMLYGKLSDASKCYFNGSHVRNVLIINQLICSRLGGMKMDNTYLVKKSREAGESLRNKYFNKDSNHKLAGICYRLLNALKTTNENMFMDVTLNCYLYVNSQVPKVITDALGRGKDFSTMGYAFVSGLIDGQDGSGNKEKKAEGE
>NC_013216.1|WP_042315396.1|923926_924661_+|CRISPR-associated-endoribonuclease-Cas6
MRIKVDIETGSMELPIDYRRKFLSYIKSAFEDYNQELYTELYEMGSSPKSFCFSIYFLPEVEIGKEEIILRSKRFTAWFTTPDILMGVHLINALMARRNKWFPLADCDNKLRTLSINNVQERPITANTALFRILSPIVIRDHDNKEMKKDWYYTYEDSEFEIIWKRNLKAELKNKFGRDVSSDINELQIKPIKLRKTVVRNYDIYIPCTIGNFILEGERYLLEYIYKAGIGSRRSLGFGCLDIV
>NC_013216.1|WP_015756522.1|922809_923634_+|3-deoxy-7-phosphoheptulonate-synthase
MPQCKLYSREHQKDSTVVKVGDVSIGDGTVVVIAGPCSVENREQLVGLSVQIKEMGVNVLRGGAFKPRTSPYDFQGLGLEGLKILAEAREASGLPVITEVMDIRQMDLVCRYADIIQIGSRNMQNTPLLREAGKTDKPVMLKRGLSSTLEEWLLAAEYILMNGNKQVILCERGIRSFETYTRNTFDINAIPAIKHLSHLPLIADPSHGTGRRELVGPVATAALAAGADGIMIEVHPDPSKALSDGAQSLRPQEFKDMMNGLRNFRLLFDKKVSA
>NC_013216.1|WP_083773365.1|943910_944069_-|hypothetical-protein
MLKSKTNVDTIANSLGHSDTSTVLKYLATDGDTMRQCALSLKGIEVKGGMLS
>NC_013216.1|WP_015756532.1|944479_946597_+|SpoIIE-family-protein-phosphatase
MNQLVLKFGIRNKLLLLVLGISLVSLLIFAYISYDAMKKLGNYAVESSAKLGTSAANDSQNALEKQTGEYILRVAKDQADISDKMLQHVKDNINEMAEYAAALWNNPNAFVSNPPLSLIDAGTRVRVPYYLEVPGAIDPAAMKKELGLLGNMKYIFSPILSNNLNISVVSIGTPSGITVLFSNSPPFDNKGFDPRVRPWYQKAMKQKDVIWTEPYEDAFGGGLMVTCAKACYTKKGQFVGVVSADVTLNALKEQIINTQIGNMGYALLMDEKGEFIVSPETGLEHEKWNTSLINTVIERKTGVELNSFGYENKYVAYAPVSSTNWILAVIMPQNEIIKPIVETKHKIAASTRKSNEYITDSIKSVLTRFAVMLVIMLSIIIFLAVRLSDKMVKPLLALSNGVKIVGGGNLEYNLAVHTKDEIEDLAAAFNKMTFDLNTYIKNLEETTAEKERIESELKIAHAIQNSMLPRIFPPFPERKEINIFASMEPAKEVGGDFYDFFFIDQHKLCFVIADVSGKGVPAALFMVITKTLIKNHALLGLPADEIMTVVNDMLCEDNDENMFVTAFLAILDVHTGSLTFANAGHNYPLLCRNGGEYDWLTSKKSFVLGGLENIEYQLNELVLDQGDKLFIYTDGITEAMDDEERLYSEMRLQKTVNRLKDFAEAELVEGIKKDIREHVKGMSQSDDITMLVLRYNGCENNATVL
>NC_013216.1|WP_015756533.1|946611_947865_+|hypothetical-protein
MQCRRATLSIPADVNLTQVVTGFVEKAGNAFGLMKRECLAITLAAEEVFAFIAGTGTSNNEIQIVCRNGGYYVEMSFQLKSCILPVDAFNLTKSGVTGDMEGAEQLGLILAARTVDRLSVDRLGRDTFILRFVMDKRYPLVEPAALPELSGRFNVQEADISSLKELSARILSCYGNAVDSFLTVPGKLIDMAASGDYDALVSINKKGQVGGGIVFSRNRQMSEAYGPYVFGKEDGLPQMLVEGMIEKLGRAKDTLCLVIMKPTPQTPSEYFEPLQGSAVYRQLSDDNGARIFTHSCFKVFLQDFYENLVLPRVIQDVEYTGEELAQYSALATAIDRQSKRSELTLLWAGQNLEENLRAHVELLQTQNIEDISFLMQLGSSDEVMMAPMVLSAGFEPWMVLPWARQGDVAIFKYKRRK
>NC_013216.1|WP_015756534.1|947869_949003_+|histidinol-phosphate-transaminase
MSGRFPALETLVPPYIQRFEAYIPSKPDAVLKEMFGCNHLLRLNNNENAFGPSPAALEAIKSFNSASASIYPSGDAYFLRQRLGEATEHSSEAFIVGNGANEVIAFVIKAFCCEGDNIITADKTFAVYEWVAEFSGFEARLVPLVDYRFDPDAMLARMDGRTKIIFICNPNNPTGSYWNESLLQQFLDRVDGKCIVVLDEAYAEFIEKSDFPDGLSLIRKYPNLIVFRTFSKMFGLAALRIGYLVSNPKLADIIRRTSICYSVNMLAQVAAEASLRDAAFQISRTRAMINSSRKYICGELDRLGLSYIAGEGNFLMIRVPMSDTSVYRRLMQHGVMVRTMTAFRFPNYIRLTLAKLPAMEEFVNAMEILLKKRVGIQ
>NC_013216.1|WP_015756535.1|949105_950155_+|hypothetical-protein
MDLQEEKSVHEQSWVIDLFKPEDAEGVVGLYRAIYGEYFPLPDIYIADWHREQVQNNDSYRVVARLPSGRLIGTVALFRSVPTNNELYEGGGLMVLKEYQTQNVAIQLVRFVCNSLPKMHNLGQIWGEAVCNHLVSQMLSIKNGHIACALEVDMMPEAAYEKLSERGQNINSRVSALVVFKAFDPDSQVVYLPLAYEDALKKLYAPFNFGHKFLRPDSNLEDGSNTGANINTMPGAGITRITVSQIGIDFASWLDRTHNELKNSGSKVYQVIIPLNTPLVDKAAENLRNEGYWLGGLLPRWFGHDGFLMQKTLYEPDFSKIKVYSKQGKEVLAMVKADYEKKLGCETNV
>NC_013216.1|WP_042315405.1|950147_951785_+|AMP-binding-protein
MFNVEGATLWDLLEYNASVRENNSALLFPSKDVDLSYGQLWAQANAVAKGLMSLGIQQGEHIAIWSPNSPEWLALEYGSAAVGTPLVMINTSYRMLEMEFALKQMDVVALFIADKQSTANDYIETIGILCPGLLEKPSGEWNSDRFPKLRYVIGLGEKRLPGMLMWSDIIKAAEKTEDSAFLKRKLKVKADATAFIMFTSGTTGEPKGAMISHENILITMRSLKEYLNLTESDRICLPIPFFHAFRLGMSNLAAQIGIASVICEQNQANQIVQDIQKTGVSLLCGTPTMFIGWMEALENLKNDGSSLSKAVLAGASLYTETVNRILERTTIKEIWDIYGTTETMVVFGNRISHRQELEFTSAGKLMQGGEVKIVEAAGERVSAAGETGELLIRGPGVMKGYYNRPEATEKAINIEGWYRSGDMAVIDTDGGISIVGRIKEMLVRGGENIFPREIEEYLMTHPKVKEAQVVGIPSEYYGEEPVAFIILQEGETATQIELKKYCRERIAYFKVPVYVYFVDSFPKTASGRVQKFKLKEQAIKKVAFK
>NC_013216.1|WP_015756537.1|951809_952694_+|4'-phosphopantetheinyl-transferase-superfamily-protein
MFAGNYVNTIFYYWCGWPADPELLLGGIGAPLVRDRRFADAKAALGKETKSPYTRSGLEYTEMRWEMRVYAAKLTAGVSDFDLDRIASRLTPERQERIRKFVSKEDARRSVLAELMLRQIILESLGLSGKEISFGANSYGKPFLVGIGDFHFNLSHSGEWVVCVTDNAPVGIDIEMIRPVEYNIARKFFLPAEYGDLMAKNEAERLHYFFSLWTLKESYIKARGEGFARPLDSFSIRIDEGGNVRLETEDMPGGWFFKRYGIDYRYKMAVCAAHGGLPEAVIVQDWHDYLGTAF
>NC_013216.1|WP_015756538.1|952764_953007_+|acyl-carrier-protein
MNRQTVLEELMLIVKNQLGDRAKSINYDFNVSQINLDSLDISIIIAAVEEKYDCTIRMDDFIKLKTLHDFANYILNEVKQ
>NC_013216.1|WP_015756539.1|953003_953504_+|MFS-transporter
MKNHPLIACSDFRKYFLGRSISAVGDKFYTIALAWWVLSQGENSGVLLGILMASSILPVVLFGPMAGTLADRMNRKKCMLIADGARFFFISVLFILCMFDWLSLPLLYLLVFLGFPLTFILNGFLLNMFSLQQLLIFNGIAVLIVNFGFLVIPKYRFPGGDILCKL
>NC_013216.1|WP_015756540.1|953491_953827_+|STAS-domain-containing-protein
MQIIERNEDGFCILEVIGRLDTVSASEFDQKIAALLENHKADMIFDLAKLDYISSIGLRSILAVTKKLRAGGRKLALCALTDFVKEVFEVSGFDSVIPVFESVAAAKSQAK

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Crispr_ID: NC_013216_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_3

2198816-2202288

Orphan

Consensus_repeat	Method
GTTTTTAGCCTACCTATAAGGAATTGAAAT	PILER-CR
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CRISPRCasFinder
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CRT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	PILER-CR

52 spacers

The CRISPR arrays of NC_013216_3

>merge|NC_013216|3|2198816-2202288|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTTAGCCTACCTATAAGGAATTGAAATTATTTTCAGGAAACGGCACAAGAAATCACCTCACCTAAGTTTTTAGCCTACCTATAAGGAATTGAAATACTGAACGGCGATATCGTTGGCAGCACTAGCGCCAGTTTTTAGCCTACCTATAAGGAATTGAAATGCAGCTTCCGCTACTTCATCCGGCTCTGCATCTCTTGTTTTTAGCCTACCTATAAGGAATTGAAATTTGCCAATAATCTCAATATCGCCATCTTGCTGAGCCCGTTTTTAGCCTACCTATAAGGAATTGAAATAAAGAAGTGTTGTCACGCTTTCTTAGTTCATCATATGTTTTTAGCCTACCTATAAGGAATTGAAATTTAGCTTTCATGCTATGGCCATTATATTTGCCAATAGGTTTTTAGCCTACCTATAAGGAATTGAAATTTTGGCGTAGTTACTGGTAGTCTTAAAAATGTAAATGGTTTTTAGCCTACCTATAAGGAATTGAAATGATCGTATATTATTTAAATCTGCCGAGGTTAAAATTGGTTTTTAGCCTACCTATAAGGAATTGAAATTTGGTGCACTAAAATGCCACGCGGCAATGTTTCTTGTTTTTAGCCTACCTATAAGGAATTGAAATTTTTAAGGAGGTTAATTAAAAGTTTATGATCGTTTTTAGCCTACCTATAAGGAATTGAAATCGCTGGCTACTGAGGAAGCGGGAGCGAAAGTAAGGGTTTTTAGCCTACCTATAAGGAATTGAAATTATATCAGGTGTTTTTACTAATTTATTTGTAGCAAGTTTTTAGCCTACCTATAAGGAATTGAAATCGGGTTCATTCACGAAATATATGGCCGAGCTTGGGCGGTTTTTAGCCTACCTATAAGGAATTGAAATAACCTAACCGGTTGTGAACTGGCCAAAACTATTCCTAGTTTTTAGCCTACCTATAAGGAATTGAAATCGCAAGGGTGGCTTTATCGGTCTTTCAAGCACCGCAGGTTTTTAGCCTACCTATAAGGAATTGAAATTTGAGCTTCCGGCGTGTGCGTTCGATTTTTATGATTGTTTTTAGCCTACCTATAAGGAATTGAAATTCACATTTGAGCCTAACGGCATTCCGGCAATTAAGGTTTTTAGCCTACCTATAAGGAATTGAAATTAGACTTAATAATTCCTTTTCTTGACTTTTCGCTTAGTTTTTAGCCTACCTATAAGGAATTGAAATATTGGTCGGGGCTTTTTTTTATTTTCTAATAAAAAACGTTTTTAGCCTACCTATAAGGAATTGAAATCAGAGTTGGAAATTGAGGGAATGATAGAAGAAATTGAGTTTTTAGCCTACCTATAAGGAATTGAAATTCTATAAATGAAACAATACAAAAAGTTTCTAATGATAGTTTTTAGCCTACCTATAAGGAATTGAAATTCTATAAATGAAACAATACAAAAAGTTTCTAATGATAGTTTTTAGCCTACCTATAAGGAATTGAAATTTTAAATAATCAACATGCCCAACTTCATGTAATAAGTTTTTAGCCTACCTATAAGGAATTGAAATTATTAAATATACTTTATTTAAGTTAGAACAAAAAGTGTTTTTAGCCTACCTATAAGGAATTGAAATATATCTAAAAAGGTTAAAAAAGAAATTAAATGTATTGTTTTTAGCCTACCTATAAGGAATTGAAATTACTAAAACGTGCTTCCCATCTTTTTATAATATTCAAGTTTTTAGCCTACCTATAAGGAATTGAAATTAGATATAAACTTATAAACTTATAAATTTAAAAGGAGTTTTTAGCCTACCTATAAGGAATTGAAATATCTTCTTCTGAACAATGAATTTTTGATTGTGAAGCGTTTTTAGCCTACCTATAAGGAATTGAAATTTTAAAACTTTAGCCACCAACCCCGGATCAAAAACAGTTTTTAGCCTACCTATAAGGAATTGAAATCTGGACATTGCTCGTCGTTACGAAAGGTTAAACAAAGGTTTTTAGCCTACCTATAAGGAATTGAAATTTTCATAGGTGGAACAATGGCTGTAAAAGTTAAAATCGTTTTTAGCCTACCTATAAGGAATTGAAATATAATGACTATTGGAAGGACAAGATAGACCATCTAGGTTTTTAGCCTACCTATAAGGAATTGAAATACGGGATAAGCTACACAGATGCTCAGTCTATGGATAGTTTTTAGCCTACCTATAAGGAATTGAAATTTACTGATCGCACATCTTTGTCATCTGTGTAATCAGGGTTTTTAGCCTACCTATAAGGAATTGAAATCATTATGAAAATGTTTTTCTGTCATTTCCTTTCCTCTAGTTTTTAGCCTACCTATAAGGAATTGAAATAAAATAAAATAGGCTGGAAGTTAATCCAGCTCAAACGTTTTTAGCCTACCTATAAGGAATTGAAATTCTTCTCCCGGAGTTGCATCCAACGGCATTTCTAAGTTTTTAGCCTACCTATAAGGAATTGAAATCCGGAGAGAATTGACCGGACTATAACAGTTAAACTGGTTTTTAGCCTACCTATAAGGAATTGAAATGAAGACTGTTTGGCCAGGATTACGGGCTGCAACTCTACGTTTTTAGCCTACCTATAAGGAATTGAAATTCTACGGTCTTTGCAGGTGTCCCGGTGGTAGCACTGGTTTTTAGCCTACCTATAAGGAATTGAAATTTTCATTTTCACTGTATTCTCTGATATAATCTGCAAGTTTTTAGCCTACCTATAAGGAATTGAAATATGCCTGAAAGTTTTGTCAATCAGGGCACAAGTAGGTTTTTAGCCTACCTATAAGGAATTGAAATCCGACCTAAAGAATGGTGTAGTGGAACTTGTTATTGGGTTTTTAGCCTACCTATAAGGAATTGAAATAACCCTCAGACTTGTAGCAAATGCGACCGTACCTTTCGGTTTTTAGCCTACCTATAAGGAATTGAAATGGCTAATTGGCAGAATGGTTGTGCGGCCAGTAATAGTTTTTAGCCTACCTATAAGGAATTGAAATCATCATACGGTAAATATGTTTCCGAAATTAAGTGTGTTTTTAGCCTACCTATAAGGAATTGAAATCCTACGACATATATTCTCACCTTCTGCCCGGGCAGGTTTTTAGCCTACCTATAAGGAATTGAAATCTTAGGGATGGTTCTTCAGGAACAATATTATTAACAGTTTTTAGCCTACCTATAAGGAATTGAAATTTGTTTTTTTACCATCAGACATAATAATGCTTTCGTCGTTTTTAGCCTACCTATAAGGAATTGAAATTTATGTTCAGCGTAGCAGCTATTGTATTGCCGATTAGTTTTTAGCCTACCTATAAGGAATTGAAATTCTTCCCGAGGAACTTGTACAGAGCACACCAAAATACCGTTTTTAGCCTACCTATAAGGAATTGAAATTTTATCTCTTCGACTATCTTGTAAGCGTGAACTCCTGTTTTTAGCCTACCTATAAGGAATTGAAAT

>NC_013216|3|3|2198816-2199378|PILER-CR
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATTTTCAGGAAACGGCACAAGAAATCACCTCACCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACTGAACGGCGATATCGTTGGCAGCACTAGCGCCA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GCAGCTTCCGCTACTTCATCCGGCTCTGCATCTCTT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGCCAATAATCTCAATATCGCCATCTTGCTGAGCCC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAGAAGTGTTGTCACGCTTTCTTAGTTCATCATAT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTAGCTTTCATGCTATGGCCATTATATTTGCCAATAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTGGCGTAGTTACTGGTAGTCTTAAAAATGTAAATG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GATCGTATATTATTTAAATCTGCCGAGGTTAAAATTG
GTTTTTAGCCTACCTATAAGGAATTGAAATTTGGTGCACTAAAATGCCACGCGGCAATGTTTCTTGTTTTTAGCCTACCTATAAGGAATTGAAATTTTTAAGGAGGTTAATTAAAAGTTTATGATCGTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCTGGCTACTGAGGAAGCGGGAGCGAAAGTAAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATATCAGGTGTTTTTACTAATTTATTTGTAGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGGGTTCATTCACGAAATATATGGCCGAGCTTGGGCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCTAACCGGTTGTGAACTGGCCAAAACTATTCCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCAAGGGTGGCTTTATCGGTCTTTCAAGCACCGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGAGCTTCCGGCGTGTGCGTTCGATTTTTATGATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCACATTTGAGCCTAACGGCATTCCGGCAATTAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGACTTAATAATTCCTTTTCTTGACTTTTCGCTTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATTGGTCGGGGCTTTTTTTTATTTTCTAATAAAAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CAGAGTTGGAAATTGAGGGAATGATAGAAGAAATTGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAATAATCAACATGCCCAACTTCATGTAATAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATTAAATATACTTTATTTAAGTTAGAACAAAAAGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATATCTAAAAAGGTTAAAAAAGAAATTAAATGTATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TACTAAAACGTGCTTCCCATCTTTTTATAATATTCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGATATAAACTTATAAACTTATAAATTTAAAAGGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATCTTCTTCTGAACAATGAATTTTTGATTGTGAAGC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAAACTTTAGCCACCAACCCCGGATCAAAAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTGGACATTGCTCGTCGTTACGAAAGGTTAAACAAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATAGGTGGAACAATGGCTGTAAAAGTTAAAATC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATAATGACTATTGGAAGGACAAGATAGACCATCTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACGGGATAAGCTACACAGATGCTCAGTCTATGGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTACTGATCGCACATCTTTGTCATCTGTGTAATCAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATTATGAAAATGTTTTTCTGTCATTTCCTTTCCTCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAATAAAATAGGCTGGAAGTTAATCCAGCTCAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCTCCCGGAGTTGCATCCAACGGCATTTCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGGAGAGAATTGACCGGACTATAACAGTTAAACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GAAGACTGTTTGGCCAGGATTACGGGCTGCAACTCTAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTACGGTCTTTGCAGGTGTCCCGGTGGTAGCACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATTTTCACTGTATTCTCTGATATAATCTGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATGCCTGAAAGTTTTGTCAATCAGGGCACAAGTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGACCTAAAGAATGGTGTAGTGGAACTTGTTATTGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCCTCAGACTTGTAGCAAATGCGACCGTACCTTTCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GGCTAATTGGCAGAATGGTTGTGCGGCCAGTAATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATCATACGGTAAATATGTTTCCGAAATTAAGTGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCTACGACATATATTCTCACCTTCTGCCCGGGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTTAGGGATGGTTCTTCAGGAACAATATTATTAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGTTTTTTTACCATCAGACATAATAATGCTTTCGTC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTATGTTCAGCGTAGCAGCTATTGTATTGCCGATTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCCCGAGGAACTTGTACAGAGCACACCAAAATACC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTATCTCTTCGACTATCTTGTAAGCGTGAACTCCT


>NC_013216|3|3|2198816-2202288|CRISPRCasFinder
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATTTTCAGGAAACGGCACAAGAAATCACCTCACCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACTGAACGGCGATATCGTTGGCAGCACTAGCGCCA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GCAGCTTCCGCTACTTCATCCGGCTCTGCATCTCTT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGCCAATAATCTCAATATCGCCATCTTGCTGAGCCC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAGAAGTGTTGTCACGCTTTCTTAGTTCATCATAT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTAGCTTTCATGCTATGGCCATTATATTTGCCAATAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTGGCGTAGTTACTGGTAGTCTTAAAAATGTAAATG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GATCGTATATTATTTAAATCTGCCGAGGTTAAAATTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGGTGCACTAAAATGCCACGCGGCAATGTTTCTT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTTAAGGAGGTTAATTAAAAGTTTATGATC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCTGGCTACTGAGGAAGCGGGAGCGAAAGTAAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATATCAGGTGTTTTTACTAATTTATTTGTAGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGGGTTCATTCACGAAATATATGGCCGAGCTTGGGCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCTAACCGGTTGTGAACTGGCCAAAACTATTCCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCAAGGGTGGCTTTATCGGTCTTTCAAGCACCGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGAGCTTCCGGCGTGTGCGTTCGATTTTTATGATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCACATTTGAGCCTAACGGCATTCCGGCAATTAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGACTTAATAATTCCTTTTCTTGACTTTTCGCTTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATTGGTCGGGGCTTTTTTTTATTTTCTAATAAAAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CAGAGTTGGAAATTGAGGGAATGATAGAAGAAATTGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAATAATCAACATGCCCAACTTCATGTAATAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATTAAATATACTTTATTTAAGTTAGAACAAAAAGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATATCTAAAAAGGTTAAAAAAGAAATTAAATGTATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TACTAAAACGTGCTTCCCATCTTTTTATAATATTCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGATATAAACTTATAAACTTATAAATTTAAAAGGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATCTTCTTCTGAACAATGAATTTTTGATTGTGAAGC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAAACTTTAGCCACCAACCCCGGATCAAAAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTGGACATTGCTCGTCGTTACGAAAGGTTAAACAAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATAGGTGGAACAATGGCTGTAAAAGTTAAAATC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATAATGACTATTGGAAGGACAAGATAGACCATCTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACGGGATAAGCTACACAGATGCTCAGTCTATGGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTACTGATCGCACATCTTTGTCATCTGTGTAATCAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATTATGAAAATGTTTTTCTGTCATTTCCTTTCCTCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAATAAAATAGGCTGGAAGTTAATCCAGCTCAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCTCCCGGAGTTGCATCCAACGGCATTTCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGGAGAGAATTGACCGGACTATAACAGTTAAACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GAAGACTGTTTGGCCAGGATTACGGGCTGCAACTCTAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTACGGTCTTTGCAGGTGTCCCGGTGGTAGCACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATTTTCACTGTATTCTCTGATATAATCTGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATGCCTGAAAGTTTTGTCAATCAGGGCACAAGTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGACCTAAAGAATGGTGTAGTGGAACTTGTTATTGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCCTCAGACTTGTAGCAAATGCGACCGTACCTTTCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GGCTAATTGGCAGAATGGTTGTGCGGCCAGTAATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATCATACGGTAAATATGTTTCCGAAATTAAGTGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCTACGACATATATTCTCACCTTCTGCCCGGGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTTAGGGATGGTTCTTCAGGAACAATATTATTAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGTTTTTTTACCATCAGACATAATAATGCTTTCGTC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTATGTTCAGCGTAGCAGCTATTGTATTGCCGATTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCCCGAGGAACTTGTACAGAGCACACCAAAATACC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTATCTCTTCGACTATCTTGTAAGCGTGAACTCCT
GTTTTTAGCCTACCTATAAGGAATTGAAAT

>NC_013216|3|3|2198816-2202288|CRT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATTTTCAGGAAACGGCACAAGAAATCACCTCACCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACTGAACGGCGATATCGTTGGCAGCACTAGCGCCA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GCAGCTTCCGCTACTTCATCCGGCTCTGCATCTCTT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGCCAATAATCTCAATATCGCCATCTTGCTGAGCCC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAGAAGTGTTGTCACGCTTTCTTAGTTCATCATAT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTAGCTTTCATGCTATGGCCATTATATTTGCCAATAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTGGCGTAGTTACTGGTAGTCTTAAAAATGTAAATG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GATCGTATATTATTTAAATCTGCCGAGGTTAAAATTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGGTGCACTAAAATGCCACGCGGCAATGTTTCTT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTTAAGGAGGTTAATTAAAAGTTTATGATC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCTGGCTACTGAGGAAGCGGGAGCGAAAGTAAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATATCAGGTGTTTTTACTAATTTATTTGTAGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGGGTTCATTCACGAAATATATGGCCGAGCTTGGGCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCTAACCGGTTGTGAACTGGCCAAAACTATTCCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCAAGGGTGGCTTTATCGGTCTTTCAAGCACCGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGAGCTTCCGGCGTGTGCGTTCGATTTTTATGATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCACATTTGAGCCTAACGGCATTCCGGCAATTAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGACTTAATAATTCCTTTTCTTGACTTTTCGCTTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATTGGTCGGGGCTTTTTTTTATTTTCTAATAAAAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CAGAGTTGGAAATTGAGGGAATGATAGAAGAAATTGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAATAATCAACATGCCCAACTTCATGTAATAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATTAAATATACTTTATTTAAGTTAGAACAAAAAGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATATCTAAAAAGGTTAAAAAAGAAATTAAATGTATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TACTAAAACGTGCTTCCCATCTTTTTATAATATTCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGATATAAACTTATAAACTTATAAATTTAAAAGGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATCTTCTTCTGAACAATGAATTTTTGATTGTGAAGC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAAACTTTAGCCACCAACCCCGGATCAAAAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTGGACATTGCTCGTCGTTACGAAAGGTTAAACAAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATAGGTGGAACAATGGCTGTAAAAGTTAAAATC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATAATGACTATTGGAAGGACAAGATAGACCATCTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACGGGATAAGCTACACAGATGCTCAGTCTATGGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTACTGATCGCACATCTTTGTCATCTGTGTAATCAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATTATGAAAATGTTTTTCTGTCATTTCCTTTCCTCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAATAAAATAGGCTGGAAGTTAATCCAGCTCAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCTCCCGGAGTTGCATCCAACGGCATTTCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGGAGAGAATTGACCGGACTATAACAGTTAAACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GAAGACTGTTTGGCCAGGATTACGGGCTGCAACTCTAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTACGGTCTTTGCAGGTGTCCCGGTGGTAGCACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATTTTCACTGTATTCTCTGATATAATCTGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATGCCTGAAAGTTTTGTCAATCAGGGCACAAGTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGACCTAAAGAATGGTGTAGTGGAACTTGTTATTGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCCTCAGACTTGTAGCAAATGCGACCGTACCTTTCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GGCTAATTGGCAGAATGGTTGTGCGGCCAGTAATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATCATACGGTAAATATGTTTCCGAAATTAAGTGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCTACGACATATATTCTCACCTTCTGCCCGGGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTTAGGGATGGTTCTTCAGGAACAATATTATTAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGTTTTTTTACCATCAGACATAATAATGCTTTCGTC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTATGTTCAGCGTAGCAGCTATTGTATTGCCGATTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCCCGAGGAACTTGTACAGAGCACACCAAAATACC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTATCTCTTCGACTATCTTGTAAGCGTGAACTCCT
GTTTTTAGCCTACCTATAAGGAATTGAAAT

>NC_013216|3|4|2199475-2202288|PILER-CR
	TATTTTCAGGAAACGGCACAAGAAATCACCTCACCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACTGAACGGCGATATCGTTGGCAGCACTAGCGCCA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GCAGCTTCCGCTACTTCATCCGGCTCTGCATCTCTT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGCCAATAATCTCAATATCGCCATCTTGCTGAGCCC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAGAAGTGTTGTCACGCTTTCTTAGTTCATCATAT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTAGCTTTCATGCTATGGCCATTATATTTGCCAATAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTGGCGTAGTTACTGGTAGTCTTAAAAATGTAAATG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GATCGTATATTATTTAAATCTGCCGAGGTTAAAATTG
GTTTTTAGCCTACCTATAAGGAATTGAAATTTGGTGCACTAAAATGCCACGCGGCAATGTTTCTTGTTTTTAGCCTACCTATAAGGAATTGAAATTTTTAAGGAGGTTAATTAAAAGTTTATGATCGTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCTGGCTACTGAGGAAGCGGGAGCGAAAGTAAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATATCAGGTGTTTTTACTAATTTATTTGTAGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGGGTTCATTCACGAAATATATGGCCGAGCTTGGGCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCTAACCGGTTGTGAACTGGCCAAAACTATTCCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CGCAAGGGTGGCTTTATCGGTCTTTCAAGCACCGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGAGCTTCCGGCGTGTGCGTTCGATTTTTATGATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCACATTTGAGCCTAACGGCATTCCGGCAATTAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGACTTAATAATTCCTTTTCTTGACTTTTCGCTTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATTGGTCGGGGCTTTTTTTTATTTTCTAATAAAAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CAGAGTTGGAAATTGAGGGAATGATAGAAGAAATTGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTATAAATGAAACAATACAAAAAGTTTCTAATGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAATAATCAACATGCCCAACTTCATGTAATAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TATTAAATATACTTTATTTAAGTTAGAACAAAAAGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATATCTAAAAAGGTTAAAAAAGAAATTAAATGTATT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TACTAAAACGTGCTTCCCATCTTTTTATAATATTCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TAGATATAAACTTATAAACTTATAAATTTAAAAGGA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATCTTCTTCTGAACAATGAATTTTTGATTGTGAAGC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTAAAACTTTAGCCACCAACCCCGGATCAAAAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTGGACATTGCTCGTCGTTACGAAAGGTTAAACAAAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATAGGTGGAACAATGGCTGTAAAAGTTAAAATC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATAATGACTATTGGAAGGACAAGATAGACCATCTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ACGGGATAAGCTACACAGATGCTCAGTCTATGGATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTACTGATCGCACATCTTTGTCATCTGTGTAATCAGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATTATGAAAATGTTTTTCTGTCATTTCCTTTCCTCTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAATAAAATAGGCTGGAAGTTAATCCAGCTCAAAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCTCCCGGAGTTGCATCCAACGGCATTTCTAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGGAGAGAATTGACCGGACTATAACAGTTAAACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GAAGACTGTTTGGCCAGGATTACGGGCTGCAACTCTAC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTACGGTCTTTGCAGGTGTCCCGGTGGTAGCACTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTCATTTTCACTGTATTCTCTGATATAATCTGCAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	ATGCCTGAAAGTTTTGTCAATCAGGGCACAAGTAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCGACCTAAAGAATGGTGTAGTGGAACTTGTTATTGG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AACCCTCAGACTTGTAGCAAATGCGACCGTACCTTTCG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	GGCTAATTGGCAGAATGGTTGTGCGGCCAGTAATA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CATCATACGGTAAATATGTTTCCGAAATTAAGTGT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CCTACGACATATATTCTCACCTTCTGCCCGGGCAG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTTAGGGATGGTTCTTCAGGAACAATATTATTAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTGTTTTTTTACCATCAGACATAATAATGCTTTCGTC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTATGTTCAGCGTAGCAGCTATTGTATTGCCGATTA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TCTTCCCGAGGAACTTGTACAGAGCACACCAAAATACC
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTATCTCTTCGACTATCTTGTAAGCGTGAACTCCT
GTTTTTAGCCTACCTATAAGGAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_157862903.1\|2188724_2189978_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_013216.1\|WP_015757564.1\|2202525_2203636_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_013216.1\|WP_157862907.1\|2206628_2206889_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|320700
NC_013216.1\|WP_015757025.1\|2186426_2187983_+\|IS5-like-element-ISDce1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_013216.1\|WP_157862905.1\|2204075_2204222_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015757566.1\|2205947_2206325_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_013216.1\|WP_015757560.1\|2189979_2193096_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_013216.1\|WP_162013534.1\|2181746_2183339_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|379073
NC_013216.1\|WP_157863086.1\|2204235_2205183_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_052292931.1\|2206839_2208024_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320700
NC_013216.1\|WP_015757563.1\|2195365_2198542_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_013216.1\|WP_052292930.1\|2206326_2206596_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015757561.1\|2193215_2193899_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013216.1\|WP_015757558.1\|2188202_2188685_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_013216.1\|WP_015757555.1\|2183397_2184264_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NC_013216.1\|WP_052292932.1\|2210958_2211552_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_157862909.1\|2208640_2209498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377924
NC_013216.1\|WP_015757556.1\|2184337_2185897_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_013216.1\|WP_015757562.1\|2193882_2195304_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013216.1\|WP_157863087.1\|2208354_2208534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100119

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_157862903.1\|2188724_2189978_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.73087e-55
NC_013216.1\|WP_015757564.1\|2202525_2203636_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.02012e-43
NC_013216.1\|WP_157862907.1\|2206628_2206889_+\|hypothetical-protein	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	3.2054e-10
NC_013216.1\|WP_015757025.1\|2186426_2187983_+\|IS5-like-element-ISDce1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.15362e-19
NC_013216.1\|WP_015757566.1\|2205947_2206325_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.61811e-25
NC_013216.1\|WP_015757560.1\|2189979_2193096_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_013216.1\|WP_162013534.1\|2181746_2183339_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|379073	pfam13205, Big_5, Bacterial Ig-like domain.	3.37333e-16
NC_013216.1\|WP_052292931.1\|2206839_2208024_+\|M56-family-metallopeptidase	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	2.75243e-33
NC_013216.1\|WP_015757563.1\|2195365_2198542_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_013216.1\|WP_015757561.1\|2193215_2193899_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.71118e-78
NC_013216.1\|WP_015757558.1\|2188202_2188685_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.51101e-20
NC_013216.1\|WP_015757555.1\|2183397_2184264_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	1.02831e-11
NC_013216.1\|WP_157862909.1\|2208640_2209498_+\|hypothetical-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	3.43063e-14
NC_013216.1\|WP_015757556.1\|2184337_2185897_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.20815e-59
NC_013216.1\|WP_015757562.1\|2193882_2195304_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.65831e-47
NC_013216.1\|WP_157863087.1\|2208354_2208534_-\|hypothetical-protein	gnl\|CDD\|100119	cd06171, Sigma70_r4, Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).	0.0012848

>NC_013216.1|WP_015757563.1|2195365_2198542_+|efflux-RND-transporter-permease-subunit
MHITELSIKRPAMMTMVIMFFVVLGLYTYGRIGTELFPAINTPYVTVSVSYPGAGAEEIETQIIKPIEENLASLSQLKHINSMASVGRANVSLEFDLTADADEAAIDVQKKVDAISGRFPDGAGDPVVIKRDMNDQPIMTLSLSSKRPQYEIYDLANDIVKERLQRLTGVTEVAISGGQQREIQINIDKTRLEGYGLTLNQVISRLEEENLDDPSGRIDRPEAEYNLRVLGQFRSINDIAAIHIPTSSGYPVPLKDIATVTEGYQEVRAFSRLNGTDAVSIQIYKQSDASVVAVGKTVKNELDVIKKELPTDSELIISNDSSDYVQRSLNGTWSNILEGIITTGLALFIFLRQWRSTLIVMLAIPTSLIATVMMMYFSGFTFNMMSLMGLALCIGILVDDSIVVLENIHRHVQMGKSPYEAAIEGRREIGMAAIAITMSDIVVFMPIALMNGMVGQFFRQFGMTVVFATLFSLFISFTLTPMLASRLYKQKLNPESGEGQEHSSPEVLQKKRQSIFAFIWKHTIPLGRKVKQAYLKQLDWSFNNRKKVLAFSVLAFLLSLTVIPLKLVGMEFAPKTDQGQISVSLEMPIGTPIGKTDAAVRKLEAYLSKVPELQFYQTSVGGGGGRGASTGSNTGRISLQLYPKTERERSVWEVADGIRKWSKSFKEGRVFVTESDSMGGGGGGSAVQIVVSGKDPEKLLQLVDQVKGVVASTPGAADPNTNWRLGQPEIQVRVDHLRTAYYDLSVNDVARTVRASINGETAGVYHDGDRDVDIVVRLDGASKQDVGSLKDIKIASGNTPVSLGQVADIDFGSGPRDIRRVDRQRAINVTCNVRDRVLSDFMQEVKVKLAEIKLQPGFSITYSGQDQNMNDSFKELAAALLLSILLVYMVLVMLYESFTTPFIRMLSLPLGIMGALVALAIFRYNLNLFTIIGVIMLDGLVAKNGTLLIDYTHTMMAQGKTLREALVEAATTRLRPIIMTTITMVFGMLPTALSLTEGAENRSGMAVVLIGGLLSSTVFTLFVIPVVYTIIDDWKHNWHERRRNRLIKKGLVVDSSVI
>NC_013216.1|WP_015757562.1|2193882_2195304_+|HAMP-domain-containing-histidine-kinase
MLNRSSKKDIKTVPLLTYWTRFYFLVLMSCLLLLAVIAVIWIRLTVYDNRYQILEVRAEKLAEIYEDTAGQNLLPRNMNRTREIRSELFLVQIVDRAGNIQTIRKDKASNKNAAAINNLSKLNGQILAGQKIREQFKIGNLTWLRVGVPLYQKGIITGALYISIPASGLLADLHFMHISIFLIIAIIVLAGWLVLYFLSRKLTRPLLAIAGAAQAIASGHYEPRLPQNLKERELQQLVTSFSDMAFQLKQLERMRADLLAGVSHELRTPVTSIRGMIQAVHGKVVTGPEADEFLYISLNESIRLQQMVEDLLDFSTFEAGAEPIEKEYFNLLGLLDEVICQVSILAGYEQISFDRKGLDQEVWMTGDRGRLRQVFLNLFSNSQKASATVIKIVLRVGEDNIEIDVEDNGKGIEEADREYIFERFYRGQGKKMKPRGLGLGLTVSRMLSRAHGGDLFLLRTSSEGSVFCLTLPL
>NC_013216.1|WP_015757561.1|2193215_2193899_+|response-regulator-transcription-factor
MQTLMVVEDETPIALVLRAYLEKAGFSTYIAADGEEALLKFSEINPSLLLLDLMLPGQDGLSVLEKIRKTSTCPVIVITARGAVKDRLQGFHLGADDYIAKPFDPDEVVARVKAVLRRPARIVEADLVQFGHLTVDFTSCNAVLKGRNISLARRDWDLLSFLVRHPNQVFSRTQLLDYVWGIDYDGGDRAVDVAVKRLRQALKDWPSSEGEIATVRGTGYMLSVKQK
>NC_013216.1|WP_015757560.1|2189979_2193096_+|efflux-RND-transporter-permease-subunit
MLESLIRKRKITILFFVMITSLGFISFFQLAKQESPDIIVKTALVTTVYPGARPEKVEQTVTRKIEEQIKEMEDLKSITSTSSLGVSQIIIQAKDDVKDPKAIWDELRKKVKDAEKDLPEDAKQPIINDNLNRTFVQTINLTAPDREHLYSMREMIKNWKDQLRTLPNVSNVTVTGLPEEEVRVIVDSQKLQNYGLSWPTVLNAVKMYNDKNPLGTVEGEKRTYELTLNEVKNVDEFKNVLVSRTSGNIPVYLKDVARVDLTTKRVAEYVFQNGKPAISVSISAETGSDVPSLQKSISKMMSRLVKGIPSWSTAEVIFTQNDRVDELFSDLARETFFAVISVIFVCTLGLNLTTSFVVMMAIPISIALGIIPLNALGISLNQISIVALVIVLGILVDDAVVVNDNIERRLSVLRESPEDAAIKGSKEVSVSILTATLSTICAFGPLAFLQGDVGSFIRPIPVIISLTMLASMAMSLTIIPIFRQWHETKRIKTGLLSDKANSEAADLAAEYRKPAGLLGKQLQSVTSFYAGKLMPRMLKKPLKTGMIGVLIGTLAYGLIPFTPVQLFPNANRAEMLINVRLPVGSSINNTANLVQDLSLWLKGQATVKMVSAYAGVMAPKMFGGDTGSGSGDNIAQLVVTLDKNKLSTEDAVKKWEKELQNRYPNASVIPKELQAGPPVGNPVAVRIYGDDLEKLRNLSKQMQDVTKSVRGTTDIQDSFGIDRYAVSFDLNKENMDAKMVNPNDISRTIRLVSEGISNSQFDNGRDLIDITLFSDTQGVDSLAAIQRLTVPNALGEQVPLYQLAEIHPSFSMPSISHRNLSRVVTVTADVKGRTATDVIKELTPLLNKVKLPEGYQYEIAGETSEQSDIFIDMGKLSVIVFFLIIILITLQFYSLSIPFLVMSTIFLAFAGSLIGLFITRTPLGFMTMMGVISLTGIVVRNGIILVEFIENARHEGMELVEAVISAGESRLRPILLTSATAIAGLMPLAVAGDVLFRPLAVTIMSGLFFSTMLTLIIVPSFYTVLAQIKIRRAQKALV
>NC_013216.1|WP_157862903.1|2188724_2189978_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MIHMGRYIKQIAAAVIVILLVTIIASACNKNKSTTKDSAVTEKTVEIMKLATTKQQINSELSGNLMPLEEVTASFETGGRITSLPLKEGEYVQAGSVIAQIDDEDYMLQVENAKAASSQARAGLEQVENGATEHEKIQAQAMLDKARTSYDKAKADYDRANSLHQASAISQSDYEKAQTVMIAAQKDLENAEQAHATVIEGPRSEIKAQTRAAYQQSVVGQEKASLLLEKTRLKAPISGTIISKLSTLGQLISAGTPVYKIGAIDKLKVVLPVSDREISQWQVGKLVTLNLYGQKREGTVKYIYPATEQNTGTIGTEVWVENPDHNWFAGQVVKATSTLKEKEAVWAPIDAVVSAGTGKPYVFLYQNKKAVKRTVTVGELVNDHLEITSGVKAGDVIIASGADRLFDGDPVTPLGGE
>NC_013216.1|WP_015757558.1|2188202_2188685_+|PadR-family-transcriptional-regulator
MSGYDIKQYIEIHFPFFFVASYGTIYPTLNKMEKEGYITKQLQIQEGKPNKNVYSITEKGKEAFRAYLDSPVEPLSIRFDFIMRMHFGHHAEMDKIILWIEEEIRRTKLAIAHIEEVNRLEEKRMTPTKKICYRVGINHYTNYLATMEEALQELKASLID
>NC_013216.1|WP_015757025.1|2186426_2187983_+|IS5-like-element-ISDce1-family-transposase
MMGKLTNQINFSDTDEWYKRIPQNSFWHKVRQWAEENLSDDDFAHLYSSNRGRPSLPPVFMLKSILIQLEKQYSDRVMEESAMFDDRVKYALCLSRTPQIKLDHATLCRYRKIFLEDEQGKKILKKTIENAAEAGLFEEANKDAVDSFMIHGAAARQSTFTMIRKATARVLRQADVEGFIEDIRQKLNRDDYLNNKKPTIDWDNIEARNKLLTEMVLDARTIALWAKENKAKISEELNQCIELLQIVAEQDIEEKDGNIAIRQGVAKDRIISVEDPQMRHGRKTTSSKTDGYKGHIMSGGIENKIITAAEITAANVPDSEPVPDLIKQRQENTGSKPDSLSGDTAYGGAETRKHIKKEKIKLIAKVPPSTNVNGCFNKDKFIIDLDNKFIECPAGVRLEIDKELGEKEICCKFPKEQCQNCDLRNQCTKSKDGRTVRIHPHEALLQKARKQQQTAEFKEEYRFRSRIERIIYCVTKNGARKGKYNGLEKNRFKLQLHTALHNIKTILSLAKKNPAIVV
>NC_013216.1|WP_015757556.1|2184337_2185897_-|methyl-accepting-chemotaxis-protein
MSIRLKLSLLNTFFLILLLAVVGIFSINSIHSRLIESSQIKLKSDLGMSRNLIEQTYPGQWSVREGMLYKGDVKINDNYEIVDKIGSITGDTATIFQGDRRVSTNVKSADGKRAIGTRAAAEVIQTVITRGQTYTGKAQVVGEWNQTAYEPITDSQGKVIGMLYVGVPNNLYDQTLKKLTFEIILFGIIGLVLSILLSNYLLRRIFVKPIQHFIEFSEIISNGDFSQEITYNSKDEFGKLAQAFNKITHNLKDITGQTTVICNKATDTANTLASQAAQTSSATVENASTVSEISATVDSMAQNIKEVSGQAEEASRQAQQGQENIERIVSSMHDIECSVGHVSDSLNSLNQAIGNIGQFVDTINNIAEQTNLLALNAAIEAARAGEAGKGFAVVADEVRKLAEGSAKSASETRQIITAVQAQSNQAVKNMEVSKEEVTRGDRVIREVSQSLVAITGYIQNLSQKAQEIAQASTQVADAVQNVAATTEEQTAAIEHISCSAAEMNDYAAQMYKELQRFKL
>NC_013216.1|WP_015757555.1|2183397_2184264_+|S-layer-homology-domain-containing-protein
MKNGLITLAVFICLVFSLSGGVSAATITDVKGHWAEASINKWISAGYVSGYPEGLFKPNQKISRAEFVTLVNKAFKKQNPNSQCKFSDVKQTDWFYPGVLAGVAGGYISGYEGGTFKPGKFISRQEAAVIITRLLQLNNGSNMNFKDANSIPGWSASGIKAVVANNIMKGYSDGTFKAAQSITRAEAVTALDRAYVSFMAFQGVKGSVKMNNCPVEGALVKLFARNNPSVLKDVSTTDSNGMYKIAAQPGSYNLEVNKDGSLGYAYNISIGKGIATLQDFSLVKVSIN
>NC_013216.1|WP_162013534.1|2181746_2183339_+|S-layer-homology-domain-containing-protein
MFKRGLTLFLAMSVLLLSTSTAAMAKNNGKSNGNNKFNNVVNYSFNVTKQNANKIKFKDVVNHWAIPQISAMNMQGIISGYPDANFQPEKSVTKYEALTMICRALGMNQDYSADNKWSGVPDWARESIDFAVEKNIISEKEAKNFAGNTPAKRYEVAIWVARAANLDSYNNINFVDMNDIPVYARSYIGSMYRCGYMVGYPGNMFQPNKPIKRAEIAVILFNLLSDYNQTSHYKVVKGTITDIDDDSVTINNKTYEITDDTEIYLNKESADWDDISEGDKAVIYLSSSSEINYLYAYDDDEDTDEDELTVESYTPAKNKQNVDRDIEQLVVKFNQDIEAEEDYEAVLDAIAITATDDNENVDVTRSIDVESVEIKNDTLYINLEDAFDYDENCSVTIDSGVIQAEDSNDTNDKIAWSFDIESEDELKVESLSPADGADNVDQDTDELVVRFNNDIEAKNSLSDIRHAITVSDNIDVESVEIDDNELIIKLDDELDYNEDYTVTINSGVIEAEYSSYTNDEIKWSFTTEDD
>NC_013216.1|WP_015757564.1|2202525_2203636_-|IS3-family-transposase
MRKTYTDTFKAQIVLELLKEEKTIAQIASESGVHPTQLKKWKTMAIDKLPTLFSDEHRAARAAKAAEEKKVNELYAEIGRLTTQLTWLKKKLALNLTKEERLALVEPDNKEISLTAQADLLGINRTRIYYKPAPPSAEEIAIRHRIDEIYTRHPYYGSRRITAQLCRENIPVNRKRVQHYMRDMGLAGICPGPNLSKRNTEHRVYPYLLRGVTANHPNHIWGIDITYIRLKEGWMYLVAILDWFSRFIISWELDQVLEIPFVLVAVKRALDKKMPLIWNSDQGSHFTSPQYTQLLQNAGVLISMDGKGRAIDNIFTERLWRSIKYEEVYLNDYMSPREARRGIRRYIDFYNNERPHQSLDYKTPFEIYY
>NC_013216.1|WP_157862905.1|2204075_2204222_+|hypothetical-protein
MEPKTDEWGKYADIRVIRNAETNEVESIVIMSETEANQAILKNIGPER
>NC_013216.1|WP_157863086.1|2204235_2205183_+|hypothetical-protein
MHFMNKRISCFISLTLILILLLCGCMHKESTDKDEGLSHIYSENTYGYYFDFYTADSKDKDRNGTITLNAYDDDMFFEVENSGTERELSLQIFVDYKQVPIILDDVEYDTFIIQADENFSEAYQFKLATPVDTSINHTLLAILTAGSNIYTSLADFKMSNHYSIALDHVLVFAPNNSLYQANTSVEETQVVTEYQSSGLFLNSDINGRGRKLTREITVNAGEEFQLQYQTGGYEDCEEVAIIITMGLEQVQINNQDFILCKVENGELVSGIATLKAPEEAGLYEIMGWVVKNPFDADKSEYLPLDAMHRFTLNVE
>NC_013216.1|WP_015757566.1|2205947_2206325_+|BlaI/MecI/CopY-family-transcriptional-regulator
MGTLKKLPDTEFDIMKVVWANEPPITTNIIMQQLGNEREWKAQTVISLMLRLVERGFIRTEKNGKERTYFPLISKEDYLKFETGDFMERFHGNSFASLVATLYNGNKIKDSDLDQLAKWLKEKGE
>NC_013216.1|WP_052292930.1|2206326_2206596_+|hypothetical-protein
MQNFSTTLLQCSVSMSLVTLVYAAILPLLSKRYAAKWRYMVWLVIASGWIFPFRPRIDLSFLPAQMTDIPLSPVQPIINAIPTMTDTEI
>NC_013216.1|WP_157862907.1|2206628_2206889_+|hypothetical-protein
MLAAIWILGVVCVVVYHVLRHGRFIKMVRRWSEPVTDLESLGILDSLKSEMGIKAQVGLSMCQSITSPMLVGFFRPAIFTAACQNC
>NC_013216.1|WP_052292931.1|2206839_2208024_+|M56-family-metallopeptidase
MDFSGLPFLLPPVKIADDELSLILKHELIHLKRYDLWYKALFLTATVLHWFNQVVYLMAKSAAVQCEISCDALVLQGADFQQRKQYGETIIGVVRNGAKLRTALSTNFYGGKKGMKTRISSIMDTKRKKAGVAVFCVVLVGIIMSGATLAAAANDGQNMTNYNVNYNGATENLTTDFSQYKEYSLIYDKTTNKLTYQGKLVRYFEDFYPLEEGNQAGIDFFDKDGIVDVHAVRDLAPIKNSDGSINPAGKLVGLEQSSQEDFDARDISRFLPSAAQELSQGTQGSTLPDAYSAAYSSGMTTPDELAKVYSVYEPYGLTYDKKQNRLYYNGKLVREFIDILSSNGEALESGKFKGSMRQFNSPDGKGEVDIKSVRDYTKLNADGQGELTGIEVIK
>NC_013216.1|WP_157863087.1|2208354_2208534_-|hypothetical-protein
MKSALKYLTIQQRKIVLLNILQYSDTEIANILNITRQAVNKIKRKAFYTLKIKLINYSK
>NC_013216.1|WP_157862909.1|2208640_2209498_+|hypothetical-protein
MKKILVISVLSLCLIFATKVYGSNDVIKLKLNGETVSPDVPPQIINGRVMVPLRWVAQAMNAKVSWNQNDNSVSIDNLGVVANTPDNKVKLYPFSEENGYYKGFIMDIDGKRKYFDWYNMANPSFLPKIYYDDLNNDGNKEIIVILITGEGTGVLTQQMNIINPENFEEIGVENPLNVIKERVKTQILKGTTESTVKLNIDNKEEEIKISNDPNETLLDNIIFNEFYFYLIEENKLVVYINPIISYQRAGIGIGQIKISYNFDGKAFKAQTITYNSNYYYPDPLW
>NC_013216.1|WP_052292932.1|2210958_2211552_+|hypothetical-protein
MKPVITSHETYQEFVIEQLRQHYTGGLLVLVHKDWPLISKLWITDLTKVATLLQDCYSVRGPVPRDPAAMLCSFLLFLLTKPEIGITAWVDEMYRVPLYAILSGFEPGDVPGVGTFYDFFALLWTASEKNLKPCKQKRKRKPEKGKKGEKAPTTTLGRIKRLANWMLLHLNTQKTLPTDSLFKFFQSQFLAVSARLI

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Crispr_ID: NC_013216_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_4

2203726-2204020

Orphan

Consensus_repeat	Method
GTTTTTAGCCTACCTATAAGGAATTGAAAT	PILER-CR
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CRISPRCasFinder
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CRT

4 spacers

The CRISPR arrays of NC_013216_4

>merge|NC_013216|4|2203726-2204020|PILER-CR,CRISPRCasFinder,CRT
GTTTTTAGCCTACCTATAAGGAATTGAAATAAAACATGCAAGTTAACATACATAAGGAAATAAATGTTTTTAGCCTACCTATAAGGAATTGAAATCTTGACAGAACACTGCGGATTGACCAGATCCACAATTGGTTTTTAGCCTACCTATAAGGAATTGAAATAGTTTTTCGGCAACCGGCACCGAAAGGTAGCTAACAGTTTTTAGCCTACCTATAAGGAATTGAAATTTTTTTCACAATATTACACCACGGAAAGGTGGTGAAGTTTTTAGCCTACCTATAAGGAATTGAAAT

>NC_013216|4|5|2203726-2204020|PILER-CR
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAACATGCAAGTTAACATACATAAGGAAATAAAT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTTGACAGAACACTGCGGATTGACCAGATCCACAATTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AGTTTTTCGGCAACCGGCACCGAAAGGTAGCTAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTTTTCACAATATTACACCACGGAAAGGTGGTGAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT

>NC_013216|4|4|2203726-2204020|CRISPRCasFinder
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAACATGCAAGTTAACATACATAAGGAAATAAAT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTTGACAGAACACTGCGGATTGACCAGATCCACAATTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AGTTTTTCGGCAACCGGCACCGAAAGGTAGCTAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTTTTCACAATATTACACCACGGAAAGGTGGTGAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT

>NC_013216|4|4|2203726-2204020|CRT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AAAACATGCAAGTTAACATACATAAGGAAATAAAT
GTTTTTAGCCTACCTATAAGGAATTGAAAT	CTTGACAGAACACTGCGGATTGACCAGATCCACAATTG
GTTTTTAGCCTACCTATAAGGAATTGAAAT	AGTTTTTCGGCAACCGGCACCGAAAGGTAGCTAACA
GTTTTTAGCCTACCTATAAGGAATTGAAAT	TTTTTTCACAATATTACACCACGGAAAGGTGGTGAA
GTTTTTAGCCTACCTATAAGGAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_157862903.1\|2188724_2189978_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_013216.1\|WP_015757564.1\|2202525_2203636_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_013216.1\|WP_157862907.1\|2206628_2206889_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|320700
NC_013216.1\|WP_015757025.1\|2186426_2187983_+\|IS5-like-element-ISDce1-family-transposase	unknown	unknown	gnl\|CDD\|372705
NC_013216.1\|WP_157862905.1\|2204075_2204222_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015757566.1\|2205947_2206325_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_013216.1\|WP_015757560.1\|2189979_2193096_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_013216.1\|WP_157863086.1\|2204235_2205183_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_052292931.1\|2206839_2208024_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320700
NC_013216.1\|WP_015757563.1\|2195365_2198542_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_013216.1\|WP_052292930.1\|2206326_2206596_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015757561.1\|2193215_2193899_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013216.1\|WP_015757558.1\|2188202_2188685_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_013216.1\|WP_015757555.1\|2183397_2184264_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NC_013216.1\|WP_052292932.1\|2210958_2211552_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_157862909.1\|2208640_2209498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377924
NC_013216.1\|WP_015757556.1\|2184337_2185897_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_013216.1\|WP_015757570.1\|2213406_2213781_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_013216.1\|WP_015757562.1\|2193882_2195304_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013216.1\|WP_157863087.1\|2208354_2208534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100119

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_157862903.1\|2188724_2189978_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.73087e-55
NC_013216.1\|WP_015757564.1\|2202525_2203636_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.02012e-43
NC_013216.1\|WP_157862907.1\|2206628_2206889_+\|hypothetical-protein	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	3.2054e-10
NC_013216.1\|WP_015757025.1\|2186426_2187983_+\|IS5-like-element-ISDce1-family-transposase	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.15362e-19
NC_013216.1\|WP_015757566.1\|2205947_2206325_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.61811e-25
NC_013216.1\|WP_015757560.1\|2189979_2193096_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_013216.1\|WP_052292931.1\|2206839_2208024_+\|M56-family-metallopeptidase	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	2.75243e-33
NC_013216.1\|WP_015757563.1\|2195365_2198542_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_013216.1\|WP_015757561.1\|2193215_2193899_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.71118e-78
NC_013216.1\|WP_015757558.1\|2188202_2188685_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.51101e-20
NC_013216.1\|WP_015757555.1\|2183397_2184264_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	1.02831e-11
NC_013216.1\|WP_157862909.1\|2208640_2209498_+\|hypothetical-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	3.43063e-14
NC_013216.1\|WP_015757556.1\|2184337_2185897_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.20815e-59
NC_013216.1\|WP_015757570.1\|2213406_2213781_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.41506e-29
NC_013216.1\|WP_015757562.1\|2193882_2195304_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.65831e-47
NC_013216.1\|WP_157863087.1\|2208354_2208534_-\|hypothetical-protein	gnl\|CDD\|100119	cd06171, Sigma70_r4, Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).	0.0012848

>NC_013216.1|WP_015757564.1|2202525_2203636_-|IS3-family-transposase
MRKTYTDTFKAQIVLELLKEEKTIAQIASESGVHPTQLKKWKTMAIDKLPTLFSDEHRAARAAKAAEEKKVNELYAEIGRLTTQLTWLKKKLALNLTKEERLALVEPDNKEISLTAQADLLGINRTRIYYKPAPPSAEEIAIRHRIDEIYTRHPYYGSRRITAQLCRENIPVNRKRVQHYMRDMGLAGICPGPNLSKRNTEHRVYPYLLRGVTANHPNHIWGIDITYIRLKEGWMYLVAILDWFSRFIISWELDQVLEIPFVLVAVKRALDKKMPLIWNSDQGSHFTSPQYTQLLQNAGVLISMDGKGRAIDNIFTERLWRSIKYEEVYLNDYMSPREARRGIRRYIDFYNNERPHQSLDYKTPFEIYY
>NC_013216.1|WP_015757563.1|2195365_2198542_+|efflux-RND-transporter-permease-subunit
MHITELSIKRPAMMTMVIMFFVVLGLYTYGRIGTELFPAINTPYVTVSVSYPGAGAEEIETQIIKPIEENLASLSQLKHINSMASVGRANVSLEFDLTADADEAAIDVQKKVDAISGRFPDGAGDPVVIKRDMNDQPIMTLSLSSKRPQYEIYDLANDIVKERLQRLTGVTEVAISGGQQREIQINIDKTRLEGYGLTLNQVISRLEEENLDDPSGRIDRPEAEYNLRVLGQFRSINDIAAIHIPTSSGYPVPLKDIATVTEGYQEVRAFSRLNGTDAVSIQIYKQSDASVVAVGKTVKNELDVIKKELPTDSELIISNDSSDYVQRSLNGTWSNILEGIITTGLALFIFLRQWRSTLIVMLAIPTSLIATVMMMYFSGFTFNMMSLMGLALCIGILVDDSIVVLENIHRHVQMGKSPYEAAIEGRREIGMAAIAITMSDIVVFMPIALMNGMVGQFFRQFGMTVVFATLFSLFISFTLTPMLASRLYKQKLNPESGEGQEHSSPEVLQKKRQSIFAFIWKHTIPLGRKVKQAYLKQLDWSFNNRKKVLAFSVLAFLLSLTVIPLKLVGMEFAPKTDQGQISVSLEMPIGTPIGKTDAAVRKLEAYLSKVPELQFYQTSVGGGGGRGASTGSNTGRISLQLYPKTERERSVWEVADGIRKWSKSFKEGRVFVTESDSMGGGGGGSAVQIVVSGKDPEKLLQLVDQVKGVVASTPGAADPNTNWRLGQPEIQVRVDHLRTAYYDLSVNDVARTVRASINGETAGVYHDGDRDVDIVVRLDGASKQDVGSLKDIKIASGNTPVSLGQVADIDFGSGPRDIRRVDRQRAINVTCNVRDRVLSDFMQEVKVKLAEIKLQPGFSITYSGQDQNMNDSFKELAAALLLSILLVYMVLVMLYESFTTPFIRMLSLPLGIMGALVALAIFRYNLNLFTIIGVIMLDGLVAKNGTLLIDYTHTMMAQGKTLREALVEAATTRLRPIIMTTITMVFGMLPTALSLTEGAENRSGMAVVLIGGLLSSTVFTLFVIPVVYTIIDDWKHNWHERRRNRLIKKGLVVDSSVI
>NC_013216.1|WP_015757562.1|2193882_2195304_+|HAMP-domain-containing-histidine-kinase
MLNRSSKKDIKTVPLLTYWTRFYFLVLMSCLLLLAVIAVIWIRLTVYDNRYQILEVRAEKLAEIYEDTAGQNLLPRNMNRTREIRSELFLVQIVDRAGNIQTIRKDKASNKNAAAINNLSKLNGQILAGQKIREQFKIGNLTWLRVGVPLYQKGIITGALYISIPASGLLADLHFMHISIFLIIAIIVLAGWLVLYFLSRKLTRPLLAIAGAAQAIASGHYEPRLPQNLKERELQQLVTSFSDMAFQLKQLERMRADLLAGVSHELRTPVTSIRGMIQAVHGKVVTGPEADEFLYISLNESIRLQQMVEDLLDFSTFEAGAEPIEKEYFNLLGLLDEVICQVSILAGYEQISFDRKGLDQEVWMTGDRGRLRQVFLNLFSNSQKASATVIKIVLRVGEDNIEIDVEDNGKGIEEADREYIFERFYRGQGKKMKPRGLGLGLTVSRMLSRAHGGDLFLLRTSSEGSVFCLTLPL
>NC_013216.1|WP_015757561.1|2193215_2193899_+|response-regulator-transcription-factor
MQTLMVVEDETPIALVLRAYLEKAGFSTYIAADGEEALLKFSEINPSLLLLDLMLPGQDGLSVLEKIRKTSTCPVIVITARGAVKDRLQGFHLGADDYIAKPFDPDEVVARVKAVLRRPARIVEADLVQFGHLTVDFTSCNAVLKGRNISLARRDWDLLSFLVRHPNQVFSRTQLLDYVWGIDYDGGDRAVDVAVKRLRQALKDWPSSEGEIATVRGTGYMLSVKQK
>NC_013216.1|WP_015757560.1|2189979_2193096_+|efflux-RND-transporter-permease-subunit
MLESLIRKRKITILFFVMITSLGFISFFQLAKQESPDIIVKTALVTTVYPGARPEKVEQTVTRKIEEQIKEMEDLKSITSTSSLGVSQIIIQAKDDVKDPKAIWDELRKKVKDAEKDLPEDAKQPIINDNLNRTFVQTINLTAPDREHLYSMREMIKNWKDQLRTLPNVSNVTVTGLPEEEVRVIVDSQKLQNYGLSWPTVLNAVKMYNDKNPLGTVEGEKRTYELTLNEVKNVDEFKNVLVSRTSGNIPVYLKDVARVDLTTKRVAEYVFQNGKPAISVSISAETGSDVPSLQKSISKMMSRLVKGIPSWSTAEVIFTQNDRVDELFSDLARETFFAVISVIFVCTLGLNLTTSFVVMMAIPISIALGIIPLNALGISLNQISIVALVIVLGILVDDAVVVNDNIERRLSVLRESPEDAAIKGSKEVSVSILTATLSTICAFGPLAFLQGDVGSFIRPIPVIISLTMLASMAMSLTIIPIFRQWHETKRIKTGLLSDKANSEAADLAAEYRKPAGLLGKQLQSVTSFYAGKLMPRMLKKPLKTGMIGVLIGTLAYGLIPFTPVQLFPNANRAEMLINVRLPVGSSINNTANLVQDLSLWLKGQATVKMVSAYAGVMAPKMFGGDTGSGSGDNIAQLVVTLDKNKLSTEDAVKKWEKELQNRYPNASVIPKELQAGPPVGNPVAVRIYGDDLEKLRNLSKQMQDVTKSVRGTTDIQDSFGIDRYAVSFDLNKENMDAKMVNPNDISRTIRLVSEGISNSQFDNGRDLIDITLFSDTQGVDSLAAIQRLTVPNALGEQVPLYQLAEIHPSFSMPSISHRNLSRVVTVTADVKGRTATDVIKELTPLLNKVKLPEGYQYEIAGETSEQSDIFIDMGKLSVIVFFLIIILITLQFYSLSIPFLVMSTIFLAFAGSLIGLFITRTPLGFMTMMGVISLTGIVVRNGIILVEFIENARHEGMELVEAVISAGESRLRPILLTSATAIAGLMPLAVAGDVLFRPLAVTIMSGLFFSTMLTLIIVPSFYTVLAQIKIRRAQKALV
>NC_013216.1|WP_157862903.1|2188724_2189978_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MIHMGRYIKQIAAAVIVILLVTIIASACNKNKSTTKDSAVTEKTVEIMKLATTKQQINSELSGNLMPLEEVTASFETGGRITSLPLKEGEYVQAGSVIAQIDDEDYMLQVENAKAASSQARAGLEQVENGATEHEKIQAQAMLDKARTSYDKAKADYDRANSLHQASAISQSDYEKAQTVMIAAQKDLENAEQAHATVIEGPRSEIKAQTRAAYQQSVVGQEKASLLLEKTRLKAPISGTIISKLSTLGQLISAGTPVYKIGAIDKLKVVLPVSDREISQWQVGKLVTLNLYGQKREGTVKYIYPATEQNTGTIGTEVWVENPDHNWFAGQVVKATSTLKEKEAVWAPIDAVVSAGTGKPYVFLYQNKKAVKRTVTVGELVNDHLEITSGVKAGDVIIASGADRLFDGDPVTPLGGE
>NC_013216.1|WP_015757558.1|2188202_2188685_+|PadR-family-transcriptional-regulator
MSGYDIKQYIEIHFPFFFVASYGTIYPTLNKMEKEGYITKQLQIQEGKPNKNVYSITEKGKEAFRAYLDSPVEPLSIRFDFIMRMHFGHHAEMDKIILWIEEEIRRTKLAIAHIEEVNRLEEKRMTPTKKICYRVGINHYTNYLATMEEALQELKASLID
>NC_013216.1|WP_015757025.1|2186426_2187983_+|IS5-like-element-ISDce1-family-transposase
MMGKLTNQINFSDTDEWYKRIPQNSFWHKVRQWAEENLSDDDFAHLYSSNRGRPSLPPVFMLKSILIQLEKQYSDRVMEESAMFDDRVKYALCLSRTPQIKLDHATLCRYRKIFLEDEQGKKILKKTIENAAEAGLFEEANKDAVDSFMIHGAAARQSTFTMIRKATARVLRQADVEGFIEDIRQKLNRDDYLNNKKPTIDWDNIEARNKLLTEMVLDARTIALWAKENKAKISEELNQCIELLQIVAEQDIEEKDGNIAIRQGVAKDRIISVEDPQMRHGRKTTSSKTDGYKGHIMSGGIENKIITAAEITAANVPDSEPVPDLIKQRQENTGSKPDSLSGDTAYGGAETRKHIKKEKIKLIAKVPPSTNVNGCFNKDKFIIDLDNKFIECPAGVRLEIDKELGEKEICCKFPKEQCQNCDLRNQCTKSKDGRTVRIHPHEALLQKARKQQQTAEFKEEYRFRSRIERIIYCVTKNGARKGKYNGLEKNRFKLQLHTALHNIKTILSLAKKNPAIVV
>NC_013216.1|WP_015757556.1|2184337_2185897_-|methyl-accepting-chemotaxis-protein
MSIRLKLSLLNTFFLILLLAVVGIFSINSIHSRLIESSQIKLKSDLGMSRNLIEQTYPGQWSVREGMLYKGDVKINDNYEIVDKIGSITGDTATIFQGDRRVSTNVKSADGKRAIGTRAAAEVIQTVITRGQTYTGKAQVVGEWNQTAYEPITDSQGKVIGMLYVGVPNNLYDQTLKKLTFEIILFGIIGLVLSILLSNYLLRRIFVKPIQHFIEFSEIISNGDFSQEITYNSKDEFGKLAQAFNKITHNLKDITGQTTVICNKATDTANTLASQAAQTSSATVENASTVSEISATVDSMAQNIKEVSGQAEEASRQAQQGQENIERIVSSMHDIECSVGHVSDSLNSLNQAIGNIGQFVDTINNIAEQTNLLALNAAIEAARAGEAGKGFAVVADEVRKLAEGSAKSASETRQIITAVQAQSNQAVKNMEVSKEEVTRGDRVIREVSQSLVAITGYIQNLSQKAQEIAQASTQVADAVQNVAATTEEQTAAIEHISCSAAEMNDYAAQMYKELQRFKL
>NC_013216.1|WP_015757555.1|2183397_2184264_+|S-layer-homology-domain-containing-protein
MKNGLITLAVFICLVFSLSGGVSAATITDVKGHWAEASINKWISAGYVSGYPEGLFKPNQKISRAEFVTLVNKAFKKQNPNSQCKFSDVKQTDWFYPGVLAGVAGGYISGYEGGTFKPGKFISRQEAAVIITRLLQLNNGSNMNFKDANSIPGWSASGIKAVVANNIMKGYSDGTFKAAQSITRAEAVTALDRAYVSFMAFQGVKGSVKMNNCPVEGALVKLFARNNPSVLKDVSTTDSNGMYKIAAQPGSYNLEVNKDGSLGYAYNISIGKGIATLQDFSLVKVSIN
>NC_013216.1|WP_157862905.1|2204075_2204222_+|hypothetical-protein
MEPKTDEWGKYADIRVIRNAETNEVESIVIMSETEANQAILKNIGPER
>NC_013216.1|WP_157863086.1|2204235_2205183_+|hypothetical-protein
MHFMNKRISCFISLTLILILLLCGCMHKESTDKDEGLSHIYSENTYGYYFDFYTADSKDKDRNGTITLNAYDDDMFFEVENSGTERELSLQIFVDYKQVPIILDDVEYDTFIIQADENFSEAYQFKLATPVDTSINHTLLAILTAGSNIYTSLADFKMSNHYSIALDHVLVFAPNNSLYQANTSVEETQVVTEYQSSGLFLNSDINGRGRKLTREITVNAGEEFQLQYQTGGYEDCEEVAIIITMGLEQVQINNQDFILCKVENGELVSGIATLKAPEEAGLYEIMGWVVKNPFDADKSEYLPLDAMHRFTLNVE
>NC_013216.1|WP_015757566.1|2205947_2206325_+|BlaI/MecI/CopY-family-transcriptional-regulator
MGTLKKLPDTEFDIMKVVWANEPPITTNIIMQQLGNEREWKAQTVISLMLRLVERGFIRTEKNGKERTYFPLISKEDYLKFETGDFMERFHGNSFASLVATLYNGNKIKDSDLDQLAKWLKEKGE
>NC_013216.1|WP_052292930.1|2206326_2206596_+|hypothetical-protein
MQNFSTTLLQCSVSMSLVTLVYAAILPLLSKRYAAKWRYMVWLVIASGWIFPFRPRIDLSFLPAQMTDIPLSPVQPIINAIPTMTDTEI
>NC_013216.1|WP_157862907.1|2206628_2206889_+|hypothetical-protein
MLAAIWILGVVCVVVYHVLRHGRFIKMVRRWSEPVTDLESLGILDSLKSEMGIKAQVGLSMCQSITSPMLVGFFRPAIFTAACQNC
>NC_013216.1|WP_052292931.1|2206839_2208024_+|M56-family-metallopeptidase
MDFSGLPFLLPPVKIADDELSLILKHELIHLKRYDLWYKALFLTATVLHWFNQVVYLMAKSAAVQCEISCDALVLQGADFQQRKQYGETIIGVVRNGAKLRTALSTNFYGGKKGMKTRISSIMDTKRKKAGVAVFCVVLVGIIMSGATLAAAANDGQNMTNYNVNYNGATENLTTDFSQYKEYSLIYDKTTNKLTYQGKLVRYFEDFYPLEEGNQAGIDFFDKDGIVDVHAVRDLAPIKNSDGSINPAGKLVGLEQSSQEDFDARDISRFLPSAAQELSQGTQGSTLPDAYSAAYSSGMTTPDELAKVYSVYEPYGLTYDKKQNRLYYNGKLVREFIDILSSNGEALESGKFKGSMRQFNSPDGKGEVDIKSVRDYTKLNADGQGELTGIEVIK
>NC_013216.1|WP_157863087.1|2208354_2208534_-|hypothetical-protein
MKSALKYLTIQQRKIVLLNILQYSDTEIANILNITRQAVNKIKRKAFYTLKIKLINYSK
>NC_013216.1|WP_157862909.1|2208640_2209498_+|hypothetical-protein
MKKILVISVLSLCLIFATKVYGSNDVIKLKLNGETVSPDVPPQIINGRVMVPLRWVAQAMNAKVSWNQNDNSVSIDNLGVVANTPDNKVKLYPFSEENGYYKGFIMDIDGKRKYFDWYNMANPSFLPKIYYDDLNNDGNKEIIVILITGEGTGVLTQQMNIINPENFEEIGVENPLNVIKERVKTQILKGTTESTVKLNIDNKEEEIKISNDPNETLLDNIIFNEFYFYLIEENKLVVYINPIISYQRAGIGIGQIKISYNFDGKAFKAQTITYNSNYYYPDPLW
>NC_013216.1|WP_052292932.1|2210958_2211552_+|hypothetical-protein
MKPVITSHETYQEFVIEQLRQHYTGGLLVLVHKDWPLISKLWITDLTKVATLLQDCYSVRGPVPRDPAAMLCSFLLFLLTKPEIGITAWVDEMYRVPLYAILSGFEPGDVPGVGTFYDFFALLWTASEKNLKPCKQKRKRKPEKGKKGEKAPTTTLGRIKRLANWMLLHLNTQKTLPTDSLFKFFQSQFLAVSARLI
>NC_013216.1|WP_015757570.1|2213406_2213781_+|BlaI/MecI/CopY-family-transcriptional-regulator
MVNITNAEMEIMRIVWDSGERLTTKDIMEKLPGKKTTTILTLAGRLIDKGVLKSVKLGRSHAHEYWAEISEEDYQKLQTRNFIRSIYNGSAKSLISTLFQDENLTEEDIAELRAFIEKQVKCDD

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Crispr_ID: NC_013216_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_5

2217925-2219152

Orphan

Consensus_repeat	Method
GTTTTTAGCCTACCTATGAGGGATTGAAAT	PILER-CR
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CRISPRCasFinder
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CRT

18 spacers

The CRISPR arrays of NC_013216_5

>merge|NC_013216|5|2217925-2219152|PILER-CR,CRISPRCasFinder,CRT
GTTTTTAGCCTACCTATGAGGGATTGAAATATTCGTCAAAGCGTGAACCGTCGGCCATTGTACCTTGTTTTTAGCCTACCTATGAGGGATTGAAATTTTCTTTTATGCTCATTGTATCATAATGATCATTGATAGTTTTTAGCCTACCTATGAGGGATTGAAATCTAATTTCTCAGGATTCGCTTTCGGTGTAATCATCACGTTTTTAGCCTACCTATGAGGGATTGAAATACTAATTTTGAATAAAGTTTTAATTTAAACTACTTTAGTTTTTAGCCTACCTATGAGGGATTGAAATATAGTGATATTAAGAGGTTGCGGGAGAAAAATTATAAAGGTTTTTAGCCTACCTATGAGGGATTGAAATAAAAATTTCCGATTAACTTTAAGACTAATGTAAAAAGTTTTTAGCCTACCTATGAGGGATTGAAATGGTGGATTTTCTTTTCAGATAGAAGGGCTAATAATAGTTTTTAGCCTACCTATGAGGGATTGAAATCTGGTTTTCCCGGGCGAACGGTGGCTTCTATTTTTGGTTTTTAGCCTACCTATGAGGGATTGAAATTCTTGCTAACTTGCATCCACTGATTGCCAGTAATCGTTTTTAGCCTACCTATGAGGGATTGAAATATTTTTCCATCCTACTCTCATCCAAGAGAGTAGGAGGTTTTTAGCCTACCTATGAGGGATTGAAATACTGAATTAAGTAAGAGTGTTTTTAATTTAGGCAGAGTTTTTAGCCTACCTATGAGGGATTGAAATACCAGATGCGGCAGCACTACTATCAGGGACGGATAAGGTTTTTAGCCTACCTATGAGGGATTGAAATTAAGCAAGTTTGTTCAACTCCTGCCGGAAGAAGTGCAGTTTTTAGCCTACCTATGAGGGATTGAAATCCCCGGACTATGTAGCAGATATTATCCTTCTTGTGGGTTTTTAGCCTACCTATGAGGGATTGAAATCCTTTAACATGCAATTCAAAGATTTGCCTTGCGTAGTTTTTAGCCTACCTATGAGGGATTGAAATGTCTGACTGGTATTCAACGAAGCCATAACCGGGTACGTTTTTAGCCTACCTATGAGGGATTGAAATCCTGATCCATACAGCTACACATCCTCCCTAATATTGAAGTTTTTAGCCTACCTATGAGGGATTGAAATTCCCCTTTGTCACCACTCTTATAAATGCCAAGTATACGTTTTTAGCCTACCTATAAGGGATTGGTGT

>NC_013216|5|6|2217925-2219085|PILER-CR
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATTCGTCAAAGCGTGAACCGTCGGCCATTGTACCTT
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TTTCTTTTATGCTCATTGTATCATAATGATCATTGATA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CTAATTTCTCAGGATTCGCTTTCGGTGTAATCATCAC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACTAATTTTGAATAAAGTTTTAATTTAAACTACTTTA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATAGTGATATTAAGAGGTTGCGGGAGAAAAATTATAAAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	AAAAATTTCCGATTAACTTTAAGACTAATGTAAAAA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	GGTGGATTTTCTTTTCAGATAGAAGGGCTAATAATA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CTGGTTTTCCCGGGCGAACGGTGGCTTCTATTTTTG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TCTTGCTAACTTGCATCCACTGATTGCCAGTAATC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATTTTTCCATCCTACTCTCATCCAAGAGAGTAGGAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACTGAATTAAGTAAGAGTGTTTTTAATTTAGGCAGA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACCAGATGCGGCAGCACTACTATCAGGGACGGATAAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TAAGCAAGTTTGTTCAACTCCTGCCGGAAGAAGTGCA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCCCGGACTATGTAGCAGATATTATCCTTCTTGTGG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCTTTAACATGCAATTCAAAGATTTGCCTTGCGTA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	GTCTGACTGGTATTCAACGAAGCCATAACCGGGTAC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCTGATCCATACAGCTACACATCCTCCCTAATATTGAA
GTTTTTAGCCTACCTATGAGGGATTGAAAT

>NC_013216|5|5|2217925-2219152|CRISPRCasFinder
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATTCGTCAAAGCGTGAACCGTCGGCCATTGTACCTT
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TTTCTTTTATGCTCATTGTATCATAATGATCATTGATA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CTAATTTCTCAGGATTCGCTTTCGGTGTAATCATCAC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACTAATTTTGAATAAAGTTTTAATTTAAACTACTTTA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATAGTGATATTAAGAGGTTGCGGGAGAAAAATTATAAAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	AAAAATTTCCGATTAACTTTAAGACTAATGTAAAAA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	GGTGGATTTTCTTTTCAGATAGAAGGGCTAATAATA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CTGGTTTTCCCGGGCGAACGGTGGCTTCTATTTTTG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TCTTGCTAACTTGCATCCACTGATTGCCAGTAATC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATTTTTCCATCCTACTCTCATCCAAGAGAGTAGGAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACTGAATTAAGTAAGAGTGTTTTTAATTTAGGCAGA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACCAGATGCGGCAGCACTACTATCAGGGACGGATAAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TAAGCAAGTTTGTTCAACTCCTGCCGGAAGAAGTGCA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCCCGGACTATGTAGCAGATATTATCCTTCTTGTGG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCTTTAACATGCAATTCAAAGATTTGCCTTGCGTA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	GTCTGACTGGTATTCAACGAAGCCATAACCGGGTAC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCTGATCCATACAGCTACACATCCTCCCTAATATTGAA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TCCCCTTTGTCACCACTCTTATAAATGCCAAGTATAC
GTTTTTAGCCTACCTATAAGGGATTGGTGT

>NC_013216|5|5|2217925-2219152|CRT
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATTCGTCAAAGCGTGAACCGTCGGCCATTGTACCTT
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TTTCTTTTATGCTCATTGTATCATAATGATCATTGATA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CTAATTTCTCAGGATTCGCTTTCGGTGTAATCATCAC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACTAATTTTGAATAAAGTTTTAATTTAAACTACTTTA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATAGTGATATTAAGAGGTTGCGGGAGAAAAATTATAAAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	AAAAATTTCCGATTAACTTTAAGACTAATGTAAAAA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	GGTGGATTTTCTTTTCAGATAGAAGGGCTAATAATA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CTGGTTTTCCCGGGCGAACGGTGGCTTCTATTTTTG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TCTTGCTAACTTGCATCCACTGATTGCCAGTAATC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ATTTTTCCATCCTACTCTCATCCAAGAGAGTAGGAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACTGAATTAAGTAAGAGTGTTTTTAATTTAGGCAGA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	ACCAGATGCGGCAGCACTACTATCAGGGACGGATAAG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TAAGCAAGTTTGTTCAACTCCTGCCGGAAGAAGTGCA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCCCGGACTATGTAGCAGATATTATCCTTCTTGTGG
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCTTTAACATGCAATTCAAAGATTTGCCTTGCGTA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	GTCTGACTGGTATTCAACGAAGCCATAACCGGGTAC
GTTTTTAGCCTACCTATGAGGGATTGAAAT	CCTGATCCATACAGCTACACATCCTCCCTAATATTGAA
GTTTTTAGCCTACCTATGAGGGATTGAAAT	TCCCCTTTGTCACCACTCTTATAAATGCCAAGTATAC
GTTTTTAGCCTACCTATAAGGGATTGGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_042315675.1\|2227914_2228610_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_157862907.1\|2206628_2206889_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|320700
NC_013216.1\|WP_015757579.1\|2225467_2226595_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349932
NC_013216.1\|WP_015757578.1\|2224583_2225453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133463
NC_013216.1\|WP_042315668.1\|2214799_2215069_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015757572.1\|2216856_2217288_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319914
NC_013216.1\|WP_015757571.1\|2213773_2213917_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015757576.1\|2222986_2223877_+\|copper-transporter	unknown	unknown	gnl\|CDD\|378653
NC_013216.1\|WP_015757575.1\|2221848_2222970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227162
NC_013216.1\|WP_052292931.1\|2206839_2208024_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320700
NC_013216.1\|WP_015757573.1\|2219562_2220390_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|377856
NC_013216.1\|WP_015757580.1\|2226621_2227704_+\|DUF3866-family-protein	unknown	unknown	gnl\|CDD\|379008
NC_013216.1\|WP_015757577.1\|2223863_2224556_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NC_013216.1\|WP_157863087.1\|2208354_2208534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100119
NC_013216.1\|WP_083773528.1\|2220597_2220726_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274325
NC_013216.1\|WP_015757570.1\|2213406_2213781_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_013216.1\|WP_052292932.1\|2210958_2211552_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_157862909.1\|2208640_2209498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377924
NC_013216.1\|WP_157863088.1\|2215102_2216113_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NC_013216.1\|WP_042317062.1\|2220876_2221647_+\|sporulation-transcription-factor-Spo0A	unknown	unknown	gnl\|CDD\|131922

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_157862907.1\|2206628_2206889_+\|hypothetical-protein	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	3.2054e-10
NC_013216.1\|WP_015757579.1\|2225467_2226595_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349932	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides. Peptidase M20 family, PeptT (tripeptide aminopeptidase; tripeptidase)-like subfamily. This group includes bacterial tripeptidases as well as predicted tripeptidases. Peptidase T acts only on tripeptide substrates, and is thus called a tripeptidase. It catalyzes the release of N-terminal amino acids with hydrophobic side chains from tripeptides with high specificity; dipeptides, tetrapeptides or tripeptides with the N-terminus blocked are not cleaved. Tripeptidases are known to function at the final stage of proteolysis in lactococcal bacteria and release amino acids from tripeptides produced during the digestion of milk proteins such as casein.	4.96722e-156
NC_013216.1\|WP_015757578.1\|2224583_2225453_+\|hypothetical-protein	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	7.49276e-06
NC_013216.1\|WP_015757572.1\|2216856_2217288_-\|VOC-family-protein	gnl\|CDD\|319914	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.29061e-52
NC_013216.1\|WP_015757576.1\|2222986_2223877_+\|copper-transporter	gnl\|CDD\|378653	pfam11382, MctB, Copper transport outer membrane protein, MctB. Outer membrane channel protein MctB in Mycobacterium tuberculosis is part of a Cu resistance mechanism that ensures low intracellular Cu levels in the bacterium. Human resisitance to bacteria, mediated via IFN-gamma-mediated activation of macrophages, may involve the use of reactive Cu(1) in the presence of hyrodgen peroxide, since acitivated Cu is toxic to bacteria. IFN-gamma stimulates the trafficking of the Cu transporter ATP7a to the vesicles that fuse with phagosomes and these phagosomes are found to have a high Cu content and an increaseed bactericidal activity against E.coli. Using MctB, Mycobacterium tuberculosis may limit the amount of excess Cu within it whole in the host.	2.61624e-60
NC_013216.1\|WP_015757575.1\|2221848_2222970_+\|hypothetical-protein	gnl\|CDD\|227162	COG4825, COG4825, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown].	9.06859e-98
NC_013216.1\|WP_052292931.1\|2206839_2208024_+\|M56-family-metallopeptidase	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	2.75243e-33
NC_013216.1\|WP_015757580.1\|2226621_2227704_+\|DUF3866-family-protein	gnl\|CDD\|379008	pfam12982, DUF3866, Protein of unknown function (DUF3866). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 352 and 374 amino acids in length.	0
NC_013216.1\|WP_015757577.1\|2223863_2224556_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.26096e-25
NC_013216.1\|WP_157863087.1\|2208354_2208534_-\|hypothetical-protein	gnl\|CDD\|100119	cd06171, Sigma70_r4, Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).	0.0012848
NC_013216.1\|WP_083773528.1\|2220597_2220726_+\|hypothetical-protein	gnl\|CDD\|274325	TIGR02860, stage_IV_sporulation_protein_B, stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else. [Cellular processes, Sporulation and germination].	4.13634e-14
NC_013216.1\|WP_015757570.1\|2213406_2213781_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.41506e-29
NC_013216.1\|WP_015757573.1\|2219562_2220390_-\|recombinase-family-protein	gnl\|CDD\|377856	pfam07508, Recombinase, Recombinase. This domain is usually found associated with pfam00239 in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.	1.02745e-16
NC_013216.1\|WP_157862909.1\|2208640_2209498_+\|hypothetical-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	3.43063e-14
NC_013216.1\|WP_157863088.1\|2215102_2216113_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	1.37717e-15
NC_013216.1\|WP_042317062.1\|2220876_2221647_+\|sporulation-transcription-factor-Spo0A	gnl\|CDD\|131922	TIGR02875, stage_0_sporulation_protein_A, sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species. [Cellular processes, Sporulation and germination].	1.72148e-147

>NC_013216.1|WP_015757572.1|2216856_2217288_-|VOC-family-protein
MNRINIITLGVRDIDKSLRFYRDGLGFQTSVNEDSPAIVFFNNSGTKLALYPLEGLAKDINEEEPPNGRGFSGITLAYNAKSIEEVDEIIKKAEEAGGIVEKSPRRVFWGGYSGYFSDPDGYYWEVAYWENWHFDENDMLIIK
>NC_013216.1|WP_157863088.1|2215102_2216113_+|IS1634-family-transposase
MEALVINRCIDPKAKINIKDWMEKTVIPAYLGIDDPTKLDKFEVYRALDRLYTLEGELQTFLFHQIKNRWPHTENAFFYDITSSYLTGSRCVIAKLGYSRDHRPDCEQIVIALMITPEGYPFYWRVMPGNTQDITTIKPLIEDVTARFALKNCTMIFDRGMVSTDNIVALESEKWTYVSAMDRDEIKKADFFNTAIPESATPDNYEQIMVMQEFIPFDENAFLYYREFIIDDRRYIVTFDVARFFDEHHAQLNNITYFVQLLTDKNQSLREAKKKRCKSLLEREVAAMLKRKHLKNGYPSILNHLIMKLSINGVTHEQFNLFNCRTRLIPWIPGNT
>NC_013216.1|WP_042315668.1|2214799_2215069_+|hypothetical-protein
MFLKKSTFKRNDKIYCHYKIVESYREDGKVKHRILFNVGTLSDEQAERLRITLNAHKNPDIIVSKTEQIVATKHAAYLDVAVLNHLWHE
>NC_013216.1|WP_015757571.1|2213773_2213917_+|hypothetical-protein
MIKMLFMSSLTGSVVSLFLILFKTGLAGVYELACHYEQMNKNSFLKN
>NC_013216.1|WP_015757570.1|2213406_2213781_+|BlaI/MecI/CopY-family-transcriptional-regulator
MVNITNAEMEIMRIVWDSGERLTTKDIMEKLPGKKTTTILTLAGRLIDKGVLKSVKLGRSHAHEYWAEISEEDYQKLQTRNFIRSIYNGSAKSLISTLFQDENLTEEDIAELRAFIEKQVKCDD
>NC_013216.1|WP_052292932.1|2210958_2211552_+|hypothetical-protein
MKPVITSHETYQEFVIEQLRQHYTGGLLVLVHKDWPLISKLWITDLTKVATLLQDCYSVRGPVPRDPAAMLCSFLLFLLTKPEIGITAWVDEMYRVPLYAILSGFEPGDVPGVGTFYDFFALLWTASEKNLKPCKQKRKRKPEKGKKGEKAPTTTLGRIKRLANWMLLHLNTQKTLPTDSLFKFFQSQFLAVSARLI
>NC_013216.1|WP_157862909.1|2208640_2209498_+|hypothetical-protein
MKKILVISVLSLCLIFATKVYGSNDVIKLKLNGETVSPDVPPQIINGRVMVPLRWVAQAMNAKVSWNQNDNSVSIDNLGVVANTPDNKVKLYPFSEENGYYKGFIMDIDGKRKYFDWYNMANPSFLPKIYYDDLNNDGNKEIIVILITGEGTGVLTQQMNIINPENFEEIGVENPLNVIKERVKTQILKGTTESTVKLNIDNKEEEIKISNDPNETLLDNIIFNEFYFYLIEENKLVVYINPIISYQRAGIGIGQIKISYNFDGKAFKAQTITYNSNYYYPDPLW
>NC_013216.1|WP_157863087.1|2208354_2208534_-|hypothetical-protein
MKSALKYLTIQQRKIVLLNILQYSDTEIANILNITRQAVNKIKRKAFYTLKIKLINYSK
>NC_013216.1|WP_052292931.1|2206839_2208024_+|M56-family-metallopeptidase
MDFSGLPFLLPPVKIADDELSLILKHELIHLKRYDLWYKALFLTATVLHWFNQVVYLMAKSAAVQCEISCDALVLQGADFQQRKQYGETIIGVVRNGAKLRTALSTNFYGGKKGMKTRISSIMDTKRKKAGVAVFCVVLVGIIMSGATLAAAANDGQNMTNYNVNYNGATENLTTDFSQYKEYSLIYDKTTNKLTYQGKLVRYFEDFYPLEEGNQAGIDFFDKDGIVDVHAVRDLAPIKNSDGSINPAGKLVGLEQSSQEDFDARDISRFLPSAAQELSQGTQGSTLPDAYSAAYSSGMTTPDELAKVYSVYEPYGLTYDKKQNRLYYNGKLVREFIDILSSNGEALESGKFKGSMRQFNSPDGKGEVDIKSVRDYTKLNADGQGELTGIEVIK
>NC_013216.1|WP_157862907.1|2206628_2206889_+|hypothetical-protein
MLAAIWILGVVCVVVYHVLRHGRFIKMVRRWSEPVTDLESLGILDSLKSEMGIKAQVGLSMCQSITSPMLVGFFRPAIFTAACQNC
>NC_013216.1|WP_015757573.1|2219562_2220390_-|recombinase-family-protein
MKAVVFVRIEEGQQGTEMIQVQLLNALTSKPGVNIVGYCFKSGLIPVNEILPIIQKEVKYSFDTIFIYNKDIISLNIKDVFMFVSECSSKGISVYTVVDGNLTEFVMSLMEAKVEQEKKDLSKVTVDRMAMAAIKGQLLGGRVTFGYRKRLDGKAEINPELVNIVREIFQLFADDCSITTITRVLSDKYGLCYKDSTKGRWRQNKVLRILENPIYNGFPAWGKTTQKNGKLIHLPKDKWIISETRIDELVIIEDDLWNKVQKKLQEKNHSKQIKS
>NC_013216.1|WP_083773528.1|2220597_2220726_+|hypothetical-protein
MFAITHVFVNDPTRGYGVLAEWMLKDAELIPDSEKEGGLKAS
>NC_013216.1|WP_042317062.1|2220876_2221647_+|sporulation-transcription-factor-Spo0A
MMRKAIKLLIADDNREFCELMKDFFSKQDDLEICGIAYNGLEAIDIIKEHKPDIAILDIIMPHLDGIGVLEKLASGIVSKRPKVIMLTAFGQESVTQRAVELGADYYVLKPFDFSVLATRVRQLSDGITVNQYISVSKPKNLDVAVTNIIHEMGVPAHIKGYHYLRDAILMVINEVNLLGAVTKELYPMIAEKYHTTPSRVERAIRHAIELAWDRGNVEMMTKYFGYTINLDRGKPTNSEFIAMVADKLRIEAKVS
>NC_013216.1|WP_015757575.1|2221848_2222970_+|hypothetical-protein
MYYKGIARIDKRTKNLVKRLISSDIAIIDHKDLDEVAAQSLLETKVRIVVNASHSLSEDYPNPGPLVLVGSGVHLIDNAGKEIMSAISEGQEIEIVENRILLNGELIAEGKLLSIDYIKEKMLETQKHINRVLSKFVQNTLEYAQNEVGMILGEVEVPETRTVFKNKHTLIVVRGKNYKEDLNAITSYINEVKPVLVAVDGGADALMEFGYQPDVIIGDMDSISDKMLRCGAELIVHAYPNGKAPGLERLNELGLSALVFPAPGTSEDIAMLLAYEKGTDLIVAVGTHSNMYDFLEKGRKGMSSTFLVRLKVGSVLVDAKGVSQLYKSNIKVRYLAQIILAALLPFTIVLVISPTTRELLRLLYIQFRLILGI
>NC_013216.1|WP_015757576.1|2222986_2223877_+|copper-transporter
MIIDFKYHIASLVAVFLALGIGILIGSTMLGSNSIVETQKQLTNNLNQQMQVLREQNKAVEMRSNNLETNNHILNEFGENVLPVLVENRLLGQKIAIIQTNNLALPNNLKTVLQTAGAKINSVTNIMDDFDISDDKLLPDTLNITPDEDRHNIVQSLSQAVAQGILLGQNTDVINSLVEKGFIKIEGTYGLPVNAVIIIGGSKDNQTVKLADIDFPIIKYFSDSNINIYGVEESDIVYSYMKDYQKKNITTVDNINTIPGQLALVLAMQGRPGNYGIKETAKSLLPPLGVAENAAK
>NC_013216.1|WP_015757577.1|2223863_2224556_+|glycosyltransferase-family-2-protein
MQLNKKVSVLIPAYNEDRFITATLQAVKSIPEVDKIVVVDDGSQDMTVELARAEGVTLIVSEQNAGKGGALNLGAELVKNDDIIVLLDADLGLTAAEARKLVLPVLANQADMTIAQFPRIKHKGGFGLVKGLAHKGIKYFTRLEMQSPLSGQRAMTKDVFNKILPFASGYGVEVALTINVARMGYKVMEVPVQMTHDLTGRNWKGFVHRGKQFKDVLKELFFLYFKKISN
>NC_013216.1|WP_015757578.1|2224583_2225453_+|hypothetical-protein
MAHLLETKCLFLFLNFLIGYIITLVLIKPIINMISTANFVRPNFRGENIPVGVGIIFLISSSFVITLNLLFLNIVPHNLTFLTAEEGFRYVIFLAGIASITCLGLIDDNWGSRDTTGLKGHLLSLFRGKITTGGLKAMGGGFISLIISLLPGQNDHIILNTLILGLSINAINLLDLRPGRAGKGFLLGALLLAAYGQARTDMLFVYIFLGLILAYLPYDLKAKVMMGDSGSNALGITLGLTAVWLLSWQLKIYLLTGLIVLHLLTEKYSLTKIIEKNIVLNYLDRLGRN
>NC_013216.1|WP_015757579.1|2225467_2226595_+|M20/M25/M40-family-metallo-hydrolase
MVNRDRLINEFLQMVQIDSLSGRERQIADYLKDKLISLGLSVTEDAAGEKAGGNAGNIIAKIPANNSSAPVIMLCSHMDTVEPGIGVKPVIKDNFICSQSDTVLGSDDKAGIAAILEAIRQVKENDVPHGGIEVVFTIWEEGGLFGAKYLDYSLLEAKIGYVLDSDGTPGTIITRAPSQDKIYAEIHGRAAHAGINPEDGINAILVAANAIAGLNLGRIDEETTCNIGVICGGKATNIVPDLVKIEGETRSLDVSKRQAQNKVICRAIEQAAERFDTKADINVEPEYTSFNLSEDSLSVKIAIKAAQNLGLTPRLEKTGGGSDANVFNNMGIETANLGIGMRKVHTKEEYIAIEDLINNARYVVEIIKTAGELSL
>NC_013216.1|WP_015757580.1|2226621_2227704_+|DUF3866-family-protein
MIRIRQGIVVEVLSSRPGYTEVFTEISGVRQKAVNYDFLTGTVKKGDRVILNTTAVHKNLGTGGTHFIMANIDNSEINARLPGHIMKMRYAPAQVKVLAVEEAESPHAEIINNTKSLEQTPVIVGTLHSMLPVAASVCCHETGGNANIVFIMTDGAALPMPLSQTVHELKQKNILSATVTYGHAFGGDYEAVNIYTALLAAKAVARADIIIVAMGPGIVGTGSEFGFTGVEQGEIINAVNILGGSPIAIPRISFADARERHRGISHHTCTSLGKIALTPCLVALPDLEQRLNDMLEKQLLLSGIRKKHVIKYYNSSHTGEVLQKYGLRVKTMGRGFSEDPAFFMACGAAAMAAVETCKKG
>NC_013216.1|WP_042315675.1|2227914_2228610_+|hypothetical-protein
MTLEEGVLFLAGGVFYTVNASGAVEGARMGNVVVIVDVIDMSTTAEAAIDAGAIAVFGASPDNAKPPVAVNPAKVAIAAGKLANLKNTGIIIVAEPRVASEQERISRLQGVMRGLEDTGAEIRAVLPNLGAETVKLFDFTGCVLIAATSTGGVAFDAAFSAGAPAVLTATVARTIQKKGAVPARAGAVRAVQIAKELNTGITVVAASANSLEDILAAEYIVRAILDNDFRG

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Crispr_ID: NC_013216_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_6

3161588-3162074

TypeIII

Consensus_repeat	Method
AGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	CRISPRCasFinder
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	PILER-CR
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACN	CRT

6 spacers

cas1,cas2,cas6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7

The CRISPR arrays of NC_013216_6

>merge|NC_013216|6|3161588-3162074|CRISPRCasFinder,PILER-CR,CRT
AGGTTTCAATTCCCTTGGGAATTATTTTGTTTTCAGACATGAAGAGATGGATTTCATTAGACGGATAAATGGTTATGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACCGTCAGCGAAGATTAAAGGCTCTTGGATTTTATGTCCAGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACGATTGTAAAAGCTAAAATTGTTACATATAAAACTATTGAGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACTTTACTATCCGATCTTGAATATCAAGTAGCATTATGTAGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTAGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTAGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC

>NC_013216|6|6|3161588-3162074|CRISPRCasFinder
AGGTTTCAATTCCCTTGGGAATTATTTTGTTTTCAGAC	ATGAAGAGATGGATTTCATTAGACGGATAAATGGTTA
TGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	CGTCAGCGAAGATTAAAGGCTCTTGGATTTTATGTCC
AGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	GATTGTAAAAGCTAAAATTGTTACATATAAAACTATTG
AGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	TTTACTATCCGATCTTGAATATCAAGTAGCATTATGT
AGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	ATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTT
AGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	ATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTT
AGTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC

>NC_013216|6|7|3161590-3162074|PILER-CR
GTTTCAATTCCCTTGGGAATTATTTTGTTTTCAGACA	TGAAGAGATGGATTTCATTAGACGGATAAATGGTTATG
TTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACC	GTCAGCGAAGATTAAAGGCTCTTGGATTTTATGTCCAG
TTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACG	ATTGTAAAAGCTAAAATTGTTACATATAAAACTATTGAG
TTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACT	TTACTATCCGATCTTGAATATCAAGTAGCATTATGTAG
TTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACA	TAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTAG
TTTCAATTCCCTATGGGAATTATTTTGTTTTCAGACA	TAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTAG
TTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC

>NC_013216|6|6|3161590-3162074|CRT
GTTTCAATTCCCTTGGGAATTATTTTGTTTTCAGACA	TGAAGAGATGGATTTCATTAGACGGATAAATGGTTAT
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	CGTCAGCGAAGATTAAAGGCTCTTGGATTTTATGTCCA
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	GATTGTAAAAGCTAAAATTGTTACATATAAAACTATTGA
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	TTTACTATCCGATCTTGAATATCAAGTAGCATTATGTA
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	ATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTA
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC	ATAGAGGTGAGGAACCGCCTAAATGAAGGCGGTTTTA
GTTTCAATTCCCTATGGGAATTATTTTGTTTTCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015758418.1\|3158068_3158890_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_013216.1\|WP_015758412.1\|3149665_3151240_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NC_013216.1\|WP_015758416.1\|3153861_3156036_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015758421.1\|3162372_3163548_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_013216.1\|WP_015758427.1\|3169053_3170709_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_013216.1\|WP_015758411.1\|3148015_3148642_-\|peptidoglycan-endopeptidase	unknown	unknown	gnl\|CDD\|366353
NC_013216.1\|WP_015758423.1\|3163945_3164767_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_013216.1\|WP_015758413.1\|3151560_3152139_-\|DUF4276-family-protein	unknown	unknown	gnl\|CDD\|379470
NC_013216.1\|WP_052292955.1\|3172717_3173599_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015758410.1\|3147520_3147718_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_013216.1\|WP_015758420.1\|3159783_3161421_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_013216.1\|WP_015758424.1\|3164763_3165894_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_013216.1\|WP_015758419.1\|3159498_3159777_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013216.1\|WP_015758417.1\|3156085_3157357_-\|TIGR02710-family-CRISPR-associated-protein	csx1	cd09747_csx1_CAS-III	gnl\|CDD\|187878
NC_013216.1\|WP_015758422.1\|3163547_3163949_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_013216.1\|WP_015758428.1\|3172124_3172322_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015758414.1\|3152135_3153317_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226984
NC_013216.1\|WP_015758426.1\|3167758_3168898_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_013216.1\|WP_015758430.1\|3173600_3174107_-\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226125
NC_013216.1\|WP_015758425.1\|3165890_3167762_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_013216.1\|WP_015758420.1\|3159783_3161421_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	6.6e-115	378.2	1.2
NC_013216.1\|WP_015758418.1\|3158068_3158890_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	5e-25	83.7	0.0
NC_013216.1\|WP_015758424.1\|3164763_3165894_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	2.2e-69	229.5	0.0
NC_013216.1\|WP_015758419.1\|3159498_3159777_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.4e-22	74.5	0.6
NC_013216.1\|WP_015758417.1\|3156085_3157357_-\|TIGR02710-family-CRISPR-associated-protein	csx1	cd09747_csx1_CAS-III	2.2e-73	242.0	0.0
NC_013216.1\|WP_015758422.1\|3163547_3163949_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	3.7e-39	128.6	3.5
NC_013216.1\|WP_015758427.1\|3169053_3170709_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	3.5e-72	238.2	0.1
NC_013216.1\|WP_015758426.1\|3167758_3168898_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.1e-29	98.3	0.0
NC_013216.1\|WP_015758423.1\|3163945_3164767_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	1.8e-60	199.6	0.0
NC_013216.1\|WP_015758425.1\|3165890_3167762_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	3.6e-65	215.4	1.3
NC_013216.1\|WP_015758421.1\|3162372_3163548_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	8.6e-47	154.6	0.0

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015758418.1\|3158068_3158890_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.25663e-19
NC_013216.1\|WP_015758412.1\|3149665_3151240_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	7.63065e-34
NC_013216.1\|WP_015758425.1\|3165890_3167762_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.59266e-51
NC_013216.1\|WP_015758421.1\|3162372_3163548_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.53656e-46
NC_013216.1\|WP_015758427.1\|3169053_3170709_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	1.97349e-71
NC_013216.1\|WP_015758411.1\|3148015_3148642_-\|peptidoglycan-endopeptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	6.85258e-41
NC_013216.1\|WP_015758423.1\|3163945_3164767_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	4.4556e-66
NC_013216.1\|WP_015758413.1\|3151560_3152139_-\|DUF4276-family-protein	gnl\|CDD\|379470	pfam14103, DUF4276, Domain of unknown function (DUF4276). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 224 amino acids in length. There is a single completely conserved residue E that may be functionally important.	1.91427e-16
NC_013216.1\|WP_015758410.1\|3147520_3147718_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	6.31035e-32
NC_013216.1\|WP_015758420.1\|3159783_3161421_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.84637e-132
NC_013216.1\|WP_015758424.1\|3164763_3165894_-\|hypothetical-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.15864e-69
NC_013216.1\|WP_015758419.1\|3159498_3159777_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.35762e-20
NC_013216.1\|WP_015758417.1\|3156085_3157357_-\|TIGR02710-family-CRISPR-associated-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	2.77526e-58
NC_013216.1\|WP_015758422.1\|3163547_3163949_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.3449e-39
NC_013216.1\|WP_015758414.1\|3152135_3153317_-\|AAA-family-ATPase	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	1.17695e-89
NC_013216.1\|WP_015758426.1\|3167758_3168898_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.87236e-20
NC_013216.1\|WP_015758430.1\|3173600_3174107_-\|DUF697-domain-containing-protein	gnl\|CDD\|226125	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown].	5.49191e-22

>NC_013216.1|WP_015758420.1|3159783_3161421_-|CRISPR-associated-endonuclease-Cas4/Cas1
MDEMCCDSQYKYLPVSAVAEILYCPRNFYYRIVEGAKEYNAHLLEGQLQEEKRNNRLAISREEYQQNKSVMVSSERLRLIGVLDAVEEGEDIYPVEYKKGELKESLNDDVQVCAQAMLLEEKLGREILRGYIYYSQSHARRVVVFDRSLRELVENTIKRAYEIIYSGQIPQPLADFRCYGCSLAGRCLPYEVNYLTGADDKTPARPLPSLNLGRVLYVDEPGAYVRKKGERVQVTRDKEVLVDIPLCNLEQLVLAGTVNISAQVIKLLLDRGTEVHFVSRAGKYYGSLQPALTKNSALRIAQHKAYQDMELRLKYAVLFVQGKLANMRTILLRYNRDLKEKQLEEAICRLKSLSKNLYKADSLNSLMGIEGAATREYFRVFNYMIKQHVPFNFQQRSRRPPGDPVNALLSFAYTLLTKDMIASVSIVGYDPYIGFLHRSDYGRPALALDFIEEFRPIVADSVVLTVLNKGMINTDDFEYKMGGCFLNDSGRKKFYRAYEERRHEMISHPLFGYRISYMRVFELQARFFAKVLRGELNEYKPFMVR
>NC_013216.1|WP_015758419.1|3159498_3159777_-|CRISPR-associated-endonuclease-Cas2
MKHFIITYDIKDDKRRSAIYKTLRNYAIPVQLSVFEACLKEENYIMLRYKLERLMRKNEDSIIFYRQCSRCEEDIIRLGASPEPFSDGIYIV
>NC_013216.1|WP_015758418.1|3158068_3158890_-|CRISPR-associated-endoribonuclease-Cas6
MLASCVVFLKVNREVLVPPSMGQVLHAFFLDRVRLLNPDLAGQLHSPTPLKPFSVSPLLGRVIYEDNRWRLFPGEAYAFRVTSIDPEFSRWLTDSWAPSLSGEIGLAGAGLEVAGWSLNTDAHSWAGSTSYEELYSNIISCPGAGDRITIEFYSPTTFRARGSNYPLPDPQKVFLNLLQKWNYYSPINLGDNFIDFIRENVFPGSYKLQTRIMHFDKYKQVGFTGTCTFRIRRQEEDIIISVLHMLAEYAFYAGVGYKTTMGMGQSRAVHIRR
>NC_013216.1|WP_015758417.1|3156085_3157357_-|TIGR02710-family-CRISPR-associated-protein
MDKVLIVTVGGSIEPIFTSITQNKPDFTYFLCSDDTQTPKNKGSYIMVNEGKDGEKPIALRTGLASSEYEIIKIKEIDNLNHCYVTAAGIIQRVRLEYPGSQLIIDYTGGTKSMSAGLAAAAMDDGRCLLSVVKGVRSDLVKVRDGTQRVSKYSADLYIYKRFKLIKELFSKYDYSGCISLILELTDFELPKDIEPEIQAYEVISKGLDAWDKFDHDKAYSFLESYAAYIKDHFGFFINVRRDKESYESEEELTRKVGYNIVFDLLLNAQRRAFRGQYDDGVARMYRALEMLGQITLLNNSPSLKSGDIQVELLPESIRDKYEAMRNTRSGKIEIGLWANFELIKDLKGPISEVIAIYRNQLINETKKRNTSILAHGITPLSKKDYEDMYEPVQLLINEVGEILKLKDRYNEEIQFPREIIFN
>NC_013216.1|WP_015758416.1|3153861_3156036_-|hypothetical-protein
MTLSFGLFLDESGDFADRYSGEKRNSLVGGVLAPAGLLTAGLAKSIFDRAFDEVELPRQKLVHMTDMPADKVSPFVLSVFNLLRENNLQPVLIENNERVLIVDPDVTFLNILAEGITRLFEHLGAVNKKVCLNVLAARRLADDKKYPGYKRVLAQEEYSSRLNERLHWSWVRKGLMQGYGSWQVSSFDIGSAREDERLMLADVVCNAWYNRNNEKRIVPGQRDQMEIQVGRFYYTVLEHGSTGAVARLMGEGAIGEAMFETFTSLLALGSTQVHKEILGKKLKELLRDCVDRLAGMSSYGRAHQLSTLRERFYYLVHVERDLHRGRQLLELVQELLIPPLKEKLPDSEGAAIDALEFDLRVINLAIATHRGNLSMAEKQVQHIRGLLPVMASRWENLNAISEFFLREAVHLTNSYDFWGTIKLMNVMYKFIEETIELFPVALPQVFGEGFKSDFKGKVLGCRLQAYAFLGRGDPDYYQRARYDSDLAIAEFEKWDDLARHYLYRCYIETDSGNYADALDWLAKSLGLGPKSEIKIIAESLSADPEGQKLFSLMHYSRLMARSALDGEEKLAGLLYKGWTEYHLENHPFLVSGSDEHPAEILFWKWGSYLLVNGSIKAGQEKHARALKICFASQENDTLYTIGVGILAEQAAILAQGGVKYKNEYKSVLKALRDSLNKLLSKEGLLISLTNYFVHWPAAVEELISNPEPDKIVRRIRKLAHSVPY
>NC_013216.1|WP_015758414.1|3152135_3153317_-|AAA-family-ATPase
MKIESLRIKNYKVFRDVSIRDLPNMAVFLGANGSGKSTLFDVFGFLHDALTDNIRSALVKRGGYKEVVSRGAKGPIEFEIKFRPNPGDPIVTYILVIEPNKRGIPVVKREVLKYRRGQKGQPWHFLDFCEGIGVAIVNEDEYVKPNAEPKREEQHLDSPEILAIKGLGQFQKFPQIAAFRRLIEGWYISDFHIQAARASQDAGYSEHLSPTGENLPLVAQFIYEHYPESFQRILQKMSERVPGVTNVQATETADGRIVLRFQDGSFKDPFVARFVSDGTIKMFAYLLLLNDPQPHPLLCIEEPENQLHPELLFELSEEFRSYSDNGGQVFISTHSPDFVNGIDISELFWLTKKDGFSIVQRAADNELVRNLVNERDLLGSLWKQGFFDGAGPR
>NC_013216.1|WP_015758413.1|3151560_3152139_-|DUF4276-family-protein
MKKIVFLLEEPSMKVLLDNLLPRLLSSLEIDTSEVSFKTIPHEGKQDLEKSIPRKLRAWREPGVRFIIVRDQDGADCIRLKKRLYQLCVDAGRDDSVVRIACNELESWFLGDLGAVAAAYNKPEIARLKNKAKFREPDNLSNAAQELKRLIPRYQKLKGARLIAPYIDYRRNHSNSFLILVEGIVRAIGSWR
>NC_013216.1|WP_015758412.1|3149665_3151240_-|recombinase-family-protein
MLLPPHVSGQKLGKYQDLKSTIDEKNVNIGGYIRVSTKKDGQKSSIQNQGKLLRQWAELNGYNLVKNYTDVKSGAYTYLRNEMQLMFKDVEEGKIQGIVAKEIARTSRDVMDILSIKRTLADHGAFFLSIKESYDSRTDDDEFLLIIHGGLAQKERKTTSSRVKITQIIKAKEGKTNVSVPAFGYMLSDDRQYLIRNPVTAPVFCQVIELFLSGWGQLKIAKWLNKQGIRTRRGGLWGTNSVRTILSNPVYLGTTIYNATTLVRDSKGQQKRVVRPREEWIVRENTHEPLITEEEYNKVQTIMRQRREKYNHEWSCDRKYLLSSILRCNVCKGKIYGFADKQCRSITYKYRCLGGNGKCNGKIKIWNMKKIDNTILAFIAEIFSDRANMINFIRRNVDLFTNDLSELVKKREVKKTLLEQINNAIKKQQLAFEQDIITVAEYKERMAELRDNKLAAQKEIDSLNRKLEQIDMIEEKIYKVYEDIKALIDNIDSLPMEEKFQLVNNFTDIFIDGNGNIVDVRFNI
>NC_013216.1|WP_015758411.1|3148015_3148642_-|peptidoglycan-endopeptidase
MSRAKIMFTSLALGISLCILPGISFAETYTVKPGDTLWKISRDYGTTVSNIQSLNNLNSALLHPGQQLVIGGQGQSPAQPQQQVSRGLGRVSTVLSFSKSLLGVPYVSGGSSPSGFDCSGYVKYVFGHFGINLPRTAGEQYNAGLKVSSAEARPGDLVAFKTGGYISHVGIYLGDSQFISATSSNGIDITSVHGPYWGSRFLGFSRIM
>NC_013216.1|WP_015758410.1|3147520_3147718_-|cold-shock-protein
MEGTVKWFNAEKGFGFIEQEGGGDIFVHFSAIQGDGFKTLDEGQKVKFEVVEGNRGPQAANVSRI
>NC_013216.1|WP_015758421.1|3162372_3163548_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MKLPLYYEHNVPKELNAGDSNAGLWYDKFCHKWIVNGGSYWNLKSFPQNKTTINPKAEWINTVTGMKIGKAERISEMNRRLVNMVEILKGKMCVLATEWRFVSGLGREHPVENGFAWHHTLGTPYLPGTSFKGVIRSWVENQEENYLPGDEKGDVINRIFGPRDKSEKKLGSVLFFDALPVDPVRLEAEIMTPHYSDYYRDKTPPADWLKPEPIQFLTVAPGQAFIFAVAPCHPEEEQSKKDVQKVFQWLEEALTWQGAGAKTAVGYGRFVQDLQAEQMWEDRRKKQQREEKQQEQERIEKELAEKRLNELASMSQVRREMEEDGVSDRPNDFMEQLTKKWLPRLEEAEPAERLEIAAILAEWYRKNKPNDWKKPKGKNKDKVEKIKSVLM
>NC_013216.1|WP_015758422.1|3163547_3163949_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MSKTLEQERAADALQKVKEVRQERKDLLIEYSSYAKSLPATILANGLGQAAATLLAKAKDNKKDAHYILYTHLREWLCSDREVVPYNKGEDLMEAITSNDRNAYIRAQAEALAWLQWLKKFAAAYLHNPEGEK
>NC_013216.1|WP_015758423.1|3163945_3164767_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKSAIIGLLAETSLHPGTEQSTGVVDMPVARESFSGYPVIVGSSMKGALRDMAHRRKLVDEDEIFGKPDKAGAVAVTDARLLLLPVRSMTGHYKWVTCPYILERLQRDRILAGMGGSLEIPRPDKEQAFSSGEENSIFLEELSFKAVKGELTKMVDVIKPLIPHKSVQERLNDQLVIINDDNFAYFAAYGLQVNARNQLNEITKTSMNLWYEETLPPDSLFYFLLISHSDKDNSLDKVKQLFNECPYLQIGGNETVGQGWCAVAWPEKQGGNK
>NC_013216.1|WP_015758424.1|3164763_3165894_-|hypothetical-protein
MTGRFWVFSALDSLFFGDGTPYNAGEGGQSRVGGCFPPFMSTLQGAVRTALAEGQGWTPKNPEKWPQELGTPEHLGNLKLMGPYLLEDGLILFPVPLLLMQKKDKDMKFSRLVPGEKVDCDLGYVCLPRLKEKLPGAKLMEKHWLTAEGLKAILAGGLPDKDDVFEQDKLWQEESRVGIERQQSTRTAAVGKIYSSMHVRLRDFEQTVSLGVYVDGIPEDWHDKVARVVRMGGEGRMASLDIKETGFELPPHPELKPRDGKVQFTVTLITPGWFDDLDRVIISGPVKSIPGELVTACIGKLKHVGGWDIKNCCPRPLKPVLPAGTTWFFEAAAAELVRVYSLHGQCIGNNNEKQKDNDKTAYGFGQIVIGRWGDEQ
>NC_013216.1|WP_015758425.1|3165890_3167762_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSKKILHFTLGPVQSFVAQARRTRDLWAGSFILSYLAGQAMYLVHRAGGKIIFPAVYDNNGIINDPLLNVIADKNEGKPISKKPVAGTLPNRFKAEIPGEFKPVECRQAVISAWREIAGAVWNKYIEPVAIYGKGTKEIWERQVNNFWEVSWVVSDNAESDDLLDRRKNWRSYVQAEEPGDKCTIMGNLQELSGHTRSLNSKKQDEFWGELRKKVKALELRKDERLCAVTIIKRLFPFTAKTVLGWDVPTSYPSNSNISAVHWVEKVMQNDTEKVVNFLEYSRNCGLAPEGGKQSAQIYCLRQMQKEKPEIAAFAKLNGNLFFESTLQNDNLWDESIKEQRKHLTKLLKEFKQSPEPFYAVLIMDGDSLGNLLRINDSAEVSQALSRFNDMVPKILEQNNGVLVYAGGDDVLALLPLEDAIKTAVEISRAYSNSFSGRLANGEATISAGIVYAHNHAPLKSILQEAHRLLDEIAKEETGRSSLAVSVWKTAGRVLQWSAPWEVITSGDSCLVDELVEDFRGKSSYEDQYNSSFFYNLRKRFDWLSGDNNILTFEEAVDLLAAEYLKNRGRENIAEATAKSRVEKLLMFCRRFLRGPDGVQSLNKLNVDGALLVRFLAEKGVVE
>NC_013216.1|WP_015758426.1|3167758_3168898_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MNNIRAVYQVVTPLFMGGANPVNSAELRPPSFKGVMRFWYRAVTLPKYKDWSEVKKKEQELFGSTDSQARFLIRLKPEGDVQICDPEYNLSGDGKSYLGYGLIKPGKNQKTVRAFIKQNARFSVTLTFRKLIDESDRKDLIMALQALGLFGGLGSRSRRGFGSACLESLELGKEEVWSAPLNTTGLRDRIEIFLNELGDLSEDLPEYTAFSRRSRVIVLPSDRDETDLFDKIGRELISYRSYGIGRDGIHMLPWNVPAEQIFSEDHDLVYDFYRGKELVKHPCRSVFGLPHNYRVSGCNVSVNAEKQERRASPLFIHLHLVGGKFAAVISVLPAVYLPEGEKIKISLKQKLQKIPVKVDYSVLYNFLERFPDRLEVRLG
>NC_013216.1|WP_015758427.1|3169053_3170709_-|TIGR02221-family-CRISPR-associated-protein
MCKLITFIGTGKYEETTYIFDTNKIYTRYFSVFSTAIIKPVEVLVVRTEEAANEHWGPLCQEFLENGFSEPVPIDVPEGKSTKELWEIFNTLIDKVDEQDSVVFDITHGFRSLSLVCFLSIAYLKFVKNVQIKGLYYGAYEARDKEKNITPVFDLTDFCSLLDWIVGVNSFIQHGSAREISSLLVMAQKKAKEKQGPARRELNSFGMLIEDISRALFTTRPFELVNKARNLKYYKEGTEQRNILERDVWEWAAPFGVLMDKIIEEYYAFAGVEDHYNPLNLERHLAAVRWYVEHNYAPQALSMMRELVISFTMCQKGEYGKAFDRGMRELTAGQLYRAKENSLSGKLWSKLSDPRNDVIHAGWRTNPRSSHKVMQETSECLALLEELFSEEGLIVCHEIPDSDGEASNLKVLITPLGMSPGLLYTAINHIEPDRILVLTSKEGRALLTEITTQAGYSGGIEVVEVKDPFAGFNELSEVIEKVMGYLEMLPPHKIYINLAGGTTLLQYITTRIAGLKVDNCEELVNVVMIDKRPVREQQENPYVMGDMLVVE
>NC_013216.1|WP_015758428.1|3172124_3172322_-|hypothetical-protein
MSKTLEQERAADALQKVKEVRQERKELLCVLKGRRDLTNSREMLKRSSVVGVQKSRGLLDLKKYL
>NC_013216.1|WP_052292955.1|3172717_3173599_-|hypothetical-protein
MILVKGMIALAKLKMPDIKGRTAGILKKTGDEIGILAVMQVLRQNQYDAIDTPEARMIVESIKRSTNDLAPDASLEEVSEYVSNVSDTSMVGFINNIKGIYHEIKFVEAENADGDDTYARLHPDVNYPGSDVILTNADGEEVEVQLKAVNSSEPVKLALEKYPDTEVYATSEVADDLAGNSMVHDSGFSNIDITNEVRQELLDLDAAAARPLDFIPHAVLWSTTLLVVPVMREWWRGNITREQCAYRVAKITGLKVVKIVAIMALLSFPPTSAPTSVYLAVKVCYHVFKAYAR
>NC_013216.1|WP_015758430.1|3173600_3174107_-|DUF697-domain-containing-protein
MSKFEEVKEKLAREYAQLESSSCSEHESVDKIIMVTSALCAGIAVQPLPFADIAILTPLQAFMAMKIGKIKGFELSTWRSKEIIVELGGLTGMGFLAQQATISLYKLGLPFAGGFFTLPIAFAFTYAMGRVVSYYFDVRRAGEPLDRDIVCKIWNAALQEGKKLGKKR

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Crispr_ID: NC_013216_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_7

3171662-3171998

TypeIII

Consensus_repeat	Method
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGAT	CRISPRCasFinder
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATA	PILER-CR

4 spacers

csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas2,cas6,WYL

The CRISPR arrays of NC_013216_7

>merge|NC_013216|7|3171662-3171998|CRISPRCasFinder,PILER-CR
TTTAAACTTATATATGGCAATTGTTTTGTTTTCAGACTACGGCTGCAAATAAATGGCTTGAGCAGGAGATACCGTAGTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATATTGCATACTCAATAAACCGGGACCGTTGTCTGAGCAAGGTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATATATATAAGGCATAGTATTAGCAGCGTACTTTAAATCGTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATGTGATAAGGAATATTGATTAAGGAGGTAATTATTAAGTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATA

>NC_013216|7|7|3171662-3171997|CRISPRCasFinder
TTTAAACTTATATATGGCAATTGTTTTGTTTTCAGAC	TACGGCTGCAAATAAATGGCTTGAGCAGGAGATACCGTA
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGAT	ATTGCATACTCAATAAACCGGGACCGTTGTCTGAGCAAG
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGAT	ATATATAAGGCATAGTATTAGCAGCGTACTTTAAATC
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGAT	GTGATAAGGAATATTGATTAAGGAGGTAATTATTAA
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGAT

>NC_013216|7|8|3171738-3171998|PILER-CR
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATA	TTGCATACTCAATAAACCGGGACCGTTGTCTGAGCAAG
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATA	TATATAAGGCATAGTATTAGCAGCGTACTTTAAATC
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATG	TGATAAGGAATATTGATTAAGGAGGTAATTATTAA
GTTTCAATTCCCTACGGGAATTATTTTGTTTTCAGATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015758418.1\|3158068_3158890_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_013216.1\|WP_015758435.1\|3179216_3180635_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_013216.1\|WP_015758425.1\|3165890_3167762_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_013216.1\|WP_015758421.1\|3162372_3163548_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_013216.1\|WP_015758436.1\|3180641_3181979_-\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
NC_013216.1\|WP_015758434.1\|3177857_3179159_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NC_013216.1\|WP_015758422.1\|3163547_3163949_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_013216.1\|WP_015758427.1\|3169053_3170709_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_013216.1\|WP_015758431.1\|3174375_3175404_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_013216.1\|WP_015758426.1\|3167758_3168898_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_013216.1\|WP_015758420.1\|3159783_3161421_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_013216.1\|WP_015758432.1\|3175396_3176698_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_013216.1\|WP_015758424.1\|3164763_3165894_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_013216.1\|WP_015758419.1\|3159498_3159777_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013216.1\|WP_015758423.1\|3163945_3164767_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_013216.1\|WP_015758428.1\|3172124_3172322_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015758433.1\|3177094_3177643_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_013216.1\|WP_015758437.1\|3182041_3182701_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238741
NC_013216.1\|WP_015758430.1\|3173600_3174107_-\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|226125
NC_013216.1\|WP_052292955.1\|3172717_3173599_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_013216.1\|WP_015758418.1\|3158068_3158890_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	5e-25	83.7	0.0
NC_013216.1\|WP_015758425.1\|3165890_3167762_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	3.6e-65	215.4	1.3
NC_013216.1\|WP_015758421.1\|3162372_3163548_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	8.6e-47	154.6	0.0
NC_013216.1\|WP_015758422.1\|3163547_3163949_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	3.7e-39	128.6	3.5
NC_013216.1\|WP_015758427.1\|3169053_3170709_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	3.5e-72	238.2	0.1
NC_013216.1\|WP_015758431.1\|3174375_3175404_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	3.6e-33	109.8	0.1
NC_013216.1\|WP_015758426.1\|3167758_3168898_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.1e-29	98.3	0.0
NC_013216.1\|WP_015758420.1\|3159783_3161421_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	6.6e-115	378.2	1.2
NC_013216.1\|WP_015758432.1\|3175396_3176698_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	2.3e-34	113.6	0.5
NC_013216.1\|WP_015758424.1\|3164763_3165894_-\|hypothetical-protein	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	2.2e-69	229.5	0.0
NC_013216.1\|WP_015758419.1\|3159498_3159777_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.4e-22	74.5	0.6
NC_013216.1\|WP_015758423.1\|3163945_3164767_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	1.8e-60	199.6	0.0

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015758418.1\|3158068_3158890_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.25663e-19
NC_013216.1\|WP_015758425.1\|3165890_3167762_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	1.59266e-51
NC_013216.1\|WP_015758421.1\|3162372_3163548_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	1.53656e-46
NC_013216.1\|WP_015758436.1\|3180641_3181979_-\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	2.93395e-60
NC_013216.1\|WP_015758434.1\|3177857_3179159_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	4.33059e-65
NC_013216.1\|WP_015758422.1\|3163547_3163949_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.3449e-39
NC_013216.1\|WP_015758427.1\|3169053_3170709_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	1.97349e-71
NC_013216.1\|WP_015758431.1\|3174375_3175404_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	5.69041e-27
NC_013216.1\|WP_015758426.1\|3167758_3168898_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.87236e-20
NC_013216.1\|WP_015758420.1\|3159783_3161421_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.84637e-132
NC_013216.1\|WP_015758432.1\|3175396_3176698_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	6.20911e-28
NC_013216.1\|WP_015758424.1\|3164763_3165894_-\|hypothetical-protein	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.15864e-69
NC_013216.1\|WP_015758419.1\|3159498_3159777_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.35762e-20
NC_013216.1\|WP_015758423.1\|3163945_3164767_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	4.4556e-66
NC_013216.1\|WP_015758433.1\|3177094_3177643_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	4.70058e-37
NC_013216.1\|WP_015758437.1\|3182041_3182701_-\|VWA-domain-containing-protein	gnl\|CDD\|238741	cd01464, vWA_subfamily, VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have no assigned function. This subfamily is typified by the presence of a conserved MIDAS motif.	8.01104e-71
NC_013216.1\|WP_015758430.1\|3173600_3174107_-\|DUF697-domain-containing-protein	gnl\|CDD\|226125	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown].	5.49191e-22
NC_013216.1\|WP_015758435.1\|3179216_3180635_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.89256e-07

>NC_013216.1|WP_015758427.1|3169053_3170709_-|TIGR02221-family-CRISPR-associated-protein
MCKLITFIGTGKYEETTYIFDTNKIYTRYFSVFSTAIIKPVEVLVVRTEEAANEHWGPLCQEFLENGFSEPVPIDVPEGKSTKELWEIFNTLIDKVDEQDSVVFDITHGFRSLSLVCFLSIAYLKFVKNVQIKGLYYGAYEARDKEKNITPVFDLTDFCSLLDWIVGVNSFIQHGSAREISSLLVMAQKKAKEKQGPARRELNSFGMLIEDISRALFTTRPFELVNKARNLKYYKEGTEQRNILERDVWEWAAPFGVLMDKIIEEYYAFAGVEDHYNPLNLERHLAAVRWYVEHNYAPQALSMMRELVISFTMCQKGEYGKAFDRGMRELTAGQLYRAKENSLSGKLWSKLSDPRNDVIHAGWRTNPRSSHKVMQETSECLALLEELFSEEGLIVCHEIPDSDGEASNLKVLITPLGMSPGLLYTAINHIEPDRILVLTSKEGRALLTEITTQAGYSGGIEVVEVKDPFAGFNELSEVIEKVMGYLEMLPPHKIYINLAGGTTLLQYITTRIAGLKVDNCEELVNVVMIDKRPVREQQENPYVMGDMLVVE
>NC_013216.1|WP_015758426.1|3167758_3168898_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MNNIRAVYQVVTPLFMGGANPVNSAELRPPSFKGVMRFWYRAVTLPKYKDWSEVKKKEQELFGSTDSQARFLIRLKPEGDVQICDPEYNLSGDGKSYLGYGLIKPGKNQKTVRAFIKQNARFSVTLTFRKLIDESDRKDLIMALQALGLFGGLGSRSRRGFGSACLESLELGKEEVWSAPLNTTGLRDRIEIFLNELGDLSEDLPEYTAFSRRSRVIVLPSDRDETDLFDKIGRELISYRSYGIGRDGIHMLPWNVPAEQIFSEDHDLVYDFYRGKELVKHPCRSVFGLPHNYRVSGCNVSVNAEKQERRASPLFIHLHLVGGKFAAVISVLPAVYLPEGEKIKISLKQKLQKIPVKVDYSVLYNFLERFPDRLEVRLG
>NC_013216.1|WP_015758425.1|3165890_3167762_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSKKILHFTLGPVQSFVAQARRTRDLWAGSFILSYLAGQAMYLVHRAGGKIIFPAVYDNNGIINDPLLNVIADKNEGKPISKKPVAGTLPNRFKAEIPGEFKPVECRQAVISAWREIAGAVWNKYIEPVAIYGKGTKEIWERQVNNFWEVSWVVSDNAESDDLLDRRKNWRSYVQAEEPGDKCTIMGNLQELSGHTRSLNSKKQDEFWGELRKKVKALELRKDERLCAVTIIKRLFPFTAKTVLGWDVPTSYPSNSNISAVHWVEKVMQNDTEKVVNFLEYSRNCGLAPEGGKQSAQIYCLRQMQKEKPEIAAFAKLNGNLFFESTLQNDNLWDESIKEQRKHLTKLLKEFKQSPEPFYAVLIMDGDSLGNLLRINDSAEVSQALSRFNDMVPKILEQNNGVLVYAGGDDVLALLPLEDAIKTAVEISRAYSNSFSGRLANGEATISAGIVYAHNHAPLKSILQEAHRLLDEIAKEETGRSSLAVSVWKTAGRVLQWSAPWEVITSGDSCLVDELVEDFRGKSSYEDQYNSSFFYNLRKRFDWLSGDNNILTFEEAVDLLAAEYLKNRGRENIAEATAKSRVEKLLMFCRRFLRGPDGVQSLNKLNVDGALLVRFLAEKGVVE
>NC_013216.1|WP_015758424.1|3164763_3165894_-|hypothetical-protein
MTGRFWVFSALDSLFFGDGTPYNAGEGGQSRVGGCFPPFMSTLQGAVRTALAEGQGWTPKNPEKWPQELGTPEHLGNLKLMGPYLLEDGLILFPVPLLLMQKKDKDMKFSRLVPGEKVDCDLGYVCLPRLKEKLPGAKLMEKHWLTAEGLKAILAGGLPDKDDVFEQDKLWQEESRVGIERQQSTRTAAVGKIYSSMHVRLRDFEQTVSLGVYVDGIPEDWHDKVARVVRMGGEGRMASLDIKETGFELPPHPELKPRDGKVQFTVTLITPGWFDDLDRVIISGPVKSIPGELVTACIGKLKHVGGWDIKNCCPRPLKPVLPAGTTWFFEAAAAELVRVYSLHGQCIGNNNEKQKDNDKTAYGFGQIVIGRWGDEQ
>NC_013216.1|WP_015758423.1|3163945_3164767_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MKSAIIGLLAETSLHPGTEQSTGVVDMPVARESFSGYPVIVGSSMKGALRDMAHRRKLVDEDEIFGKPDKAGAVAVTDARLLLLPVRSMTGHYKWVTCPYILERLQRDRILAGMGGSLEIPRPDKEQAFSSGEENSIFLEELSFKAVKGELTKMVDVIKPLIPHKSVQERLNDQLVIINDDNFAYFAAYGLQVNARNQLNEITKTSMNLWYEETLPPDSLFYFLLISHSDKDNSLDKVKQLFNECPYLQIGGNETVGQGWCAVAWPEKQGGNK
>NC_013216.1|WP_015758422.1|3163547_3163949_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MSKTLEQERAADALQKVKEVRQERKDLLIEYSSYAKSLPATILANGLGQAAATLLAKAKDNKKDAHYILYTHLREWLCSDREVVPYNKGEDLMEAITSNDRNAYIRAQAEALAWLQWLKKFAAAYLHNPEGEK
>NC_013216.1|WP_015758421.1|3162372_3163548_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MKLPLYYEHNVPKELNAGDSNAGLWYDKFCHKWIVNGGSYWNLKSFPQNKTTINPKAEWINTVTGMKIGKAERISEMNRRLVNMVEILKGKMCVLATEWRFVSGLGREHPVENGFAWHHTLGTPYLPGTSFKGVIRSWVENQEENYLPGDEKGDVINRIFGPRDKSEKKLGSVLFFDALPVDPVRLEAEIMTPHYSDYYRDKTPPADWLKPEPIQFLTVAPGQAFIFAVAPCHPEEEQSKKDVQKVFQWLEEALTWQGAGAKTAVGYGRFVQDLQAEQMWEDRRKKQQREEKQQEQERIEKELAEKRLNELASMSQVRREMEEDGVSDRPNDFMEQLTKKWLPRLEEAEPAERLEIAAILAEWYRKNKPNDWKKPKGKNKDKVEKIKSVLM
>NC_013216.1|WP_015758420.1|3159783_3161421_-|CRISPR-associated-endonuclease-Cas4/Cas1
MDEMCCDSQYKYLPVSAVAEILYCPRNFYYRIVEGAKEYNAHLLEGQLQEEKRNNRLAISREEYQQNKSVMVSSERLRLIGVLDAVEEGEDIYPVEYKKGELKESLNDDVQVCAQAMLLEEKLGREILRGYIYYSQSHARRVVVFDRSLRELVENTIKRAYEIIYSGQIPQPLADFRCYGCSLAGRCLPYEVNYLTGADDKTPARPLPSLNLGRVLYVDEPGAYVRKKGERVQVTRDKEVLVDIPLCNLEQLVLAGTVNISAQVIKLLLDRGTEVHFVSRAGKYYGSLQPALTKNSALRIAQHKAYQDMELRLKYAVLFVQGKLANMRTILLRYNRDLKEKQLEEAICRLKSLSKNLYKADSLNSLMGIEGAATREYFRVFNYMIKQHVPFNFQQRSRRPPGDPVNALLSFAYTLLTKDMIASVSIVGYDPYIGFLHRSDYGRPALALDFIEEFRPIVADSVVLTVLNKGMINTDDFEYKMGGCFLNDSGRKKFYRAYEERRHEMISHPLFGYRISYMRVFELQARFFAKVLRGELNEYKPFMVR
>NC_013216.1|WP_015758419.1|3159498_3159777_-|CRISPR-associated-endonuclease-Cas2
MKHFIITYDIKDDKRRSAIYKTLRNYAIPVQLSVFEACLKEENYIMLRYKLERLMRKNEDSIIFYRQCSRCEEDIIRLGASPEPFSDGIYIV
>NC_013216.1|WP_015758418.1|3158068_3158890_-|CRISPR-associated-endoribonuclease-Cas6
MLASCVVFLKVNREVLVPPSMGQVLHAFFLDRVRLLNPDLAGQLHSPTPLKPFSVSPLLGRVIYEDNRWRLFPGEAYAFRVTSIDPEFSRWLTDSWAPSLSGEIGLAGAGLEVAGWSLNTDAHSWAGSTSYEELYSNIISCPGAGDRITIEFYSPTTFRARGSNYPLPDPQKVFLNLLQKWNYYSPINLGDNFIDFIRENVFPGSYKLQTRIMHFDKYKQVGFTGTCTFRIRRQEEDIIISVLHMLAEYAFYAGVGYKTTMGMGQSRAVHIRR
>NC_013216.1|WP_015758428.1|3172124_3172322_-|hypothetical-protein
MSKTLEQERAADALQKVKEVRQERKELLCVLKGRRDLTNSREMLKRSSVVGVQKSRGLLDLKKYL
>NC_013216.1|WP_052292955.1|3172717_3173599_-|hypothetical-protein
MILVKGMIALAKLKMPDIKGRTAGILKKTGDEIGILAVMQVLRQNQYDAIDTPEARMIVESIKRSTNDLAPDASLEEVSEYVSNVSDTSMVGFINNIKGIYHEIKFVEAENADGDDTYARLHPDVNYPGSDVILTNADGEEVEVQLKAVNSSEPVKLALEKYPDTEVYATSEVADDLAGNSMVHDSGFSNIDITNEVRQELLDLDAAAARPLDFIPHAVLWSTTLLVVPVMREWWRGNITREQCAYRVAKITGLKVVKIVAIMALLSFPPTSAPTSVYLAVKVCYHVFKAYAR
>NC_013216.1|WP_015758430.1|3173600_3174107_-|DUF697-domain-containing-protein
MSKFEEVKEKLAREYAQLESSSCSEHESVDKIIMVTSALCAGIAVQPLPFADIAILTPLQAFMAMKIGKIKGFELSTWRSKEIIVELGGLTGMGFLAQQATISLYKLGLPFAGGFFTLPIAFAFTYAMGRVVSYYFDVRRAGEPLDRDIVCKIWNAALQEGKKLGKKR
>NC_013216.1|WP_015758431.1|3174375_3175404_-|WYL-domain-containing-protein
MHDEVIFRLMRIMQLLEGYPEGLSAEQLSKITGYSEIIILEDLNWVAMQSEYAQHYSLFPDPNLEEAYEGDCEVHDPKIKWFLMSRKNSTPGISLTAAESAGLLWALEENPPSEELRWLRECLRSRVLPHAGQNSVREFSSTIKVKSGVKLAGAQYLSQLRLAVIQERLVQMLYYAKNYSEDREVRLMPLGLVFYNGTGSWYLIGREFSGKDNHVNRELVFHLERIKSLVVLGECFTYPIDFSLKDFLRCRWGMDMSPPVQVKVKFYDRASVHEKVRSELKRRGLTPPQKQLDGSLLWEGEIRGKNNFTKWILSFGSAAEIIEPGEMRRRVISIARTIYERL
>NC_013216.1|WP_015758432.1|3175396_3176698_-|WYL-domain-containing-protein
MAKQKEVEKRRTEILEYLSIQEDRQASFNDLAIYFKLSARAIKLDCIELEKQSLVVRYRGGVKITGVGLECLGNISKLTARPLKRKHLRQLVILRILSNLIGTAKHRAGLTFTEIYNATGLGDWGCGDKVELGFTKDAVKNDLEELSVEGLVGCTGDRYHPGSFLMAPFVLTNRQSQQLQHYLNSLPAVLPMEPNEINSIREKLNASLVVGGDDARYEEQVKLFLREVMHGYLPEESQNVEVAQTLRECVVRRKVVEVIYRGRRARLKPLGVIYHWRRGLWYVIAFGGRAQGKVPLVFRLDRMEKAEQLDRDFAMPGEEEVSQLLSRYWGVSGDKTFQVEVRFRNTSWDTNAVERMICEMNYRKSYYDGCQVKLYPDGSAILRDEITGLSEFKSWLRGYGDVVEVISPLWLQESVKETAGRMLAVYRGEDPYA
>NC_013216.1|WP_015758433.1|3177094_3177643_-|Uma2-family-endonuclease
MQIEVADRLFTYEDYLKIEDDNQYELIGGKLILVPAPRTIHQKITRKLLQTIGIFVDKNNLGELYGAPIDVLLSEKEKPQPDIVFISKERLDIITEMNIQGTPDLVVEILSPSTGKYDKVEKSKMYYKHGVKEYWIVDPVHKVIEIFVAGEKNWILFQSYGEDNTLTSPLLDGLEIQLKGVI
>NC_013216.1|WP_015758434.1|3177857_3179159_-|TerD-family-protein
MQEQINGMTTGGCLKLKAGEYKGPVNINKPVTIEGSNTTIWAGSSPVIDVTKEGVVLKNLQVEATRGSNDIAIRSEDSYGVLVENVEVRGRVTGFGAESGVWDFPDSLNFGQLPHSRAIILKMRLSLPVSCKIISHIAGIIIEPELVGPGTVEVLIKINPLFQNSILCGSFLLVSKFIRRIPVNAIVTGSAFVSNGQLIWSPSGACLPEGAPEPVAEYYQNTGVNTNDPAVDKKLTPSDKNYGLVQETGSIPVLKKGQRIELSQFNPGDKKIFVGIGWDNRLAAPIEIDAVAFILGGNKKIIRDEDLIFYGNRSSSDGSISLLGQGKGLQEKISIDLSRLPQQYERIVIALAIYEGKKKQQYFNQLERVYIKVSDESGKPMFYFEVKDFALMENSLIIAEIYRYKGKWKLAAVGAGYRDDLKALCEMYGVEIM
>NC_013216.1|WP_015758435.1|3179216_3180635_-|serine/threonine-protein-kinase
MAKRKTAKNPVATLIDGTELEYLPEIIGEGSEGIVHFTADRLSIIKFYKDEADLKDPERKDRIDHIVNKYNPTRDKISGDYWSNLYCWPAGLVVSPKLGVKVPVYPAKFFTSDGIEKKLSWFVNPKTRNFVPAAERGTWLGHLKMAITMARSTRRLHSAGLAHSDLSYNNFLGDPVSGSTVMIDVDGLVVPGLHPPKIAGTPGLIAPEVLMGTAEPSIRTDLHALAVLIYQTLLFRHPLKGPRINSTSSAEEDEQLSLGEKALFIENPTDHSNRPAKLVTGYECMGPYLSEVIPQSFVHALHSPDNRPTALDWESALVRTADLIHPCSNEKCEMKWFVLSKAMDYCCPFCKQKIALPFVPILHCYREQPGKPGNFLNEKHRLVVWHGMYIYKWHVFDNIWAGENVDKTPQGYFVYHENNWYLYNMEMDLKVIENGYPKPVPKGQHVRLSEGLQLRLSSESHGRLILTQFLRI
>NC_013216.1|WP_015758436.1|3180641_3181979_-|protein-phosphatase-2C-domain-containing-protein
MNLVVNIGRYYTGKADMDEAKTKLIDMGFTIEETRELVMVKAADAGRTTLLEKLNSGSMSIYEFFSEAEKLYEKPNHKIIKTKNDRIIKSSDYDIVGDVLLPTRDIKLNLNYTKDKKVIQTDKIILSFRQSENKQSVIKQTEPPVKDSREKPAPKEEEVVYPRWRDLPPADQEDWVEINDSAFKEWNGWGICAASRRGKTHAHEGSHRDDSFGFDFENGWSILAAADGAGSCRLSRVGSKIGCEMAVKTLKQFLKDYKVKQIEGVNIPEETDLIKIRTFLVDTMHEVLISLKEEAAARKIEFDLLSTTMLIAVHREWMGKSLIASIQVGDGAIALWHGGSSVSILGVADSGEYASETKFITTKDIEKEFEHKVFFAIKPEVDAVAVMTDGISDDFFPVDTMMPKMFEYVYQIVLGENPADKLVDWLGYEKRGSFDDRTIVFLHRR
>NC_013216.1|WP_015758437.1|3182041_3182701_-|VWA-domain-containing-protein
MFNEVEGLSRRLPVYLLLDRSGSMFGEPIEAVKQGVKYMISELKKEPQAIETAYISVITFGSDARQDVQLTELAAFKEPQIEANGTTSLGAALHILNNCFDNEVRKSTPTQKGDYKPLVFIMTDGEPTDDWENAAREIKQKSGKVANIVAVGCGPDVNTDTLKKITDIVLLMSSYQPEDFKQFFRWVSQSVKQASIKFTKDSDQPTNLPAPPPTIQIIP

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Crispr_ID: NC_013216_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_8

3189932-3199658

TypeI-B

Consensus_repeat	Method
ATTTCAATACATCAAATGTGACGGTTTCCC	PILER-CR
ATTTCAATACATCAAATGTGACGGTTTCCC	CRISPRCasFinder
NNNNNNATTTCAATACATCAAATGTGACGGTTTCCC	CRT

147 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_013216_8

>merge|NC_013216|8|3189932-3199658|PILER-CR,CRISPRCasFinder,CRT
ATTTCAATACATCAAATGTGACGGTTTCCCTGTCCTTGGGCGGTGGGTTGTGACTACGATAGTTATATTTCAATACATCAAATGTGACGGTTTCCCGAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAAATTTCAATACATCAAATGTGATGGTTTCCCGAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAAATTTCAATACATCAAATGTGATGGTTTCCCCAGTGTACTTGAATGGCCTGCACCAAAGTTTGAGATATTTCAATACATCAAATGTGACGGTTTCCCTTGGACAACCGGCCATGCCGGAGATATAAACAGCTATTTCAATACATCAAATGTGACGGTTTCCCTTTTGGTGCTGCTAGGAGTTCCATAATTACAATGGTATTTCAATACATCAAATGTGACGGTTTCCCATTACTGTTAATTTTGAAGGCGATTTAGTTTTCTTCATTTCAATACATCAAATGTGACGGTTTCCCTTACAAGCCAGCGCTGGTAGTCTAAACTATCAATATTTCAATACATCAAATGTGACGGTTTCCCGCCGGAAACTTGTCGGCAAAATTACGGCGTAAATCATTTCAATACATCAAATGTGACGGTTTCCCCCTTTAAAGCCTTGTGGTGCCTGTGTAGTTTTTCGAATTTCAATACATCAAATGTGACGGTTTCCCACGGACAGAATGTGCGAAGGGAGGTGAAAAAAGGTATTTCAATACATCAAATGTGACGGTTTCCCAGATAATCGCAAAGTATGCGGTGATGCCAGTTAACTATTTCAATACATCAAATGTGACGGTTTCCCTCACTGACCTACAACCTTCTGTAACCCACCAACCAAATTTCAATACATCAAATGTGACGGTTTCCCTTTTTTTACATCAATTATAACATTAATGAAGTTAATTATTTCAATACATCAAATGTGACGGTTTCCCCAGTCCGGTGTTAAGGAACAAATTTATTTTGTTGTATTTCAATACATCAAATGTGACGGTTTCCCTTTTGATTATGAGGTGATAATATGCTTTCTATCTTATTTCAATACATCAAATGTGACGGTTTCCCATGGCCAGGACCTCCGGAGCCGAACCGGAAAGAAACATTTCAATACATCAAATGTGACGGTTTCCCACCAAGCACCATTGTAACAAACACAATAAGTGCCATATTTCAATACATCAAATGTGACGGTTTCCCTCACTGACCTACAACCTTCTGTAACCCACCAACAAGATTTCAATACATCAAATGTGACGGTTTCCCGAAAAATATTTCGTTGGTGATTGTATTATGTTCGTAATTTCAATACATCAAATGTGACGGTTTCCCTTTTATTAAGCTTGTCTTGCTCACGCTTAATATCGGATTTCAATACATCAAATGTGACGGTTTCCCTCGCATTTCCCACACATCAAAATATCCTCAGGACGTATTTCAATACATCAAATGTGACGGTTTCCCCCCTCATGTGCAATAGATTTCTAGAAAATTATATCAATTTCAATACATCAAATGTGACGGTTTCCCTTTTGTGGGTTTTTTCGCTGAATAGCCATGGCATAATTTCAATACATCAAATGTGACGGTTTCCCCGTTCCTGTTTTCGCAACATATCAGACAAATTCTCTATTTCAATACATCAAATGTGACGGTTTCCCCTATAAACCTGGCACTAGGATAATCAAAACCAAAGAAATTTCAATACATCAAATGTGACGGTTTCCCGTCAGTCCCTGGGTATTGTCCTAACCGGTTCCTTTAATTTCAATACATCAAATGTGACGGTTTCCCAATAAAGAAAGGCGTAGCTTCGAAGGTAGCTAGTTATTTCAATACATCAAATGTGACGGTTTCCCTTTACTTCGGTATACTGGCATACTAAAAGTATACCAATTTCAATACATCAAATGTGACGGTTTCCCTTTTAGCACTCATAGCTATTTTAATTCCTGTTGGCTATTTCAATACATCAAATGTGACGGTTTCCCAATTTAGGAACAACTAAACCTAAATTATAAAACCTGATTTCAATACATCAAATTTGACGGTTTCCCACGTATATGGATGGTGGCAAAAGCGGAAAAAAAAGATTTCAATACATCAAATGTGACGGTTTCCCAACAGAGGGCAGAGGTTACTGTTTGGGAGGTAAGTATTTCAATACATCAAATGTGACGGTTTCCCTTGATAGGGGGGGTTATAAGTGTTAGCTTTAATTACATTTCAATACATCAAATGTGACGGTTTCCCTTTCCGGAGTTCGTTTATTAGGTGTCTTATCAGCAAATTTCAATACATCAAATGTGACGGTTTCCCTCCTAAGCCTTATATTTAAAGGATTTTCAAGTCAAAATTTCAATACATCAAATGTGACGGTTTCCCCAGCTTGTTGGCCAAACTGCACAGGATGTTATTGTATTTCAATACATCAAATGTGACGGTTTCCCCCCTTCAAATTCGGATTACAGGCAATATAATACAAAATTTCAATACATCAAATGTGACGGTTTCCCATAGAAGGTGAACAAATACCTTTAGATTGGTATTCATTTCAATACATCAAATGTGACGGTTTCCCCAACCTGGGCAGCAGCCTTGGCATCATGCTGATATATTTCAATACATCAAATGTGACGGTTTCCCTTGCGCCTGTTAATGAAGCTCAGGCGATTGTTCCTTATTTCAATACATCAAATGTGACGGTTTCCCTACCCTTCCTCATGCCAGCGTTCATAACGTGAAACTATTTCAATACATCAAATGTGACGGTTTCCCGTTTTTCATCCAACTGTTATGATGGTCAGTATTTCTTATTTCAATACATCAAATGTGACGGTTTCCCTCACTGACCTACAACCTTCTGTAACCCACCAAACAAATTTCAATACATCAAATGTGACGGTTTCCCTGCTGGCGCAAAATAATACCCGGGAAGGTGATTTCAATTTCAATACATCAAATGTGACGGTTTCCCGAAATTAAAGCATATGTGGAGGCAGAGCTTAGGGATTTCAATACATCAAATGTGACGGTTTCCCAACCAATTGACCAACGCAAAAAAATCAGAACTGCTATTTCAATACATCAAATGTGACGGTTTCCCGTGGATCTTTAAATATAACTACAGATGCTAATGAAAAATTTCAATACATCAAATGTGACGGTTTCCCTCAGGGACTTCATGTTACTAACCGACTGGAACCGTGATTTCAATACATCAAATGTGACGGTTTCCCAAAAAACAAAGGATGGTAAGTACCATCCTTAAGAGGATTTCAATACATCAAATGTGACGGTTTCCCAACGCCAAAATTATCATATATTGGACAATCATTAAAATTTCAATACATCAAATGTGACGGTTTCCCTACCATTTTAAAATTAACTATGTAAACTTTTCATTCATTTCAATACATCAAATGTGACGGTTTCCCATTCGTAATATAAATAAATATGAGTGCTATTGTGTAATTTCAATACATCAAATGTGACGGTTTCCCATAAGAATTTTCTCCTGTTCATCTGTCGGCAGAGCATATTTCAATACATCAAATGTGACGGTTTCCCTTAACAGCCTCAGACACTGTAATATTTAATGATTTATTTCAATACATCAAATGTGACGGTTTCCCTTGATAACCTATTAACCAACTGGATAATATCTGTAAAATTTCAATACATCAAATGTGACGGTTTCCCGTACTTCTTAAACACCATATTACTACACACAAAGTGATTTCAATACATCAAATGTGACGGTTTCCCAGAGGGTTAGCAAGCAAATACAGGTATCATTATACCATTTCAATACATCAAATGTGACGGTTTCCCCTTTTAACTTTTACCTTTTTTACAATCTCTAACCAACATTTCAATACATCAAATGTGACGGTTTCCCTATCCAGCATTCTTCATCTTGATCGTATTCAACTGAATTTCAATACATCAAATGTGACGGTTTCCCTTATCCAGCATTCTTCATCTTGATCGTATTCAACTGAATTTCAATACATCAAATGTGACGGTTTCCCTTTTTCTTTTCAAGCAAAAACTTTGCAGCCTCCAATATTTCAATACATCAAATGTGACGGTTTCCCACAGAATGAAAGATTTTAGACTAAATATGGGTAAATATTTCAATACATCAAATGTGACGGTTTCCCTTTAATTAATACCCAAATATAAGGAGGTCATACAAATTTCAATACATCAAATGTGACGGTTTCCCAAAAAAGAAAGCTCCCGGTTATGGAATTATACCTAAATTTCAATACATCAAATGTGACGGTTTCCCGAAGTTGAAATTGGTAACATGAGTAACATTAATAAATTTCAATACATCAAATGTGACGGTTTCCCCAGTATCGCGGGTCAAGATTACCGGAAGGTGCTACATTTCAATACATCAAATGTGACGGTTTCCCTTATTGTATTTATGCTTAATAACCGTACCCATAAAAGATTTCAATACATCAAATGTGACGGTTTCCCCTGATATTGAAACAATGCTTAAAAAGACATTATGCAAATTTCAATACATCAAATGTGACGGTTTCCCCTAGAAATGTTCAAGAATTTTGCCGCAAGATTATGACATTTCAATACATCAAATGTGACGGTTTCCCTTATATATTTGATTGCTAATACTGGTATTAGAAGAGGATTTCAATACATCAAATGTGACGGTTTCCCGATAATGAATAGAATATAATTATAATTGTTCACACATTTCAATACATCAAATGTGACGGTTTCCCTAATATTTTCATTAGATTCCTTCTTATTGATTGTTATTTCAATACATCAAATGTGACGGTTTCCCAGAATCTGGAGAATTAATTAACGTAATGTATCAAGGATTTCAATACATCAAATGTGACGGTTTCCCGGCATGGCGCGGATGCCTGGGGTTGGAACCAACGCATTTCAATACATCAAATGTGACGGTTTCCCCAGGGAAGCTTATATAATAAGTGTGTTTGGGTTGTGATTTCAATACATCAAATGTGACGGTTTCCCTTGATAGTGCTGATATAAGTATTAGCCGCTACTTTAATTTCAATACATCAAATGTGACGGTTTCCCCCGGAAGAAACGCATTTTTTAAGGTATTTGAGGCATATTTCAATACATCAAATGTGACGGTTTCCCCCATAAGCCGGTGTAGTTAAAAAAGGAGGTGTTTTATTTCAATACATCAAATGTGACGGTTTCCCGGGATGTCAGAAATGATTTTGAGCAACACATTAACCGATTTCAATACATCAAATGTGACGGTTTCCCATATTTCGTTAACGAACCCGTGCTAGCTAGAATAACATTTCAATACATCAAATGTGACGGTTTCCCTACTCAGGCGGTGATGAACCGTTTAAATGCTATGGCATTTCAATACATCAAATGTGACGGTTTCCCCCTACCATATAGCAAAACAGAAGCTTACATTGACACATTTCAATACATCAAATGTGACGGTTTCCCTTGTTAGCGCATTCAGTACATAAGACAAAAATGCCAATTTCAATACATCAAATGTGACGGTTTCCCTTACGATTCGGAGGCTATTAAAGAGCAGTCAGTAAGATTTCAATACATCAAATGTGACGGTTTCCCAATGCGGAACGGTAAAATATACACATTTCCATACAGATTTCAATACATCAAATGTGACGGTTTCCCTCAAACCAATCGTAAAACCATTTATAATCATTAGGTAATTTCAATACATCAAATGTGACGGTTTCCCTTAATTTTAAAATTGGTAATTTAAGCATTACTTTCAAATTTCAATACATCAAATGTGACGGTTTCCCAGTACCCCTTATCGTAACTTTGTAACAATAAAGCTTAATTTCAATACATCAAATGTGACGGTTTCCCTGCCATATAAATGTTCATTTCCTCCGGAACTACATTTATTTCAATACATCAAATGTGACGGTTTCCCAGAACACGGAAACGAGTTTTGAGGGAGGGGTTAAAAATTTCAATACATCAAATGTGACGGTTTCCCGGCGTTATATAATGCCTGCTCCATGCGCTTATGGCATTTCAATACATCAAATGTGACGGTTTCCCAAACTTAAGGCTAAAGATGGATTGAAAGCGGAACTATTTCAATACATCAAATGTGACGGTTTCCCTATTCTGACTGGCACACCACTATCACAGGGGGTAGTATTTCAATACATCAAATGTGACGGTTTCCCTTTCACCTTTACATATCTTTGAAATATAAGAATGATATTTCAATACATCAAATGTGACGGTTTCCCTTTTTGGTATCTTAAAGGTAACTTCGCTGTACCTGAATTTCAATACATCAAATGTGACGGTTTCCCCTGCTATTCAATCGGGGTAGTTGCAGGGGAAATTGAATTTCAATACATCAAATGTGACGGTTTCCCTATCCTGCTTGGCTGCTGATATATTCACCTTTTGGAATTTCAATACATCAAATGTGACGGTTTCCCCATCTAAATTGCTCATTTCCTTAACGACCCACCACTATTTCAATACATCAAATGTGACGGTTTCCCGACTTAAGAGGATTTTTAATGTATCTTGGGAAGCCAATTTCAATACATCAAATGTGACGGTTTCCCGCCCTGATTGTGGCGGTGGGCCTGGATATTTAGAGGGATTTCAATACATCAAATGTGACGGTTTCCCTGTTGCCAGGCAGCAGTGCAGGCAGCTAGTCCTGAAATTTCAATACATCAAATGTGACGGTTTCCCTCAGCAGCAGTCCAGAAAAGTATCTGGTAATACTCAATTTCAATACATCAAATGTGACGGTTTCCCCGACATACAGAAAAGGTTTGTGGGATTGGTATACTTATTTCAATACATCAAATGTGACGGTTTCCCTATACCATTTTGAGGAGGAGATACGATGCCTTTATTATTTCAATACATCAAATGTGACGGTTTCCCGGGGTTGCAGGAAATCAGGGTTTCCAGCCTAATACAATTTCAATACATCAAATGTGACGGTTTCCCAGCAGGGAGGTAATTATAACAGCAAATCTAATTGGATTTCAATACATCAAATGTGACGGTTTCCCCATCGTCGGTAATGCGGTTATCCTCACCAATTTCCAATTTCAATACATCAAATGTGACGGTTTCCCCTCTCCCCGGCCGGTTACTTACTGTATATAGAAAAACATTTCAATACATCAAATGTGACGGTTTCCCTTCAAAATAGACCGTATCATGGATTACCGAAGGAATATTTCAATACATCAAATGTGACGGTTTCCCGTAGTCGTACATCATGTTTATGTTGCAGTAAGCTTTATTTCAATACATCAAATGTGACGGTTTCCCTGTGCAGGGGCCTTTTTTAAATTCCATGACAGCGGGAATTTCAATACATCAAATGTGACGGTTTCCCCTTAAAGATATGGAATACAGAATTGAATATCAAACATTTCAATACATCAAATGTGACGGTTTCCCGAAATATCCACTTGATTTGTTATCTGAAGCTATTGAATTTCAATACATCAAATGTGACGGTTTCCCTTCACCGTCATCTTTGCGCGTGTCTTTCCAGCCGATATTTCAATACATCAAATGTGACGGTTTCCCTGATACCGACATGGTCGTTAGAAACTTGCTCCATCTATTTCAATACATCAAATGTGACGGTTTCCCTTCCGAGAATATTTTGCAGATACAGGCTGCCGGTGAATTTCAATACATCAAATGTGACGGTTTCCCCCGAGAAGGTGCCTGCTGCATGGTGAGGTGGGCAGCAATTTCAATACATCAAATGTGACGGTTTCCCGGGGCAGGGGCAACCTTATTCCCAGACGATCAGCTGATTTCAATACATCAAATGTGACGGTTTCCCGGTGTCGGATAAAGAATACTACGAAAAACGCAGAATATTTCAATACATCAAATGTGACGGTTTCCCGGGTGACGGAGAAGCCGGAACAGCAATGATTAACGGATTTCAATACATCAAATGTGACGGTTTCCCGGACTTGCCCCCGGTTACAGTAAAACTGCCGGACGGATTTCAATACATCAAATGTGACGGTTTCCCCTGAATTAATTGAGGCACTATACAATGCTTTTGTGTATTTCAATACATCAAATGTGACGGTTTCCCACTACCGCCGCAAGTGGCATAACGGTGCCCAACCTAAATTTCAATACATCAAATGTGACGGTTTCCCGAAACGTGAAATAACTGGTCTAATTGAGGTAAAGCCATTTCAATACATCAAATGTGACGGTTTCCCGAGCTATCACGAGATAGTATACAAGCTTCGTATGGGATTTCAATACATCAAATGTGACGGTTTCCCCTCTAAAGTCAACACTTGAAGAAATGGCTTCAATTGTATTTCAATACATCAAATGTGACGGTTTCCCGGATACATATCTCCAGCCTCTTGCCAAATAGAATCCCATTTCAATACATCAAATGTGACGGTTTCCCGACCATCAAAGCATCCAGATCCTCCAATATTAAATAAATTTCAATACATCAAATGTGACGGTTTCCCCAAATAGAAAAATATTCCCTTAGCAATGGGGATTGTAATTTCAATACATCAAATGTGACGGTTTCCCACGAAACAATGGATTTAACTGGTGCAACTAATACGTATTTCAATACATCAAATGTGACGGTTTCCCGGTTATTTTCCCACTGCAGACGGAAGCTGATCTGCTATTTCAATACATCAAATGTGACGGTTTCCCTAAAACACTCTGATGGGTAAATATAATCAAAAATAATTTCAATACATCAAATGTGACGGTTTCCCGAAATATTGGTCAGCGGTACGCTAACATGAACATTATTTCAATACATCAAATGTGACGGTTTCCCAAGGTGAAATTCAAGTCCTGGCTAATAACAATGCCGCATTTCAATACATCAAATGTGACGGTTTCCCGGGACTGTTTGTAGCGCATTTCGCCACTATATATCTATTTCAATACATCAAATGTGACGGTTTCCCCAAAACAGCTTTTTTAGCTAATTTTATATCTCCAATATTTCAATACATCAAATGTGACGGTTTCCCTCACCATTTCGATACATTGTCCAAGCGCCCAAACCTATTTCAATACATCAAATGTGACGGTTTCCCGTGTTTGCAATACCGGTTAAAGCAACAACACAGGTATTTCAATACATCAAATGTGACGGTTTCCCTCAGCCATTTATGGTTGCCCAATCTAAGTCAAGAATATTTCAATACATCAAATGTGACGGTTTCCCAAGGATATTATGCTTAATACAACCGTTTATTTAGAATTTCAATACATCAAATGTGACGGTTTCCCAAAACATAATGTACAAACAAGATTAACAGAAATGAATTTCAATACATCAAATGTGACGGTTTCCCTTATATTCGACGTTCAGTATTTAAATTCCTTCTTTTTATTTCAATACATCAAATGTGACGGTTTCCCACAATTATAAAGCACATTTGGGGAACAGATAAAAAATTTCAATACATCAAATGTGACGGTTTCCCGGAGAAAAGAATGGAGAAAAGAAAAAATATAGCAAATTTCAATACATCAAATGTGACGGTTTCCCGAATTTAATACATATTTAATAGGAGGCTCACAATAAATTTCAATACATCAAATGTGACGGTTTCCCGAGGAAGAAGAAAAAAGGATACTGAGACAGTTAGCAAATTTCAATACATCAAATGTGACGGTTTCCC

>NC_013216|8|9|3189932-3199658|PILER-CR
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTCCTTGGGCGGTGGGTTGTGACTACGATAGTTAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA
ATTTCAATACATCAAATGTGATGGTTTCCC	GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA
ATTTCAATACATCAAATGTGATGGTTTCCC	CAGTGTACTTGAATGGCCTGCACCAAAGTTTGAGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGGACAACCGGCCATGCCGGAGATATAAACAGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGGTGCTGCTAGGAGTTCCATAATTACAATGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	ATTACTGTTAATTTTGAAGGCGATTTAGTTTTCTTC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTACAAGCCAGCGCTGGTAGTCTAAACTATCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GCCGGAAACTTGTCGGCAAAATTACGGCGTAAATC
ATTTCAATACATCAAATGTGACGGTTTCCC	CCTTTAAAGCCTTGTGGTGCCTGTGTAGTTTTTCGA
ATTTCAATACATCAAATGTGACGGTTTCCC	ACGGACAGAATGTGCGAAGGGAGGTGAAAAAAGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGATAATCGCAAAGTATGCGGTGATGCCAGTTAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAACCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTTTACATCAATTATAACATTAATGAAGTTAATT
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGTCCGGTGTTAAGGAACAAATTTATTTTGTTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGATTATGAGGTGATAATATGCTTTCTATCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	ATGGCCAGGACCTCCGGAGCCGAACCGGAAAGAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	ACCAAGCACCATTGTAACAAACACAATAAGTGCCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAACAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAAAATATTTCGTTGGTGATTGTATTATGTTCGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTATTAAGCTTGTCTTGCTCACGCTTAATATCGG
ATTTCAATACATCAAATGTGACGGTTTCCC	TCGCATTTCCCACACATCAAAATATCCTCAGGACGT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCCTCATGTGCAATAGATTTCTAGAAAATTATATCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGTGGGTTTTTTCGCTGAATAGCCATGGCATA
ATTTCAATACATCAAATGTGACGGTTTCCC	CGTTCCTGTTTTCGCAACATATCAGACAAATTCTCT
ATTTCAATACATCAAATGTGACGGTTTCCC	CTATAAACCTGGCACTAGGATAATCAAAACCAAAGAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GTCAGTCCCTGGGTATTGTCCTAACCGGTTCCTTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	AATAAAGAAAGGCGTAGCTTCGAAGGTAGCTAGTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTACTTCGGTATACTGGCATACTAAAAGTATACCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTAGCACTCATAGCTATTTTAATTCCTGTTGGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	AATTTAGGAACAACTAAACCTAAATTATAAAACCTG
ATTTCAATACATCAAATTTGACGGTTTCCC	ACGTATATGGATGGTGGCAAAAGCGGAAAAAAAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACAGAGGGCAGAGGTTACTGTTTGGGAGGTAAGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAGGGGGGGTTATAAGTGTTAGCTTTAATTAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTCCGGAGTTCGTTTATTAGGTGTCTTATCAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCCTAAGCCTTATATTTAAAGGATTTTCAAGTCAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGCTTGTTGGCCAAACTGCACAGGATGTTATTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCCTTCAAATTCGGATTACAGGCAATATAATACAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	ATAGAAGGTGAACAAATACCTTTAGATTGGTATTC
ATTTCAATACATCAAATGTGACGGTTTCCC	CAACCTGGGCAGCAGCCTTGGCATCATGCTGATAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGCGCCTGTTAATGAAGCTCAGGCGATTGTTCCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TACCCTTCCTCATGCCAGCGTTCATAACGTGAAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTTTTTCATCCAACTGTTATGATGGTCAGTATTTCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAAACAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TGCTGGCGCAAAATAATACCCGGGAAGGTGATTTCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATTAAAGCATATGTGGAGGCAGAGCTTAGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACCAATTGACCAACGCAAAAAAATCAGAACTGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTGGATCTTTAAATATAACTACAGATGCTAATGAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGGGACTTCATGTTACTAACCGACTGGAACCGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAAAACAAAGGATGGTAAGTACCATCCTTAAGAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACGCCAAAATTATCATATATTGGACAATCATTAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TACCATTTTAAAATTAACTATGTAAACTTTTCATTC
ATTTCAATACATCAAATGTGACGGTTTCCC	ATTCGTAATATAAATAAATATGAGTGCTATTGTGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	ATAAGAATTTTCTCCTGTTCATCTGTCGGCAGAGCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTAACAGCCTCAGACACTGTAATATTTAATGATTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAACCTATTAACCAACTGGATAATATCTGTAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GTACTTCTTAAACACCATATTACTACACACAAAGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAGGGTTAGCAAGCAAATACAGGTATCATTATACC
ATTTCAATACATCAAATGTGACGGTTTCCC	CTTTTAACTTTTACCTTTTTTACAATCTCTAACCAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TATCCAGCATTCTTCATCTTGATCGTATTCAACTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATCCAGCATTCTTCATCTTGATCGTATTCAACTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTCTTTTCAAGCAAAAACTTTGCAGCCTCCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACAGAATGAAAGATTTTAGACTAAATATGGGTAAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTAATTAATACCCAAATATAAGGAGGTCATACAA
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAAAAGAAAGCTCCCGGTTATGGAATTATACCTAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAGTTGAAATTGGTAACATGAGTAACATTAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGTATCGCGGGTCAAGATTACCGGAAGGTGCTAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATTGTATTTATGCTTAATAACCGTACCCATAAAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGATATTGAAACAATGCTTAAAAAGACATTATGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTAGAAATGTTCAAGAATTTTGCCGCAAGATTATGAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATATATTTGATTGCTAATACTGGTATTAGAAGAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GATAATGAATAGAATATAATTATAATTGTTCACAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TAATATTTTCATTAGATTCCTTCTTATTGATTGTT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAATCTGGAGAATTAATTAACGTAATGTATCAAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGCATGGCGCGGATGCCTGGGGTTGGAACCAACGC
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGGGAAGCTTATATAATAAGTGTGTTTGGGTTGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAGTGCTGATATAAGTATTAGCCGCTACTTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	CCGGAAGAAACGCATTTTTTAAGGTATTTGAGGCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCATAAGCCGGTGTAGTTAAAAAAGGAGGTGTTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGATGTCAGAAATGATTTTGAGCAACACATTAACCG
ATTTCAATACATCAAATGTGACGGTTTCCC	ATATTTCGTTAACGAACCCGTGCTAGCTAGAATAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TACTCAGGCGGTGATGAACCGTTTAAATGCTATGGC
ATTTCAATACATCAAATGTGACGGTTTCCC	CCTACCATATAGCAAAACAGAAGCTTACATTGACAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGTTAGCGCATTCAGTACATAAGACAAAAATGCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTACGATTCGGAGGCTATTAAAGAGCAGTCAGTAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	AATGCGGAACGGTAAAATATACACATTTCCATACAG
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAAACCAATCGTAAAACCATTTATAATCATTAGGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTAATTTTAAAATTGGTAATTTAAGCATTACTTTCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	AGTACCCCTTATCGTAACTTTGTAACAATAAAGCTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TGCCATATAAATGTTCATTTCCTCCGGAACTACATTT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAACACGGAAACGAGTTTTGAGGGAGGGGTTAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGCGTTATATAATGCCTGCTCCATGCGCTTATGGC
ATTTCAATACATCAAATGTGACGGTTTCCC	AAACTTAAGGCTAAAGATGGATTGAAAGCGGAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	TATTCTGACTGGCACACCACTATCACAGGGGGTAGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTCACCTTTACATATCTTTGAAATATAAGAATGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTGGTATCTTAAAGGTAACTTCGCTGTACCTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGCTATTCAATCGGGGTAGTTGCAGGGGAAATTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TATCCTGCTTGGCTGCTGATATATTCACCTTTTGGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CATCTAAATTGCTCATTTCCTTAACGACCCACCACT
ATTTCAATACATCAAATGTGACGGTTTCCC	GACTTAAGAGGATTTTTAATGTATCTTGGGAAGCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GCCCTGATTGTGGCGGTGGGCCTGGATATTTAGAGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTTGCCAGGCAGCAGTGCAGGCAGCTAGTCCTGAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGCAGCAGTCCAGAAAAGTATCTGGTAATACTCA
ATTTCAATACATCAAATGTGACGGTTTCCC	CGACATACAGAAAAGGTTTGTGGGATTGGTATACTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TATACCATTTTGAGGAGGAGATACGATGCCTTTATT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGGTTGCAGGAAATCAGGGTTTCCAGCCTAATACA
ATTTCAATACATCAAATGTGACGGTTTCCC	AGCAGGGAGGTAATTATAACAGCAAATCTAATTGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CATCGTCGGTAATGCGGTTATCCTCACCAATTTCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTCTCCCCGGCCGGTTACTTACTGTATATAGAAAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCAAAATAGACCGTATCATGGATTACCGAAGGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTAGTCGTACATCATGTTTATGTTGCAGTAAGCTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTGCAGGGGCCTTTTTTAAATTCCATGACAGCGGGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTTAAAGATATGGAATACAGAATTGAATATCAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATATCCACTTGATTTGTTATCTGAAGCTATTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCACCGTCATCTTTGCGCGTGTCTTTCCAGCCGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TGATACCGACATGGTCGTTAGAAACTTGCTCCATCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCCGAGAATATTTTGCAGATACAGGCTGCCGGTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CCGAGAAGGTGCCTGCTGCATGGTGAGGTGGGCAGCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGGCAGGGGCAACCTTATTCCCAGACGATCAGCTG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGTGTCGGATAAAGAATACTACGAAAAACGCAGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGTGACGGAGAAGCCGGAACAGCAATGATTAACGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGACTTGCCCCCGGTTACAGTAAAACTGCCGGACGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGAATTAATTGAGGCACTATACAATGCTTTTGTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACTACCGCCGCAAGTGGCATAACGGTGCCCAACCTAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAACGTGAAATAACTGGTCTAATTGAGGTAAAGCC
ATTTCAATACATCAAATGTGACGGTTTCCC	GAGCTATCACGAGATAGTATACAAGCTTCGTATGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTCTAAAGTCAACACTTGAAGAAATGGCTTCAATTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGATACATATCTCCAGCCTCTTGCCAAATAGAATCCC
ATTTCAATACATCAAATGTGACGGTTTCCC	GACCATCAAAGCATCCAGATCCTCCAATATTAAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAAATAGAAAAATATTCCCTTAGCAATGGGGATTGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	ACGAAACAATGGATTTAACTGGTGCAACTAATACGT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGTTATTTTCCCACTGCAGACGGAAGCTGATCTGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TAAAACACTCTGATGGGTAAATATAATCAAAAATA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATATTGGTCAGCGGTACGCTAACATGAACATT
ATTTCAATACATCAAATGTGACGGTTTCCC	AAGGTGAAATTCAAGTCCTGGCTAATAACAATGCCGC
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGACTGTTTGTAGCGCATTTCGCCACTATATATCT
ATTTCAATACATCAAATGTGACGGTTTCCC	CAAAACAGCTTTTTTAGCTAATTTTATATCTCCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACCATTTCGATACATTGTCCAAGCGCCCAAACCT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTGTTTGCAATACCGGTTAAAGCAACAACACAGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGCCATTTATGGTTGCCCAATCTAAGTCAAGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	AAGGATATTATGCTTAATACAACCGTTTATTTAGA
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAACATAATGTACAAACAAGATTAACAGAAATGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATATTCGACGTTCAGTATTTAAATTCCTTCTTTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACAATTATAAAGCACATTTGGGGAACAGATAAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGAGAAAAGAATGGAGAAAAGAAAAAATATAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAATTTAATACATATTTAATAGGAGGCTCACAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAGGAAGAAGAAAAAAGGATACTGAGACAGTTAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC

>NC_013216|8|8|3189932-3199658|CRISPRCasFinder
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTCCTTGGGCGGTGGGTTGTGACTACGATAGTTAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA
ATTTCAATACATCAAATGTGATGGTTTCCC	GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA
ATTTCAATACATCAAATGTGATGGTTTCCC	CAGTGTACTTGAATGGCCTGCACCAAAGTTTGAGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGGACAACCGGCCATGCCGGAGATATAAACAGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGGTGCTGCTAGGAGTTCCATAATTACAATGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	ATTACTGTTAATTTTGAAGGCGATTTAGTTTTCTTC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTACAAGCCAGCGCTGGTAGTCTAAACTATCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GCCGGAAACTTGTCGGCAAAATTACGGCGTAAATC
ATTTCAATACATCAAATGTGACGGTTTCCC	CCTTTAAAGCCTTGTGGTGCCTGTGTAGTTTTTCGA
ATTTCAATACATCAAATGTGACGGTTTCCC	ACGGACAGAATGTGCGAAGGGAGGTGAAAAAAGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGATAATCGCAAAGTATGCGGTGATGCCAGTTAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAACCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTTTACATCAATTATAACATTAATGAAGTTAATT
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGTCCGGTGTTAAGGAACAAATTTATTTTGTTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGATTATGAGGTGATAATATGCTTTCTATCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	ATGGCCAGGACCTCCGGAGCCGAACCGGAAAGAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	ACCAAGCACCATTGTAACAAACACAATAAGTGCCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAACAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAAAATATTTCGTTGGTGATTGTATTATGTTCGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTATTAAGCTTGTCTTGCTCACGCTTAATATCGG
ATTTCAATACATCAAATGTGACGGTTTCCC	TCGCATTTCCCACACATCAAAATATCCTCAGGACGT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCCTCATGTGCAATAGATTTCTAGAAAATTATATCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGTGGGTTTTTTCGCTGAATAGCCATGGCATA
ATTTCAATACATCAAATGTGACGGTTTCCC	CGTTCCTGTTTTCGCAACATATCAGACAAATTCTCT
ATTTCAATACATCAAATGTGACGGTTTCCC	CTATAAACCTGGCACTAGGATAATCAAAACCAAAGAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GTCAGTCCCTGGGTATTGTCCTAACCGGTTCCTTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	AATAAAGAAAGGCGTAGCTTCGAAGGTAGCTAGTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTACTTCGGTATACTGGCATACTAAAAGTATACCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTAGCACTCATAGCTATTTTAATTCCTGTTGGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	AATTTAGGAACAACTAAACCTAAATTATAAAACCTG
ATTTCAATACATCAAATTTGACGGTTTCCC	ACGTATATGGATGGTGGCAAAAGCGGAAAAAAAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACAGAGGGCAGAGGTTACTGTTTGGGAGGTAAGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAGGGGGGGTTATAAGTGTTAGCTTTAATTAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTCCGGAGTTCGTTTATTAGGTGTCTTATCAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCCTAAGCCTTATATTTAAAGGATTTTCAAGTCAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGCTTGTTGGCCAAACTGCACAGGATGTTATTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCCTTCAAATTCGGATTACAGGCAATATAATACAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	ATAGAAGGTGAACAAATACCTTTAGATTGGTATTC
ATTTCAATACATCAAATGTGACGGTTTCCC	CAACCTGGGCAGCAGCCTTGGCATCATGCTGATAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGCGCCTGTTAATGAAGCTCAGGCGATTGTTCCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TACCCTTCCTCATGCCAGCGTTCATAACGTGAAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTTTTTCATCCAACTGTTATGATGGTCAGTATTTCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAAACAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TGCTGGCGCAAAATAATACCCGGGAAGGTGATTTCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATTAAAGCATATGTGGAGGCAGAGCTTAGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACCAATTGACCAACGCAAAAAAATCAGAACTGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTGGATCTTTAAATATAACTACAGATGCTAATGAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGGGACTTCATGTTACTAACCGACTGGAACCGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAAAACAAAGGATGGTAAGTACCATCCTTAAGAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACGCCAAAATTATCATATATTGGACAATCATTAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TACCATTTTAAAATTAACTATGTAAACTTTTCATTC
ATTTCAATACATCAAATGTGACGGTTTCCC	ATTCGTAATATAAATAAATATGAGTGCTATTGTGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	ATAAGAATTTTCTCCTGTTCATCTGTCGGCAGAGCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTAACAGCCTCAGACACTGTAATATTTAATGATTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAACCTATTAACCAACTGGATAATATCTGTAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GTACTTCTTAAACACCATATTACTACACACAAAGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAGGGTTAGCAAGCAAATACAGGTATCATTATACC
ATTTCAATACATCAAATGTGACGGTTTCCC	CTTTTAACTTTTACCTTTTTTACAATCTCTAACCAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TATCCAGCATTCTTCATCTTGATCGTATTCAACTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATCCAGCATTCTTCATCTTGATCGTATTCAACTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTCTTTTCAAGCAAAAACTTTGCAGCCTCCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACAGAATGAAAGATTTTAGACTAAATATGGGTAAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTAATTAATACCCAAATATAAGGAGGTCATACAA
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAAAAGAAAGCTCCCGGTTATGGAATTATACCTAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAGTTGAAATTGGTAACATGAGTAACATTAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGTATCGCGGGTCAAGATTACCGGAAGGTGCTAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATTGTATTTATGCTTAATAACCGTACCCATAAAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGATATTGAAACAATGCTTAAAAAGACATTATGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTAGAAATGTTCAAGAATTTTGCCGCAAGATTATGAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATATATTTGATTGCTAATACTGGTATTAGAAGAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GATAATGAATAGAATATAATTATAATTGTTCACAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TAATATTTTCATTAGATTCCTTCTTATTGATTGTT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAATCTGGAGAATTAATTAACGTAATGTATCAAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGCATGGCGCGGATGCCTGGGGTTGGAACCAACGC
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGGGAAGCTTATATAATAAGTGTGTTTGGGTTGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAGTGCTGATATAAGTATTAGCCGCTACTTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	CCGGAAGAAACGCATTTTTTAAGGTATTTGAGGCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCATAAGCCGGTGTAGTTAAAAAAGGAGGTGTTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGATGTCAGAAATGATTTTGAGCAACACATTAACCG
ATTTCAATACATCAAATGTGACGGTTTCCC	ATATTTCGTTAACGAACCCGTGCTAGCTAGAATAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TACTCAGGCGGTGATGAACCGTTTAAATGCTATGGC
ATTTCAATACATCAAATGTGACGGTTTCCC	CCTACCATATAGCAAAACAGAAGCTTACATTGACAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGTTAGCGCATTCAGTACATAAGACAAAAATGCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTACGATTCGGAGGCTATTAAAGAGCAGTCAGTAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	AATGCGGAACGGTAAAATATACACATTTCCATACAG
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAAACCAATCGTAAAACCATTTATAATCATTAGGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTAATTTTAAAATTGGTAATTTAAGCATTACTTTCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	AGTACCCCTTATCGTAACTTTGTAACAATAAAGCTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TGCCATATAAATGTTCATTTCCTCCGGAACTACATTT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAACACGGAAACGAGTTTTGAGGGAGGGGTTAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGCGTTATATAATGCCTGCTCCATGCGCTTATGGC
ATTTCAATACATCAAATGTGACGGTTTCCC	AAACTTAAGGCTAAAGATGGATTGAAAGCGGAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	TATTCTGACTGGCACACCACTATCACAGGGGGTAGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTCACCTTTACATATCTTTGAAATATAAGAATGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTGGTATCTTAAAGGTAACTTCGCTGTACCTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGCTATTCAATCGGGGTAGTTGCAGGGGAAATTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TATCCTGCTTGGCTGCTGATATATTCACCTTTTGGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CATCTAAATTGCTCATTTCCTTAACGACCCACCACT
ATTTCAATACATCAAATGTGACGGTTTCCC	GACTTAAGAGGATTTTTAATGTATCTTGGGAAGCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GCCCTGATTGTGGCGGTGGGCCTGGATATTTAGAGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTTGCCAGGCAGCAGTGCAGGCAGCTAGTCCTGAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGCAGCAGTCCAGAAAAGTATCTGGTAATACTCA
ATTTCAATACATCAAATGTGACGGTTTCCC	CGACATACAGAAAAGGTTTGTGGGATTGGTATACTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TATACCATTTTGAGGAGGAGATACGATGCCTTTATT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGGTTGCAGGAAATCAGGGTTTCCAGCCTAATACA
ATTTCAATACATCAAATGTGACGGTTTCCC	AGCAGGGAGGTAATTATAACAGCAAATCTAATTGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CATCGTCGGTAATGCGGTTATCCTCACCAATTTCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTCTCCCCGGCCGGTTACTTACTGTATATAGAAAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCAAAATAGACCGTATCATGGATTACCGAAGGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTAGTCGTACATCATGTTTATGTTGCAGTAAGCTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTGCAGGGGCCTTTTTTAAATTCCATGACAGCGGGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTTAAAGATATGGAATACAGAATTGAATATCAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATATCCACTTGATTTGTTATCTGAAGCTATTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCACCGTCATCTTTGCGCGTGTCTTTCCAGCCGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TGATACCGACATGGTCGTTAGAAACTTGCTCCATCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCCGAGAATATTTTGCAGATACAGGCTGCCGGTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CCGAGAAGGTGCCTGCTGCATGGTGAGGTGGGCAGCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGGCAGGGGCAACCTTATTCCCAGACGATCAGCTG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGTGTCGGATAAAGAATACTACGAAAAACGCAGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGTGACGGAGAAGCCGGAACAGCAATGATTAACGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGACTTGCCCCCGGTTACAGTAAAACTGCCGGACGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGAATTAATTGAGGCACTATACAATGCTTTTGTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACTACCGCCGCAAGTGGCATAACGGTGCCCAACCTAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAACGTGAAATAACTGGTCTAATTGAGGTAAAGCC
ATTTCAATACATCAAATGTGACGGTTTCCC	GAGCTATCACGAGATAGTATACAAGCTTCGTATGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTCTAAAGTCAACACTTGAAGAAATGGCTTCAATTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGATACATATCTCCAGCCTCTTGCCAAATAGAATCCC
ATTTCAATACATCAAATGTGACGGTTTCCC	GACCATCAAAGCATCCAGATCCTCCAATATTAAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAAATAGAAAAATATTCCCTTAGCAATGGGGATTGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	ACGAAACAATGGATTTAACTGGTGCAACTAATACGT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGTTATTTTCCCACTGCAGACGGAAGCTGATCTGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TAAAACACTCTGATGGGTAAATATAATCAAAAATA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATATTGGTCAGCGGTACGCTAACATGAACATT
ATTTCAATACATCAAATGTGACGGTTTCCC	AAGGTGAAATTCAAGTCCTGGCTAATAACAATGCCGC
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGACTGTTTGTAGCGCATTTCGCCACTATATATCT
ATTTCAATACATCAAATGTGACGGTTTCCC	CAAAACAGCTTTTTTAGCTAATTTTATATCTCCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACCATTTCGATACATTGTCCAAGCGCCCAAACCT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTGTTTGCAATACCGGTTAAAGCAACAACACAGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGCCATTTATGGTTGCCCAATCTAAGTCAAGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	AAGGATATTATGCTTAATACAACCGTTTATTTAGA
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAACATAATGTACAAACAAGATTAACAGAAATGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATATTCGACGTTCAGTATTTAAATTCCTTCTTTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACAATTATAAAGCACATTTGGGGAACAGATAAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGAGAAAAGAATGGAGAAAAGAAAAAATATAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAATTTAATACATATTTAATAGGAGGCTCACAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAGGAAGAAGAAAAAAGGATACTGAGACAGTTAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC

>NC_013216|8|7|3189932-3199658|CRT
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTCCTTGGGCGGTGGGTTGTGACTACGATAGTTAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA
ATTTCAATACATCAAATGTGATGGTTTCCC	GAAACGAAAAGCGGAAATGAAAAAGTTCTCGAAAAAA
ATTTCAATACATCAAATGTGATGGTTTCCC	CAGTGTACTTGAATGGCCTGCACCAAAGTTTGAGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGGACAACCGGCCATGCCGGAGATATAAACAGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGGTGCTGCTAGGAGTTCCATAATTACAATGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	ATTACTGTTAATTTTGAAGGCGATTTAGTTTTCTTC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTACAAGCCAGCGCTGGTAGTCTAAACTATCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GCCGGAAACTTGTCGGCAAAATTACGGCGTAAATC
ATTTCAATACATCAAATGTGACGGTTTCCC	CCTTTAAAGCCTTGTGGTGCCTGTGTAGTTTTTCGA
ATTTCAATACATCAAATGTGACGGTTTCCC	ACGGACAGAATGTGCGAAGGGAGGTGAAAAAAGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGATAATCGCAAAGTATGCGGTGATGCCAGTTAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAACCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTTTACATCAATTATAACATTAATGAAGTTAATT
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGTCCGGTGTTAAGGAACAAATTTATTTTGTTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGATTATGAGGTGATAATATGCTTTCTATCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	ATGGCCAGGACCTCCGGAGCCGAACCGGAAAGAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	ACCAAGCACCATTGTAACAAACACAATAAGTGCCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAACAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAAAATATTTCGTTGGTGATTGTATTATGTTCGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTATTAAGCTTGTCTTGCTCACGCTTAATATCGG
ATTTCAATACATCAAATGTGACGGTTTCCC	TCGCATTTCCCACACATCAAAATATCCTCAGGACGT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCCTCATGTGCAATAGATTTCTAGAAAATTATATCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTGTGGGTTTTTTCGCTGAATAGCCATGGCATA
ATTTCAATACATCAAATGTGACGGTTTCCC	CGTTCCTGTTTTCGCAACATATCAGACAAATTCTCT
ATTTCAATACATCAAATGTGACGGTTTCCC	CTATAAACCTGGCACTAGGATAATCAAAACCAAAGAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GTCAGTCCCTGGGTATTGTCCTAACCGGTTCCTTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	AATAAAGAAAGGCGTAGCTTCGAAGGTAGCTAGTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTACTTCGGTATACTGGCATACTAAAAGTATACCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTAGCACTCATAGCTATTTTAATTCCTGTTGGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	AATTTAGGAACAACTAAACCTAAATTATAAAACCTG
ATTTCAATACATCAAATTTGACGGTTTCCC	ACGTATATGGATGGTGGCAAAAGCGGAAAAAAAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACAGAGGGCAGAGGTTACTGTTTGGGAGGTAAGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAGGGGGGGTTATAAGTGTTAGCTTTAATTAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTCCGGAGTTCGTTTATTAGGTGTCTTATCAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCCTAAGCCTTATATTTAAAGGATTTTCAAGTCAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGCTTGTTGGCCAAACTGCACAGGATGTTATTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCCTTCAAATTCGGATTACAGGCAATATAATACAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	ATAGAAGGTGAACAAATACCTTTAGATTGGTATTC
ATTTCAATACATCAAATGTGACGGTTTCCC	CAACCTGGGCAGCAGCCTTGGCATCATGCTGATAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGCGCCTGTTAATGAAGCTCAGGCGATTGTTCCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TACCCTTCCTCATGCCAGCGTTCATAACGTGAAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTTTTTCATCCAACTGTTATGATGGTCAGTATTTCTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACTGACCTACAACCTTCTGTAACCCACCAAACAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TGCTGGCGCAAAATAATACCCGGGAAGGTG
ATTTCAATTTCAATACATCAAATGTGACGG	TTTCCCGAAATTAAAGCATATGTGGAGGCAGAGCTTAGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACCAATTGACCAACGCAAAAAAATCAGAACTGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTGGATCTTTAAATATAACTACAGATGCTAATGAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGGGACTTCATGTTACTAACCGACTGGAACCGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAAAACAAAGGATGGTAAGTACCATCCTTAAGAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	AACGCCAAAATTATCATATATTGGACAATCATTAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TACCATTTTAAAATTAACTATGTAAACTTTTCATTC
ATTTCAATACATCAAATGTGACGGTTTCCC	ATTCGTAATATAAATAAATATGAGTGCTATTGTGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	ATAAGAATTTTCTCCTGTTCATCTGTCGGCAGAGCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTAACAGCCTCAGACACTGTAATATTTAATGATTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAACCTATTAACCAACTGGATAATATCTGTAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GTACTTCTTAAACACCATATTACTACACACAAAGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAGGGTTAGCAAGCAAATACAGGTATCATTATACC
ATTTCAATACATCAAATGTGACGGTTTCCC	CTTTTAACTTTTACCTTTTTTACAATCTCTAACCAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TATCCAGCATTCTTCATCTTGATCGTATTCAACTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATCCAGCATTCTTCATCTTGATCGTATTCAACTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTCTTTTCAAGCAAAAACTTTGCAGCCTCCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACAGAATGAAAGATTTTAGACTAAATATGGGTAAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTAATTAATACCCAAATATAAGGAGGTCATACAA
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAAAAGAAAGCTCCCGGTTATGGAATTATACCTAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAGTTGAAATTGGTAACATGAGTAACATTAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGTATCGCGGGTCAAGATTACCGGAAGGTGCTAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATTGTATTTATGCTTAATAACCGTACCCATAAAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGATATTGAAACAATGCTTAAAAAGACATTATGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTAGAAATGTTCAAGAATTTTGCCGCAAGATTATGAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATATATTTGATTGCTAATACTGGTATTAGAAGAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GATAATGAATAGAATATAATTATAATTGTTCACAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TAATATTTTCATTAGATTCCTTCTTATTGATTGTT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAATCTGGAGAATTAATTAACGTAATGTATCAAGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGCATGGCGCGGATGCCTGGGGTTGGAACCAACGC
ATTTCAATACATCAAATGTGACGGTTTCCC	CAGGGAAGCTTATATAATAAGTGTGTTTGGGTTGTG
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGATAGTGCTGATATAAGTATTAGCCGCTACTTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	CCGGAAGAAACGCATTTTTTAAGGTATTTGAGGCAT
ATTTCAATACATCAAATGTGACGGTTTCCC	CCATAAGCCGGTGTAGTTAAAAAAGGAGGTGTTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGATGTCAGAAATGATTTTGAGCAACACATTAACCG
ATTTCAATACATCAAATGTGACGGTTTCCC	ATATTTCGTTAACGAACCCGTGCTAGCTAGAATAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TACTCAGGCGGTGATGAACCGTTTAAATGCTATGGC
ATTTCAATACATCAAATGTGACGGTTTCCC	CCTACCATATAGCAAAACAGAAGCTTACATTGACAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTGTTAGCGCATTCAGTACATAAGACAAAAATGCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTACGATTCGGAGGCTATTAAAGAGCAGTCAGTAAG
ATTTCAATACATCAAATGTGACGGTTTCCC	AATGCGGAACGGTAAAATATACACATTTCCATACAG
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAAACCAATCGTAAAACCATTTATAATCATTAGGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTAATTTTAAAATTGGTAATTTAAGCATTACTTTCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	AGTACCCCTTATCGTAACTTTGTAACAATAAAGCTTA
ATTTCAATACATCAAATGTGACGGTTTCCC	TGCCATATAAATGTTCATTTCCTCCGGAACTACATTT
ATTTCAATACATCAAATGTGACGGTTTCCC	AGAACACGGAAACGAGTTTTGAGGGAGGGGTTAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGCGTTATATAATGCCTGCTCCATGCGCTTATGGC
ATTTCAATACATCAAATGTGACGGTTTCCC	AAACTTAAGGCTAAAGATGGATTGAAAGCGGAACT
ATTTCAATACATCAAATGTGACGGTTTCCC	TATTCTGACTGGCACACCACTATCACAGGGGGTAGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTCACCTTTACATATCTTTGAAATATAAGAATGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTTTTGGTATCTTAAAGGTAACTTCGCTGTACCTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGCTATTCAATCGGGGTAGTTGCAGGGGAAATTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TATCCTGCTTGGCTGCTGATATATTCACCTTTTGGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CATCTAAATTGCTCATTTCCTTAACGACCCACCACT
ATTTCAATACATCAAATGTGACGGTTTCCC	GACTTAAGAGGATTTTTAATGTATCTTGGGAAGCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GCCCTGATTGTGGCGGTGGGCCTGGATATTTAGAGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTTGCCAGGCAGCAGTGCAGGCAGCTAGTCCTGAA
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGCAGCAGTCCAGAAAAGTATCTGGTAATACTCA
ATTTCAATACATCAAATGTGACGGTTTCCC	CGACATACAGAAAAGGTTTGTGGGATTGGTATACTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TATACCATTTTGAGGAGGAGATACGATGCCTTTATT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGGTTGCAGGAAATCAGGGTTTCCAGCCTAATACA
ATTTCAATACATCAAATGTGACGGTTTCCC	AGCAGGGAGGTAATTATAACAGCAAATCTAATTGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CATCGTCGGTAATGCGGTTATCCTCACCAATTTCCA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTCTCCCCGGCCGGTTACTTACTGTATATAGAAAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCAAAATAGACCGTATCATGGATTACCGAAGGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTAGTCGTACATCATGTTTATGTTGCAGTAAGCTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	TGTGCAGGGGCCTTTTTTAAATTCCATGACAGCGGGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CTTAAAGATATGGAATACAGAATTGAATATCAAAC
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATATCCACTTGATTTGTTATCTGAAGCTATTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCACCGTCATCTTTGCGCGTGTCTTTCCAGCCGAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TGATACCGACATGGTCGTTAGAAACTTGCTCCATCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TTCCGAGAATATTTTGCAGATACAGGCTGCCGGTGA
ATTTCAATACATCAAATGTGACGGTTTCCC	CCGAGAAGGTGCCTGCTGCATGGTGAGGTGGGCAGCA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGGCAGGGGCAACCTTATTCCCAGACGATCAGCTG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGTGTCGGATAAAGAATACTACGAAAAACGCAGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGTGACGGAGAAGCCGGAACAGCAATGATTAACGG
ATTTCAATACATCAAATGTGACGGTTTCCC	GGACTTGCCCCCGGTTACAGTAAAACTGCCGGACGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTGAATTAATTGAGGCACTATACAATGCTTTTGTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACTACCGCCGCAAGTGGCATAACGGTGCCCAACCTAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAACGTGAAATAACTGGTCTAATTGAGGTAAAGCC
ATTTCAATACATCAAATGTGACGGTTTCCC	GAGCTATCACGAGATAGTATACAAGCTTCGTATGGG
ATTTCAATACATCAAATGTGACGGTTTCCC	CTCTAAAGTCAACACTTGAAGAAATGGCTTCAATTGT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGATACATATCTCCAGCCTCTTGCCAAATAGAATCCC
ATTTCAATACATCAAATGTGACGGTTTCCC	GACCATCAAAGCATCCAGATCCTCCAATATTAAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	CAAATAGAAAAATATTCCCTTAGCAATGGGGATTGTA
ATTTCAATACATCAAATGTGACGGTTTCCC	ACGAAACAATGGATTTAACTGGTGCAACTAATACGT
ATTTCAATACATCAAATGTGACGGTTTCCC	GGTTATTTTCCCACTGCAGACGGAAGCTGATCTGCT
ATTTCAATACATCAAATGTGACGGTTTCCC	TAAAACACTCTGATGGGTAAATATAATCAAAAATA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAAATATTGGTCAGCGGTACGCTAACATGAACATT
ATTTCAATACATCAAATGTGACGGTTTCCC	AAGGTGAAATTCAAGTCCTGGCTAATAACAATGCCGC
ATTTCAATACATCAAATGTGACGGTTTCCC	GGGACTGTTTGTAGCGCATTTCGCCACTATATATCT
ATTTCAATACATCAAATGTGACGGTTTCCC	CAAAACAGCTTTTTTAGCTAATTTTATATCTCCAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCACCATTTCGATACATTGTCCAAGCGCCCAAACCT
ATTTCAATACATCAAATGTGACGGTTTCCC	GTGTTTGCAATACCGGTTAAAGCAACAACACAGGT
ATTTCAATACATCAAATGTGACGGTTTCCC	TCAGCCATTTATGGTTGCCCAATCTAAGTCAAGAAT
ATTTCAATACATCAAATGTGACGGTTTCCC	AAGGATATTATGCTTAATACAACCGTTTATTTAGA
ATTTCAATACATCAAATGTGACGGTTTCCC	AAAACATAATGTACAAACAAGATTAACAGAAATGA
ATTTCAATACATCAAATGTGACGGTTTCCC	TTATATTCGACGTTCAGTATTTAAATTCCTTCTTTTT
ATTTCAATACATCAAATGTGACGGTTTCCC	ACAATTATAAAGCACATTTGGGGAACAGATAAAAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GGAGAAAAGAATGGAGAAAAGAAAAAATATAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAATTTAATACATATTTAATAGGAGGCTCACAATAA
ATTTCAATACATCAAATGTGACGGTTTCCC	GAGGAAGAAGAAAAAAGGATACTGAGACAGTTAGCAA
ATTTCAATACATCAAATGTGACGGTTTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015758442.1\|3187618_3188284_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NC_013216.1\|WP_015758444.1\|3199832_3200117_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013216.1\|WP_015758450.1\|3205699_3207499_-\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NC_013216.1\|WP_015758435.1\|3179216_3180635_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_013216.1\|WP_042317297.1\|3208749_3210258_-\|response-regulator	unknown	unknown	gnl\|CDD\|236901
NC_013216.1\|WP_015758436.1\|3180641_3181979_-\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
NC_013216.1\|WP_015758434.1\|3177857_3179159_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NC_013216.1\|WP_015758447.1\|3201620_3204005_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NC_013216.1\|WP_015758441.1\|3186310_3187609_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320684
NC_013216.1\|WP_015758439.1\|3184414_3184990_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|376767
NC_013216.1\|WP_015758449.1\|3204780_3205713_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_013216.1\|WP_015758451.1\|3207503_3208202_-\|CRISPR-associated-protein-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_013216.1\|WP_083773539.1\|3201135_3201621_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_013216.1\|WP_015758453.1\|3210324_3211179_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_013216.1\|WP_015758448.1\|3204027_3204768_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_013216.1\|WP_042317295.1\|3182847_3184104_-\|TerD-family-protein	unknown	unknown	gnl\|CDD\|226595
NC_013216.1\|WP_015758440.1\|3185217_3186318_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|188457
NC_013216.1\|WP_015758437.1\|3182041_3182701_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238741
NC_013216.1\|WP_015758445.1\|3200113_3201121_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_013216.1\|WP_015758443.1\|3188743_3189298_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015758442.1\|3187618_3188284_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	7.65551e-41
NC_013216.1\|WP_015758444.1\|3199832_3200117_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.79352e-25
NC_013216.1\|WP_015758435.1\|3179216_3180635_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.89256e-07
NC_013216.1\|WP_042317297.1\|3208749_3210258_-\|response-regulator	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	7.32061e-56
NC_013216.1\|WP_015758436.1\|3180641_3181979_-\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	2.93395e-60
NC_013216.1\|WP_015758434.1\|3177857_3179159_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	4.33059e-65
NC_013216.1\|WP_015758447.1\|3201620_3204005_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.54784e-27
NC_013216.1\|WP_015758441.1\|3186310_3187609_-\|M48-family-metallopeptidase	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	1.04138e-75
NC_013216.1\|WP_015758439.1\|3184414_3184990_-\|TerD-family-protein	gnl\|CDD\|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	1.1431e-120
NC_013216.1\|WP_015758449.1\|3204780_3205713_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.84229e-35
NC_013216.1\|WP_015758451.1\|3207503_3208202_-\|CRISPR-associated-protein-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	6.26221e-10
NC_013216.1\|WP_083773539.1\|3201135_3201621_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.68439e-54
NC_013216.1\|WP_015758453.1\|3210324_3211179_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	1.65761e-69
NC_013216.1\|WP_015758448.1\|3204027_3204768_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	6.73789e-41
NC_013216.1\|WP_042317295.1\|3182847_3184104_-\|TerD-family-protein	gnl\|CDD\|226595	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only].	4.13123e-80
NC_013216.1\|WP_015758440.1\|3185217_3186318_-\|radical-SAM-protein	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	1.16388e-59
NC_013216.1\|WP_015758437.1\|3182041_3182701_-\|VWA-domain-containing-protein	gnl\|CDD\|238741	cd01464, vWA_subfamily, VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have no assigned function. This subfamily is typified by the presence of a conserved MIDAS motif.	8.01104e-71
NC_013216.1\|WP_015758445.1\|3200113_3201121_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.86281e-136
NC_013216.1\|WP_015758443.1\|3188743_3189298_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.90356e-34

>NC_013216.1|WP_015758443.1|3188743_3189298_-|flavodoxin-family-protein
MKKMVAFVGSPRKNANISTIVGEIVRGAKEAGAETKVYTLSDMNIKQCQGCFHCREVEMCAIKDDMQLVYEDIKEADAIVIGSPVYMHQVTALTKLLIERLFPLTDSNFKPRFGIKKTIMVYSQGNPDANSFKTSFDINANVLKVMGLDVMDTIISAGANVPTTSGNNATLMETAFQAGKRLVE
>NC_013216.1|WP_015758442.1|3187618_3188284_-|TerD-family-protein
MAISLIKGQKIDLYKLDQGLKSIAMCLSLNTPANDFLGAVLLTDISGRVRNTRDFLYYDNLSNSDQSVFFTSENNRRVNVHLDKVSPLVQKIILGLAAKKTSNKIPSLTFKLCNLENGKDIAYFSISEESGDTALVIAELYRHNESWKLSAIGSGFAGGFEALCASYGVEIKNSIFSSKKEELAILKHLARIDTFINNRQKNEYEKSQMSMGIVDTSIFGR
>NC_013216.1|WP_015758441.1|3186310_3187609_-|M48-family-metallopeptidase
MDELSFARIVTMSFYYAASSEDRTYLINRLKPVLTQKGTSVDLSFNTLKHEAQLLTSNQKLLLMTYFHMYVLLRDRNLLEDADIKSIRDVFLVSDDFVAYYMRSMRRAHYKKWIDESSLLECILNPCEEFQKWAEDTTYGAVQEGCYIKKRILHGLSKTEYEHPQDTAAMEALSKIPGIDKLVRKVNEHGLDKLYRVVYSGSNIKVTTRNFPQLYRALLTVCEVLNVGKIPEFYVEQGFINALTVGVENPIVVIKSAAISLLSYDELLFLLGHEVAHIKSEHMLYHQIAQIFPFISGLMGAIGSLVGSGLQVALLNWYRKSEYTADRGGLLACQNINAAVSAMMKIAGAPMRYYKALNPADFLEQAREFEGMDDDKMNTMAKYLSIMFADHPWTVMRASEMDKWVNNGIYRKVVEKCSGCSSLPESMRVYDG
>NC_013216.1|WP_015758440.1|3185217_3186318_-|radical-SAM-protein
MDDKQICFIVKVTTRCNLACSYCYEEKTDEDMDLSVVESLTQKALAATSRVQFCWHGGETLLRGISFYEEVVSCQKRFRGEHNKILNTLQTNGLLLDEDWYAWFSGSGFRVGISCDGPTCHDINRKTIAGNGSFKNILTTLSKMRETKNDRLCGGLLAVVTPEMLEHSENLLEEFILLGVKKLDFLRYKAPDGGLSTEEYYGFIRSIFNQWLKLDDASLKIRTIDSTLNYFIRGKSRLCRYLGDCKRFLTVRPNGDVYPCECLHGSSMYLKLGNILLDDLNDIYRKAGQVIKQHKLPPSCSDCFFTALCRNACAGAERLEGVCLEKKMFFRDISNLVQTVREKNVNAERRSWLWVAATLRMILQGD
>NC_013216.1|WP_015758439.1|3184414_3184990_-|TerD-family-protein
MAVNLQKGQKVDLTKGREGLSKVVVGLGWDTNKFDGPDFDLDASAFLLGDNGKCASPDDFVFYNNLTHKSGSVQHMGDNLTGDGEGDDEQITIDLSKIPANIQKIAITVTIHMAQERGQNFGLVSNAFVRVVDDAYNQELLRYDLSEDYSIETALVFCELYRKGTEWKFAAVGQGFNDGLQGLVRLYGLDA
>NC_013216.1|WP_042317295.1|3182847_3184104_-|TerD-family-protein
MSQLIMRGQKTDLTKNHPGVRSFLVGLGWDMGNTNIEVDAAAFLLQSNGKCRGDEDFVFYGNPSGRGRAITVNTDIVRSSDKAQFLIDINLIPEDVEKIAFTLTIYEGPARGHKFNQVSSSYLRVATQSNEEMVRFEMGRDFNEEVAIVVAELYRHKGEWKFNPIAMGYQGGLAALCGGFGIQVNDRPSNQSQKETAATQEKPVQKSARINLQKIELTKVGQKINLEKKAEGKLGEILINLNWNQGKKSQPKGFLGSLFGSGKNGGIDLDLGCLIEMKNGNKGAIQALGKSFGSYQNYPYIALDGDDRTGAVSTGENIRINGNFIHEFKRILVYSFIYQGVACWAEADGVVTVKQPGGPDIIVKLDEHDNRKIMCAIAMIENVNNETFSVERLVSYFAGHKEMDRAFNWNMSWTSGRK
>NC_013216.1|WP_015758437.1|3182041_3182701_-|VWA-domain-containing-protein
MFNEVEGLSRRLPVYLLLDRSGSMFGEPIEAVKQGVKYMISELKKEPQAIETAYISVITFGSDARQDVQLTELAAFKEPQIEANGTTSLGAALHILNNCFDNEVRKSTPTQKGDYKPLVFIMTDGEPTDDWENAAREIKQKSGKVANIVAVGCGPDVNTDTLKKITDIVLLMSSYQPEDFKQFFRWVSQSVKQASIKFTKDSDQPTNLPAPPPTIQIIP
>NC_013216.1|WP_015758436.1|3180641_3181979_-|protein-phosphatase-2C-domain-containing-protein
MNLVVNIGRYYTGKADMDEAKTKLIDMGFTIEETRELVMVKAADAGRTTLLEKLNSGSMSIYEFFSEAEKLYEKPNHKIIKTKNDRIIKSSDYDIVGDVLLPTRDIKLNLNYTKDKKVIQTDKIILSFRQSENKQSVIKQTEPPVKDSREKPAPKEEEVVYPRWRDLPPADQEDWVEINDSAFKEWNGWGICAASRRGKTHAHEGSHRDDSFGFDFENGWSILAAADGAGSCRLSRVGSKIGCEMAVKTLKQFLKDYKVKQIEGVNIPEETDLIKIRTFLVDTMHEVLISLKEEAAARKIEFDLLSTTMLIAVHREWMGKSLIASIQVGDGAIALWHGGSSVSILGVADSGEYASETKFITTKDIEKEFEHKVFFAIKPEVDAVAVMTDGISDDFFPVDTMMPKMFEYVYQIVLGENPADKLVDWLGYEKRGSFDDRTIVFLHRR
>NC_013216.1|WP_015758435.1|3179216_3180635_-|serine/threonine-protein-kinase
MAKRKTAKNPVATLIDGTELEYLPEIIGEGSEGIVHFTADRLSIIKFYKDEADLKDPERKDRIDHIVNKYNPTRDKISGDYWSNLYCWPAGLVVSPKLGVKVPVYPAKFFTSDGIEKKLSWFVNPKTRNFVPAAERGTWLGHLKMAITMARSTRRLHSAGLAHSDLSYNNFLGDPVSGSTVMIDVDGLVVPGLHPPKIAGTPGLIAPEVLMGTAEPSIRTDLHALAVLIYQTLLFRHPLKGPRINSTSSAEEDEQLSLGEKALFIENPTDHSNRPAKLVTGYECMGPYLSEVIPQSFVHALHSPDNRPTALDWESALVRTADLIHPCSNEKCEMKWFVLSKAMDYCCPFCKQKIALPFVPILHCYREQPGKPGNFLNEKHRLVVWHGMYIYKWHVFDNIWAGENVDKTPQGYFVYHENNWYLYNMEMDLKVIENGYPKPVPKGQHVRLSEGLQLRLSSESHGRLILTQFLRI
>NC_013216.1|WP_015758434.1|3177857_3179159_-|TerD-family-protein
MQEQINGMTTGGCLKLKAGEYKGPVNINKPVTIEGSNTTIWAGSSPVIDVTKEGVVLKNLQVEATRGSNDIAIRSEDSYGVLVENVEVRGRVTGFGAESGVWDFPDSLNFGQLPHSRAIILKMRLSLPVSCKIISHIAGIIIEPELVGPGTVEVLIKINPLFQNSILCGSFLLVSKFIRRIPVNAIVTGSAFVSNGQLIWSPSGACLPEGAPEPVAEYYQNTGVNTNDPAVDKKLTPSDKNYGLVQETGSIPVLKKGQRIELSQFNPGDKKIFVGIGWDNRLAAPIEIDAVAFILGGNKKIIRDEDLIFYGNRSSSDGSISLLGQGKGLQEKISIDLSRLPQQYERIVIALAIYEGKKKQQYFNQLERVYIKVSDESGKPMFYFEVKDFALMENSLIIAEIYRYKGKWKLAAVGAGYRDDLKALCEMYGVEIM
>NC_013216.1|WP_015758444.1|3199832_3200117_-|CRISPR-associated-endonuclease-Cas2
MNKPNFNYAIVFYDVGEKRVAKIFKICKQYLKHYQKSVFRGHITPGNYLELKNKLKKAIDPDHDFITFIQTISESSFHEESIGNTGVSPESIII
>NC_013216.1|WP_015758445.1|3200113_3201121_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGKSSDTRYIFSAGDLYQKDFSIAFRKEDGNFYIPIKDTRELYCFNDITLSTKLLQLLAKAGIVVHFFGYYENYIGTFYPKEQLLSGRLTVAQALAYEQNRLQIAGQIIKGIAKNTYFVLYHYYRHGKSELKDFLDWLRKDVSRLVDSVGNIKQLLRIEGEIWARFYQSFRVFLPESFAMNKRVKRPPDNPINALISFGNTLLYTKTITQIFHTHLNQTISFLHEPAERRFSLSLDLSEVFKPVLVCKTIFDCVNNRKIMVEKHFDKKLNYALLNELGRKVFIEAFEERLNQTFEHQTLRRRCSYKQAIRLDGYKLIKHILEGKNFVPFCMEDKK
>NC_013216.1|WP_083773539.1|3201135_3201621_-|CRISPR-associated-protein-Cas4
MLTGTVVNYYTHCQRQCWLFYHKINLEDNSEDVRVGKIMHELKKQDKDEIALEGIKLDKLTAEYVVEIKKSDADLAAARAQLEFYLVVLHDKGVNRKGRLECLEKNKQSKSVHTLILTEEDIRDCKTQYQQIEEFLKQELPPPPIRKPTCKKCAYFEYCFI
>NC_013216.1|WP_015758447.1|3201620_3204005_-|CRISPR-associated-helicase/endonuclease-Cas3
MSKINMIAPEIMRDLRYLAHTRNTGGSRETETLLAHSELTMHYYEVYCEKKGMEEIIKGLIAACGFQGEEEQTVYLLFLYAIYLHDAGKINPRFQYEVLDNGLFKEMCRQARNSHHALASAYLYIDHMYKILLNNPTLAVQKCLASFAYCICKHHGKLDNGHDFSQLETWSERYYKSDLDSSIFENIRYYMQESEVFVSPINFYILCRLLYALITGCDYCAAQEFMTGHAMRPAVIENSGENLKRCYDDSTICRSIRNYQKDPATFSGDPINALRNQLFLEAERNLLAQPEANIYYLEAPTGAGKTNMAVNLTLRVLEMDPNINSVFYVFPFNTLVEQTKKALLPFFNDQLAVINSITPVVMGREERKDKYEAAWLDYIFNNYSIVLTSHVNFFNALFGCGREQCFPLLKLCNSVVILDEIQSYKNSIWREIIGFLQSYAQQLHIKIIMMSATLPQLNQLLRTVDAKFAALVEVPQRYYRHPLFQGRVQLDFSLLEKGEIALEELKEEVLRFRDKRVLVEFIKKKTARQFFELCKEECNAVLLTGDDSAARRDKVIRRIDRGEKLILIATQVIEAGVNIDMEIGFKDISLLDSEEQFLGRINRSCLNAGGAVAYFFDFDDASLIYRGDARLRYSIQDPAIRQNLQEKRFDEIYARVFRDLIDKTSKANRKNLANLYENCAQFNCRNIEEKMRLIERSWQLFIPYVWEELDGYQVWEEFKALGSYKEMGYAQRMVEYSRLALEMSYFTFTVFRDKIPAGAEEYGGYYFIEGGERFIDDGVLNRDELEKYYGGIFL
>NC_013216.1|WP_015758448.1|3204027_3204768_-|type-I-B-CRISPR-associated-protein-Cas5
MKSLRFTLSGSAACFRQPDVNTLVYFTYNNIHKVALLGLLGAVLGLSGYRNAKLHGQEDPIFPEFYEVLSSLQISVVPNTKNGYFTKKIQYFNNSVGYASREKGGNLQVREQWLENPSWTIFLKQNNLDDIVWDKLCSSLLEGRCVYLPYLGRNDFPAQIEDMHMVELFPSRQSRIDSLFLYDGDLNALGGGGPAQYLFVETAPTGLVPKYNFYEFGRYIFTNCTVPEAVLPPLLYADGELQYCFY
>NC_013216.1|WP_015758449.1|3204780_3205713_-|type-I-CRISPR-associated-protein-Cas7
MQKTNRVYGILAVGAYMANFNADLSGYPKTTTDSHIFGSDKALKYPMKRMWLMQGDPILYIKSMQSMKNKEEGEKIQPRDLNERYTELFGNLDEKTSSKEVLGKLFSAIDVMNFGATFAEKKQNISITGAVQINQGRNLFEDTHVLTQEILSPFRNSNEKSEGKLASTMGTKIVTDEAHYVYSFSVNPANYNDFIGLADGFEGYTVEAYEKFKWAARVATTAFNTNSKSGCENELALFIEMKEDSQLYLANLDRYVTVRKKEDRILFDLSKLANFLAPRQEEIQFVELYCNPVTVDVEYGSLNCSVYSIY
>NC_013216.1|WP_015758450.1|3205699_3207499_-|hypothetical-protein
MLKELLHEFTDHQSQYPEFDADSMVVQNYRLKPGLYLRLNKDSGMEEFYVTKKMVLPENDPLFEWFKQADFASSLIEMNKPVDPKKKIHSNNLYTLFCKHDTFGVGAVNPELKEHIDRYFNALLGTRDKESAEILKAAGYEPLQDKTVEKSKALFLSSLKTVEERINHYNIKDNCYIKLFLDKNLEDYIYESGRYLLPKIFNDNKYNKKINGQVLGLSNANMGMNAKKPYLEHKTTEFKVPYRITAEEGVLLHKFFLWLNGQEKDGKPLYTGYFPVGKHDLPGLFTVASEMKVRKPAVYVHLDRGMNVTVNDYDFLPSFRDRMDNPVNFENYLDAPKYPGDKLNKLSAVEAHINAYLYGGQLVRNYYTEKIQVTDSLPQVLADQIVLTREALHAWLRKENDCPMQSCVDKVTMGVLLARLQNLKYISDLAHALNVRLSLLNYFRRGENDMGYAIEETYIVLKEKVLKTDSKEYIACQSSMEFYLAVGQLLYYYFSLSEAQKLHYDVLWRGIASAKSVEDIKREHRKHFQKYAYAIDTDNSRFNNMLSIVSSYESKEEESINLDALFYGFASSSIIYYKDKDKDKKGNEKNKEADKNAEN
>NC_013216.1|WP_015758451.1|3207503_3208202_-|CRISPR-associated-protein-Cas6
MVQCYHEILSTVRFHEDIPAREVQSALAEIINNSMIYDEQLKDFHHRNTFKFYVFSAPYPLEADRIYRKGRIYCFHLRTLDLKFALKVKQYLPKAKGLAKVISSELKNYKLKTIEELVTLTPIVCTIDNRCWMPENGIGLLSERLHVNILKKSKTWDASLSVPEEFFFNHITMLNQKPIVMSYRGKRAILLGHKIRLRVKPNPWAQQLAFTALAVGLLEKNGLGFGYCIARR
>NC_013216.1|WP_042317297.1|3208749_3210258_-|response-regulator
MNILMVDDRPENLLALEAVLISQNYNLVRAYSGEEALKCVLKNDFALILLDVQMPGLDGFETARLIRSRKKSKNVPIVFITAINQANEFVVQGYKLGAMDYIIKPFHPDTLKIKIELYISIYRDRENLEKLVQARTSDLSAANKRLQQEVMERIEVSERLAKSNERIASILESTTDAFFALDGQWRFIYVNSAAERLWGITREKLIGKIMWDEFPEAIGTSLESEYYKAVFRQKAVHFEAFLPVMHRWVEVHAYPYQDGLSVYFHDISERKRAEREIARLDRLDLVGEMAAGIAHEIRNPMTTVRGFLQLLGTKKECVKYQEYYSLMIDELDRANSIISEFLSLARNNTNDFKLQSLNCIINVLMPLITADAIKSDKNIIAQYGDIQDLLLNEQEIRQIVLNLTRNGLEAMPSGKILTIKTYMEGDEVVLSVQDQGKEIAPDILNKMGTPFFTTKNNGTGLGLATCYSIANRHNAAISVETGPAGTTFFIRFKIPNELRPDL
>NC_013216.1|WP_015758453.1|3210324_3211179_-|protein-glutamate-O-methyltransferase-CheR
MIINEAADQAKYNEQLEKLEIQLLLEGIYRHYGFDFRNYVYSSLRRRIWHRILAENLYSISGLQEKVLHSKQVMDRLLGDFCINVTEMFRDPSFFLFFRVKVLPLLKDKEFIRIWHAGCSTGEEVYSLAILLQEEGLYEKTRIYATDVSEFLLEKAKKGILPISKMQVYTQNYIKAGGTRSFSSYYKVIGGKVLFESYLKNNITFAQHNLVTDNSFNEFDVIFCRNVMIYFDKYLQSRVHKLFYDSLCLQGFLGLGNKEAIVFTDLAQCYEELSVQEKLYRKIK

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Crispr_ID: NC_013216_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_9

3327764-3331531

TypeV-U4

Consensus_repeat	Method
AGANGGNGCAACCGGNCCCACNGGTCC	CRT

81 spacers

The CRISPR arrays of NC_013216_9

>merge|NC_013216|9|3327764-3331531|CRT
CACAGGTCCGACTGGTCCGCATGGTAAAACAGGTAAAACCGGTAAAACCGGTCCCACAGGCCCGACTGGCAAAACAGGTAAAACAGGAGCAACCGGTCCCACAGGCGCAACTGGTCCTACAGGCACTGGCGCAACCGGCCCCACAGGTCCAACTGGCAGTGCAACAGGAGCAACTGGCCCCACGGGTCCTACAGGCACTGCAGGCACAACAGGTGCAACCGGTCCCACAGGTCCAACTGGTATAGCAGGTACAAGCGGCGCAACCGGCCCCACTGGTCCGACCGGTACTGCGGGTGCAGACGGTACAACCGGCCCCACAGGCCCGACTGGCATTGCGGGTGCAAATGGCGCAACCGGCCCCACAGGCCCGACAGGTACTGCGGGTGCAAATGGCGCAACCGGCCCCACAGGTCCTACGGGTACTGCGGGTGCAGATGGCGCAATCGGCCCTACAGGTCCCACGGGCACTGGTGCAACCGGTCCCACAGGTCCTACAGGTACCGCAGGAACAGACGGTGCAACCGGCCCCACAGGTCCCACCGGTACTGCAGGAACAGACGGTGCAACCGGCCCCACAGGCCCGACAGGTACTGCGGGTGCAAATGGCGCAACCGGTCCCACTGGTACAGATGGCGCAACCGGTCCCACAGGTCCCACCGGTACTGCAGGAGTAGACGGTGCAACAGGCCCCACAGGTCCTACTGGCACTTCTGGTGCAGATGGTGCAACCGGTCCCACAGGTCCCACCGGCACTTCTGGTGCAGATGGCACAACTGGTCCCACAGGTCCTACCGGTACTGCAGGAGTAGACGGTGCAACCGGCCCCACGGGTCCTACCGGCACTTCTGGTTCAGATGGTGCAACCGGCCCCACAGGCCCGACAGGTACTGCGGGTGCAGACGGAGCAACCGGCCCCACTGGTCCTACCGGTACTGCAGGAGCAGACGGTGCAACCGGTCCCACTGGCCCGACCGGTACTGCAGGAGCAGACGGCGCAACCGGTCCCACGGGCCCGACCGGTACTGCAGGAGCAGACGGCGCAACCGGTCCCACGGGTCCGACTGGCACTGCAGGAGCAGACGGTGCAACCGGCCCCACAGGCCCGACTGGTACTGCAGGTGCAGATGGCGCAACCGGCCCCACAGGTCCCACTGGCACTGCAGGTGCAGATGGCGCAACCGGCCCCACAGGCCCGACAGGTACTGCGGGTGCAGACGGCGCAACCGGCCCAACTGGTCCGACCGGTACTGCGGGTGCAGATGGTGCAACCGGTCCCACAGGTCCTACCGGTACTGCAGGAGTAGACGGTGCAACAGGCCCCACGGGTCCTACCGGCACTTCTGGTTCAGATGGTGCAACCGGCCCTACAGGTCCCACGGGCACTGCGGGAGTAGACGGTGCAACCGGTCCCACAGGTCCTACTGGTACCACAGGAACAGACGGTGCAACCGGCCCCACAGGCCCGACTGGCACTGCTGCTGCAGACGGCGCAACTGGTCCCACAGGCCCGACAGGTACTGCGGGTGCAGACGGCGCAACCGGCCCAACTGGTCCGACCGGCACTGCAGGAGCAGACGGTGCAACCGGCCCCACAGGTCCTACTGGTACTGCGGGTGCAGATGGCGCAACCGGTCCCACAGGTCCCACCGGTACTGCAGGAGTAGACGGTGCAACAGGCCCCACAGGCCCGACAGGTACTGCGGGTGCAGACGGCGCAACCGGCCCAACTGGTCCGACCGGTACTGCGGGTGCAGATGGTGCAACCGGCCCAACTGGTCCGACCGGCACTGCAGGAGCAGACGGTGCAACCGGCCCCACAGGTCCTACTGGTACTGCGGGTGCAGATGGCGCAACCGGCCCTACAGGTCCCACGGGCACTGCGGGAGTAGACGGTGCAACCGGCCCCACAGGTCCTACAGGTACCGCAGGAACAGACGGTGCAACCGGCCCCACAGGCCCGACTGGCACTGCTGGTGCAGACGGCGCAACCGGTCCCACAGGTCCGACTGGCACTGCTGGTACAGATGGCGCAACCGGTCCCACAGGTCCTACCGGTACTGCAGGAGTAGACGGTGCAACAGGCCCCACGGGTCCGACTGGCACTGCTGGTGCAGATGGTGCAACCGGTCCCACAGGTCCCACTGGCACTGCTGGTACAGATGGCGCAACCGGTCCCACAGGTCCCACCGGCACTGCTGGTACAAATGGCGCAACTGGTCCCACAGGTCCTACTGGTACTGCTGGTGCAGACGGCACAACCGGTCCCACAGGTCCCACCGGCACTGCTGGTACAAATGGCGCAACTGGTCCCACAGGTCCTACAGGTACTGCAGGAGTAGACGGTGCAACCGGCCCCACGGGTCCGACTGGCACTTCTGGTGCAGACGGCGCAACCGGCCCCACAGGTCCTACTGGTACTGCTGGAACAAACGGTGCAACCGGCCCCACAGGTCCTACTGGTACTGCTGGTGCAGACGGCGCAACCGGCCCCACAGGTCCAACTGGTACAGCAGGAACAGACGGTGCAACCGGCCCCACAGGTCCGACTGGTACTGCAGGAGCAGACGGTGCAACCGGTCCCACAGGTCCAACTGGCACTGCTGGTGCAGACGGTGCAACCGGTCCCACAGGTCCTACTGGTACTGCTGGTGCAGACGGTGCAACCGGCCCCACAGGCCCGACTGGCACTGCTGGTGCAGACGGCGCAACCGGCCCCACAGGTCCTACTGGTACTGCTGGTGCAGACGGTGCAACCGGTCCCACAGGTCCTACTGGTACTGCTGGTGCAGACGGTGCAACCGGTGCAACCGGTCCCACTGGCCCAACTGGTACTGCAGGTGCAGATGGTGCAACCGGCCCCACAGGTCCTACTGGTACTGCTGGTGCAGACGGTGCAACCGGCCCCACAGGTCCTACTGGCACTGCTGGTGCAGATGGCGCAACCGGCCCCACAGGTCCTACTGGCACTGCTGGTGCAGATGGCGCAACCGGCCCCACAGGTCCGACCGGCACTGCAGGTGTAGACGGCGCAACCGGCCCCACTGGTCCGACCGGCACTGCTGGTGCAGACGGCGCAACCGGCCCCACAGGTCCTACTGGTACTGCTGGTGCAGACGGCGCAACCGGCCCCACAGGTCCGACTGGCACTGCAGGTGCAGACGGCGCAACCGGTCCCACTGGCCCAACTGGTACAGCAGGTGTAGACGGTGCAACCGGCCCCACAGGCCCGACAGGTACTGCAGGTGCAGACGGTACAACCGGCCCCACAGGTCCGACCGGCACTGCTGGTGCAGATGGCGCAACCGGCCCCACTGGCCCGACTGGCACTGCTGGTGCAGACGGTGCAACCGGCCCCACAGGTCCGACTGGTACTGCTGGTGTAGACGGCGCAACCGGCCCCACGGGTCCGACCGGCACTGCTGGTGCAGACGGCGCAACCGGCCCCACTGGCCCGACCGGCACTGCTGGTGCAGATGGCGCAACCGGCCCCACAGGCCCGACCGGTACTGCAGGAGCAGACGGCGCAACCGGCCCCACAGGTCCAACTGGCACTGCTGGTGCAGATGGTACAACCGGTCCCACTGGCCCAACTGGTACAACAGGTGTAGACGGTGCAACCGGCCCCACAGGTCCGACTGGCACTGCAGGTGCAGATGGTGCAACCGGTCCCACAGGTCCGACTGGCACTGCGGGTGCAGACGGCGCAACTGGCCCCACAGGTCCGACTGGTACTGCAGGTGCAGACGGTGCAACCGGTCCCACAGGTCC

>NC_013216|9|8|3327764-3331531|CRT
CACAGGTCCGACTGGTCCGCATGGTAA	AACAGGTAAAACCGGTAA
AACCGGTCCCACAGGCCCGACTGGCAA	AACAGGTAAAACAGGAGC
AACCGGTCCCACAGGCGCAACTGGTCC	TACAGGCACTGGCGCAACCGGCCCCACAGGTCCAAC
TGGCAGTGCAACAGGAGCAACTGGCCC	CACGGGTCCTACAGGCAC
TGCAGGCACAACAGGTGCAACCGGTCC	CACAGGTCCAACTGGTAT
AGCAGGTACAAGCGGCGCAACCGGCCC	CACTGGTCCGACCGGTACTGCGGGTGC
AGACGGTACAACCGGCCCCACAGGCCC	GACTGGCATTGCGGGTGC
AAATGGCGCAACCGGCCCCACAGGCCC	GACAGGTACTGCGGGTGC
AAATGGCGCAACCGGCCCCACAGGTCC	TACGGGTACTGCGGGTGC
AGATGGCGCAATCGGCCCTACAGGTCC	CACGGGCACTGGTGCAACCGGTCCCACAGGTCCTACAGGTACCGCAGGAAC
AGACGGTGCAACCGGCCCCACAGGTCC	CACCGGTACTGCAGGAAC
AGACGGTGCAACCGGCCCCACAGGCCC	GACAGGTACTGCGGGTGCAAATGGCGCAACCGGTCCCACTGGTAC
AGATGGCGCAACCGGTCCCACAGGTCC	CACCGGTACTGCAGGAGT
AGACGGTGCAACAGGCCCCACAGGTCC	TACTGGCACTTCTGGTGC
AGATGGTGCAACCGGTCCCACAGGTCC	CACCGGCACTTCTGGTGC
AGATGGCACAACTGGTCCCACAGGTCC	TACCGGTACTGCAGGAGT
AGACGGTGCAACCGGCCCCACGGGTCC	TACCGGCACTTCTGGTTC
AGATGGTGCAACCGGCCCCACAGGCCC	GACAGGTACTGCGGGTGC
AGACGGAGCAACCGGCCCCACTGGTCC	TACCGGTACTGCAGGAGC
AGACGGTGCAACCGGTCCCACTGGCCC	GACCGGTACTGCAGGAGC
AGACGGCGCAACCGGTCCCACGGGCCC	GACCGGTACTGCAGGAGC
AGACGGCGCAACCGGTCCCACGGGTCC	GACTGGCACTGCAGGAGC
AGACGGTGCAACCGGCCCCACAGGCCC	GACTGGTACTGCAGGTGC
AGATGGCGCAACCGGCCCCACAGGTCC	CACTGGCACTGCAGGTGC
AGATGGCGCAACCGGCCCCACAGGCCC	GACAGGTACTGCGGGTGC
AGACGGCGCAACCGGCCCAACTGGTCC	GACCGGTACTGCGGGTGC
AGATGGTGCAACCGGTCCCACAGGTCC	TACCGGTACTGCAGGAGT
AGACGGTGCAACAGGCCCCACGGGTCC	TACCGGCACTTCTGGTTC
AGATGGTGCAACCGGCCCTACAGGTCC	CACGGGCACTGCGGGAGT
AGACGGTGCAACCGGTCCCACAGGTCC	TACTGGTACCACAGGAAC
AGACGGTGCAACCGGCCCCACAGGCCC	GACTGGCACTGCTGCTGC
AGACGGCGCAACTGGTCCCACAGGCCC	GACAGGTACTGCGGGTGC
AGACGGCGCAACCGGCCCAACTGGTCC	GACCGGCACTGCAGGAGC
AGACGGTGCAACCGGCCCCACAGGTCC	TACTGGTACTGCGGGTGC
AGATGGCGCAACCGGTCCCACAGGTCC	CACCGGTACTGCAGGAGT
AGACGGTGCAACAGGCCCCACAGGCCC	GACAGGTACTGCGGGTGC
AGACGGCGCAACCGGCCCAACTGGTCC	GACCGGTACTGCGGGTGC
AGATGGTGCAACCGGCCCAACTGGTCC	GACCGGCACTGCAGGAGC
AGACGGTGCAACCGGCCCCACAGGTCC	TACTGGTACTGCGGGTGC
AGATGGCGCAACCGGCCCTACAGGTCC	CACGGGCACTGCGGGAGT
AGACGGTGCAACCGGCCCCACAGGTCC	TACAGGTACCGCAGGAAC
AGACGGTGCAACCGGCCCCACAGGCCC	GACTGGCACTGCTGGTGC
AGACGGCGCAACCGGTCCCACAGGTCC	GACTGGCACTGCTGGTAC
AGATGGCGCAACCGGTCCCACAGGTCC	TACCGGTACTGCAGGAGT
AGACGGTGCAACAGGCCCCACGGGTCC	GACTGGCACTGCTGGTGC
AGATGGTGCAACCGGTCCCACAGGTCC	CACTGGCACTGCTGGTAC
AGATGGCGCAACCGGTCCCACAGGTCC	CACCGGCACTGCTGGTAC
AAATGGCGCAACTGGTCCCACAGGTCC	TACTGGTACTGCTGGTGC
AGACGGCACAACCGGTCCCACAGGTCC	CACCGGCACTGCTGGTAC
AAATGGCGCAACTGGTCCCACAGGTCC	TACAGGTACTGCAGGAGT
AGACGGTGCAACCGGCCCCACGGGTCC	GACTGGCACTTCTGGTGC
AGACGGCGCAACCGGCCCCACAGGTCC	TACTGGTACTGCTGGAAC
AAACGGTGCAACCGGCCCCACAGGTCC	TACTGGTACTGCTGGTGC
AGACGGCGCAACCGGCCCCACAGGTCC	AACTGGTACAGCAGGAAC
AGACGGTGCAACCGGCCCCACAGGTCC	GACTGGTACTGCAGGAGC
AGACGGTGCAACCGGTCCCACAGGTCC	AACTGGCACTGCTGGTGC
AGACGGTGCAACCGGTCCCACAGGTCC	TACTGGTACTGCTGGTGC
AGACGGTGCAACCGGCCCCACAGGCCC	GACTGGCACTGCTGGTGC
AGACGGCGCAACCGGCCCCACAGGTCC	TACTGGTACTGCTGGTGC
AGACGGTGCAACCGGTCCCACAGGTCC	TACTGGTACTGCTGGTGC
AGACGGTGCAACCGGTGCAACCGGTCC	CACTGGCCCAACTGGTACTGCAGGTGC
AGATGGTGCAACCGGCCCCACAGGTCC	TACTGGTACTGCTGGTGC
AGACGGTGCAACCGGCCCCACAGGTCC	TACTGGCACTGCTGGTGC
AGATGGCGCAACCGGCCCCACAGGTCC	TACTGGCACTGCTGGTGC
AGATGGCGCAACCGGCCCCACAGGTCC	GACCGGCACTGCAGGTGT
AGACGGCGCAACCGGCCCCACTGGTCC	GACCGGCACTGCTGGTGC
AGACGGCGCAACCGGCCCCACAGGTCC	TACTGGTACTGCTGGTGC
AGACGGCGCAACCGGCCCCACAGGTCC	GACTGGCACTGCAGGTGC
AGACGGCGCAACCGGTCCCACTGGCCC	AACTGGTACAGCAGGTGT
AGACGGTGCAACCGGCCCCACAGGCCC	GACAGGTACTGCAGGTGC
AGACGGTACAACCGGCCCCACAGGTCC	GACCGGCACTGCTGGTGC
AGATGGCGCAACCGGCCCCACTGGCCC	GACTGGCACTGCTGGTGC
AGACGGTGCAACCGGCCCCACAGGTCC	GACTGGTACTGCTGGTGT
AGACGGCGCAACCGGCCCCACGGGTCC	GACCGGCACTGCTGGTGC
AGACGGCGCAACCGGCCCCACTGGCCC	GACCGGCACTGCTGGTGC
AGATGGCGCAACCGGCCCCACAGGCCC	GACCGGTACTGCAGGAGC
AGACGGCGCAACCGGCCCCACAGGTCC	AACTGGCACTGCTGGTGC
AGATGGTACAACCGGTCCCACTGGCCC	AACTGGTACAACAGGTGT
AGACGGTGCAACCGGCCCCACAGGTCC	GACTGGCACTGCAGGTGC
AGATGGTGCAACCGGTCCCACAGGTCC	GACTGGCACTGCGGGTGC
AGACGGCGCAACTGGCCCCACAGGTCC	GACTGGTACTGCAGGTGC
AGACGGTGCAACCGGTCCCACAGGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015758575.1\|3337770_3338181_-\|molybdopterin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|376774
NC_013216.1\|WP_015758571.1\|3334646_3335054_+\|nucleoside-diphosphate-kinase-regulator	unknown	unknown	gnl\|CDD\|180236
NC_013216.1\|WP_015758565.1\|3324230_3325781_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_013216.1\|WP_015758560.1\|3313858_3314071_-\|YlzJ-like-family-protein	unknown	unknown	gnl\|CDD\|379433
NC_013216.1\|WP_015758562.1\|3314960_3316256_-\|ArsB/NhaD-family-transporter	unknown	unknown	gnl\|CDD\|238536
NC_013216.1\|WP_015758576.1\|3338511_3339060_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NC_013216.1\|WP_157863123.1\|3310612_3312895_-\|DNA-translocase-FtsK-4TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224588
NC_013216.1\|WP_015758561.1\|3314674_3314815_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_083773459.1\|3314067_3314694_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|223811
NC_013216.1\|WP_015758572.1\|3335269_3336616_-\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|223963
NC_013216.1\|WP_015758566.1\|3325777_3326866_+\|glycosyl-transferase-family-2	unknown	unknown	gnl\|CDD\|133005
NC_013216.1\|WP_015758563.1\|3316604_3317888_+\|ArsB/NhaD-family-transporter	unknown	unknown	gnl\|CDD\|238536
NC_013216.1\|WP_083773460.1\|3332065_3332518_+\|BclB-domain-containing-protein	unknown	unknown	gnl\|CDD\|274746
NC_013216.1\|WP_015758570.1\|3333128_3334226_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133005
NC_013216.1\|WP_083773540.1\|3318443_3324089_+\|DNRLRE-domain-containing-protein	unknown	unknown	gnl\|CDD\|274746
NC_013216.1\|WP_083773461.1\|3338267_3338492_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_174260365.1\|3332745_3333087_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015758574.1\|3337026_3337476_-\|DUF2975-domain-containing-protein	unknown	unknown	gnl\|CDD\|378586
NC_013216.1\|WP_015758573.1\|3336812_3337016_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
NC_013216.1\|WP_042317317.1\|3313026_3313812_-\|undecaprenyl-diphosphatase-UppP	unknown	unknown	gnl\|CDD\|376891

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015758571.1\|3334646_3335054_+\|nucleoside-diphosphate-kinase-regulator	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	7.26083e-36
NC_013216.1\|WP_015758565.1\|3324230_3325781_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	1.18705e-14
NC_013216.1\|WP_015758560.1\|3313858_3314071_-\|YlzJ-like-family-protein	gnl\|CDD\|379433	pfam14035, YlzJ, YlzJ-like protein. The YlzJ-like protein family includes the B. subtilis YlzJ protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 72 amino acids in length. There are two completely conserved residues (L and G) that may be functionally important.	1.30404e-20
NC_013216.1\|WP_015758562.1\|3314960_3316256_-\|ArsB/NhaD-family-transporter	gnl\|CDD\|238536	cd01116, P_permease, Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.	4.20422e-148
NC_013216.1\|WP_015758576.1\|3338511_3339060_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.88102e-108
NC_013216.1\|WP_157863123.1\|3310612_3312895_-\|DNA-translocase-FtsK-4TM-domain-containing-protein	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	4.90279e-166
NC_013216.1\|WP_083773459.1\|3314067_3314694_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|223811	COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	9.68197e-36
NC_013216.1\|WP_015758574.1\|3337026_3337476_-\|DUF2975-domain-containing-protein	gnl\|CDD\|378586	pfam11188, DUF2975, Protein of unknown function (DUF2975). This family of bacterial proteins have no known function. These proteins are likely to be integral membrane proteins. The proteins contain a highly conserved glutamic acid close to their C-terminus.	2.44945e-32
NC_013216.1\|WP_015758572.1\|3335269_3336616_-\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|223963	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion].	5.9188e-29
NC_013216.1\|WP_015758566.1\|3325777_3326866_+\|glycosyl-transferase-family-2	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	4.23847e-07
NC_013216.1\|WP_015758563.1\|3316604_3317888_+\|ArsB/NhaD-family-transporter	gnl\|CDD\|238536	cd01116, P_permease, Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.	3.00179e-134
NC_013216.1\|WP_083773460.1\|3332065_3332518_+\|BclB-domain-containing-protein	gnl\|CDD\|274746	TIGR03721, exospore_TM, BclB C-terminal domain. This domain occurs as the C-terminal region in a number of proteins that have extensive collagen-like triple helix repeat regions. Member domains are predicted by TmHMM to have four or five transmembrane helices. Members are found mostly in the Firmicutes, but also in Acanthamoeba polyphaga mimivirus. Members include spore surface glycoprotein BclB from Bacillus anthracis, a protein of the exosporium. The exosporium is an additional outermost spore layer, lacking in B. subtilis and most other spore formers, consisting of a basal layer and, above it, a nap of fine filaments.	4.29318e-29
NC_013216.1\|WP_015758570.1\|3333128_3334226_+\|glycosyltransferase	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	1.23932e-14
NC_013216.1\|WP_083773540.1\|3318443_3324089_+\|DNRLRE-domain-containing-protein	gnl\|CDD\|274746	TIGR03721, exospore_TM, BclB C-terminal domain. This domain occurs as the C-terminal region in a number of proteins that have extensive collagen-like triple helix repeat regions. Member domains are predicted by TmHMM to have four or five transmembrane helices. Members are found mostly in the Firmicutes, but also in Acanthamoeba polyphaga mimivirus. Members include spore surface glycoprotein BclB from Bacillus anthracis, a protein of the exosporium. The exosporium is an additional outermost spore layer, lacking in B. subtilis and most other spore formers, consisting of a basal layer and, above it, a nap of fine filaments.	5.77638e-29
NC_013216.1\|WP_015758575.1\|3337770_3338181_-\|molybdopterin-biosynthesis-protein	gnl\|CDD\|376774	pfam02391, MoaE, MoaE protein. This family contains the MoaE protein that is involved in biosynthesis of molybdopterin. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulfurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.	0.000567713
NC_013216.1\|WP_015758573.1\|3336812_3337016_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	1.15524e-29
NC_013216.1\|WP_042317317.1\|3313026_3313812_-\|undecaprenyl-diphosphatase-UppP	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	1.17281e-90

>NC_013216.1|WP_015758566.1|3325777_3326866_+|glycosyl-transferase-family-2
MNKYKVCVYSICKNEEQFVDRWIDSMNEADMIAVCDTGSSDGTVKKLKSRGAVVNSINLDPWRFDVARNISLAFVPFDMDICVCTDLDEVLEAGWRERLENVWTPETTRLRYMYTWKFNEDGSRGATYWYEKIHGRRGYRWVHPIHEILQYYDEKPEIYAYAPAIHLNHFPDPAKSRSQYLSLLELSRNENPNDSSTVFWLGREYMFYGQYDKCIKTLKEHLSLSSAVWDQERCASMRYIARSYNTKGDLAEAKKWLYKAIAECPTVREPYVDMARLGYELKDWPLVYLMLEETLKIKDKPFSYLIEESSWDNTIYDLGSIACYWIGMFEKAYELARIASGMNPHDERLEHNLKIIKERITK
>NC_013216.1|WP_015758565.1|3324230_3325781_+|glycosyltransferase-family-2-protein
MPYSSSSGKVWSERIIKRLIARCSNNSILDVGAGAGIYCTMLRPQLPTTEFIGLEIWEPYIEKYSLSSKYHNIIKEDIRDFIPQKTYGITLMGDILEHMTKEEAIKVYYKLLEFSEYVLISIPINYYPQDEYMGNPYEKHVKDDWSHDEVLSSFDCIALFYIENEIGVYIGYNPKLHTKWDILNANKTAYAVYGIYKNEENFIERFLNSVKDADEIVLCDTGSDDNTNTIINSLKEKNPDINLKTFKIFVSPWRFDDARNTALSLVSKNMDICISLDIDEYLMENWREVLDLRWDFKYTRCYHKFKTIWANNSFSAHWHDRIHVRCGYCWKLPVHEILEYKSEEKICWMDDFWVYHQPENKKSRAFYFPLLEQSVRERPDVWKTWSFLANEYMMAGRFEDAMEAIDKAFKLKNSDKGYLYKMKYNLYKNQNKQELAILNLNNYILCMPGRREPYFEKANYLHQLGRNVESYFTLKEAQKQSNEITDYHYIPNCWGKNFDGFLSRIFELAQKDGLAI
>NC_013216.1|WP_083773540.1|3318443_3324089_+|DNRLRE-domain-containing-protein
MPAGSEFIRAYLRLNVDDTDLADDVEIRVNRILSSFDTDTVTWDTSPSYIPTSIVFNVDCHQVGRLVEVDISELVRGWIDLQFPNYGIALTGKEDNKGLVAFSSSNDEAVSRPQLIIIYRFHIVGPTGPTGPHGKKGATGPTGPTGKTGKTGATGPTGPTGKTGKTGATGPTGPTGTAGTTGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGADGTTGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGVDGATGPTGPTGTAGADGATGPTGPTGTAGVDGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGSATGATGPTGPTGIAGADGTTGPTGPTGTAGADGATGPTGPTGTAGADGTTGPTGPTGTSGADGATGPTGPTGPTGTAGADGATGPTGPTGTAGVDGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGVDGATGPTGPTGTAGANGATGPTGPTGTAGTDGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGTAGADGTTGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGVDGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGSATGATGPTGPTGTAGADGSTGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGVDGATGPTGPTGTSGADGATGPTGPTGTAGTDGATGPTGPTGTAGVDGATGPTGPTGIAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGAAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTTGTDGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGVDGATGPTGPTGTAGVDGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGVDGATGPTGPTGTAGVDGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGTDGATGPTGPTGTAGVDGATGPTGPTGTAGTDGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGAAGADGATGPTGPTGAAGADGATGPTGPTGTAGTDGATGPTGPTGTAGTDGATGPTGPTGTAGVDGATGPTGPTGTAGTDGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGAAGADGATGPTGPTGAAGADGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGAAGADGATGPTGPTGTAGVDGATGPTGPTGTAGADGATGPTGPTGTAGTDGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGAAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGTAGADGATGPTGPTGIAGTGAIIPFASGGPIEMTTIALGLVGTTSIVGFGSSATGITISGGTIDLTGGVAGPLINFAFSAPRSGTITSIAAYFSTTISLSLLGTTITITAQLYSSTTPDNTFSPVPGAVVTLAPSLTGTISLGDISHGVTTGLSIPVTQETRLLLVFSATATGLDLINTVTGYASAGAAIT
>NC_013216.1|WP_015758563.1|3316604_3317888_+|ArsB/NhaD-family-transporter
MEQQAALAGGIFLIAYALIIAEKINRTIIAMIGGLMMIALGIVTQESALHHIDFNTLGLLAGMMIIVAITGKTGIFSYIAIAAAKKAKGDPIKILIYLGLITAVFSAFLDNVTTVLLMVPITFTITRKLKINPEPYLITQILASNIGGTSTLIGDPPNIMIGSVVQELSFMDFINNLALISTLILLVTIAILIVFYRKKIRTTDELKASLMILDEIEEIKDRKLLKTCFIVLGLTILGFFSHQIFDLESATIALSGAFILLLFTSKTDYDLEHAFYKVEWSTLFFFIGLFVLVGGLIDTGIIGYLARLAIKFTGGDTLITSTLIIWLSAVASAFIDNIPFVATMIPLIQDIGSRGVSNMETLWWSLSLGACLGGNGSLIGSSANLIVAGLAAQQGCKISFMRFLLIGFPLMVISIIIANIYIYLRYF
>NC_013216.1|WP_015758562.1|3314960_3316256_-|ArsB/NhaD-family-transporter
MGEVIVLNDLAFWGSIVVFIITYAIIISEKIHRMVIAMAGGLVMVLLGFISQETAVKEDIDFNTLGLLIGMMILVAITRRTGVFEAIAVWAALLTKGKPLRLLALLSIITAFASAFLDNVTTVLLIVPVTITLTDKLQINPTPYLISEIIASNIGGTATLIGDPPNIMIGSIAGLSFNDFIIHLAPVAFLILLITIGLLLFIYRKDLQVDEKSRKALLKLNYKDEIKDWQLLKKSLWVLGLTIIGFSLHGVFHLESAVIALSGAILLIILSSEEPEDILLHVEWPTIFFFTGLFVLVGGLKATGVIGELASWSLAITDGNIMKTSLLILWVSAIASAFIDNIPFVATMIPMLQEMGRLSGLNLEPVWWSLALGACLGGNGTLIGASANVIVAGIAEKNGISLSFRQFMKISFPLMIISIIISNIYIYFRYF
>NC_013216.1|WP_015758561.1|3314674_3314815_-|hypothetical-protein
MEENKLQYYVISKEFSDYTDPAAINLYKRLMVKCLAAELKNRGKLR
>NC_013216.1|WP_083773459.1|3314067_3314694_-|ATP-dependent-Clp-protease-proteolytic-subunit
MEENYDNAFFLLITSEGHLVLPPQNKTTKYEHIIPQLVALEQSTDIEGVLVILNTVGGDVEAGLAIAEMVSGLSKPTVSVVLGGGHSIGVPIATSSSYSFIAETASMTIHPIRLNGLVIGVPQTYEYLDKMQDRVVRFVTQHSHCTEEKFRELMFRTGELARDIGTVLIGKEAVDVGLINEVGGVGKAVYKLNRLIEERRQREEVPLQ
>NC_013216.1|WP_015758560.1|3313858_3314071_-|YlzJ-like-family-protein
MILYTPMQLELVFEGLEPRQESDYKEVVYKGIPLQVNAGGEVVRILSTNPYDFLRLDISPGARINLNKQF
>NC_013216.1|WP_042317317.1|3313026_3313812_-|undecaprenyl-diphosphatase-UppP
MTVWQALIMGIVQGLGEFLPISSSAHLYLLPWLFNWKDPGLTFDIALHMGTLIAVVAFFWQDWLVLAWNGLTLQKNYEGRLFWYLLLATIPGAAFGFFFEEQAETVFRDPLLVGIMLIVMGIILYVVDAYSARWKEIDQLNLPDALLIGISQAFAIIPGVSRSGITMTAARFRGMTGEAAARFSFLLSTPIILGAGLVKLKDMSSSDVNLAFVVGIISSAVIGILSIKFLLQYLASRSFAVFAWYRFIVGACVIALVLIRG
>NC_013216.1|WP_157863123.1|3310612_3312895_-|DNA-translocase-FtsK-4TM-domain-containing-protein
MKLRTRIRCEIAGLASICLGIIAALCLLNPTAGVIAYLVEAFLKGSLGEARFMVPLLFILSGLKLLIKPLKGKTPAKIYGAVLLLVVVLAFWHLPLAGKSYFRAALSGDGGGLIGAVMIFLITESFGMTGSYIILVTLFIVAVLLLTNVSLVSMLKALLEKIKYFFNKIKLALRDFLYEEVEEEALIKIEQVKRAVQINNGRDAIIGDTGKETNQGQATYSISAKEAGERDSLNDSHMEVSPALHLDFINVVSVEEQSNEKNCQTAEDLAAGDEPAVDLHSEPSGYQIPPLQLLQQPLKVKNSKTNKDISHNIQVLEKTLASFGVKARVTMVSRGPALTRYEIQPPVGIKVSRIMNLADDIALSMAVPDVRIEAPVPGKAAVGIEVPNKEVSRVYLRDLLETRDFQLSSSCLTVVLGKDIAGSPIIADLSKMPHLLIAGATGSGKSVCMNTLIASILFKASPEEVKFLIIDPKMVELTTYNGIPHLVSPVVTAPKKAATALRWAVREMEHRYRLFAAAGVKDIVRYNKLQNNKKSQGENKTLHLVVILIDELADLMMVAPADVEDAVCRLAQMARAAGMHLVVATQRPSVDVITGLIKANIPSRISFAVSSQVDSRTILDTGGAEKLLGRGDMLFSPIGAAKPLRVQGAYLSDKEVENLVNYLKQQVFPVQEQDVTGELEPVETEQALDDELLPRAVEIFIESGQASISMLQRRLRIGYARAARLIDMMEQKGIVGQFEGSKPRAVLINEEEYRQMFNCQ
>NC_013216.1|WP_083773460.1|3332065_3332518_+|BclB-domain-containing-protein
MTTIALGLVGTASIVGFVSSATGITISGETIDLTGGVTGPLINFAFSAPRSGTITSITAYFSNTILLSLTGTTITITAQLYSSTTPNNTFSPVPGAVVTLAPALTGTISLGSTSHSITTELSIPITQETRLLLVFSATATGLDLINTVTE
>NC_013216.1|WP_174260365.1|3332745_3333087_+|hypothetical-protein
MAETKKWLYKAIAECPTVREPYVDMARLGYELKDWLLVYLMLEETLKIKDEPFSYLVEESSWDNTIYDLGSIACYWIGMFEKAYELARIASGMNPHDERLEHNLKIIKERITK
>NC_013216.1|WP_015758570.1|3333128_3334226_+|glycosyltransferase
MNKLKVCVYAICKNEEKFVDRWVDSMCEADIIIVTDTGSTDNTVEKLRQRGVTVYINVIKPWRFDKARNSCLEQIPGDVDICVSTDLDEVFEAGWRENLEKSWIEGATRANYYYAWSFCPDGTPGVTFHYDRIHSRQGYKWVNPVHECLSFIGDGVEKFVWCPYVRLLHYPDSSKDRSSYLTLLELAVAERPEDPRNYHYLGREYMFAGMWNECIENLKKHLSLPNSCWKEERSASMRFIARAFKAQVNYIEAKSWLYKAIAETPYLREPYVEMAKLMYEDKDWAGIYHMVMEALKIKERSTYINDAWCWDYTIYDLGALACYYLGLTGASLEYAQIALEMSPNDERLKSNYEIIKNLKNQKKRE
>NC_013216.1|WP_015758571.1|3334646_3335054_+|nucleoside-diphosphate-kinase-regulator
MSTDIYITNIDRERIKKILDKMPEGNQASDKSVKKLENELYRAIIVDSQQVPRDVITMNSKALLQLNDEDIEVSLVYPEDADLGAMKLSIFSPIGTAILGYKEGNTIEWEVPSGTSKIHIKKILYQPEAAGDYHL
>NC_013216.1|WP_015758572.1|3335269_3336616_-|B12-binding-domain-containing-radical-SAM-protein
MKIKLISPKMTLRPMDSEFKRVMSPSIALLILAALTPNEHELYIEDENVGKLNLEDKPDLVGISVNVDTSQRAYEISKHYRKQGIKVILGGIHASANSDEALAYADSVCIGEAEELWEQVIADVQTGNLKKKYYNDKPTNLANTPIPKWSLIDKSKYLYTNVVVTSRGCPFRCEFCYNSCEYVHNKFRNRPIEHVIEEVKALGTKQVMFIDDNFIGNIIWTKEFLRQIKPLYLKWHAAVSANLVQHLDLLDEMKESGCESLFIGFETINKASIESVSKYQNNIESYEKLIQEIHSRGIMVNASLVFGFDDDEDTVFEETLNWLVKNKIETMTAHILTPYPGTKIYQRLKSQSRIIDHEPTHYNTSYVVFSPNKMTQQQLYEGYLKIYEDFYSIKNIIKRLPNDRNQRIPYLLFNFVYRKFGKITSKIASFGLMNNLGKSARKLSYGID
>NC_013216.1|WP_015758573.1|3336812_3337016_-|helix-turn-helix-transcriptional-regulator
MAIIINIDVMLAKRKMSVTELSERVGITMANLSILKNGKAKAIRLSTLEAICKALECQPGDILEYKG
>NC_013216.1|WP_015758574.1|3337026_3337476_-|DUF2975-domain-containing-protein
MKPETLFLKVVVYLIGIAILGLCVFGLPSLANYLHYPVLIGMYAAAIPFFFALYQTLKLLSYIDKNKAFSELSVKALKNIKYCAIIISILYAGLIPLLFPIAQADDAPGITALGLTITFAAIVIAVFAAVLQKLLKNAIDIKSENDLTV
>NC_013216.1|WP_015758575.1|3337770_3338181_-|molybdopterin-biosynthesis-protein
MINEKMKKIAPSIDEWLKEAKSDPMALQEGMFLVHNGVVRQTPKAKVRQGLDDGSFVKGMEFAYDAVKVDAAIAETYKMEGIFYVKVWLNEGLLEVGDDIMYVLIGGDIRPHVVGALQFLVEKIKTECVTEIEQKL
>NC_013216.1|WP_083773461.1|3338267_3338492_-|hypothetical-protein
MTGILGENSIISETMMIPKPICEYCGKGFKSKGNNERKYCEHNCYTRDQFWWKEDVAEVSKKIIEFKKVNRLAK
>NC_013216.1|WP_015758576.1|3338511_3339060_-|sugar-O-acetyltransferase
MKTEKEKMLNGELYYASDSQLIKEREKSRRLTRLFNHTLETEYERRVELLKELLGSTGANLYIEPNFRCDYGYNIHVGNNFYANFDCIILDVCEVRIGDNCFIAPGVHIYTATHPLNPVERASGAEYGKPVTIGNNVWIGGKAIINPGVTIGDNVVIASGAVVTKNVPSNVVVGGNPAQVIV

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Crispr_ID: NC_013216_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_10

3748348-3749510

TypeV

Consensus_repeat	Method
GTTTTTAGTCTACCTATGAGGAATTGAAAC	PILER-CR
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CRISPRCasFinder
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CRT

17 spacers

cas14j,cas3

The CRISPR arrays of NC_013216_10

>merge|NC_013216|10|3748348-3749510|PILER-CR,CRISPRCasFinder,CRT
GTTTTTAGTCTACCTATGAGGAATTGAAACATGGTTCACGTACTTTTGGGTCCCTTTTCTCAAGTTCGTTTTTAGTCTACCTATGAGGAATTGAAACCCAAGATTTATTCCTAACATTGATGCAGTAATAAAGCGTTTTTAGTCTACCTATGAGGAATTGAAACTCTTTGTCTTTAGGCTTTTCATCTTCATCGCCCCAGCGTTTTTAGTCTACCTATGAGGAATTGAAACCACAATCGGCATGTTTAAAATGCTAAAAGCGCATACTGTTTTTAGTCTACCTATGAGGAATTGAAACGCAATTGCACAGCATCGGTGGTAAGTTTTCCATCAAGTTTTTAGTCTACCTATGAGGAATTGAAACATTGTTTCGAAGGTATTTATTGTGTCTTTATCAAAACGTTTTTAGTCTACCTATGAGGAATTGAAACTTATATTCTAACCCTGATGAAACATCTTCATTTACTTTGTTTTTAGTCTACCTATGAGGAATTGAAACCGGCTTTAGACTTCTTAGGTCTATTAGCTTCGTATAAGTTTTTAGTCTACCTATGAGGAATTGAAACTATCTTCAAACACATTACAATTGTTAGGCATACGAGTTTTTAGTCTACCTATGAGGAATTGAAACTGATACCTGCAAGCGCTCCAGTAGTGACATCCTAAGCGTTTTTAGTCTACCTATGAGGAATTGAAACACTAACCAATGAAAACAACTGTAGTTAATGTTAACTTCGTTTTTAGTCTACCTATGAGGAATTGAAACCCCGATCTTGTGGGCATGAAGAGGTCGTGTCTCTGGGTTTTTAGTCTACCTATGAGGAATTGAAACATGCTGAAAGCATTAACTAAAGTTATTTTCATTTATGTTTTTAGTCTACCTATGAGGAATTGAAACGATAACTGGTTAGCTATCTCAGTAGCCAGTGCAGCCGTTTTTAGTCTACCTATGAGGAATTGAAACCAGTGTCGGCTATCTCAGCAAGTTTATCTAATGTAGGTTTTTAGTCTACCTATGAGGAATTGAAACTCTTGCTGACCTAGCACACCGGCAAACTGCCAGGAGTTTTTAGTCTACCTATGAGGAATTGAAACAGTATATATAGGGGGATAGTGTCACGTATGTTACGCACGTTTTTAGTCTACCTATGAGGAATTGGTGT

>NC_013216|10|10|3748348-3749442|PILER-CR
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATGGTTCACGTACTTTTGGGTCCCTTTTCTCAAGTTC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CCAAGATTTATTCCTAACATTGATGCAGTAATAAAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TCTTTGTCTTTAGGCTTTTCATCTTCATCGCCCCAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CACAATCGGCATGTTTAAAATGCTAAAAGCGCATACT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	GCAATTGCACAGCATCGGTGGTAAGTTTTCCATCAA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATTGTTTCGAAGGTATTTATTGTGTCTTTATCAAAAC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TTATATTCTAACCCTGATGAAACATCTTCATTTACTTT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CGGCTTTAGACTTCTTAGGTCTATTAGCTTCGTATAA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TATCTTCAAACACATTACAATTGTTAGGCATACGA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TGATACCTGCAAGCGCTCCAGTAGTGACATCCTAAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ACTAACCAATGAAAACAACTGTAGTTAATGTTAACTTC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CCCGATCTTGTGGGCATGAAGAGGTCGTGTCTCTGG
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATGCTGAAAGCATTAACTAAAGTTATTTTCATTTAT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	GATAACTGGTTAGCTATCTCAGTAGCCAGTGCAGCC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CAGTGTCGGCTATCTCAGCAAGTTTATCTAATGTAG
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TCTTGCTGACCTAGCACACCGGCAAACTGCCAGGA
GTTTTTAGTCTACCTATGAGGAATTGAAAC

>NC_013216|10|9|3748348-3749510|CRISPRCasFinder
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATGGTTCACGTACTTTTGGGTCCCTTTTCTCAAGTTC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CCAAGATTTATTCCTAACATTGATGCAGTAATAAAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TCTTTGTCTTTAGGCTTTTCATCTTCATCGCCCCAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CACAATCGGCATGTTTAAAATGCTAAAAGCGCATACT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	GCAATTGCACAGCATCGGTGGTAAGTTTTCCATCAA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATTGTTTCGAAGGTATTTATTGTGTCTTTATCAAAAC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TTATATTCTAACCCTGATGAAACATCTTCATTTACTTT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CGGCTTTAGACTTCTTAGGTCTATTAGCTTCGTATAA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TATCTTCAAACACATTACAATTGTTAGGCATACGA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TGATACCTGCAAGCGCTCCAGTAGTGACATCCTAAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ACTAACCAATGAAAACAACTGTAGTTAATGTTAACTTC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CCCGATCTTGTGGGCATGAAGAGGTCGTGTCTCTGG
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATGCTGAAAGCATTAACTAAAGTTATTTTCATTTAT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	GATAACTGGTTAGCTATCTCAGTAGCCAGTGCAGCC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CAGTGTCGGCTATCTCAGCAAGTTTATCTAATGTAG
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TCTTGCTGACCTAGCACACCGGCAAACTGCCAGGA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	AGTATATATAGGGGGATAGTGTCACGTATGTTACGCAC
GTTTTTAGTCTACCTATGAGGAATTGGTGT

>NC_013216|10|9|3748348-3749510|CRT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATGGTTCACGTACTTTTGGGTCCCTTTTCTCAAGTTC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CCAAGATTTATTCCTAACATTGATGCAGTAATAAAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TCTTTGTCTTTAGGCTTTTCATCTTCATCGCCCCAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CACAATCGGCATGTTTAAAATGCTAAAAGCGCATACT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	GCAATTGCACAGCATCGGTGGTAAGTTTTCCATCAA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATTGTTTCGAAGGTATTTATTGTGTCTTTATCAAAAC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TTATATTCTAACCCTGATGAAACATCTTCATTTACTTT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CGGCTTTAGACTTCTTAGGTCTATTAGCTTCGTATAA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TATCTTCAAACACATTACAATTGTTAGGCATACGA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TGATACCTGCAAGCGCTCCAGTAGTGACATCCTAAGC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ACTAACCAATGAAAACAACTGTAGTTAATGTTAACTTC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CCCGATCTTGTGGGCATGAAGAGGTCGTGTCTCTGG
GTTTTTAGTCTACCTATGAGGAATTGAAAC	ATGCTGAAAGCATTAACTAAAGTTATTTTCATTTAT
GTTTTTAGTCTACCTATGAGGAATTGAAAC	GATAACTGGTTAGCTATCTCAGTAGCCAGTGCAGCC
GTTTTTAGTCTACCTATGAGGAATTGAAAC	CAGTGTCGGCTATCTCAGCAAGTTTATCTAATGTAG
GTTTTTAGTCTACCTATGAGGAATTGAAAC	TCTTGCTGACCTAGCACACCGGCAAACTGCCAGGA
GTTTTTAGTCTACCTATGAGGAATTGAAAC	AGTATATATAGGGGGATAGTGTCACGTATGTTACGCAC
GTTTTTAGTCTACCTATGAGGAATTGGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015758966.1\|3766770_3767598_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NC_013216.1\|WP_015758963.1\|3763620_3763977_-\|YlbF-family-regulator	unknown	unknown	gnl\|CDD\|377611
NC_013216.1\|WP_015758953.1\|3743535_3743919_-\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304
NC_013216.1\|WP_042316140.1\|3740946_3741270_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NC_013216.1\|WP_015758950.1\|3739701_3740094_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_042317421.1\|3762702_3763551_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|320695
NC_013216.1\|WP_015758958.1\|3756886_3759577_-\|DEAD/DEAH-box-helicase	cas3	mkCas0139_cas3_CAS-I	gnl\|CDD\|274800
NC_013216.1\|WP_157863003.1\|3740546_3740687_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015758952.1\|3741980_3743264_+\|nickel-pincer-cofactor-biosynthesis-protein-LarC	unknown	unknown	gnl\|CDD\|235249
NC_013216.1\|WP_042317424.1\|3764235_3765174_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NC_013216.1\|WP_015756076.1\|3747492_3747897_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_013216.1\|WP_083773484.1\|3741269_3741446_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235016
NC_013216.1\|WP_157863004.1\|3750385_3750556_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015758955.1\|3746395_3747487_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NC_013216.1\|WP_015758956.1\|3749634_3750078_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_083773485.1\|3745427_3745922_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425
NC_013216.1\|WP_052292968.1\|3744031_3744214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226425
NC_013216.1\|WP_015758959.1\|3759765_3761106_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|180536
NC_013216.1\|WP_015758960.1\|3761211_3762117_-\|GerMN-domain-containing-protein	unknown	unknown	gnl\|CDD\|378464
NC_013216.1\|WP_015758965.1\|3765897_3766761_-\|agmatinase	unknown	unknown	gnl\|CDD\|212539

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015758966.1\|3766770_3767598_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	4.32962e-158
NC_013216.1\|WP_015758963.1\|3763620_3763977_-\|YlbF-family-regulator	gnl\|CDD\|377611	pfam06133, Com_YlbF, Control of competence regulator ComK, YlbF/YmcA. YlbF Is a family of short Gram-positive and archaeal proteins that includes both YlbF and YmcA which may interact synergistically. The family is necessary for correct biofilm formation, as null mutants of ymcA and ylbF fail to form pellicles at air-liquid interfaces and grow on solid media as smooth, undifferentiated colonies. During development, YmcA, YlbF and YaaT, family PSPI, pfam04468, interact directly with one another forming a stable ternary complex, in vitro. All three proteins are required for competence, sporulation and the formation of biofilms. The YmcA-YlbF-YaaT complex affects the phosphotransfer between Spo0F and Spo0B, thus accelerating the production of Spo0A~P. The three processes of biofilm formation, mature spore formation and competence all require the active, phosphorylated form of Spo0A, as Spo0A-P.	2.19975e-16
NC_013216.1\|WP_015758953.1\|3743535_3743919_-\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	6.87537e-55
NC_013216.1\|WP_042316140.1\|3740946_3741270_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	2.07552e-44
NC_013216.1\|WP_015758958.1\|3756886_3759577_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	4.60729e-179
NC_013216.1\|WP_015758952.1\|3741980_3743264_+\|nickel-pincer-cofactor-biosynthesis-protein-LarC	gnl\|CDD\|235249	PRK04194, PRK04194, nickel pincer cofactor biosynthesis protein LarC.	0
NC_013216.1\|WP_042317424.1\|3764235_3765174_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	9.57428e-72
NC_013216.1\|WP_015756076.1\|3747492_3747897_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	5.17819e-46
NC_013216.1\|WP_083773484.1\|3741269_3741446_-\|hypothetical-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	1.197e-18
NC_013216.1\|WP_015758960.1\|3761211_3762117_-\|GerMN-domain-containing-protein	gnl\|CDD\|378464	pfam10646, Germane, Sporulation and spore germination. The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.	4.31491e-17
NC_013216.1\|WP_015758955.1\|3746395_3747487_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.2878e-56
NC_013216.1\|WP_042317421.1\|3762702_3763551_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|320695	cd07336, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	5.52584e-158
NC_013216.1\|WP_083773485.1\|3745427_3745922_-\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	2.3319e-72
NC_013216.1\|WP_052292968.1\|3744031_3744214_-\|hypothetical-protein	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	4.76733e-18
NC_013216.1\|WP_015758959.1\|3759765_3761106_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|180536	PRK06347, PRK06347, 1,4-beta-N-acetylmuramoylhydrolase.	3.36634e-17
NC_013216.1\|WP_015758965.1\|3765897_3766761_-\|agmatinase	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	3.76376e-127

>NC_013216.1|WP_015756076.1|3747492_3747897_-|IS200/IS605-family-transposase
MSKLDTNSHSVFLLTYHLILVVKYRRKVINDTIANRIKEIGEYIAPKYNISFLEYNHDKDHTRILFKAHPNTEISKYINAFKSASSRLIKKEFPEVRKQLWKEYFWSQSFCLLTTGGAPIEVIKKYIETQGEKR
>NC_013216.1|WP_015758955.1|3746395_3747487_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MQIVYRFEMRPTKEQQKKMFHTLKLCRKLYNWSLSERQRVYKETGQGLTYNKQQNMLPGYTKEHLEYKQVHSQVMQDTLRRVDFAYQRFFAKEAGYPRFKNRDHYTSFTYPQVDAVKKTFSKPGKIYLSKIGFVKMTTHREFDASQISRVNIKYHGGKWYANLTAEVEVLENLIDSTKSIGIDVGLEHFAVLSDSTEIGTPKYYRKSERKLAKQQRRLSRKKKGSNNRGKAKTKVAKLHAKITNQRKDFLHKASLDVVQSHDIVFMEDLKIKNMVKNHYLAKSIHDASWGTFRNFVEYKCHRYGKIFLPVPPHGTSQTCLCGANVPKDLSVRVHRCPACGMVMPRDLVSAILIERRGLEMLAA
>NC_013216.1|WP_083773485.1|3745427_3745922_-|AAA-family-ATPase
MFLKKVILLRENIASFKHYPFSIPSINSLYQIEFKSNVTFFVGENGSGKSTLLEAIADKCNFNTAGGGRNNIYKVHASESALGDYIRLSWMPKITNGFFLRAESFYHFATHIDDVDDTGFRDYGGSSLHRQSHGEAFLSLFLNRFRGKAIYLLDEPESALSPSI
>NC_013216.1|WP_052292968.1|3744031_3744214_-|hypothetical-protein
MQFIIATHSPILLGYPDSVILSFDDGKITEMEYEMTDHYQITKYFLQHREKFLSKILDND
>NC_013216.1|WP_015758953.1|3743535_3743919_-|tol-pal-system-associated-acyl-CoA-thioesterase
MEIRVYYEDTDAGGVVYHSNYLKYFERGRTEYLRERGFSVGEMARQGFVFPVVHLEIDYLAPALHDDLLRVETVVLEIRKSSFTLAQQVLRVIDGKLLADGKVKLACVGPGMKPKRLPEEIIQAIKE
>NC_013216.1|WP_015758952.1|3741980_3743264_+|nickel-pincer-cofactor-biosynthesis-protein-LarC
MKILYYDCFCGISGDMNLGALLDLGVNQKYLRQELSKLNLDAEYDLQIKKDIKKEIKGTRVDVILKNEKECHKRDHTHNHSHDHHHHHNHQKDKEQYFSTVHTEHTYHEHRNLKDIEHIIKTSGLNDRVKELSLNMFMKVAEAEAMIHGNSPYEVHFHEVGATDSIIDIVGAAVCLDYLKVDKIMSSSVQLGGGFVKCAHGIIPIPAPATVEILKGVPIKFGNVPFETTTPTGAAILAANVDKFTDMVHFSIGRTGYGIGHRDMEIPNILRVYLANEEKNEEIETQYILETNIDDMNPELYGYIEEKLFERGALDVFKTPISMKKGRSAIKLSILIDEGREKDILDIVFRETTSIGIRKYKVEKIMLQRDFVRVKTQYGDITIKNSYYQGEKVKYKPEYEDCRKIASEKNIPISSVYREVYKIIEEC
>NC_013216.1|WP_083773484.1|3741269_3741446_-|hypothetical-protein
MYAAYGGVFIIMSILWGWWIDNIIPDFYDWVGTVIALLGTGIILWAPRQELQEGVNKE
>NC_013216.1|WP_042316140.1|3740946_3741270_-|YnfA-family-protein
MIKSAILFVLAGLAEIGGGYLVWLCLREKKHVFVGLAGGIILVVYGVIPTFQDYPNFGRVYAAYGGIFIILSLLWGWGIDKKKPDHYDWIGSAISLIGAAIIIWTPR
>NC_013216.1|WP_157863003.1|3740546_3740687_+|hypothetical-protein
MLDSLFSDNENEETDAEDSDTHTGGGEKADSGLLDFNFSDSGDDLF
>NC_013216.1|WP_015758950.1|3739701_3740094_-|hypothetical-protein
MAGILNILSNFVNNLHDIILYISKVIGLNLSDKDLHFWLIGALGIFIFFVTDVIFKRIAMFNVSVISFIYTFTVLLVIVFGLEIEQKITHRGNMEFADIVAGLWGFLCMFSIYLIIQIAISLIKKAINKM
>NC_013216.1|WP_015758956.1|3749634_3750078_-|hypothetical-protein
MALAHKILRIIYDCLSKNEEFDQKKFRGTQQNNEKKAVSDSLKNESAEITDLFGASDLLESAIESDDAMLEKVEALLTTFPIISNSEPNVFETFISFVNDDLPITDSPDISLNENRNVNIKASVDAPIPTENIDKPPNKKRGRKRKS
>NC_013216.1|WP_157863004.1|3750385_3750556_-|hypothetical-protein
MARIISENPELLLKLSVTSLILSLATAKLYIYQMDIINELRQDAESLENLKQAYSI
>NC_013216.1|WP_015758958.1|3756886_3759577_-|DEAD/DEAH-box-helicase
MLKGLDQKLIMNIHELPSRDATYANFPSGLKEDLVRGLAVNGISKLYSHQAKAIEQILLGRNLIITTGTSSGKSLVYIVPAINCILNNSLSTVLYLSPAKALSQNQYQNIEKFCKKILWPVSAPVISVCDGDTPLEERREILNRSNIIFSTPDFWHSSGLSRHIHWPGFLSNLQLIIIDEAHIYRGSLGNHVSHVLRRLRRLCYHYGSYPRFILCSATIANALEFAENLTGLDFVLIDKEGSHSAKKNFVFINPPQYQDKNSSQIKRKLSHYEAARIVGNYVRTGRRVINFGRSKQVVESAYRKLIEEYPDIAGQVRPYKGTLTPETRREIEGKLFDGMLKGIISTNALELGVDIGDLDVCVMSGFPGSISSVWQQAGRVGRRGKESLVVFVAGDDPLDQYLIRKPEYFFSRLCEKAVVNPNNLSFLSEHLLAAAAELPIVVEDRKYWGNILDKAVLLLRGSGLIRLERIGEQKTYRLNCRMQAFSLRGDSPNYLIKTENGKIIGRTNYDDVLLLLYPGAIFLQMGRQYRVLRVEEKSKEVIAAECAFSWRNKRTRPSIRANVAIEQLEASSQVKDVRVNTGILTVKRQTEGFTLYEYRYGKGESKLSQHSVDLPAVDLKTVGIWLEIGSETVNRLGGDSLLLALHGVEHLLRVVLPWKVMCERNDIGAYIAGHGKDGATLFLYDIYPGGVGYCEAAFNMIEEILQESLSLIETCSCKKGCPSCIHLPQCEKRNSDLDKEATRDLLLLLLGRDTIKVSNWLDRTITAVGKAVNRADLRLSARQQEKGSQADLQVKVDRLAEILGKIDFDKTSLNYITDQDKLILSAVFVLQQQPYFFVSRDDLRSLCSKIAISDYVSRLNYLKKQGLIIRDNPPQLDTSTHRLLQSMEEVFMRGRV
>NC_013216.1|WP_015758959.1|3759765_3761106_+|LysM-peptidoglycan-binding-domain-containing-protein
MSIKNKLKKSAAGTLAGISLFICSTAGLAATNYPTYNAISGDTLWIMSNKLYTSSDKIASVNSINSDSIMAGQRLVIPQSNIYKVVSGDTPYLIAKRFGISLQVFLTANNMTSSDVLYPGQQVNLPGILAYKVANKDTLSLLATQFGTTINQLTKINNLTDTNIITDQKIYIPVAETKQYTVQSGDSLYLIAQKYNLSVSDLTNVNWLSSTNLKAGQILIIPGKTSTTTSAATSSSGQSQATLWNIPSGALLYHVQEGDNQWSIAQKYNTTTEAINKTNNIKIDLILPEQALFVPKNSTQPIYGIKCPSVKAKTGYGELLDWEYVNWFFNPGSTAVIEDLQTGIKFKAHRIGGSNHADCEPLSADDTAIMKGIFGGQWNWSTRPVLVRFEGRVLAASMAGMPHSFDTLSNNAFYGMFDLHFLNSRTHNTNTIDPDHQASVRKAAGY
>NC_013216.1|WP_015758960.1|3761211_3762117_-|GerMN-domain-containing-protein
MKKKVSRNIVLYALVVAACLLMAGCSTNKTDAALESPRNTSEKKIPVTIYMNGPVKGSLDPVLVPVQREIVLKGEDSDKLRVKAAVEELIKGVTEKEKEAGLTTSLPKEVKVLNVGIKRPYVTVDFSSELQVMGGAMLISSFLEQIKYTLTEFDGIAGVILQVNGEQVGTEANPFTGDGFQFNALVRPAGGSWAKSISPSRALDNFIVSIGNGDIKEMWLWMGPGVREQYKYPDMTNISELSEGLGAWRNYKVVSENINGDKAVVIIKGDQKLEGMTEKDAQYTAYMVKENGQWKWDPKSK
>NC_013216.1|WP_042317421.1|3762702_3763551_+|zinc-metalloprotease-HtpX
MNTIKAFSLMGLLTIILVLMGRAFGGSSGALLFFIIAMGMNFISYFFSDKIAIMMTRSQPVSRAEAPELYDIVKRLSERANLPMPKLYITPSHQPNAFATGRNPSHAAVAVTQGIMQMLNRNELEGVLAHELAHIKNRDILISTIAAALAGAITMIGNMLQWTAMFGGLRGDDEEGGGIFGLIGTLFMAILAPIAAALIQMAISRSREFEADATGARIAGHPDGLANALLRMEQAARQIPMQLNPAASHMFIVNPLSVQNIARLFSTHPPIEERVRRLQNMR
>NC_013216.1|WP_015758963.1|3763620_3763977_-|YlbF-family-regulator
MVVLDDALSLGQKLSQTSEYRAMKEAEEMMGNDQVARKAYKAYQNLRNSYQRMEQMGHQLTKENMDKLINVQLEMMKNPLVKTYTERKEDFMNLLKQVDQKISEGLTGIKPSACGPST
>NC_013216.1|WP_042317424.1|3764235_3765174_+|ADP-ribosylglycohydrolase-family-protein
MNLLERIKGGLFGLAAGDALGATLEFMNRDEIQRKYGVLKDIIGEGWLGLQPGECTDDTAMTLAVAMGIQDNPGNPHRAVGQHFVSWYDTKPRDIGNIVSTSIYNFKKYDSWAEASQKTHVSLSNRSAGNGSLMRTLPVSLAYRHDKDKMCRISAQISHMTHYDSQAAAACIFYNLLVLSALEGNPDKDSMIFTALAEAKAYCSANLPALPKGYWEDIANSISLRKNQIWASGFVLDSLIAALWVFYHFPDFESTVIEAVNLGDDADTVGAICGGLAGCFYGYESIPGRWLEKLKVKDTIEKTARGLLDLNV
>NC_013216.1|WP_015758965.1|3765897_3766761_-|agmatinase
MNGLVERNTRFMGCSDSYEQSAVVITGVPMDFTVSFRPGSRFGPQEIRQVSFGLEEYSYYLNRDLRDFTFFDYGDLILPYGNIKECLKRIGQVAEKLFSEGKFPLVLGGEHLISLPFIEKAAAFYPGLALIHLDAHADLREDYMGEVYSHATVIRRAVEAVGGRNVYQFGIRSGDGSEFAYARKETNFYPDEVIGPLKKILQQLGDRPVYVTMDIDVVDPAYAPGTGTAEPGGITSREALQVIHLLGQTRVIGFDLVEVSPPYDATQRTSLLAAKLVREIILSFGGK
>NC_013216.1|WP_015758966.1|3766770_3767598_-|polyamine-aminopropyltransferase
MEFWFTEDQSKDLRIGCRILETIHSETTPFQKLAVINTAQFGRMLVLDNVIQTTVKDEFVYHEMIAHVALNTHPNPKKVLIIGGGDGGVVREVVKHTGVEKVVHVEIDGRVIEVSKKYLPEISCALDNPRVEVIIDDGIKHVQEYKDTYDVIIIDSTDPVGPAVGLFSAEFYRSVSEALTQDGLFVAQTESPFYNEELITRIQKDVADIFPVTSLYLACVPTYPGGLWSFTIGSKIYDPQKADTTRFSELATRYYSPVVHKASFVLPPFVQNLLK

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Crispr_ID: NC_013216_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_11

3834582-3836462

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CRT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	PILER-CR

28 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_013216_11

>merge|NC_013216|11|3834582-3836462|CRISPRCasFinder,CRT,PILER-CR
CAAAAAACACACGCCCCCGTGTAGGGAGCGACCTATTTTAGCTATTATAGAGTCTTTGTTTGCAAAATTTCAATCCACGCCCCCGTGTAGGGAGCGACTTGCCGTGAGTGGTCCAGGCGATGCACTGTTTTGGATTTCAATCCACGCCCCCGTGTAGGGAGCGACTACATACATGCATGTATGTGGTATATTATATATAATTTCAATCCACGCCCCCGTGTAGGGAGCGACAGAAAAATTATTTACAAATGGCACTCGAAAGGGTATTTCAATCCACGCCCCCGTGTAGGGAGCGACTTAATGTCTCCTAAGTGCTTCATGTTCGGAAAGTATTTCAATCCACGCCCCCGTGTAGGGAGCGACCTGTGATTGATAGTGGCTTAATTGTTCTTTTGCCATTTCAATCCACGCCCCCGTGTAGGGAGCGACGCGCAATACTGGGGAGTCGCCCAGCGTCGTAAAAATTTCAATCCACGCCCCCGTGTAGGGAGCGACCCAATTCGGTTCTGTTGCTGACATAGCCGCAATCATTTCAATCCACGCCCCCGTGTAGGGAGCGACCTACCGCATTCGTTCCAACGTTTATTGTAGAGCCTATTTCAATCCACGCCCCCGTGTAGGGAGCGACTTGTGCGGCTAGAAACAATAAGTCTCTAACCTTTATTTCAATCCACGCCCCCGTGTAGGGAGCGACTGTAGACATTATAAACTTCTCTATTCATACAGATATTTCAATCCACGCCCCCGTGTAGGGAGCGACGGAGGGGTTAAAGTGATTGTCTGCCAGCGTTTCTATTTCAATCCACGCCCCCGTGTAGGGAGCGACCTGAATATCGCTCACATTATCCTCCTCCCTACTAATTTCAATCCACGCCCCCGTGTAGGGAGCGACCAGCCTAATCTCCCTGGCAGTGGTTTGTTCAAAGATTTCAATCCACGCCCCCGTGTAGGGAGCGACCTTGACTAAGTCTTCGCTGTCCTCACCCAGATCTATTTCAATCCACGCCCCCGTGTAGGGAGCGACTCATTTTTGACTTCTATAAAATATCCACTGTCCAATTTCAATCCACGCCCCCGTGTAGGGAGCGACTTGGTTACTTTTCCTTCCCGGATGGCAGTCAAGGATTTCAATCCACGCCCCCGTGTAGGGAGCGACGGCATACAAATGCACCAGGCGGTTCTCCGTATCATTTCAATCCACGCCCCCGTGTAGGGAGCGACCAAAGGAGATACAATGGCTAATTGACCAAAAGAATTTCAATCCACGCCCCCGTGTAGGGAGCGACTGATGCAAGCAAGTTAAGCGAAAAGGCAAGAAAAGATTTCAATCCACGCCCCCGTGTAGGGAGCGACAGAAATAAAAATAGCTTGGAAGGCTGACTCGAATATTTCAATCCACGCCCCCGTGTAGGGAGCGACAGTTTCAATCTTTGCAAGCGTACGCTCCCTAAACATTTCAATCCACGCCCCCGTGTAGGGAGCGACACTCGAAAAGCTGATTTCTGGATGGCTCAAAAGCAATTTCAATCCACGCCCCCGTGTAGGGAGCGACTTCTTTTGATGAATTTCTTTTAGCCGGTGGTTTTATTTCAATCCACGCCCCCGTGTAGGGAGCGACTTCCTCCACCAATAATTCCTTCCAGTGCTTTTTATTTCAATCCACGCCCCCGTGTAGGGAGCGACTGCCCAGGCTGTTGTAAGTATCTACATATACGCAATTTCAATCCACGCCCCCGTGTAGGGAGCGACTTCCGGCAATGGCTTTAATTCCTCAGTTAATTTTATTTCAATCCACGCCCCCGTGTAGGGAGCGACGTTCCAAAGGCGTTCGCAATGGATTGAGCTTCGGATTTCAATCCACGCCCCCGTGTAGGGAGCGAC

>NC_013216|11|10|3834582-3836462|CRISPRCasFinder
CAAAAAACACACGCCCCCGTGTAGGGAGCGAC	CTATTTTAGCTATTATAGAGTCTTTGTTTGCAAA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGCCGTGAGTGGTCCAGGCGATGCACTGTTTTGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TACATACATGCATGTATGTGGTATATTATATATA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGAAAAATTATTTACAAATGGCACTCGAAAGGGT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTAATGTCTCCTAAGTGCTTCATGTTCGGAAAGT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTGTGATTGATAGTGGCTTAATTGTTCTTTTGCC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GCGCAATACTGGGGAGTCGCCCAGCGTCGTAAAA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CCAATTCGGTTCTGTTGCTGACATAGCCGCAATC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTACCGCATTCGTTCCAACGTTTATTGTAGAGCCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGTGCGGCTAGAAACAATAAGTCTCTAACCTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGTAGACATTATAAACTTCTCTATTCATACAGAT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GGAGGGGTTAAAGTGATTGTCTGCCAGCGTTTCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTGAATATCGCTCACATTATCCTCCTCCCTACTA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CAGCCTAATCTCCCTGGCAGTGGTTTGTTCAAAG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTTGACTAAGTCTTCGCTGTCCTCACCCAGATCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TCATTTTTGACTTCTATAAAATATCCACTGTCCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGGTTACTTTTCCTTCCCGGATGGCAGTCAAGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GGCATACAAATGCACCAGGCGGTTCTCCGTATC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CAAAGGAGATACAATGGCTAATTGACCAAAAGA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGATGCAAGCAAGTTAAGCGAAAAGGCAAGAAAAG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGAAATAAAAATAGCTTGGAAGGCTGACTCGAAT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGTTTCAATCTTTGCAAGCGTACGCTCCCTAAAC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	ACTCGAAAAGCTGATTTCTGGATGGCTCAAAAGCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCTTTTGATGAATTTCTTTTAGCCGGTGGTTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCCTCCACCAATAATTCCTTCCAGTGCTTTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGCCCAGGCTGTTGTAAGTATCTACATATACGCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCCGGCAATGGCTTTAATTCCTCAGTTAATTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GTTCCAAAGGCGTTCGCAATGGATTGAGCTTCGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC

>NC_013216|11|10|3834582-3836462|CRT
CAAAAAACACACGCCCCCGTGTAGGGAGCGAC	CTATTTTAGCTATTATAGAGTCTTTGTTTGCAAA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGCCGTGAGTGGTCCAGGCGATGCACTGTTTTGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TACATACATGCATGTATGTGGTATATTATATATA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGAAAAATTATTTACAAATGGCACTCGAAAGGGT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTAATGTCTCCTAAGTGCTTCATGTTCGGAAAGT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTGTGATTGATAGTGGCTTAATTGTTCTTTTGCC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GCGCAATACTGGGGAGTCGCCCAGCGTCGTAAAA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CCAATTCGGTTCTGTTGCTGACATAGCCGCAATC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTACCGCATTCGTTCCAACGTTTATTGTAGAGCCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGTGCGGCTAGAAACAATAAGTCTCTAACCTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGTAGACATTATAAACTTCTCTATTCATACAGAT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GGAGGGGTTAAAGTGATTGTCTGCCAGCGTTTCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTGAATATCGCTCACATTATCCTCCTCCCTACTA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CAGCCTAATCTCCCTGGCAGTGGTTTGTTCAAAG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTTGACTAAGTCTTCGCTGTCCTCACCCAGATCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TCATTTTTGACTTCTATAAAATATCCACTGTCCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGGTTACTTTTCCTTCCCGGATGGCAGTCAAGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GGCATACAAATGCACCAGGCGGTTCTCCGTATC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CAAAGGAGATACAATGGCTAATTGACCAAAAGA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGATGCAAGCAAGTTAAGCGAAAAGGCAAGAAAAG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGAAATAAAAATAGCTTGGAAGGCTGACTCGAAT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGTTTCAATCTTTGCAAGCGTACGCTCCCTAAAC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	ACTCGAAAAGCTGATTTCTGGATGGCTCAAAAGCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCTTTTGATGAATTTCTTTTAGCCGGTGGTTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCCTCCACCAATAATTCCTTCCAGTGCTTTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGCCCAGGCTGTTGTAAGTATCTACATATACGCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCCGGCAATGGCTTTAATTCCTCAGTTAATTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GTTCCAAAGGCGTTCGCAATGGATTGAGCTTCGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC

>NC_013216|11|11|3834648-3836462|PILER-CR
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGCCGTGAGTGGTCCAGGCGATGCACTGTTTTGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TACATACATGCATGTATGTGGTATATTATATATA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGAAAAATTATTTACAAATGGCACTCGAAAGGGT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTAATGTCTCCTAAGTGCTTCATGTTCGGAAAGT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTGTGATTGATAGTGGCTTAATTGTTCTTTTGCC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GCGCAATACTGGGGAGTCGCCCAGCGTCGTAAAA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CCAATTCGGTTCTGTTGCTGACATAGCCGCAATC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTACCGCATTCGTTCCAACGTTTATTGTAGAGCCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGTGCGGCTAGAAACAATAAGTCTCTAACCTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGTAGACATTATAAACTTCTCTATTCATACAGAT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GGAGGGGTTAAAGTGATTGTCTGCCAGCGTTTCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTGAATATCGCTCACATTATCCTCCTCCCTACTA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CAGCCTAATCTCCCTGGCAGTGGTTTGTTCAAAG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CTTGACTAAGTCTTCGCTGTCCTCACCCAGATCT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TCATTTTTGACTTCTATAAAATATCCACTGTCCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTGGTTACTTTTCCTTCCCGGATGGCAGTCAAGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GGCATACAAATGCACCAGGCGGTTCTCCGTATC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	CAAAGGAGATACAATGGCTAATTGACCAAAAGA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGATGCAAGCAAGTTAAGCGAAAAGGCAAGAAAAG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGAAATAAAAATAGCTTGGAAGGCTGACTCGAAT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	AGTTTCAATCTTTGCAAGCGTACGCTCCCTAAAC
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	ACTCGAAAAGCTGATTTCTGGATGGCTCAAAAGCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCTTTTGATGAATTTCTTTTAGCCGGTGGTTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCCTCCACCAATAATTCCTTCCAGTGCTTTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TGCCCAGGCTGTTGTAAGTATCTACATATACGCA
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	TTCCGGCAATGGCTTTAATTCCTCAGTTAATTTT
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC	GTTCCAAAGGCGTTCGCAATGGATTGAGCTTCGG
ATTTCAATCCACGCCCCCGTGTAGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015759038.1\|3831256_3831526_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759045.1\|3838632_3839493_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NC_013216.1\|WP_015759037.1\|3830751_3831078_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759046.1\|3839473_3841402_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_013216.1\|WP_015759043.1\|3836930_3837962_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_013216.1\|WP_015759052.1\|3846737_3846920_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759039.1\|3831733_3831985_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759036.1\|3829769_3830129_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_042317435.1\|3841415_3842111_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_013216.1\|WP_015759048.1\|3842131_3844537_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_013216.1\|WP_015759040.1\|3832167_3833346_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	unknown	unknown	gnl\|CDD\|237023
NC_013216.1\|WP_157863009.1\|3830256_3830406_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_157863133.1\|3827807_3828233_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|376760
NC_013216.1\|WP_015759041.1\|3833965_3834280_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759051.1\|3846483_3846741_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_042316182.1\|3845743_3846253_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NC_013216.1\|WP_157863010.1\|3830392_3830545_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_042316179.1\|3837958_3838630_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_013216.1\|WP_015759035.1\|3828590_3829706_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|225191
NC_013216.1\|WP_042317434.1\|3836630_3836921_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015759040.1\|3832167_3833346_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	gnl\|CDD\|237023	PRK11921, PRK11921, anaerobic nitric oxide reductase flavorubredoxin.	0
NC_013216.1\|WP_015759045.1\|3838632_3839493_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	5.81265e-119
NC_013216.1\|WP_015759043.1\|3836930_3837962_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_013216.1\|WP_015759048.1\|3842131_3844537_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.25345e-63
NC_013216.1\|WP_157863133.1\|3827807_3828233_-\|MgtC/SapB-family-protein	gnl\|CDD\|376760	pfam02308, MgtC, MgtC family. The MgtC protein is found in an operon with the Mg2+ transporter protein MgtB. The function of MgtC and its homologs is not known.	2.15624e-33
NC_013216.1\|WP_042316182.1\|3845743_3846253_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	4.86296e-57
NC_013216.1\|WP_042317435.1\|3841415_3842111_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.51605e-98
NC_013216.1\|WP_015759046.1\|3839473_3841402_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_013216.1\|WP_042316179.1\|3837958_3838630_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.76016e-27
NC_013216.1\|WP_015759035.1\|3828590_3829706_+\|aminopeptidase	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	3.10815e-118
NC_013216.1\|WP_042317434.1\|3836630_3836921_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.27758e-31

>NC_013216.1|WP_015759041.1|3833965_3834280_-|hypothetical-protein
MPNSELANMLSSIIHEELKPIQEDLQSVKGELQVVKEELQTVNDRLDNLDQGQLDLKQGQISLEKGQRKLDKDVTLIRKELKESWKDISDFDDRITTLEKMFIL
>NC_013216.1|WP_015759040.1|3832167_3833346_+|anaerobic-nitric-oxide-reductase-flavorubredoxin
MLKIKDNIYWVGVKDWELKMFHGQEYTTHRGSTYNSYLIKDKKIALVDTVWTPFHENFVNDLEEEIGLKNIDLIVINHCEQDHAGSLAYLMEKIPETPIYCTKNGAMMIKKHFHKDWNFNVVKTGDSIDLGEYNLVFVETPMLHWPDSMATYVSGANVLLSNDAFGQHYSSSYMFNDQVDQGELYQEAIKYYANILTPFSKLVKAKIKELLSLNLSIDMIAPSHGMIWRDNPLQIVEKYDQWASGYNEGMVVILFDTMWGATKKMALAISKGLGNKGIGTKVLNIGTSDKNDLITEVFKARGVIVGSSTINKGILSDTAAILEVIKGLQFKNKIGAAFGSYGWSGESVSIVENRLKEAGIDIVAEGIKLQYDPTPEDLRKCQSFGESFADKV
>NC_013216.1|WP_015759039.1|3831733_3831985_+|hypothetical-protein
MKKIVVSVDLSKENLSDPNPAKAIVDRGCELIYCVKFGNNSFAEYVNVLAENYVTDRKIVIYPSATCSKCETYQTYTKTNPEV
>NC_013216.1|WP_015759038.1|3831256_3831526_-|hypothetical-protein
MQSKEYIEHIFENQRIHLDGNTYRFCSFKNCEVVVNQGAFVLSHCGFENCRPILKGNALNVAYFIELFFPGCLLWKSGKQNPYRKPKPE
>NC_013216.1|WP_015759037.1|3830751_3831078_-|hypothetical-protein
MSKRNKTSNANKMKKNQETALTPKAKIFIVGAAGFAVILASAVGYGTYKNNQAADNVSSPAAKTPSETTAKPIAIDPNKKEQTININGKQVPIQMSVGKKDNGNQSKP
>NC_013216.1|WP_157863010.1|3830392_3830545_-|hypothetical-protein
MTDNIGAIFDHIRDCVIYGVACPNCSTLFELDEDSDSIKCPVCDEEIRLP
>NC_013216.1|WP_157863009.1|3830256_3830406_+|hypothetical-protein
MTPESISWLHATVEKPALGKIQGSDVTAVIDPGEVHATAITEGKKSTAV
>NC_013216.1|WP_015759036.1|3829769_3830129_-|hypothetical-protein
MSQQKTFPAVEILPIGKPLFTQFPGMFTTPKGSFHFSLHRLGMNTVFTFSECFHVTFIEPAVIFYMDCAMNSAAYAHILAAIFFKAGEKRQVFYWRSREEVFVYILVALTGDRSFHPTE
>NC_013216.1|WP_015759035.1|3828590_3829706_+|aminopeptidase
MVDPRIITLARNLVNYSCDLQPGEKILIEAIGLELPFVKELIKEVCRVGGVPFVTIKDNSVNRSLLINASEEQLKMMAKYEAARMEDMDAYIGIRSGNNSAELSDVPQDKLELYNKYFINEVHMKIRVPKTKWVVLRYPSPSMSQLANTSIENFENFYFNVCNLDYEKMSQAMTPLVELMNKTDKVRIVGTGTDLTFSIKSLPAIKCAGKRNIPDGEVFSAPVKDSVNGYITYNTPAQYQGFTYENIRLEFKDGKIVQATANDTEKINKVFDTDKGARYVGEFALGVNPYITKPMKDTLFDEKIAGSIHFTPGSAYDECFNGNKSAIHWDLVYIQTLEYGGGEIYFDDVLIRKDGRFVIPQLEGLNPENLK
>NC_013216.1|WP_157863133.1|3827807_3828233_-|MgtC/SapB-family-protein
MIAGIIMGSERTIYNKPAGIRTFSLVSLGSTLIMLLSVYGAERLGIKAEVDPFRVAAQIVSGIGFIGAGVIWNSKNGVKRGITTAAELWVVSAIGMALGVGMYDLVVLVMVCIFMVMRIGHIMGKYTRNKVKREHAPEQMK
>NC_013216.1|WP_042317434.1|3836630_3836921_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDMAKFREVQHKLEKIIDTEKDSLRFYFLGNNYKNKIEHVGAKASFDVEDTLII
>NC_013216.1|WP_015759043.1|3836930_3837962_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTSPNTYLSLDGENIVILKNDAEVLRVPLHNLEGIIAFGYTGASPALMGSCAKRNIALSFMKPSGKFLGRVVGEVKGNVTLRKTQYRLSDDAAKSHKIAQSFILGKIYNTRWVVERATRDHRARLDVDKLKGVCQTLAKALKLVENSQNLEQLRGFEGESAAQYFRVLDDLILQQKDDFYFHARNKRPPLDNVNALLSFIYTLLAHDAAAALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVYADRFVISLINKREINGGGFTRMENGAVIMDEDTRKAVLKAWQSRKQEEIRHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK
>NC_013216.1|WP_042316179.1|3837958_3838630_-|CRISPR-associated-protein-Cas4
MEYNEEDFLLLSGIQHFSFCKRQWALIHIEQQWQENLRTVEGGILHEKTHDNTIKEKRGDLIISRSMAIFSRKLGITGACDVVEFHKSRDGVTLYGRDGTYKPVPVEYKRGKPKQDNMDVLQLCAQAMCLEEMLLCTIPEGFLFYGEPKRRLKVLLDEEIREQVKAICQEMHELYDRRYTPKVKPTKGCKACSLSELCLPKLCKNPSALAYMKKTISEIEVDE
>NC_013216.1|WP_015759045.1|3838632_3839493_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSRLINKVDFAVILSVKNANPNGDPLNGNRPRENYEGYGEISDVCIKRKIRNRLQDLGQDIFVQSDERRTDGFRSLKDRADGCAELKKAGKDKERYAAIACEKWIDVRSFGQVFAFKKGDEDSSVSVGIRGPVSIHSAVSVLPIEISSMQITKSVNGETGKDPDKKSPDTMGMKHRVEFGVYVFCGSINTQLAAKTGFSGEDSELIRKALITLFENDCSSARPDGSMEVCKLYWWKHNSQSGQYSSAKVHRSLRVEPKAENPKNIADFEISLEILDDLSPEIYDGI
>NC_013216.1|WP_015759046.1|3839473_3841402_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MGWIHKLYDTYENCQAEVGMAGPDGQVMPLLPIGHSTQNAQIEVILNGEGNFRSAKVLDKEETVTIIPVTEDSATRSSGIAPHPLCDKLQYVAGDYIDYVTKKNGREFFTKYMEQLEDWCGSVYSHPKVRAVFNYLKKESLIGDLISQKILVCDDKGLLAKGVKMGAGEQSDAFIRFRVETEGEEESAVWLDPQVYESYINYYLSRQKEIDLCYVRGQTIPCSDKHPAKVRNTGDKSKLISANDTVGFTFRGRFNDKSQAVRVGYETTQKGHNALRWLIDRQGYKNGDQAIVAWGTKNQFLPPFLNDTEDFFPEEPPSVATEKEFAQRLNKAIVGYGCELDTKAEIVIMGLDAATVGRLAITYYRELDGWDFLNRIKAWHSSCIWKHSYKKVPDGFNEKGKPNFKYLTFIGAPSPREITWAAYGDKASDKLKKATVERLLPCIIDGARLPYDLVSSAVNLVSNPLGLENWEWEKALTITCALIRKYRYDKSGKKEVWEMSLDENQKDRSYLFGRLLAIAQQIEEYALYTTGEKRVTNAERLMHQFKIHPYKTWGIIIDKLRPYLDRLGSKAAFLTELLTQVNAMLPFEEFTSRDKLQDSYILGYYCQREVFMEERKQRREEKQKKKLANVTERENEHEPIDK
>NC_013216.1|WP_042317435.1|3841415_3842111_-|type-I-C-CRISPR-associated-protein-Cas5
MERENRVEFKVNGRYALFSDPINRVGGEKISYQVPTYQALKGILESVYWKPTLIWIIDEVRVMNLIKTQSQGIRPVNYSGGNTLSIYTYLTNVEYQVRAHFEWNLHRPNLEQDRNENKHYIIANRMIKCGGRRDIFLGTRECQGYVEPCRFGEGEGAYDHYGTLSFGLMFHGFDYPDETGKGKLVVRLWKAEMKDGYLKFIRPEECTVKRELSAMRPKKFDETNFSELAEL
>NC_013216.1|WP_015759048.1|3842131_3844537_-|CRISPR-associated-helicase/endonuclease-Cas3
MRCAHINPSIAKEQSVKEHLYSVAELAKEFSSKISLAATGELMGMLHDMGKGTRKFDAYIRYCAQNPQDKSLKGQVNHSTAGAKLIYDSFYNTADRLQKFTAQLISLAVCSHHGGLIDCLDLRGRDKYTERMKPDEDILYDEALNYFRSECLETNQLKDLFAKAAEEIKAVITHINQLNSSAGQCWFAYGVLEKYLFSCLIDADRYDTYLFMENKARKEKVNKYALWAELAGILEAKLSSYPQESKINGLRAEISLACRNFARNGSGVYQLAVPTGSGKTLSSLRYALNHAQECDKDRIFYIIPYTTIIDQNAREIKNILGHEEMILEHHSNLIVADDEEEVVNYKLLTERWDSPIILTTMVQFLNTLFNGGTQDVRRLHHLANSVIIFDEIQAIPIKCISMFNSALSFLAGVCQATIILCTATQPLLETTEIPLKLSENPNIISDVYEKFRQFKRVDVIPKLVTGGYSAAALKDFILDRMDQFNSLLVVLNTKNSAREVFNELKAANQGLPEEKQCQVFHLSTNMCPAHRLKALQAMKEQLGCGKVICVSTQLIEAGVNISFECLVRSLAGLDSIAQAAGRCNRHGEKERGDVYIVNLEREDVSKLVDIKKGQECTERVLRDFEDNPESFDRDLLSPQAMARYYKYYFYERRTQMNYNLKGDNRGKSLYEVLAGNKEAAEAFHSRNGRPADLMLKQAFKTAGQEFQAIDENTTGILAPYEEGRDLITLINGECSLGELKRYLKKAQHYSVNLYETDRRKLEQMKGLVWLKDKTILALREGFYDEQMGVNLDRKPLDFCGV
>NC_013216.1|WP_042316182.1|3845743_3846253_+|N-acetyltransferase
MLGETALNIRLATENDLPIIVDIYNSTVPSRMVTADTTPVTIESRLAWFHEHNPDNRPIWVVEEGGNALGWLSFSFFYNRPAYNSTAEVSIYIAEEYQGKGIGKKLLAKAIHESPKLGITTILGFIFGHNEPSLQLFLKFNFEKWGYLPKIAVLDGREKDLVILGLRVV
>NC_013216.1|WP_015759051.1|3846483_3846741_-|hypothetical-protein
MTITVFYVRPQRKCNSKVIMTPEKGCKLQLFCASAFMAISTFPAHASTGAIGKAALSTFGTGGPGIVIVQMMLIACVGWLSGYIA
>NC_013216.1|WP_015759052.1|3846737_3846920_-|hypothetical-protein
MFYRLCRAVVGELANQFPPVLVVTTSTKRAAHIQQRVKNENTAGLEFKVMLLNEIKEGLL

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Crispr_ID: NC_013216_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_12

3961890-3962002

TypeV

Consensus_repeat	Method
TCATTTGTCTGCCGCAATTCTTCCTGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013216_12

>merge|NC_013216|12|3961890-3962002|CRISPRCasFinder
TCATTTGTCTGCCGCAATTCTTCCTGCTGTACTTGCAATTTAGCTTCAGAATCCCTCAGCGCTCTGGCCTGTTCTTCTAATTCCTCATTTGTCTGCCGCAATTCCTCCTGCTG

>NC_013216|12|11|3961890-3962002|CRISPRCasFinder
TCATTTGTCTGCCGCAATTCTTCCTGCTG	TACTTGCAATTTAGCTTCAGAATCCCTCAGCGCTCTGGCCTGTTCTTCTAATTCC
TCATTTGTCTGCCGCAATTCCTCCTGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_083773494.1\|3958201_3958864_-\|chemotaxis-protein-CheB	unknown	unknown	gnl\|CDD\|319752
NC_013216.1\|WP_083773495.1\|3964604_3965030_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759169.1\|3950338_3951067_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NC_013216.1\|WP_157863138.1\|3958799_3959633_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_013216.1\|WP_015759173.1\|3956246_3956573_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|366732
NC_013216.1\|WP_015759185.1\|3970620_3970944_+\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|182303
NC_013216.1\|WP_157863139.1\|3965146_3966280_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NC_013216.1\|WP_015759178.1\|3963189_3964224_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NC_013216.1\|WP_015759166.1\|3948210_3948489_+\|transcriptional-regulator	unknown	unknown	unknown
NC_013216.1\|WP_015759170.1\|3951091_3951472_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759172.1\|3953888_3956084_+\|CO-dehydrogenase/CO-methylating-acetyl-CoA-synthase-complex-subunit-beta	unknown	unknown	gnl\|CDD\|236550
NC_013216.1\|WP_015759182.1\|3967513_3969211_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NC_013216.1\|WP_015759186.1\|3970945_3971752_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130358
NC_013216.1\|WP_015759183.1\|3969588_3970161_+\|HPP-family-protein	unknown	unknown	gnl\|CDD\|377434
NC_013216.1\|WP_169306039.1\|3967171_3967321_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|225265
NC_013216.1\|WP_015759168.1\|3949849_3950107_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759171.1\|3951837_3953862_+\|anaerobic-carbon-monoxide-dehydrogenase-catalytic-subunit	unknown	unknown	gnl\|CDD\|238896
NC_013216.1\|WP_015759187.1\|3971860_3972832_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_013216.1\|WP_157863137.1\|3956580_3958209_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_013216.1\|WP_015759184.1\|3970176_3970416_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_083773494.1\|3958201_3958864_-\|chemotaxis-protein-CheB	gnl\|CDD\|319752	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB. This family contains the methylesterase CheB (EC 3.1.1.61; also known as CheB methylesterase, chemotaxis-specific methylesterase, methyl-accepting chemotaxis protein methyl-esterase, or protein methyl-esterase) domain, a phosphorylation-activated response regulator involved in reversible modification of bacterial chemotaxis receptors. Signaling output of the chemotaxis receptors is modulated by CheB and methyltransferase CheR by controlling the level of receptor methylation. cheR and cheB have a strong preference to occur in the same operon, and a subgroup contains multidomain proteins with CheB-CheR fusions. Reversible methylation of transmembrane chemoreceptors plays an important role in ligand-dependent signaling and cellular adaptation in bacterial chemotaxis. Phosphorylated CheB catalyzes deamidation of specific glutamine residues in the cytoplasmic region of the chemoreceptors and demethylation of specific methyl glutamate residues introduced into the chemoreceptors by CheR.	4.68916e-106
NC_013216.1\|WP_015759169.1\|3950338_3951067_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	0.0052752
NC_013216.1\|WP_157863138.1\|3958799_3959633_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	5.78894e-68
NC_013216.1\|WP_015759173.1\|3956246_3956573_-\|Hpt-domain-containing-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	0.000184953
NC_013216.1\|WP_015759185.1\|3970620_3970944_+\|DUF1992-domain-containing-protein	gnl\|CDD\|182303	PRK10203, PRK10203, hypothetical protein; Provisional.	1.47262e-22
NC_013216.1\|WP_157863139.1\|3965146_3966280_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.14045e-89
NC_013216.1\|WP_015759178.1\|3963189_3964224_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.34003e-85
NC_013216.1\|WP_015759172.1\|3953888_3956084_+\|CO-dehydrogenase/CO-methylating-acetyl-CoA-synthase-complex-subunit-beta	gnl\|CDD\|236550	PRK09529, PRK09529, bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed.	0
NC_013216.1\|WP_015759182.1\|3967513_3969211_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NC_013216.1\|WP_015759186.1\|3970945_3971752_-\|ABC-transporter-permease	gnl\|CDD\|130358	TIGR01291, Nodulation_protein_J, ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. [Cellular processes, Other, Transport and binding proteins, Other].	4.43805e-45
NC_013216.1\|WP_015759183.1\|3969588_3970161_+\|HPP-family-protein	gnl\|CDD\|377434	pfam04982, HPP, HPP family. These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.	6.97183e-47
NC_013216.1\|WP_169306039.1\|3967171_3967321_+\|radical-SAM-protein	gnl\|CDD\|225265	COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only].	0.000177981
NC_013216.1\|WP_015759171.1\|3951837_3953862_+\|anaerobic-carbon-monoxide-dehydrogenase-catalytic-subunit	gnl\|CDD\|238896	cd01915, CODH, Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.	0
NC_013216.1\|WP_015759187.1\|3971860_3972832_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.26007e-97
NC_013216.1\|WP_157863137.1\|3956580_3958209_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.74247e-94

>NC_013216.1|WP_157863138.1|3958799_3959633_-|protein-glutamate-O-methyltransferase-CheR
MDVNRENQNIEIRLLLDAIYLKYGYDFRNYAKASIKRRILHRMAMSGLQSISEMQHLSLYDLDFFKKLLLDFSINVTEMFRDPSFYYSLRREIIPVLRTYPYIKIWHAGCATGEEVYSMVILLKEEGIYDRCQIYATDFNQVVLQKAKEGIFPIENIKEYTINYQKAGGKESFSSYYTAKYDSVIINQSLKKNILFADHNLVTDGVFGEMNLILCRNVLIYFDKILQNRVIGLFYDSLCRNGFLCLGSKESLMFSEYGRCFEDIVKEEKIYRKKSKY
>NC_013216.1|WP_083773494.1|3958201_3958864_-|chemotaxis-protein-CheB
MVDALKTLLRRKKYIERSLNTSLKEKRVYQAVVIGVSAGGFAALSFLLPSLPEDFSLPVIIVQHLHPASGSYIVQHLNNKCSLIVKQADEKESIKPGTVYLASPNYHLLVEEDRTFSLTVDNRVNYARPSIDVLFETAARAYGEKLIGIILTGSNNDGSKGLKRIKEGGGLAVVQDPLDAEVDSMPRAALAATAVDFILSLEQIASFLMSLSKGKSYENK
>NC_013216.1|WP_157863137.1|3956580_3958209_-|response-regulator
MNEMAKVLLVDDRPQNLLVLENILVDQEVEFYKVNSGNEALALLLSHDFALVLLDVQMPGMDGFEIAELMRGIEKTKSIPIIFVTAISKEQKHIFKGYEAGAVDYLFKPLEPEILRSKVKVFLELHKQKILLQKQAEELEQKMMQLSLAQKAAEAANIAKSAFLANMSHEIRTPMNAIIGMADLLWETSLTKEQREYVGIFRTAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQANIKFLSLSYQIKPDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEKLSMQEENVFLKFSVSDTGIGIEKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGHIGVESEIEQGSTFFFSIQLKIGKEPALENGERDLQQQFTEDRSDLSLHSRGLRRRILLVDDSGDNRMLIMAYLKRTCYEIDIAENGQLAVEKFRAGKYDLVLMDMQMPVMDGYTATSIIRENEKANNLTRTPIIALTAYALKEDVLKSYDAGCTDHLTKPIKKSVLLEAIHKYIGS
>NC_013216.1|WP_015759173.1|3956246_3956573_-|Hpt-domain-containing-protein
MEIHKILSQEKIIIKVDSCLEDLIPEYLSNRQKDIKNLLEALEQVDYDSIIFIGHNMKGSGGAYGFDYITEIGCCLEVAAKERNCELIDKKVQELTNYLERIQIDFVL
>NC_013216.1|WP_015759172.1|3953888_3956084_+|CO-dehydrogenase/CO-methylating-acetyl-CoA-synthase-complex-subunit-beta
MSEAINFDQIFEGAIEPGKEPKKLFKEAYEGTITALSYAEILLNQAIRTYGKDKQIGYPDTAYYLPVIRCLSGEEIKTLGDCVPVLNRMRARVKEAKTFENARFWGEATWYAADIIEAVRYIQNTPENPLHVKPWTGFVGDPVVRSYGTKMVDWTIPGEAVILGRAKDSASAKKIVTSLMAKGLMLFLSDEIIEQCLEENVKLGIDYIAYPLGNFTQIVHAANYALRAGMMFGGIKPGDYEAQKDYQRRRVLAFALYLGEHDMVKTAAAMGCINVGFPVITDQVLPEDKQIPEWFISEPDYDKIVQVALEVRGVKITAIDIDVPIMVGPAFEGESLRKKDMFVEFGGQRTPGFELVRMAGDDIEDGTIELVGPDIDGLEPGSQLPIGIVVDVYGRKMQEDFEPVLERRVHYFTNYGEGLWHVAQRDLMWVRISKDAYAKGFRMRHIGDILYAKFKSEFSAIVDRIKITLITDEAKVLEMREVARSYYTKRDARLKELTDEGVDTFYSCLLCQTFAPTHVCVVAPERVGLCGAVSWLDAKAAFEINPHGANQPIPKGEVIDDVKGQWESFNEYTFSNSQRTVEKVNFYTIMEYPMTSCGCFEAIMAMVPECNGFMVVSREHSGMTPTGMTFSTLAGMMGGGAQMPGFMGIGKSYLLSKKFVPADGGLARLVWMPKALKDLLREGLTERAIDEGLGEDFVDKIADETIGASGEEILPFLEEKGHPALTMDSMF
>NC_013216.1|WP_015759171.1|3951837_3953862_+|anaerobic-carbon-monoxide-dehydrogenase-catalytic-subunit
MPRFKDTSLTCRSSDKSPRVVDPKSVMRTIDPAALEMIKVAQEEGIITAFDRVVAQQPQCQFGYKGICCRFCMMGPCRIKADEGPASRGICGANSWTIVARSVGLMILTGCASHAQHGNHIAHTLHMVAEGHATDYSIKDPAKLRRLSERYGVENIDSKNDMTLAKELCELALEDMAMLKGEGEVRWITKNVVPERNNLYRTHNVMPFGIHSVISDLVTQAHVGMDNDPINLVFSAVRVGLADLAGKWIATDLSDIIFGTPEPVASEANMGVLEAKNVNIILHGHNPLLSEMIVAAAREMEADAKAAGAGGITLSGICCTGNEVLMRQGVPLVTSFSSQELVICTGAVDLMVVDVQCIMPGLGPVCQCFHTKLVTTSDIVKIPGSIHIDYQEKTAMDNAKEVIAMAIEAFKERGDRPVKIPQHKQYVVAGYSLEAIYNIFASVNPENPVRVLNDAILSGELKGVAFMVGCHNLKTMQDKAHLEITKAMLANDVFVISTGCHAQVCAKHGLMDPANVETYCGDGLKSFFKRISANANMKYPIPPVLHMGSCVDNSRGAELLMDMARDLGVDTPKVPFVASAPEAMSGKATSIGTWCVDIGCPTHVGTMPPVEGCDLIYSVLTQVAGDVLGGYFILECDIEESIKKILNALEYRAWKLKIHKAVAEDLETSLSKCW
>NC_013216.1|WP_015759170.1|3951091_3951472_-|hypothetical-protein
MDQYWIGFDQVGNALDGNATLRQLEDLFSSYVLNVRFHKADVNILDVWSENPRTFGSILINDRRQRVDEGKEMHCQPPLMIATVEGREIVRLEWYEGESELALKYDLRNPRYEFAGSSYQNDSDVY
>NC_013216.1|WP_015759169.1|3950338_3951067_-|YkgJ-family-cysteine-cluster-protein
MKEEIILNLESKFNFSCHQGLECFKQCCRNINIFLSPYDVLRMKNKLGLTSQEFLNLHTLRLSFQKQRFPLVLIKMKEDENLVCPFITSYGCMVYQERPWACRIAPVDMLGNGQFGFIFKPARCHGLKEAKEQTVDEWMQEQGLGIYDQMEESFKDLPALIEFSGEKEHDGKIGELIFLVCYNTDEFKYKLFSLSFVDKLSISKEVVGKIRDDDVQLMKFGFEWLRSVLSDMQKQREAFLLL
>NC_013216.1|WP_015759168.1|3949849_3950107_+|hypothetical-protein
MSSVFYDDQDFELELSDDVMRLIDEYAEKTNRTGEEVVEYILKEFLQDQLHVFVKIAERDDKPLKKVLSRQFYKTLQSLMVAPNK
>NC_013216.1|WP_015759166.1|3948210_3948489_+|transcriptional-regulator
MHQITLNEYLTQANKRLPTEAKKVLQALFDQGSMNKEELSLTARVKRAVLDHIIMQLYALGLVDVSTEGKSKICNLTKLGNEFLNIIEAEAS
>NC_013216.1|WP_015759178.1|3963189_3964224_-|diguanylate-cyclase
MSILVVDDLPDNLNLIKTILQADGYTDILMAHSAHEAFDYLGITDDRRRGATNIDAILMDIMMPGIDGIEACNLIRAKERLRNIPIIIVTAKTDANDLQAAFAAGAVDYVKKPFNKVELLVRLRSVLKLKHEMDRRRAREKELHEVTRLLEEANRTLYRLSSLDGLTGIHNRRRLDEFLAVEWTRSVNEANPLSIIMADIDSFKAYNDTYGHLMGDDCLVQVANVLTGTLHRPSDLVARFGGEEFVAVLPKTTAEGALVVAERMRSSITELCIKHKKSTNSNCITMSFGIATHWPGQKSTPADLLLAADWAMFQAKRAGGNMVKVVDINMDTHLYDKHCSIEDI
>NC_013216.1|WP_083773495.1|3964604_3965030_+|hypothetical-protein
MIIFLRGLFVKKLLIYILLLSLLGGGCSTVPNTQTLNKNVTEQDVRNVITELINGINSGNIEIVQKYVEGAGPVAEKLIEKLHNNIRLTNIRDISIQGTTAQATVTLEIVPLKIQKDVALHFNITDVLLLNSPLGLLSLLL
>NC_013216.1|WP_157863139.1|3965146_3966280_+|MFS-transporter
MIMFISFYLLLPTLPVFVIDVLKGDKSKVGYIIGILSLTAVLVRPVSGYMLDTLSRKKVLLVALLAFILSMAAYNFVTGLTLLLVLRALHGFSWGFTTTGAGTIAADVVPPTRRGEGMGYFGLSNTFSMAIGPSLGLFIINKAGFTSLFNACVLTALLGLLFVLPISYKEQITSKDKSIMSLNSFFEAKVFSLSAMIFFIAVVYGGIVSFITIYGKDLGIKNAGTFFLVYALTLLLVRPIAGKTFDKNGPLKIMALGFISISMAFVLLFIAKGNTLFLLSAVSMGIGFGIVHPTAMAMAINRVKPYRRGAANATIMSAFDLGIGLGSIFLGILSDQTGMSYMYLTCSLIILIPLVMFYLIDAREFIKKRETKHHSHK
>NC_013216.1|WP_169306039.1|3967171_3967321_+|radical-SAM-protein
MAVWKCNECGAVIEGRCKPGKCKTCGAPKDMLIKETVEGEKKSATKKST
>NC_013216.1|WP_015759182.1|3967513_3969211_-|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MTIKPELPSNFIQNIITEDLKQNKNNGRVQTRFPPEPNGYLHIGHAKSICLNFGIARDNGGFCNLRFDDTNPSKEEVEYVDSIKADVQWLGFDWDDRMFYASDYFGRLYDYAVQLIKSGKAYVCDLSAQEIKDYRGTLTEPGRDSPYRNRSVEENLDLFERMQAGEFPDGSRVLRAKIDMASPNLNMRDPVLYRILRATHHRTGDKWCIYPMYDYAHPLSDSIEGVTHSICTMEFEDHRPLYDWVLDALELECHPQQIEFARLNLSSTVMSKRKLRILVEQGYVNGWDDPRMSTLSGLRRRGYTPEAIRDFCDRIGVAKSNSIVDIAMLEHCIREDLNARAPRVMAVLRPLKVVIDNYPENQVEELDAEYNQENPAMGSRKLPFSRVVYIEQEDFSENPPKKFFRLAPGREVRLKHAYIIKCERVVKDETTGEIIELHCTYDPETKSGVNADVRKVKGTLHWVSAAHAVTAEVRLYDHLFTKDNPEDAREGVDFKDCLNENSLEVLTDCLLEPGLAGALPGSRCQFLRHGYFIIDIEANENRLVFNRIVSLKDSWAKIQKAMTGN
>NC_013216.1|WP_015759183.1|3969588_3970161_+|HPP-family-protein
MNNSEENDQKQLAKTNVKGLAKSYLCKMKGGKCPAMNKSSFTGLLVTSIGSFMGIGLITLLATYYKLPLLLPSFGASAVLLYGACHVPMAQPRNVIGGHIISALTGVTTYQLFGNPWWAITLAVTVSIVMMTVTHTLHPPGGATAFVAVYSSQNYSFVFSPVGIGVTCLVLIAVAVNNISSQRKYPDYWY
>NC_013216.1|WP_015759184.1|3970176_3970416_-|hypothetical-protein
MNQKQAAVYAYIQKQYEVQVRLYNNILENRAKQGSDSLYYEGFMDGHFNGCILQLEMLADNNKLGIMAEELKSLYSSFK
>NC_013216.1|WP_015759185.1|3970620_3970944_+|DUF1992-domain-containing-protein
MEDIIARIAEQRILEGIRKGDFKNLEGEGKPLNLEDLSQIPVEFRASYTILKNAGVLPEEMQLHKEIVSLQRMLDCCMKEDEKQSLKTRLSKLLLKYNIMMERRCRR
>NC_013216.1|WP_015759186.1|3970945_3971752_-|ABC-transporter-permease
MKKIKRLLSGVTTVPDLSWPLVMKVFYRNMLVFKKTWQANIMFNFVEPMLYLWAMGFGLGTYVSQINGLSYIQYLAPALIASSAMFATSYEMTYGSFTRMGYQKTFHGMVATPVSMDDVVMGEILYGTCKGVLYGVVFFMVVVMFGLVKSVWALLLPVPLALMAMSFCVMSLIWTSIAPNYDSFGYFFTLFISPMFLFGGVFFPVDNLPDWAGFLPWLTPLYHAVQLIRPLILGQVSWAMLSDLIWLLIFVVLTLRIPLAMVKNRLIQ
>NC_013216.1|WP_015759187.1|3971860_3972832_-|ABC-transporter-ATP-binding-protein
MSDKVREKVVYARYLVKSYDGFEAVKGVNMEVYRGNCLGLLGPNGAGKTSIVKMICGFSPVTSGKLEVFGENIMSRGRSIKGRIGVVPQEDNLDQELTVRQNLIVYASYFRMKKALALKRSDEILEFMDLTEKSREVVDNLSGGLKRRLTIGRALINNPELLILDEPTTGLDPYARHLVWQRLRKLKEAGTTILLTTHYLEEAEQLCDMLVVIYRGKVLEQGTPQELVDRHVGQEVLELGIASEHYDSLLNGCEEMVKGSQTLGDDVLLFTNHGRELSRLVSQKAAELGLTINYRRLRASNLEDVFLKLTGESLDEESSGNLQ

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Crispr_ID: NC_013216_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_13

4211335-4211442

Orphan

Consensus_repeat	Method
GTTCTAATAGCAATCGGGCTGCCTTGAGACGTTCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013216_13

>merge|NC_013216|13|4211335-4211442|CRISPRCasFinder
GTTCTAATAGCAATCGGGCTGCCTTGAGACGTTCTTCTCGTAGTGCATGTTTTCACCCCGCTTTCATCTTGGTTCTAATAGCAATCGGGCTGCCTTGAGACGTTCTTC

>NC_013216|13|12|4211335-4211442|CRISPRCasFinder
GTTCTAATAGCAATCGGGCTGCCTTGAGACGTTCTTC	TCGTAGTGCATGTTTTCACCCCGCTTTCATCTTG
GTTCTAATAGCAATCGGGCTGCCTTGAGACGTTCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015759380.1\|4201268_4201409_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_042316282.1\|4208623_4209193_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_013216.1\|WP_015759394.1\|4218971_4219235_+\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_083773546.1\|4213886_4214564_-\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_013216.1\|WP_015759389.1\|4209850_4210015_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_157863150.1\|4211011_4211329_-\|HEPN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224807
NC_013216.1\|WP_157863022.1\|4211480_4211735_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_013216.1\|WP_015759397.1\|4221440_4221929_-\|DUF3368-domain-containing-protein	unknown	unknown	gnl\|CDD\|225269
NC_013216.1\|WP_052292977.1\|4212960_4213605_-\|maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_013216.1\|WP_015759395.1\|4219231_4219606_+\|clan-AA-aspartic-protease	unknown	unknown	gnl\|CDD\|133150
NC_013216.1\|WP_157863021.1\|4204167_4204287_-\|PD-(D/E)XK-nuclease-family-transposase	unknown	unknown	gnl\|CDD\|372314
NC_013216.1\|WP_015756032.1\|4215284_4216997_-\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NC_013216.1\|WP_015759389.1\|4220466_4220631_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759388.1\|4206350_4208597_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NC_013216.1\|WP_015759385.1\|4204436_4204685_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NC_013216.1\|WP_015759384.1\|4203657_4204023_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|377579
NC_013216.1\|WP_015759387.1\|4205186_4206209_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NC_013216.1\|WP_042316287.1\|4217903_4218536_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759398.1\|4221912_4222209_-\|UPF0175-family-protein	unknown	unknown	gnl\|CDD\|377095
NC_013216.1\|WP_015759383.1\|4203380_4203665_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_042316282.1\|4208623_4209193_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.83178e-17
NC_013216.1\|WP_083773546.1\|4213886_4214564_-\|hypothetical-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.59767e-90
NC_013216.1\|WP_015756032.1\|4215284_4216997_-\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.62285e-32
NC_013216.1\|WP_157863150.1\|4211011_4211329_-\|HEPN-domain-containing-protein	gnl\|CDD\|224807	COG1895, COG1895, Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown].	5.38324e-25
NC_013216.1\|WP_157863022.1\|4211480_4211735_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	1.95769e-08
NC_013216.1\|WP_015759397.1\|4221440_4221929_-\|DUF3368-domain-containing-protein	gnl\|CDD\|225269	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only].	4.28705e-30
NC_013216.1\|WP_052292977.1\|4212960_4213605_-\|maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.62484e-38
NC_013216.1\|WP_015759395.1\|4219231_4219606_+\|clan-AA-aspartic-protease	gnl\|CDD\|133150	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	7.42747e-16
NC_013216.1\|WP_157863021.1\|4204167_4204287_-\|PD-(D/E)XK-nuclease-family-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	0.000272087
NC_013216.1\|WP_015759388.1\|4206350_4208597_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	2.56759e-148
NC_013216.1\|WP_015759385.1\|4204436_4204685_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.07378e-08
NC_013216.1\|WP_015759384.1\|4203657_4204023_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	3.17447e-26
NC_013216.1\|WP_015759387.1\|4205186_4206209_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	1.62566e-27
NC_013216.1\|WP_015759398.1\|4221912_4222209_-\|UPF0175-family-protein	gnl\|CDD\|377095	pfam03683, UPF0175, Uncharacterized protein family (UPF0175). This family contains small proteins of unknown function.	1.05646e-21
NC_013216.1\|WP_015759383.1\|4203380_4203665_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.29444e-12

>NC_013216.1|WP_157863150.1|4211011_4211329_-|HEPN-domain-containing-protein
MYSDAVSRAYYAVFQAARAVLATKSLDSCKHSGIIGLFNQQFVKTGILPRDYGKILKSCRDLREVGDYDDFYLVSREEAFSSIENASRFIRGIKLYLKTYEDDIP
>NC_013216.1|WP_015759389.1|4209850_4210015_-|hypothetical-protein
MATVKIVYGVKDIKKKISKYLSPLEKIKMKKEKAALKELTGLWEDKDTSFFDKR
>NC_013216.1|WP_042316282.1|4208623_4209193_-|transposase
MPRKPRVWYPGATYHVMCRGNHRHNIFRDEEDYQSYLLILAWAKKYYRFLLHSYCLMSNHVHLHLETSDMDISKIMKLINMQYAVSFNKKYNFVGHLFQGRFRDELIKTDNYQLEISRYIHLNPVDAHIVEHPLDYPWSSYSVYMGVETDPLVTTEKILAYFPNSDASLYKKYVETPRQDRRKSTLNDQ
>NC_013216.1|WP_015759388.1|4206350_4208597_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MAVVVRSFAIAGVDGYLVDVETMTLHGQPVTAIVGLGDAAVKEARQRLESAIACAQYEFPKMKIVINLAPSSLKKSGSHFDLAMAIGLLIQSGQLTVPEVEQFGFIGELSLNADLRPCIGILPMAVTARKEGIRTLIVSKENIKEASVVKDINVLGFSNLKEVVNYLNGSAPYVVPDEVKGQDSVLDEVNHCGDFQDVKGQDTLLEFVVVAAAGGHNILMIGAPGCGKSMIAKRIPTILPSLSDEEAIEITKVYSVAGLLKDRNELITRRLFRAPHHNASLNSLIGGGSPIIPGEISLAHNGVLFLDEIAEFNKKTLDALRQPMEDKQVTISRVKSVCTFPSNFMLVAAMNPCPCGYYGQDKCRCSDYEVLKYHAVYIWLMMMEEYWIWLSQVKGIGPILQKKLLEKFGSPESIYLASGMELMTIAGINNKTVEKIQASRSLEQARQILNRTEKQNIRLLTYHDYLYPVQVKGFSKAPVLFYYRGNLRPNSTGVGIVGARRCTDYGKQVTKEAATFLAKQDIPVISGMAKGIDSYAHTACLKAGGFTIAILGCGVDVCYPAEHRGLMDRIAEEGVLLSEYPPQTRVRAEHFPQRNTWIAAWSNKLLIVEAGEKSGALITAQLAEKQNRQVLAVPGQIYSQESIGCNQLIHKGAKIYLHPNQLLLDSGQKKHEQRINSNEAHRNKRVNEIPPLSQIEKEIYDHLSPIPQSVEQLAGILGSNPSALLRILCVMELEGKIELFAGGMARRH
>NC_013216.1|WP_015759387.1|4205186_4206209_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MTESGQPNLKHPHHPHDKGYKQLLSNKKIFLELIKTFVQEDWVNEIEEDGLLLVDKSFVLEDFSEKEADVVYRLRTKEKDVIFYVLLELQSTVDFLMPFRLLQYMVQIWRETYNNTQKEERDRKDFRLPAIVPAVLYNGKNNWMAKMNFREMLSDYQIFGGRVLDFNYILFDVNRYKDEQLYEMANLIASVFVLDQTMNHKELIRRLRKLIMVLRKLTQDEFRQIMIWLKNVIKPRMPVHLHKEVDRIMEEANQLEVEFMIMNLEVTLDEMQQQAKKEGIKEGIKEGIKEGIKEGIKEGELKKALETARAALKEGISVDVICKITALDKEIVQKIKNELH
>NC_013216.1|WP_015759385.1|4204436_4204685_-|nucleotidyltransferase-domain-containing-protein
MVRKESEIINEISRLVQFLKKNIKVDSVILLGSYAKGTAGEESDVDIAVISPEFGQNPLKDKRLIYRTIIKEDIEPYFEIHS
>NC_013216.1|WP_157863021.1|4204167_4204287_-|PD-(D/E)XK-nuclease-family-transposase
MGFILTDGLEIHFIELGKFRKLRSKKNIKEPLHQWLLCL
>NC_013216.1|WP_015759384.1|4203657_4204023_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MEWQVEYYKKENGDVPVLDYLLTLDAKMRAKAYIEIELLEKHGSQLREPYVKLMKGTRYKGIFELRVKFASDISRIFYFTYHEKTFVLLHGFTKKTEKTPQRELERALRYKEDYERRCKDE
>NC_013216.1|WP_015759383.1|4203380_4203665_-|helix-turn-helix-transcriptional-regulator
MSKAGVKFSEVKELLMKDDEFKAEYEKLKPRYDVISQIIEARTSQNITQEELALRVGTQKSNISRLESGTYNPSLEFLAKVARCLGKEVQVTLK
>NC_013216.1|WP_015759380.1|4201268_4201409_-|hypothetical-protein
MAQALVRNVGTCPPMLRENSKWKTRKDESIDAESRGGTACSSDEAP
>NC_013216.1|WP_157863022.1|4211480_4211735_-|nucleotidyltransferase-domain-containing-protein
MLLYGSRARGDHRLDSDMDVLILVKDKKNIDRDKIYDFVLDSELEHGIDISVNIYENEQFNKLLQINAPFATNVVKEGETLWTL
>NC_013216.1|WP_052292977.1|4212960_4213605_-|maturase
MYLNDVDWTFNAIRLKTAEGNYEAINYHRFADDMVITVSGHSSKRGWAERALQRLHEQLEPLGVELNLDKTRMVNVLKGESFSFLGFDFRRVQNRSSSGYFILMTPKKKARINIKAGIRNAIKNGGSKPATDIVKQVNAKLSGWVNYFRVGNSSRAFSEVRDYTEMKIRTLLSRRKRRRKCSIGWRRWSNEYLYGVLGLYWDWKVHPLRRADGY
>NC_013216.1|WP_083773546.1|4213886_4214564_-|hypothetical-protein
MSEVGATNRLKVHSLIDKVYSKTNLQMAWQRVKANQGVGGIDKVSITTFDKVADEELEKLHMELKGETYNPLPVRRVNIPKRDKPNEKRPLGIPAIRDRVCQQALKNRIEPIFEPEFNDCSFGYRPGRSPHDAMRKIWVELMNGYHWIVDADLKDYFGSVAHDKLIDMVAERVSDGRVLGLIQQMLKAGYMEKGKIKPTPEGTPQGGLCKALHRPPYAKWKTMQS
>NC_013216.1|WP_015756032.1|4215284_4216997_-|IS1634-family-transposase
MASIIKKKKKNQFYYYLVESARVNGKPRIVRQKYLGRAEDIAKAVEGKSDLENPKYSIVLEFGTVCALYDIAKQLGVIEIIDKYAPKREQGLSVGEYMLLAAINRVVKPVSKFQIGEWYDKTMLYRMLPAPKQSLTSQRFWDNMSLLSDSAIESFENEFTQLIVDKYNLSTDLLIYDATNFFTYIDTLSADKLPQRGHSKEKRSDLKIVGLAMMVTPDFNVPLFYDVYPGNDNDSVEFKAVIEKLKNRYINICGKPGNATLVFDKGNNSLNNMDLVMSGEFAFNVVGSLRLSQNKSLLDIPIQEYESVNSDNFRNVKAYRTTLSVYNREMTVLVVCNPELFAGQMQSIAINIEKCTLKLRVLQKSLLDRVAGVTTKGRKPTVTSVQKNVATILHGEFMSDIFDVQIYEQDGLAHLDFSINIKQFNYVKEHFLGKTVLFTDNHDWPNDKIISTYRSQYHIEDDFRQMKDTTFLGFRPIHHWTDQKIKVHAFYCVLALRLCCLLNRVLHENGLKMSINKMLSRLSDIKQVITVYPKKGNSKKDRECFSLTKISAEEKRLLEVLDIGKYALGG
>NC_013216.1|WP_042316287.1|4217903_4218536_-|hypothetical-protein
MVYQTTMVILMKKTFLEAIRITEQLINDIMFMLETRTKPNYFTRPTNCKMDFKSLILFQLNFVRKTLQLELDSFFKIIKGVENSITKQGYSEARQKISPDAFIKMADAIITWYYGDNDFKTFKGYRLSAIDASVLEITNSERLRNAFWYSEGKTVKLARAKASGIYDIENDMMITSKITRYTTGERDIAIELIEKLKKSMRLGNPIRLSW
>NC_013216.1|WP_015759394.1|4218971_4219235_+|hypothetical-protein
MIWEEVKNAYPNQWVIIEAIEAYTEGDKRIIAQITVVNNFQDDNNKALLQYLQLHRKHRERELYVVHTSRPELDIIEQKWIGVRADI
>NC_013216.1|WP_015759395.1|4219231_4219606_+|clan-AA-aspartic-protease
MNLKIKYGMPFTEVVLTHKGKSFSSDNFLIDTGSASTIIAAEIAVKLGLGPEPLDVIRKIRGVGGTEFVYEKHIDRIRLGTKKLNQFKIQIGDMDYGFDIDGILGMDYLMISKIVIDLENMMLM
>NC_013216.1|WP_015759389.1|4220466_4220631_-|hypothetical-protein
MATVKIVYGVKDIKKKISKYLSPLEKIKMKKEKAALKELTGLWEDKDTSFFDKR
>NC_013216.1|WP_015759397.1|4221440_4221929_-|DUF3368-domain-containing-protein
MKAVINSSPLISLSLVGQIELLPKLYEEIIIPKSVYNEVIVKGKGKTGSDKLEIFNRFTILEAGNRVVKDTIMLELDEGEAEVIAIAKEKRIQNVIIDEFAGRQYASLLGLKVTGVLGILLTGKKLGFVEEIRSLMDLMIIHNRYISRKLYLTVLRKAEEIR
>NC_013216.1|WP_015759398.1|4221912_4222209_-|UPF0175-family-protein
MRMLNINIPISEEILFVLKKDEKSLQEEARKILALQFFKERKLSLGKAAELAGMDKNDFVILLGKNQIDIYQYTDKELEREFEAIDRFVEDFKNESGN

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Crispr_ID: NC_013216_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013216_14

4451140-4452435

TypeI

Consensus_repeat	Method
GTTTTTAGCCTATCTATGAGGAATTGAAAT	PILER-CR
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CRISPRCasFinder
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CRT

19 spacers

csa3,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_013216_14

>merge|NC_013216|14|4451140-4452435|PILER-CR,CRISPRCasFinder,CRT
ATTTCAATTCCTCATAGGTAGGCTAAAAACCGAGATAGAATTGGCTGAGGAGATAGATGAACTAAATTTCAATTCCTCATAGGTAGGCTAAAAACGTCCGGTGGGGGATTCGTTTTTCTTTACATAGTTTACGATTTCAATTCCTCATAGGTAGGCTAAAAACTTCGCCTTTTAAGGTATTGGCTAGTGGGTGATCTGCATATTTCAATTCCTCATAGGTAGGCTAAAAACATGAAAAGGTTAAGCAGTTTATGCAGTTTTTGGGAAATTTCAATTCCTCATAGGTAGGCTAAAAACTCGTGAAAAAGGATTGTTACCTACATCAGTTATCGAATTTCAATTCCTCATAGGTAGGCTAAAAACCCACCTATTCCTGAATATATTCCACAACCTACCATTAATTTCAATTCCTCATAGATAGGCTAAAAACCTTTTTTAGCCCAGCACCTACGGGCAAAAAACTCAAATTTCAATTCCTCATAGATAGGCTAAAAACGGTTGAAGCAGTTACTAATATTATCAAGCAGTTCAAATTTCAATTCCTCATAGATAGGCTAAAAACCACAATTAGACCAATTTGAGAAGGGACGGGATAGGAATTTCAATTCCTCATAGATAGGCTAAAAACGCTGCTTGCGTAGTTTACTTACCCTGTCCTCTGTCATTTCAATTCCTCATAGATAGGCTAAAAACTACAAGAGCTAAAGCTCGTTTAATAGCTCGTACTGAGGATTTCAATTCCTCATAGATAGGCTAAAAACGTATTTAGGCCAAAGCTTGCTTTTTACTAAATTAGCATTTCAATTCCTCATAGATAGGCTAAAAACAAACTACTTCTTACTTTTTCTGGTGTGTTATCAGAATTTCAATTCCTCATAGATAGGCTAAAAACTAAAGATTGATCACGATGGTGAAGCAATTATAAAGTTATTTCAATTCCTCATAGATAGGCTAAAAACCGCACCGGACGGGAGTATGCGTGCTTATAGGGTGATTTATTTCAATTCCTCATAGATAGGCTAAAAACGGATTTGGGCCTAATAGTGAAGGCACTTATGTTGTACCATATTTCAATTCCTCATAGATAGGCTAAAAACAAAGTTATCGGAATTCTTACCCCCGTATTTAATACAGATTTCAATTCCTCATAGATAGGCTAAAAACCGATAAAGCCCGTGAACGTGGAGAAGAAAAACCTAATTTCAATTCCTCATAGATAGGCTAAAAACGGCGGAGGAGTGTATGTGAGAGTAACGGCCAATGAGTATTTCAATTCCTCATAGATAGGCTAAAAAC

>NC_013216|14|12|4451140-4452435|PILER-CR
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	CGAGATAGAATTGGCTGAGGAGATAGATGAACTAA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	GTCCGGTGGGGGATTCGTTTTTCTTTACATAGTTTACG
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	TTCGCCTTTTAAGGTATTGGCTAGTGGGTGATCTGCAT
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	ATGAAAAGGTTAAGCAGTTTATGCAGTTTTTGGGAA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	TCGTGAAAAAGGATTGTTACCTACATCAGTTATCGA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	CCACCTATTCCTGAATATATTCCACAACCTACCATTA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CTTTTTTAGCCCAGCACCTACGGGCAAAAAACTCAA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGTTGAAGCAGTTACTAATATTATCAAGCAGTTCAA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CACAATTAGACCAATTTGAGAAGGGACGGGATAGGA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GCTGCTTGCGTAGTTTACTTACCCTGTCCTCTGTC
ATTTCAATTCCTCATAGATAGGCTAAAAAC	TACAAGAGCTAAAGCTCGTTTAATAGCTCGTACTGAGG
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GTATTTAGGCCAAAGCTTGCTTTTTACTAAATTAGC
ATTTCAATTCCTCATAGATAGGCTAAAAAC	AAACTACTTCTTACTTTTTCTGGTGTGTTATCAGA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	TAAAGATTGATCACGATGGTGAAGCAATTATAAAGTT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CGCACCGGACGGGAGTATGCGTGCTTATAGGGTGATTT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGATTTGGGCCTAATAGTGAAGGCACTTATGTTGTACCAT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	AAAGTTATCGGAATTCTTACCCCCGTATTTAATACAG
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CGATAAAGCCCGTGAACGTGGAGAAGAAAAACCTA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGCGGAGGAGTGTATGTGAGAGTAACGGCCAATGAGT
ATTTCAATTCCTCATAGATAGGCTAAAAAC

>NC_013216|14|13|4451140-4452435|CRISPRCasFinder
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	CGAGATAGAATTGGCTGAGGAGATAGATGAACTAA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	GTCCGGTGGGGGATTCGTTTTTCTTTACATAGTTTACG
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	TTCGCCTTTTAAGGTATTGGCTAGTGGGTGATCTGCAT
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	ATGAAAAGGTTAAGCAGTTTATGCAGTTTTTGGGAA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	TCGTGAAAAAGGATTGTTACCTACATCAGTTATCGA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	CCACCTATTCCTGAATATATTCCACAACCTACCATTA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CTTTTTTAGCCCAGCACCTACGGGCAAAAAACTCAA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGTTGAAGCAGTTACTAATATTATCAAGCAGTTCAA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CACAATTAGACCAATTTGAGAAGGGACGGGATAGGA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GCTGCTTGCGTAGTTTACTTACCCTGTCCTCTGTC
ATTTCAATTCCTCATAGATAGGCTAAAAAC	TACAAGAGCTAAAGCTCGTTTAATAGCTCGTACTGAGG
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GTATTTAGGCCAAAGCTTGCTTTTTACTAAATTAGC
ATTTCAATTCCTCATAGATAGGCTAAAAAC	AAACTACTTCTTACTTTTTCTGGTGTGTTATCAGA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	TAAAGATTGATCACGATGGTGAAGCAATTATAAAGTT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CGCACCGGACGGGAGTATGCGTGCTTATAGGGTGATTT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGATTTGGGCCTAATAGTGAAGGCACTTATGTTGTACCAT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	AAAGTTATCGGAATTCTTACCCCCGTATTTAATACAG
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CGATAAAGCCCGTGAACGTGGAGAAGAAAAACCTA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGCGGAGGAGTGTATGTGAGAGTAACGGCCAATGAGT
ATTTCAATTCCTCATAGATAGGCTAAAAAC

>NC_013216|14|11|4451140-4452435|CRT
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	CGAGATAGAATTGGCTGAGGAGATAGATGAACTAA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	GTCCGGTGGGGGATTCGTTTTTCTTTACATAGTTTACG
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	TTCGCCTTTTAAGGTATTGGCTAGTGGGTGATCTGCAT
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	ATGAAAAGGTTAAGCAGTTTATGCAGTTTTTGGGAA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	TCGTGAAAAAGGATTGTTACCTACATCAGTTATCGA
ATTTCAATTCCTCATAGGTAGGCTAAAAAC	CCACCTATTCCTGAATATATTCCACAACCTACCATTA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CTTTTTTAGCCCAGCACCTACGGGCAAAAAACTCAA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGTTGAAGCAGTTACTAATATTATCAAGCAGTTCAA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CACAATTAGACCAATTTGAGAAGGGACGGGATAGGA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GCTGCTTGCGTAGTTTACTTACCCTGTCCTCTGTC
ATTTCAATTCCTCATAGATAGGCTAAAAAC	TACAAGAGCTAAAGCTCGTTTAATAGCTCGTACTGAGG
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GTATTTAGGCCAAAGCTTGCTTTTTACTAAATTAGC
ATTTCAATTCCTCATAGATAGGCTAAAAAC	AAACTACTTCTTACTTTTTCTGGTGTGTTATCAGA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	TAAAGATTGATCACGATGGTGAAGCAATTATAAAGTT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CGCACCGGACGGGAGTATGCGTGCTTATAGGGTGATTT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGATTTGGGCCTAATAGTGAAGGCACTTATGTTGTACCAT
ATTTCAATTCCTCATAGATAGGCTAAAAAC	AAAGTTATCGGAATTCTTACCCCCGTATTTAATACAG
ATTTCAATTCCTCATAGATAGGCTAAAAAC	CGATAAAGCCCGTGAACGTGGAGAAGAAAAACCTA
ATTTCAATTCCTCATAGATAGGCTAAAAAC	GGCGGAGGAGTGTATGTGAGAGTAACGGCCAATGAGT
ATTTCAATTCCTCATAGATAGGCTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013216.1\|WP_015759614.1\|4442230_4443259_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NC_013216.1\|WP_015759617.1\|4447226_4447352_-\|mycofactocin-precursor	unknown	unknown	gnl\|CDD\|274887
NC_013216.1\|WP_015759613.1\|4440939_4442244_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NC_013216.1\|WP_015759623.1\|4452914_4453907_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_013216.1\|WP_015759625.1\|4454486_4456997_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_013216.1\|WP_015759630.1\|4462369_4462642_-\|hypothetical-protein	unknown	unknown	unknown
NC_013216.1\|WP_015759620.1\|4449519_4450533_-\|permease	unknown	unknown	gnl\|CDD\|223773
NC_013216.1\|WP_015759624.1\|4453922_4454432_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_013216.1\|WP_015759622.1\|4452617_4452881_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013216.1\|WP_015759626.1\|4457065_4457827_-\|CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NC_013216.1\|WP_015759618.1\|4447691_4448921_-\|Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379073
NC_013216.1\|WP_015759628.1\|4458916_4460983_-\|CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|378190
NC_013216.1\|WP_015759621.1\|4450625_4450940_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_013216.1\|WP_015759612.1\|4440673_4440946_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|225289
NC_013216.1\|WP_015759615.1\|4443258_4445244_-\|mycofactocin-system-FadH/OYE-family-oxidoreductase-2	unknown	unknown	gnl\|CDD\|274912
NC_013216.1\|WP_015759616.1\|4445256_4447200_-\|mycofactocin-system-FadH/OYE-family-oxidoreductase-2	unknown	unknown	gnl\|CDD\|274912
NC_013216.1\|WP_015759627.1\|4457830_4458901_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_013216.1\|WP_015759631.1\|4462794_4463103_-\|rubrerythrin	unknown	unknown	gnl\|CDD\|275328
NC_013216.1\|WP_174260370.1\|4461310_4461979_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_013216.1\|WP_015759619.1\|4449154_4449505_-\|TM0996/MTH895-family-glutaredoxin-like-protein	unknown	unknown	gnl\|CDD\|379063

Protein	Function_ID	Function_description	E-value
NC_013216.1\|WP_015759614.1\|4442230_4443259_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.24303e-87
NC_013216.1\|WP_015759617.1\|4447226_4447352_-\|mycofactocin-precursor	gnl\|CDD\|274887	TIGR03969, conserved_hypothetical_protein, mycofactocin precursor. Members of this protein family occur in Mycobacterium tuberculosis and many other Actinobacteria, as well as some delta-Proteobacteria (e.g. Geobacter uraniireducens), Firmicutes (Pelotomaculum thermopropionicum and Desulfotomaculum acetoxidans), and Chloroflexi (Thermomicrobium roseum DSM 5159 and Sphaerobacter thermophilus DSM 20745). Members sometimes are missed during gene model identification but always occur in the vicinity of radical SAM (rSAM) enzyme TIGR03962, which resembles several rSAM enzymes of peptide maturation (PqqE, AlbA). Species with this protein always carry members of unusual clades of nicotinoproteins that are restricted to mycofactocin-containing species and in which the NAD, when studied, has appeared non-exchangeable. It is proposed that the mature form of mycofactocin is a novel redox carrier for a segregated redox pool.	6.24532e-06
NC_013216.1\|WP_015759613.1\|4440939_4442244_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	1.72375e-110
NC_013216.1\|WP_015759623.1\|4452914_4453907_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.77069e-172
NC_013216.1\|WP_015759625.1\|4454486_4456997_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.07134e-50
NC_013216.1\|WP_015759620.1\|4449519_4450533_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	6.88185e-59
NC_013216.1\|WP_015759624.1\|4453922_4454432_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.28131e-66
NC_013216.1\|WP_015759622.1\|4452617_4452881_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.49553e-31
NC_013216.1\|WP_015759626.1\|4457065_4457827_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.28227e-20
NC_013216.1\|WP_015759618.1\|4447691_4448921_-\|Ig-like-domain-containing-protein	gnl\|CDD\|379073	pfam13205, Big_5, Bacterial Ig-like domain.	2.87249e-16
NC_013216.1\|WP_015759628.1\|4458916_4460983_-\|CRISPR-associated-protein	gnl\|CDD\|378190	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This minor cas protein is found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	3.2107e-41
NC_013216.1\|WP_015759621.1\|4450625_4450940_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.27845e-20
NC_013216.1\|WP_015759612.1\|4440673_4440946_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	2.04543e-25
NC_013216.1\|WP_015759615.1\|4443258_4445244_-\|mycofactocin-system-FadH/OYE-family-oxidoreductase-2	gnl\|CDD\|274912	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2. The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown.	0
NC_013216.1\|WP_015759616.1\|4445256_4447200_-\|mycofactocin-system-FadH/OYE-family-oxidoreductase-2	gnl\|CDD\|274912	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2. The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown.	0
NC_013216.1\|WP_015759627.1\|4457830_4458901_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.2575e-45
NC_013216.1\|WP_015759631.1\|4462794_4463103_-\|rubrerythrin	gnl\|CDD\|275328	TIGR04535, conserved_hypothetical_protein, ferritin-like protein. Two families of proteins are known to be encoded, with some regularity, next to the gene for encapsulin (pfam04454), with surrounds the target protein to form a prokaryotic proteinaceous organelle. One is the family of enzymes that includes Dyp-type peroxidases. The other is this family, with a resemblance to bacterioferritins. Encapsulin-associated forms of the proteins in these two families have a necessary C-terminal motif that resembles DGSL[SGN]IGSL[KR]. Members of this family that include the last columns of the model in the hit region (and are encoded next to the encapsulin gene) should be designated encapsulin-associated ferritin-like protein.	5.6075e-22
NC_013216.1\|WP_174260370.1\|4461310_4461979_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.70834e-36
NC_013216.1\|WP_015759619.1\|4449154_4449505_-\|TM0996/MTH895-family-glutaredoxin-like-protein	gnl\|CDD\|379063	pfam13192, Thioredoxin_3, Thioredoxin domain.	1.98209e-25

>NC_013216.1|WP_015759621.1|4450625_4450940_-|winged-helix-turn-helix-transcriptional-regulator
MATVYEEHAKVFKAFCDDKRLRILELLRGGEKCACVLIEQMDMGQSALSYHMKILVESGVVESRQEGKWTHYKISEKGGACAVNLLKKLTTPNTVVEDDNCCKN
>NC_013216.1|WP_015759620.1|4449519_4450533_-|permease
MQIIKAIWDFFQGQILGMKWLNSLIGEGLSALGLDNANRWVGGLQFFIYDVIKITVLLCFLIFFISYIQSYFPPERSKKILGHFHGIGANCVAALLGTVTPFCSCSSIPLFIGFTSAGLSLGVTFSFLISSPMVDLGSLFLLMSIFGAKIAIIYVVLGLIIAVTGGTLIEKLHMEKHIESFILTAGGVDITLPDLSKKDRLIYAKEQVLSTFKKVFPYILLGVGIGAVIHNWIPEEWVTTALGSKNPFGVVLATLIGVPMYADIFGTIPVAEALWYKGAQLGVILSFMMAVTTLSLPSIIMLRKAVKPKLLALFIGICIVGIIIVGYLFNVLIALIV
>NC_013216.1|WP_015759619.1|4449154_4449505_-|TM0996/MTH895-family-glutaredoxin-like-protein
MSLFNFGKKKKEASSCCCGGSCDAESMAKAENAKTQGAIVKVLGSGCAKCNQLEAATKAALEQLGMDTVIDHVTDFSQIAAYGVLTTPALVVDGKVVSCGKVLKTEEVIKILQKVK
>NC_013216.1|WP_015759618.1|4447691_4448921_-|Ig-like-domain-containing-protein
MWKKKLFISTMTIGLLAVGIGMNISNANADTGRGNYLQTTGLQAKVLNQNQSQMTQPQFMMHFLDMQQKNMQQNNMQQNNMRQNKMRQNKMRQNDMQQNNMQQQSSGEALGRKCQIFDSEAGNILSQIADILGVEEKSIIETLQGGKTLVEIAEDNGVDEDELLEELVESQTTAINNAVSAGTITDEQADELKDKLTERLQNLIEYNTQQQFNGKFSNHQNELPGLAGDYNCSSGYDVEKGTISNMDSDSITINDNTYQINDDTKIYLDQKSADWDDISEGDSAVIFVNSSGEVAYLYVNNQNELEVESLSPSDDADNVSRYTDELEVKFNRDIEAKTSLSNVYDAITISNNIDVNTVEIDDDTLTIKLDDELDYNEEYTVTIDSGVIQAEDSSDTNDEIEWSFTTEEE
>NC_013216.1|WP_015759617.1|4447226_4447352_-|mycofactocin-precursor
MKKNNNEAVKNVDEKEGKQDIEIIEEIQIEELSIDGICGVY
>NC_013216.1|WP_015759616.1|4445256_4447200_-|mycofactocin-system-FadH/OYE-family-oxidoreductase-2
MTVCAKLFSPLKIGKHILNNRIIFGPHRTNFAVQNLPSKQHVNYYERRAKGGVGLTIIEGGCIHPSDYPYERAIFAYRKAVTDGYGQIAEAVHKHGCLAVAQLNHSGGQADSSLSRRETWAPSAVPEISSGEVPKIMEREDIKEVIEGFVNAAWRLKNSGLDGIEINAGQFSLLRQFLSPLTNYRSDDYGGSLENRVRFCREVLQEVRRATGSDFLIGLRLCGDEYAPWGGLNPEDCRDIARHLCKGGLVDWFTVETGSIYSLHMTSASMRHPEDYAAQPACLIAEAVDIPVCATGSIVSVKLAEKLLNEGVQLAEMTRALIADPDLPARAKEDETNIRPCILCNQDCYVNSVMNPVLSCAVNPFAGEELKETYTVSPAGFKKVLVAGAGPAGLEAAITAARRGHRVVLYERDSEPGGRLKLAARIPGCGKFQSIIDYLYRCVREIGIEIHLGSNADDSVIAAESPDAVVVATGSRPSPVPFAVGAGITFIRPEELLAGNRKVGSRVMIIDLEGAWQAPGVALSLAGEVEKISIITPEMFVSPELAKNGEFLYWYQQAFQKNIEFIPQTEVIRVSGSCLEAVDRFSREKRMFNQIDTIVPVIPAYPDQSLYLRLLKTGIQVWVAGDCVAPRNLGAAIREGRNIGLTI
>NC_013216.1|WP_015759615.1|4443258_4445244_-|mycofactocin-system-FadH/OYE-family-oxidoreductase-2
MSKQYQLLFSPIKIGNVVMPNRVVFTAHLTNLTENNLPGEKQAYYYAERAKGGAGLIITEELSVHPTDRAYEKLIDAFEEKAIPRYRFVTGLVHRYGTKIFAQLNHNGNQGCSMHTKLPVWAPSPLPDPLFREVPKEMDKYDINSLVEGYAKSAGFVKAGGFDGLEFQGSHSSILRQFLSPLTNHRRDEYGGSLENRMRLLCETAEAVRKVVGKDFIMGLRLSGDEFVDGGLTLADTVEIARGIDETGFFDYINTSVGIATRNLYLVEGNMCMPPGYSVYMSSAVRQAVKIPVIAVGRIKDPAQAEQILRDGHADMIGMVRAQIADPEFANKAFNGKAQSIRMCLSCNQDCIGRVGLNREIGCLQNPSVGKEKFWGAGTLKPAVKSKRVIVVGAGPAGMEAAKTAALLGHEVILLEKEAEPGGQVRFAAKLPYRAEFGDVIRNLLNDLKTSGVDLRLGSEADAEYILNEKPDCVIVATGSLPQRPPMPGFNQENVFTVWQLLTEDLVLGGRIIMVDQLGFHQASGAAELLADRGKKVEILTPSLYAGQGLGRSLDLELWYRRARKKGIALTPNVSVIAIDGNTVQAIHNYSGQVAVWQEVDNIILAAAHRVNDDLYFSLKGRVAKLYRIGDCLAPRRVDAAISEGHRVARNLYEPGLRRRP
>NC_013216.1|WP_015759614.1|4442230_4443259_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MGQEIWVVAEQNHADMTDLTKELLGVAKTAAQRDGIKVCAVLAGYKTEGLEKSLASYGAERVYIADHKELEHYNAKACVDTISELAKKHRPLFIICGMTFNGKDLSARLAARLKTHLFSACAALKPTDNNRFEVTGLVYNGLAMSSRIVGIDETAILGFLPKIRGLESPDDARDAELIKIETILPGDRYPRHIETVAADFREIDLTESDFVMSCGHGMCNKNSFHLIWQLAEILGATVGGSRPTVDKGWLPAERMIGMTGKTVSPELYLAFGISGAVQHIMGIKDSKYIVAINKDAQAPIMQIADLAVMGDVLEVLPALIEKIKAFALSKTRLIESEASEAI
>NC_013216.1|WP_015759613.1|4440939_4442244_-|FAD-dependent-oxidoreductase
MKQFDAIVVGGGPAGTTAALVLARAGMRVVVLERGEYPGAKNVSGAALYGTRLLERLHPGFWLDAPIERYITRKVLGFMSEHALTSIDFKSENMGLPPYNAFTVIRPKFDRWLALKAEEAGALIISGTVVDGLIKENGVIKGVRTRRDKGELYADIVIAADGVNSFLAREAGLQRELKANELSLGIKEIIALDRQTIEERFQLSGNEGVTHEFVGSVTGEATGGGFLYTNEDSLSIGVIMQVSSMLENRIRPYELLEKLKSHPSVRPLVRGGLAKEYSAHMIPEGGWKMFPKLFAPGLLVAGDAAGMVLATGYYLQGINYAMISGEAAAETAIEAIKKKEYSVSTLAKYELLLKEKHVLTDFKNFQNATDILNNRRFQNLYPEIICCSMEKLFAHGESSKQKLVGNLSSQVKDSKASWLKIALDLFEGGRALGW
>NC_013216.1|WP_015759612.1|4440673_4440946_-|4Fe-4S-dicluster-domain-containing-protein
MVNVQEKLNRLRFKIDKNSHISIDKSKCVKCQSRACLFLCPAGLFLLLEAELFHNHEGCLECGTCYISCEQKAINWNYPRGGFGVCFRQS
>NC_013216.1|WP_015759622.1|4452617_4452881_-|CRISPR-associated-endonuclease-Cas2
MFVILVYDVGVKRVNKVLKKCRAYLHWVQNSVLEGDITESNYIKLKAELSKIINTKEDSVVIYTFRLPRYNSRETLGIKKGGEENIF
>NC_013216.1|WP_015759623.1|4452914_4453907_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MEKTIYIFSSGELKRKGNTLYFETEENRKYIPVEDTGEIMIFGEVDINKKLLEFLSQKEILMHYFNYNGYYMGTFYPREHLNSGYMILKQSEYYMDEKKRLELARQFVIGAGKNIRQVLKYYNNRDCDLEDGLKRIEEIFTSMPEIITINQLMALEGNMREQYYKCFDTITQNQDFVFEERSRRPPRNYMNTLVSFGNTLMYTTVLSEIYKTHLDPRIGFLHATNFRRFSLNLDVAEIFKPIIIDRLIFSLIRKNMVTKKDFDKNTEGIMLKDKAKQVFVQQMDEKLKVTIKHRELGRHVSYRRLIRLELYKLAKHLIDEKKYEPFIANW
>NC_013216.1|WP_015759624.1|4453922_4454432_-|CRISPR-associated-protein-Cas4
MQNKEIHITGTLVWYYYICHREVWFMGRQIVPDQDNPNIDIGRFIGENAYSRESKKEIAVGNSRFDIIRNKEGHLVISEIKKSSKFKDSARMQLAFYLSELETLGITARGELLFPEEKRKETIVLDDKLRAHLEQARRDILRIMYLPVPPPAQKKSLCKNCAYAELCWA
>NC_013216.1|WP_015759625.1|4454486_4456997_-|CRISPR-associated-helicase/endonuclease-Cas3
MPYWAHYDQEKEIKQTLKEHLSSVAAMARDRVSPGVQFKDIPSSIVKELAYWMGYFHDLGKYTDYFQDYLTKNKKSKFKEHAHISACCVYSFLLDRVIDFSDDWQKKITAFLIYLCSRKHHGTLSLEGLFSISREKEIWKLLQAAEYNLLEKLPVILQDAGLSDRISGVELKKYLSVDVLIKSKSLARTGQYLNSGRGEDERWFFLAIYLFSLLIDSDKLDSGGLKPGEVKSCPSDQVSKYLNKKLEQLKDKRNVSLWERRNNARKTMLGIIEGLSDEEIKGTGFFTITAPTGIGKTLSSLQCALCLQERIKVLEKYTPRIIAAIPFINIIEQNKKEYEQVFGKELKLIVHHRLGDFSVQASSREEISVDQALLEVESWEGDVILTTFVQLFQSIITGNNRLLKKFNKLACSIVILDEAQAVPEYYMPLIGAVLQKMTEFLGTRFILMTATQPKILEFGNLLLGSSGGKAKAVPLLPDFEGYFEKLTRTKFVSLLKKNRLDTGAFLELFQEKWDGKKSVLIVVNTIKRSIEVYREIKKLLKDQACNIPVCYLSTNIMPRQRREVIKNVKDKLENKETVILVSTQTIEAGVDLDFDMAFRDFAPIDSLIQTAGRVNREGRKGEYLPVYIVQLESDNHYVYELTHRHSTMKLLQAADEIKEPQYGRLADEYYTLALARGISDRSKELWQEGIMKLNFEKLKEFQLIQNTGEVVDVFVEDCLKATQLANAYEELLRYKEYDLSCESGALSKVIDKGVIPNCNGKLSVFERKAILRLILAKVSDFIIQVRVSRLKENRPVEFRVRGDVESSMYWIPPGQKKEYYDDETGFISETGEAFIL
>NC_013216.1|WP_015759626.1|4457065_4457827_-|CRISPR-associated-protein-Cas5
MKIISFHLRGKMAHFRRYYANSSALSYSIPPRTTLIGIVAGLLGWERDKYYEIFSLNSCKVAVASCAPVKKCMQKLNLLMIKKAGDLNGSAEHHSQTATELIIPQNIRTGIIDYQVWLHHRDNKIMDMLGKLLQLEGRGYKSLGISLALGTVFNLGWVDDGCIIEGVEKEKSNDLSIASVIPVKKLIGIQTERMGADEYRLVKEEIPLEFDSQRHITERGLGNMMINLNSSPIPAGVESYVQLENGKCIMWME
>NC_013216.1|WP_015759627.1|4457830_4458901_-|type-I-CRISPR-associated-protein-Cas7
MAVINQNSDFLFVFQASMTNCNGDPDQENKPRMDYETSTVLVSDGRRKRDVRDFLKNKGYPIFVDTLADRKVPMDKMFEHVRDSWLADSKEMELLFSENQNLSEKWHMVFEEDEAGYKNAYHTKLKDIKAKKNKDSKDFIEFNNILLTEIIKRSLIDIRLFGSAMAVEGVSRTYTGPVQIAWGYSLHAVELVKSNTITSIMNDDNSTFGKKHKLYYALVAHYGTINKYSAKLTGMTEDDRELLRKSLVQGLMSNQTDSKQGQEPMFYLEIVYKPEFDGYLGDLRRFLDVTGKEPIRKVENLTVDFNKLTDALGDMKKKGYVEKVVGWRHPFARNEQFVNMPEYEVVDLWSPIPVRE
>NC_013216.1|WP_015759628.1|4458916_4460983_-|CRISPR-associated-protein
MNLPQLTACIGDSLKNANHNLLTSLIKRLKKVKETETAYSVFLIFDLEAREIRFCLNKELSESCVDKYFYFGNNSAASSQYYLARETKSLNYLLTSVLSDLYSMLGKYNMPIGELASIIKRMESSGLIQLAPKKGDGRVNLGEFSIVKGNDKLNVAFDNKALTIDGHNYGFEAVIRLFINDDNKKNRYVLVIPVVKLENGEEIILSTHPEYLELVRQANNLGDEPQTGKDGGRVCYVCGSKKSGVSSDYSAKFSRSGINKIFTTTTINTSPYLQNNNYDQIYSMCTSCYQKILHGEKIITEQFRSRIAGEDVFIIPEGLTASFNYNFLFRLKNGVDLAFNTNIANKWLDDLEGALDFDQVQLYSLNFLFYRTDGNSVSILETIEDVPTLRFVKVMRILAEKTFDMEHQLREFSIGQIYRIIPVRTNKKGEQLDIGNVLSLYKALLLGEQIRSAALINYAADALDKGMRQLSKDKADNYQNMGLRYYAGGREDFFIKRIIMSYLVLIETCQQLNILDKPVFDFNGEGANHLDKINTASEKVNSSIEAMEKFLDDRKFDKEARALFYLGVLINRVAIAQLEKEHKKKPVLKKIQFQGMKSKEVYRLYLDVLEKLQQYDRFSLFAEAVLNRLHYYGSFNHTEMLGERENVFFIMSGYAYLVGTKTPDITKGEEDIMADSIEESDHNETPIS
>NC_013216.1|WP_174260370.1|4461310_4461979_-|CRISPR-associated-endoribonuclease-Cas6
MIQSLIYDTIGDELSSFLHDFGFIEEKRSFKMFTFSRVMGKYQIMEDGQRIYFNGPVKIIISSPMVEFCNSLINQFIIQGKVRIGKNQLQVMEVRSKKVIVKENEVSFRTLSPVVAYSTLLRSDGRKYTCYFQPGESDFERLLERNLRKKYNAFYKKDAPEGEVKVRVLGQSRLAVINYKDTIIKGYSGKLQVTGPRELLQMAVDSGLGSKNSQGFGCVEIV
>NC_013216.1|WP_015759630.1|4462369_4462642_-|hypothetical-protein
MAQLPLLKLRERQRGNSTKKPEANGKTNPLAFLCALFACPENRNGRDGGARSKDLGREELIVQKFRTEVHKKASGNIRYAGEDLVEGATI
>NC_013216.1|WP_015759631.1|4462794_4463103_-|rubrerythrin
MPDFGNPFAGLTAGRKLTDNELVRAIRFMVAAEYEAIQLYMQLAESTDNKLAQEVLKDIADEERVHAGEFLRLLYELAPDEVRFYEDGAEEVEEIIESMKNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013216_9	9.2\|3327836\|18\|NC_013216\|CRT	3327836-3327853	18	NC_013216.1	3318884-3318901	0	1.0
NC_013216_9	9.2\|3327836\|18\|NC_013216\|CRT	3327836-3327853	18	NC_013216.1	3318929-3318946	0	1.0
NC_013216_9	9.14\|3328463\|18\|NC_013216\|CRT	3328463-3328480	18	NC_013216.1	3319724-3319741	0	1.0
NC_013216_9	9.16\|3328553\|18\|NC_013216\|CRT	3328553-3328570	18	NC_013216.1	3320318-3320335	0	1.0
NC_013216_9	9.16\|3328553\|18\|NC_013216\|CRT	3328553-3328570	18	NC_013216.1	3320717-3320734	0	1.0
NC_013216_9	9.16\|3328553\|18\|NC_013216\|CRT	3328553-3328570	18	NC_013216.1	3320852-3320869	0	1.0
NC_013216_9	9.19\|3328688\|18\|NC_013216\|CRT	3328688-3328705	18	NC_013216.1	3319913-3319930	0	1.0
NC_013216_9	9.19\|3328688\|18\|NC_013216\|CRT	3328688-3328705	18	NC_013216.1	3320138-3320155	0	1.0
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3320363-3320380	0	1.0
NC_013216_9	9.27\|3329048\|18\|NC_013216\|CRT	3329048-3329065	18	NC_013216.1	3320318-3320335	0	1.0
NC_013216_9	9.27\|3329048\|18\|NC_013216\|CRT	3329048-3329065	18	NC_013216.1	3320717-3320734	0	1.0
NC_013216_9	9.27\|3329048\|18\|NC_013216\|CRT	3329048-3329065	18	NC_013216.1	3320852-3320869	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319145-3319162	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319190-3319207	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319280-3319297	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319370-3319387	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319679-3319696	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3320003-3320020	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3320183-3320200	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3320672-3320689	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3321527-3321544	0	1.0
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3323147-3323164	0	1.0
NC_013216_9	9.43\|3329768\|18\|NC_013216\|CRT	3329768-3329785	18	NC_013216.1	3321257-3321274	0	1.0
NC_013216_9	9.44\|3329813\|18\|NC_013216\|CRT	3329813-3329830	18	NC_013216.1	3320318-3320335	0	1.0
NC_013216_9	9.44\|3329813\|18\|NC_013216\|CRT	3329813-3329830	18	NC_013216.1	3320717-3320734	0	1.0
NC_013216_9	9.44\|3329813\|18\|NC_013216\|CRT	3329813-3329830	18	NC_013216.1	3320852-3320869	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319145-3319162	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319190-3319207	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319280-3319297	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319370-3319387	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319679-3319696	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3320003-3320020	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3320183-3320200	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3320672-3320689	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3321527-3321544	0	1.0
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3323147-3323164	0	1.0
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3319505-3319522	0	1.0
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3320048-3320065	0	1.0
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3320093-3320110	0	1.0
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3322112-3322129	0	1.0
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3322472-3322489	0	1.0
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3322877-3322894	0	1.0
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3320273-3320290	0	1.0
NC_013216_9	9.48\|3329993\|18\|NC_013216\|CRT	3329993-3330010	18	NC_013216.1	3320537-3320554	0	1.0
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3320273-3320290	0	1.0
NC_013216_9	9.53\|3330218\|18\|NC_013216\|CRT	3330218-3330235	18	NC_013216.1	3320537-3320554	0	1.0
NC_013216_9	9.57\|3330398\|18\|NC_013216\|CRT	3330398-3330415	18	NC_013216.1	3320537-3320554	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319145-3319162	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319190-3319207	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319280-3319297	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319370-3319387	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319679-3319696	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3320003-3320020	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3320183-3320200	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3320672-3320689	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3321527-3321544	0	1.0
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3323147-3323164	0	1.0
NC_013216_9	9.59\|3330488\|18\|NC_013216\|CRT	3330488-3330505	18	NC_013216.1	3320537-3320554	0	1.0
NC_013216_9	9.60\|3330533\|18\|NC_013216\|CRT	3330533-3330550	18	NC_013216.1	3320537-3320554	0	1.0
NC_013216_9	9.62\|3330632\|18\|NC_013216\|CRT	3330632-3330649	18	NC_013216.1	3320537-3320554	0	1.0
NC_013216_9	9.63\|3330677\|18\|NC_013216\|CRT	3330677-3330694	18	NC_013216.1	3320228-3320245	0	1.0
NC_013216_9	9.64\|3330722\|18\|NC_013216\|CRT	3330722-3330739	18	NC_013216.1	3320228-3320245	0	1.0
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3319010-3319027	0	1.0
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3323282-3323299	0	1.0
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3323327-3323344	0	1.0
NC_013216_9	9.67\|3330857\|18\|NC_013216\|CRT	3330857-3330874	18	NC_013216.1	3320537-3320554	0	1.0
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3319010-3319027	0	1.0
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3323282-3323299	0	1.0
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3323327-3323344	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319145-3319162	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319190-3319207	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319280-3319297	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319370-3319387	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319679-3319696	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3320003-3320020	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3320183-3320200	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3320672-3320689	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3321527-3321544	0	1.0
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3323147-3323164	0	1.0
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3319010-3319027	0	1.0
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3323282-3323299	0	1.0
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3323327-3323344	0	1.0
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3319010-3319027	0	1.0
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3323282-3323299	0	1.0
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3323327-3323344	0	1.0
NC_013216_9	9.1\|3327791\|18\|NC_013216\|CRT	3327791-3327808	18	NC_013216.1	2025097-2025114	1	0.944
NC_013216_9	9.4\|3327944\|18\|NC_013216\|CRT	3327944-3327961	18	NC_013216.1	3320753-3320770	1	0.944
NC_013216_9	9.4\|3327944\|18\|NC_013216\|CRT	3327944-3327961	18	NC_013216.1	3323498-3323515	1	0.944
NC_013216_9	9.7\|3328088\|18\|NC_013216\|CRT	3328088-3328105	18	NC_013216.1	3319589-3319606	1	0.944
NC_013216_9	9.14\|3328463\|18\|NC_013216\|CRT	3328463-3328480	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.14\|3328463\|18\|NC_013216\|CRT	3328463-3328480	18	NC_013216.1	3320762-3320779	1	0.944
NC_013216_9	9.15\|3328508\|18\|NC_013216\|CRT	3328508-3328525	18	NC_013216.1	3319778-3319795	1	0.944
NC_013216_9	9.19\|3328688\|18\|NC_013216\|CRT	3328688-3328705	18	NC_013216.1	3321977-3321994	1	0.944
NC_013216_9	9.20\|3328733\|18\|NC_013216\|CRT	3328733-3328750	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_9	9.20\|3328733\|18\|NC_013216\|CRT	3328733-3328750	18	NC_013216.1	3323372-3323389	1	0.944
NC_013216_9	9.21\|3328778\|18\|NC_013216\|CRT	3328778-3328795	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_9	9.21\|3328778\|18\|NC_013216\|CRT	3328778-3328795	18	NC_013216.1	3323372-3323389	1	0.944
NC_013216_9	9.22\|3328823\|18\|NC_013216\|CRT	3328823-3328840	18	NC_013216.1	3319460-3319477	1	0.944
NC_013216_9	9.23\|3328868\|18\|NC_013216\|CRT	3328868-3328885	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3319100-3319117	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3319868-3319885	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3320453-3320470	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3321122-3321139	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3321392-3321409	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3321662-3321679	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3321752-3321769	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3321797-3321814	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3321932-3321949	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3322022-3322039	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3322292-3322309	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3322652-3322669	1	0.944
NC_013216_9	9.24\|3328913\|18\|NC_013216\|CRT	3328913-3328930	18	NC_013216.1	3322787-3322804	1	0.944
NC_013216_9	9.26\|3329003\|18\|NC_013216\|CRT	3329003-3329020	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_9	9.29\|3329138\|18\|NC_013216\|CRT	3329138-3329155	18	NC_013216.1	3319823-3319840	1	0.944
NC_013216_9	9.29\|3329138\|18\|NC_013216\|CRT	3329138-3329155	18	NC_013216.1	3319958-3319975	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.31\|3329228\|18\|NC_013216\|CRT	3329228-3329245	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.34\|3329363\|18\|NC_013216\|CRT	3329363-3329380	18	NC_013216.1	3320537-3320554	1	0.944
NC_013216_9	9.37\|3329498\|18\|NC_013216\|CRT	3329498-3329515	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_9	9.39\|3329588\|18\|NC_013216\|CRT	3329588-3329605	18	NC_013216.1	3320537-3320554	1	0.944
NC_013216_9	9.40\|3329633\|18\|NC_013216\|CRT	3329633-3329650	18	NC_013216.1	3319823-3319840	1	0.944
NC_013216_9	9.40\|3329633\|18\|NC_013216\|CRT	3329633-3329650	18	NC_013216.1	3319958-3319975	1	0.944
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319010-3319027	1	0.944
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319460-3319477	1	0.944
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3319589-3319606	1	0.944
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3323282-3323299	1	0.944
NC_013216_9	9.42\|3329723\|18\|NC_013216\|CRT	3329723-3329740	18	NC_013216.1	3323327-3323344	1	0.944
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319010-3319027	1	0.944
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319460-3319477	1	0.944
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3319589-3319606	1	0.944
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3323282-3323299	1	0.944
NC_013216_9	9.45\|3329858\|18\|NC_013216\|CRT	3329858-3329875	18	NC_013216.1	3323327-3323344	1	0.944
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3320273-3320290	1	0.944
NC_013216_9	9.46\|3329903\|18\|NC_013216\|CRT	3329903-3329920	18	NC_013216.1	3320408-3320425	1	0.944
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3319505-3319522	1	0.944
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3320048-3320065	1	0.944
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3320093-3320110	1	0.944
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3320408-3320425	1	0.944
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3322112-3322129	1	0.944
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3322472-3322489	1	0.944
NC_013216_9	9.47\|3329948\|18\|NC_013216\|CRT	3329948-3329965	18	NC_013216.1	3322877-3322894	1	0.944
NC_013216_9	9.48\|3329993\|18\|NC_013216\|CRT	3329993-3330010	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3319505-3319522	1	0.944
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3320048-3320065	1	0.944
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3320093-3320110	1	0.944
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3320408-3320425	1	0.944
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3322112-3322129	1	0.944
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3322472-3322489	1	0.944
NC_013216_9	9.49\|3330038\|18\|NC_013216\|CRT	3330038-3330055	18	NC_013216.1	3322877-3322894	1	0.944
NC_013216_9	9.50\|3330083\|18\|NC_013216\|CRT	3330083-3330100	18	NC_013216.1	3320318-3320335	1	0.944
NC_013216_9	9.50\|3330083\|18\|NC_013216\|CRT	3330083-3330100	18	NC_013216.1	3320717-3320734	1	0.944
NC_013216_9	9.50\|3330083\|18\|NC_013216\|CRT	3330083-3330100	18	NC_013216.1	3320852-3320869	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.51\|3330128\|18\|NC_013216\|CRT	3330128-3330145	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.53\|3330218\|18\|NC_013216\|CRT	3330218-3330235	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.55\|3330308\|18\|NC_013216\|CRT	3330308-3330325	18	NC_013216.1	3323372-3323389	1	0.944
NC_013216_9	9.56\|3330353\|18\|NC_013216\|CRT	3330353-3330370	18	NC_013216.1	3322922-3322939	1	0.944
NC_013216_9	9.57\|3330398\|18\|NC_013216\|CRT	3330398-3330415	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319010-3319027	1	0.944
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319460-3319477	1	0.944
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3319589-3319606	1	0.944
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3323282-3323299	1	0.944
NC_013216_9	9.58\|3330443\|18\|NC_013216\|CRT	3330443-3330460	18	NC_013216.1	3323327-3323344	1	0.944
NC_013216_9	9.59\|3330488\|18\|NC_013216\|CRT	3330488-3330505	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.60\|3330533\|18\|NC_013216\|CRT	3330533-3330550	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.62\|3330632\|18\|NC_013216\|CRT	3330632-3330649	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.63\|3330677\|18\|NC_013216\|CRT	3330677-3330694	18	NC_013216.1	3319724-3319741	1	0.944
NC_013216_9	9.63\|3330677\|18\|NC_013216\|CRT	3330677-3330694	18	NC_013216.1	3320537-3320554	1	0.944
NC_013216_9	9.64\|3330722\|18\|NC_013216\|CRT	3330722-3330739	18	NC_013216.1	3319724-3319741	1	0.944
NC_013216_9	9.64\|3330722\|18\|NC_013216\|CRT	3330722-3330739	18	NC_013216.1	3320537-3320554	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3320897-3320914	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3322967-3322984	1	0.944
NC_013216_9	9.66\|3330812\|18\|NC_013216\|CRT	3330812-3330829	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.67\|3330857\|18\|NC_013216\|CRT	3330857-3330874	18	NC_013216.1	3320228-3320245	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.68\|3330902\|18\|NC_013216\|CRT	3330902-3330919	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.70\|3330992\|18\|NC_013216\|CRT	3330992-3331009	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_9	9.70\|3330992\|18\|NC_013216\|CRT	3330992-3331009	18	NC_013216.1	3323372-3323389	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3320897-3320914	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3322967-3322984	1	0.944
NC_013216_9	9.71\|3331037\|18\|NC_013216\|CRT	3331037-3331054	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319010-3319027	1	0.944
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319460-3319477	1	0.944
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3319589-3319606	1	0.944
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3323282-3323299	1	0.944
NC_013216_9	9.72\|3331082\|18\|NC_013216\|CRT	3331082-3331099	18	NC_013216.1	3323327-3323344	1	0.944
NC_013216_9	9.73\|3331127\|18\|NC_013216\|CRT	3331127-3331144	18	NC_013216.1	3319325-3319342	1	0.944
NC_013216_9	9.73\|3331127\|18\|NC_013216\|CRT	3331127-3331144	18	NC_013216.1	3319415-3319432	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3320897-3320914	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3322967-3322984	1	0.944
NC_013216_9	9.74\|3331172\|18\|NC_013216\|CRT	3331172-3331189	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3320897-3320914	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3322967-3322984	1	0.944
NC_013216_9	9.75\|3331217\|18\|NC_013216\|CRT	3331217-3331234	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.76\|3331262\|18\|NC_013216\|CRT	3331262-3331279	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_9	9.76\|3331262\|18\|NC_013216\|CRT	3331262-3331279	18	NC_013216.1	3323372-3323389	1	0.944
NC_013216_9	9.77\|3331307\|18\|NC_013216\|CRT	3331307-3331324	18	NC_013216.1	3322922-3322939	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.79\|3331397\|18\|NC_013216\|CRT	3331397-3331414	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3319145-3319162	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3319190-3319207	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3319280-3319297	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3319370-3319387	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3319679-3319696	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3320003-3320020	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3320183-3320200	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3320672-3320689	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3321527-3321544	1	0.944
NC_013216_9	9.80\|3331442\|18\|NC_013216\|CRT	3331442-3331459	18	NC_013216.1	3323147-3323164	1	0.944
NC_013216_9	9.81\|3331487\|18\|NC_013216\|CRT	3331487-3331504	18	NC_013216.1	3321077-3321094	1	0.944
NC_013216_8	8.2\|3190028\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3190028-3190064	37	NC_013216.1	4393160-4393196	2	0.946
NC_013216_8	8.3\|3190095\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3190095-3190131	37	NC_013216.1	4393160-4393196	2	0.946
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	NC_013216.1	3323408-3323434	2	0.926
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	NC_013216.1	3323453-3323479	2	0.926

1. spacer 9.2|3327836|18|NC_013216|CRT matches to position: 3318884-3318901, mismatch: 0, identity: 1.0

aacaggtaaaacaggagc	CRISPR spacer
aacaggtaaaacaggagc	Protospacer
******************

2. spacer 9.2|3327836|18|NC_013216|CRT matches to position: 3318929-3318946, mismatch: 0, identity: 1.0

aacaggtaaaacaggagc	CRISPR spacer
aacaggtaaaacaggagc	Protospacer
******************

3. spacer 9.14|3328463|18|NC_013216|CRT matches to position: 3319724-3319741, mismatch: 0, identity: 1.0

tactggcacttctggtgc	CRISPR spacer
tactggcacttctggtgc	Protospacer
******************

4. spacer 9.16|3328553|18|NC_013216|CRT matches to position: 3320318-3320335, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

5. spacer 9.16|3328553|18|NC_013216|CRT matches to position: 3320717-3320734, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

6. spacer 9.16|3328553|18|NC_013216|CRT matches to position: 3320852-3320869, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

7. spacer 9.19|3328688|18|NC_013216|CRT matches to position: 3319913-3319930, mismatch: 0, identity: 1.0

taccggtactgcaggagc	CRISPR spacer
taccggtactgcaggagc	Protospacer
******************

8. spacer 9.19|3328688|18|NC_013216|CRT matches to position: 3320138-3320155, mismatch: 0, identity: 1.0

taccggtactgcaggagc	CRISPR spacer
taccggtactgcaggagc	Protospacer
******************

9. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3320363-3320380, mismatch: 0, identity: 1.0

cactggcactgcaggtgc	CRISPR spacer
cactggcactgcaggtgc	Protospacer
******************

10. spacer 9.27|3329048|18|NC_013216|CRT matches to position: 3320318-3320335, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

11. spacer 9.27|3329048|18|NC_013216|CRT matches to position: 3320717-3320734, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

12. spacer 9.27|3329048|18|NC_013216|CRT matches to position: 3320852-3320869, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

13. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

14. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

15. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

16. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

17. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

18. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

19. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

20. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

21. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

22. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

23. spacer 9.43|3329768|18|NC_013216|CRT matches to position: 3321257-3321274, mismatch: 0, identity: 1.0

gactggcactgctggtac	CRISPR spacer
gactggcactgctggtac	Protospacer
******************

24. spacer 9.44|3329813|18|NC_013216|CRT matches to position: 3320318-3320335, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

25. spacer 9.44|3329813|18|NC_013216|CRT matches to position: 3320717-3320734, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

26. spacer 9.44|3329813|18|NC_013216|CRT matches to position: 3320852-3320869, mismatch: 0, identity: 1.0

taccggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
******************

27. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

28. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

29. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

30. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

31. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

32. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

33. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

34. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

35. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

36. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

37. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3319505-3319522, mismatch: 0, identity: 1.0

cactggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
******************

38. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3320048-3320065, mismatch: 0, identity: 1.0

cactggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
******************

39. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3320093-3320110, mismatch: 0, identity: 1.0

cactggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
******************

40. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3322112-3322129, mismatch: 0, identity: 1.0

cactggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
******************

41. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3322472-3322489, mismatch: 0, identity: 1.0

cactggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
******************

42. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3322877-3322894, mismatch: 0, identity: 1.0

cactggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
******************

43. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3320273-3320290, mismatch: 0, identity: 1.0

caccggcactgctggtac	CRISPR spacer
caccggcactgctggtac	Protospacer
******************

44. spacer 9.48|3329993|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 0, identity: 1.0

tactggtactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******************

45. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3320273-3320290, mismatch: 0, identity: 1.0

caccggcactgctggtac	CRISPR spacer
caccggcactgctggtac	Protospacer
******************

46. spacer 9.53|3330218|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 0, identity: 1.0

tactggtactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******************

47. spacer 9.57|3330398|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 0, identity: 1.0

tactggtactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******************

48. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

49. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

50. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

51. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

52. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

53. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

54. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

55. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

56. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

57. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

58. spacer 9.59|3330488|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 0, identity: 1.0

tactggtactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******************

59. spacer 9.60|3330533|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 0, identity: 1.0

tactggtactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******************

60. spacer 9.62|3330632|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 0, identity: 1.0

tactggtactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******************

61. spacer 9.63|3330677|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 0, identity: 1.0

tactggcactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******************

62. spacer 9.64|3330722|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 0, identity: 1.0

tactggcactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******************

63. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

64. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

65. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

66. spacer 9.67|3330857|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 0, identity: 1.0

tactggtactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******************

67. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

68. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

69. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

70. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

71. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

72. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

73. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

74. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

75. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

76. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

77. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

78. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

79. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 0, identity: 1.0

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
******************

80. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

81. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

82. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

83. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

84. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

85. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 0, identity: 1.0

gaccggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
******************

86. spacer 9.1|3327791|18|NC_013216|CRT matches to position: 2025097-2025114, mismatch: 1, identity: 0.944

aacaggtaaaaccggtaa	CRISPR spacer
aacaagtaaaaccggtaa	Protospacer
****.*************

87. spacer 9.4|3327944|18|NC_013216|CRT matches to position: 3320753-3320770, mismatch: 1, identity: 0.944

cacgggtcctacaggcac	CRISPR spacer
cacgggtcctaccggcac	Protospacer
************ *****

88. spacer 9.4|3327944|18|NC_013216|CRT matches to position: 3323498-3323515, mismatch: 1, identity: 0.944

cacgggtcctacaggcac	CRISPR spacer
cacaggtcctacaggcac	Protospacer
***.**************

89. spacer 9.7|3328088|18|NC_013216|CRT matches to position: 3319589-3319606, mismatch: 1, identity: 0.944

gactggcattgcgggtgc	CRISPR spacer
gactggcattgctggtgc	Protospacer
************ *****

90. spacer 9.14|3328463|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggcacttctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
********** *******

91. spacer 9.14|3328463|18|NC_013216|CRT matches to position: 3320762-3320779, mismatch: 1, identity: 0.944

tactggcacttctggtgc	CRISPR spacer
taccggcacttctggtgc	Protospacer
***.**************

92. spacer 9.15|3328508|18|NC_013216|CRT matches to position: 3319778-3319795, mismatch: 1, identity: 0.944

caccggcacttctggtgc	CRISPR spacer
caccggcactgctggtgc	Protospacer
********** *******

93. spacer 9.19|3328688|18|NC_013216|CRT matches to position: 3321977-3321994, mismatch: 1, identity: 0.944

taccggtactgcaggagc	CRISPR spacer
taccggtactgctggagc	Protospacer
************ *****

94. spacer 9.20|3328733|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gaccggtactgcaggagc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
*************** **

95. spacer 9.20|3328733|18|NC_013216|CRT matches to position: 3323372-3323389, mismatch: 1, identity: 0.944

gaccggtactgcaggagc	CRISPR spacer
gacaggtactgcaggagc	Protospacer
*** **************

96. spacer 9.21|3328778|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gaccggtactgcaggagc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
*************** **

97. spacer 9.21|3328778|18|NC_013216|CRT matches to position: 3323372-3323389, mismatch: 1, identity: 0.944

gaccggtactgcaggagc	CRISPR spacer
gacaggtactgcaggagc	Protospacer
*** **************

98. spacer 9.22|3328823|18|NC_013216|CRT matches to position: 3319460-3319477, mismatch: 1, identity: 0.944

gactggcactgcaggagc	CRISPR spacer
gactggcactgctggagc	Protospacer
************ *****

99. spacer 9.23|3328868|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gactggtactgcaggtgc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
***.**************

100. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3319100-3319117, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

101. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3319868-3319885, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

102. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3320453-3320470, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

103. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3321122-3321139, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

104. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3321392-3321409, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

105. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3321662-3321679, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

106. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3321752-3321769, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

107. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3321797-3321814, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

108. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3321932-3321949, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

109. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3322022-3322039, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

110. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3322292-3322309, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

111. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3322652-3322669, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgctggtgc	Protospacer
************ *****

112. spacer 9.24|3328913|18|NC_013216|CRT matches to position: 3322787-3322804, mismatch: 1, identity: 0.944

cactggcactgcaggtgc	CRISPR spacer
cactggcactgcgggtgc	Protospacer
************.*****

113. spacer 9.26|3329003|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gaccggtactgcgggtgc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
************.*****

114. spacer 9.29|3329138|18|NC_013216|CRT matches to position: 3319823-3319840, mismatch: 1, identity: 0.944

cacgggcactgcgggagt	CRISPR spacer
cacgggcactgctggagt	Protospacer
************ *****

115. spacer 9.29|3329138|18|NC_013216|CRT matches to position: 3319958-3319975, mismatch: 1, identity: 0.944

cacgggcactgcgggagt	CRISPR spacer
cacgggcactgctggagt	Protospacer
************ *****

116. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

117. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

118. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

119. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

120. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

121. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

122. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

123. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

124. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

125. spacer 9.31|3329228|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gactggcactgctgctgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************** ***

126. spacer 9.34|3329363|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 1, identity: 0.944

tactggtactgcgggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
************ *****

127. spacer 9.37|3329498|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gaccggtactgcgggtgc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
************.*****

128. spacer 9.39|3329588|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 1, identity: 0.944

tactggtactgcgggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
************ *****

129. spacer 9.40|3329633|18|NC_013216|CRT matches to position: 3319823-3319840, mismatch: 1, identity: 0.944

cacgggcactgcgggagt	CRISPR spacer
cacgggcactgctggagt	Protospacer
************ *****

130. spacer 9.40|3329633|18|NC_013216|CRT matches to position: 3319958-3319975, mismatch: 1, identity: 0.944

cacgggcactgcgggagt	CRISPR spacer
cacgggcactgctggagt	Protospacer
************ *****

131. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

132. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319460-3319477, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggagc	Protospacer
*************** **

133. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3319589-3319606, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcattgctggtgc	Protospacer
********.*********

134. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

135. spacer 9.42|3329723|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

136. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

137. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319460-3319477, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggagc	Protospacer
*************** **

138. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3319589-3319606, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcattgctggtgc	Protospacer
********.*********

139. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

140. spacer 9.45|3329858|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

141. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3320273-3320290, mismatch: 1, identity: 0.944

cactggcactgctggtac	CRISPR spacer
caccggcactgctggtac	Protospacer
***.**************

142. spacer 9.46|3329903|18|NC_013216|CRT matches to position: 3320408-3320425, mismatch: 1, identity: 0.944

cactggcactgctggtac	CRISPR spacer
cacgggcactgctggtac	Protospacer
*** **************

143. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3319505-3319522, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

144. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3320048-3320065, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

145. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3320093-3320110, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

146. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3320408-3320425, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cacgggcactgctggtac	Protospacer
*** **************

147. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3322112-3322129, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

148. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3322472-3322489, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

149. spacer 9.47|3329948|18|NC_013216|CRT matches to position: 3322877-3322894, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

150. spacer 9.48|3329993|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggtactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******.***********

151. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3319505-3319522, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

152. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3320048-3320065, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

153. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3320093-3320110, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

154. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3320408-3320425, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cacgggcactgctggtac	Protospacer
*** **************

155. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3322112-3322129, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

156. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3322472-3322489, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

157. spacer 9.49|3330038|18|NC_013216|CRT matches to position: 3322877-3322894, mismatch: 1, identity: 0.944

caccggcactgctggtac	CRISPR spacer
cactggcactgctggtac	Protospacer
***.**************

158. spacer 9.50|3330083|18|NC_013216|CRT matches to position: 3320318-3320335, mismatch: 1, identity: 0.944

tacaggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
*** **************

159. spacer 9.50|3330083|18|NC_013216|CRT matches to position: 3320717-3320734, mismatch: 1, identity: 0.944

tacaggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
*** **************

160. spacer 9.50|3330083|18|NC_013216|CRT matches to position: 3320852-3320869, mismatch: 1, identity: 0.944

tacaggtactgcaggagt	CRISPR spacer
taccggtactgcaggagt	Protospacer
*** **************

161. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

162. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

163. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

164. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

165. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

166. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

167. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

168. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

169. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

170. spacer 9.51|3330128|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gactggcacttctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
********** *******

171. spacer 9.53|3330218|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggtactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******.***********

172. spacer 9.55|3330308|18|NC_013216|CRT matches to position: 3323372-3323389, mismatch: 1, identity: 0.944

gactggtactgcaggagc	CRISPR spacer
gacaggtactgcaggagc	Protospacer
*** **************

173. spacer 9.56|3330353|18|NC_013216|CRT matches to position: 3322922-3322939, mismatch: 1, identity: 0.944

aactggcactgctggtgc	CRISPR spacer
aaccggcactgctggtgc	Protospacer
***.**************

174. spacer 9.57|3330398|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggtactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******.***********

175. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

176. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319460-3319477, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggagc	Protospacer
*************** **

177. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3319589-3319606, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcattgctggtgc	Protospacer
********.*********

178. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

179. spacer 9.58|3330443|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

180. spacer 9.59|3330488|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggtactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******.***********

181. spacer 9.60|3330533|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggtactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******.***********

182. spacer 9.62|3330632|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggtactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******.***********

183. spacer 9.63|3330677|18|NC_013216|CRT matches to position: 3319724-3319741, mismatch: 1, identity: 0.944

tactggcactgctggtgc	CRISPR spacer
tactggcacttctggtgc	Protospacer
********** *******

184. spacer 9.63|3330677|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 1, identity: 0.944

tactggcactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******.***********

185. spacer 9.64|3330722|18|NC_013216|CRT matches to position: 3319724-3319741, mismatch: 1, identity: 0.944

tactggcactgctggtgc	CRISPR spacer
tactggcacttctggtgc	Protospacer
********** *******

186. spacer 9.64|3330722|18|NC_013216|CRT matches to position: 3320537-3320554, mismatch: 1, identity: 0.944

tactggcactgctggtgc	CRISPR spacer
tactggtactgctggtgc	Protospacer
******.***********

187. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

188. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

189. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

190. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

191. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

192. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

193. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

194. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

195. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3320897-3320914, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcattgctggtgc	Protospacer
********.*********

196. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

197. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3322967-3322984, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcgctgctggtgc	Protospacer
*******.**********

198. spacer 9.66|3330812|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

199. spacer 9.67|3330857|18|NC_013216|CRT matches to position: 3320228-3320245, mismatch: 1, identity: 0.944

tactggtactgctggtgc	CRISPR spacer
tactggcactgctggtgc	Protospacer
******.***********

200. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

201. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

202. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

203. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

204. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

205. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

206. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

207. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

208. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

209. spacer 9.68|3330902|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

210. spacer 9.70|3330992|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gacaggtactgcaggtgc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
*** **************

211. spacer 9.70|3330992|18|NC_013216|CRT matches to position: 3323372-3323389, mismatch: 1, identity: 0.944

gacaggtactgcaggtgc	CRISPR spacer
gacaggtactgcaggagc	Protospacer
*************** **

212. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

213. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

214. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

215. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

216. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

217. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

218. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

219. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

220. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3320897-3320914, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcattgctggtgc	Protospacer
********.*********

221. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

222. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3322967-3322984, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcgctgctggtgc	Protospacer
*******.**********

223. spacer 9.71|3331037|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

224. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319010-3319027, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

225. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319460-3319477, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcactgctggagc	Protospacer
*************** **

226. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3319589-3319606, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gactggcattgctggtgc	Protospacer
********.*********

227. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3323282-3323299, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

228. spacer 9.72|3331082|18|NC_013216|CRT matches to position: 3323327-3323344, mismatch: 1, identity: 0.944

gactggcactgctggtgc	CRISPR spacer
gaccggcactgctggtgc	Protospacer
***.**************

229. spacer 9.73|3331127|18|NC_013216|CRT matches to position: 3319325-3319342, mismatch: 1, identity: 0.944

gactggtactgctggtgt	CRISPR spacer
gactggtactgctggagt	Protospacer
*************** **

230. spacer 9.73|3331127|18|NC_013216|CRT matches to position: 3319415-3319432, mismatch: 1, identity: 0.944

gactggtactgctggtgt	CRISPR spacer
gactggtactgctggagt	Protospacer
*************** **

231. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

232. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

233. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

234. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

235. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

236. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

237. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

238. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

239. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3320897-3320914, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcattgctggtgc	Protospacer
********.*********

240. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

241. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3322967-3322984, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcgctgctggtgc	Protospacer
*******.**********

242. spacer 9.74|3331172|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

243. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

244. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

245. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

246. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

247. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

248. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

249. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

250. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

251. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3320897-3320914, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcattgctggtgc	Protospacer
********.*********

252. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

253. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3322967-3322984, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gaccggcgctgctggtgc	Protospacer
*******.**********

254. spacer 9.75|3331217|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gaccggcactgctggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
***.**************

255. spacer 9.76|3331262|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gaccggtactgcaggagc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
*************** **

256. spacer 9.76|3331262|18|NC_013216|CRT matches to position: 3323372-3323389, mismatch: 1, identity: 0.944

gaccggtactgcaggagc	CRISPR spacer
gacaggtactgcaggagc	Protospacer
*** **************

257. spacer 9.77|3331307|18|NC_013216|CRT matches to position: 3322922-3322939, mismatch: 1, identity: 0.944

aactggcactgctggtgc	CRISPR spacer
aaccggcactgctggtgc	Protospacer
***.**************

258. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

259. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

260. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

261. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

262. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

263. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

264. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

265. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

266. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

267. spacer 9.79|3331397|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gactggcactgcaggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

268. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3319145-3319162, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

269. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3319190-3319207, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

270. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3319280-3319297, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

271. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3319370-3319387, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

272. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3319679-3319696, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

273. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3320003-3320020, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

274. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3320183-3320200, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

275. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3320672-3320689, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

276. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3321527-3321544, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

277. spacer 9.80|3331442|18|NC_013216|CRT matches to position: 3323147-3323164, mismatch: 1, identity: 0.944

gactggcactgcgggtgc	CRISPR spacer
gactggcactgctggtgc	Protospacer
************ *****

278. spacer 9.81|3331487|18|NC_013216|CRT matches to position: 3321077-3321094, mismatch: 1, identity: 0.944

gactggtactgcaggtgc	CRISPR spacer
gaccggtactgcaggtgc	Protospacer
***.**************

279. spacer 8.2|3190028|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to position: 4393160-4393196, mismatch: 2, identity: 0.946

gaaacgaaaagcggaaatgaaaaagttctcgaaaaaa	CRISPR spacer
gaaacgaaaggaggaaatgaaaaagttctcgaaaaaa	Protospacer
*********.* *************************

280. spacer 8.3|3190095|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to position: 4393160-4393196, mismatch: 2, identity: 0.946

gaaacgaaaagcggaaatgaaaaagttctcgaaaaaa	CRISPR spacer
gaaacgaaaggaggaaatgaaaaagttctcgaaaaaa	Protospacer
*********.* *************************

281. spacer 9.61|3330578|27|NC_013216|CRT matches to position: 3323408-3323434, mismatch: 2, identity: 0.926

cactggcccaactggtactgcaggtgc	CRISPR spacer
cacaggcccaactggtactgcaggagc	Protospacer
*** ******************** **

282. spacer 9.61|3330578|27|NC_013216|CRT matches to position: 3323453-3323479, mismatch: 2, identity: 0.926

cactggcccaactggtactgcaggtgc	CRISPR spacer
cacaggcccaactggtactgcaggagc	Protospacer
*** ******************** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	MH629685	Synechococcus virus S-PRM1, complete genome	127282-127308	4	0.852
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1029491-1029517	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1674977-1675003	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	944722-944748	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1103754-1103780	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1121840-1121866	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1314277-1314303	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1450138-1450164	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1022736-1022762	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1365930-1365956	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1111505-1111531	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	826359-826385	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1035127-1035153	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	937231-937257	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1031828-1031854	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1030054-1030080	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1111494-1111520	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1117234-1117260	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1144857-1144883	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1121847-1121873	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	995269-995295	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1117234-1117260	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1144857-1144883	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1117234-1117260	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	995292-995318	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1117238-1117264	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1144857-1144883	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1144857-1144883	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1144857-1144883	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	995292-995318	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1034296-1034322	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1014970-1014996	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1062917-1062943	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1109073-1109099	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	995292-995318	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1117233-1117259	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	995292-995318	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	995292-995318	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1144858-1144884	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1608182-1608208	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1391216-1391242	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	996875-996901	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	774147-774173	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1592363-1592389	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	4493-4519	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1137249-1137275	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	55027-55053	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	957559-957585	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1137216-1137242	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1136039-1136065	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1136052-1136078	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1136052-1136078	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	932494-932520	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1136041-1136067	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1040308-1040334	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1136041-1136067	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1064766-1064792	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1137215-1137241	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1136052-1136078	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	918671-918697	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1136063-1136089	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1136041-1136067	5	0.815
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	918671-918697	5	0.815
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	159951-159977	5	0.815
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	NZ_CP013052	Sinorhizobium americanum CCGM7 plasmid A, complete sequence	32212-32238	5	0.815
NC_013216_8	8.145\|3199461\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3199461-3199495	35	MG945466	UNVERIFIED: Microviridae sp. isolate 243-1711, complete genome	1290-1324	6	0.829
NC_013216_8	8.145\|3199461\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3199461-3199495	35	MG945912	UNVERIFIED: Microviridae sp. isolate 6245-1602, partial genome	3838-3872	6	0.829
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	826939-826965	6	0.778
NC_013216_9	9.6\|3328034\|27\|NC_013216\|CRT	3328034-3328060	27	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1388444-1388470	6	0.778
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	MT310885	Mycobacterium phage AN9, complete genome	11815-11841	6	0.778
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	AP018476	Mycobacterium phage C3 DNA, complete sequence	11815-11841	6	0.778
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	MT310884	Mycobacterium phage ANI8, complete genome	11815-11841	6	0.778
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	NC_017973	Mycobacterium phage SWU1, complete genome	10994-11020	6	0.778
NC_013216_9	9.61\|3330578\|27\|NC_013216\|CRT	3330578-3330604	27	MT310876	Mycobacterium phage VC3, complete genome	11815-11841	6	0.778
NC_013216_11	11.25\|3836200\|33\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	3836200-3836232	33	HQ634187	Cyanophage KBS-S-2A genomic sequence	35479-35511	6	0.818
NC_013216_3	3.10\|2199444\|31\|NC_013216\|CRISPRCasFinder,CRT	2199444-2199474	31	MT074146	Bacteroides phage SJC03, complete genome	20785-20815	7	0.774
NC_013216_8	8.142\|3199264\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3199264-3199298	35	MN693020	Marine virus AFVG_117M64, complete genome	3123-3157	7	0.8
NC_013216_8	8.48\|3193052\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193052-3193088	37	MN693008	Marine virus AFVG_117M9, complete genome	37570-37606	8	0.784
NC_013216_8	8.142\|3199264\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3199264-3199298	35	AP014380	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C70, * SEQUENCING IN PROGRESS *	29107-29141	8	0.771
NC_013216_9	9.3\|3327881\|36\|NC_013216\|CRT	3327881-3327916	36	NZ_CP033971	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence	251654-251689	8	0.778
NC_013216_11	11.11\|3835276\|34\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	3835276-3835309	34	MH494197	Escherichia phage CMSTMSU, complete genome	163003-163036	8	0.765
NC_013216_13	13.1\|4211372\|34\|NC_013216\|CRISPRCasFinder	4211372-4211405	34	MH341451	Listeria phage PSU-VKH-LP019, complete genome	9269-9302	8	0.765
NC_013216_13	13.1\|4211372\|34\|NC_013216\|CRISPRCasFinder	4211372-4211405	34	KP399677	Listeria phage vB_LmoS_188, complete genome	9272-9305	8	0.765
NC_013216_3	3.27\|2200565\|36\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2200565-2200600	36	NZ_CP036176	Klebsiella huaxiensis strain WCHKl090001 plasmid p1_090001, complete sequence	4241-4276	9	0.75
NC_013216_8	8.2\|3190028\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3190028-3190064	37	NZ_CP015437	Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence	43495-43531	9	0.757
NC_013216_8	8.3\|3190095\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3190095-3190131	37	NZ_CP015437	Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence	43495-43531	9	0.757
NC_013216_8	8.48\|3193052\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193052-3193088	37	MN693861	Marine virus AFVG_250M517, complete genome	22771-22807	9	0.757
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	NC_021183	Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence	49763-49797	9	0.743
NC_013216_8	8.142\|3199264\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3199264-3199298	35	MN693508	Marine virus AFVG_25M1, complete genome	55367-55401	9	0.743
NC_013216_8	8.148\|3192857\|30\|NC_013216\|CRT	3192857-3192886	30	NZ_CP023065	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence	568200-568229	9	0.7
NC_013216_11	11.16\|3835606\|34\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	3835606-3835639	34	NZ_AP018284	Chondrocystis sp. NIES-4102 plasmid plasmid3 DNA, complete genome	85513-85546	9	0.735
NC_013216_14	14.17\|4452237\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	4452237-4452273	37	MK165087	Escherichia phage BRET, complete genome	23643-23679	9	0.757
NC_013216_1	1.62\|937586\|36\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	937586-937621	36	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	149818-149853	10	0.722
NC_013216_3	3.27\|2200565\|36\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2200565-2200600	36	MK250029	Prevotella phage Lak-C1, complete genome	402156-402191	10	0.722
NC_013216_3	3.27\|2200565\|36\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2200565-2200600	36	MK250016	Prevotella phage Lak-A1, complete genome	437256-437291	10	0.722
NC_013216_3	3.27\|2200565\|36\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2200565-2200600	36	MK250019	Prevotella phage Lak-A2, complete genome	355563-355598	10	0.722
NC_013216_3	3.35\|2201096\|38\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2201096-2201133	38	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	230362-230399	10	0.737
NC_013216_3	3.35\|2201096\|38\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2201096-2201133	38	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	156251-156288	10	0.737
NC_013216_3	3.35\|2201096\|38\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2201096-2201133	38	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	48986-49023	10	0.737
NC_013216_3	3.35\|2201096\|38\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2201096-2201133	38	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	134104-134141	10	0.737
NC_013216_5	5.4\|2218156\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	2218156-2218192	37	MH552500	CrAssphage sp. isolate ctcc615, complete genome	14636-14672	10	0.73
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	MN693216	Marine virus AFVG_25M437, complete genome	25343-25377	10	0.714
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	MN693366	Marine virus AFVG_25M438, complete genome	25345-25379	10	0.714
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	MN693369	Marine virus AFVG_25M386, complete genome	25913-25947	10	0.714
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	MN693188	Marine virus AFVG_25M385, complete genome	8094-8128	10	0.714
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	MF630921	Escherichia phage IMM-002, complete genome	34921-34955	10	0.714
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	MN693416	Marine virus AFVG_25M53, complete genome	7619-7653	10	0.714
NC_013216_8	8.66\|3194243\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3194243-3194277	35	MN693588	Marine virus AFVG_25M366, complete genome	7846-7880	10	0.714
NC_013216_8	8.145\|3199461\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3199461-3199495	35	NZ_CP045289	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence	24539-24573	10	0.714
NC_013216_11	11.4\|3834813\|34\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	3834813-3834846	34	NZ_LR134432	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 23	11235-11268	10	0.706
NC_013216_11	11.15\|3835540\|34\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	3835540-3835573	34	HG803181	Vibrio phage PV94 complete genome	18279-18312	10	0.706
NC_013216_11	11.25\|3836200\|33\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	3836200-3836232	33	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	267732-267764	10	0.697
NC_013216_2	2.98\|942711\|34\|NC_013216\|CRISPRCasFinder,CRT	942711-942744	34	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	71913-71946	11	0.676
NC_013216_3	3.19\|2200033\|37\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2200033-2200069	37	MK448636	Streptococcus satellite phage Javan749, complete genome	11191-11227	11	0.703
NC_013216_8	8.39\|3192462\|35\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3192462-3192496	35	MK448964	Streptococcus phage Javan502, complete genome	16572-16606	11	0.686
NC_013216_8	8.57\|3193648\|36\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193648-3193683	36	NC_018141	Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence	150269-150304	11	0.694
NC_013216_8	8.57\|3193648\|36\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193648-3193683	36	NZ_CP045305	Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence	3782-3817	11	0.694
NC_013216_8	8.57\|3193648\|36\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193648-3193683	36	NZ_CP025492	Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence	72299-72334	11	0.694
NC_013216_8	8.57\|3193648\|36\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193648-3193683	36	NZ_CP021284	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence	143603-143638	11	0.694
NC_013216_8	8.57\|3193648\|36\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193648-3193683	36	NZ_CP042253	Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence	5967-6002	11	0.694
NC_013216_8	8.57\|3193648\|36\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3193648-3193683	36	NZ_CP011106	Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence	140483-140518	11	0.694
NC_013216_10	10.2\|3748445\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3748445-3748481	37	NZ_CP036373	Klebsiella pneumoniae strain WCHKP020037 plasmid p1_020037, complete sequence	94836-94872	11	0.703
NC_013216_2	2.98\|942711\|34\|NC_013216\|CRISPRCasFinder,CRT	942711-942744	34	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	982293-982326	12	0.647
NC_013216_3	3.27\|2200565\|36\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2200565-2200600	36	NZ_LR135248	Enterococcus faecium isolate E6988 plasmid 6	18696-18731	13	0.639
NC_013216_3	3.27\|2200565\|36\|NC_013216\|CRISPRCasFinder,CRT,PILER-CR	2200565-2200600	36	NZ_LR134111	Enterococcus faecium isolate E6043 plasmid 7	11427-11462	13	0.639

1. spacer 9.61|3330578|27|NC_013216|CRT matches to MH629685 (Synechococcus virus S-PRM1, complete genome) position: , mismatch: 4, identity: 0.852

cactggcccaactggtactgcaggtgc	CRISPR spacer
taccggcccaactggtcctgcaggtcc	Protospacer
.**.************ ******** *

2. spacer 9.6|3328034|27|NC_013216|CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

3. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

4. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

5. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

6. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

7. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

8. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

9. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

10. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

11. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

12. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

13. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

14. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

15. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

16. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

17. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

18. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

19. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

20. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

21. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

22. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

23. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

24. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

25. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

26. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

27. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

28. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

29. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

30. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

31. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

32. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

33. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

34. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

35. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

36. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

37. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

38. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

39. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

40. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

41. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

42. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

43. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

44. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

45. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

46. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

47. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

48. spacer 9.6|3328034|27|NC_013216|CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

49. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

50. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

51. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

52. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

53. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

54. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

55. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

56. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

57. spacer 9.6|3328034|27|NC_013216|CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtacggtactgcgggtcg	Protospacer
*.********  *************

58. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

59. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

60. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

61. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

62. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

63. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 5, identity: 0.815

cactggtccgaccggtactgcgggtgc	CRISPR spacer
cgctggtccgtgcggtactgcgggtcg	Protospacer
*.********  *************

64. spacer 9.61|3330578|27|NC_013216|CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.815

cactggcccaactggtactgcaggtgc	CRISPR spacer
acccggccaaactggtactgcaggcgc	Protospacer
  *.**** ***************.**

65. spacer 9.61|3330578|27|NC_013216|CRT matches to NZ_CP013052 (Sinorhizobium americanum CCGM7 plasmid A, complete sequence) position: , mismatch: 5, identity: 0.815

cactggcccaactggtactgcaggtgc	CRISPR spacer
acccggccaaactggtactgcaggcgc	Protospacer
  *.**** ***************.**

66. spacer 8.145|3199461|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MG945466 (UNVERIFIED: Microviridae sp. isolate 243-1711, complete genome) position: , mismatch: 6, identity: 0.829

ggagaaaagaatggagaaaagaaaaaat-atagcaa	CRISPR spacer
ctagaaaagaatggataaaagaaaatataataaca-	Protospacer
  ************* ********* ** ***.**

67. spacer 8.145|3199461|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MG945912 (UNVERIFIED: Microviridae sp. isolate 6245-1602, partial genome) position: , mismatch: 6, identity: 0.829

ggagaaaagaatggagaaaagaaaaa-atatagcaa	CRISPR spacer
ggagaaaacaatggaaaaaagaaaaataaataata-	Protospacer
******** ******.********** * ***..*

68. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 6, identity: 0.778

cactggtccgaccggtactgcgggtgc	CRISPR spacer
tctcggttcgaccggtactgcggctgc	Protospacer
. ..***.*************** ***

69. spacer 9.6|3328034|27|NC_013216|CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 6, identity: 0.778

cactggtccgaccggtactgcgggtgc	CRISPR spacer
tctcggttcgaccggtactgcggctgc	Protospacer
. ..***.*************** ***

70. spacer 9.61|3330578|27|NC_013216|CRT matches to MT310885 (Mycobacterium phage AN9, complete genome) position: , mismatch: 6, identity: 0.778

cactggcccaactggtactgcaggtgc	CRISPR spacer
gcctggcccaactggttctgcagttcg	Protospacer
  ************** ****** *

71. spacer 9.61|3330578|27|NC_013216|CRT matches to AP018476 (Mycobacterium phage C3 DNA, complete sequence) position: , mismatch: 6, identity: 0.778

cactggcccaactggtactgcaggtgc	CRISPR spacer
gcctggcccaactggttctgcagttcg	Protospacer
  ************** ****** *

72. spacer 9.61|3330578|27|NC_013216|CRT matches to MT310884 (Mycobacterium phage ANI8, complete genome) position: , mismatch: 6, identity: 0.778

cactggcccaactggtactgcaggtgc	CRISPR spacer
gcctggcccaactggttctgcagttcg	Protospacer
  ************** ****** *

73. spacer 9.61|3330578|27|NC_013216|CRT matches to NC_017973 (Mycobacterium phage SWU1, complete genome) position: , mismatch: 6, identity: 0.778

cactggcccaactggtactgcaggtgc	CRISPR spacer
gcctggcccaactggttctgcagttcg	Protospacer
  ************** ****** *

74. spacer 9.61|3330578|27|NC_013216|CRT matches to MT310876 (Mycobacterium phage VC3, complete genome) position: , mismatch: 6, identity: 0.778

cactggcccaactggtactgcaggtgc	CRISPR spacer
gcctggcccaactggttctgcagttcg	Protospacer
  ************** ****** *

75. spacer 11.25|3836200|33|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to HQ634187 (Cyanophage KBS-S-2A genomic sequence) position: , mismatch: 6, identity: 0.818

ttcctccaccaataattccttccagtgcttttt	CRISPR spacer
tccgtaatgcaataattccttccagtgcttttt	Protospacer
*.* *    ************************

76. spacer 3.10|2199444|31|NC_013216|CRISPRCasFinder,CRT matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 7, identity: 0.774

ttttaaggaggttaattaaaagtttatgatc	CRISPR spacer
tgtcaaagaggtaaattaaaagtttatcgtg	Protospacer
* *.**.***** ************** .*

77. spacer 8.142|3199264|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693020 (Marine virus AFVG_117M64, complete genome) position: , mismatch: 7, identity: 0.8

aaaacat-aatgtacaaacaagattaacagaaatga	CRISPR spacer
-caacatgggtgtaccaaaaagattaacagaaatgc	Protospacer
  ***** ..***** ** ****************

78. spacer 8.48|3193052|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 8, identity: 0.784

gtggatctttaaatataactacagatgctaatgaaaa	CRISPR spacer
atgattttattaatctaaccacagatgctaatgaaaa	Protospacer
.**. *.* * *** ****.*****************

79. spacer 8.142|3199264|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to AP014380 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S43-C70, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.771

aaaacat-aatgtacaaacaagattaacagaaatga	CRISPR spacer
-aattatgggtgtaccaaaaagattaacagaaatgc	Protospacer
 ** .** ..***** ** ****************

80. spacer 9.3|3327881|36|NC_013216|CRT matches to NZ_CP033971 (Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.778

tacagg---cactggcgcaaccggccccacaggtccaac	CRISPR spacer
---gggctccacaggcgcaaccggcgccacaggtccggc	Protospacer
   .**   *** ************ **********..*

81. spacer 11.11|3835276|34|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 8, identity: 0.765

tgtagacattataaacttctctattcatacagat	CRISPR spacer
gatagacattataaagttctctcttcactaagtt	Protospacer
 .************* ****** ****.  ** *

82. spacer 13.1|4211372|34|NC_013216|CRISPRCasFinder matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 8, identity: 0.765

tcgtagtgcatgttttcaccccgctttcatcttg	CRISPR spacer
gctttactcatgttttcacccctctttcagcttg	Protospacer
 * * .. ************** ****** ****

83. spacer 13.1|4211372|34|NC_013216|CRISPRCasFinder matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 8, identity: 0.765

tcgtagtgcatgttttcaccccgctttcatcttg	CRISPR spacer
gctttactcatgttttcacccctctttcagcttg	Protospacer
 * * .. ************** ****** ****

84. spacer 3.27|2200565|36|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036176 (Klebsiella huaxiensis strain WCHKl090001 plasmid p1_090001, complete sequence) position: , mismatch: 9, identity: 0.75

tagatataaacttataaacttataaatttaaaagga	CRISPR spacer
acaaaacaaacttataaacttataaacttataagtt	Protospacer
  .* *.*******************.*** ***

85. spacer 8.2|3190028|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

gaaacgaaaagcggaaatgaaaaagttctcgaaaaaa	CRISPR spacer
taaacaagaagcggaaatgaaaaagttcggtgaagta	Protospacer
 ****.*.********************   .**. *

86. spacer 8.3|3190095|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

gaaacgaaaagcggaaatgaaaaagttctcgaaaaaa	CRISPR spacer
taaacaagaagcggaaatgaaaaagttcggtgaagta	Protospacer
 ****.*.********************   .**. *

87. spacer 8.48|3193052|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693861 (Marine virus AFVG_250M517, complete genome) position: , mismatch: 9, identity: 0.757

gtggatctttaaatataactacagatgctaatgaaaa	CRISPR spacer
acggtgctttaaatataactacagttgataatgatgc	Protospacer
..**  ****************** ** ****** .

88. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NC_021183 (Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence) position: , mismatch: 9, identity: 0.743

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
aaaagggaaattggttacatgaataacattattct	Protospacer
.**.  ********* ******.******** *

89. spacer 8.142|3199264|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693508 (Marine virus AFVG_25M1, complete genome) position: , mismatch: 9, identity: 0.743

aaaacataatgtacaaacaagattaacagaaatga	CRISPR spacer
aagaatgggtgtaccaaaaagattaacagaaatgc	Protospacer
**.*   ..***** ** ****************

90. spacer 8.148|3192857|30|NC_013216|CRT matches to NZ_CP023065 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence) position: , mismatch: 9, identity: 0.7

tgctggcgcaaaataatacccgggaaggtg	CRISPR spacer
cctgatcgcagaataattcccgggaaggtc	Protospacer
. . . ****.****** ***********

91. spacer 11.16|3835606|34|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018284 (Chondrocystis sp. NIES-4102 plasmid plasmid3 DNA, complete genome) position: , mismatch: 9, identity: 0.735

tcatttttgacttctataaaatatcc-actgtcca	CRISPR spacer
gaatttttgtcttctacaaaatatccaaacatac-	Protospacer
  ******* ******.********* * ..* *

92. spacer 14.17|4452237|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MK165087 (Escherichia phage BRET, complete genome) position: , mismatch: 9, identity: 0.757

aaagttatcggaattcttacccccgtatttaatacag	CRISPR spacer
gaagttaccggaattcgtacccccgtaaatctgaccg	Protospacer
.******.******** **********  *   ** *

93. spacer 1.62|937586|36|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 10, identity: 0.722

gggataaggtgtttttgacttcaacgctgcggcctc	CRISPR spacer
caccgaaggtgtttttgacatcaaggctgcgagcac	Protospacer
 .   ************** **** ******. * *

94. spacer 3.27|2200565|36|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 10, identity: 0.722

tagatataaacttataaacttataaatttaaaagga	CRISPR spacer
aaaaattaaacttaaaaacttataaaattaaatatt	Protospacer
 *.*  ******** *********** ***** .

95. spacer 3.27|2200565|36|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 10, identity: 0.722

tagatataaacttataaacttataaatttaaaagga	CRISPR spacer
aaaaattaaacttaaaaacttataaaattaaatatt	Protospacer
 *.*  ******** *********** ***** .

96. spacer 3.27|2200565|36|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 10, identity: 0.722

tagatataaacttataaacttataaatttaaaagga	CRISPR spacer
aaaaattaaacttaaaaacttataaaattaaatatt	Protospacer
 *.*  ******** *********** ***** .

97. spacer 3.35|2201096|38|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 10, identity: 0.737

cattatgaaaatgtttttctgtcatttcctttcctcta	CRISPR spacer
cttttaatgcctgttcttctgtcatttccattcctcta	Protospacer
* **  . .  ****.************* ********

98. spacer 3.35|2201096|38|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 10, identity: 0.737

cattatgaaaatgtttttctgtcatttcctttcctcta	CRISPR spacer
cttttaatgcctgttcttctgtcatttccattcctcta	Protospacer
* **  . .  ****.************* ********

99. spacer 3.35|2201096|38|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 10, identity: 0.737

cattatgaaaatgtttttctgtcatttcctttcctcta	CRISPR spacer
cttttaatgcctgttcttctgtcatttccattcctcta	Protospacer
* **  . .  ****.************* ********

100. spacer 3.35|2201096|38|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 10, identity: 0.737

cattatgaaaatgtttttctgtcatttcctttcctcta	CRISPR spacer
cttttaatgcctgttcttctgtcatttccattcctcta	Protospacer
* **  . .  ****.************* ********

101. spacer 5.4|2218156|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MH552500 (CrAssphage sp. isolate ctcc615, complete genome) position: , mismatch: 10, identity: 0.73

actaattttgaataaagttttaatttaaactacttta	CRISPR spacer
aaaataaatgaataaagttttaattataactactgaa	Protospacer
*  *    *****************  *******  *

102. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693216 (Marine virus AFVG_25M437, complete genome) position: , mismatch: 10, identity: 0.714

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
cagatctggattgataacatgactaacattaatag	Protospacer
 *..*. ..****.******** ***********.

103. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693366 (Marine virus AFVG_25M438, complete genome) position: , mismatch: 10, identity: 0.714

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
cagatctggattgataacatgactaacattaatag	Protospacer
 *..*. ..****.******** ***********.

104. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693369 (Marine virus AFVG_25M386, complete genome) position: , mismatch: 10, identity: 0.714

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
cagatctggattgataacatgactaacattaatag	Protospacer
 *..*. ..****.******** ***********.

105. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693188 (Marine virus AFVG_25M385, complete genome) position: , mismatch: 10, identity: 0.714

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
cagatctggattgataacatgactaacattaatag	Protospacer
 *..*. ..****.******** ***********.

106. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MF630921 (Escherichia phage IMM-002, complete genome) position: , mismatch: 10, identity: 0.714

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
tcctctgaagttggtaacatgagtaactttgttat	Protospacer
    .****.***************** **. **

107. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693416 (Marine virus AFVG_25M53, complete genome) position: , mismatch: 10, identity: 0.714

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
cagatctggattgataacatgactaacattaatag	Protospacer
 *..*. ..****.******** ***********.

108. spacer 8.66|3194243|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MN693588 (Marine virus AFVG_25M366, complete genome) position: , mismatch: 10, identity: 0.714

gaagttgaaattggtaacatgagtaacattaataa	CRISPR spacer
cagatctggattgataacatgactaacattaatag	Protospacer
 *..*. ..****.******** ***********.

109. spacer 8.145|3199461|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 10, identity: 0.714

ggagaaaagaatggagaaaagaaaaaatatagcaa	CRISPR spacer
aaagaaaagaaaggagaaaagaaagaagaaaaggg	Protospacer
..********* ************.** * *. ..

110. spacer 11.4|3834813|34|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134432 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 23) position: , mismatch: 10, identity: 0.706

agaaaaattatttacaaatggcactcgaaagggt	CRISPR spacer
agaaaaattatttacgaatagcactaacgaacca	Protospacer
***************.***.***** . .*.

111. spacer 11.15|3835540|34|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to HG803181 (Vibrio phage PV94 complete genome) position: , mismatch: 10, identity: 0.706

cttgactaagtcttcgctgtcctcacccagatct	CRISPR spacer
acttgcaggttcttcgctgtcgtcacccaaatct	Protospacer
 .* .* .. *********** *******.****

112. spacer 11.25|3836200|33|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ttcctccaccaataattccttccagtgcttttt	CRISPR spacer
gtaacttaccaataatttcttccattgctttca	Protospacer
 *  ...**********.****** ******.

113. spacer 2.98|942711|34|NC_013216|CRISPRCasFinder,CRT matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 11, identity: 0.676

tatgcggtggcagcgatcttcggcctggatcctt	CRISPR spacer
ctggcggtggccgcgatcgtcggcctgctgctcg	Protospacer
.  ******** ****** ********   *..

114. spacer 3.19|2200033|37|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 11, identity: 0.703

attggtcggggcttttttttattttctaataaaaaac	CRISPR spacer
ttattttttctctcttttttattttctaattaaaaac	Protospacer
 *   *.    **.**************** ******

115. spacer 8.39|3192462|35|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 11, identity: 0.686

atagaaggtgaacaaatacctttagattggtattc	CRISPR spacer
tgagaaggtgaaaaaataccttgagatgtcaggtt	Protospacer
  ********** ********* ****    . *.

116. spacer 8.57|3193648|36|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NC_018141 (Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence) position: , mismatch: 11, identity: 0.694

gtacttcttaaacaccatattactacacacaaagtg	CRISPR spacer
agtcccattaatccccatattactacacacaaaaac	Protospacer
.  *.. **** * *******************.

117. spacer 8.57|3193648|36|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045305 (Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence) position: , mismatch: 11, identity: 0.694

gtacttcttaaacaccatattactacacacaaagtg	CRISPR spacer
agtcccattaatccccatattactacacacaaaaac	Protospacer
.  *.. **** * *******************.

118. spacer 8.57|3193648|36|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025492 (Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence) position: , mismatch: 11, identity: 0.694

gtacttcttaaacaccatattactacacacaaagtg	CRISPR spacer
agtcccattaatccccatattactacacacaaaaac	Protospacer
.  *.. **** * *******************.

119. spacer 8.57|3193648|36|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021284 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.694

gtacttcttaaacaccatattactacacacaaagtg	CRISPR spacer
agtcccattaatccccatattactacacacaaaaac	Protospacer
.  *.. **** * *******************.

120. spacer 8.57|3193648|36|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042253 (Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence) position: , mismatch: 11, identity: 0.694

gtacttcttaaacaccatattactacacacaaagtg	CRISPR spacer
agtcccattaatccccatattactacacacaaaaac	Protospacer
.  *.. **** * *******************.

121. spacer 8.57|3193648|36|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011106 (Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.694

gtacttcttaaacaccatattactacacacaaagtg	CRISPR spacer
agtcccattaatccccatattactacacacaaaaac	Protospacer
.  *.. **** * *******************.

122. spacer 10.2|3748445|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036373 (Klebsiella pneumoniae strain WCHKP020037 plasmid p1_020037, complete sequence) position: , mismatch: 11, identity: 0.703

ccaagatttattcctaacattgatgcagtaataaagc	CRISPR spacer
agtaagtacatacctaacattgatgaagtaataaatg	Protospacer
   *..* .** ************* *********

123. spacer 2.98|942711|34|NC_013216|CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 12, identity: 0.647

tatgcggtggcagcgatcttcggcctggatcctt	CRISPR spacer
ggcgcggtgcctgcgatcttcggcctgtgggtcg	Protospacer
 ..****** * *************** .  ..

124. spacer 3.27|2200565|36|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135248 (Enterococcus faecium isolate E6988 plasmid 6) position: , mismatch: 13, identity: 0.639

--------tagatataaacttataaacttataaatttaaaagga	CRISPR spacer
aatttataaaattataaacttataaaattatgaatt--------	Protospacer
         *. ************** ****.****

125. spacer 3.27|2200565|36|NC_013216|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134111 (Enterococcus faecium isolate E6043 plasmid 7) position: , mismatch: 13, identity: 0.639

--------tagatataaacttataaacttataaatttaaaagga	CRISPR spacer
aatttataaaattataaacttataaaattatgaatt--------	Protospacer
         *. ************** ****.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

151801 : 209130

Wolbachia_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042316429.1\|151801_153043_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	8.4e-39	31.8
WP_012813549.1\|153331_154465_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012813550.1\|154872_155742_+	hypothetical protein	NA	NA	NA	NA
WP_042315197.1\|156027_156216_-	hypothetical protein	NA	NA	NA	NA
WP_042315201.1\|156360_156696_-	hypothetical protein	NA	NA	NA	NA
WP_012813551.1\|156835_157414_+	hypothetical protein	NA	NA	NA	NA
WP_012813552.1\|157430_157619_+	hypothetical protein	NA	NA	NA	NA
WP_052292887.1\|157823_158117_+	hypothetical protein	NA	NA	NA	NA
WP_042315206.1\|158260_158785_+	DUF2380 domain-containing protein	NA	NA	NA	NA
WP_012813554.1\|158795_159383_+	hypothetical protein	NA	NA	NA	NA
WP_042315207.1\|159782_160148_-	hypothetical protein	NA	NA	NA	NA
WP_042316435.1\|161800_161986_+	hypothetical protein	NA	NA	NA	NA
WP_012813556.1\|162764_163019_+\|transposase	transposase	NA	NA	NA	NA
WP_012813557.1\|163361_164495_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012813561.1\|168491_169361_+	hypothetical protein	NA	NA	NA	NA
WP_157863039.1\|169727_170726_+	hypothetical protein	NA	NA	NA	NA
WP_012813563.1\|170738_171242_+	hypothetical protein	NA	NA	NA	NA
WP_157862815.1\|171683_171866_+	hypothetical protein	NA	NA	NA	NA
WP_012813564.1\|172016_172919_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_012813565.1\|173892_174144_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012813566.1\|174145_174511_+	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	2.7e-22	47.4
WP_083773334.1\|175407_175554_-	hypothetical protein	NA	NA	NA	NA
WP_169306032.1\|178614_183984_+	hypothetical protein	S5W9C6	Leptospira_phage	6.0e-09	31.9
WP_012813568.1\|183995_184577_+	hypothetical protein	NA	NA	NA	NA
WP_012813570.1\|185858_186284_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012813571.1\|186581_187214_-	peptidase M56 BlaR1	NA	NA	NA	NA
WP_012813572.1\|187219_187579_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_012813573.1\|188007_188238_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_042316441.1\|188277_189042_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_012813575.1\|189115_190657_+	iron hydrogenase small subunit	NA	NA	NA	NA
WP_012813576.1\|190678_191467_+	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	1.1e-15	32.3
WP_012813577.1\|191491_192628_+	Ni/Fe-hydrogenase cytochrome b subunit	NA	NA	NA	NA
WP_012813578.1\|192769_193687_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012813579.1\|193918_195640_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_012813580.1\|195663_197457_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_012813581.1\|197470_197830_-	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_012813582.1\|197826_198381_-	ATP-binding protein	NA	NA	NA	NA
WP_012813583.1\|198387_198885_-	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA
WP_012813584.1\|198992_199343_-	iron-sulfur-binding hydrogenase	NA	NA	NA	NA
WP_012813585.1\|199342_200674_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_042316443.1\|200673_201075_-	ATP-binding protein	NA	NA	NA	NA
WP_042316445.1\|201128_201470_-	transcriptional regulator	NA	NA	NA	NA
WP_015755857.1\|201869_202919_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydE	NA	NA	NA	NA
WP_015755858.1\|202966_204376_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydG	NA	NA	NA	NA
WP_015755859.1\|204451_205678_-	[FeFe] hydrogenase H-cluster maturation GTPase HydF	NA	NA	NA	NA
WP_015755860.1\|205661_207128_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_015755861.1\|207897_209130_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA

DBSCAN-SWA_2

429284 : 491206

Streptococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756076.1\|429284_429689_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	5.3e-51	72.0
WP_015756077.1\|429694_430786_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A068A1P5	Thermus_phage	1.6e-57	37.2
WP_083773345.1\|430966_431197_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_015756078.1\|431602_431776_+	hypothetical protein	NA	NA	NA	NA
WP_052292898.1\|432577_432820_+	hypothetical protein	NA	NA	NA	NA
WP_157862824.1\|433133_433343_-	hypothetical protein	NA	NA	NA	NA
WP_015756080.1\|433749_438939_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_015756081.1\|439140_440076_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157862825.1\|440203_440734_-	hypothetical protein	NA	NA	NA	NA
WP_015756083.1\|440844_441048_-	hypothetical protein	NA	NA	NA	NA
WP_015756084.1\|441123_441651_-	hypothetical protein	NA	NA	NA	NA
WP_015756086.1\|445800_445977_-	hypothetical protein	NA	NA	NA	NA
WP_174260358.1\|446379_447819_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_015756088.1\|448276_451957_+	S-layer homology domain-containing protein	K4FB16	Cronobacter_phage	4.9e-10	49.4
WP_015756089.1\|452127_452685_-	flavin reductase family protein	NA	NA	NA	NA
WP_015756090.1\|453099_453486_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015756091.1\|453732_455799_+	adenylyltransferase/cytidyltransferase family protein	NA	NA	NA	NA
WP_015756092.1\|455969_456515_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015756093.1\|456507_457824_+	hypothetical protein	NA	NA	NA	NA
WP_015756094.1\|458002_458779_-	ABC-2 family transporter protein	NA	NA	NA	NA
WP_015756095.1\|458780_459584_-	ABC transporter permease	NA	NA	NA	NA
WP_015756096.1\|459580_460555_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.1e-20	27.9
WP_015756097.1\|460840_461854_+	rod shape-determining protein	NA	NA	NA	NA
WP_015756098.1\|462392_463187_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.1e-19	29.1
WP_015756099.1\|463170_464178_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.1e-08	24.9
WP_015756100.1\|464201_465065_-	ABC transporter permease	NA	NA	NA	NA
WP_015756101.1\|465066_466017_-	ABC transporter permease	NA	NA	NA	NA
WP_015756102.1\|466022_467582_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_042316518.1\|467917_468607_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_015756104.1\|468992_469412_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_015756105.1\|469429_471322_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.0e-101	35.8
WP_015756106.1\|471724_473068_+	ATP-binding protein	NA	NA	NA	NA
WP_015756076.1\|473208_473613_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	5.3e-51	72.0
WP_015756107.1\|473618_474710_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A068A1P5	Thermus_phage	1.6e-57	37.5
WP_083773346.1\|474966_475242_-	HNH endonuclease	Q2NPD2	Xanthomonas_virus	9.3e-07	50.8
WP_015756108.1\|475312_476317_-	DUF4065 domain-containing protein	Q9AZD6	Lactococcus_phage	1.2e-06	28.0
WP_015756109.1\|476344_476755_-	hypothetical protein	NA	NA	NA	NA
WP_083773347.1\|477371_477620_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015756110.1\|477621_478041_+	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_015756111.1\|478037_478385_+	DUF2200 domain-containing protein	NA	NA	NA	NA
WP_015756112.1\|478495_478798_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_042315293.1\|480196_480526_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_015756115.1\|480599_482414_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015756116.1\|482523_482871_+	toxin RelE	NA	NA	NA	NA
WP_015756120.1\|486209_487163_+	DMT family transporter	NA	NA	NA	NA
WP_015756121.1\|487820_488018_+	hypothetical protein	NA	NA	NA	NA
WP_015756122.1\|488038_488851_+	tetrapyrrole methylase	NA	NA	NA	NA
WP_042315294.1\|489357_489792_+	recombinase family protein	A0A1S5RFV4	Helicobacter_phage	2.4e-09	35.7
WP_015756124.1\|489748_491206_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA

DBSCAN-SWA_3

732837 : 745880

Hokovirus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756355.1\|732837_733374_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	6.6e-09	30.0
WP_174260373.1\|733418_734957_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.7e-20	30.5
WP_015756357.1\|735034_735550_-	hypothetical protein	NA	NA	NA	NA
WP_015756358.1\|735602_736313_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.7e-17	34.1
WP_015756359.1\|736866_738243_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.8e-50	33.5
WP_015756360.1\|738396_738924_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-20	41.3
WP_015756361.1\|739030_740323_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.4e-20	32.7
WP_015756362.1\|740339_741080_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
WP_015756363.1\|741129_742566_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	6.9e-61	33.7
WP_015756364.1\|742595_743636_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-70	45.9
WP_042315352.1\|743699_744308_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.3e-29	41.8
WP_015756366.1\|744338_745880_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.4e-64	47.4

DBSCAN-SWA_4

817999 : 875000

Streptococcus_phage(30.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756431.1\|817999_818506_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_015756432.1\|818572_819532_+	MoxR family ATPase	NA	NA	NA	NA
WP_015756433.1\|819552_820992_+	VWA domain-containing protein	NA	NA	NA	NA
WP_042316658.1\|821171_822866_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
WP_015756435.1\|823103_826541_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	6.8e-248	41.2
WP_015756436.1\|826675_826903_+	trp RNA-binding attenuation protein MtrB	NA	NA	NA	NA
WP_015756437.1\|827076_827268_+	hypothetical protein	NA	NA	NA	NA
WP_015756438.1\|827295_828144_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_015756439.1\|828145_829123_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_015756440.1\|829253_830216_+	6-phosphofructokinase	NA	NA	NA	NA
WP_015756441.1\|830228_831980_+	pyruvate kinase	A0A2H4PQU5	Staphylococcus_phage	1.2e-11	42.2
WP_015756442.1\|832331_832931_+	DedA family protein	NA	NA	NA	NA
WP_015756443.1\|832979_833975_+	G-D-S-L family lipolytic protein	NA	NA	NA	NA
WP_015756444.1\|834268_836293_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_015756445.1\|836225_837434_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_015756446.1\|837459_838578_+	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA
WP_015756447.1\|838621_840070_+	glycogen synthase GlgA	NA	NA	NA	NA
WP_015756448.1\|840134_841061_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	6.8e-86	53.6
WP_157862843.1\|841297_841879_+	DUF1256 domain-containing protein	NA	NA	NA	NA
WP_042315376.1\|842501_842801_+	hypothetical protein	NA	NA	NA	NA
WP_015756450.1\|842828_844073_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	3.6e-13	41.4
WP_015756451.1\|844096_845695_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_015756452.1\|845753_846428_-	HAD-IB family phosphatase	NA	NA	NA	NA
WP_015756453.1\|846655_847489_+	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	3.5e-73	50.2
WP_015756454.1\|847505_848618_-	hypothetical protein	NA	NA	NA	NA
WP_157862845.1\|849081_849246_+\|transposase	transposase	NA	NA	NA	NA
WP_015756456.1\|849723_851007_-	hypothetical protein	NA	NA	NA	NA
WP_015756458.1\|853006_854329_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	7.8e-59	35.0
WP_052292906.1\|854402_854732_+	FAD-dependent thymidylate synthase	NA	NA	NA	NA
WP_015756459.1\|854825_855068_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_015756460.1\|855280_855673_-	cupin domain-containing protein	NA	NA	NA	NA
WP_015755906.1\|856031_857714_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015756464.1\|858652_858850_+	hypothetical protein	NA	NA	NA	NA
WP_157863060.1\|858908_859376_+	AAA family ATPase	A0A142F1B0	Bacillus_phage	6.6e-21	39.7
WP_015756466.1\|859650_859857_+	helix-turn-helix transcriptional regulator	A0A0C5ABM0	Bacteriophage	4.6e-11	51.5
WP_015756467.1\|860175_861402_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.6e-53	37.5
WP_015756468.1\|862233_862569_+	hypothetical protein	NA	NA	NA	NA
WP_015756469.1\|862786_862954_+	hypothetical protein	NA	NA	NA	NA
WP_015756471.1\|863279_863594_+	hypothetical protein	NA	NA	NA	NA
WP_162013532.1\|863616_863811_+	hypothetical protein	NA	NA	NA	NA
WP_015756473.1\|864111_864780_+\|transposase	IS607 family transposase	A0A1S5RFV4	Helicobacter_phage	6.5e-22	34.3
WP_015756475.1\|866462_866873_+	hypothetical protein	NA	NA	NA	NA
WP_015756476.1\|866924_867647_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015756477.1\|867850_868234_-	hypothetical protein	NA	NA	NA	NA
WP_015756478.1\|868632_868965_-	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_015756479.1\|868961_869438_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_157862847.1\|869496_869817_-	hypothetical protein	NA	NA	NA	NA
WP_015756481.1\|870078_871803_-	PD40 domain-containing protein	NA	NA	NA	NA
WP_015756482.1\|872064_873327_-	hypothetical protein	NA	NA	NA	NA
WP_015756483.1\|873542_875000_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA

DBSCAN-SWA_5

910733 : 964199

Acinetobacter_phage(30.0%)

bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756509.1\|910733_911825_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0H3UZC2	Geobacillus_virus	7.1e-50	33.5
WP_015756510.1\|911830_912235_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.1e-51	72.0
WP_015756512.1\|912331_913531_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_015756513.1\|913801_914134_+	hypothetical protein	NA	NA	NA	NA
WP_015756514.1\|914911_915931_+	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA
WP_015756515.1\|915945_917106_+	prephenate dehydratase	NA	NA	NA	NA
WP_042316699.1\|917384_918857_+	anthranilate synthase component I	NA	NA	NA	NA
WP_015756517.1\|918903_919509_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.1e-63	55.7
WP_015756518.1\|919528_920563_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.3e-72	44.2
WP_015756519.1\|920559_921375_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	9.4e-39	39.0
WP_015756520.1\|921376_922012_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_015756521.1\|922004_922823_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_015756522.1\|922809_923634_+	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA
WP_042315396.1\|923926_924661_+	CRISPR-associated endoribonuclease Cas6	NA	NA	NA	NA
WP_015756524.1\|924673_926365_+	type I-B CRISPR-associated protein Cas8b1/Cst1	NA	NA	NA	NA
WP_015756525.1\|926368_927241_+	type I-B CRISPR-associated protein Cas7/Cst2/DevR	NA	NA	NA	NA
WP_015756526.1\|927227_927980_+	type I-B CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_157863061.1\|927976_930226_+	CRISPR-associated helicase Cas3'	A0A2R2ZGW0	Clostridioides_phage	1.5e-25	23.6
WP_015756528.1\|930255_930744_+	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_015756529.1\|930755_931748_+	type I-B CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_015756530.1\|931750_932029_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_015756115.1\|938140_939955_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_083773365.1\|943910_944069_-	hypothetical protein	NA	NA	NA	NA
WP_015756532.1\|944479_946597_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_015756533.1\|946611_947865_+	hypothetical protein	NA	NA	NA	NA
WP_015756534.1\|947869_949003_+	histidinol-phosphate transaminase	A0A142C026	Faustovirus	3.0e-19	28.3
WP_015756535.1\|949105_950155_+	hypothetical protein	NA	NA	NA	NA
WP_042315405.1\|950147_951785_+	AMP-binding protein	Q75ZG1	Hepacivirus	2.5e-38	24.8
WP_015756537.1\|951809_952694_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_015756538.1\|952764_953007_+	acyl carrier protein	NA	NA	NA	NA
WP_015756539.1\|953003_953504_+	MFS transporter	NA	NA	NA	NA
WP_015756540.1\|953491_953827_+	STAS domain-containing protein	NA	NA	NA	NA
WP_015756541.1\|953828_954257_+	ATP-binding protein	NA	NA	NA	NA
WP_015756542.1\|954253_955882_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_015756543.1\|955907_956450_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_157862851.1\|956451_956619_+	hypothetical protein	NA	NA	NA	NA
WP_015756545.1\|956635_957778_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015756546.1\|957798_959193_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_157863062.1\|959295_961446_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	6.5e-31	26.3
WP_015756548.1\|961472_964199_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	1.7e-31	25.7

DBSCAN-SWA_6

1112924 : 1160099

uncultured_Mediterranean_phage(42.86%)

tRNA,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756690.1\|1112924_1115708_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	2.9e-95	28.4
WP_015756691.1\|1115920_1116916_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_015756692.1\|1116964_1117960_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_042316748.1\|1117976_1119116_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015756694.1\|1119116_1120310_-	CapA family protein	NA	NA	NA	NA
WP_015756695.1\|1120535_1121390_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_015756696.1\|1121393_1122242_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_042315434.1\|1122365_1122674_+	hypothetical protein	NA	NA	NA	NA
WP_157863068.1\|1123001_1123640_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_015756700.1\|1123697_1124390_+	hypothetical protein	NA	NA	NA	NA
WP_157862859.1\|1124522_1124789_+	hypothetical protein	NA	NA	NA	NA
WP_042315437.1\|1124867_1125398_+	hypothetical protein	NA	NA	NA	NA
WP_015756702.1\|1125838_1128067_-	DNA translocase FtsK	Q853W3	Mycobacterium_phage	4.9e-90	50.0
WP_157862861.1\|1128208_1128385_-	hypothetical protein	NA	NA	NA	NA
WP_015756704.1\|1128581_1129313_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_015756705.1\|1129475_1130171_-	manganese catalase family protein	NA	NA	NA	NA
WP_015756706.1\|1130314_1130938_+	hypothetical protein	NA	NA	NA	NA
WP_015756707.1\|1131142_1132600_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_015756708.1\|1132877_1133174_+	hypothetical protein	NA	NA	NA	NA
WP_015756709.1\|1133251_1133644_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_015756710.1\|1133760_1134240_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_015756711.1\|1134245_1134857_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_015756712.1\|1134911_1135922_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.1e-07	25.4
WP_015756713.1\|1136610_1138449_+	APC family permease	NA	NA	NA	NA
WP_015756714.1\|1138550_1140377_-	APC family permease	NA	NA	NA	NA
WP_015756715.1\|1141194_1143012_+	DNA mismatch repair protein MutS domain-containing protein	E3T5Q7	Cafeteria_roenbergensis_virus	1.5e-15	26.2
WP_015756716.1\|1143634_1145848_-	hypothetical protein	NA	NA	NA	NA
WP_042316755.1\|1146056_1146614_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_015756718.1\|1146619_1146841_+	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_015756719.1\|1147025_1148417_+	SpoIID/LytB domain-containing protein	NA	NA	NA	NA
WP_015756721.1\|1149509_1150619_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.6e-89	48.9
WP_015756722.1\|1150735_1151044_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.2e-07	33.7
WP_042315443.1\|1151143_1151806_+	HD domain-containing protein	NA	NA	NA	NA
WP_015756724.1\|1151831_1153082_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_042316758.1\|1153098_1153971_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	8.5e-38	39.4
WP_015756726.1\|1154168_1154465_+	hypothetical protein	NA	NA	NA	NA
WP_052292910.1\|1154467_1155175_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_015756728.1\|1155339_1156311_+	cation transporter	NA	NA	NA	NA
WP_015756729.1\|1156492_1157260_+	RNA polymerase sigma-I factor	NA	NA	NA	NA
WP_157862863.1\|1157426_1157990_-\|coat	outer spore coat protein CotE	NA	NA	NA	NA
WP_042315445.1\|1158207_1159224_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_015756732.1\|1159565_1160099_+\|coat	outer spore coat protein CotE	NA	NA	NA	NA

DBSCAN-SWA_7

1445668 : 1489338

uncultured_Mediterranean_phage(60.0%)

transposase,integrase

attL 1484820:1484836|attR 1493584:1493600

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015757004.1\|1445668_1446049_+\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
WP_015757005.1\|1446020_1446971_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015757006.1\|1447480_1450318_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	6.8e-52	26.9
WP_015757007.1\|1450320_1454994_+	class I SAM-dependent DNA methyltransferase	A0A1B1IUC6	uncultured_Mediterranean_phage	6.4e-15	21.9
WP_015757008.1\|1454990_1461401_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	1.2e-67	22.7
WP_042315503.1\|1461387_1463514_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA
WP_042315505.1\|1463691_1464030_-	hypothetical protein	NA	NA	NA	NA
WP_015757010.1\|1464522_1468251_+	hypothetical protein	NA	NA	NA	NA
WP_015756644.1\|1468311_1469445_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_042315506.1\|1469702_1471784_+	AAA family ATPase	NA	NA	NA	NA
WP_015757012.1\|1471780_1472965_+	hypothetical protein	NA	NA	NA	NA
WP_015757013.1\|1473146_1474445_+	hypothetical protein	NA	NA	NA	NA
WP_015757014.1\|1474437_1475637_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	4.3e-24	30.0
WP_015757015.1\|1475623_1476331_+	hypothetical protein	NA	NA	NA	NA
WP_015757016.1\|1476708_1477212_+	hypothetical protein	NA	NA	NA	NA
WP_042315508.1\|1477254_1477635_+	hypothetical protein	NA	NA	NA	NA
WP_042315510.1\|1477683_1478556_+	hypothetical protein	NA	NA	NA	NA
WP_015757017.1\|1478806_1479196_+	hypothetical protein	NA	NA	NA	NA
1484820:1484836	attL	NA	NA	NA	NA
WP_015757018.1\|1485239_1486922_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015757019.1\|1487348_1488377_-\|integrase	tyrosine-type recombinase/integrase	U5Q0B8	Bacillus_phage	1.0e-10	25.4
WP_015757020.1\|1488366_1489338_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1493584:1493600	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1578187 : 1585409

Erysipelothrix_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015757100.1\|1578187_1579819_+	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	3.2e-94	38.8
WP_015757101.1\|1579787_1580687_+	recombinase family protein	Q6DMS5	Streptococcus_phage	1.4e-14	21.5
WP_015757102.1\|1580709_1582368_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	4.3e-123	46.2
WP_157863077.1\|1582435_1583737_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	3.1e-108	51.3
WP_015757104.1\|1583947_1584151_+	helix-turn-helix transcriptional regulator	A0A2K5B261	Erysipelothrix_phage	1.6e-19	73.1
WP_174260377.1\|1584191_1585409_+	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	5.5e-27	27.9

DBSCAN-SWA_9

1870608 : 1950755

Staphylococcus_phage(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157862885.1\|1870608_1870812_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_015757333.1\|1870875_1871511_+	hypothetical protein	NA	NA	NA	NA
WP_015757334.1\|1872124_1872550_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.6e-21	45.1
WP_015757335.1\|1872803_1874960_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_015757336.1\|1875110_1877660_+	alpha-glucan family phosphorylase	NA	NA	NA	NA
WP_015757337.1\|1877907_1878066_+	hypothetical protein	NA	NA	NA	NA
WP_042315596.1\|1878133_1878448_-	hypothetical protein	NA	NA	NA	NA
WP_015757339.1\|1878784_1880242_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_015757340.1\|1881083_1881416_+	hypothetical protein	NA	NA	NA	NA
WP_015757341.1\|1881460_1882009_-	hypothetical protein	NA	NA	NA	NA
WP_042316942.1\|1882181_1882703_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015757343.1\|1882692_1884087_+	hypothetical protein	NA	NA	NA	NA
WP_015757344.1\|1884116_1886381_+	hypothetical protein	NA	NA	NA	NA
WP_015757345.1\|1886377_1887298_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-26	33.0
WP_015757346.1\|1887300_1888137_+	ABC transporter permease	NA	NA	NA	NA
WP_015757347.1\|1888310_1889021_-	RloB domain-containing protein	NA	NA	NA	NA
WP_015757348.1\|1889020_1890400_-	ATP-binding protein	NA	NA	NA	NA
WP_157862887.1\|1891987_1892761_+	hypothetical protein	NA	NA	NA	NA
WP_015757353.1\|1893029_1893482_+	DUF188 domain-containing protein	NA	NA	NA	NA
WP_015757354.1\|1893541_1895368_+	translational GTPase TypA	A0A1S5SF82	Streptococcus_phage	5.8e-20	40.7
WP_015757356.1\|1895882_1896032_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_015757357.1\|1896637_1897633_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_015757358.1\|1897701_1899309_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_015757359.1\|1899432_1900083_+	thiamine diphosphokinase	NA	NA	NA	NA
WP_015757360.1\|1900196_1901144_+	HD domain-containing protein	NA	NA	NA	NA
WP_015757361.1\|1901248_1901545_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015757362.1\|1901576_1901957_-	DUF4363 family protein	NA	NA	NA	NA
WP_015757363.1\|1901970_1902645_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_015757364.1\|1902751_1903870_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_015757365.1\|1903953_1904808_-	hypothetical protein	NA	NA	NA	NA
WP_015757366.1\|1905052_1905883_+	nitrilase	NA	NA	NA	NA
WP_015757367.1\|1905939_1906290_-	DsrE family protein	NA	NA	NA	NA
WP_015757368.1\|1906386_1906902_-	N-acetyltransferase	NA	NA	NA	NA
WP_157863084.1\|1907376_1907886_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015757370.1\|1907885_1909064_+	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_015757371.1\|1909082_1909994_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.5e-32	35.7
WP_015757372.1\|1909990_1910824_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_015757373.1\|1910894_1911122_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_015757374.1\|1911235_1913221_-	rod shape-determining protein	NA	NA	NA	NA
WP_015757375.1\|1913437_1913917_+	hypothetical protein	NA	NA	NA	NA
WP_015757376.1\|1913998_1914328_-	hypothetical protein	NA	NA	NA	NA
WP_015757377.1\|1914469_1915255_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_015757378.1\|1915280_1917521_+	DNA topoisomerase III	A0A2P1EID3	Megavirus	3.1e-23	25.7
WP_174260379.1\|1923504_1924890_-	MFS transporter	NA	NA	NA	NA
WP_015757380.1\|1925641_1926382_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-19	26.8
WP_015757381.1\|1927646_1928951_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.4e-30	31.6
WP_015756162.1\|1931781_1933542_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015757384.1\|1934009_1934603_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_015757385.1\|1934691_1935165_+	hypothetical protein	NA	NA	NA	NA
WP_015757386.1\|1936433_1939598_+	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	2.5e-39	38.6
WP_015757387.1\|1939611_1940637_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_015757388.1\|1940636_1941437_+	AAA family ATPase	NA	NA	NA	NA
WP_042316953.1\|1941821_1941941_+	hypothetical protein	NA	NA	NA	NA
WP_042316955.1\|1943723_1944938_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_015757391.1\|1946601_1947348_+	hypothetical protein	NA	NA	NA	NA
WP_015757392.1\|1947360_1948458_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_015756032.1\|1949042_1950755_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1955156 : 2014273

Bacillus_phage(33.33%)

transposase,tail,integrase

attL 1939814:1939829|attR 1970880:1970895

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1939814:1939829	attL	NA	NA	NA	NA
WP_015757397.1\|1955156_1956971_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015757398.1\|1957698_1957845_+	hypothetical protein	NA	NA	NA	NA
WP_015757401.1\|1960095_1960509_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_015757402.1\|1960662_1961775_+\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	1.3e-38	35.3
WP_083773403.1\|1962824_1963166_+\|tail	phage tail family protein	NA	NA	NA	NA
WP_015757404.1\|1963168_1964569_+\|tail	phage tail protein	A0A0N9SIL8	Paenibacillus_phage	2.2e-64	40.3
WP_015757405.1\|1964579_1965833_+	hypothetical protein	NA	NA	NA	NA
WP_015757406.1\|1965845_1966658_+	hypothetical protein	NA	NA	NA	NA
WP_015756644.1\|1966684_1967818_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_015757407.1\|1967940_1970730_+	hypothetical protein	NA	NA	NA	NA
WP_015757408.1\|1970767_1971001_+	hypothetical protein	NA	NA	NA	NA
1970880:1970895	attR	NA	NA	NA	NA
WP_015757409.1\|1970993_1971620_+	N-acetylmuramoyl-L-alanine amidase	A0A1J0MS59	Bacillus_phage	2.1e-46	50.0
WP_015757410.1\|1971669_1971894_+	hypothetical protein	NA	NA	NA	NA
WP_015757411.1\|1972008_1972653_+	hypothetical protein	A0A0E3T7R5	Bacillus_phage	1.6e-25	51.6
WP_015757412.1\|1973207_1974341_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_174260362.1\|1974367_1974676_-	hypothetical protein	NA	NA	NA	NA
WP_015757413.1\|1974688_1975111_-	DUF3795 domain-containing protein	NA	NA	NA	NA
WP_015757414.1\|1975453_1975909_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015755906.1\|1976044_1977727_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015757415.1\|1977926_1978349_+	hypothetical protein	NA	NA	NA	NA
WP_015757417.1\|1978469_1979117_+	ATP-binding protein	A0A142F1P9	Bacillus_phage	1.4e-21	32.2
WP_015757418.1\|1979109_1980369_+	AAA family ATPase	NA	NA	NA	NA
WP_015757419.1\|1980400_1981219_+	prophage antirepressor	A0A290FZK7	Caldibacillus_phage	6.1e-30	37.7
WP_015757420.1\|1981211_1982162_+	toprim domain-containing protein	A0A0N9S7Y2	Paenibacillus_phage	4.6e-61	41.4
WP_015757421.1\|1982158_1982890_-	response regulator transcription factor	NA	NA	NA	NA
WP_157862893.1\|1982902_1984234_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_015757423.1\|1984560_1985121_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_015757424.1\|1985188_1985878_+	hypothetical protein	NA	NA	NA	NA
WP_042316979.1\|1985994_1988232_+	DNA polymerase I	A0A2H4J6W7	uncultured_Caudovirales_phage	5.0e-143	43.3
WP_015757426.1\|1988215_1989115_+	phage antirepressor KilAC domain-containing protein	M4ZRI7	Bacillus_phage	4.1e-35	37.6
WP_015757427.1\|1989118_1990021_+	hypothetical protein	A0A0N9SHN6	Paenibacillus_phage	4.5e-42	40.0
WP_015757428.1\|1990020_1990371_+	Holliday junction DNA helicase	NA	NA	NA	NA
WP_015757429.1\|1990390_1990858_+	radical SAM protein	NA	NA	NA	NA
WP_015757430.1\|1990835_1992740_+	anaerobic ribonucleoside-triphosphate reductase	H7BUX6	unidentified_phage	1.6e-65	27.8
WP_042316984.1\|1992798_1993308_+	dUTP diphosphatase	A0A142CJG3	Brazilian_marseillevirus	1.8e-27	46.7
WP_015757433.1\|1993407_1994136_+	cell wall hydrolase	A0A172JHR8	Bacillus_phage	2.6e-32	37.6
WP_015757434.1\|1994159_1994813_+	FAD-dependent thymidylate synthase	K9MCR9	Sulfolobus_virus	4.2e-13	32.4
WP_015757435.1\|1994855_1995314_-	hypothetical protein	NA	NA	NA	NA
WP_015757436.1\|1995531_1995804_+	hypothetical protein	NA	NA	NA	NA
WP_015757437.1\|1995751_1996270_+	hypothetical protein	A0A0N9SJZ0	Paenibacillus_phage	2.4e-32	46.5
WP_015757438.1\|1996270_1996639_+	RNA polymerase subunit sigma-28	NA	NA	NA	NA
WP_015757439.1\|1996625_1997000_+	hypothetical protein	NA	NA	NA	NA
WP_052292923.1\|1997001_1997331_+	hypothetical protein	A0A0K2CZE3	Paenibacillus_phage	1.6e-18	54.9
WP_052292924.1\|1997320_1997977_+	phage antirepressor KilAC domain-containing protein	A0A1P8CWY0	Bacillus_phage	3.1e-16	38.3
WP_015757441.1\|2000787_2001588_+	hypothetical protein	NA	NA	NA	NA
WP_015757442.1\|2003099_2003846_+	hypothetical protein	NA	NA	NA	NA
WP_157862895.1\|2004164_2004434_+	hypothetical protein	NA	NA	NA	NA
WP_042315621.1\|2005825_2006260_+	recombinase family protein	A0A1S5RFV4	Helicobacter_phage	7.8e-08	34.9
WP_015757445.1\|2006216_2007674_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_015757446.1\|2007938_2008799_+	hypothetical protein	NA	NA	NA	NA
WP_015757447.1\|2009032_2010835_+	DUF4153 domain-containing protein	NA	NA	NA	NA
WP_083773405.1\|2010962_2011094_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015756644.1\|2013139_2014273_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

2325598 : 2386951

Paenibacillus_phage(22.22%)

transposase,tail,integrase

attL 2367105:2367121|attR 2394717:2394733

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015757680.1\|2325598_2326057_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_015757681.1\|2326068_2326257_-	hypothetical protein	NA	NA	NA	NA
WP_015757682.1\|2326355_2326811_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174260363.1\|2326862_2327243_-	hypothetical protein	A0A0N9S7T7	Paenibacillus_phage	1.5e-39	63.9
WP_083773422.1\|2327320_2327605_-	hypothetical protein	NA	NA	NA	NA
WP_157863091.1\|2327741_2327963_+	helix-turn-helix domain-containing protein	A0A2I7SC34	Paenibacillus_phage	1.4e-10	45.3
WP_015757684.1\|2327949_2328276_+	hypothetical protein	NA	NA	NA	NA
WP_015757686.1\|2328769_2329261_+	N-acetyltransferase	NA	NA	NA	NA
WP_174260364.1\|2329302_2329446_-	hypothetical protein	NA	NA	NA	NA
WP_015757687.1\|2329763_2330369_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015757688.1\|2330553_2332029_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	3.8e-46	32.9
WP_157862917.1\|2332558_2332753_-	hypothetical protein	NA	NA	NA	NA
WP_015757690.1\|2333547_2334741_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_015757691.1\|2334787_2335213_-	EamA family transporter	NA	NA	NA	NA
WP_015757692.1\|2335362_2335842_-	hypothetical protein	NA	NA	NA	NA
WP_042315698.1\|2336310_2336865_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_015757693.1\|2337029_2337767_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_015757695.1\|2338129_2338363_-	hypothetical protein	NA	NA	NA	NA
WP_015757696.1\|2338400_2338868_-	hypothetical protein	NA	NA	NA	NA
WP_162013535.1\|2338792_2339206_-	hypothetical protein	NA	NA	NA	NA
WP_015757697.1\|2339423_2340035_-	hypothetical protein	NA	NA	NA	NA
WP_015757698.1\|2340163_2340658_-	hypothetical protein	NA	NA	NA	NA
WP_015757699.1\|2340650_2341184_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_015757700.1\|2341436_2342729_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_015757701.1\|2342719_2343064_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_042317119.1\|2343704_2343947_+	hypothetical protein	NA	NA	NA	NA
WP_162013536.1\|2344371_2346108_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_015757703.1\|2347039_2347441_+	hypothetical protein	NA	NA	NA	NA
WP_015757705.1\|2347626_2350395_-	response regulator	A0A1V0SGX0	Hokovirus	4.8e-42	28.8
WP_015757707.1\|2351768_2352326_+	hypothetical protein	NA	NA	NA	NA
WP_157863092.1\|2352533_2353469_-	diguanylate cyclase	A0A2K8I9Y5	Pseudomonas_phage	4.4e-08	37.9
WP_083773423.1\|2353564_2353693_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_015757709.1\|2353757_2354021_-	hypothetical protein	NA	NA	NA	NA
WP_015757711.1\|2356393_2356729_-	hypothetical protein	NA	NA	NA	NA
WP_015757712.1\|2356825_2357014_-	hypothetical protein	NA	NA	NA	NA
WP_157862919.1\|2357132_2357489_+	hypothetical protein	NA	NA	NA	NA
WP_015757714.1\|2357997_2360418_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.1e-13	30.4
WP_015757715.1\|2360982_2361588_-	hypothetical protein	NA	NA	NA	NA
WP_015757716.1\|2362757_2363984_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	7.7e-53	37.2
WP_015757718.1\|2364858_2366139_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.3e-138	60.9
WP_015757719.1\|2366158_2367679_-	dynamin family protein	NA	NA	NA	NA
2367105:2367121	attL	NA	NA	NA	NA
WP_015757720.1\|2368050_2368998_-	hypothetical protein	NA	NA	NA	NA
WP_015757721.1\|2370760_2372164_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	1.5e-84	38.4
WP_157863093.1\|2373191_2374625_-	hypothetical protein	NA	NA	NA	NA
WP_015757725.1\|2374930_2375659_-	hypothetical protein	NA	NA	NA	NA
WP_015757726.1\|2375665_2375845_-	hypothetical protein	NA	NA	NA	NA
WP_015757727.1\|2376063_2376378_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015757728.1\|2376364_2376637_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_015757729.1\|2376823_2377087_-	hypothetical protein	NA	NA	NA	NA
WP_015757730.1\|2377424_2377748_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015757731.1\|2377750_2377999_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_083773424.1\|2378222_2378495_-	hypothetical protein	NA	NA	NA	NA
WP_015757733.1\|2379542_2380676_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_042317125.1\|2381209_2381695_+	rubrerythrin	NA	NA	NA	NA
WP_015757736.1\|2382790_2384044_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015757737.1\|2384043_2385909_+	hypothetical protein	NA	NA	NA	NA
WP_015757738.1\|2385901_2386951_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2394717:2394733	attR	NA	NA	NA	NA

DBSCAN-SWA_12

2391921 : 2449701

Streptococcus_phage(15.38%)

tRNA,transposase,integrase

attL 2412403:2412462|attR 2416472:2416551

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756115.1\|2391921_2393736_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015757744.1\|2393874_2395074_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	1.5e-85	42.8
WP_015757745.1\|2395100_2395847_-	hypothetical protein	NA	NA	NA	NA
WP_015757746.1\|2396739_2397837_-	hypothetical protein	NA	NA	NA	NA
WP_015757747.1\|2397994_2398504_-	helix-turn-helix domain-containing protein	A0A1B0RXC6	Streptococcus_phage	2.1e-20	39.9
WP_015757748.1\|2398685_2398934_-	hypothetical protein	NA	NA	NA	NA
WP_015757018.1\|2399124_2400807_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015757749.1\|2400959_2402111_-	hypothetical protein	NA	NA	NA	NA
WP_015757750.1\|2402127_2403285_-	hypothetical protein	NA	NA	NA	NA
WP_015757751.1\|2403787_2405107_-	hypothetical protein	NA	NA	NA	NA
WP_015757752.1\|2405096_2406854_-	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	4.9e-16	26.3
WP_015757753.1\|2407185_2408478_-	recombinase family protein	E4ZFN9	Streptococcus_phage	1.1e-131	54.6
WP_015757755.1\|2411216_2412104_-	DUF4338 domain-containing protein	NA	NA	NA	NA
WP_042315718.1\|2412103_2412283_-\|transposase	transposase domain-containing protein	NA	NA	NA	NA
2412403:2412462	attL	NA	NA	NA	NA
WP_015757756.1\|2412485_2413523_-\|integrase	tyrosine-type recombinase/integrase	U5Q1D8	Bacillus_phage	5.6e-12	25.2
WP_015757757.1\|2413512_2414487_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015757758.1\|2414483_2416388_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_042315721.1\|2416483_2417827_-\|transposase	IS66 family transposase	NA	NA	NA	NA
2416472:2416551	attR	NA	NA	NA	NA
WP_157862923.1\|2417997_2418570_-	hypothetical protein	NA	NA	NA	NA
WP_015757761.1\|2418490_2419021_-	hypothetical protein	NA	NA	NA	NA
WP_015757762.1\|2419013_2419769_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_015757763.1\|2419761_2420112_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015757764.1\|2420234_2421611_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	7.3e-84	35.8
WP_015757765.1\|2421653_2422076_-	YaaR family protein	NA	NA	NA	NA
WP_015757766.1\|2422585_2424193_+	L-aspartate oxidase	NA	NA	NA	NA
WP_015757767.1\|2424210_2425047_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_015757768.1\|2425074_2426145_+	quinolinate synthase NadA	NA	NA	NA	NA
WP_015757769.1\|2426156_2426666_+	transcription repressor NadR	NA	NA	NA	NA
WP_015757770.1\|2426693_2427323_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_015757771.1\|2427408_2427726_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	1.9e-19	50.0
WP_015757772.1\|2427795_2427981_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_015757773.1\|2428003_2428177_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_015757774.1\|2428295_2429063_-	helix-turn-helix transcriptional regulator	A0A0R8VBU2	Thermobifida_phage	4.0e-07	50.8
WP_083773530.1\|2429133_2430720_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_015757776.1\|2430888_2432103_-	U32 family peptidase	Q6DW11	Phage_TP	2.9e-52	34.7
WP_015757777.1\|2432117_2433152_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_015757778.1\|2433413_2434775_-	VanW family protein	NA	NA	NA	NA
WP_015757779.1\|2434963_2435269_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_015757780.1\|2435345_2435765_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_042317135.1\|2435781_2436723_-	aldo/keto reductase	NA	NA	NA	NA
WP_015757782.1\|2436758_2437022_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_015757783.1\|2437091_2439728_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	5.9e-74	35.7
WP_015757784.1\|2440001_2440184_-	hypothetical protein	NA	NA	NA	NA
WP_015757785.1\|2440208_2440382_-	hypothetical protein	NA	NA	NA	NA
WP_015757786.1\|2440500_2441145_+	DUF2250 domain-containing protein	NA	NA	NA	NA
WP_015757787.1\|2441219_2442308_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_015757788.1\|2442317_2442692_-	Fe-S cluster assembly scaffold protein NifU	A0A2H4N7M4	Lake_Baikal_phage	1.5e-31	55.6
WP_015757789.1\|2442684_2443893_-	cysteine desulfurase NifS	A0A141ZJV0	Faustovirus	4.6e-42	29.8
WP_015757790.1\|2443928_2444357_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_015757791.1\|2444592_2444883_-	transcriptional regulator	NA	NA	NA	NA
WP_042317141.1\|2444991_2445324_-	thioredoxin	A0A218MMB7	uncultured_virus	6.6e-07	34.3
WP_015757793.1\|2445440_2446175_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_015757794.1\|2446587_2448414_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_015757795.1\|2448441_2449701_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_13

2592686 : 2602214

Bacillus_phage(42.86%)

integrase

attL 2594588:2594600|attR 2601172:2601184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157863100.1\|2592686_2595347_+	DNA polymerase I	F8WQ35	Bacillus_phage	1.6e-55	35.0
2594588:2594600	attL	NA	NA	NA	NA
WP_015757928.1\|2595359_2596187_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	5.4e-26	28.3
WP_015757929.1\|2596275_2596929_+	sporulation membrane protein YtaF	NA	NA	NA	NA
WP_042317164.1\|2597038_2597638_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_015757931.1\|2597704_2598286_+	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	2.8e-13	39.9
WP_015757932.1\|2598568_2599576_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	6.3e-53	35.4
WP_015757933.1\|2599569_2600541_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	5.9e-48	36.6
WP_015757934.1\|2600580_2601438_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	3.3e-10	32.6
2601172:2601184	attR	NA	NA	NA	NA
WP_052292940.1\|2601434_2601776_-	ParA family protein	NA	NA	NA	NA
WP_052292941.1\|2601794_2602214_-	ParA family protein	Q8JL10	Natrialba_phage	3.4e-16	38.6

DBSCAN-SWA_14

2638122 : 2677533

Geobacillus_virus(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756644.1\|2638122_2639256_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_042315766.1\|2639283_2639604_-	hypothetical protein	NA	NA	NA	NA
WP_015757981.1\|2639640_2639823_-	hypothetical protein	NA	NA	NA	NA
WP_015757983.1\|2639963_2640449_-	macro domain-containing protein	A0A0H3V0V8	Geobacillus_virus	5.8e-20	39.4
WP_015757984.1\|2640518_2640884_-	hypothetical protein	NA	NA	NA	NA
WP_157862937.1\|2640861_2642325_-	hypothetical protein	NA	NA	NA	NA
WP_157862938.1\|2642422_2642875_-	pilus assembly protein	NA	NA	NA	NA
WP_015757987.1\|2642816_2643350_-	prepilin peptidase	NA	NA	NA	NA
WP_015757988.1\|2643327_2643510_-	hypothetical protein	NA	NA	NA	NA
WP_015757989.1\|2643528_2643720_-	hypothetical protein	NA	NA	NA	NA
WP_015757990.1\|2643804_2643996_-	hypothetical protein	NA	NA	NA	NA
WP_015757991.1\|2644080_2644263_-	hypothetical protein	NA	NA	NA	NA
WP_015757992.1\|2644288_2644432_-	hypothetical protein	NA	NA	NA	NA
WP_015757993.1\|2644455_2645340_-	type II secretion system F family protein	NA	NA	NA	NA
WP_015757994.1\|2645353_2646274_-	type II secretion system F family protein	NA	NA	NA	NA
WP_083773535.1\|2646276_2647470_-	CpaF family protein	NA	NA	NA	NA
WP_042315769.1\|2647678_2648044_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_015757996.1\|2648044_2649295_-	AAA family ATPase	NA	NA	NA	NA
WP_015757997.1\|2649302_2650046_-	Flp pilus assembly protein CpaB	NA	NA	NA	NA
WP_157862940.1\|2650059_2650428_-	hypothetical protein	NA	NA	NA	NA
WP_015757999.1\|2650678_2651101_-	Tad domain-containing protein	NA	NA	NA	NA
WP_015758000.1\|2651935_2652532_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015758001.1\|2652572_2654933_-	hypothetical protein	NA	NA	NA	NA
WP_015758002.1\|2654933_2655896_-	copper amine oxidase N-terminal domain-containing protein	NA	NA	NA	NA
WP_015756467.1\|2656441_2657668_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.6e-53	37.5
WP_015758003.1\|2658640_2659051_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_015758004.1\|2659034_2659307_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_015756162.1\|2659825_2661586_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_083773433.1\|2661888_2662533_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_015758006.1\|2662607_2664542_-	chromosome partitioning ATPase-like protein	NA	NA	NA	NA
WP_015758007.1\|2664566_2665439_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	2.2e-17	49.5
WP_015758008.1\|2666832_2667558_-	hypothetical protein	NA	NA	NA	NA
WP_015758009.1\|2667557_2669003_-	hypothetical protein	NA	NA	NA	NA
WP_015758010.1\|2668995_2671374_-	ATP-binding protein	NA	NA	NA	NA
WP_015758011.1\|2671374_2671752_-	conjugal transfer protein	NA	NA	NA	NA
WP_015758012.1\|2671801_2672092_-	hypothetical protein	NA	NA	NA	NA
WP_015758013.1\|2672107_2673019_-	conjugal transfer protein	NA	NA	NA	NA
WP_042315782.1\|2673018_2673450_-	hypothetical protein	NA	NA	NA	NA
WP_015756644.1\|2673598_2674732_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_042315785.1\|2674759_2675410_-	hypothetical protein	NA	NA	NA	NA
WP_042315787.1\|2675442_2675835_-	hypothetical protein	NA	NA	NA	NA
WP_015758015.1\|2676129_2677533_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	3.2e-87	39.1

DBSCAN-SWA_15

3061743 : 3086483

Bacteriophage(33.33%)

protease,transposase,tail,integrase

attL 3074134:3074150|attR 3097270:3097286

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015758338.1\|3061743_3063066_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	3.5e-59	36.0
WP_015758339.1\|3063379_3063859_+	DUF456 domain-containing protein	NA	NA	NA	NA
WP_015758340.1\|3064025_3064991_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_015758341.1\|3065035_3065281_+\|tail	tail fiber protein	C4MYW8	Escherichia_phage	8.2e-07	48.2
WP_015758342.1\|3065302_3065557_+\|tail	tail fiber protein	NA	NA	NA	NA
WP_015758343.1\|3065747_3065990_+\|tail	tail fiber protein	NA	NA	NA	NA
WP_015758344.1\|3066031_3067102_+	cadherin-like beta sandwich domain-containing protein	NA	NA	NA	NA
WP_015758345.1\|3067134_3072153_+	cadherin-like beta sandwich domain-containing protein	NA	NA	NA	NA
WP_052292952.1\|3072337_3073123_+	hypothetical protein	NA	NA	NA	NA
WP_015758348.1\|3073119_3073383_+	PqqD family protein	NA	NA	NA	NA
WP_157862967.1\|3073375_3073822_+	hypothetical protein	NA	NA	NA	NA
WP_015758350.1\|3073845_3075039_+	nucleotidyltransferase family protein	NA	NA	NA	NA
3074134:3074150	attL	NA	NA	NA	NA
WP_015758351.1\|3075530_3076550_-	DUF4065 domain-containing protein	A0A0N9SGM1	Paenibacillus_phage	4.6e-27	48.6
WP_015758352.1\|3076563_3076815_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_083773454.1\|3078552_3078747_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_042315880.1\|3078861_3079095_-	hypothetical protein	NA	NA	NA	NA
WP_015758354.1\|3079240_3079693_-	hypothetical protein	NA	NA	NA	NA
WP_015758355.1\|3079668_3083484_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_015758356.1\|3083819_3086483_+\|protease	protease complex subunit PrcB family protein	NA	NA	NA	NA
3097270:3097286	attR	NA	NA	NA	NA

DBSCAN-SWA_16

3533341 : 3598792

uncultured_virus(16.67%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015758750.1\|3533341_3534214_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_015758751.1\|3534226_3534997_-	M23 family metallopeptidase	S5VY01	Leptospira_phage	1.6e-08	37.6
WP_015758752.1\|3535064_3535727_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_015758753.1\|3535812_3536955_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_015758754.1\|3537108_3537384_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_015758755.1\|3537426_3538221_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_042317372.1\|3538257_3538647_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_015758757.1\|3538871_3540857_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_015758758.1\|3540874_3541375_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_042316015.1\|3541371_3542238_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_015758760.1\|3542259_3543291_-	rod shape-determining protein	NA	NA	NA	NA
WP_042317374.1\|3543332_3543992_-	DNA repair protein RadC	NA	NA	NA	NA
WP_015758762.1\|3544048_3544624_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_015758763.1\|3544640_3544898_-	DUF4321 domain-containing protein	NA	NA	NA	NA
WP_015758764.1\|3545016_3545475_-	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	6.2e-24	38.9
WP_015758765.1\|3545544_3546552_-	sodium:calcium antiporter	NA	NA	NA	NA
WP_015758766.1\|3546999_3548289_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_015758767.1\|3549287_3549431_+	hypothetical protein	NA	NA	NA	NA
WP_015758768.1\|3549488_3552134_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.4e-176	42.1
WP_015758769.1\|3552439_3552886_-	TIGR04086 family membrane protein	NA	NA	NA	NA
WP_015758770.1\|3553015_3554110_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_042317375.1\|3554180_3554684_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_015758772.1\|3554984_3555590_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_015758773.1\|3555586_3558007_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	9.2e-175	44.2
WP_015758774.1\|3558269_3559997_-\|protease	ATP-dependent protease LonB	A0A076FMQ5	Aureococcus_anophage	6.7e-10	25.2
WP_015758775.1\|3560106_3561357_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-147	63.0
WP_015758776.1\|3561580_3562888_-	trigger factor	NA	NA	NA	NA
WP_015758777.1\|3563540_3564167_-	cell wall hydrolase	A0A0E3XAL9	Bacillus_phage	2.4e-26	39.1
WP_015758778.1\|3564302_3564551_-	hypothetical protein	NA	NA	NA	NA
WP_015758779.1\|3564625_3566437_+	adenine deaminase	NA	NA	NA	NA
WP_015758780.1\|3566547_3567639_-	anti-sigma factor domain-containing protein	NA	NA	NA	NA
WP_015758781.1\|3567641_3568526_-	RNA polymerase sigma-I factor	NA	NA	NA	NA
WP_015758782.1\|3568675_3570769_-	beta-propeller domain-containing protein	NA	NA	NA	NA
WP_015758783.1\|3570894_3571479_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_015758784.1\|3571494_3572409_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	1.1e-75	51.0
WP_015758785.1\|3572497_3573580_-	endospore germination permease	NA	NA	NA	NA
WP_015758786.1\|3573831_3575391_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.9e-12	66.2
WP_015758787.1\|3575905_3576175_+	DUF1540 domain-containing protein	NA	NA	NA	NA
WP_015758788.1\|3576266_3576518_+	hypothetical protein	NA	NA	NA	NA
WP_157862990.1\|3576901_3577075_-	hypothetical protein	NA	NA	NA	NA
WP_015758791.1\|3577432_3578674_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_015758792.1\|3579079_3580720_-	chaperonin GroEL	A0A219YK78	uncultured_virus	3.6e-162	59.1
WP_015758793.1\|3580779_3581064_-	co-chaperone GroES	A0A221S322	uncultured_virus	2.7e-17	44.6
WP_015758794.1\|3581452_3582235_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_042316027.1\|3582312_3583383_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_157863128.1\|3583366_3584584_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA
WP_015758797.1\|3584954_3586484_+	coproporphyrinogen dehydrogenase HemZ	NA	NA	NA	NA
WP_015758798.1\|3586995_3589839_+	CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein	NA	NA	NA	NA
WP_015758799.1\|3590006_3590180_+	hypothetical protein	NA	NA	NA	NA
WP_015758800.1\|3590216_3590945_-	hypothetical protein	NA	NA	NA	NA
WP_015758802.1\|3591922_3592222_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_157863129.1\|3592485_3592884_+	hypothetical protein	NA	NA	NA	NA
WP_015758804.1\|3592992_3594315_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	5.9e-59	36.0
WP_157862991.1\|3595124_3595331_+	hypothetical protein	NA	NA	NA	NA
WP_015758806.1\|3595284_3595839_-	hypothetical protein	NA	NA	NA	NA
WP_042316038.1\|3597246_3597669_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157862992.1\|3597886_3598792_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_17

3849480 : 3868136

Brevibacillus_phage(33.33%)

transposase,capsid,integrase

attL 3849232:3849276|attR 3869561:3869605

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3849232:3849276	attL	NA	NA	NA	NA
WP_015759058.1\|3849480_3850650_-\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	1.7e-81	39.2
WP_015759059.1\|3850649_3851606_-	hypothetical protein	NA	NA	NA	NA
WP_015759060.1\|3851747_3851948_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015759061.1\|3851948_3852215_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015759062.1\|3852267_3853281_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_015759063.1\|3853404_3853980_+	hypothetical protein	Q0H230	Geobacillus_phage	1.3e-07	34.0
WP_015759064.1\|3853976_3854471_+	hypothetical protein	NA	NA	NA	NA
WP_015759065.1\|3854759_3855002_-	hypothetical protein	NA	NA	NA	NA
WP_015759066.1\|3855032_3855191_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_157863134.1\|3855413_3855602_+	hypothetical protein	NA	NA	NA	NA
WP_015759068.1\|3855705_3856299_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_015759069.1\|3856301_3856670_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_015759070.1\|3856788_3856944_-	hypothetical protein	NA	NA	NA	NA
WP_015759071.1\|3856955_3857159_-	hypothetical protein	NA	NA	NA	NA
WP_015759072.1\|3857171_3857411_-	hypothetical protein	NA	NA	NA	NA
WP_015759073.1\|3857556_3857838_-	hypothetical protein	NA	NA	NA	NA
WP_015759074.1\|3857854_3858148_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015759075.1\|3858163_3858424_-	hypothetical protein	NA	NA	NA	NA
WP_015759076.1\|3858450_3858651_-	helix-turn-helix transcriptional regulator	S5M9U8	Brevibacillus_phage	1.0e-07	48.4
WP_042316192.1\|3858810_3859122_+	helix-turn-helix transcriptional regulator	A0A1Q1PVX8	Staphylococcus_phage	2.1e-07	42.5
WP_015756467.1\|3859457_3860684_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.6e-53	37.5
WP_015759078.1\|3861512_3861791_+	hypothetical protein	NA	NA	NA	NA
WP_015759079.1\|3861825_3861984_-	hypothetical protein	NA	NA	NA	NA
WP_015759080.1\|3861989_3862262_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015759081.1\|3862442_3862844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015759082.1\|3862866_3863025_+	hypothetical protein	NA	NA	NA	NA
WP_015759083.1\|3863021_3863492_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_015759084.1\|3863525_3863879_+	hypothetical protein	NA	NA	NA	NA
WP_169306038.1\|3864308_3864641_+	hypothetical protein	NA	NA	NA	NA
WP_015759086.1\|3864752_3865865_+\|integrase	site-specific integrase	A0A0U3U8Y8	Bacillus_phage	1.5e-47	36.3
WP_015759087.1\|3865939_3867178_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015759088.1\|3867170_3868136_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3869561:3869605	attR	NA	NA	NA	NA

DBSCAN-SWA_18

3967513 : 4038690

Thermus_phage(21.43%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015759182.1\|3967513_3969211_-\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	9.6e-187	58.2
WP_015759183.1\|3969588_3970161_+	HPP family protein	NA	NA	NA	NA
WP_015759184.1\|3970176_3970416_-	hypothetical protein	NA	NA	NA	NA
WP_015759185.1\|3970620_3970944_+	DUF1992 domain-containing protein	NA	NA	NA	NA
WP_015759186.1\|3970945_3971752_-	ABC transporter permease	NA	NA	NA	NA
WP_015759187.1\|3971860_3972832_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-22	30.2
WP_015759188.1\|3973628_3973841_+	hypothetical protein	NA	NA	NA	NA
WP_015759189.1\|3974203_3975397_-	CZB domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.9e-12	35.4
WP_083773496.1\|3976092_3976353_-	signal peptidase I	NA	NA	NA	NA
WP_042316215.1\|3976349_3977552_-	RNA-splicing ligase RtcB	A0A223LGY9	Bacillus_phage	1.1e-123	57.0
WP_015759191.1\|3977969_3978572_-	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_015759192.1\|3978830_3979922_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A068A1P5	Thermus_phage	8.4e-59	37.8
WP_015759193.1\|3979927_3980332_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-51	72.7
WP_083773497.1\|3980533_3980806_+	ATP-binding protein	NA	NA	NA	NA
WP_015756151.1\|3980927_3982742_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_042316217.1\|3983045_3983300_-	hypothetical protein	NA	NA	NA	NA
WP_015759196.1\|3984402_3985383_-	HNH endonuclease	NA	NA	NA	NA
WP_162013543.1\|3985407_3988098_-	DEAD/DEAH box helicase	A0A2K9L021	Tupanvirus	1.1e-06	23.4
WP_015759198.1\|3988724_3990374_+	hypothetical protein	NA	NA	NA	NA
WP_015759200.1\|3996786_3997878_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A068A1P5	Thermus_phage	1.9e-55	36.1
WP_015759202.1\|3998282_3998711_+	universal stress protein	NA	NA	NA	NA
WP_157863140.1\|3998967_3999873_+	delta-lactam-biosynthetic de-N-acetylase	NA	NA	NA	NA
WP_042317457.1\|3999992_4000748_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	5.9e-11	26.5
WP_015759205.1\|4000725_4001514_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.2e-11	25.3
WP_015759206.1\|4001554_4002541_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_042317458.1\|4002567_4003404_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_015759208.1\|4003487_4004672_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015759209.1\|4005557_4006742_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015759210.1\|4006881_4007565_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_042317459.1\|4007604_4008789_-	lysophospholipid transporter LplT	NA	NA	NA	NA
WP_015759212.1\|4008865_4010968_-	AMP-binding protein	NA	NA	NA	NA
WP_015759213.1\|4011061_4011634_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015759214.1\|4011928_4012984_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_015759215.1\|4013121_4014999_-	iron hydrogenase small subunit	NA	NA	NA	NA
WP_015759216.1\|4014958_4016992_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_015759217.1\|4016975_4017644_-	NAD(P)H-dependent oxidoreductase subunit E	NA	NA	NA	NA
WP_015759218.1\|4017852_4018317_+	hypothetical protein	NA	NA	NA	NA
WP_015759219.1\|4018493_4019588_+	hypothetical protein	A0A2H4JEI4	uncultured_Caudovirales_phage	4.4e-07	22.3
WP_015759220.1\|4019724_4022451_-	PAS domain-containing protein	NA	NA	NA	NA
WP_015759221.1\|4022661_4023330_-	hypothetical protein	NA	NA	NA	NA
WP_015759222.1\|4023451_4023838_-	hypothetical protein	NA	NA	NA	NA
WP_015759223.1\|4024136_4024397_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_015759224.1\|4024412_4025201_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_015759225.1\|4025197_4026586_+	ferrous iron transporter B	NA	NA	NA	NA
WP_015759226.1\|4026825_4028181_+	hypothetical protein	NA	NA	NA	NA
WP_015759227.1\|4028173_4028905_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_157863013.1\|4028958_4029210_-	hypothetical protein	NA	NA	NA	NA
WP_015759229.1\|4029514_4030642_+	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_083773499.1\|4030769_4033496_-	pyruvate, phosphate dikinase	A0A1V0SGR7	Hokovirus	1.5e-35	33.7
WP_015759231.1\|4033502_4034132_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_042317465.1\|4034373_4035303_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015759233.1\|4035975_4036413_+	universal stress protein	NA	NA	NA	NA
WP_015758955.1\|4037188_4038280_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A068A1P5	Thermus_phage	3.2e-58	37.5
WP_015756076.1\|4038285_4038690_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	5.3e-51	72.0

DBSCAN-SWA_19

4042709 : 4092138

Paenibacillus_phage(31.82%)

portal,terminase,transposase,integrase

attL 4066433:4066492|attR 4098152:4098215

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015756032.1\|4042709_4044422_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_042316228.1\|4044527_4044719_-	hypothetical protein	NA	NA	NA	NA
WP_042317466.1\|4044909_4046298_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.5e-113	44.5
WP_157863014.1\|4048485_4049754_-	diguanylate cyclase	NA	NA	NA	NA
WP_157863015.1\|4050199_4050481_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_052292971.1\|4050509_4050857_+	hypothetical protein	NA	NA	NA	NA
WP_157863016.1\|4051132_4051381_+	hypothetical protein	NA	NA	NA	NA
WP_015759242.1\|4052168_4052330_+	hypothetical protein	NA	NA	NA	NA
WP_015759243.1\|4052374_4052728_-	DUF2680 domain-containing protein	NA	NA	NA	NA
WP_015759244.1\|4052901_4053102_-	hypothetical protein	NA	NA	NA	NA
WP_162013544.1\|4053320_4053518_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_162013545.1\|4053537_4053738_-	hypothetical protein	S5MNM1	Brevibacillus_phage	1.0e-15	59.1
WP_015759246.1\|4053840_4054188_-	hypothetical protein	NA	NA	NA	NA
WP_015759247.1\|4054493_4054739_+	toxin HicA	NA	NA	NA	NA
WP_015759248.1\|4054731_4055097_+	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	3.8e-24	51.3
WP_042316237.1\|4055856_4056330_+	recombinase zinc beta ribbon domain-containing protein	NA	NA	NA	NA
WP_042316239.1\|4056372_4056648_-	hypothetical protein	NA	NA	NA	NA
WP_015759249.1\|4056958_4057123_-	hypothetical protein	A0A2H4J2N9	uncultured_Caudovirales_phage	2.6e-09	61.8
WP_015759250.1\|4057262_4058414_+	ImmA/IrrE family metallo-endopeptidase	A0A0F6WBJ9	Vibrio_phage	3.0e-06	32.7
WP_042316241.1\|4058418_4058922_+	hypothetical protein	NA	NA	NA	NA
WP_015759252.1\|4059859_4060270_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A0H3V0P8	Geobacillus_virus	2.8e-23	43.5
WP_042316242.1\|4062498_4063359_-	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	2.2e-70	52.3
WP_015759256.1\|4063458_4063629_-	hypothetical protein	NA	NA	NA	NA
WP_015759257.1\|4063661_4064126_-	hypothetical protein	NA	NA	NA	NA
WP_015759258.1\|4064122_4064893_-	hypothetical protein	NA	NA	NA	NA
WP_157863141.1\|4064952_4065543_-	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	3.0e-26	47.9
WP_015759260.1\|4065621_4066254_-	recombinase zinc beta ribbon domain-containing protein	NA	NA	NA	NA
4066433:4066492	attL	NA	NA	NA	NA
WP_015759261.1\|4066831_4067320_+	hypothetical protein	NA	NA	NA	NA
WP_015759263.1\|4067476_4067869_-	hypothetical protein	A0A0N7GFF4	Paenibacillus_phage	4.4e-10	39.5
WP_015759264.1\|4067837_4068227_-	RNA polymerase subunit sigma-28	NA	NA	NA	NA
WP_157863017.1\|4068177_4068804_-	AAA family ATPase	A0A0N9SJZ0	Paenibacillus_phage	1.1e-31	43.0
WP_015759267.1\|4068980_4069514_-	hypothetical protein	NA	NA	NA	NA
WP_015759268.1\|4069657_4069879_+	helix-turn-helix transcriptional regulator	A0A076G7N2	Bacillus_phage	7.7e-12	56.5
WP_015759269.1\|4069964_4070474_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_015759270.1\|4070508_4071159_-	FAD-dependent thymidylate synthase	Q684F8	Sulfolobus_virus	3.5e-12	31.4
WP_157863142.1\|4071178_4071691_-	cell wall hydrolase	U5PWL4	Bacillus_phage	5.3e-24	50.9
WP_015758390.1\|4071710_4073474_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_042316249.1\|4073637_4073901_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_015759273.1\|4074006_4074498_-	dUTP diphosphatase	A0A1S5XYX0	Kurlavirus	7.6e-28	47.6
WP_015759275.1\|4076966_4077323_+	hypothetical protein	NA	NA	NA	NA
WP_015759276.1\|4077317_4078202_-	type IV secretion protein Rhs	A0A0N9SJR1	Paenibacillus_phage	3.1e-43	35.8
WP_015759277.1\|4078201_4079668_-\|portal	phage portal protein	A0A0N7GFE4	Paenibacillus_phage	1.7e-152	59.7
WP_157863143.1\|4079708_4081418_-\|terminase	phage terminase large subunit	A0A0N9RZA7	Paenibacillus_phage	1.7e-146	51.6
WP_015759279.1\|4081557_4082001_-	hypothetical protein	NA	NA	NA	NA
WP_015759280.1\|4081978_4082470_-	DUF4065 domain-containing protein	A0A0N9SGM1	Paenibacillus_phage	3.7e-22	36.8
WP_015759281.1\|4082564_4083023_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_042316253.1\|4083138_4083414_-	hypothetical protein	NA	NA	NA	NA
WP_015759283.1\|4083487_4084351_-	amidoligase family protein	A0A218KCI6	Bacillus_phage	6.2e-41	37.8
WP_042317473.1\|4084497_4085859_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	1.0e-42	44.9
WP_015759285.1\|4085978_4086476_-	hypothetical protein	NA	NA	NA	NA
WP_015759286.1\|4086581_4087469_-\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	8.4e-41	33.0
WP_157863144.1\|4087596_4088001_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_015759288.1\|4089710_4090940_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_015759289.1\|4091088_4092138_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	1.1e-10	24.1
4098152:4098215	attR	NA	NA	NA	NA

DBSCAN-SWA_20

4192318 : 4263172

Tupanvirus(30.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042316275.1\|4192318_4192531_+\|transposase	transposase	NA	NA	NA	NA
WP_015759370.1\|4192908_4193094_+	hypothetical protein	NA	NA	NA	NA
WP_042316278.1\|4193280_4193487_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_015759371.1\|4193741_4193948_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015759372.1\|4194167_4194392_+	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_015759373.1\|4194451_4194673_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_015759374.1\|4194791_4194983_+	YvrJ family protein	NA	NA	NA	NA
WP_015759376.1\|4195438_4196437_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_157863149.1\|4196544_4196745_-	hypothetical protein	NA	NA	NA	NA
WP_015759377.1\|4197018_4197231_-	YgiT-type zinc finger protein	NA	NA	NA	NA
WP_015759378.1\|4197302_4197599_-	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_157863020.1\|4198097_4198433_-	HNH endonuclease	NA	NA	NA	NA
WP_015759379.1\|4199954_4201202_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.3e-31	32.1
WP_015759380.1\|4201268_4201409_-	hypothetical protein	NA	NA	NA	NA
WP_015759383.1\|4203380_4203665_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	1.2e-06	37.5
WP_015759384.1\|4203657_4204023_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_157863021.1\|4204167_4204287_-\|transposase	PD-(D/E)XK nuclease family transposase	NA	NA	NA	NA
WP_015759385.1\|4204436_4204685_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_015759387.1\|4205186_4206209_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_015759388.1\|4206350_4208597_-	YifB family Mg chelatase-like AAA ATPase	S6BFL3	Thermus_phage	1.7e-21	33.3
WP_042316282.1\|4208623_4209193_-\|transposase	transposase	NA	NA	NA	NA
WP_015759389.1\|4209850_4210015_-	hypothetical protein	NA	NA	NA	NA
WP_157863150.1\|4211011_4211329_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_157863022.1\|4211480_4211735_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_052292977.1\|4212960_4213605_-	maturase	NA	NA	NA	NA
WP_083773546.1\|4213886_4214564_-	hypothetical protein	NA	NA	NA	NA
WP_015756032.1\|4215284_4216997_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_042316287.1\|4217903_4218536_-	hypothetical protein	NA	NA	NA	NA
WP_015759394.1\|4218971_4219235_+	hypothetical protein	NA	NA	NA	NA
WP_015759395.1\|4219231_4219606_+\|protease	clan AA aspartic protease	NA	NA	NA	NA
WP_015759389.1\|4220466_4220631_-	hypothetical protein	NA	NA	NA	NA
WP_015759397.1\|4221440_4221929_-	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_015759398.1\|4221912_4222209_-	UPF0175 family protein	NA	NA	NA	NA
WP_015759399.1\|4222683_4222974_+	hypothetical protein	NA	NA	NA	NA
WP_042316291.1\|4223050_4223230_+	hypothetical protein	NA	NA	NA	NA
WP_015759400.1\|4224402_4224888_+	hypothetical protein	NA	NA	NA	NA
WP_052292978.1\|4225157_4225349_-	hypothetical protein	NA	NA	NA	NA
WP_015759403.1\|4225955_4226180_+	YvrJ family protein	NA	NA	NA	NA
WP_015759404.1\|4226845_4227241_+	hypothetical protein	NA	NA	NA	NA
WP_015759405.1\|4227243_4227540_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_157863151.1\|4227690_4227924_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_015759407.1\|4227965_4228361_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_015759408.1\|4229392_4230391_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_015759409.1\|4230548_4230998_-	hypothetical protein	NA	NA	NA	NA
WP_015759410.1\|4231352_4232366_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.2e-98	53.2
WP_015759411.1\|4233052_4233520_-	PIN domain-containing protein	NA	NA	NA	NA
WP_015759389.1\|4233528_4233693_-	hypothetical protein	NA	NA	NA	NA
WP_015759412.1\|4236190_4236589_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_015759413.1\|4236555_4236888_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_015759414.1\|4237104_4237428_-	UPF0175 family protein	NA	NA	NA	NA
WP_157863023.1\|4237531_4238002_-	hypothetical protein	NA	NA	NA	NA
WP_015759416.1\|4238038_4238974_-\|transposase	transposase	NA	NA	NA	NA
WP_015759417.1\|4238966_4239287_-	hypothetical protein	NA	NA	NA	NA
WP_015759418.1\|4240186_4241209_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_087943748.1\|4241350_4242451_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	9.7e-23	33.8
WP_015759420.1\|4242456_4244001_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_042316293.1\|4244027_4244597_-\|transposase	transposase	NA	NA	NA	NA
WP_157863024.1\|4245525_4245765_+	hypothetical protein	NA	NA	NA	NA
WP_015759422.1\|4246388_4246541_-	hypothetical protein	NA	NA	NA	NA
WP_015759423.1\|4247240_4248617_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	5.7e-89	42.2
WP_015759424.1\|4248873_4250379_-	copper amine oxidase domain-containing protein	NA	NA	NA	NA
WP_015759425.1\|4250608_4252447_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	7.1e-26	26.4
WP_015759427.1\|4252804_4253818_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.8e-98	52.6
WP_015759428.1\|4254004_4255381_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.4e-89	43.1
WP_015759429.1\|4255648_4256443_-	PHP domain-containing protein	NA	NA	NA	NA
WP_015759430.1\|4256461_4257100_-	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	2.9e-27	41.5
WP_015759432.1\|4257721_4257985_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_157863025.1\|4258045_4258576_+\|transposase	transposase	NA	NA	NA	NA
WP_052292979.1\|4258569_4259358_+\|transposase	transposase	NA	NA	NA	NA
WP_015759434.1\|4259911_4261204_-	flippase	NA	NA	NA	NA
WP_083773509.1\|4262887_4263172_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_21

4351655 : 4359673

Catovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015759512.1\|4351655_4352810_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	5.8e-26	30.6
WP_015759513.1\|4353038_4353350_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_015759514.1\|4353484_4353949_-	ComE operon protein 2	A0A0N9QQ67	Chrysochromulina_ericina_virus	1.3e-29	48.5
WP_015759515.1\|4353964_4355206_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.3e-97	53.8
WP_015759516.1\|4355233_4355683_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_015759517.1\|4355783_4356254_-	low molecular weight protein arginine phosphatase	A0A2H4PQT9	Staphylococcus_phage	2.7e-06	36.9
WP_015759518.1\|4356275_4356821_-	manganese efflux pump	NA	NA	NA	NA
WP_042316325.1\|4356941_4357979_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	1.5e-44	36.9
WP_015759520.1\|4358025_4358883_-	metal ABC transporter permease	NA	NA	NA	NA
WP_015759521.1\|4358920_4359673_-	metal ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	5.1e-15	28.0

DBSCAN-SWA_22

4389056 : 4427894

Bacillus_phage(65.52%)

terminase,transposase,plate,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015759551.1\|4389056_4391054_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A0N7ACC7	Bacillus_phage	8.2e-145	44.3
WP_015759552.1\|4391066_4391225_+	hypothetical protein	NA	NA	NA	NA
WP_015759553.1\|4391249_4392182_+	AAA family ATPase	A0A0N7ACA6	Bacillus_phage	1.1e-67	47.2
WP_015759554.1\|4392368_4392881_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_015759555.1\|4392911_4393343_+	hypothetical protein	A0A0M4U437	Ralstonia_phage	5.9e-16	36.9
WP_015759556.1\|4393433_4393718_+	hypothetical protein	NA	NA	NA	NA
WP_157863030.1\|4393764_4394154_+	hypothetical protein	NA	NA	NA	NA
WP_015759557.1\|4394062_4394848_+	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	6.5e-21	37.9
WP_015759558.1\|4394875_4395217_+	Mor transcription activator domain-containing protein	NA	NA	NA	NA
WP_015759559.1\|4395322_4395772_+	hypothetical protein	NA	NA	NA	NA
WP_015759560.1\|4395815_4396142_+	hypothetical protein	NA	NA	NA	NA
WP_015759561.1\|4396141_4396483_+	hypothetical protein	NA	NA	NA	NA
WP_015759562.1\|4396495_4397080_+	DUF3486 family protein	A0A2H4JAV3	uncultured_Caudovirales_phage	8.8e-15	30.7
WP_015759563.1\|4397064_4397559_+	antiterminator LoaP	NA	NA	NA	NA
WP_042316336.1\|4397860_4398439_+	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	1.6e-32	44.6
WP_015759565.1\|4398481_4400266_+\|terminase	phage terminase large subunit	A0A2H4JE58	uncultured_Caudovirales_phage	8.3e-189	58.8
WP_015759566.1\|4400271_4401798_+\|portal	phage portal protein	A0A0A8WI73	Clostridium_phage	1.1e-157	56.2
WP_015759567.1\|4401797_4403669_+	hypothetical protein	A0A0N7ACI5	Bacillus_phage	4.2e-74	43.6
WP_015759568.1\|4403665_4403980_+	hypothetical protein	NA	NA	NA	NA
WP_042317552.1\|4404120_4405206_+	hypothetical protein	A0A0N7ACY8	Bacillus_phage	5.2e-93	48.2
WP_015759570.1\|4405202_4405391_+	hypothetical protein	NA	NA	NA	NA
WP_015759571.1\|4405404_4405827_+	DUF2190 family protein	A0A0N7ACR5	Bacillus_phage	1.2e-16	40.3
WP_015759572.1\|4405842_4406889_+	hypothetical protein	A0A0N7ACJ3	Bacillus_phage	4.1e-63	39.9
WP_015759573.1\|4406913_4407273_+	hypothetical protein	A0A0N7ACH0	Bacillus_phage	1.1e-26	54.1
WP_015759574.1\|4407272_4407656_+	hypothetical protein	NA	NA	NA	NA
WP_015759575.1\|4407683_4408115_+	hypothetical protein	A0A0N7ACC6	Bacillus_phage	4.5e-40	51.8
WP_015759576.1\|4408118_4408961_+	hypothetical protein	A0A0N7ACG6	Bacillus_phage	1.2e-68	45.2
WP_015759577.1\|4408972_4409188_+	hypothetical protein	NA	NA	NA	NA
WP_015759578.1\|4409189_4410638_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0N7AEC6	Bacillus_phage	1.8e-101	42.9
WP_015759579.1\|4410653_4411112_+\|tail	phage tail tube protein	A0A0N7ACS0	Bacillus_phage	8.1e-32	50.4
WP_015759580.1\|4411118_4411523_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	1.1e-27	46.2
WP_015759581.1\|4411537_4411696_+	hypothetical protein	NA	NA	NA	NA
WP_015759582.1\|4411688_4416125_+\|tail	phage tail tape measure protein	A0A1B1P7S6	Bacillus_phage	5.6e-61	39.9
WP_015759583.1\|4416136_4416790_+	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	2.9e-51	52.0
WP_015759584.1\|4416786_4417785_+	hypothetical protein	A0A0N6W8H4	Bacillus_phage	5.2e-108	57.3
WP_015759585.1\|4417768_4418185_+	hypothetical protein	NA	NA	NA	NA
WP_015759586.1\|4418177_4418636_+	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	6.9e-23	38.4
WP_015759587.1\|4418635_4419766_+\|plate	baseplate J/gp47 family protein	A0A2H4J7K8	uncultured_Caudovirales_phage	4.2e-45	34.5
WP_015759588.1\|4419762_4420704_+	DUF2313 domain-containing protein	A0A0N7AED0	Bacillus_phage	1.1e-11	31.4
WP_015759589.1\|4420703_4420958_+	hypothetical protein	NA	NA	NA	NA
WP_015759590.1\|4420957_4421257_+	hypothetical protein	NA	NA	NA	NA
WP_015759591.1\|4421260_4421770_+	hypothetical protein	A0A2K9VGY9	Faecalibacterium_phage	9.4e-05	43.9
WP_015759592.1\|4421782_4422160_+	hypothetical protein	NA	NA	NA	NA
WP_015759593.1\|4422159_4423152_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	H7BVP1	unidentified_phage	5.3e-52	37.5
WP_015759594.1\|4423220_4423562_+	diversity-generating retroelement protein Avd	A0A0N7ACE0	Bacillus_phage	4.3e-30	59.6
WP_015759595.1\|4423879_4424989_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	2.4e-106	51.5
WP_015759596.1\|4424985_4425144_+	hypothetical protein	NA	NA	NA	NA
WP_174260369.1\|4425224_4426073_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_015759599.1\|4426310_4427894_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.5e-85	40.1

Anti-CRISPR protein detection

Acr_ID: NC_013216.1|WP_015759596.1|4424985_4425144_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_013216.1|WP_015759596.1|4424985_4425144_+|hypothetical-protein

4424985_4425144_+

52 aa aa

4389056-4427894

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_013216_8	TypeI-B	8.2\|3190028\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3190028-3190064	37	4393160-4393196	2
NC_013216_8	TypeI-B	8.3\|3190095\|37\|NC_013216\|PILER-CR,CRISPRCasFinder,CRT	3190095-3190131	37	4393160-4393196	2

1. spacer 8.2|3190028|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NC_013216 position: 4393160-4393196, mismatch: 2

gaaacgaaaagcggaaatgaaaaagttctcgaaaaaa	CRISPR spacer
gaaacgaaaggaggaaatgaaaaagttctcgaaaaaa	Protospacer
*********.* *************************

2. spacer 8.3|3190095|37|NC_013216|PILER-CR,CRISPRCasFinder,CRT matches to NC_013216 position: 4393160-4393196, mismatch: 2

gaaacgaaaagcggaaatgaaaaagttctcgaaaaaa	CRISPR spacer
gaaacgaaaggaggaaatgaaaaagttctcgaaaaaa	Protospacer
*********.* *************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013216

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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