CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013358	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1003, complete sequence	0 crisprs	NA	0	0	0	0
NC_013355	Zymomonas mobilis subsp. mobilis NCIMB 11163, complete sequence	3 crisprs	cas6f,cas7f,cas5f,cas8f,cas3f,cas1,DEDDh,WYL,csa3	0	25	2	0
NC_013356	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001, complete sequence	0 crisprs	csa3	0	0	0	0
NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	1 crisprs	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	0	49	0	0

1. NC_013355

CRISPR-Cas detection and classification

Crispr_ID: NC_013355_1

• CRISPR_ID: NC_013355_1
• CRISPR_location: 126368-127178
• CRISPR_type: Orphan
• Repeat_type: I-F
• Spacer_info: 13 spacers

Consensus repeat of NC_013355_1

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

spacers of NC_013355_1

>1.1|126396|32|NC_013355|CRISPRCasFinder,CRT
AGAAATTCTATCTTTTTTCACCACGGGCATAA
>1.2|126456|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
TTCGGGAATTGCACGATGAAGGAAACGAAAAA
>1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR
GATGGCAGCACATATAGCTATATCACAAGCAAT
>1.4|126577|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
GCAAAAACAACCGCCACACTTGGTCATCATCC
>1.5|126637|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
CTGATCGCGCCGCCCAGTCCGCTAACCACGAT
>1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR
CATAGCTGCAAATTGGCGCGATACGACGATTTT
>1.7|126758|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
ATTATATCGTTGCGCATCTTGCCTCACTTCGA
>1.8|126818|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
CATCGGAATGACTGGCTGAACGGGAAATATAA
>1.9|126878|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
ACTTTTCCAGTAAAGCCCTGCCGATTGATCTT
>1.10|126938|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR
TTAACGATCGTCATTTCTTGGCGGCCGCCAAGT
>1.11|126999|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
GTGTCAAAAGAGACATACCCAAAGTTTCTTAC
>1.12|127059|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
ATTGCTGCATAGCTGTGGCGCAACAATCTTGT
>1.13|127119|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR
TCGCTAGCGCCTTATCGACGCGCTCTTGAATG

CRISPR arrays and Neighbor proteins around NC_013355_1

CRISPR arrays

The CRISPR arrays of NC_013355_1

>merge|NC_013355|1|126368-127178|CRISPRCasFinder,CRT,PILER-CR
CTAAGCAACTGCCTGCGCGGCAGTGAACAGAAATTCTATCTTTTTTCACCACGGGCATAATTTCTAAGCTGCCTGTGCGGCAGTGAACTTCGGGAATTGCACGATGAAGGAAACGAAAAATTTCTAAGCTGCCTGTGCGGCAGTGAACGATGGCAGCACATATAGCTATATCACAAGCAATTTTCTAAGCTGCCTGTGCGGCAGTGAACGCAAAAACAACCGCCACACTTGGTCATCATCCTTTCTAAGCTGCCTGTGCGGCAGTGAACCTGATCGCGCCGCCCAGTCCGCTAACCACGATTTTCTAAGCTGCCTGTGCGGCAGTGAACCATAGCTGCAAATTGGCGCGATACGACGATTTTTTTCTAAGCTGCCTGTGCGGCAGTGAACATTATATCGTTGCGCATCTTGCCTCACTTCGATTTCTAAGCTGCCTGTGCGGCAGTGAACCATCGGAATGACTGGCTGAACGGGAAATATAATTTCTAAGCTGCCTGTGCGGCAGTGAACACTTTTCCAGTAAAGCCCTGCCGATTGATCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTAACGATCGTCATTTCTTGGCGGCCGCCAAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACGTGTCAAAAGAGACATACCCAAAGTTTCTTACTTTCTAAGCTGCCTGTGCGGCAGTGAACATTGCTGCATAGCTGTGGCGCAACAATCTTGTTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCTAGCGCCTTATCGACGCGCTCTTGAATGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_013355|1|1|126368-127178|CRISPRCasFinder
CTAAGCAACTGCCTGCGCGGCAGTGAAC	AGAAATTCTATCTTTTTTCACCACGGGCATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCGGGAATTGCACGATGAAGGAAACGAAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGGCAGCACATATAGCTATATCACAAGCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAAAAACAACCGCCACACTTGGTCATCATCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGATCGCGCCGCCCAGTCCGCTAACCACGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATAGCTGCAAATTGGCGCGATACGACGATTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTATATCGTTGCGCATCTTGCCTCACTTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATCGGAATGACTGGCTGAACGGGAAATATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTTTTCCAGTAAAGCCCTGCCGATTGATCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAACGATCGTCATTTCTTGGCGGCCGCCAAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTGTCAAAAGAGACATACCCAAAGTTTCTTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGCTGCATAGCTGTGGCGCAACAATCTTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCTAGCGCCTTATCGACGCGCTCTTGAATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_013355|1|1|126368-127178|CRT
CTAAGCAACTGCCTGCGCGGCAGTGAAC	AGAAATTCTATCTTTTTTCACCACGGGCATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCGGGAATTGCACGATGAAGGAAACGAAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGGCAGCACATATAGCTATATCACAAGCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAAAAACAACCGCCACACTTGGTCATCATCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGATCGCGCCGCCCAGTCCGCTAACCACGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATAGCTGCAAATTGGCGCGATACGACGATTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTATATCGTTGCGCATCTTGCCTCACTTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATCGGAATGACTGGCTGAACGGGAAATATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTTTTCCAGTAAAGCCCTGCCGATTGATCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAACGATCGTCATTTCTTGGCGGCCGCCAAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTGTCAAAAGAGACATACCCAAAGTTTCTTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGCTGCATAGCTGTGGCGCAACAATCTTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCTAGCGCCTTATCGACGCGCTCTTGAATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_013355|1|1|126428-127178|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCGGGAATTGCACGATGAAGGAAACGAAAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGGCAGCACATATAGCTATATCACAAGCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAAAAACAACCGCCACACTTGGTCATCATCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTGATCGCGCCGCCCAGTCCGCTAACCACGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATAGCTGCAAATTGGCGCGATACGACGATTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTATATCGTTGCGCATCTTGCCTCACTTCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATCGGAATGACTGGCTGAACGGGAAATATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTTTTCCAGTAAAGCCCTGCCGATTGATCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTAACGATCGTCATTTCTTGGCGGCCGCCAAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTGTCAAAAGAGACATACCCAAAGTTTCTTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGCTGCATAGCTGTGGCGCAACAATCTTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCTAGCGCCTTATCGACGCGCTCTTGAATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_013355.1|WP_011241045.1|119118_120114_+|dipeptide-epimerase	unknown	unknown	gnl|CDD|239435
NC_013355.1|WP_012816906.1|128236_129889_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|226434
NC_013355.1|WP_012816909.1|134563_135910_+|glutathione-disulfide-reductase	unknown	unknown	gnl|CDD|235701
NC_013355.1|WP_011241036.1|125488_126277_+|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl|CDD|376413
NC_013355.1|WP_011241044.1|120192_120822_-|50S-ribosomal-protein-L9	unknown	unknown	gnl|CDD|234659
NC_013355.1|WP_012816912.1|141124_142075_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176153
NC_013355.1|WP_012816903.1|123870_124533_+|hypothetical-protein	unknown	unknown	unknown
NC_013355.1|WP_011241032.1|132120_132546_-|hypothetical-protein	unknown	unknown	gnl|CDD|227505
NC_013355.1|WP_012816907.1|129915_130128_-|hypothetical-protein	unknown	unknown	gnl|CDD|375983
NC_013355.1|WP_011241031.1|132877_134401_+|glucose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|366041
NC_013355.1|WP_044098944.1|130472_131951_-|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223587
NC_013355.1|WP_011241038.1|124685_124949_+|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl|CDD|234822
NC_013355.1|WP_011241042.1|121081_121456_-|30S-ribosomal-protein-S6	unknown	unknown	gnl|CDD|179034
NC_013355.1|WP_012816902.1|121977_122913_+|ACP-S-malonyltransferase	unknown	unknown	gnl|CDD|223408
NC_013355.1|WP_011241043.1|120836_121061_-|30S-ribosomal-protein-S18	unknown	unknown	gnl|CDD|178997
NC_013355.1|WP_012816904.1|125033_125492_+|twin-arginine-translocase-subunit-TatB	unknown	unknown	gnl|CDD|130477
NC_013355.1|WP_011241040.1|122982_123720_+|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl|CDD|187594
NC_013355.1|WP_012816910.1|136376_138335_+|potassium-transporter-Kup	unknown	unknown	gnl|CDD|225700
NC_013355.1|WP_012816911.1|140065_141055_-|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl|CDD|143588
NC_013355.1|WP_012816905.1|127734_127869_-|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl|CDD|227797

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_013355.1|WP_011241045.1|119118_120114_+|dipeptide-epimerase	gnl|CDD|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	1.39911e-117
NC_013355.1|WP_012816906.1|128236_129889_-|sensor-histidine-kinase	gnl|CDD|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	3.27983e-20
NC_013355.1|WP_012816909.1|134563_135910_+|glutathione-disulfide-reductase	gnl|CDD|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NC_013355.1|WP_011241036.1|125488_126277_+|twin-arginine-translocase-subunit-TatC	gnl|CDD|376413	pfam00902, TatC, Sec-independent protein translocase protein (TatC). The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.	3.94496e-76
NC_013355.1|WP_011241044.1|120192_120822_-|50S-ribosomal-protein-L9	gnl|CDD|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	4.06061e-62
NC_013355.1|WP_012816912.1|141124_142075_+|LysR-family-transcriptional-regulator	gnl|CDD|176153	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.1521e-78
NC_013355.1|WP_011241032.1|132120_132546_-|hypothetical-protein	gnl|CDD|227505	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification].	0.000693568
NC_013355.1|WP_012816907.1|129915_130128_-|hypothetical-protein	gnl|CDD|375983	pfam18557, NepR, Anti-sigma factor NepR. The general stress response sigma factor in alphaproteobacteria, sigma EcfG is inactivated by the anti-sigma factor NepR, which is itself regulated by the response regulator PhyR. NepR forms two helices that extend over the surface of the PhyR subdomains. Homology modeling and comparative analysis of NepR, PhyR and sigmaEcfG mutants indicate that NepR contacts both proteins with the same determinants, showing sigma factor mimicry at the atomic level. This entry represents NepR domains found in alphaproteobacteria.	1.3645e-06
NC_013355.1|WP_011241031.1|132877_134401_+|glucose-6-phosphate-isomerase	gnl|CDD|366041	pfam00342, PGI, Phosphoglucose isomerase. Phosphoglucose isomerase catalyzes the interconversion of glucose-6-phosphate and fructose-6-phosphate.	0
NC_013355.1|WP_044098944.1|130472_131951_-|DEAD/DEAH-box-helicase	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.24197e-158
NC_013355.1|WP_011241038.1|124685_124949_+|twin-arginine-translocase-TatA/TatE-family-subunit	gnl|CDD|234822	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit.	9.82533e-37
NC_013355.1|WP_011241042.1|121081_121456_-|30S-ribosomal-protein-S6	gnl|CDD|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	6.50436e-48
NC_013355.1|WP_012816902.1|121977_122913_+|ACP-S-malonyltransferase	gnl|CDD|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.76421e-122
NC_013355.1|WP_011241043.1|120836_121061_-|30S-ribosomal-protein-S18	gnl|CDD|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.27745e-35
NC_013355.1|WP_012816904.1|125033_125492_+|twin-arginine-translocase-subunit-TatB	gnl|CDD|130477	TIGR01410, Sec-independent_protein_translocase_protein_tatB., twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.72285e-18
NC_013355.1|WP_011241040.1|122982_123720_+|3-oxoacyl-ACP-reductase-FabG	gnl|CDD|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.93138e-124
NC_013355.1|WP_012816910.1|136376_138335_+|potassium-transporter-Kup	gnl|CDD|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NC_013355.1|WP_012816911.1|140065_141055_-|carbon-nitrogen-hydrolase-family-protein	gnl|CDD|143588	cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1.	1.44968e-150
NC_013355.1|WP_012816905.1|127734_127869_-|entericidin-A/B-family-lipoprotein	gnl|CDD|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	3.83263e-06

Protein sequences

>NC_013355.1|WP_011241036.1|125488_126277_+|twin-arginine-translocase-subunit-TatC
MSETDDIHDEVDESAAPLLDHLLELRKRLLISLVALGIAFLLCLHFSRSIFAFLVQPLLRAGQGRLIYTDIFEAFFVDIKVAFFAAIMLAFPIVAMQIWRFIAPGLYSNEKRAFLPFLVMTPLLFLVGASMAYYVAMPIALHFLLGYQGNIGGVQQTALPAVGNYLNFVTKFIFGFGVAFLLPLVLLLLERAGFVTRQQLVAGRRYAIVASVAIAAVLTPPDIVSQLLLGVPLILLYEMALLAMLFGEKRRKKETDLVVAED
>NC_013355.1|WP_012816904.1|125033_125492_+|twin-arginine-translocase-subunit-TatB
MFDVAPSELLLVAVVALVVIGPKDLPRAMRVVGRWLGKARKLSRHFRSGIDEMIRQSEMEDMEKRWAEENAKLLAENQGQGNQTASTSSPATPSPVSDDPAEQNIVFASPADLEVNTADTSHLAANHTETAATTAASTPAKPKEADQQEKQS
>NC_013355.1|WP_011241038.1|124685_124949_+|twin-arginine-translocase-TatA/TatE-family-subunit
MGGMSITHWIVVAVVVMIFFGKGRFSDMMGDVAKGIKSFKKGMSEDDTTPPAAPPAPAPRLENQPLPPENTTQNVAQNVPNDIKNNQ
>NC_013355.1|WP_012816903.1|123870_124533_+|hypothetical-protein
MSIFKSGFAPVITLSLASLLLGGCVVHHGQFDEMGSMTVRRSSCPAVAVPDYTGDVTLFNPSDQRTASAIDIEAVITKLRPKCDDTASGPVVTHLTFTVQARRRHVGGARDITLPYFVAVMRAGTRLLSKEMGTVRIHFEPGQMATDTEVTTSSAIDHDSATLPRDIIRQLNKVRQVTDVDASVDPTNDPKVRAAMKEASFEMLVGFQLTEPQLAYNATR
>NC_013355.1|WP_011241040.1|122982_123720_+|3-oxoacyl-ACP-reductase-FabG
MFDLNGLTAVVTGASGGIGSAIAKALADQGAQVALSGTRESALKEVAAILPNDPIILPANLGQKEDVEQLVPRALEKLGKIDILVNNAGITRDGLMMRMKDEDWADVIALNLESVFRLSRAVIRPMMKTRFGRIINISSVVGQTGNAGQANYAAAKAGMIGMSKSLAREVASRGITVNCIAPGFIETKMTEILSEQQKEAAKSQIPAGRFGDIQDIAAAAVYLASKEAGYMTGQTLSVNGGMSML
>NC_013355.1|WP_012816902.1|121977_122913_+|ACP-S-malonyltransferase
MRAFIFPGQGSQSVGMGQALADASLAARHVFEEVDEALKQNLFRLMSQGPEEELRLTENAQPAIMAHSMAVLAMLEKEGNIRLTDAASFVAGHSLGEYSALAAADAFDLPTTARLLKKRGQAMQAAVPVGEGGMAAILGLDFETVESIAQEAAENDICQAANDNAPGQVVISGSLAAIERAVALAKEKGARRAVMLDVSAPFHCSLMQPAADVMAKALQENRPRQPIVPVFANVSATAETDPTKIMNLLVEQVTGRVRWRESIAAMAAAGVEEFVEFGGKVLAPMIKRIAPHCKATSLIAPADIENFAASL
>NC_013355.1|WP_011241042.1|121081_121456_-|30S-ribosomal-protein-S6
MPLYEHVFLARQDLAQTQVDGLAATATSIIEEKSGKVVKTEIWGLRNLAYRIQKNRKAYYIMLEIDAPADAIQELERQMALNEDVIRYMTVRVDAHEQGPSAMMRRGDRDRSNRSDRRRDRDAA
>NC_013355.1|WP_011241043.1|120836_121061_-|30S-ribosomal-protein-S18
MARPFFRRRKSCPFAAKDAPKIDYKDVRLLQGFVSERGKIVPSRITAVSAKKQRELARAIKRARHIGLLPFIVK
>NC_013355.1|WP_011241044.1|120192_120822_-|50S-ribosomal-protein-L9
MDVILLERIEKLGHIGDVVAVKNGYARNFLLPRKKALRANEANRKIFEANRAQIEADNAARRTDAEKESEVVNGLTVTLIRQASNTGHLYGSVSARDLADAIVEAKPEAKVAKNQIVLDRPIKSIGISEVRVVLHPEVAVKIKVNVARSPEEAELQAEGVDVMNQMFERDGASFTEDYDPNAEPGLATEAEEAVADADDNAETNSEESL
>NC_013355.1|WP_011241045.1|119118_120114_+|dipeptide-epimerase
MTATRSLSIMGESLPLKTPFRISRGVKNTIDTIVANISESGVTGRGEGIPYPRYGQTVESALIEANSVSHKITEHYGREALLTLLPPGPARNALDCALWDIEARISGQSVASMMGIAKLEPLATAVTISLDEPEVMAKAAAKLAYCPVIKVKVDEHNPEDCIKAVRDQAPKARLIVDPNESWSFDLLDKMQNFLADARVALLEQPLAAGADEALKGFSPAVPICADEVFHSADDLDHIADRYQVINIKLDKTGGLTAAIDIMKQARSLNLSIMVGCMVCSSLSLAPAFHLAAQADFVDLDGADWLVHDRNDGMLLDNGILHPPSATFWGGP
>NC_013355.1|WP_012816905.1|127734_127869_-|entericidin-A/B-family-lipoprotein
MRILIHCLMASAVLALAACNTVQGFGQDLSSAGQSMSNSAERNK
>NC_013355.1|WP_012816906.1|128236_129889_-|sensor-histidine-kinase
MKAFFKNSPSKTFHKKQLLTRRLFLLFVSMPTWFRMLVVLSLAQLPPSFVALGAFIASSHQYRLNHQKEAQLIATESARTIDDSVDILAYDVRNIFDEEGSYDFADMGECSLLIQHMQSLGFVPVDYALMDTSGRLLCKSDNFKVNTAVLLPFKPLGANNFYNVDILENEGQLQFSFLGGHYPLSKYLVVGQIGRDSLLKIIERKVVPDGSALFLAQKSHLLPLISPKKPLLKQSHPVVIPTFDNSINLIYDNNLPPFRKVDLLFVLLPVLIWFMTASIGWVVVHYMLLRPLRRTQRAIVDYGKTGEIQKIKPASIGAAREIRQVSKAFYHVAVRLAAHERALRNALQHQKMLTREVHHRVKNNLQVVSSLLSIHSRRAETAKEKSAYATIQRRVNALAIVQRQYYNELDKGQGLDLSLLIKELVNGLQTSLQTFEKNFQIETEIDQVFVPLEKAMPIAFILVEIVDFSLAVDPLLPITIILHRHSAEFENTPDHAGLEIRAEALKQLSSRKGNEVIRRIISAFGRQLGGKSVEKEEDGYYYYDIDILPD
>NC_013355.1|WP_012816907.1|129915_130128_-|hypothetical-protein
MNGSMTAHNHKRPVSQELPTSSGNAAHADESAKQEEDRKNAIGFALRNVYQQTVEEAVPDDLLALLAKLN
>NC_013355.1|WP_044098944.1|130472_131951_-|DEAD/DEAH-box-helicase
MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEKLMGVEIPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTETPKKLPEDRLDSVESDFPKNQAPRNTASRPVSKARTQERALRPENLRRVKPVALETAIDWNGPIPPFLNYSVPKTTARNAKKD
>NC_013355.1|WP_011241032.1|132120_132546_-|hypothetical-protein
MPPRHFPHSGVMEIHLNVRNANGRNQRPLPPPPPPPDSPYNAPPPPPEAVWHEKKGPKCVSPEDIGAAAVSEKDSVDLMLKGGSRIRAHLEHCPALDFYSGFYVHAGRDGQICAKRDPVYARWGGECLINRFRVVEGVFKH
>NC_013355.1|WP_011241031.1|132877_134401_+|glucose-6-phosphate-isomerase
MARIANKAAIDAAWKQVSACSEKTLKQLFEEDSNRLSGLVVETAKLRFDFSKNHLDSQKLTAFKKLLEACDFDARRKALFAGEKINITEDRAVEHMAERGQGAPASVARAKEYHARMRTLIEAIDAGAFGEVKHLLHIGIGGSALGPKLLIDALTRESGRYDVAVVSNVDGQALEEVFKKFNPHKTLIAVASKTFTTAETMLNAESAMEWMKKHGVEDPQGRMIALTANPAKASEMGIDDTRILPFAESIGGRYSLWSSIGFPAALALGWEGFQQLLEGGAAMDRHFLEAAPEKNAPILAAFADQYYSAVRGAQTHGIFAYDERLQLLPFYLQQLEMESNGKRVDLDGNLIDHPSAFITWGGVGTDAQHAVFQLLHQGTRLVPIEFIAAIKADDTLNPVHHKTLLTNAFAQGAALMSGRDNKDPARSYPGDRPSTTILMEELRPAQLGALIAFYEHRTFTNGVLLGINSFDQFGVELGKEMAHAIADHPENSDFDPSTKALIAAALK
>NC_013355.1|WP_012816909.1|134563_135910_+|glutathione-disulfide-reductase
MTDYDFDLFVIGAGSGGVRASRIAASHGASVAIAEEYRIGGTCVIRGCVPKKMLYYAADFAADLKKAQRFGWTLPEKKFDWSTLRDVVLSDVTRLEGLYTQTLDNNHITHYKEHAVIEGANQIRLASGKKITARYILVAVGAEPAKLDIPGAEYAVTSNEMFLLPSLPKRALVVGGGYIANEFAGILNSFGVETTIATHGDRILRGYDEEIAARLVEIGQGHGIDYRFNADIARIDKDSSGHLTTHFKDGSQIESDLVLFAIGRVAKSRDLGLDKADVKTNDRGAILVDEENRTSCPSIYAVGDVTDRVQLTPVAIREGQAFADRVFGHKAASVDYDTIPTAVFSHPPLASAGLTEEEAKKRYKNIKIYKSNFRPMRNALIDSPDRALYKMVVEGDSDKVLGLHLIGQDSPEIIQLAAVAIKAGLTKQAFNDTVALHPSSAEELVLMR
>NC_013355.1|WP_012816910.1|136376_138335_+|potassium-transporter-Kup
MSNDTSPGISSVDSKSSDPSYGVPGHSHSDKDLLKLSLGAIGIVFGDIGTSPLYALKECFKGHHQLPVDDFHIYGLVSLIFWTMGLVVTVKYVMFIMKADNKGEGGSMSLLSLIIRGANPKLSRWLIVLGVFATALFYGDSMITPAISVLSAVEGLTVIEPSFDSWVPPVSVVILIGLFCIQARGTESVGRLFGPIMLVYFATLAILGAFNIITRSPAILLALNPYYAIHFFVSDPLQGFWALGSVVLSVTGAEALYADMGHFGRQPISLGWYWVVFPALTLNYLGQCALLSADHEAIANPFYFLAPDFLRIPLIILATFASIIASQAVITGAFSVTQQAIQLGYIPRLRVNHTSASTVGQIYIPSVNWVLMFMVMVLIAMFKTSTNLANAYGIAVTGTMFITSCMMGVLVHRVWHWKAWQSIPLVSSFLLIDGAFFLSNVTKIPEGGWFPLLIGFVVFTMLMTWSRGRHLMAERMRQVAMPIQLFIRSAAASAVRIPGTAIFLTPEDDGVPHALLHNLKHNKILHERVILLTVKIEDVPYVDPHYRASMSSLEDGFYRLIVRYGFMEEPDVPLALNKIEQSGPMLRMDDTSFFISRQTLIPSTHTGMAIWREKLFASMLRNSESATEFFKLPSNRVVELGSQIELVGSNGK
>NC_013355.1|WP_012816911.1|140065_141055_-|carbon-nitrogen-hydrolase-family-protein
MSCHRVAVIQAGTSLFDTEKTLDRMEALCCQAAEQNVELAVFPEAYIGGYPKGLDFGARMGTRTEAGREDFLRYWKAAIDVPGKETARIGSFAAKMKAYLVVGVIERSEATLYCTALFFAPDGTLIGKHRKLMPTATERLVWGQGDGSTIEILDTAVGKLGAAICWENYMPALRQVMYAGGVNIWCAPTVDQREIWQVSMRHIAYEGRLFVLSACQYMTRADAPVDYDCIQGNDPETELIAGGSVIIDPMGNILAGPLYGQEGVLVADIDLSDTIKARYDLDVSGHYGRPDIFEIKVDRQSHQVITDQFSRDPATEKKPVSDSEISQLD
>NC_013355.1|WP_012816912.1|141124_142075_+|LysR-family-transcriptional-regulator
MIRKINISDITRFDFNLVITFLALWHERSVTKAAARLSLSQSAVSASLSRLRQAAGDLLFIRTRQGMEPTQRAIDMVESLSEGATLIYNAFISENEFDPARCNRHFSIGMSDDFQLALGSEISKQIQAIAPEASVVYRQTNRYTAQQMLENNDIDLAIVTASLPRRGLWQQVIGEGGYACLCDAQSCGFSENPTLEAYLSLPHILVSYSGREGLVDEILSIMGRSRKIQTALTHFAALPPFLLGSKSIATIPSHAAISLAGYTGLTIFEAPLELTAYPIIATMRLSSQKDTALLWLFQIIKQAIRVQQNILPPPQS

Crispr_ID: NC_013355_2

• CRISPR_ID: NC_013355_2
• CRISPR_location: 1255057-1256050
• CRISPR_type: Orphan
• Repeat_type: I-F
• Spacer_info: 16 spacers

Consensus repeat of NC_013355_2

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

spacers of NC_013355_2

>2.1|1255085|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AAGAATATGTTCGTGACCGTGATAATCCAACAA
>2.2|1255146|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATCCGCGCCGCATTTTTTGTCAGCCGCAATCA
>2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AGCGAATAGCTGAAAATTTATATTTCAATTCGT
>2.4|1255267|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TGAAATGTTGGGCGTTAACAAACCCTCGTGGT
>2.5|1255327|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AAAGAAAGCGGCGAGGCTTTGCAAATTCGCCTA
>2.6|1255388|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TATGGGTTTATGATACTTATTGCCTGTTTTAT
>2.7|1255448|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
CGCTGCACCCCGTCCCAGTGCAAGCCCGACAG
>2.8|1255508|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AGTTATATCAATAAATGAACCATCCTTTTCAT
>2.9|1255568|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AAGAAGATCATAAAGACGACGAAGATGATAGC
>2.10|1255628|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ACACCTCCAAGTGTCGCTAATAGCCTTTGTCC
>2.11|1255688|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TGCCTCCTCTCTAGCGCGATCTGGCGCTAGAG
>2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TATCTATTGCCGATTCGTTACCAATTAAAAAAC
>2.13|1255809|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ACATGGATTTTTCAGCAGCCAATAGCATGTCC
>2.14|1255869|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
GTTTGGCACCGCGATAACATCAACGTTCCTACT
>2.15|1255930|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATTCGTCAAGTAGCGTGATGCTATCATAGACG
>2.16|1255990|33|NC_013355|CRISPRCasFinder,CRT
GTAAGCGGTGCAATAGTTAAATATCACTGACCA

CRISPR arrays and Neighbor proteins around NC_013355_2

CRISPR arrays

The CRISPR arrays of NC_013355_2

>merge|NC_013355|2|1255057-1256050|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAAAGAATATGTTCGTGACCGTGATAATCCAACAAGTTCACTGCCGCACAGGCAGCTTAGAAAATCCGCGCCGCATTTTTTGTCAGCCGCAATCAGTTCACTGCCGCACAGGCAGCTTAGAAAAGCGAATAGCTGAAAATTTATATTTCAATTCGTGTTCACTGCCGCACAGGCAGCTTAGAAATGAAATGTTGGGCGTTAACAAACCCTCGTGGTGTTCACTGCCGCACAGGCAGCTTAGAAAAAAGAAAGCGGCGAGGCTTTGCAAATTCGCCTAGTTCACTGCCGCACAGGCAGCTTAGAAATATGGGTTTATGATACTTATTGCCTGTTTTATGTTCACTGCCGCACAGGCAGCTTAGAAACGCTGCACCCCGTCCCAGTGCAAGCCCGACAGGTTCACTGCCGCACAGGCAGCTTAGAAAAGTTATATCAATAAATGAACCATCCTTTTCATGTTCACTGCCGCACAGGCAGCTTAGAAAAAGAAGATCATAAAGACGACGAAGATGATAGCGTTCACTGCCGCACAGGCAGCTTAGAAAACACCTCCAAGTGTCGCTAATAGCCTTTGTCCGTTCACTGCCGCACAGGCAGCTTAGAAATGCCTCCTCTCTAGCGCGATCTGGCGCTAGAGGTTCACTGCCGCACAGGCAGCTTAGAAATATCTATTGCCGATTCGTTACCAATTAAAAAACGTTCACTGCCGCACAGGCGGCTTAGAAAACATGGATTTTTCAGCAGCCAATAGCATGTCCGTTCACTGCCGCACAGGCAGCTTAGAAAGTTTGGCACCGCGATAACATCAACGTTCCTACTGTTCACTGCCGCACAGGCAGCTTAGAAAATTCGTCAAGTAGCGTGATGCTATCATAGACGGTTCACTGCCGCACAGGCAGCTTAGAAAGTAAGCGGTGCAATAGTTAAATATCACTGACCAGTTCACTGCCGCACAGGCAGCATCAAAT

>NC_013355|2|2|1255057-1255989|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAATATGTTCGTGACCGTGATAATCCAACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCGCCGCATTTTTTGTCAGCCGCAATCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGCGAATAGCTGAAAATTTATATTTCAATTCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGAAATGTTGGGCGTTAACAAACCCTCGTGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAGAAAGCGGCGAGGCTTTGCAAATTCGCCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATGGGTTTATGATACTTATTGCCTGTTTTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCTGCACCCCGTCCCAGTGCAAGCCCGACAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTTATATCAATAAATGAACCATCCTTTTCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAAGATCATAAAGACGACGAAGATGATAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACACCTCCAAGTGTCGCTAATAGCCTTTGTCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCCTCCTCTCTAGCGCGATCTGGCGCTAGAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCTATTGCCGATTCGTTACCAATTAAAAAAC
GTTCACTGCCGCACAGGCGGCTTAGAAA	ACATGGATTTTTCAGCAGCCAATAGCATGTCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTGGCACCGCGATAACATCAACGTTCCTACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTCGTCAAGTAGCGTGATGCTATCATAGACG
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NC_013355|2|2|1255057-1256050|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAATATGTTCGTGACCGTGATAATCCAACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCGCCGCATTTTTTGTCAGCCGCAATCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGCGAATAGCTGAAAATTTATATTTCAATTCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGAAATGTTGGGCGTTAACAAACCCTCGTGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAGAAAGCGGCGAGGCTTTGCAAATTCGCCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATGGGTTTATGATACTTATTGCCTGTTTTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCTGCACCCCGTCCCAGTGCAAGCCCGACAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTTATATCAATAAATGAACCATCCTTTTCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAAGATCATAAAGACGACGAAGATGATAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACACCTCCAAGTGTCGCTAATAGCCTTTGTCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCCTCCTCTCTAGCGCGATCTGGCGCTAGAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCTATTGCCGATTCGTTACCAATTAAAAAAC
GTTCACTGCCGCACAGGCGGCTTAGAAA	ACATGGATTTTTCAGCAGCCAATAGCATGTCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTGGCACCGCGATAACATCAACGTTCCTACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTCGTCAAGTAGCGTGATGCTATCATAGACG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTAAGCGGTGCAATAGTTAAATATCACTGACCA
GTTCACTGCCGCACAGGCAGCATCAAAT

>NC_013355|2|2|1255057-1256050|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAATATGTTCGTGACCGTGATAATCCAACAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCGCCGCATTTTTTGTCAGCCGCAATCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGCGAATAGCTGAAAATTTATATTTCAATTCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGAAATGTTGGGCGTTAACAAACCCTCGTGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAAGAAAGCGGCGAGGCTTTGCAAATTCGCCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATGGGTTTATGATACTTATTGCCTGTTTTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCTGCACCCCGTCCCAGTGCAAGCCCGACAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTTATATCAATAAATGAACCATCCTTTTCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAAGATCATAAAGACGACGAAGATGATAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACACCTCCAAGTGTCGCTAATAGCCTTTGTCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCCTCCTCTCTAGCGCGATCTGGCGCTAGAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCTATTGCCGATTCGTTACCAATTAAAAAAC
GTTCACTGCCGCACAGGCGGCTTAGAAA	ACATGGATTTTTCAGCAGCCAATAGCATGTCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTGGCACCGCGATAACATCAACGTTCCTACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTCGTCAAGTAGCGTGATGCTATCATAGACG
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTAAGCGGTGCAATAGTTAAATATCACTGACCA
GTTCACTGCCGCACAGGCAGCATCAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_013355.1|WP_012817489.1|1262349_1263516_-|Na+/H+-antiporter-NhaA	unknown	unknown	gnl|CDD|377746
NC_013355.1|WP_012817484.1|1253674_1254634_+|S1/P1-nuclease	unknown	unknown	gnl|CDD|367008
NC_013355.1|WP_011240086.1|1263674_1265312_-|hydroxylamine-reductase	unknown	unknown	gnl|CDD|235391
NC_013355.1|WP_012817491.1|1266015_1266852_-|aminotransferase-class-IV	unknown	unknown	gnl|CDD|238800
NC_013355.1|WP_012817481.1|1247620_1248439_-|sel1-repeat-family-protein	unknown	unknown	gnl|CDD|276807
NC_013355.1|WP_012817482.1|1250047_1250842_+|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239491
NC_013355.1|WP_012817479.1|1245121_1246489_-|sel1-repeat-family-protein	unknown	unknown	gnl|CDD|276807
NC_013355.1|WP_012817477.1|1243368_1243977_-|sel1-repeat-family-protein	unknown	unknown	gnl|CDD|276807
NC_013355.1|WP_012817488.1|1261121_1262189_-|tRNA-dihydrouridine-synthase	unknown	unknown	gnl|CDD|239204
NC_013355.1|WP_044098896.1|1246667_1247390_-|sel1-repeat-family-protein	unknown	unknown	gnl|CDD|276807
NC_013355.1|WP_014848986.1|1258982_1259315_-|hypothetical-protein	unknown	unknown	unknown
NC_013355.1|WP_012817486.1|1259504_1260854_-|replication-associated-recombination-protein-A	unknown	unknown	gnl|CDD|237355
NC_013355.1|WP_012817485.1|1257132_1258716_+|ATP-binding-protein	unknown	unknown	gnl|CDD|223510
NC_013355.1|WP_012817490.1|1265378_1265816_-|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224870
NC_013355.1|WP_012817478.1|1244159_1244984_-|sel1-repeat-family-protein	unknown	unknown	gnl|CDD|276807
NC_013355.1|WP_012817476.1|1242559_1243261_-|sel1-repeat-family-protein	unknown	unknown	gnl|CDD|276807
NC_013355.1|WP_011240083.1|1266817_1267429_-|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl|CDD|235552
NC_013355.1|WP_011240096.1|1248946_1249891_+|metallophosphoesterase	unknown	unknown	gnl|CDD|277347
NC_013355.1|WP_011240092.1|1256646_1257120_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NC_013355.1|WP_012817483.1|1251164_1253657_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|238657

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_013355.1|WP_012817489.1|1262349_1263516_-|Na+/H+-antiporter-NhaA	gnl|CDD|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	5.83169e-137
NC_013355.1|WP_012817484.1|1253674_1254634_+|S1/P1-nuclease	gnl|CDD|367008	pfam02265, S1-P1_nuclease, S1/P1 Nuclease. This family contains both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity.	2.52473e-92
NC_013355.1|WP_011240086.1|1263674_1265312_-|hydroxylamine-reductase	gnl|CDD|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NC_013355.1|WP_012817491.1|1266015_1266852_-|aminotransferase-class-IV	gnl|CDD|238800	cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.	3.35387e-67
NC_013355.1|WP_012817481.1|1247620_1248439_-|sel1-repeat-family-protein	gnl|CDD|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.43204e-39
NC_013355.1|WP_012817482.1|1250047_1250842_+|phosphatase-PAP2-family-protein	gnl|CDD|239491	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.	1.57004e-94
NC_013355.1|WP_012817479.1|1245121_1246489_-|sel1-repeat-family-protein	gnl|CDD|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	7.14336e-41
NC_013355.1|WP_012817477.1|1243368_1243977_-|sel1-repeat-family-protein	gnl|CDD|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	4.01224e-41
NC_013355.1|WP_012817488.1|1261121_1262189_-|tRNA-dihydrouridine-synthase	gnl|CDD|239204	cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.	7.35385e-101
NC_013355.1|WP_044098896.1|1246667_1247390_-|sel1-repeat-family-protein	gnl|CDD|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	5.89767e-43
NC_013355.1|WP_012817486.1|1259504_1260854_-|replication-associated-recombination-protein-A	gnl|CDD|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_013355.1|WP_012817485.1|1257132_1258716_+|ATP-binding-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	1.16328e-14
NC_013355.1|WP_012817490.1|1265378_1265816_-|Rrf2-family-transcriptional-regulator	gnl|CDD|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	7.66332e-32
NC_013355.1|WP_012817478.1|1244159_1244984_-|sel1-repeat-family-protein	gnl|CDD|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.22458e-44
NC_013355.1|WP_012817476.1|1242559_1243261_-|sel1-repeat-family-protein	gnl|CDD|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.07186e-43
NC_013355.1|WP_011240083.1|1266817_1267429_-|aminodeoxychorismate/anthranilate-synthase-component-II	gnl|CDD|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	1.6661e-98
NC_013355.1|WP_011240096.1|1248946_1249891_+|metallophosphoesterase	gnl|CDD|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.68496e-18
NC_013355.1|WP_011240092.1|1256646_1257120_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	4.97033e-68
NC_013355.1|WP_012817483.1|1251164_1253657_+|TonB-dependent-receptor	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.50574e-38

Protein sequences

>NC_013355.1|WP_012817484.1|1253674_1254634_+|S1/P1-nuclease
MTDNRVSKLFKKRLTKLAIVAAMLTLPQPLYAWGMEGHEAIAALAWKYMTPTTRKKVNAILAMDHDRLTEPDFMSRATWADKWRSAGHGETEPWHFVDIEIDNPNLVTACAAASNRSNPMKNGGAQPCVVSQLDRFERELSSKQTSDQDRVLALKYVLHFVGDLHQPLHAADHDDRGGNCVKVSINNARSLNLHSYWDTYVVKEIDPDPQHLADSLKKEISPEDKKSWVLGDSKQWAMESFQLGKRYAYSFNPPAGCDATRPPIPLPAGYDSAARKVAASQLKKAGVRLAYILNHRLRSIPLSYFLQAQKQDAAANNNG
>NC_013355.1|WP_012817483.1|1251164_1253657_+|TonB-dependent-receptor
MKNLLSAKTKSFLSFKQSRLNWVILYSSLWVSGAMAQNTVPPQPATDDTSSQQHAVTDNSANHPAKNDGAIVVTGRSYADGVTRRAFGGGLMIKEDSPKSKSTLTRDYIEKQTPGLNPMQLITLLPGVNSSDSDPMGLTGGHTSVRGMNESSMGYILEGFPLNDVGSHAVYPQEIVDSENLSTIQVAQGSADLDSPTVSAAGGVVNMHMIDPAKKMGGRANFTYGSYNTFRGFARFDTGEIGNSGTRAYFSFSDTHEDLWRGPGTEKKLHGEMKVVKEWGKDNKASLLVIGNNLDNINMPSVNMASWQKYGKGIMGGPVSGIANTVYSSVYTGNTKANTTYYKLHPNPFTNIYVSAPVHLNLGHKMTLTETPYFLYSNGNGGGAYWQDMNKMSYGSQTMSGTVDGQNYGQTLLYEPSITKTYRSGSTTKWTWTSGINRLMIGYWFEYSSQRQTAPYSLLNDDGSPRDKWGGGSNVILANGEKAEYRDNLTRTFIHTPFIGDTISLLNDKLTIDGGVKISIINRQGRNYLPDTSTGKNINQTYREVLPSGSIRYKINDEHQVFFSVATNYRIPMNTSLFDSGSYVAGTGYSNQAVKDLKPETSISEEFGWRYHGKLINTSLTYFHYDFHNRLFSQTVIDPNNPTSYYSRSINGGNQTTNGVDFEIGTRAIYNIRPYVSAEYIDARNRSNLAASAAGVSAILPTKGKFAPQTPRYQVGFGLDYDNGHIFGNFSLKYVGSQYSTFMNDEQVPSYVRMNIGGGYRFKSWGGLKSPTIRFNLSNITNKHYLNYASGLQTNAQYAKALDGQMVKGSAPTYSIASPFSAMFSISSGF
>NC_013355.1|WP_012817482.1|1250047_1250842_+|phosphatase-PAP2-family-protein
MIKVPRFICMIALTSGVLASGLSQSVSAHTEKSEPSSTYHFHSDPLLYLAPPPTSGSPLQAHDDQTFNSTRQLKGSTRWALATQDADLHLASVLKDYACAAGMNLDIAQLPHLANLIKRALRTEYDDIGRAKNNWNRKRPFVDTDQPICTEKDREGLGKQGSYPSGHTTIGWSVALILAELIPDHAANILQRGQIFGTSRIVCGAHWFSDVQAGYIMASGEIAALHGDADFRRDMELARKELEKARTSAHTPDDLLCKIEQSAR
>NC_013355.1|WP_011240096.1|1248946_1249891_+|metallophosphoesterase
MISFNRRRFLSLSAGATFAAATAPRLYAGVPNRPPLRSHQSFTFVFITDTHLQPELNGAEGCHEAFLKARQFPADFAIHGGDHVFDALGVNANRATMLADLYKRTADDLRLPVYNTMGNHDCFGIYKESGAQPTDPFYGKKYFQDNFGQTYYSFDHKGVHFVILDSIGITEDRSYEGRVDAEQFNWLSRDLAAQPVGTPIIVSTHIPIMNAIDYASVPLNKMKHHSLSVINAADILELFDHYNVIGVFQGHTHVVERVEWHGVPYITGGSVCGNWWHGTRYGTPEGFMVVKVEKGKVIPHYESYGFHTIDPRNT
>NC_013355.1|WP_012817481.1|1247620_1248439_-|sel1-repeat-family-protein
MKKILLLWVVVFSFVASRTQMQIRKELESFQSKYAALIKKPVQEKSSGRRLVVEKDSIPPDPPLRYQILLHPQEAAKKGDAEAQMFLGKSYLAGRSDVPKNSKQAVFWFQKSANQGYAEGEVELADAYHNGTGVGRDEAKAAFWYQKAAAQNNIEAEARLGFVYHQGRGLSKDEKMSFFWFDKAAHQGSLLAQTMVGVAYYYGSGVPQDKGRAFMWYQKAAHQGDVMAQYLLGMAYLKGEGVARSKRDGVFWLQRAAAQGDYNAFKILQRLQ
>NC_013355.1|WP_044098896.1|1246667_1247390_-|sel1-repeat-family-protein
MKRMLVLTAALLPVFAQPAFARIGVGRVVKMTRDGLKSPLQKAAERGDAKAQYALGNAYSKGQDVSKSDEQAVSWYQKSASQGYAPAQAALGYAYSSGLGVPHDDQQAVSFFQKAANQGNASAQYNLGMAYSNGQGVPHSDEEAASWYQRAAHQGYAPAEFNLGAAYYHGEGVVQDYGQAVFWYQKAAEQGDAKAQTALGVAYITGRGVAKSRDNALIWIQKAADQGDVTAQKILPALKK
>NC_013355.1|WP_012817479.1|1245121_1246489_-|sel1-repeat-family-protein
MKKILLLSVLLSSSVTPSMAAREKPHVVESDQIPLKQAAEAGDIAAQSNLGLAYYVGAAVPKDAAMAAFWFEKAASKGFSAAQYNLAGLYSTGEGVAQSDKQAAFWYEKAAEQGIDEAEYNLALAYEQGKGVEQNYERALFWLKKAADQNFFKAETHLGLAYQAGIMLPRDDKKAVALFMKADRQAYYAEAQMALGNAYRRGAGVKQDDQKAVSYYQKAADQGDGEALTALGVFYMTGRGVPQNYERGLDCFRKAADKDVSAAEDNLGNAYRHGYGVPKDDEKAVYWYQKAADKGDAEAEYNLGLAYRKGEGISQDDAKAAFWYKKAADQGHVKAQLNMGFAYYQARGVAQDYARGIFLYRKAAEQGDSKAEYNLAIAYYNGVGEPKDLAQSIYWFQRAASHGEMSAQYNLGAFYMRGEGVPKDRNEAIFWLEKAAAQGDVEAQSTLHNLDHYPL
>NC_013355.1|WP_012817478.1|1244159_1244984_-|sel1-repeat-family-protein
MRKFLFFTAVFLPFVANPVQAQTAKSTKVVAGKTALSLEQKARAGNPKAQTDLGTAYYNGQGMAQDYKQAISWYQKAANQGYPLAQYYLGNACLQGIGVTQSDEQAVSWYQKAANQGLAEAQYSLAIAYYTGRGVTQNYGQASFWFQRSANQGFVPAQFYLGVMYRNGAGIPEDDDRALFWFHKAADKGYADAQYNLGLIYHEGKVVKKDEKQATFWYQQAANQGLVEAEFNLGIAYLKGQGVQKDKDKATFWLEKAADKGDSHAQDVLEMMNK
>NC_013355.1|WP_012817477.1|1243368_1243977_-|sel1-repeat-family-protein
MKKRIILLGLLLSVGGQIVYSQVRKTPSIFSQKKLYELKQAADQGDAEAETALGEAFDFGKITPQDYQKAFFWYQKAADQAVAEAQYNLGGLYYKGAGRPKDGEKAVYWYRKAADQGYIDAQRNLALLYAKGELVPQSDEQAVYWYQKAADQGNADAQRALGSAYALGKGVPRNKEKALFWIGKAADQGDAEAQKLLAMLAR
>NC_013355.1|WP_012817476.1|1242559_1243261_-|sel1-repeat-family-protein
MFFVPLVALSLSVSPLTMQADKERYDREMISSLEVRAKAGNSLAEEVLGEAYAHGRGRPQDDEKAVYWYQKAADKGMKESQYNLGDAYLHGRGVGVDYEKAAFWYRKAADQNFIQAQYNLGLLYVKGQGLPKSDEHAAFWWQKAAEQGEAKAQFNLGVFYHNGRAVPKNDARAIFWMEQAAHQGLVEAQMLLAMAYASGQGAPKDKEKAVFWYQKAADQGNAAAQKALQALSY
>NC_013355.1|WP_011240092.1|1256646_1257120_+|Cys-tRNA(Pro)-deacylase
MTKKTRGTAFLEKAGIAFTVHPYDYDPKAPAAGLQAAEALQQPAEIVYKTLMTEVDGKPVCVVVQVNHEVSMKKLAAAAGGKSANMIKPVDAERMTGYHVGGISPFGQKKRVPVIFDESAFQAEKIFINGGQRGVLVALAPEDARRAVDGKIASVAN
>NC_013355.1|WP_012817485.1|1257132_1258716_+|ATP-binding-protein
MAINKERDEPFSYLWQILLFLTDLPLQKRTSLAQRCRMTVMIDMGKDPKGQVVPMDLEELLATRLLVQGNSGSGKSHLLRRMLEKSARFVQQIVIDPEGDFVTLAERFPHVAVEAAAYNESEIRVLAQRIREHRVSVVLNLEGLDVDNQMKCAAWFLATLFDAPRDHWYPAIVVVDEAQIFAPAQAGEVSDEARRLSLAAMTNLMCRGRKRGLAGVIATQRLAKLAKNVAAEASNFLMGRTFLDIDMARAADLLGMDRRQAESIRDLERGHFLALGPALCRRPIAVKIGEVETKSRTGGFKLMPLPDSKNSNPEDLLFSEPEEPALPLASPEPPPPPSSSQLMELLQKEKEEEAKIAEAEAAENPVDNSQKEALIDALLSSIVEEEENAYRQANLLYPEFTIGCRMHGLSTPPLDLTAFTKRLTIAKAGLSNDDLQDELWQPALKAASILEDDIQAVFLFLAKTAKENAPCPDDEMIARIYGTRSAGRARRLIGYMENQGIIAIRTDFGGRRSITLPALGWTTSTAA
>NC_013355.1|WP_014848986.1|1258982_1259315_-|hypothetical-protein
MSHKKLEVSAGIRHRMAAEIMDHMNYMVDDPDQLSVKPANALEHIFLYEDSGAVIAEIPVVFKGESGRVLYDISHNRLVHSDIKHDQLKEMVSSKMPDFKEELLEYFREN
>NC_013355.1|WP_012817486.1|1259504_1260854_-|replication-associated-recombination-protein-A
MDDLFNSVEPLVFTENEKQPLPENRPLADILRPKHLSDVIGQAHVTGENGIIGRMVAAGRLSSLILWGPPGTGKTSIAQLLAESVGMRFEMVSAIFSGVADLKKIFLKAEHHRQQGRQTLLFIDEIHRFNKGQQDSFLPYIENGTFVLVGATTENPSFALNAALLSRAQVVTLNRLDEEALGLLLERAETVSGQLLPVDEDARKALIASADGDGRFLLNQAEILLAMNLTKSLSVPELAQILQKRMAIYDKDRDGHYNLISALHKSVRGSDPQAALYYLSRMLVAGEDPLYLLRRLTRMANEEVGLADPRAMEQCIAAKETYQLLGSPEGELAIAQACVYVATAPKSNAIYKAYNQAMALARESGSVLPPPNILNAPTEMMKQQGYGEGYHYDHDMPDAFSGDNYWPENLPPVTLYQPNIRGYEKHITERLAFWEHLRQERKKGKPSGK
>NC_013355.1|WP_012817488.1|1261121_1262189_-|tRNA-dihydrouridine-synthase
MKTEIPYYNPELSYEDNYKEGPFGYFADIVEKPDPSFAVSVKKSVSFLGCSVDLPFGIPAGPLLNSRYIKAAFHAGFDLCVYKTVRTQEHKSHPLPNVLAIHPEGVLSADCEAVLADTRYNQPLSITNSFGVPSFNPDIWQSDMAEAVKAASDHQVMIGSFQGTRGKGKIEEDYALAARMVAETGAPVLEANLSCPNEGVNSLLCFDAPLVQKIVEAIKVAVPDRPLLIKTAYFKDNAKLADLVSRVGHLVSGFSTINTLSARPLDEKGQAALSPSRPEGGVCGDAIRWAGLEMVQRLAAFREEKSLDYAIVGVGGVNKPEHYKAYIEAGANAVMTATGSMWNPHLAEETKKFLA
>NC_013355.1|WP_012817489.1|1262349_1263516_-|Na+/H+-antiporter-NhaA
MRVSIRRFFSGASGGAIILLLSALLGLLLSNSFLSESYFKVLHLKMPFLALDDAPNLAEFISIAPMSLFFFVVIAEIKEEIISGHLASFRRVILPLISALGGMMIPACLYGLITSGHLEVSRGWAIPIATDAAFTLPIILALGRHVSEGARVWLMALAIFDDLLGIVVIALFYASHLNGYAFFAAVLITAVMIGLNKKSVQNLWVYASAGVVLWLALLVSGLHPTIAGVITGLALPSVADQPEKASPLERGKQIIAPWVTWLILPLFGFVSMGMSLSAMSFHALLAPVPLGVALGLFLGKPIGVFGATIMATRLKIATLPKGTSLQMLFGLSLLCGIGFTISLFIAELAFSGSDFLVPAKYGILMGSLLSALAGWLWLRFLKFPAKGV
>NC_013355.1|WP_011240086.1|1263674_1265312_-|hydroxylamine-reductase
MLCFQCEQTHSGTGCVIRGVCTKTPEVAAIQDLMIFASAGLSYVAKKLPDSCEAERKEAASLVIQALFSTVTNVNFDADVLTKALYHLVDFRDALKAKLPEDVELPLAATLDFSRDRETLVKQGESYGIASRQKTLGIDVTGLQELLTYGMKGMAAYAHHAAVLDYRDPDVDNFLLEGMAALTDHSLDIQALLAVVMRCGEASYKTLALLDKANTSSFGHPVPTNVKMGPSKGKAILVSGHDLLDMKELLEQTKDTGIKVYTHGEMLPAHGYPELNKYPHLAGHYGGAWMLQRQEFINFPGPIVMTTNCLMEPRKEYAGRVFTRDLVGWPGLTHLPDRDFSKVIEAALESEGFTEDQESRSHIAGFGHHTVLDSADAVVSAIKKGDIKHFMLVGGCDGIKSGRHYFTDIAEKAPKDWVILTLGCGKFRVTDLDLGKIGDLPRLLDMGQCNDSYSAIRVALALAEAFDTDVNSLPLSLVLSWYEQKAVCVLLALLHLGVKGIRLGPTLPAFITPNMLKILVDNFDIKPIGNSAEEDLQEILAAKAA
>NC_013355.1|WP_012817490.1|1265378_1265816_-|Rrf2-family-transcriptional-regulator
MLSISQSTGYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNGGLRLNRPPETISLLEIVKAIDGKDWGCGCFLGLPGCSNEHPCQMHSFWLKTRPVIVKQLENMTLDKAKHFTEAGWKFRSEEG
>NC_013355.1|WP_012817491.1|1266015_1266852_-|aminotransferase-class-IV
MPIWLNGVLANNAVAEFNLNDKGLLLGYGVFDTALVIADKVAYREAHLEKLTKSCAALSLPVASSFLSEVMEKAAKDLPLGVIRITVTGGVGPRGMAFSPEAKPNVIVSASPIAATIFCPEIRLVLTPLRRNESSFTARIKTLNYLDAIMAVTEARQKSFDDALFLNTAGHVACSSTANLFMIRDGCLITPPVSDGILAGIMRANILRFAKSRDIPVEERSIGYEELLEADDIFLTNSLRLISQVTHLGEVALPRRSAALLALLESMVFDEINYSRSQ
>NC_013355.1|WP_011240083.1|1266817_1267429_-|aminodeoxychorismate/anthranilate-synthase-component-II
MLLMIDNYDSFVVNLARYCERLGRKVSLFRHDKITLEEIEVMSPKAIILSPGPCSPEEAGISLDVLRQFSGKIPILGVCLGHQAIGVAFGGVIARASYPLHGRAVEISHVGKRLFKDIPNPFKAARYNSLIIQKTEEMEQHLTVDALSPEGEIMALSHKSHPTYGIQFHPESVLTEYGDALLSRFFDLEEAFYADMAERCISQ

Crispr_ID: NC_013355_3

• CRISPR_ID: NC_013355_3
• CRISPR_location: 1909883-1911666
• CRISPR_type: Orphan
• Repeat_type: I-F
• Spacer_info: 29 spacers

Consensus repeat of NC_013355_3

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

spacers of NC_013355_3

>3.1|1909911|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
GCAACGACTCATTGCGGCTTTGCTGACTTTAC
>3.2|1909971|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
CCTATGATCAATGGTGTCCCGTTATACAGACA
>3.3|1910031|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATTGGCGAGCGCATCAGCCGCCCATCGCCCAAT
>3.4|1910092|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TGTTGGTCGCTTTCTGATTATTGAGTATCGCG
>3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TAGATGTTAGTGTCTTTTCTGACGGGTTTGTT
>3.6|1910212|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
GTCTGTCTTCTATGTCCGGTCTTTTGAAGATT
>3.7|1910272|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ACCCGACCGCAGGAACATATTGGTCAGATCGC
>3.8|1910332|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TGAAGATACATAATGTTAACAATGGGCTGATGA
>3.9|1910393|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATGCACAGGCGACTATTTTTAGATTTTGCAGG
>3.10|1910453|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AATTGGCTTATTCTCTAATAACGTTTCGACAT
>3.11|1910513|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ACAAAAGTCTCAACGGCCTCGTTTACATATTCA
>3.12|1910574|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AAATTTCGTATAGCATCTTGTCTGAAATAAGCT
>3.13|1910635|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ACTTATTGACCCGATTTATACAGATATTGAAA
>3.14|1910695|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AAAACTTAGTGTTAGGCAAAAAGCCTTCCGTTC
>3.15|1910756|38|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TCCTCGTAACCTTCATCGGTGCCGTTGTATTCGTCGAG
>3.16|1910822|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATGACATAGCGCTCCCGCAGTTCTTTTTCTAC
>3.17|1910882|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AGAATTGATCTTCTCTTCGCTGTTGCCACCCTT
>3.18|1910943|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TTTGCCATTTTGAAGCCTTTTGTTTAATTCCT
>3.19|1911003|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
GCGGCGGCTCTAATGCAACAGAGGGCGGAGCA
>3.20|1911063|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TTTCCACCTTTAATTTGCACGTCCTCACGGTGA
>3.21|1911124|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
GAAAACGCCCCTGAATTGCCGCTTGATCGTCT
>3.22|1911184|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATACGGACATCGCAAAACTCACTCGTAAACTG
>3.23|1911244|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TTGTTGTAGCGCAGACCTTTTTCGGAGGTTTTA
>3.24|1911305|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
CCATCTGGCGTAACATTGCGCTTATAGCCGTT
>3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATCAGCAAGCACTAATTCACCATCTTTGAAAT
>3.26|1911425|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TCTAAGACGCTTACGTCTGACAACATTCAGTCG
>3.27|1911486|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
AGAACGCGGATTTCATCGGCTTTTGGGGCGTG
>3.28|1911546|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT
ATAAATCACCAATAGCATCTAAAATTAACCTT
>3.29|1911606|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT
TCCAGTAATTGACTGTCCAGCAATGTTTCCGGC

CRISPR arrays and Neighbor proteins around NC_013355_3

CRISPR arrays

The CRISPR arrays of NC_013355_3

>merge|NC_013355|3|1909883-1911666|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAACGCAACGACTCATTGCGGCTTTGCTGACTTTACTTTCTAAGCTGCCTGTGCGGCAGTGAACCCTATGATCAATGGTGTCCCGTTATACAGACATTTCTAAGCTGCCTGTGCGGCAGTGAACATTGGCGAGCGCATCAGCCGCCCATCGCCCAATTTTCTAAGCTGCCTGTGCGGCAGTGAACTGTTGGTCGCTTTCTGATTATTGAGTATCGCGTTTCTAAGCTGCCTGTGCGGCAGTGAACTAGATGTTAGTGTCTTTTCTGACGGGTTTGTTTTTCTAAGCTGCCTGTGCGGCAGTGAACGTCTGTCTTCTATGTCCGGTCTTTTGAAGATTTTTCTAAGCTGCCTGTGCGGCAGTGAACACCCGACCGCAGGAACATATTGGTCAGATCGCTTTCTAAGCTGCCTGTGCGGCAGTGAACTGAAGATACATAATGTTAACAATGGGCTGATGATTTCTAAGCTGCCTGTGCGGCAGTGAACATGCACAGGCGACTATTTTTAGATTTTGCAGGTTTCTAAGCTGCCTGTGCGGCAGTGAACAATTGGCTTATTCTCTAATAACGTTTCGACATTTTCTAAGCTGCCTGTGCGGCAGTGAACACAAAAGTCTCAACGGCCTCGTTTACATATTCATTTCTAAGCTGCCTGTGCGGCAGTGAACAAATTTCGTATAGCATCTTGTCTGAAATAAGCTTTTCTAAGCTGCCTGTGCGGCAGTGAACACTTATTGACCCGATTTATACAGATATTGAAATTTCTAAGCTGCCTGTGCGGCAGTGAACAAAACTTAGTGTTAGGCAAAAAGCCTTCCGTTCTTTCTAAGCTGCCTGTGCGGCAGTGAACTCCTCGTAACCTTCATCGGTGCCGTTGTATTCGTCGAGTTTCTAAGCTGCCTGTGCGGCAGTGAACATGACATAGCGCTCCCGCAGTTCTTTTTCTACTTTCTAAGCTGCCTGTGCGGCAGTGAACAGAATTGATCTTCTCTTCGCTGTTGCCACCCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTGCCATTTTGAAGCCTTTTGTTTAATTCCTTTTCTAAGCTGCCTGTGCGGCAGTGAACGCGGCGGCTCTAATGCAACAGAGGGCGGAGCATTTCTAAGCTGCCTGTGCGGCAGTGAACTTTCCACCTTTAATTTGCACGTCCTCACGGTGATTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAACGCCCCTGAATTGCCGCTTGATCGTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACATACGGACATCGCAAAACTCACTCGTAAACTGTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGTTGTAGCGCAGACCTTTTTCGGAGGTTTTATTTCTAAGCTGCCTGTGCGGCAGTGAACCCATCTGGCGTAACATTGCGCTTATAGCCGTTTTTCTAAGCTGCCTGTGCGGCAGTGAACATCAGCAAGCACTAATTCACCATCTTTGAAATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCTAAGACGCTTACGTCTGACAACATTCAGTCGTTTCTAAGCTGCCTGTGCGGCAGTGAACAGAACGCGGATTTCATCGGCTTTTGGGGCGTGTTTCTAAGCTGCCTGTGCGGCAGTGAACATAAATCACCAATAGCATCTAAAATTAACCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACTCCAGTAATTGACTGTCCAGCAATGTTTCCGGCTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_013355|3|3|1909883-1911666|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAACGACTCATTGCGGCTTTGCTGACTTTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCTATGATCAATGGTGTCCCGTTATACAGACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGGCGAGCGCATCAGCCGCCCATCGCCCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTGGTCGCTTTCTGATTATTGAGTATCGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGATGTTAGTGTCTTTTCTGACGGGTTTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCTGTCTTCTATGTCCGGTCTTTTGAAGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCCGACCGCAGGAACATATTGGTCAGATCGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAAGATACATAATGTTAACAATGGGCTGATGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGCACAGGCGACTATTTTTAGATTTTGCAGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATTGGCTTATTCTCTAATAACGTTTCGACAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACAAAAGTCTCAACGGCCTCGTTTACATATTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATTTCGTATAGCATCTTGTCTGAAATAAGCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTTATTGACCCGATTTATACAGATATTGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAACTTAGTGTTAGGCAAAAAGCCTTCCGTTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCTCGTAACCTTCATCGGTGCCGTTGTATTCGTCGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGACATAGCGCTCCCGCAGTTCTTTTTCTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAATTGATCTTCTCTTCGCTGTTGCCACCCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGCCATTTTGAAGCCTTTTGTTTAATTCCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGGCGGCTCTAATGCAACAGAGGGCGGAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTCCACCTTTAATTTGCACGTCCTCACGGTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAACGCCCCTGAATTGCCGCTTGATCGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATACGGACATCGCAAAACTCACTCGTAAACTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTGTAGCGCAGACCTTTTTCGGAGGTTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATCTGGCGTAACATTGCGCTTATAGCCGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCAGCAAGCACTAATTCACCATCTTTGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTAAGACGCTTACGTCTGACAACATTCAGTCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAACGCGGATTTCATCGGCTTTTGGGGCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAAATCACCAATAGCATCTAAAATTAACCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCAGTAATTGACTGTCCAGCAATGTTTCCGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_013355|3|3|1909883-1911666|CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAACGACTCATTGCGGCTTTGCTGACTTTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCTATGATCAATGGTGTCCCGTTATACAGACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGGCGAGCGCATCAGCCGCCCATCGCCCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTGGTCGCTTTCTGATTATTGAGTATCGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGATGTTAGTGTCTTTTCTGACGGGTTTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCTGTCTTCTATGTCCGGTCTTTTGAAGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCCGACCGCAGGAACATATTGGTCAGATCGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAAGATACATAATGTTAACAATGGGCTGATGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGCACAGGCGACTATTTTTAGATTTTGCAGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATTGGCTTATTCTCTAATAACGTTTCGACAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACAAAAGTCTCAACGGCCTCGTTTACATATTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATTTCGTATAGCATCTTGTCTGAAATAAGCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTTATTGACCCGATTTATACAGATATTGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAACTTAGTGTTAGGCAAAAAGCCTTCCGTTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCTCGTAACCTTCATCGGTGCCGTTGTATTCGTCGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGACATAGCGCTCCCGCAGTTCTTTTTCTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAATTGATCTTCTCTTCGCTGTTGCCACCCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGCCATTTTGAAGCCTTTTGTTTAATTCCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGGCGGCTCTAATGCAACAGAGGGCGGAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTCCACCTTTAATTTGCACGTCCTCACGGTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAACGCCCCTGAATTGCCGCTTGATCGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATACGGACATCGCAAAACTCACTCGTAAACTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTGTAGCGCAGACCTTTTTCGGAGGTTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATCTGGCGTAACATTGCGCTTATAGCCGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCAGCAAGCACTAATTCACCATCTTTGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTAAGACGCTTACGTCTGACAACATTCAGTCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAACGCGGATTTCATCGGCTTTTGGGGCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAAATCACCAATAGCATCTAAAATTAACCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCAGTAATTGACTGTCCAGCAATGTTTCCGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_013355|3|3|1909883-1911666|CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCAACGACTCATTGCGGCTTTGCTGACTTTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCTATGATCAATGGTGTCCCGTTATACAGACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGGCGAGCGCATCAGCCGCCCATCGCCCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTGGTCGCTTTCTGATTATTGAGTATCGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAGATGTTAGTGTCTTTTCTGACGGGTTTGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTCTGTCTTCTATGTCCGGTCTTTTGAAGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCCGACCGCAGGAACATATTGGTCAGATCGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAAGATACATAATGTTAACAATGGGCTGATGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGCACAGGCGACTATTTTTAGATTTTGCAGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATTGGCTTATTCTCTAATAACGTTTCGACAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACAAAAGTCTCAACGGCCTCGTTTACATATTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATTTCGTATAGCATCTTGTCTGAAATAAGCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTTATTGACCCGATTTATACAGATATTGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAAACTTAGTGTTAGGCAAAAAGCCTTCCGTTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCTCGTAACCTTCATCGGTGCCGTTGTATTCGTCGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGACATAGCGCTCCCGCAGTTCTTTTTCTAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAATTGATCTTCTCTTCGCTGTTGCCACCCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGCCATTTTGAAGCCTTTTGTTTAATTCCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGGCGGCTCTAATGCAACAGAGGGCGGAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTCCACCTTTAATTTGCACGTCCTCACGGTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAACGCCCCTGAATTGCCGCTTGATCGTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATACGGACATCGCAAAACTCACTCGTAAACTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTGTAGCGCAGACCTTTTTCGGAGGTTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATCTGGCGTAACATTGCGCTTATAGCCGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATCAGCAAGCACTAATTCACCATCTTTGAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTAAGACGCTTACGTCTGACAACATTCAGTCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGAACGCGGATTTCATCGGCTTTTGGGGCGTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATAAATCACCAATAGCATCTAAAATTAACCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCCAGTAATTGACTGTCCAGCAATGTTTCCGGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_013355.1|WP_011241315.1|1919599_1920268_-|ATP-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234971
NC_013355.1|WP_193339743.1|1921026_1923189_-|squalene--hopene-cyclase	unknown	unknown	gnl|CDD|239222
NC_013355.1|WP_044098935.1|1900624_1901416_+|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl|CDD|131546
NC_013355.1|WP_011241316.1|1918317_1919610_-|histidinol-dehydrogenase	unknown	unknown	gnl|CDD|234853
NC_013355.1|WP_015740333.1|1914089_1915478_-|glutamate--cysteine-ligase	unknown	unknown	gnl|CDD|130503
NC_013355.1|WP_011241321.1|1912140_1913667_-|amidophosphoribosyltransferase	unknown	unknown	gnl|CDD|236384
NC_013355.1|WP_011241326.1|1905189_1905513_-|YnfA-family-protein	unknown	unknown	gnl|CDD|235016
NC_013355.1|WP_015740330.1|1908315_1909020_-|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|212491
NC_013355.1|WP_011241318.1|1916860_1917826_-|thiamine-phosphate-kinase	unknown	unknown	gnl|CDD|273589
NC_013355.1|WP_015740327.1|1901574_1903998_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|238657
NC_013355.1|WP_015740337.1|1923219_1923786_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380063
NC_013355.1|WP_011241324.1|1906773_1907757_-|DUF481-domain-containing-protein	unknown	unknown	gnl|CDD|377313
NC_013355.1|WP_015740331.1|1909455_1909689_-|hypothetical-protein	unknown	unknown	unknown
NC_013355.1|WP_015740328.1|1904010_1905183_+|phosphotransferase	unknown	unknown	gnl|CDD|225213
NC_013355.1|WP_015740329.1|1905982_1906549_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NC_013355.1|WP_193339748.1|1898394_1900641_+|formate-C-acetyltransferase	unknown	unknown	gnl|CDD|153087
NC_013355.1|WP_014501145.1|1915782_1916553_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl|CDD|236959
NC_013355.1|WP_015740335.1|1920356_1920662_-|BolA-family-transcriptional-regulator	unknown	unknown	gnl|CDD|376601
NC_013355.1|WP_011241323.1|1907781_1908249_-|RNA-pyrophosphohydrolase	unknown	unknown	gnl|CDD|239643
NC_013355.1|WP_015740334.1|1917844_1918318_-|transcription-antitermination-factor-NusB	unknown	unknown	gnl|CDD|234686

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_013355.1|WP_011241315.1|1919599_1920268_-|ATP-phosphoribosyltransferase	gnl|CDD|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	1.37428e-112
NC_013355.1|WP_193339743.1|1921026_1923189_-|squalene--hopene-cyclase	gnl|CDD|239222	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.	0
NC_013355.1|WP_044098935.1|1900624_1901416_+|pyruvate-formate-lyase-activating-protein	gnl|CDD|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	2.9435e-144
NC_013355.1|WP_015740333.1|1914089_1915478_-|glutamate--cysteine-ligase	gnl|CDD|130503	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NC_013355.1|WP_011241321.1|1912140_1913667_-|amidophosphoribosyltransferase	gnl|CDD|236384	PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.	0
NC_013355.1|WP_011241326.1|1905189_1905513_-|YnfA-family-protein	gnl|CDD|235016	PRK02237, PRK02237, YnfA family protein.	2.17346e-38
NC_013355.1|WP_015740330.1|1908315_1909020_-|SDR-family-oxidoreductase	gnl|CDD|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.17479e-30
NC_013355.1|WP_011241316.1|1918317_1919610_-|histidinol-dehydrogenase	gnl|CDD|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_013355.1|WP_015740327.1|1901574_1903998_+|TonB-dependent-receptor	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.34028e-38
NC_013355.1|WP_015740337.1|1923219_1923786_-|TetR-family-transcriptional-regulator	gnl|CDD|380063	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in CgmR (C. glutamicum multidrug-responsive transcriptional repressor), previously called CGL2612 protein. CgmR (CGL2612) from Corynebacterium glutamicum is a multidrug-resistance-related transcription factor belonging to the TetR family. It regulates expression of the immediately upstream gene cgmA (cgl2611) by binding to the operator cgmO in the cgmA promoter. The cgmA gene encodes a permease belonging to the major facilitator superfamily, a protein family composed of bacterial multidrug exporters, and the pair of CgmR and CgmA confers multidrug resistance on C. glutamicum.	4.66296e-12
NC_013355.1|WP_011241324.1|1906773_1907757_-|DUF481-domain-containing-protein	gnl|CDD|377313	pfam04338, DUF481, Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.	1.15385e-57
NC_013355.1|WP_011241318.1|1916860_1917826_-|thiamine-phosphate-kinase	gnl|CDD|273589	TIGR01379, Thiamine-monophosphate_kinase, thiamine-phosphate kinase. This model describes thiamine-monophosphate kinase, an enzyme that converts thiamine monophosphate into thiamine pyrophosphate (TPP, coenzyme B1), an enzyme cofactor. Thiamine monophosphate may be derived from de novo synthesis or from unphosphorylated thiamine, known as vitamin B1. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	3.56412e-120
NC_013355.1|WP_015740328.1|1904010_1905183_+|phosphotransferase	gnl|CDD|225213	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only].	6.02775e-17
NC_013355.1|WP_015740329.1|1905982_1906549_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	4.73607e-43
NC_013355.1|WP_193339748.1|1898394_1900641_+|formate-C-acetyltransferase	gnl|CDD|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NC_013355.1|WP_014501145.1|1915782_1916553_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl|CDD|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	9.83284e-76
NC_013355.1|WP_015740335.1|1920356_1920662_-|BolA-family-transcriptional-regulator	gnl|CDD|376601	pfam01722, BolA, BolA-like protein. This family consist of the morphoprotein BolA from E. coli and its various homologs. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5.	1.35918e-28
NC_013355.1|WP_011241323.1|1907781_1908249_-|RNA-pyrophosphohydrolase	gnl|CDD|239643	cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies.	7.05806e-74
NC_013355.1|WP_015740334.1|1917844_1918318_-|transcription-antitermination-factor-NusB	gnl|CDD|234686	PRK00202, nusB, transcription antitermination factor NusB.	3.14112e-43

Protein sequences

>NC_013355.1|WP_015740331.1|1909455_1909689_-|hypothetical-protein
MKKILLLIAINLIFSANLLSLTACKKEHVKKTWPDNTKCESLLNEDDINDCIMQQRSKITHQPNPREDSKSFINTDF
>NC_013355.1|WP_015740330.1|1908315_1909020_-|SDR-family-oxidoreductase
MTHRPLSDQIALVTGASRGIGAATAKALAEAGAHVILVARTATDLDKVEEQIYQKGGSATIAPLDITNSGSCHHLAAAISSRWPALDIMVFAAARYEAQPSIAAASPALQQMLAVNALATQDLLSRFDPLIQESRSAHIIGLTLPKSQAPYPYNGSYYASKMAMEAILLSYGAENAKRDTIKVALAELEAVATEGRKRAFPDEKADLLRSPDEVAKAIVTMIVQDYANGWQGKL
>NC_013355.1|WP_011241323.1|1907781_1908249_-|RNA-pyrophosphohydrolase
MDNLEYRSGVGIMLLNKDNLVFAACRNDMKEEAWQMPQGGLEAKETPEVGVLRELEEETGIPPRMVAIISHTKEWLTYDFPADLQASFFKNKYRGQRQLWFLARYLGRDEDININTDKPEFRAWKWVEPKQLPDLIVAFKKPLYEKILSEFSASL
>NC_013355.1|WP_011241324.1|1906773_1907757_-|DUF481-domain-containing-protein
MQSRTISPWLLWRISQGAVLLSLVPVSEVWAEEPPKLIQEMVTKALALDDPKTVKSIVLIAKKTVPDSAAEIDAMVADYNTKVEAREAEKKRKELRRVADSGMFENWTGSVELGGAKMTGNTRQTAIYGAVALERNGINWTHTVKARTDFQRTYGTTSAERFTASYQPHYKFDERLYMYGLALYERDMFLGYRTRITGGSGIGYKVFDQPNLSLAVEGGPAYRHTIFIDSSRPNGRRIRDTAAMRGSFTTKWVVSPLLTVSEDSSIFFESKDITASSTTSLETKLIGNLSTKLSFSVYYEKDVSASKNPVDTTSRITFAYALGKKKK
>NC_013355.1|WP_015740329.1|1905982_1906549_+|nicotinamide-mononucleotide-transporter
MSVLEWLAVLTSLLGIVFSTRQIRICWLFYGISSLLYGKIFFSIKLYADCLLQIFFFFSSIYGWFHWHHYQKADKMTVITASHKSLLRDIAMAAALSAIFGFYLKNYTDDAFPWLDAILSCYSIVAQFWAARLYKANWFLWIVIDFCYTALFCYRGLWLTAWLYSVFMVMAVIGLKKWQNKNPAVACD
>NC_013355.1|WP_011241326.1|1905189_1905513_-|YnfA-family-protein
MLALLYIPAALAEITGCFSFWAWIRLHKSPLWLLPGIASLLLFAWLLTFSPAENAGKAYAVYGGIYIIMSLLWSWKVEATPPDHWDLIGAAFCLVGAAIILWMPRSL
>NC_013355.1|WP_015740328.1|1904010_1905183_+|phosphotransferase
MAIKDDGMTEAAHKAVHQFGVSGYQTERDWPYLTILEINAVLASFSGQGKAIKILSHSRRPYSAAALFETDQKQTFFIKRHHHKIRNKTELLKEHLFARHLAQKSFPISTPMMADHNQTVIEKEPWIYEIHPQAQGVDIYQDVMSWEPFFNRDHAHEAGRMLALFHQAAQGFDESPRHHALLVSAGDTLLHDDFIKALSEWMTAQPELLKQLEGKNWQQDITENILPFHHQLQPLIADITPLWGHGDWHSSNLMWTGSNPKAKVSCVLDLGMADYSSAMFDLATAIERNVIAWLDMDSRQDIVIYDQLFALLRGYHHIKPLSQTDKQLLSAFMPLLHVEYALSEIVYFGALLQDKTSADIAYYDYLLGHSRWFSGQEGQQLLQKIIHFEA
>NC_013355.1|WP_015740327.1|1901574_1903998_+|TonB-dependent-receptor
MTYRDMTASEWRKYYQHFLVTSVFLAGISGVFPIHPAHAETQESPKSSDKTSSKNDAIIVTGRPVFKTANGFSVNDIGGGLIQKETETRSVSHISTDFIQKQAPTANAFDLVAMLPGANVTSSDPLGFSTQTNITIRGLSGDAIGYVLEGMPLNDVAYYTGYPTQFADSENYQQIGLAQGSADLDSPVLNAAGGVMNLNFRKPADKMGGYADFSYGSYNTNRQFLRFDMGEIGHSGVKGFVSYSHARTDNWRGAGYDEKQHVDFKFLKEWGQDSHVSLLGTWNKGITSYYPQVDKQSWKENGISGSNNLASRYNVNNDAAGSDYWRLYRAPEEIFYLAAPIDVRLASNLKLKVTPYGQWDRGNVPAGSTLNNSELWNGTEAIAGTINLPNATDGTATVRSNYTQRSARAGVNASATWSLKNHDLTLGYWFDYSADKEQNSFTSVDSNGHASNIWADRHSTLIKMPDGSPLLGTNNRTHTYVNAVYLGDHMTFLQNRLTFDIGFKEVIMTRHGYNYLPGSQHKANFSTSEPLPRLGLRYQIDSKSHVFFSASTNFRTADETALYNSYDPTSGDIIVNGNKNLKNEYSVSEELGYRYSDALVTGSLTLFNYNFSNRQLQTVIVQNGSHIQSTINAGNQISRGVDFEIGLAPWHHISPYLSGEYLYTRQTSDLTVDDDLLPTKGKRAVRSPAFQGSLGVTYDDHHFFGMASVKYTGSQYGSFMNDEKIPAYVTGNISVGYRFTQEAFLKHPEIRLNFINIGNNHYLSGIASPTANAQDTVGRNGTVISGSAPQYYIGGGFAVLASLSSAF
>NC_013355.1|WP_044098935.1|1900624_1901416_+|pyruvate-formate-lyase-activating-protein
MALIIKRPAVTSLVEEAGCDNTLKGRIHSTEIGGAVDGPGVRFVLFLAGCALRCQYCHNPDSWFLKNGRAVTLAEMMEEVASYADFLKRAGGGITISGGEPLVQPEFTGALLKAAKYLGLHTAIDTAGFLGAQADDALLSNTDLVLLDIKAFNDKRYKALTGVELQPTLAFAKWLAALKKPVWLRYVLVPGLTDNFNEIANLADFAATLGNIERVDVLPFHKMGEYKWKASGLAYKLGDTQPPSPALVEDVRGIFRDNGLNLS
>NC_013355.1|WP_193339748.1|1898394_1900641_+|formate-C-acetyltransferase
MDSALDPWRGFKGRKWQREIDTRDFILSNVTSYTGNSDFLAGITPKTTKLWEKLQVSLEAERKTQGGVLDVDTSTVSNITAHAPGFIEKDLEVVVGLQTDAPLKRAIMPFGGYRMIKKGLEAYGFKEDESLSKIFPALRKTHNDGVFDVYTPEIMACRRSGIITGLPDAYGRGRIIGDYRRVALYGVDCLIEDKKEQGKRLERNPFDEETIKLREEVAEQIKALHELAAMAKSYGYDISQPAVTAQQAVQWTYFAYLAAVKEANGAAMSLGRVSTFLDIYIERDLKEGRITEAEAQELVDQFVMKLRIVRFLRTPEYDQLFSGDPTWVTESLGGMAIDGWTLVTKSSFRFLHTLENLGPAPEPNLTVLWSENLPKGFKDYCAKISIDTSSIQYENDDLMRSYWGDDYGIACCVSAMRIGKQMQFFGARANLAKTLLYAINGGRDEKSGVQVAPAFAPVTGDILDYEDVKSRMVQMMEWLASVYINALNAIHFMHDKYMYERVEMALHDLEILRTMACGIAGLSVAADSLSAIKHAKVKIIRDERGLATDFEIEGDYPAYGNNDDRADEIAIWLVETFMNMLRKQTTYRRSVPTQSILTITSNVVYGKKTGNTPDGRRAGEPFAPGANPMHGRDLKGPVASMASVAKLPYAHAQDGISNTFTIVPNALGMNKEERIDNLIGLLSGYFGAGAHHMNVNVFDRNTLLDAVDHPEKYPQLTIRVSGYAVNFVKLTREQQMDVIHRTFHGLDN
>NC_013355.1|WP_011241321.1|1912140_1913667_-|amidophosphoribosyltransferase
MSPSLSSELFSDSISTLTTTTESLDNGASDDTLHEECGVFGIWGADTAAAVVALGLHALQHRGQEAAGITSWDGKNFHSRRAVGHVAGNFDRDDAIRSLPGSCAIGHVRYATTGASTLCNVQPLYAELVSGGFAIAHNGNISNAETLRHQLVRHGSIFQSTSDTETIIHLVATSSYRSLLDRFIDALKQVEGAYSLVCLTPEGMIACRDPLGIRPLVLGKVGETFVVASETVALDIIGGTYIRQVEPGELIIISEKGLQSIHPFKKQKPRPCIFEHVYFSRPDSLIGSTSVYSVRKSIGIELARENPVDADMVIPVPDSGTPAAIGYAQQSSLPFELGIIRSHYVGRTFIQPGDQVRHLGVKLKHNANRALIKGKKLVLVDDSIVRGTTSVKIIRMLRDAGAKEIHLRIASPPTRHSCFYGVDTPERAKLLAAKMTVEQMAEYIGADSLAFISMDGLYRAVGEEARNDAQPQYCDACFTGAYPTPLTDLGELGASEQLVRLSEQVAIA
>NC_013355.1|WP_015740333.1|1914089_1915478_-|glutamate--cysteine-ligase
MSTRQTSSSQNHPIESRDDLLRIFQAGEKPKAQWRVGTEHEKLVYKKQSHQAPSYEEKGGICDLLQGFTRFGWQPIYENDKIIGLSGDDGAISLEPAGQFELSGAPRSTIHESYDEICRHIQQTQEVGDELGLGFLGLGLWPDKKRSDLPLMPKGRYKIMTEYMPKVGKLGLDMMLRTCTIQSNIDYGSEADMVKKFRVSLALQPLATALFANSPFLEGRPNGFSSYRSHIWTDTDPHRTGILPFVFDDDFGYERYIDYMLSVPMYFVYRDGRYIDASGQDFRAFLRGELPALPNEKPILSDWVDHLSTAFPEVRLKSYLEMRGADGASAMMSPALSAFWISILYDSELLDTASDIIKSWSMDDYRNLRNEVPKKGLKTLIGGRQSLLDLGRQLWPLMNDALKRRAILNDKGQDESRYLAPIGEILESGQSLSDRLLARYHQTGNLDFIYQECDWAQPHILS
>NC_013355.1|WP_014501145.1|1915782_1916553_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MVAEPAWPVNTLPRLYVEEKLSLEAVITPDRAQAHYLLSVMRFKMGSQLVLFDNLTGEWLGEVIEAGRKHLQLKITHHLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPVITQRTIVDRVNLERLQAHIVEAAEQCGRTSLSEVTEACSLKSLLAEWPEDRALFFADETGGEPMIEALSKRKMAAAILVGPEGGFTDQERDMINAVKQAVPVSLGPRILRADTAAIAATALWMAAAGDWQKQPRQANL
>NC_013355.1|WP_011241318.1|1916860_1917826_-|thiamine-phosphate-kinase
MSGREQAFITALRQIAGDPAARNLSDDAAVLPRPSGDLVLSHDIIVENVHYFPSDPPETVAQKLVGVNLSDLAAKGAKPIGALMGYSLGPDYKWDQAFLKGLESVCHQYNLPLLGGDTVAVPRHTGHFSAMTVIGLAPSCGVPDRRAAKEGDELWVTSPIGDAGFGLNLLKQKKNINHSAQEKLVQAYRSPEPRLKEGIWLAPHVHAMADISDGLLIDAERIANASGLAVRIRLDRVPLSSEAISCFGDTKSTRLQAVTAGDDYQLIMACAANKRQELLKLSKEKQFDLYRVGQLTAGSGLSLFYGAEPIKQPDRLGYLHG
>NC_013355.1|WP_015740334.1|1917844_1918318_-|transcription-antitermination-factor-NusB
MAQTQKRPHKNARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVANAFYDRQEKNFVNGLLDTVAKKLRSSNNA
>NC_013355.1|WP_011241316.1|1918317_1919610_-|histidinol-dehydrogenase
MLLKLDSRKADFQADFTRLVDERRESEGDVSRDVSAIIADVKKRGDVAIAELTQKFDRHDLNKGGWQLTQEEIKKACDSLPSELMDALKLAATRIRYCHENQLPESSEMTDAAGVRMGVRWQAVEAAGLYVPGGRAAYCSSVLMNAVPAKVAGVKRLVMVTPTPDGFVNPAVIAAAVISEVDEIWKIGGAQAVAALALGTEKIKPVDVVVGPGNAWVAEAKRQLYGQVGIDMVAGPSEIVVVADKDNDPEWLAADLLSQAEHDPTSQSILISDSEDLIEKTIEAVGRRLEKLETQKVARESWDKHGATILVQSLDEAPALVDRLAPEHLELAVADPDALFANVHHSGSVFLGRYTPEAIGDYVGGPNHVLPTGRRARFSSGLSVIDFMKRTTYLNCSQEALSKIGPAAVTLAKAEGLPAHAESVISRLNK
>NC_013355.1|WP_011241315.1|1919599_1920268_-|ATP-phosphoribosyltransferase
MTKPLVFAIPKGRILKEALPMLEAAGIIPEPAFLDKESRLLRFKTNRPDIEIIRVRAFDVATFVAHGAAQMGIVGSDVIEEFSYPELYAPVDLDIGHCRLSIAEPKRLAKDDDPREWSHVRVATKYPHLTHRHFEARGVQAECIKLNGAMEIAPALGLAGRIVDLVSSGRTLEENGLVEVEKIMPISARLIVNRAAFKMRAGDIAPLVENFRRLVGVADNVA
>NC_013355.1|WP_015740335.1|1920356_1920662_-|BolA-family-transcriptional-regulator
MNMTSPSDNNEGPVTRLMRERLEAAFSPETLVIEDDSNKHAGHAGHPRRSESHFTVTLVSQAFENESRISRERMVQKALSDLLPDRIHALRLKLDTPLRQE
>NC_013355.1|WP_193339743.1|1921026_1923189_-|squalene--hopene-cyclase
MNSLSRLLMKKIFGAEKTSYKPASDTIIGTDTLRRPNRRPEPTAKVDKTIFKTMGNSLNNTLVSACDWLIGQQKPDGHWVGAVESNASMEAEWCLALWFLGLEDHPLRPRLGNALLEMQREDGSWGVYFGAGNGDINATVEAYAALRSLGYSADNPVLKKAAAWIAEKGGLKNIRVFTRYWLALIGEWPWEKTPNLPPEIIWFPDNFVFSIYNFAQWARATMVPIAILSARRPSRPLRPQDRLDELFPEGRARFDYELPKKEGINLWSQFFRTTDRGLHWVQSNLLKRNSLREAAIRHVLEWIIRHQDADGGWGGIQPPWVYGLMALHGEGYQLYHPVMAKALSALDDPGWRHDRGESSWIQATNSPVWDTMLALMALKDAKAEDRFTPEMDKAADWLLARQVKVKGDWSIKLPDVEPGGWAFEYANDRYPDTDDTAVALIALSSYRDKEEWQKKGVEDAITRGVNWLIAMQSECGGWGAFDKDNNRSILSKIPFCDFGESIDPPSVDVTAHVLEAFGTLGLSRDMPVIQKAIDYVRSEQEAEGAWFGRWGVNYIYGTGAVLPALAAIGEDMTQPYITKACDWLVTHQQEDGGWGESCSSYMEIDSIGKGPTTPSQTAWALMGLIAANRPEDYEAIAKGCHYLIDRQEQDGSWKEEEFTGTGFPGYGVGQTIKLDDPALSKRLLQGAELSRAFMLRYDFYRQFFPIMALSRAERLIDLNN
>NC_013355.1|WP_015740337.1|1923219_1923786_-|TetR-family-transcriptional-regulator
MARPRTIDRERVLKSAEQLVQRAGATAMTLEAVAKEAGITKGGLQYCFGSKDDLITALIDRWFAAFDCEVKEYSQSDDSPAGEARAYVQASSQIDDATSARIVGMLVTLLQSPNHLKKIQAWYARWMEKNLGQSEEARHIRTMLFAAEGAFFLRSLGFIKMSESEWATVFDDIKKLVPSAQAGRASFK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013355_3	3.10|1910453|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910453-1910484	32	NC_017180	Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB01, complete sequence	19649-19680	0	1.0
NC_013355_2	2.8|1255508|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255508-1255539	32	MG945829	UNVERIFIED: Microviridae sp. isolate 9263-1602, complete genome	5762-5793	6	0.812
NC_013355_2	2.9|1255568|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255568-1255599	32	NC_027331	Citrobacter phage Moon, complete genome	103494-103525	6	0.812
NC_013355_2	2.9|1255568|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255568-1255599	32	MG250484	Citrobacter phage CF1 ERZ-2017, complete genome	103980-104011	6	0.812
NC_013355_2	2.15|1255930|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255930-1255961	32	NZ_CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	19793-19824	6	0.812
NC_013355_2	2.15|1255930|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255930-1255961	32	NZ_CP037902	Cupriavidus metallidurans strain BS1 plasmid p1, complete sequence	355236-355267	6	0.812
NC_013355_2	2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255206-1255238	33	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	20509-20541	7	0.788
NC_013355_2	2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255206-1255238	33	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	385080-385112	7	0.788
NC_013355_2	2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255206-1255238	33	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	137260-137292	7	0.788
NC_013355_2	2.9|1255568|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255568-1255599	32	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	109096-109127	7	0.781
NC_013355_2	2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255748-1255780	33	NZ_CP045330	Labrenzia sp. THAF191b plasmid pTHAF191b_b, complete sequence	72172-72204	7	0.788
NC_013355_2	2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255748-1255780	33	NZ_CP045346	Labrenzia sp. THAF187b plasmid pTHAF187b_b, complete sequence	72172-72204	7	0.788
NC_013355_2	2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255748-1255780	33	NZ_CP045334	Labrenzia sp. THAF191a plasmid pTHAF191a_a, complete sequence	11197-11229	7	0.788
NC_013355_2	2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255748-1255780	33	NZ_CP045383	Labrenzia sp. THAF35 plasmid pTHAF35_c, complete sequence	2282-2314	7	0.788
NC_013355_2	2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255748-1255780	33	NZ_CP019632	Labrenzia aggregata strain RMAR6-6 plasmid unnamed2, complete sequence	51595-51627	7	0.788
NC_013355_2	2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255748-1255780	33	NZ_CP011928	Labrenzia sp. CP4 plasmid pBCL1, complete sequence	41505-41537	7	0.788
NC_013355_2	2.13|1255809|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255809-1255840	32	AP013395	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18	14777-14808	7	0.781
NC_013355_1	1.4|126577|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126577-126608	32	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	61903-61934	8	0.75
NC_013355_1	1.9|126878|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126878-126909	32	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	525998-526029	8	0.75
NC_013355_3	3.18|1910943|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910943-1910974	32	MN693046	Marine virus AFVG_25M413, complete genome	26824-26855	8	0.75
NC_013355_3	3.18|1910943|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910943-1910974	32	MN693008	Marine virus AFVG_117M9, complete genome	26802-26833	8	0.75
NC_013355_3	3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911365-1911396	32	NZ_KY940428	UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence	164195-164226	8	0.75
NC_013355_3	3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911365-1911396	32	NZ_CP047086	Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence	19731-19762	8	0.75
NC_013355_3	3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911365-1911396	32	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	93612-93643	8	0.75
NC_013355_3	3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911365-1911396	32	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	76569-76600	8	0.75
NC_013355_3	3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911365-1911396	32	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	16530-16561	8	0.75
NC_013355_3	3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911365-1911396	32	NZ_CP033789	Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence	21233-21264	8	0.75
NC_013355_3	3.28|1911546|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911546-1911577	32	NC_019149	Staphylococcus aureus subsp. aureus plasmid pKKS49, complete sequence	332-363	8	0.75
NC_013355_1	1.2|126456|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126456-126487	32	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	152534-152565	9	0.719
NC_013355_1	1.5|126637|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126637-126668	32	MT451981	Streptomyces phage Vondra, complete genome	29034-29065	9	0.719
NC_013355_1	1.5|126637|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126637-126668	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2057965-2057996	9	0.719
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	114048-114080	9	0.727
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1578284-1578316	9	0.727
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	181585-181617	9	0.727
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	114048-114080	9	0.727
NC_013355_1	1.13|127119|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR	127119-127150	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	385463-385494	9	0.719
NC_013355_2	2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255206-1255238	33	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	86790-86822	9	0.727
NC_013355_2	2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255206-1255238	33	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	86449-86481	9	0.727
NC_013355_2	2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255206-1255238	33	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	86449-86481	9	0.727
NC_013355_2	2.6|1255388|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255388-1255419	32	NZ_CP014254	Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_02, complete sequence	38819-38850	9	0.719
NC_013355_2	2.8|1255508|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255508-1255539	32	MT774405	CrAssphage cr115_1, complete genome	63351-63382	9	0.719
NC_013355_2	2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1255748-1255780	33	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	14145-14177	9	0.727
NC_013355_3	3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910152-1910183	32	KY653120	Staphylococcus phage IME1348_01, complete genome	30731-30762	9	0.719
NC_013355_3	3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910152-1910183	32	JN192400	Staphylococcus phage vB_SepiS-phiIPLA5, complete genome	15077-15108	9	0.719
NC_013355_3	3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910152-1910183	32	KU598975	Staphylococcus phage CNPx, complete genome	15131-15162	9	0.719
NC_013355_3	3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910152-1910183	32	JN192401	Staphylococcus phage vB_SepiS-phiIPLA7, complete genome	14675-14706	9	0.719
NC_013355_3	3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910152-1910183	32	NC_008723	Staphylococcus phage PH15, complete genome	15778-15809	9	0.719
NC_013355_3	3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910152-1910183	32	DQ831957	Staphylococcus phage CNPH82, complete genome	15131-15162	9	0.719
NC_013355_3	3.7|1910272|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910272-1910303	32	NC_008242	Chelativorans sp. BNC1 plasmid 1, complete sequence	143334-143365	9	0.719
NC_013355_3	3.17|1910882|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910882-1910914	33	NZ_CP029091	Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence	71722-71754	9	0.727
NC_013355_3	3.17|1910882|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910882-1910914	33	NZ_CP027167	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence	43075-43107	9	0.727
NC_013355_3	3.18|1910943|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910943-1910974	32	NC_049404	Lactococcus phage 56003, complete genome	26238-26269	9	0.719
NC_013355_3	3.24|1911305|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911305-1911336	32	NZ_CP042531	Klebsiella aerogenes strain C9 plasmid pC9_001, complete sequence	181350-181381	9	0.719
NC_013355_3	3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911365-1911396	32	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	129666-129697	9	0.719
NC_013355_3	3.27|1911486|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911486-1911517	32	NZ_CP021919	Sagittula sp. P11 plasmid unnamed5, complete sequence	14771-14802	9	0.719
NC_013355_3	3.28|1911546|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1911546-1911577	32	MN694663	Marine virus AFVG_250M439, complete genome	36520-36551	9	0.719
NC_013355_1	1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126516-126548	33	JN797796	Bacillus phage B5S, complete genome	102905-102937	10	0.697
NC_013355_1	1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126516-126548	33	NC_018863	Bacillus phage B4, complete genome	102849-102881	10	0.697
NC_013355_1	1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126516-126548	33	MN153503	Bacillus phage Chotacabras, complete genome	88446-88478	10	0.697
NC_013355_1	1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126516-126548	33	KF669647	Bacillus phage BigBertha, complete genome	87818-87850	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1638094-1638126	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	116770-116802	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1183303-1183335	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	1563046-1563078	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	1610803-1610835	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1364023-1364055	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	209702-209734	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	274628-274660	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	194294-194326	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1480569-1480601	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	1030188-1030220	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	734700-734732	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1068873-1068905	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	99414-99446	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1621180-1621212	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	323813-323845	10	0.697
NC_013355_1	1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126697-126729	33	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	111409-111441	10	0.697
NC_013355_1	1.11|126999|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR	126999-127030	32	NC_009926	Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence	316017-316048	10	0.688
NC_013355_3	3.2|1909971|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1909971-1910002	32	NC_041916	Vibrio phage pTD1 DNA, complete genome	2305-2336	10	0.688
NC_013355_3	3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT	1910152-1910183	32	NC_041884	Acinetobacter phage vB_AbaM_ME3, complete genome	30625-30656	11	0.656

1. spacer 3.10|1910453|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_017180 (Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMOB01, complete sequence) position: , mismatch: 0, identity: 1.0

aattggcttattctctaataacgtttcgacat	CRISPR spacer
aattggcttattctctaataacgtttcgacat	Protospacer
********************************

2. spacer 2.8|1255508|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to MG945829 (UNVERIFIED: Microviridae sp. isolate 9263-1602, complete genome) position: , mismatch: 6, identity: 0.812

agttatatc-aataaatgaaccatccttttcat	CRISPR spacer
-attgaatcaaataaaacaaccatccttttcat	Protospacer
 .**. *** ******  ***************

3. spacer 2.9|1255568|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_027331 (Citrobacter phage Moon, complete genome) position: , mismatch: 6, identity: 0.812

aagaagatcataaagacgacgaagatgatagc	CRISPR spacer
atgaagatcatgaagacgatgaagatgacgac	Protospacer
* *********.*******.********...*

4. spacer 2.9|1255568|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to MG250484 (Citrobacter phage CF1 ERZ-2017, complete genome) position: , mismatch: 6, identity: 0.812

aagaagatcataaagacgacgaagatgatagc	CRISPR spacer
atgaagatcatgaagacgatgaagatgacgac	Protospacer
* *********.*******.********...*

5. spacer 2.15|1255930|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033968 (Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-attcgtcaagtagcgtgatgctatcatagacg	CRISPR spacer
cgttcttcaga-agcgtgatgctatcaaagacg	Protospacer
 .*** ***.. *************** *****

6. spacer 2.15|1255930|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037902 (Cupriavidus metallidurans strain BS1 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

-attcgtcaagtagcgtgatgctatcatagacg	CRISPR spacer
cgttcttcaga-agcgtgatgctatcaaagacg	Protospacer
 .*** ***.. *************** *****

7. spacer 2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 7, identity: 0.788

agcgaatagctgaaaatttatatttcaattcgt	CRISPR spacer
ctccaatagttgaaaatttatttttcaatttat	Protospacer
  * *****.*********** ********..*

8. spacer 2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 7, identity: 0.788

agcgaatagctgaaaatttatatttcaattcgt	CRISPR spacer
ctccaatagttgaaaatttatttttcaatttat	Protospacer
  * *****.*********** ********..*

9. spacer 2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 7, identity: 0.788

agcgaatagctgaaaatttatatttcaattcgt	CRISPR spacer
ctccaatagttgaaaatttatttttcaatttat	Protospacer
  * *****.*********** ********..*

10. spacer 2.9|1255568|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 7, identity: 0.781

aagaagatcataaagacgacgaagatgatagc	CRISPR spacer
acgaagatgatgaagacgacgaagatgacgaa	Protospacer
* ****** **.****************... 

11. spacer 2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045330 (Labrenzia sp. THAF191b plasmid pTHAF191b_b, complete sequence) position: , mismatch: 7, identity: 0.788

-tatctattgccgattcgttaccaattaaaaaac	CRISPR spacer
caatatgct-ccgattcgttaccaatttacaaac	Protospacer
  ** *..* ***************** * ****

12. spacer 2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045346 (Labrenzia sp. THAF187b plasmid pTHAF187b_b, complete sequence) position: , mismatch: 7, identity: 0.788

-tatctattgccgattcgttaccaattaaaaaac	CRISPR spacer
caatatgct-ccgattcgttaccaatttacaaac	Protospacer
  ** *..* ***************** * ****

13. spacer 2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045334 (Labrenzia sp. THAF191a plasmid pTHAF191a_a, complete sequence) position: , mismatch: 7, identity: 0.788

-tatctattgccgattcgttaccaattaaaaaac	CRISPR spacer
caatatgct-ccgattcgttaccaatttacaaac	Protospacer
  ** *..* ***************** * ****

14. spacer 2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045383 (Labrenzia sp. THAF35 plasmid pTHAF35_c, complete sequence) position: , mismatch: 7, identity: 0.788

-tatctattgccgattcgttaccaattaaaaaac	CRISPR spacer
caatatgct-ccgattcgttaccaatttacaaac	Protospacer
  ** *..* ***************** * ****

15. spacer 2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019632 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

-tatctattgccgattcgttaccaattaaaaaac	CRISPR spacer
caatatgct-ccgattcgttaccaatttacaaac	Protospacer
  ** *..* ***************** * ****

16. spacer 2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011928 (Labrenzia sp. CP4 plasmid pBCL1, complete sequence) position: , mismatch: 7, identity: 0.788

-tatctattgccgattcgttaccaattaaaaaac	CRISPR spacer
caatatgct-ccgattcgttaccaatttacaaac	Protospacer
  ** *..* ***************** * ****

17. spacer 2.13|1255809|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to AP013395 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18) position: , mismatch: 7, identity: 0.781

acatggat-ttttcagcagccaatagcatgtcc	CRISPR spacer
-tagggttattgtcaggagccaatagcatgtct	Protospacer
 .* ** * ** **** ***************.

18. spacer 1.4|126577|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaaaaacaaccgccacacttggtcatcatcc	CRISPR spacer
ggtgtaacagccgtcacacttggtcatcacct	Protospacer
*  . ****.***.***************.*.

19. spacer 1.9|126878|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 8, identity: 0.75

acttttccagtaaagccctgccgattgatctt	CRISPR spacer
tcttttccagcaaagccgtgccgacggcttat	Protospacer
 *********.****** ******. * *. *

20. spacer 3.18|1910943|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 8, identity: 0.75

tttgccattttgaagccttttgtttaattcct	CRISPR spacer
ataaaccttttgtagccttttgtctaattctt	Protospacer
 * . * ***** **********.******.*

21. spacer 3.18|1910943|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 8, identity: 0.75

tttgccattttgaagccttttgtttaattcct	CRISPR spacer
ataaaccttttgtagccttttgtctaattctt	Protospacer
 * . * ***** **********.******.*

22. spacer 3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY940428 (UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcaagcactaattcaccatctttgaaat	CRISPR spacer
ttcagcaatcaccaattcaccatctgaggata	Protospacer
 ******* ***.************  *.*  

23. spacer 3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047086 (Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcaagcactaattcaccatctttgaaat	CRISPR spacer
ttcagcaatcaccaattcaccatctgaggata	Protospacer
 ******* ***.************  *.*  

24. spacer 3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcaagcactaattcaccatctttgaaat	CRISPR spacer
ttcagcaatcaccaattcaccatctgaggata	Protospacer
 ******* ***.************  *.*  

25. spacer 3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcaagcactaattcaccatctttgaaat	CRISPR spacer
ttcagcaatcaccaattcaccatctgaggata	Protospacer
 ******* ***.************  *.*  

26. spacer 3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcaagcactaattcaccatctttgaaat	CRISPR spacer
ttcagcaatcaccaattcaccatctgaggata	Protospacer
 ******* ***.************  *.*  

27. spacer 3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033789 (Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcaagcactaattcaccatctttgaaat	CRISPR spacer
ttcagcaatcaccaattcaccatctgaggata	Protospacer
 ******* ***.************  *.*  

28. spacer 3.28|1911546|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_019149 (Staphylococcus aureus subsp. aureus plasmid pKKS49, complete sequence) position: , mismatch: 8, identity: 0.75

ataaatcaccaatagcatctaaaattaacctt---	CRISPR spacer
caaaatcaccaatagcatatagaatt---tttaaa	Protospacer
  **************** **.****   .**   

29. spacer 1.2|126456|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcgggaattgcacgatgaaggaaacgaaaaa	CRISPR spacer
caagggaattgcgcgatgcaggaaacgacccg	Protospacer
.  *********.***** *********   .

30. spacer 1.5|126637|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to MT451981 (Streptomyces phage Vondra, complete genome) position: , mismatch: 9, identity: 0.719

ctgatcgcgccgcccagtccgctaaccacgat	CRISPR spacer
aaggccgcgccgcccagtccgccgaccacctc	Protospacer
  *..*****************..*****  .

31. spacer 1.5|126637|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.719

ctgatcgcgccgcccagtccgctaaccacgat	CRISPR spacer
tcgatcgcgccgccaagtccgccaaggccgca	Protospacer
..************ *******.**   **  

32. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cata-gctgcaaattggcgcgatacgacgatttt	CRISPR spacer
-acactctgcaagtcggcgcgatacgacgaggcg	Protospacer
 *.*  ******.*.***************  . 

33. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 9, identity: 0.727

cata-gctgcaaattggcgcgatacgacgatttt	CRISPR spacer
-acactctgcaagtcggcgcgatacgacgaggcg	Protospacer
 *.*  ******.*.***************  . 

34. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cata-gctgcaaattggcgcgatacgacgatttt	CRISPR spacer
-acactctgcaagtcggcgcgatacgacgaggcg	Protospacer
 *.*  ******.*.***************  . 

35. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cata-gctgcaaattggcgcgatacgacgatttt	CRISPR spacer
-acactctgcaagtcggcgcgatacgacgaggcg	Protospacer
 *.*  ******.*.***************  . 

36. spacer 1.13|127119|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgctagcgccttatcgacgcgctcttgaatg	CRISPR spacer
ccttcagcgccttttccacgcgctcttgccgg	Protospacer
.* ..******** ** ***********   *

37. spacer 2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.727

agcgaatagctgaaaatttatatttcaattcgt	CRISPR spacer
tactaatagatgaaagtttatatttcaaatata	Protospacer
 .* ***** *****.************ *   

38. spacer 2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 9, identity: 0.727

agcgaatagctgaaaatttatatttcaattcgt	CRISPR spacer
tactaatagatgaaagtttatatttcaaatata	Protospacer
 .* ***** *****.************ *   

39. spacer 2.3|1255206|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.727

agcgaatagctgaaaatttatatttcaattcgt	CRISPR spacer
tactaatagatgaaagtttatatttcaaatata	Protospacer
 .* ***** *****.************ *   

40. spacer 2.6|1255388|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014254 (Listeria monocytogenes strain CFSAN023459 plasmid CFSAN023459_02, complete sequence) position: , mismatch: 9, identity: 0.719

tatgggtttatgatacttattgcctgttttat	CRISPR spacer
ccagttattatgacgcttattgcctgtttttt	Protospacer
.  *   ******..*************** *

41. spacer 2.8|1255508|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 9, identity: 0.719

agttatatcaataaatgaaccatccttttcat-------	CRISPR spacer
agttatattaataaatgaacaat-------atgagtatg	Protospacer
********.*********** **       **       

42. spacer 2.12|1255748|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 9, identity: 0.727

tatctattgccgattcgttaccaattaaaaaac	CRISPR spacer
tagtatgccccgattcgttaccaatttacaaac	Protospacer
** .   . ***************** * ****

43. spacer 3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to KY653120 (Staphylococcus phage IME1348_01, complete genome) position: , mismatch: 9, identity: 0.719

tagatgttagtgtcttttctgacgggtttgtt	CRISPR spacer
ttcttagtagtgtcttttcttacggttttgcc	Protospacer
*   *. ************* **** ****..

44. spacer 3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to JN192400 (Staphylococcus phage vB_SepiS-phiIPLA5, complete genome) position: , mismatch: 9, identity: 0.719

tagatgttagtgtcttttctgacgggtttgtt	CRISPR spacer
ttcttagtagtgtcttttcttacggttttgcc	Protospacer
*   *. ************* **** ****..

45. spacer 3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to KU598975 (Staphylococcus phage CNPx, complete genome) position: , mismatch: 9, identity: 0.719

tagatgttagtgtcttttctgacgggtttgtt	CRISPR spacer
ttcttagtagtgtcttttcttacggttttgcc	Protospacer
*   *. ************* **** ****..

46. spacer 3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to JN192401 (Staphylococcus phage vB_SepiS-phiIPLA7, complete genome) position: , mismatch: 9, identity: 0.719

tagatgttagtgtcttttctgacgggtttgtt	CRISPR spacer
ttcttagtagtgtcttttcttacggttttgcc	Protospacer
*   *. ************* **** ****..

47. spacer 3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_008723 (Staphylococcus phage PH15, complete genome) position: , mismatch: 9, identity: 0.719

tagatgttagtgtcttttctgacgggtttgtt	CRISPR spacer
ttcttagtagtgtcttttcttacggttttgcc	Protospacer
*   *. ************* **** ****..

48. spacer 3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to DQ831957 (Staphylococcus phage CNPH82, complete genome) position: , mismatch: 9, identity: 0.719

tagatgttagtgtcttttctgacgggtttgtt	CRISPR spacer
ttcttagtagtgtcttttcttacggttttgcc	Protospacer
*   *. ************* **** ****..

49. spacer 3.7|1910272|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_008242 (Chelativorans sp. BNC1 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

acccgaccgcaggaacatattggtcagatcgc	CRISPR spacer
gcggtgccgcaggaacatattgggccgatccg	Protospacer
.*   .***************** * ****  

50. spacer 3.17|1910882|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029091 (Pseudomonas aeruginosa strain AR441 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

agaattgatcttctcttcgctgttgccaccctt	CRISPR spacer
ggcggtgatcttgtcttcgctgtagccacggtg	Protospacer
.* . ******* ********** *****  * 

51. spacer 3.17|1910882|33|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027167 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

agaattgatcttctcttcgctgttgccaccctt	CRISPR spacer
ggcggtgatcttgtcttcgctgtagccacggtg	Protospacer
.* . ******* ********** *****  * 

52. spacer 3.18|1910943|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_049404 (Lactococcus phage 56003, complete genome) position: , mismatch: 9, identity: 0.719

tttgccattttgaagccttttgtttaattcct	CRISPR spacer
atctttatttctaagccttttgtttaattctc	Protospacer
 *. ..****. ******************..

53. spacer 3.24|1911305|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042531 (Klebsiella aerogenes strain C9 plasmid pC9_001, complete sequence) position: , mismatch: 9, identity: 0.719

ccatctggcgtaacattgcgcttatagccgtt	CRISPR spacer
gcggtgggcgtgtcattgcgcttatagccatg	Protospacer
 *. . *****. ****************.* 

54. spacer 3.25|1911365|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atcagcaagcactaattcaccatctttgaaat	CRISPR spacer
ttcagcaatcaccaattcaccatcagaggata	Protospacer
 ******* ***.***********   *.*  

55. spacer 3.27|1911486|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021919 (Sagittula sp. P11 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

agaacgcggatttcatcggcttttggggcgtg	CRISPR spacer
cgggctgggacttcatcggctattggggcggc	Protospacer
 *..*  ***.********** ********  

56. spacer 3.28|1911546|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to MN694663 (Marine virus AFVG_250M439, complete genome) position: , mismatch: 9, identity: 0.719

ataaatcaccaatagcatctaaaattaacctt	CRISPR spacer
ttgtatcaccatcagcatctaaaattaattca	Protospacer
 *. ******* .***************... 

57. spacer 1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to JN797796 (Bacillus phage B5S, complete genome) position: , mismatch: 10, identity: 0.697

gatggcagcacatatagctatatcacaagcaat	CRISPR spacer
tttaattttacatatagatacatcacaagcaat	Protospacer
  *...  .******** **.************

58. spacer 1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_018863 (Bacillus phage B4, complete genome) position: , mismatch: 10, identity: 0.697

gatggcagcacatatagctatatcacaagcaat	CRISPR spacer
tttaattttacatatagatacatcacaagcaat	Protospacer
  *...  .******** **.************

59. spacer 1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to MN153503 (Bacillus phage Chotacabras, complete genome) position: , mismatch: 10, identity: 0.697

gatggcagcacatatagctatatcacaagcaat	CRISPR spacer
tttaattatacatatagatacatcacaagcaat	Protospacer
  *... ..******** **.************

60. spacer 1.3|126516|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to KF669647 (Bacillus phage BigBertha, complete genome) position: , mismatch: 10, identity: 0.697

gatggcagcacatatagctatatcacaagcaat	CRISPR spacer
tttaattttacatatagatacatcacaagcaat	Protospacer
  *...  .******** **.************

61. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

62. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

63. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

64. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

65. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

66. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

67. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

68. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

69. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

70. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

71. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

72. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

73. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

74. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

75. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

76. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

77. spacer 1.6|126697|33|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 10, identity: 0.697

catagctgcaaattggcgcgatacgacgatttt	CRISPR spacer
acaacctgcaagtcggcgcgatacgacgaggcg	Protospacer
   * ******.*.***************  . 

78. spacer 1.11|126999|32|NC_013355|CRISPRCasFinder,CRT,PILER-CR matches to NC_009926 (Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence) position: , mismatch: 10, identity: 0.688

gtgtcaaaagagacatacccaaagtttcttac	CRISPR spacer
gaatcaaaagagatataccgaaagttgggcct	Protospacer
* .**********.***** ******   . .

79. spacer 3.2|1909971|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_041916 (Vibrio phage pTD1 DNA, complete genome) position: , mismatch: 10, identity: 0.688

cctatgatcaatggtgtcccgttatacagaca	CRISPR spacer
gtactgatcaatggcatcccgttatacgacaa	Protospacer
 .  **********..***********..  *

80. spacer 3.5|1910152|32|NC_013355|PILER-CR,CRISPRCasFinder,CRT matches to NC_041884 (Acinetobacter phage vB_AbaM_ME3, complete genome) position: , mismatch: 11, identity: 0.656

tagatgttagtgtcttttctgacgggtttgtt	CRISPR spacer
tagatgttagtgtctttcctaaccttccaaaa	Protospacer
*****************.**.**   .. .  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	151061 : 164292	9	Thermus_phage(12.5%)	NA	NA
DBSCAN-SWA_2	977674 : 988158	10	Sinorhizobium_phage(33.33%)	terminase	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_013355|151061:164292|DBSCAN-SWA
TATGACCTCATCTCGCTTCCCGTCTATGACCGAGGAAGATTACCGCGCCTCTTTACGGCTTATCCGAACACCCCGTATCGGGGCTGTAACCTATAACCGATTGATAACCCGATATTCTTCACCCCAAGAAGCGCTAAAAGCCGTGCCGCTTCTGGCTAAAAGGGGCGGCGGCCAAGCACCGAAAATCGCCTCGGAAAAAACGGTCAATGAAGAAATAGAGCAAGTCAAAATTTTAGGCGCGCGTTATATTTTTCGCCATACGCCTTATTATCCGCCGCTTCTCGATCAATTGGATAATGCCCCTCCGGTTCTCTTGGTGAAAGGGAATCCGCGTTTATTGCAAAAACCGGCGATTGCGATGGTCGGGGCAAGAAATGCTTCGGCCGCCGCCTGCCGTTTTGCCCATGATCTCGGACAAGAATTAGCGAATAAAGGCTATCCTGTTATCTCCGGTCTGGCACGCGGCATTGATACCGCCGCGCATCAAGGGGCGGGGATAGAGAAAACGATTGCGGTTATTGCGGGGGGTCTCGATAGCTTTTATCCACCCGAAAACAAAGAATTGCAGCAGGCTATTTCTGAAAAAGGCTTGGTCGTCAGTGAAATGCCGCCCAAAACCGAACCAAAAGCCCGCCATTTCCCAGCACGAAACCGGATTATCGCCGGAATTGCCCTTGGCGTTTTGGTGGTCGAAGCCTCTCCTAAATCCGGTTCACTTATTACCGCCAAATTGGCGACAGAAATCGGGCGGGAAGTCATGGCCATTCCGGGCTTTCCGATGGATGCGCGCAGCCAAGGCTGTAACCAGCTTATTAGGGAAGGTGCGACACTGATCCAAAATAGTGATCAGATTATCGAGGCAGTTTCTGTCATGGCCGCGCTTTTTGAAGAACCCACCGAAAAAAGCCCCCTCGAACCGCGTTTTTCCGGCTTGGAAAATGGCCAGATTGGCTATCGTTCTTCTCCGGCCATTGCCGAGGTTAAGGCAAAGGACCGCGAAATTATCCAAAGTCTGATTGGTTCAGCCTCTGTCGGGGTAAATGAACTTATCCGGCAATCAGGGCTAGAAAATGCGATAATCCAAACCATCTTATTGGAAATGGAGCTAGCTGGACGGCTTGAAAGTCATGCAGGCGGACGGGTAAGTCTGCTTTTTTGAATGATTTTTTGTTGCTTTCAACTCTGCCCCGCGAATACAGAATAGATCAACCCTTGTCTGTTTATCATTTTTTCAAAGGGATTTTCCCCTTTGATAACGAAAAAAAAGGCTCACTCTCCGCCGTAAATTGCGCGGAATGGTCAGGAGTATCATGAAACTCGTTGTTGTCGAATCACCGGCCAAGGCCAAAACTATCGAAAAATATCTTGGGTCGGGCTATCAGGTGCTGGCCTCTTATGGTCATATCCGCGATCTTCCCTCCAAGGATGGCTCTGTTAATCCCGACAACGGCTTTTCCATGGTCTGGCAAAATTATCCTGACAAAGCCCACCGCCTGAAAGCGATTGAAGACGCGGTAAAAGAGTCTGACAGCCTTATTCTCGCGACTGACCCTGACCGCGAAGGGGAAGCGATCAGCTGGCATATTCTCGAATTGTTAAAGACCAAAAAACTGTTACCCGATGATGTCGAAAGGGTGACCTTTAACGCTATTACCAAAGCGGCTGTTACCGATGCTATGGCGCATCCTCGCCAACTCGATAATGATTTAATCAATGCCTATCTGGCGCGTCGGGCTTTGGATTATCTCGTCGGTTTCACGCTCTCTCCGATTTTATGGCGAAAATTACCGGGCGCAAAATCAGCCGGACGGGTGCAATCAGTCGCCTTACGGCTGGTGGTTGACCGTGAGCAAGAAATAGAAGGCTTTAAACCGCAAGAATATTGGTCGGTAGAAGCCGATATGGAAGCCGACAGTATCGGCTTTACGTCGCGGCTTATCCAATGGCGCGGCCAAAAACTCGAAAAGCTGTCTATCGCAGATAAGACGCAGGCCGAGGCCGCTCAATCCGATGTTGAATCCGGTCATTTCACGGTTTCCAATGTCGAAACCAAACCGGTTTCTCGTAATCCGCAACCACCTTTCACAACTTCGACCTTGCAACAGGAAGCCGCCCGTAAATTGGGTTTTGCGGCCAGCCATACGATGCGCCTCGCTCAAAGCCTTTATGAAGAAGGGCTTATTACCTATATGCGGACGGACGGGGTTCAGATGGATGAAAGCGCGATTGCCGCGGCTCGAAAAACCATCACCCAACGCTATGACGGCGGCTATGTGCCGGACAAGCCGAGACAATATCAGGTCAAAGCTAAAAATGCCCAAGAAGCCCATGAGGCTATTCGCCCAACCGATTTTTCGCGCGACAAAGCGGCCAGCGGCGATCATGCCCGTCTTTATGAACTGATCTGGAAGCGCGCCCTTGCCAGCCAAATGGCCTCAGCCAAATTGGAACGGACAACGGTCGATTTAACCGATGGCACGGGGCAAAATGTCTTGCGGGTCACGGGGCAGGTCGTCTTATTCTCTGGCTTTCTGACGCTTTATGAAGAAAGCGCTGACGATAACGCCAATGACCGCGATGGCAAAGAAGGCCGCGCCCGTTTGCCTTTATTACGGGCAGGCGATGCACCTTTGAAAAAAGAAGTCAGGGCAGATCAACATTTCACCCAGCCGCCGCCCCGTTATTCGGAAGCGAGCTTGGTCAAAAAAATGGAAGATTTGGGCATCGGCCGCCCATCCACTTACGCTTCGGTTATTCAGGTTCTAAAAGACCGCGCCTATGTCACGCTGGAACGCAACCGCTTCATTCCCAGCGAAGCCGGACGTTTGCTGACGGCCTTTCTCGAACGTTTCTTTGAACGTTATGTCAGCTATGACTTTACCGCGGGCTTGGAAGACAGCCTTGACGAAATTTCCGGCGGTCGGGCTGACTGGCAAAAAGTCCTTGATGCTTTCTGGCATGACTTCAAACCCAAAACCGCCGAAGTCATGGAACAACAGCCCTCGGCTATCACCGCAGAATTGGATAAATTCCTTGAACCTTGGCTTTTCCCTGACAAGGGTGACGGCCATGATCCCCGTGAATGTCCCTCCTGCCATACGGGTCGTTTGGCGTTAAAAGGTGGCCGTTTCGGTGCCTTTATTGCCTGCTCGAATTATCCCGAATGTAAATATACCCGTGGCTTTGGGCAGGGTGAAGACGGCGTTGACGATAACGAACCCGTCCTGCTCGGTTATATGCCCGAAAATTCGGATGATGACGGCTATATAGCGTTTTCAGACCAAGGGGATATTTCACCCGCTAACAACGCTTCCGCCTCTGAAACAGGCGTTACTGACGGCGGTGTCGCGGCTAATACGGCCTTTTCTGGCAAGGGGAATAGCGCATCCCATACAGACAGGGATGATTTACCTTTTGATCCTGACGAACCCGCCTCTTCAACCGGAAATGTCGCCTCCTCACAATCCCGCATGACAGGTGACGAAACGGCGTCTTCTGGCAATAGCAGGGATTCCTCGGCTCATGGGGTTTCGACAACTGCCGGAATCGATGCTGAAAGCCAAGCCGGTATCAGCAATCAGGCGCTTGCCGGTAAAAATAACGCAGGTCGCATCACCGTCTCTGACGACAAGGGAAATAACAGCCGCGGCATAATCGCTACGGCGCGCAAAGGCGGTTCTACTGACGATAATGCTACGGTCTCCGATCCTGATGGGGATATTGGCAGCGGGGAATCTTCTTCCGGTCAGGATGCCGATAATAGGCTTCTATCTCATCGTAATGGAGACATTGATAGCCGCGCGATTCCTGCCGCTCACAAGGACAGTTCTAGCGATCAGAATGCCAGCCATGCGGCTCTATCCAATGCCGATAGCCATGCGCGCTCTCCTGACAGCAATTCTGACGATGCCTCTGTCTCTAACAGTGATAAAAAAATTGATAGCAAGGCCGTTTCTACCGGCCATGATGTCGGCAATGCCATAACGTCTGATAACAGCCCTTCAGATAATGTCGCCCATCTGGCTAGCACGCCTTCTTCTGCGACCTCCTCGGTAAAAGTTGCTCTGGAAACAGAAACCAATGATACGGCGGCTAGCAAAGCGGATGAACAAGCCAAAGAGGAAGAAGAATCCAGAAAGGCAAGGGCGGTTACACGCCGGACAGGCCGTTTCGGGCCTTATATCCAACTTGGTGAAGGCAAAAATGCTAAACGGGTTTCTGTCCCCCGCGATGTCAATCCAAGGGAGGTTGATTTCTCATTAGCCAGCCGCCTCTTGGCACTGCCTCGCGAAATTGGGCTACATCCCGAAAGCGGCAAAATGATTATTGCCGGAACCGGACGTTACGGTCCTTATCTGAATTGTGACGGCAAATATGCCCGCCTGTCTTCCACGGAAGAGCTGTTGGACATTGACATCGATCGGGCTGTTGTAAAACTGGCCGAAGCCGCCCAAAATAAGGGGCGCACCGGTGCGACATTATCCCGCGAACCTTTGAAGGTTTTTGGCGATAGCCCTGTTACCGAAAAGCCAGTTCAATTGATGAATGGCCGCTACGGGCCCTATGTCACCGATGGCGAAACCAATGCCTCTTTACCGAAAGACACAACCCCCGAAAGCCTAACTTTCGAAGAGGCCTTGGCGTTATTAGAAGCCCGCGCCAAAATGCCGAAAAAGAAGAAAACCAAAAAGGCAGCAGCCAAGAAACCGGCCGCCAAGAAGACCACCACAAAAAAAGCCGCCCCTAAAAAGGCGACAACAAAAACTACAACCCCAAAATCGGCCACTACCGACAACGCGACTTCAGAAGATGGCGATGCCACTCCTGCCAAGTCACCCGCCAAGAAAGCTGTCGCAAAAAAAACAACGGCCAATAAGCCTGCTTCAAAAAGCGCGACTAAAAAAGCTCCGGCCAGCAAAACGACCGCAGCGAAAAAGACTTCTAAAGCCGCCCCCAAAGACGAAGTGGCCGAATAAAAACAAAAACGGGATAGCCATGGCTATCCCGTTTCTACTTTACATCCTTAGCTTTTTTACACCCCAAGCTTCCTAGCCTCGCTTTCAGCCGCCCGACTATCTATTCCACTCAAGGCCGAGAGCGAATTCAATAACACCCTATCTTTACAGATCCTCTAATCTCAATCCGCAAAGCGATTATTAAAGGCGATCCAAAAACTCGCGTCGATAGTATCAAGATCACGAGCATCCGCATCCATTTCGAAAGACAGCCTTGCCACTCTCGAGAAAGCGCCTGCAAAGATAGACAGAGATTTCTATTTATCTATGTATTCCACGCTACCTTGGCTCGTGCGATGACTCTTCTTCCTTTAGTTATCGTCTTATCATACGCTTACGATCTAATTTATCCAATCAACCAAAAGCTATTCCGCGCTATGCTTGCAGCGACAATTCGGGTCTTTGCTCAAAGACACAGTTCTAAAACGAAAATCTTTGGCATCAATCAACAGTAATTTGTCGCCGCTCTCGGAACCAAATCCTGTAATTAAACGGATAGTCTCAATCGCAGCTAAACTTCCGATCGTTCCAGTCAATGCACCGAGAACACCTTGCGATGAACAAGTCATCTCCGGTTCACCCGGATCATCACCGACAAAACAGCGATAGCAAGGTTTACTTGCTTCATATCCTTTGAAAACAGCTAACTGCGCCTCAAAACGAATAACAGCAGCTGACACTAGAGGAATTTTCAACTCTGTTGCTACATCGCTGACAACCAAACGGGTTCCAAAATTATCACTGCCATCCACAATAATGTCAGCCTGACCAATCAGCTTCTTAGCATTCTCTGCATCCAGTTTCTGGTCATAAGGCAATACTTTAACATCAGGATTCAGACGTTGGACAACATTAGCAGCCATAGCTACTTTATGTGCTCCGATATCACGGGTCGCAAAAAGTGTTTGTCTCTGTAAATTCGAGAGAGAAACCTCGTCATTATCAACAATAGTAAGACGACCGACACCAGCAGCCGCCAAATATTGAATAACCGGAGAACCTATTCCTCCAGCACCAACAATTGCGACATGAGCTGATAAGAGTTTTTTTTGTCCCTTACCGCCGATTTCAGGTAAAACAATATGACGGGCATAACGATCTAGCTGATTATCAGTAAGTATCATATTCCGGTCGATCCAAATCCGTTATGGCCACGCTGGGTATCATCTAAATCAGTGACCTCACAAAATACAGCTTGCGTTACTGAAGCCAATATCAGCTGCGCAATACGATCACCTCTTTTAATTTCAAAAGCTTCGCTGCCCAAATTAATAAGAAGAATTTTAACTTCGCCACGATAATCAGAATCAATAGTTCCAGGAGCATTAGGGCAAGCTATACCATGCTTTAACGCTAACCCTGATCTAGCACGAACCTGAATTTCATATCCGTTAGGAATAGCTACAGCGAAACCAGTTTTAACCGGATAACGTTGCATAGGTTGCAACATTACGTCTTCTGCTGACACTACATCCATTCCAGCCGCGCCCTCACTAGCATAAGAAGGGAAGGGGAGGTTTGCGCCATGGGGTAGGCGTTTTATTTCAAGTTTTATTTTCATTAAATGATATCCCTTTATGCCAAGCAAAATTTTATTTTGATATAATTGATAATGGGTGCTCATTGGTAAGATTAAAGTAACCGGCTATTTTACTCGCTAACCGAGAGGCAACCTCTTTTTTGGACAAAAGAGGCCAATTTTCTATACCTGCATGGCTGGCAATGAAGATTTTATTATAGTCTCCACCCATTGCCGAGGGGGCATCTTCACTCTCAATAACAGGATTGGCTATTATCCAGTCACAACCTTTTTGTTGTAACTTTACTTTTGCATTTTCTAATAGATTTTCTGATTCTGCAGCGAAACCAACAACTAAAGAAGGACGGTCTATTTTCCTGTGAGATATATTCGATAAGATATCTGGATTTTCTATCGGTATAAGTTCAGGTTCTGATCTACCTTTTTTATATTTTGATGGAGAATAATTAAACCTCCAGTCAGCAACAGCAGCTGTAAAAATAGCACCATCTGCTGGGAGAGCATTTTCGACAGCTTTTTCCATTTCAATAGCCGTTTCAACATTCACGCGTTCTACCCTGTCTGGTGTGTTTTGATAAACAGGCCCCGTAACAAGTGTAACTTTTGCACCTAATTTTTGTAATGCTTCAGCGATCGCGAAACCCTGTTTTCCAGAAGAGCGATTGGCTAGGTAGCGGACAGGATCAATTGGTTCATGCGTTGGTCCTGCTGTCACAATAAAATGTCTATTTTTTAAAAATTGATAATTTTGTTCTTCTGCAAATAGAGACTCTGCAGATAAAAGAATGTCTTCTGGTGCTGCTAGTCGTCCAATTCCTGTTTCTCCACAAGCCATAGCCCCAGCTTCTGGATCAACAAAAGATATGCCATCAGATTTTAGTTGATGAATATTCCGTTGAGTTGCTGAGTGATGCCACATGCGATGATTCATTGCAGGCGCGACTAAGATTGGACTATCCGCTGCAAGAACTACAGTAGAAGCCAAGTCGTTAGCCAATCCATGAGCCATTTTTGAAATAAAGTCAGCTGATGCAGGTGCGACAATAATCATATCGGCTTCACGGGCTAGACGAATATGACGAATTGAAGCCTCTTCGCTTTCATCCCACATATCCTGCGCTACTGGATTGCCTGATAAACTAGCAAGAGCAAGTGGCGTTATAAAATTCGCTCCACCTTTTGTTATGAGACAGCGGATGTCAGCTTTTTTCTTCCTGAATAAGCGGATTATATCTGGGGCTTTGATAGCTGCAATACTACCAGAAATAACTAACAGGATTCGCTTTCCATTTAAAAAAGAAGACATAGATTATCTCGATTTGGAGGAGAGAATTAAAAAAAATGGTAATGGCCCAGAACTATCCCGATAATAAACGCGCTAAGGATAAAGACAGGCAAATAATGTTTTGTAGTAGCAGATTTAATCGAATTCTTATTCGCTACAGGATAGAGCTGTTCCTCTATGGTGAGAGGCGGATAATATTGATCTATCCGATCAATGAGTTCTGGTAACCGCTTAATGCTTTGAAGTGTTTTATAAAATTCTTCAGCTATTTTAGCTTCGGGTCCCAGCTCTGAGCGTAACCATTCTCTTACAAAAGGCTCCGCTGTATCCCATAAATTGATATCAGGATATAAAGAGGTAGCCACTCCTTCAACTACAACCATCGTTTTTTGCAAAAGTAAAAGATGTGGCTGGGTCTGCATCTCAAATTCACGGGTTATAGAAAATAACCCGTCCAGCATATGACTGATAGAAATATCGCGAACAGATAATCCTCTGATAGGTTCTCCAATAGTCCGCAAAGCAGTCGTGAATTCTGCTATGTCATGGTGAGATGGAACATAGCCTGCCTCGAAATGAATTTCCGCTATTCTGGAATAGTTACCTGTAATAAGGCCGTATAATATTTCAGCTAACCAGCGCCGTGCTTTTTTGTCGATCCGACCCATAATACCAAAATCAACAACAGCAAGAGATCCATCTTTTAATGCAAATAAATTTCCGTGATGGAGGTCAGCATGGAAAAAACCATCAGCTATAGCCTGCCTTAAGAAACTGCGAACAAGCCGAGTTGCCAAAGATTTTAGATCATATCCGGCCTCCTGCAATTTTTTATGATCTGAAAGCTTAATGCCATCAATCCATTGCATTACCATCATAGACTGGGATGTCCGATTCCAGTCTATTACAGGGACTTTAAAACCGGGAACTGCTTCCATATTTTCCGCTAACTCCGAGGCAGACGCAGCTTCTCTCCTTAAATCAAGCTCACGTATTGTCCATTGGCGGAAAGTTTTTACAACTAATTTAGGACGTAGGCGGATAAACTCATCATTTAATGATTCTATTTTCGCTGCAGCCCATTCATATGTTTCTGTAGCCTTTCGAAAAGCCTGCTTTATCCCTGGACGCAGTACTTTTACCGCGACTGTAACGCCATCAAGTGTTTCTGCCTGATACACTTGAGCAATAGATGCCGAACCAATAGGAATTTCGTTAAAAAAACGGAAGGATTTCTCAATAGGACATCCTAAGGCATTTTCGATAACTATACGAATATCTTTAAAAGGCAAAGGCGGTACAGAGTCTTGTAAACATGCCAATTGAGCGGCTGTTTCTTCTCCGATTAGATCTGGTCGTGTCGCTAAAGTCTGACCAAATTTGATTGCAGCTGGTCCTAAGGCGACAAAAGCGCCTGTATAATCGGGCGGGTTTGGAACTCGATAGCCGATCCTAAGTAATCTTATTATCAAACGAAGGGATAACGGAACAATTGTAGATTTCTCTACCGTTTTTAAAACGCCATGTTTCGATAATATTCGGCTCCAGCGGAATAAACGCCAAAGATGAACAACGGCTAATGTCATTAATTAGACTTTCCAACCGCTATGTATAGCCACTAAACCGCCTAAAATTGGCCTTGCTCGTATTTGGACAAAACCAGCTGATTTAATCATATCAGAAAATTTTTCTATGTTAGGGAATCTTTCGATAGATTCGATAAGATAGCGATAACTGTCCTCATCATTGGCTAATAGCTGACCAATTTTAGGTACGATATGTGTTGAATACATTTTATAAAGATTAGAAAACCCTGACCATTTCGTCTGGGAAAATTCCATGCAAAAGAAACGCCCCCCTACTTTTAAAACACGCCACGCTTCGTCTAGTGCTTTTTGTATATGTGTTACGTTTCTAATACCGAAAGCTATAGTGTAAGCGTCGAAAACATTATCATTAAATGATAATGCTTCAGCATTTTCTTCTTTCCATGTAAGATTTTCTATCGAGCGGGCTATAGCTCTCTTTTTTCCGACTTCAAGCATAGCTGGATTGATATCTGCAATCGTGACATTTGTACCGTATTTTGCCAATCGAAAGGCAATATCTCCAGTGCCGCCCGCCATATCTAGAATATGTTCACTGGCCTTCGGTTGAACCAGACGAACAAAATCATCTTTCCATAACCGATGGAGGCCACCTGACATAGCATCATTCATTAAATCATAGCGCGATGCTACACGACGAAAGACATCGCCAACAAGATGTGTTTTTTCCTGAGGCGAGACGTCTGAAAAACCGAAAGAAACTTTTTCCATATGAAAAAGTTTTAATGCTAATCAAAAGAACATTGAAGCGTAAAAAACTTTATGCTGCTGTTTTTTCTTATTTTGGGTGTTGAGAATGGAGCGGATGAAGGGAATCGAACCCTCGTCTTAAGCTTGGGAAGCTCCTGCTCTACCATTGAGCTACACCCGCTAGGATTATTTTGATCTTGAGATCAAAGGCTCTTTGCCACAACTAATATCTTTTGGTCAATGTTATGTTTACACAAAAACAGAATACTTGAATAATTTTGTCTATTAACCATTTCTGGATATATACGACAATTTAAACGGAAGATCCTGTTGCCAGAGCTACCAGAAGTTGAAACTACCGTTCGTGGACTATCTGAAGTCCTGATGGGTGAAAAAATTATAGATGTAAAAGTGCGCGGGGCATCTTTAAGACGGCCAATACCTTCTGATATTCAAGAAAGGCTAATAGGATCAACTATCATTTCTCTTAGTCGACGCGCAAAATATGGCATTATTGTCAATGATCGGGATGATGCTTTAATTTTCCATCTTGGGATGTCCGGTCGATGGAAAATAAATCCTGAAAATTTTGAGAAACACGACCACTTCGTTCTTCAAACAAAAAATAATTTTATAGTTTCACTTTATGATCCGCGTCGCTTTGGCTCTCTTGATTTAGTAAAAAAAAATCAATTGTTAGAATGGTCTTATTTTAGAAATCTCGGGCCAGAACCTTTAACTAGGAATTTTAATCCAGAATATTTACAGAAGAAGTTATTCTCTTCTTCTGCTCCCATAAAAAAAATATTATTAGATCAAAAAGTGGTTGCTGGCATTGGTAATATTTATGCTTGTGAGGCTTTGCACCAAGCCAAGATACATCCTCAACGGCCTAGCAAAAATTTAAATTTTGATGAAATAACTTCACTTGTTTTTTCTATCAAAAATATTTTGCAAAAGGCCATAGCTGAGGGAGGGTCAACTTTAAAAGACTATGCACGCCCTAATGGAGAGCTAGGTTATTTTTCGACTAAATTCAAAGTATACGGCAAAGAGGGTGAACAATGTGAATGTGGTCATACGATCGAACGTTATACGTTAGGTGGTCGTTCAACTTTTTTGTGTTCTTCATGTCAAAAATAACCATACAATATTTACATATTTTGTTTATTTATATTATTTGATGCAAGTAATTTATTAACTTCTTTTGCCTTATTATTTAACCGGACAGCATTATCGCCGGGCATTCCTGGAAATTTAGGCCACATCCCTTGCGCCATCGCATTCAAACTTTGAGAAGATGAAGATGCTTTGTGCTGATATATCCAATAATTACGCAATACAGTCGCAACATAAGCGCGGGTTTCTGCATATGGTATAGATTCAATAAAAAGCAGTGGGTCGCCATGATCACGGTCTTTCCAGCGGGGCAAGGCAGCTGGACCCGCGTTATAGGCTGCAATGACTTTGGGCAACAACCCGCCTGTGTAGCTCGTATCCCGTAGCCATTCGATATAGGCTTGACCATATTCAAAGCTGATAGTTGGTTTATCAAGATCTTCTATATCAATATTTGTAGCATGTTGTTTAGCGACCAAACGAGCTGTTGCAGGTGTAATTTGCATAACGCCTCGCGCACCTTTGTTGCTAACGGCTCGGCTACGGAACTGGGATTCTTGTAAGGCATGTGCATAAACAAGATAGGGATCTACATGCCAACCACTTGCCGGAGCCCAATTTGGAGAAGGATAACGTGCATCAACATCTGCAGAGAAACCTGCGGGACCATGATGGGCTAACCACAATTGTGCCTCTGGTAAACGAAGATAAGATGCTAAATGAATTAAATTGTTATGGTCTTTAGGGTCACCTAGTCGTGCTTGGTGTTTTAAAGTTTCACTGGCAAGCTGATATTCGCCAATTTGGTTCAACGCAATGGCTATTCTGATATTAGGCTGTGTTGTCAAACATTTCAGCTCGTCTTCAGATAAGGCGACAGGTCGAACAGAGGACTTAACAGTTTTTCCTAGGGCTTTTTCTGCCAAGAGACCATAAAAAGTTTCTGGCATGTGGCTAGCGGAACGTAATAAATTTTGAGTATATTCAGGGTGCCCTGATGCCATCGCGGCTCTGGCTTCCCAGAATAGACCTGCAGCCTTCATTTCTTTATTTTCGCTATAGGATGCAACACGAGAAAAAGCCTGCATAGCCGCTGAAAAATCTTCTTTTTGCCAATCGGCTAAGCCTTCAACCCAGCTTGCATCAGTTGTCCAGCGCCCAGTGCCATTTTCGGCCTGAACGGCTAAGCGGCGCGCGGCATCATCATTACCATTTAAATAGTAACTCCATGCAATACGTTGAGCCCATTCGGTTTTGATGTCATCAGATAAATTTTGTTGAGAATCTTGAAATAAATTTTCAGCCTGATCAGAAGCATCGGCTTTTATTAAAGGCAGTGCTTTGGTTTCAAAAACCATAGCTGAACGGTTTGTAGCATTGTGGTGATTAACAGGCCTTTGTGGCGCGCCTGATAAAAAGAATAAATTATTTTTTTCTGGCAGTGCTGGAAGTGTTTTTACACCGTGGTTGTAAGCAAGACGTGCCAAAGCCTCACCCTGAGGTAAGTAAGGTGACTTCTGAATTAAATTGATAATATCATCTGGGCTGACTTTAGATGAATTTTTTGCCAAATAAAGTTCAGCTGTTACAAAATCCGTTAGTAGGCCGTCTGGATTCGAAGATATCCATTGCTGTGCAGCTTGCCAACTGCCATGGCGTATGGCCGAAAGGCAAGCCTTATATCCCTGTATCTCTCGTGGAGATAAAACTTCTTTTACATTATCTATTGGTACCACACGGGACACAACAACTTGCGAAAAATCGGTTTCGCTATTTTCTAATGCAATATCATCATCAGAAAGAAAACCAGGTTCAATAACAGGATTTTTATTTGTTACTGTTGCTGCAAACGCGGAGGGCGTAGGAGGGAATAACAAAAAAGACATCGCCAAACTACAGGCTGTTTTAAAATACCGTTTCTTCTTATAAGAAAGAAGATTGATATTGCCTTTATTCGTCTGCGGTTGTCTTTTCAT

Protein sequences of DBSCAN-SWA_1

>NC_013355|151061:164292|161527_162340_+|WP_012816922.1|DBSCAN-SWA
MPELPEVETTVRGLSEVLMGEKIIDVKVRGASLRRPIPSDIQERLIGSTIISLSRRAKYGIIVNDRDDALIFHLGMSGRWKINPENFEKHDHFVLQTKNNFIVSLYDPRRFGSLDLVKKNQLLEWSYFRNLGPEPLTRNFNPEYLQKKLFSSSAPIKKILLDQKVVAGIGNIYACEALHQAKIHPQRPSKNLNFDEITSLVFSIKNILQKAIAEGGSTLKDYARPNGELGYFSTKFKVYGKEGEQCECGHTIERYTLGGRSTFLCSSCQK
>NC_013355|151061:164292|151061_152219_+|WP_012816916.1|DBSCAN-SWA
MTSSRFPSMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGGGQAPKIASEKTVNEEIEQVKILGARYIFRHTPYYPPLLDQLDNAPPVLLVKGNPRLLQKPAIAMVGARNASAAACRFAHDLGQELANKGYPVISGLARGIDTAAHQGAGIEKTIAVIAGGLDSFYPPENKELQQAISEKGLVVSEMPPKTEPKARHFPARNRIIAGIALGVLVVEASPKSGSLITAKLATEIGREVMAIPGFPMDARSQGCNQLIREGATLIQNSDQIIEAVSVMAALFEEPTEKSPLEPRFSGLENGQIGYRSSPAIAEVKAKDREIIQSLIGSASVGVNELIRQSGLENAIIQTILLEMELAGRLESHAGGRVSLLF
>NC_013355|151061:164292|156440_157199_-|WP_012816918.1|DBSCAN-SWA
MILTDNQLDRYARHIVLPEIGGKGQKKLLSAHVAIVGAGGIGSPVIQYLAAAGVGRLTIVDNDEVSLSNLQRQTLFATRDIGAHKVAMAANVVQRLNPDVKVLPYDQKLDAENAKKLIGQADIIVDGSDNFGTRLVVSDVATELKIPLVSAAVIRFEAQLAVFKGYEASKPCYRCFVGDDPGEPEMTCSSQGVLGALTGTIGSLAAIETIRLITGFGSESGDKLLLIDAKDFRFRTVSLSKDPNCRCKHSAE
>NC_013355|151061:164292|152370_156036_+|WP_012816917.1|DBSCAN-SWA
MKLVVVESPAKAKTIEKYLGSGYQVLASYGHIRDLPSKDGSVNPDNGFSMVWQNYPDKAHRLKAIEDAVKESDSLILATDPDREGEAISWHILELLKTKKLLPDDVERVTFNAITKAAVTDAMAHPRQLDNDLINAYLARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLVVDREQEIEGFKPQEYWSVEADMEADSIGFTSRLIQWRGQKLEKLSIADKTQAEAAQSDVESGHFTVSNVETKPVSRNPQPPFTTSTLQQEAARKLGFAASHTMRLAQSLYEEGLITYMRTDGVQMDESAIAAARKTITQRYDGGYVPDKPRQYQVKAKNAQEAHEAIRPTDFSRDKAASGDHARLYELIWKRALASQMASAKLERTTVDLTDGTGQNVLRVTGQVVLFSGFLTLYEESADDNANDRDGKEGRARLPLLRAGDAPLKKEVRADQHFTQPPPRYSEASLVKKMEDLGIGRPSTYASVIQVLKDRAYVTLERNRFIPSEAGRLLTAFLERFFERYVSYDFTAGLEDSLDEISGGRADWQKVLDAFWHDFKPKTAEVMEQQPSAITAELDKFLEPWLFPDKGDGHDPRECPSCHTGRLALKGGRFGAFIACSNYPECKYTRGFGQGEDGVDDNEPVLLGYMPENSDDDGYIAFSDQGDISPANNASASETGVTDGGVAANTAFSGKGNSASHTDRDDLPFDPDEPASSTGNVASSQSRMTGDETASSGNSRDSSAHGVSTTAGIDAESQAGISNQALAGKNNAGRITVSDDKGNNSRGIIATARKGGSTDDNATVSDPDGDIGSGESSSGQDADNRLLSHRNGDIDSRAIPAAHKDSSSDQNASHAALSNADSHARSPDSNSDDASVSNSDKKIDSKAVSTGHDVGNAITSDNSPSDNVAHLASTPSSATSSVKVALETETNDTAASKADEQAKEEEESRKARAVTRRTGRFGPYIQLGEGKNAKRVSVPRDVNPREVDFSLASRLLALPREIGLHPESGKMIIAGTGRYGPYLNCDGKYARLSSTEELLDIDIDRAVVKLAEAAQNKGRTGATLSREPLKVFGDSPVTEKPVQLMNGRYGPYVTDGETNASLPKDTTPESLTFEEALALLEARAKMPKKKKTKKAAAKKPAAKKTTTKKAAPKKATTKTTTPKSATTDNATSEDGDATPAKSPAKKAVAKKTTANKPASKSATKKAPASKTTAAKKTSKAAPKDEVAE
>NC_013355|151061:164292|157195_157636_-|WP_012816919.1|DBSCAN-SWA
MKIKLEIKRLPHGANLPFPSYASEGAAGMDVVSAEDVMLQPMQRYPVKTGFAVAIPNGYEIQVRARSGLALKHGIACPNAPGTIDSDYRGEVKILLINLGSEAFEIKRGDRIAQLILASVTQAVFCEVTDLDDTQRGHNGFGSTGI
>NC_013355|151061:164292|157667_158921_-|WP_012816920.1|DBSCAN-SWA
MSSFLNGKRILLVISGSIAAIKAPDIIRLFRKKKADIRCLITKGGANFITPLALASLSGNPVAQDMWDESEEASIRHIRLAREADMIIVAPASADFISKMAHGLANDLASTVVLAADSPILVAPAMNHRMWHHSATQRNIHQLKSDGISFVDPEAGAMACGETGIGRLAAPEDILLSAESLFAEEQNYQFLKNRHFIVTAGPTHEPIDPVRYLANRSSGKQGFAIAEALQKLGAKVTLVTGPVYQNTPDRVERVNVETAIEMEKAVENALPADGAIFTAAVADWRFNYSPSKYKKGRSEPELIPIENPDILSNISHRKIDRPSLVVGFAAESENLLENAKVKLQQKGCDWIIANPVIESEDAPSAMGGDYNKIFIASHAGIENWPLLSKKEVASRLASKIAGYFNLTNEHPLSIISK
>NC_013355|151061:164292|158947_160486_-|WP_012816921.1|DBSCAN-SWA
MTLAVVHLWRLFRWSRILSKHGVLKTVEKSTIVPLSLRLIIRLLRIGYRVPNPPDYTGAFVALGPAAIKFGQTLATRPDLIGEETAAQLACLQDSVPPLPFKDIRIVIENALGCPIEKSFRFFNEIPIGSASIAQVYQAETLDGVTVAVKVLRPGIKQAFRKATETYEWAAAKIESLNDEFIRLRPKLVVKTFRQWTIRELDLRREAASASELAENMEAVPGFKVPVIDWNRTSQSMMVMQWIDGIKLSDHKKLQEAGYDLKSLATRLVRSFLRQAIADGFFHADLHHGNLFALKDGSLAVVDFGIMGRIDKKARRWLAEILYGLITGNYSRIAEIHFEAGYVPSHHDIAEFTTALRTIGEPIRGLSVRDISISHMLDGLFSITREFEMQTQPHLLLLQKTMVVVEGVATSLYPDINLWDTAEPFVREWLRSELGPEAKIAEEFYKTLQSIKRLPELIDRIDQYYPPLTIEEQLYPVANKNSIKSATTKHYLPVFILSAFIIGIVLGHYHFF
>NC_013355|151061:164292|162351_164292_-|WP_012816923.1|DBSCAN-SWA
MKRQPQTNKGNINLLSYKKKRYFKTACSLAMSFLLFPPTPSAFAATVTNKNPVIEPGFLSDDDIALENSETDFSQVVVSRVVPIDNVKEVLSPREIQGYKACLSAIRHGSWQAAQQWISSNPDGLLTDFVTAELYLAKNSSKVSPDDIINLIQKSPYLPQGEALARLAYNHGVKTLPALPEKNNLFFLSGAPQRPVNHHNATNRSAMVFETKALPLIKADASDQAENLFQDSQQNLSDDIKTEWAQRIAWSYYLNGNDDAARRLAVQAENGTGRWTTDASWVEGLADWQKEDFSAAMQAFSRVASYSENKEMKAAGLFWEARAAMASGHPEYTQNLLRSASHMPETFYGLLAEKALGKTVKSSVRPVALSEDELKCLTTQPNIRIAIALNQIGEYQLASETLKHQARLGDPKDHNNLIHLASYLRLPEAQLWLAHHGPAGFSADVDARYPSPNWAPASGWHVDPYLVYAHALQESQFRSRAVSNKGARGVMQITPATARLVAKQHATNIDIEDLDKPTISFEYGQAYIEWLRDTSYTGGLLPKVIAAYNAGPAALPRWKDRDHGDPLLFIESIPYAETRAYVATVLRNYWIYQHKASSSSQSLNAMAQGMWPKFPGMPGDNAVRLNNKAKEVNKLLASNNINKQNM
>NC_013355|151061:164292|160489_161218_-|WP_011241011.1|DBSCAN-SWA
MEKVSFGFSDVSPQEKTHLVGDVFRRVASRYDLMNDAMSGGLHRLWKDDFVRLVQPKASEHILDMAGGTGDIAFRLAKYGTNVTIADINPAMLEVGKKRAIARSIENLTWKEENAEALSFNDNVFDAYTIAFGIRNVTHIQKALDEAWRVLKVGGRFFCMEFSQTKWSGFSNLYKMYSTHIVPKIGQLLANDEDSYRYLIESIERFPNIEKFSDMIKSAGFVQIRARPILGGLVAIHSGWKV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012816916.1|151061_152219_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	4.3e-29	37.1
WP_012816917.1|152370_156036_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	2.8e-98	37.1
WP_012816918.1|156440_157199_-	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	5.9e-11	27.3
WP_012816919.1|157195_157636_-	dUTP diphosphatase	A0A2L1IVN2	Streptomyces_phage	1.2e-32	51.7
WP_012816920.1|157667_158921_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.1e-43	31.5
WP_012816921.1|158947_160486_-	2-polyprenylphenol 6-hydroxylase	A0A167R6U4	Powai_lake_megavirus	8.0e-07	26.0
WP_011241011.1|160489_161218_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_012816922.1|161527_162340_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	7.9e-30	32.7
WP_012816923.1|162351_164292_-	lytic transglycosylase domain-containing protein	K4NWI2	Pseudomonas_phage	1.7e-09	28.6

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_013355|977674:988158|DBSCAN-SWA
CTCACATAATAAAGTGATTAACGCGCAAATAGCGATAATCAGGATGATTGAGTAAACGGCGAACGGCAGGCGCGTGATTTTTGTCCCAATATCGGACACCATATTTCACCAGCCATTCCATCAAAACGACGGTGGGAACATGGGCGGCGTGCCACATCGAAGAACGCCGATCAAAATCTTCATTTTGTGCCTGTTTATTGGCTTCCAAAGCCGCAGAACAATCCTGTTCATAGCGGATATGCCAACTGCCCTGATTCTCCTCTGAAGAGGAGAACCAACTTTTAAGCCCCGTCACCGGATTATAGGATAACAAGCGTTCAGCAGCCATCATGCCCTCGAATATCAAAGCCGCATTTCAAGCCCAGCCCGACCTTTTTTTTGAAAAAGGCGACCAAGGCAGAAGAAAAAGCCATGGAATATTCCCTTTCCGAATTTTTACGGGAAGATGTCTTGCAAGAAGACATCCTCCCGATCACGAAAATCAGGCAGCGCTTAAATCTGCCAAAACACCGGAGGCTGCTTCATTATGGCAGCGCAAGGCAATTTCAGTATAAAGGGCATCACGATCAGCCAGCCCCGTTGTTGCCAAAGACCGTTTCTGAATCGGATCTAAGGTCGCAACCGACCAATATTCAGGGTCAATGACCAAAGCGCTGCTATTGTCGCAAAAACGATCAGGAACAAACTGGACTTCGCCGACATCAGAAACATAGATATCGGCACCGGCAATAATACGCGCTTTCTGGTCGCCCGTATCGCGCCGGTTGGAAGCCAACCCCGGAAAGGCTGCCGCTGTCTGTTTCAGTTTCAAAGAGGTAATCACCATATTTGGCTGACCACCACTGACCCAGATATCGCCCAAAACTTCTTTTAACAAAGCCTCGGTATAAAGCCGCGCCTTACCTGCGGTCGCCGCTGTTGTCGGATAACCGCTGCCATTGTCGCCACCGGACATCACCGGATTGGCACCGCCGTCGCCACGATGGGCATTACTGCGCAGCCATGCCAAAGCTCCTGCTGTTTCACGCGCGACGACTGCCCCATCTCCGGGAATGGCTGCAAAATTACCGGTAAAGCGCGCCTCAATATCGCGTTTCAATTCCTGACCAGCACGTGCCAACTGATAGGCATGTTCATCACCGCGTCCAGCATTATGCACGGCTCGATCGGTCGTCGATGTCCCGACAACTTTGGTCATGATCTGGGTATAATTGCCGACCCGGACCGTTGGCTGACGGCTTTCATTGGCAAGATCAGCCCCTTCGACCTGTTTATTCTGGGCATTAGCGCTGGCAAGATTGTCGGTCTGCCATTCGGTATAGGTATTTTTGGCTGTCGTTTGACCGATAGCTGTTACAAAAGGTGTTTCCAGATTGTTACCGCAAAGGCTCTTTATCCCTTGCTTCCTTACATTCCTGCAAGGCTCAGACTATATCATCGCTTTCGCGGGCGGCACTCGTGTCAGCATTACTGCCATGGACAAAAAAGACTGAAATATTTCTTCCGAAATTTCCGGCATTTTCAGTAAAAATGCAAAGAATCATACCCGCTTCTTTTTCAGAAATAACGGCATCAGTTTTATCGTTTTTTGTCGGTAGGCTCGGCTGTTAGTCGTTACACCTTCAAGAGATTTTCACCTCAAGCTTGGCTCGGGATTATCCTCGTCTATGACGGTTGGACGTCCCCCGAATTCACCGCCTTTTCATTTAATGCAGCGTATAAACTACATTAACGGACCAAGACTCCAGTCGGGCTGATATTATAAATAATATCGGAAAGATCTTCACGAATACCGACACGCGAATAGGTTTGGACGGTATTAGAGGCAACAGACATAATTCAAAATTCCTTGAAAAGTAGATTATTTAAAAAGGGCGTTCATCGCCGCGGCGGCTGACCGGACATCGCCAGTTTCGCGAAGCTGCCCCAATGATTCATTCAGTTTCCGGCTTTTGGCCGCGCCATAAGGTTGGGACGTTCCTGGAACTGCGGTTTTTCTTGATGTTTTGGCCGATTTGATAGCCGCCGCCTTACCCTGTTGTAGGGCATCCCATTTTTCGGATTTTCTTCGCCATTCATGGGCTTTTTTCAAAGCCATAATGTCGTTGGAATCAGCCTCGGCCAAAACATGATCTGGATAACCGAGATGCCGCCCCGTTTCTTCAAAAGCCGCCAAGATAGCCGGCCTCTGATTATCATCGCCCCATTCAGGCAAAAGCGATATCAAACGCTGATGTTCGCCCTGCGCCCATGCCCTTCTGGCGGCCAGTTCAGCCATTTCATTCTGGCGAGAAATCTGGATAACTTCCTGAACAATTTGGTCACGCTTGGCCGTTAAGTCTTCATAACTTGCCAATTGTGCGGCATAGCTTGCCGGATCACTGACCAATAACTGCGGATCAGGTTTTTTCGGGGTAATCGCTTCGGCATATTTAGCAAGCTGGTCGGCATAATGGTAATGCAAGGCTCGACAATGTTCTTGCCAAGCCGCACTCATGTCTGGCTGACCATTTCCTTGATTGGCACCATTTCCTGCTGCCGTTGCCCCCATATTGCTCTGATCCTCGGATGCCTGATCGGATGGCGGCATATCCGCATTATTTCCAGCCATCGGATCATCCTGATCCGGTGCCAAATTGGCTTGCAATGCTTCGGCAGCTTCCTGAATAGACCGACGAGGTCGCCTCAAGGCTGCGCCTTTTATATTTGTCATTATCAATATTCCTGAATGTCCAACCGGTAAAATGGGCGCAGAAGATCACTCCGGTGACTCTCTTTTCAGCCACCCAGCCGGTTTTATCTCGATAAATAGAATGAAGACCTTGATAGCTCGGCCTACAGCCAGCGACGTTTTCGCTCGGGTAAATTCTCTATTTTTCGGGCATGTTCTTTGGCCTGATCAGCCAATTGCCCATCTGCAATAATCACTTGAATCAAGTTATCAATTTGCCCCACAATTCGATTAGCCATCGCCAAACGTAATAATTTTCGGTCAGCTTCGGCTTCCCATGGGGCAATCTCGGACATACGCTGGATATAACGGGTGCCGATTTCTTGCAAAATAGCTTTCAACCCGCCCTTTTCTTCATAAAAGGCTTTCCAACGCCTTGCCCGCAAAATGGGATCTTGCTCCATTATTTATCCAATGCGCCCCCTGCTTTGTTTTGCGGCACCCTATCCCCCTTTTTATCCGCTGGAATATTTTTTCCAGCTTCTGCCAATTTCAAAGCGATCTGGTAATTACGATCGGCCGTTTCCTTGGCAAGCGAGGCTTCAAAATCGGAACGTTGCCTTGCTAAAATGGCCTCTTCTTCGGCTTTTTCGCGCACCAAAGCCAAACGCTGTTTATGCTCTTCCTGTTGCATCGCCAGCTTGGCTTCGGTTTCCTGCTTTTTCAAAGCAAATTCGGCCATACTCCGTTCCTGATCAGCAGCCATTTTCTGCCCTTGAAGATTGATATCTTGTCGGGCTTTCAACTCTGTATAATCGGGATTATTTCCTACACTGCCAGAAGAATTTTGCGCCGCCGCCGAATTATTATTCACAGGATTTTCAGCCTGATTACCTGCCAAGCGAATATCAGGATCAATCAAATAATCAGTCGGATTACCCAAACCACAATCTCGGATCATTGCGGCGATATTATTATAAATCTGCTTGGAACCGGTTAAACCAACGGCCAACGCCTGTTGCTGAATAGATAACAACTGCTGACGATAGGCCAAACGCTGATCTTTTCGCCCCGATCCCAATCCGACCGTGACACGCACGCGCATATCCGGCGGCCACAAAGCCGGATCAACCGTTTTATACAGACCTTCAACCTTGATCGCCATCGGATCGCCCGATGCAATCATCAGCCATAATTTCTTTTGGAATAACCGCCCAAGACTTTGTGCAAAATTGCGGGCAACATATTCTTCCATTTGCTGCCCTTGCGCCTGAAGCAAGGCCTGACCGGTCGCGGTTTTATTAAGACTGTCAGCATCCAATCCCTGATTAAGACGGGTAATCCCCGTCCGGCTTTCCTGAGCCGACTGCATATATTCGATCATACCCAAAGATTTTTGGATATCGAAACCGGCATTTAACGGCGTTGGTGGAATGCCCCCCCGATAACGGACAATCGCCCCGGGTCTGATTGTCAATAAATCGTCAAAAGTATCTTCGGTTAAACCATCGACATTTACCGCCATACGGGGCGCATTGGTCTGGTAAACCCCATCCAAAGCCTGACGCATCAGCACTGACTTAACCCGCTGGATATCCATAACCTTCTCGGCCAAAGAATTACCAATCATCCGATGGGCGCGCGGGAAAGGTGTCCAAACGACAAAGGGCGCTTCGTCTACTTCTTCAATCGAAAGTAAGACATCTTTTACCCGAAAAATCTGCAATAATTCAGCAATGCCATCGCCATCCCGATCGATGCGGACATATTCTTCATATAAGAGAACTTCGCGATTGGCTTGATCGCTACTGCCGGACAGAAAGGATTCATCCCGCCATCTGGCATCAGAACGGCCATCGCTATTGGGAAAACTCTTATCACTTGGCAGGCTCTCGACAATATCGCGATCGAACCCCATCGAAATAAGATCAGACAGCGTTTTATAACTGACATGCGCCTGATAATCAGCATCATCTTCATGGCGGGTTCTGGCCGAAACCCGATATTCTTCGGACGGAATCGGCATATCGACATAGCGTTTTTGAAGCTGATAACGGGTAACGGTTACCTCATATTGGCCGCTACCATCGTCATTATTCAAGGTAATCTGAATATCGGGATTATCCTCGGCCTCCATCAACAAAGCCGCCAAGGCATCATCATCGACAGTAATATGACGGATTGTAGCACGTCTTTCCGATAGGACCGCGGTTTTGATAATGCCTATTTTTTCAATCAATCCCGACTGTATCCAGTCATGCAAGATTTTATAGCCGTCCTGTCCATGCATAAAAGCATAGCTGACAGCCTCGGTCGCATCGTCGGCATCTTGCGCTTGCTCGGCGGCTATCGGCTCAAATTCAATCACGCGATCGCCTGACACAATCGTCCGTAACAGGCTGATCGTCATATAATCGACTACCTCGGCGACATCGGGACTAACGACCTGACTCCGACCGTCCTCTTCATCCCCAAAGGGTCGCGCTTCATAAAAATCGATAGCATTAGCCTGATCTTCAGCCAGTAAACTATTATGCCAGCTTTCTGCTTGATCGGCTTTTTCTCGCAAGACCGCTAATAACTCATGGTTAGAAAGCAAGAAATTCGCCTGTTTTTCTTTCAAATCTATATTGCTATCAATATCCAAAGACATAGCGCCCCCTTCGGGGCAGAAAGCTCTTTTCAGCCCGTTTCATTAAAATATTCCTTTATTGCTATAGGTGATTTTCCGGCTCGTTACGGGCGGTTCCCAAGCAATAGCTGCCAAACCGAAAGCATCTGCGGAATGGCTTGACCAATCATGATCGGGTCCTAACCCTATCCCTCGTATTTCGTCCCGTTTTTCGTGATACCATCCAAGGGCTTCCAAACCGCCACGGCAGTGATTTTCATCAAACCACATCTGGGGAAATAACCGACGAGCTGCTTCAATCCGCTGCATTGCGGCTCCGGCTCCCTGATTAGGAATAACCCGCACCGAAAATCCGGCTTCACGCAACGCGCCTTCATAGGTTGTCGAGGCGATTTTATCATGCTGCGCGCCATCATGAGGTAGGATACATAAAGCCCCGCCATAATCATGCGAACGCAACCAATGAAGATGAGCAGATAAAGGCTGCCCTTGCGCTTCATAATGATCGAGGAAACGGATTTCCCGTCCGACATATTGGACAATCCATATCGCGGTAGCATCGGCTTTGGCACCCGTGCCGCCGATATCCCAAACCGCCCGCAAAGTCATTAACGGGTCAGCGGCAACGACAGCTATCCGTTTTTCAGATCGGGCTTTGGCCAAGGCTTGGGCATAATAAGCCCCCTCGGTTATCTCCGCATATCCCCCTTCCCATATATGGCGGTATTTATCAGGATCATTCGCCAGGCAATCCCGCCTTTCCTGATCCAACGGCGAGGGAAACCACGGGTTATTTTCCCAATTAGCTTGAACCACAACAGCACCGGTCGGAGGCGTTTCGCCGCGCAACATCCGGTCAACCGGATCAGTTTTGAAACGAGGATTCCACGAAAACCATAATTCTGAATCAATCGTTCTGATGGTTGGCCTTAAAAGCTCCAAAGATCGTTGGGACAGGGTCTGCGCTTCTTCGACCCATGCTCGTGAAAAACCTTCCAAAGACTTGATACTTTCGGCAGTATGGTCTTGCATCCCTTGAAAGATGATAACGCCATTGCCGGGGGTTTGGATGTGGTCACGAAAAACCCGAAAACCGACATTGCTTCCCAAATGATATGCCGATAATTTCGCCTCGATCAGCCTTTTCGCTGAATCCTTCAGGGATTTTTGAACTTCTCGAATACAGACAGCCCGCAATCCCGGCAGGCGAAGACAATCTTCAACCAACATTTCCGCGAAAAAATGGGATTTACCGGAACCTCTTCCACCATAAGCGCCTTTATAGCGTGCCGGTTTTAATAAAGGTCTAAAGACTTTGGCGGTCGGAATTCTTAAAGCCGGAAAAGACATCACATCTTTTCCATATCAACAGGATCGTTATCCCATTCCGAAGAGGATATAGGCCGATCAGATCCGCTATGCCCTTCGCCGACAATGACGCGTTCTATACGCGCCAAAATAGGCGCACCATTCTGGCCGGTTATTTCTGCCGTTTGTTTTTCCCGCCATTGTTTAGGACGGCGGTTCCGTAACCAAAAACTACAGGCTGTAATATCGGGCGGAAGATGCTCGACAAATTCCACGACTTCAGGCTTACCGGCAACCATCAGCACTTTTTGGCAATCGTAACTATAGCCTACGGCTCTTTGATAGAGCGAAGCCTCAACCCGATTGTCCGCCGCCGCTTTCCCAATTTTAACAGCATTGGCAAAATCGGGATATTTCAAAACCCAACGATTGATCGTGCGTTCGCTCACACCAAAAAAATCGGCAATATCGCGATTGGTTGCCCCTAATTTGGCAAGGTTGCGCGCCTGTATGATATATTCAATTTTAAAAGTAGAAGAAGCAGTCATGCAAATTCTATTAAAACAGAATTTACAACAACAAAGAGTGGGCAGAAATAAAGAGATTAGAAAAAATTGAAGTTAAAATAAAATCAGCAGAAATTTTTATTTCGATATTGATGCCATAAAAACAAAGCCATTATACTTCTATAAGGACGGAATATAGCCCCAAGCCCACGGGTTTCTTTCATATCAGGCCGATGGGATAATTGATAAAGATATCCGGTGGCAATTCTTATCCCTAAATCAGCCGCAGGCCAAATATCCAAACGCCCTTCGGCAAAGATCAGATAATTTTCAGCCGTCCAACGACCAATCCCATGCACGGACATCAAAAGATCGACCGCATCATCATCTCCTTCGGGCAAAGCGAACAAATCCAACCCCGAGACAGAGCGCATCGCCAAATCTTTCAAATAAGCAATCTTAGACGGTGACAATCCACATTGCCGCAAAATCGCCTCGTCAACAGACAAAAGACGATCAGCCGTAATATCTCCGATAGAACAGACTAGTTTTTGCCATATCCCATCCGCGACTTTGGTATGAAGCTGTTGCCCGACAATCACCCGAGCCAGGCTGGGAACGCCTCTTTCGACGGCTTGATAAAGTGGATAACCAAATTGATGCAGCCCTTGTTGTATCAAGTGATTTCCGGCGGCCCATTGATCCAGATTCTGTTTAATATTTTGTTGGCACAAAGATTGTTTCATCTTATCCAATCACGATATTTCTATCATCAGTAGAAATTTTTATTGTTACTCATGCACAAAGTTTTATTCTATGTTATTTTAAATTCTTTTCCCAAATAAGTTATTTTCCTGATAGACCCCCGTGATTGAACCCAGAAAGATCGACACCATATCTATGAAAAGGTGTGAGCATTTTGCCGCCCCAGTGGAGTTGTGATGAAAGAAACCCTTCCCGTTTTACCGCTGCGCGACATCGTCGTATTTCCTCATATGATCGCGCCGCTTTTTGTCGGTCGTGAAAAATCGGTAGCAGCGCTTGAAAGCGTGATGGCAGCAGAGAAGACTATTTTTCTCGTTTCCCAACGCGACCCGGCTGAAGAAGACCCTAATCGTGAAGCGCTTTATGACATTGGCGTGGTCGCGAATGTGTTACAACTTCTTAAATTACCCGACGGCACCGTGCGGGTGTTGGTAGAAGGCCGGAAACGCGCCAAAATAAGCGACATGGACGATTCCAGTGGCCATCTCATCGCCGAAGTAGAACCCCTTGAGGATACCTCCGTCGAAAATGACGAGGTCGAGGCTCTGATGCGCTCGGTCAAGGATCAGTTCGAACATTACGCTAAACTCAATCGCAAATTACCGGGCGATATCGCCCATGAAATCAAAGAGATTGATGCCCCATCTCGACTGGCTGATGCGATCGCTGTTAATTTGGCTGTCAAAGTAGCCGACAAACAGCCGCTTCTTGAAGAGCTGAATCCCTTTAAAAGACTGGAAATGACGTTTGGCCTGATGGAAGGCGAACTTGGCGTTTTACAGGTTGAACGCAAGATCAGAAGCCGTGTCAAACGCCAGATGGAAAAGAACCAGCGGGAATATTACCTCAATGAACAGCTCAAAGCTATTCAGAGAGAACTTTCCACAGGCGAAAGCAGCGGGAATGGGGAAGAAGAAGAGGACGGCGACGAACTCTCTGAATTCACGCAAAAGCTGAATAACCCGAAACTTCCGAAAGAGGTGAAGGCCAAGGCCACTTCGGAATTAAAAAAATTGCGGACGATGGGCGCTATGTCTGCCGAAGCAACGGTGGTGCGTTCTTATCTTGAAACCTTGTTGAGTATGCCATGGGGCAAGAAAACACGGGTTAAAAAGGATATCATCGCCGCTGAAAAAATTCTTGGTGAAGAACATTTCGGCCTTGATAAGGTTAAAGAACGAATTGTCGAATATATCGCGGTTCAGGCTCGTACGAACAAGTTGAAAGGGCCTATCCTTTGCCTCGTTGGGCCTCCGGGTGTGGGTAAAACCTCCTTGGCACGCTCTATCGCCAAGGCCACGGGTCGTAACTTTGTCAGACAATCGCTCGGCGGCGTTCGTGATGAGGCCGAAATACGCGGCCATCGTCGGACTTATATTGGCTCGCTTCCGGGTAAAATCGTCACCAATATCAAAAAAGCAGAAAGCTTTAATCCGCTCTTTCTGCTCGATGAAATTGACAAATTGGGACAGGATTCCCGTGGTGATCCGGCATCCGCCTTGCTTGAGGTTTTAGACCCCGAACAGAATAATAAATTTCAGGATCATTATCTTGAAACCGATATTGATCTTTCGGATGTCATGTTTGTGGCAACGGCCAATTCTTTGAATTTGCCCGCCCCTCTAATCGACCGCATGGAAATCATCCGTCTTGAAGGTTATACCGAAGACGAAAAAATCGAGATTGCGACCAGCCATCTTTTACCGCGCCAAATCAAATCCCATGGTTTAAAAAAAGGCGAATTTACGGTTGAGACAGACGCTATCCGTGATCTTATCCGCTATTATACCCGTGAATCGGGTGTTCGTGCGCTGGAACGTGAACTGGCTAAAATTGCCCGTAAAGCCTTGCGGCGTATTCTTGAAAAGAAAGCCAAAACGATCACGGTCACGGCTAAAAATCTGAGCGATTTTTCGGGCGTCCGGCGGTATAAATTTGGTATTTCCGAAAAAGAAGATCAGGTCGGTGTCGTCACGGGTCTGGCATGGACAGAGGTCGGCGGAGAATTGCTGACGATCGAAAGCGTCACTGTTCCGGGTAGAGGCAATATCCGCACGACGGGTAAACTTGGCGATGTGATGAAGGAGTCCATTCAAGCGGCGTTGTCCTTCGTCAAATCACGCGCACCCCTCTATGGCATTAAACCCAGTATCTTTACTCGGAAAGATGTCCATATCCATTTGCCGGAAGGTGCTGTTCCAAAAGATGGGCCTTCAGCGGGTATCGGTATTGTGACAGCGATTACGTCGGTTTTGACTGGTGTCCCAGTGCGCCGCGATGTCGCTATGACCGGCGAAGTCACCTTAAGAGGTCGCGTCCTGCCGATCGGTGGATTAAAAGAGAAACTTCTGGCAGCCCTAAGAGGCGGGATCAAAACGGTGTTAATTCCGGAAGAAAATCAGAAAGACCTGATTGAATTACCGGAAAATATTAAGAAGGGTCTCAAGATTATTCCGGTATCGCATGTTGATGAGGTTCTGGCACTCGCTTTGACTGAAAAGCTTGATCCTATCGACTGGAGCGAAGCCGATGATCTGGCCGCTTTCCCGCCGACAGCTTTGAACCATCATGCATCAGATGGTGTCAGCCCTGTGCATCATTGA

Protein sequences of DBSCAN-SWA_2

>NC_013355|977674:988158|977674_978001_-|WP_012817347.1|DBSCAN-SWA
MAAERLLSYNPVTGLKSWFSSSEENQGSWHIRYEQDCSAALEANKQAQNEDFDRRSSMWHAAHVPTVVLMEWLVKYGVRYWDKNHAPAVRRLLNHPDYRYLRVNHFIM
>NC_013355|977674:988158|979401_979509_-|WP_011240303.1|DBSCAN-SWA
MSVASNTVQTYSRVGIREDLSDIIYNISPTGVLVR
>NC_013355|977674:988158|984915_985536_-|WP_012817352.1|DBSCAN-SWA
MKQSLCQQNIKQNLDQWAAGNHLIQQGLHQFGYPLYQAVERGVPSLARVIVGQQLHTKVADGIWQKLVCSIGDITADRLLSVDEAILRQCGLSPSKIAYLKDLAMRSVSGLDLFALPEGDDDAVDLLMSVHGIGRWTAENYLIFAEGRLDIWPAADLGIRIATGYLYQLSHRPDMKETRGLGAIFRPYRSIMALFLWHQYRNKNFC
>NC_013355|977674:988158|980508_980808_-|WP_011240301.1|DBSCAN-SWA
MEQDPILRARRWKAFYEEKGGLKAILQEIGTRYIQRMSEIAPWEAEADRKLLRLAMANRIVGQIDNLIQVIIADGQLADQAKEHARKIENLPERKRRWL
>NC_013355|977674:988158|979534_980386_-|WP_012817348.1|DBSCAN-SWA
MTNIKGAALRRPRRSIQEAAEALQANLAPDQDDPMAGNNADMPPSDQASEDQSNMGATAAGNGANQGNGQPDMSAAWQEHCRALHYHYADQLAKYAEAITPKKPDPQLLVSDPASYAAQLASYEDLTAKRDQIVQEVIQISRQNEMAELAARRAWAQGEHQRLISLLPEWGDDNQRPAILAAFEETGRHLGYPDHVLAEADSNDIMALKKAHEWRRKSEKWDALQQGKAAAIKSAKTSRKTAVPGTSQPYGAAKSRKLNESLGQLRETGDVRSAAAAMNALFK
>NC_013355|977674:988158|985731_988158_+|WP_012817353.1|DBSCAN-SWA
MKETLPVLPLRDIVVFPHMIAPLFVGREKSVAALESVMAAEKTIFLVSQRDPAEEDPNREALYDIGVVANVLQLLKLPDGTVRVLVEGRKRAKISDMDDSSGHLIAEVEPLEDTSVENDEVEALMRSVKDQFEHYAKLNRKLPGDIAHEIKEIDAPSRLADAIAVNLAVKVADKQPLLEELNPFKRLEMTFGLMEGELGVLQVERKIRSRVKRQMEKNQREYYLNEQLKAIQRELSTGESSGNGEEEEDGDELSEFTQKLNNPKLPKEVKAKATSELKKLRTMGAMSAEATVVRSYLETLLSMPWGKKTRVKKDIIAAEKILGEEHFGLDKVKERIVEYIAVQARTNKLKGPILCLVGPPGVGKTSLARSIAKATGRNFVRQSLGGVRDEAEIRGHRRTYIGSLPGKIVTNIKKAESFNPLFLLDEIDKLGQDSRGDPASALLEVLDPEQNNKFQDHYLETDIDLSDVMFVATANSLNLPAPLIDRMEIIRLEGYTEDEKIEIATSHLLPRQIKSHGLKKGEFTVETDAIRDLIRYYTRESGVRALERELAKIARKALRRILEKKAKTITVTAKNLSDFSGVRRYKFGISEKEDQVGVVTGLAWTEVGGELLTIESVTVPGRGNIRTTGKLGDVMKESIQAALSFVKSRAPLYGIKPSIFTRKDVHIHLPEGAVPKDGPSAGIGIVTAITSVLTGVPVRRDVAMTGEVTLRGRVLPIGGLKEKLLAALRGGIKTVLIPEENQKDLIELPENIKKGLKIIPVSHVDEVLALALTEKLDPIDWSEADDLAAFPPTALNHHASDGVSPVHH
>NC_013355|977674:988158|983039_984326_-|WP_012817350.1|terminase|DBSCAN-SWA
MSFPALRIPTAKVFRPLLKPARYKGAYGGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDSAKRLIEAKLSAYHLGSNVGFRVFRDHIQTPGNGVIIFQGMQDHTAESIKSLEGFSRAWVEEAQTLSQRSLELLRPTIRTIDSELWFSWNPRFKTDPVDRMLRGETPPTGAVVVQANWENNPWFPSPLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAVVAADPLMTLRAVWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQGQPLSAHLHWLRSHDYGGALCILPHDGAQHDKIASTTYEGALREAGFSVRVIPNQGAGAAMQRIEAARRLFPQMWFDENHCRGGLEALGWYHEKRDEIRGIGLGPDHDWSSHSADAFGLAAIAWEPPVTSRKITYSNKGIF
>NC_013355|977674:988158|984325_984832_-|WP_012817351.1|DBSCAN-SWA
MTASSTFKIEYIIQARNLAKLGATNRDIADFFGVSERTINRWVLKYPDFANAVKIGKAAADNRVEASLYQRAVGYSYDCQKVLMVAGKPEVVEFVEHLPPDITACSFWLRNRRPKQWREKQTAEITGQNGAPILARIERVIVGEGHSGSDRPISSSEWDNDPVDMEKM
>NC_013355|977674:988158|978154_979069_-|WP_023593380.1|DBSCAN-SWA
MKSLCGNNLETPFVTAIGQTTAKNTYTEWQTDNLASANAQNKQVEGADLANESRQPTVRVGNYTQIMTKVVGTSTTDRAVHNAGRGDEHAYQLARAGQELKRDIEARFTGNFAAIPGDGAVVARETAGALAWLRSNAHRGDGGANPVMSGGDNGSGYPTTAATAGKARLYTEALLKEVLGDIWVSGGQPNMVITSLKLKQTAAAFPGLASNRRDTGDQKARIIAGADIYVSDVGEVQFVPDRFCDNSSALVIDPEYWSVATLDPIQKRSLATTGLADRDALYTEIALRCHNEAASGVLADLSAA
>NC_013355|977674:988158|980807_982997_-|WP_012817349.1|DBSCAN-SWA
MSLDIDSNIDLKEKQANFLLSNHELLAVLREKADQAESWHNSLLAEDQANAIDFYEARPFGDEEDGRSQVVSPDVAEVVDYMTISLLRTIVSGDRVIEFEPIAAEQAQDADDATEAVSYAFMHGQDGYKILHDWIQSGLIEKIGIIKTAVLSERRATIRHITVDDDALAALLMEAEDNPDIQITLNNDDGSGQYEVTVTRYQLQKRYVDMPIPSEEYRVSARTRHEDDADYQAHVSYKTLSDLISMGFDRDIVESLPSDKSFPNSDGRSDARWRDESFLSGSSDQANREVLLYEEYVRIDRDGDGIAELLQIFRVKDVLLSIEEVDEAPFVVWTPFPRAHRMIGNSLAEKVMDIQRVKSVLMRQALDGVYQTNAPRMAVNVDGLTEDTFDDLLTIRPGAIVRYRGGIPPTPLNAGFDIQKSLGMIEYMQSAQESRTGITRLNQGLDADSLNKTATGQALLQAQGQQMEEYVARNFAQSLGRLFQKKLWLMIASGDPMAIKVEGLYKTVDPALWPPDMRVRVTVGLGSGRKDQRLAYRQQLLSIQQQALAVGLTGSKQIYNNIAAMIRDCGLGNPTDYLIDPDIRLAGNQAENPVNNNSAAAQNSSGSVGNNPDYTELKARQDINLQGQKMAADQERSMAEFALKKQETEAKLAMQQEEHKQRLALVREKAEEEAILARQRSDFEASLAKETADRNYQIALKLAEAGKNIPADKKGDRVPQNKAGGALDK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012817347.1|977674_978001_-	hypothetical protein	A0A218MLW6	uncultured_virus	5.1e-12	41.9
WP_023593380.1|978154_979069_-	DUF5309 domain-containing protein	A0A1Y0T0F4	Sinorhizobium_phage	7.7e-66	48.5
WP_011240303.1|979401_979509_-	hypothetical protein	NA	NA	NA	NA
WP_012817348.1|979534_980386_-	hypothetical protein	NA	NA	NA	NA
WP_011240301.1|980508_980808_-	hypothetical protein	NA	NA	NA	NA
WP_012817349.1|980807_982997_-	hypothetical protein	A0A1B1IQR4	uncultured_Mediterranean_phage	4.4e-75	32.5
WP_012817350.1|983039_984326_-|terminase	PBSX family phage terminase large subunit	F8TUR5	EBPR_podovirus	5.4e-174	69.9
WP_012817351.1|984325_984832_-	helix-turn-helix domain-containing protein	Q8W6H9	Sinorhizobium_phage	1.8e-27	53.3
WP_012817352.1|984915_985536_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_012817353.1|985731_988158_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.5e-204	47.9

2. NC_013357

CRISPR-Cas detection and classification

Crispr_ID: NC_013357_1

• CRISPR_ID: NC_013357_1
• CRISPR_location: 33670-36950
• CRISPR_type: TypeI
• Repeat_type: I-C
• Spacer_info: 49 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NC_013357_1

Consensus_repeat	Method
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	PILER-CR
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CRT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	PILER-CR

spacers of NC_013357_1

>1.1|33702|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
AATGCTAGCTTCGTAAAAGCAAAGATTGGCGGGC
>1.2|33768|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
CCAGTCAAATGTATCGGCCAGTCGCCTAACGCCAC
>1.3|33835|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
AAAACTCCGCCTTTGGTGATATCTGAAACATCAT
>1.4|33901|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ATTGAAATATCCATTGCCACCAAAGGAAACAAGCG
>1.5|33968|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT
CATACAGACTGAATACCGCAGTAAATTACTGAC
>1.6|34033|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
CAATTCTATGGCAATACCCCTCTTCTGGGCGACT
>1.7|34099|32|NC_013357|PILER-CR,CRISPRCasFinder,CRT
GCTAGAAAGGCCGGCTTTCTTAGCAATGCTAC
>1.8|34163|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ACCAAAGACTCTGAAGCTGTGAATATTTTACTTA
>1.9|34229|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ATTGACTGTATGCACAAAGCAATGGTTTTCGCGC
>1.10|34295|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TAATAAGTTCAAGCAGTCTATCGGCCAATTCATG
>1.11|34361|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
GATTATACGGGCTTTCCAGAGATTGGTGTTATAG
>1.12|34427|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT
AGCATATCTTTGCCGGACATACTCTTGGCAACAAGC
>1.13|34495|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TGAATGGATGTGGTCTAATCCTGATGCAAACAG
>1.14|34560|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ACTTCGATACGACGAATGTCTTGTGTTGGAAGCGGC
>1.15|34628|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TACATGTCGTGAAAACTGTCTCGGCGGGTCAGGTG
>1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ACCGGTCAGAACATAATCGACGTTGGCCTCGTGG
>1.17|34761|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCCG
>1.18|34828|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TTATTTCATCAGAAGACGACTCACCATTAACTGC
>1.19|34894|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
AAATCAACGTTAGACCCTGTTGGCGAGAGCATTGC
>1.20|34961|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
CATCCATCCATCCCAAAGACCGTTGAATACTGTG
>1.21|35027|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TTCCAAGACCGTTCCTGTCATTGTAATTTCGCATAA
>1.22|35095|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TTATCAGATTGTTGTCGATCACAATCGTGTCTGC
>1.23|35161|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ATAGAGACGATAAAGTTTCTATTTGCAAAAAAGG
>1.24|35227|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ATCATAATTCGGTTCGGCTTTCGAGCCATCTTTG
>1.25|35293|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT
GGACTTTGAATACGCGATCTTGCCAAGAGAAGA
>1.26|35358|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
AGACTTTGAATACGCGATCTTGCCGAGAGAAGAAC
>1.27|35425|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ACCCAAGGTAATGCTATCATGCAGATAATTCTTT
>1.28|35491|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
CAACTATAGCCTGCGTGATTTTCCTACGTTCTTG
>1.29|35557|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
AACGTCTTTACCGATTTCCCCCCATGTATGAACAA
>1.30|35624|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ATCTCCCCGAAATGACTGTTGAGTAGAATATTA
>1.31|35689|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT
ACCAGCGAATTACGCCACAAAAACCCTGATTTGTGC
>1.32|35757|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TTTAATGACGGACTGCATTTTACGCATACGTGCAT
>1.33|35824|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT
GAGAAATTCTTCCGCGCCTTGACTTTCGAACTTG
>1.34|35890|37|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCAA
>1.35|35959|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
TGAATCTTATCAGTTGCATTATTCGCGAGGCCAGC
>1.36|36026|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
CCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCGC
>1.37|36093|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
GGTTTTAATGAACCATGCAAAAGTTGCTTTGAAAT
>1.38|36160|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT
CTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGAC
>1.39|36227|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT
GCTCTATCTGTCCGCAGGCAACAGGCGGGTTTT
>1.40|36292|36|NC_013357|CRISPRCasFinder,CRT
ACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCAT
>1.41|36360|35|NC_013357|CRISPRCasFinder,CRT
AAAACAAACTTGACGAATCACTTCGGGGTTATCAT
>1.42|36427|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR
CATTATTCACAAGAGCGCGAAGTTTGCCGGATT
>1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR
GGATCTCTGGAAACAATTATGTCAGGTGCGGCTG
>1.44|36558|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR
GTCCCCAAGGCAGAGAAATCATCGACAGGCATCG
>1.45|36624|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR
GGTAAAGAAGGCGCGGCTTCGATCGCGACAATGG
>1.46|36690|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR
AATGCTTTGAAGCTGCTCAATGAGTGGCTGCAT
>1.47|36755|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR
CGGCAACGTCAGGGTATGATTACCGAGCCTTTA
>1.48|36820|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR
TAACAAAGTGTATCGAGCACACCGAGGCAATAA
>1.49|36885|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR
TTGATCGTACCCGTTGCATCTCGCTCGCGAGCAA

CRISPR arrays and Neighbor proteins around NC_013357_1

CRISPR arrays

The CRISPR arrays of NC_013357_1

>merge|NC_013357|1|33670-36950|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAATGCTAGCTTCGTAAAAGCAAAGATTGGCGGGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCCAGTCAAATGTATCGGCCAGTCGCCTAACGCCACGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAAAACTCCGCCTTTGGTGATATCTGAAACATCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACATTGAAATATCCATTGCCACCAAAGGAAACAAGCGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCATACAGACTGAATACCGCAGTAAATTACTGACGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCAATTCTATGGCAATACCCCTCTTCTGGGCGACTGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGCTAGAAAGGCCGGCTTTCTTAGCAATGCTACGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCAAAGACTCTGAAGCTGTGAATATTTTACTTAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACATTGACTGTATGCACAAAGCAATGGTTTTCGCGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTAATAAGTTCAAGCAGTCTATCGGCCAATTCATGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGATTATACGGGCTTTCCAGAGATTGGTGTTATAGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAGCATATCTTTGCCGGACATACTCTTGGCAACAAGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTGAATGGATGTGGTCTAATCCTGATGCAAACAGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACTTCGATACGACGAATGTCTTGTGTTGGAAGCGGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTACATGTCGTGAAAACTGTCTCGGCGGGTCAGGTGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCGGTCAGAACATAATCGACGTTGGCCTCGTGGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCCGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTTATTTCATCAGAAGACGACTCACCATTAACTGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAAATCAACGTTAGACCCTGTTGGCGAGAGCATTGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCATCCATCCATCCCAAAGACCGTTGAATACTGTGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTTCCAAGACCGTTCCTGTCATTGTAATTTCGCATAAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTTATCAGATTGTTGTCGATCACAATCGTGTCTGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACATAGAGACGATAAAGTTTCTATTTGCAAAAAAGGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACATCATAATTCGGTTCGGCTTTCGAGCCATCTTTGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGGACTTTGAATACGCGATCTTGCCAAGAGAAGAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAGACTTTGAATACGCGATCTTGCCGAGAGAAGAACGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCCAAGGTAATGCTATCATGCAGATAATTCTTTGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCAACTATAGCCTGCGTGATTTTCCTACGTTCTTGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAACGTCTTTACCGATTTCCCCCCATGTATGAACAAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACATCTCCCCGAAATGACTGTTGAGTAGAATATTAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCAGCGAATTACGCCACAAAAACCCTGATTTGTGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTTTAATGACGGACTGCATTTTACGCATACGTGCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGAGAAATTCTTCCGCGCCTTGACTTTCGAACTTGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCAAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTGAATCTTATCAGTTGCATTATTCGCGAGGCCAGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCGCGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGGTTTTAATGAACCATGCAAAAGTTGCTTTGAAATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGACGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGCTCTATCTGTCCGCAGGCAACAGGCGGGTTTTGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAAAACAAACTTGACGAATCACTTCGGGGTTATCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCATTATTCACAAGAGCGCGAAGTTTGCCGGATTGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGGATCTCTGGAAACAATTATGTCAGGTGCGGCTGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGTCCCCAAGGCAGAGAAATCATCGACAGGCATCGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACGGTAAAGAAGGCGCGGCTTCGATCGCGACAATGGGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAATGCTTTGAAGCTGCTCAATGAGTGGCTGCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACCGGCAACGTCAGGGTATGATTACCGAGCCTTTAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTAACAAAGTGTATCGAGCACACCGAGGCAATAAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACTTGATCGTACCCGTTGCATCTCGCTCGCGAGCAAGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC

>NC_013357|1|1|33670-36291|PILER-CR
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AATGCTAGCTTCGTAAAAGCAAAGATTGGCGGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCAGTCAAATGTATCGGCCAGTCGCCTAACGCCAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAAACTCCGCCTTTGGTGATATCTGAAACATCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGAAATATCCATTGCCACCAAAGGAAACAAGCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATACAGACTGAATACCGCAGTAAATTACTGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAATTCTATGGCAATACCCCTCTTCTGGGCGACT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTAGAAAGGCCGGCTTTCTTAGCAATGCTAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAAGACTCTGAAGCTGTGAATATTTTACTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGACTGTATGCACAAAGCAATGGTTTTCGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAATAAGTTCAAGCAGTCTATCGGCCAATTCATG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GATTATACGGGCTTTCCAGAGATTGGTGTTATAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGCATATCTTTGCCGGACATACTCTTGGCAACAAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATGGATGTGGTCTAATCCTGATGCAAACAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACTTCGATACGACGAATGTCTTGTGTTGGAAGCGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TACATGTCGTGAAAACTGTCTCGGCGGGTCAGGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCGGTCAGAACATAATCGACGTTGGCCTCGTGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATTTCATCAGAAGACGACTCACCATTAACTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAATCAACGTTAGACCCTGTTGGCGAGAGCATTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATCCATCCATCCCAAAGACCGTTGAATACTGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTCCAAGACCGTTCCTGTCATTGTAATTTCGCATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATCAGATTGTTGTCGATCACAATCGTGTCTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATAGAGACGATAAAGTTTCTATTTGCAAAAAAGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCATAATTCGGTTCGGCTTTCGAGCCATCTTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGACTTTGAATACGCGATCTTGCCAAGAGAAGA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGACTTTGAATACGCGATCTTGCCGAGAGAAGAAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCCAAGGTAATGCTATCATGCAGATAATTCTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAACTATAGCCTGCGTGATTTTCCTACGTTCTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AACGTCTTTACCGATTTCCCCCCATGTATGAACAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCTCCCCGAAATGACTGTTGAGTAGAATATTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAGCGAATTACGCCACAAAAACCCTGATTTGTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTTAATGACGGACTGCATTTTACGCATACGTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GAGAAATTCTTCCGCGCCTTGACTTTCGAACTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATCTTATCAGTTGCATTATTCGCGAGGCCAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTTTTAATGAACCATGCAAAAGTTGCTTTGAAAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTCTATCTGTCCGCAGGCAACAGGCGGGTTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAAAACAAACTTGACGAATCACTTCGGGGTTATCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATTATTCACAAGAGCGCGAAGTTTGCCGGATT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGATCTCTGGAAACAATTATGTCAGGTGCGGCTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GTCCCCAAGGCAGAGAAATCATCGACAGGCATCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTAAAGAAGGCGCGGCTTCGATCGCGACAATGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AATGCTTTGAAGCTGCTCAATGAGTGGCTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CGGCAACGTCAGGGTATGATTACCGAGCCTTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAACAAAGTGTATCGAGCACACCGAGGCAATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTGATCGTACCCGTTGCATCTCGCTCGCGAGCAA


>NC_013357|1|1|33670-36950|CRISPRCasFinder
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AATGCTAGCTTCGTAAAAGCAAAGATTGGCGGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCAGTCAAATGTATCGGCCAGTCGCCTAACGCCAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAAACTCCGCCTTTGGTGATATCTGAAACATCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGAAATATCCATTGCCACCAAAGGAAACAAGCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATACAGACTGAATACCGCAGTAAATTACTGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAATTCTATGGCAATACCCCTCTTCTGGGCGACT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTAGAAAGGCCGGCTTTCTTAGCAATGCTAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAAGACTCTGAAGCTGTGAATATTTTACTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGACTGTATGCACAAAGCAATGGTTTTCGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAATAAGTTCAAGCAGTCTATCGGCCAATTCATG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GATTATACGGGCTTTCCAGAGATTGGTGTTATAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGCATATCTTTGCCGGACATACTCTTGGCAACAAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATGGATGTGGTCTAATCCTGATGCAAACAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACTTCGATACGACGAATGTCTTGTGTTGGAAGCGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TACATGTCGTGAAAACTGTCTCGGCGGGTCAGGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCGGTCAGAACATAATCGACGTTGGCCTCGTGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATTTCATCAGAAGACGACTCACCATTAACTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAATCAACGTTAGACCCTGTTGGCGAGAGCATTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATCCATCCATCCCAAAGACCGTTGAATACTGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTCCAAGACCGTTCCTGTCATTGTAATTTCGCATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATCAGATTGTTGTCGATCACAATCGTGTCTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATAGAGACGATAAAGTTTCTATTTGCAAAAAAGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCATAATTCGGTTCGGCTTTCGAGCCATCTTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGACTTTGAATACGCGATCTTGCCAAGAGAAGA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGACTTTGAATACGCGATCTTGCCGAGAGAAGAAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCCAAGGTAATGCTATCATGCAGATAATTCTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAACTATAGCCTGCGTGATTTTCCTACGTTCTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AACGTCTTTACCGATTTCCCCCCATGTATGAACAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCTCCCCGAAATGACTGTTGAGTAGAATATTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAGCGAATTACGCCACAAAAACCCTGATTTGTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTTAATGACGGACTGCATTTTACGCATACGTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GAGAAATTCTTCCGCGCCTTGACTTTCGAACTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATCTTATCAGTTGCATTATTCGCGAGGCCAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTTTTAATGAACCATGCAAAAGTTGCTTTGAAAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTCTATCTGTCCGCAGGCAACAGGCGGGTTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAAACAAACTTGACGAATCACTTCGGGGTTATCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATTATTCACAAGAGCGCGAAGTTTGCCGGATT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGATCTCTGGAAACAATTATGTCAGGTGCGGCTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GTCCCCAAGGCAGAGAAATCATCGACAGGCATCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTAAAGAAGGCGCGGCTTCGATCGCGACAATGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AATGCTTTGAAGCTGCTCAATGAGTGGCTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CGGCAACGTCAGGGTATGATTACCGAGCCTTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAACAAAGTGTATCGAGCACACCGAGGCAATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTGATCGTACCCGTTGCATCTCGCTCGCGAGCAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC

>NC_013357|1|1|33670-36950|CRT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AATGCTAGCTTCGTAAAAGCAAAGATTGGCGGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCAGTCAAATGTATCGGCCAGTCGCCTAACGCCAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAAACTCCGCCTTTGGTGATATCTGAAACATCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGAAATATCCATTGCCACCAAAGGAAACAAGCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATACAGACTGAATACCGCAGTAAATTACTGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAATTCTATGGCAATACCCCTCTTCTGGGCGACT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTAGAAAGGCCGGCTTTCTTAGCAATGCTAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAAGACTCTGAAGCTGTGAATATTTTACTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGACTGTATGCACAAAGCAATGGTTTTCGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAATAAGTTCAAGCAGTCTATCGGCCAATTCATG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GATTATACGGGCTTTCCAGAGATTGGTGTTATAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGCATATCTTTGCCGGACATACTCTTGGCAACAAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATGGATGTGGTCTAATCCTGATGCAAACAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACTTCGATACGACGAATGTCTTGTGTTGGAAGCGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TACATGTCGTGAAAACTGTCTCGGCGGGTCAGGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCGGTCAGAACATAATCGACGTTGGCCTCGTGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATTTCATCAGAAGACGACTCACCATTAACTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAATCAACGTTAGACCCTGTTGGCGAGAGCATTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATCCATCCATCCCAAAGACCGTTGAATACTGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTCCAAGACCGTTCCTGTCATTGTAATTTCGCATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATCAGATTGTTGTCGATCACAATCGTGTCTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATAGAGACGATAAAGTTTCTATTTGCAAAAAAGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCATAATTCGGTTCGGCTTTCGAGCCATCTTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGACTTTGAATACGCGATCTTGCCAAGAGAAGA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGACTTTGAATACGCGATCTTGCCGAGAGAAGAAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCCAAGGTAATGCTATCATGCAGATAATTCTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAACTATAGCCTGCGTGATTTTCCTACGTTCTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AACGTCTTTACCGATTTCCCCCCATGTATGAACAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCTCCCCGAAATGACTGTTGAGTAGAATATTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAGCGAATTACGCCACAAAAACCCTGATTTGTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTTAATGACGGACTGCATTTTACGCATACGTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GAGAAATTCTTCCGCGCCTTGACTTTCGAACTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATCTTATCAGTTGCATTATTCGCGAGGCCAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTTTTAATGAACCATGCAAAAGTTGCTTTGAAAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTCTATCTGTCCGCAGGCAACAGGCGGGTTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAAACAAACTTGACGAATCACTTCGGGGTTATCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATTATTCACAAGAGCGCGAAGTTTGCCGGATT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGATCTCTGGAAACAATTATGTCAGGTGCGGCTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GTCCCCAAGGCAGAGAAATCATCGACAGGCATCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTAAAGAAGGCGCGGCTTCGATCGCGACAATGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AATGCTTTGAAGCTGCTCAATGAGTGGCTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CGGCAACGTCAGGGTATGATTACCGAGCCTTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAACAAAGTGTATCGAGCACACCGAGGCAATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTGATCGTACCCGTTGCATCTCGCTCGCGAGCAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC

>NC_013357|1|2|36395-36950|PILER-CR
	AATGCTAGCTTCGTAAAAGCAAAGATTGGCGGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCAGTCAAATGTATCGGCCAGTCGCCTAACGCCAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAAACTCCGCCTTTGGTGATATCTGAAACATCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGAAATATCCATTGCCACCAAAGGAAACAAGCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATACAGACTGAATACCGCAGTAAATTACTGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAATTCTATGGCAATACCCCTCTTCTGGGCGACT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTAGAAAGGCCGGCTTTCTTAGCAATGCTAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAAGACTCTGAAGCTGTGAATATTTTACTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATTGACTGTATGCACAAAGCAATGGTTTTCGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAATAAGTTCAAGCAGTCTATCGGCCAATTCATG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GATTATACGGGCTTTCCAGAGATTGGTGTTATAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGCATATCTTTGCCGGACATACTCTTGGCAACAAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATGGATGTGGTCTAATCCTGATGCAAACAG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACTTCGATACGACGAATGTCTTGTGTTGGAAGCGGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TACATGTCGTGAAAACTGTCTCGGCGGGTCAGGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCGGTCAGAACATAATCGACGTTGGCCTCGTGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAAGTTCCTTGTACCGGTTAGCGCAGGTCTCCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATTTCATCAGAAGACGACTCACCATTAACTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AAATCAACGTTAGACCCTGTTGGCGAGAGCATTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATCCATCCATCCCAAAGACCGTTGAATACTGTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTCCAAGACCGTTCCTGTCATTGTAATTTCGCATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTATCAGATTGTTGTCGATCACAATCGTGTCTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATAGAGACGATAAAGTTTCTATTTGCAAAAAAGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCATAATTCGGTTCGGCTTTCGAGCCATCTTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGACTTTGAATACGCGATCTTGCCAAGAGAAGA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AGACTTTGAATACGCGATCTTGCCGAGAGAAGAAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCCAAGGTAATGCTATCATGCAGATAATTCTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CAACTATAGCCTGCGTGATTTTCCTACGTTCTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AACGTCTTTACCGATTTCCCCCCATGTATGAACAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ATCTCCCCGAAATGACTGTTGAGTAGAATATTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	ACCAGCGAATTACGCCACAAAAACCCTGATTTGTGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTTAATGACGGACTGCATTTTACGCATACGTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GAGAAATTCTTCCGCGCCTTGACTTTCGAACTTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGCCACTGCTGGCCGGTTGAAATTATGGCCAAATCAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TGAATCTTATCAGTTGCATTATTCGCGAGGCCAGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CCCCATGGTGGCCGTCGCGGGGACGCGCTGAGCGC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTTTTAATGAACCATGCAAAAGTTGCTTTGAAAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CTTCCCAAGCTGTCTAAAACGTTTGTTTTTTGGAC
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GCTCTATCTGTCCGCAGGCAACAGGCGGGTTTT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAACACCGAGCATATAGCTTATTTTGTCGAAGTCGCTCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAACAAAACAAACTTGACGAATCACTTCGGGGTTATCATGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CATTATTCACAAGAGCGCGAAGTTTGCCGGATT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGATCTCTGGAAACAATTATGTCAGGTGCGGCTG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GTCCCCAAGGCAGAGAAATCATCGACAGGCATCG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	GGTAAAGAAGGCGCGGCTTCGATCGCGACAATGG
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	AATGCTTTGAAGCTGCTCAATGAGTGGCTGCAT
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	CGGCAACGTCAGGGTATGATTACCGAGCCTTTA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TAACAAAGTGTATCGAGCACACCGAGGCAATAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC	TTGATCGTACCCGTTGCATCTCGCTCGCGAGCAA
GTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_013357.1|WP_012817724.1|39478_40663_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|367570
NC_013357.1|WP_012817720.1|31455_32127_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|273040
NC_013357.1|WP_012817717.1|28079_28748_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187534
NC_013357.1|WP_012817722.1|33167_33458_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_013357.1|WP_012817721.1|32123_33158_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NC_013357.1|WP_012817715.1|24193_24502_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|224937
NC_013357.1|WP_012817712.1|22620_23070_+|hypothetical-protein	unknown	unknown	unknown
NC_013357.1|WP_012817714.1|23961_24213_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl|CDD|183047
NC_013357.1|WP_012817719.1|30501_31452_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NC_013357.1|WP_012817718.1|28744_30496_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl|CDD|378245
NC_013357.1|WP_012817716.1|25733_27974_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|350688

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_013357.1|WP_012817720.1|31455_32127_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	1.4e-34	114.6	0.0
NC_013357.1|WP_012817717.1|28079_28748_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	5e-85	279.1	0.0
NC_013357.1|WP_012817722.1|33167_33458_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.3e-27	88.0	0.0
NC_013357.1|WP_012817721.1|32123_33158_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	5.9e-153	503.6	0.0
NC_013357.1|WP_012817719.1|30501_31452_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	4.3e-111	365.3	0.0
NC_013357.1|WP_012817718.1|28744_30496_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	8.5e-168	554.0	0.0
NC_013357.1|WP_012817716.1|25733_27974_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	7.1e-51	168.0	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_013357.1|WP_012817720.1|31455_32127_+|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.03367e-43
NC_013357.1|WP_012817717.1|28079_28748_+|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.14421e-111
NC_013357.1|WP_012817722.1|33167_33458_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.01566e-31
NC_013357.1|WP_012817721.1|32123_33158_+|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_013357.1|WP_012817715.1|24193_24502_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	2.34884e-07
NC_013357.1|WP_012817724.1|39478_40663_+|alpha/beta-fold-hydrolase	gnl|CDD|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	2.15901e-10
NC_013357.1|WP_012817714.1|23961_24213_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl|CDD|183047	PRK11235, PRK11235, type II toxin-antitoxin system RelB/DinJ family antitoxin.	1.21691e-23
NC_013357.1|WP_012817719.1|30501_31452_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	8.18954e-147
NC_013357.1|WP_012817718.1|28744_30496_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_013357.1|WP_012817716.1|25733_27974_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.30907e-49

Protein sequences

>NC_013357.1|WP_012817722.1|33167_33458_+|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVSTTEGNGAKRLRAVAKSCRDFGQRVQFSVFEIEVDPAQWIKLKARLEDIILPTVDSLRYYYLGAHWQKRIEHVGAKPATDLNAPLII
>NC_013357.1|WP_012817721.1|32123_33158_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTMYVTTEGANLRKDGENIVAEIDGTERSRVPLHMVSSVVVFGAIFVTPPLMAALASAGITLTFLDRNGRFQARLEGPVSGNVLLRRAQYRVSDQSKDIVRSFLIGKISNQRAVLRRALRDYGSDYSIQERDRLETVTNRLGYIIRRVEYSDSTIDLLRGSEGEAAALYFSVFDYLIRSPDKTMRWTGRSRRPPRDRVNAILSFLYTLLTHDCRSALESIGLDPAVGFLHRDRPGRPSLALDLMEELRPVLADRLALSLINRRQLCSKDFISQDGGAVLMTDDCRRTVLIAWQDRKRAEKQHAFLDEKVPFGLVPYIQAQMLARHIRGDIDAYPPWFWK
>NC_013357.1|WP_012817720.1|31455_32127_+|CRISPR-associated-protein-Cas4
MVNDTSKISETDGEPIPLSALQHAVYCLRQAALIHLERVWADNRFTAEGHVLHAVADKIGHRKVRGIRRVMALPIISKKLNILGVADIVEFLPDTTGETAFPLEYKRGKPKLHRADEVQLCAQALCLEEMTGRLVPEGALFYAQTKRRVIVPFDDDLRNLTEATIIALRNILLSGKTPPPTIRRERCKACSLVEICHPKIVARPVRIWRAHMVDCMTSSGDDI
>NC_013357.1|WP_012817719.1|30501_31452_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTVITNRYDFALVFDVVNGNPNGDPDAGNLPRVDPETNRGLVTDVSLKRKIRNYVDLARHAEEGFHIYVEEGAILNNKNREAYTAIRGDDMKSGKGGKLNPENDDEAKKLTDFMCRNFFDVRCFGAVMATGVNCGQVKGPVQMSFARSVEPILPLEITITRMAATNEAEKKKGAEGDDSNSRSDNRTMGRKYIVPYGLYVAHGFISAKFAERTGFSEQDLQLLFDALKNMFEHDRSAARGEMATRKLIVFKHENALGNAPAHILFDRIKIGRNIDNQIHPIDSRLDNLLPARAFSDYIVDIDRENFPAGVEILELI
>NC_013357.1|WP_012817718.1|28744_30496_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSVIASLVEAYTRFPDTPPFGYSAEQISYVISLNDDGTVAHVIDLRVENKKKRIPRKMFVPHSVKRAANIAPNFLWDKTSYVLGVTAKETKRTEEEHRAFVEKHINAIGDSTDVGLRAFRLFLENWCPEDFIGPVWREEMKDQNVVFALENNRLKNIYLHDSDASKSLWKEVSSEGEKKSDICLITGETSNIARLHPSIKGVWGAQSSGAALISFNLEAFTSYGHKQGRNAPISEASVFAYTTMLNYFLDRSSHHRFQIGDSSTIFWADAGNKQTAEDAESLFYTSIDIDDLHQEEKISTNRLQETLARLRRGEPIELVEPELAKGVHFYILGLSPNAARLSVRFFYSDNFCDLIHNYQSFVSDMRIEPPPHEEYPPLWRYLLETAVPRKRENIAPNLAGEWFRSILTGSSYPLTLLSSVIRRIRADGQVNGLRVGILKALLIRNFNRKDVPVALDPDNINKGYLLGRLFAVYEQIQTAALGSKVNATIKDKFYGSASAQPRKVFPVLDKGSASHLSKIGKEKPGFRIVLEKTVASIMEKMRPDADPFPTSLAAQDQALFGLGYYHQRSEFFKKAGNTANPEE
>NC_013357.1|WP_012817717.1|28079_28748_+|type-I-C-CRISPR-associated-protein-Cas5
MSYGIRLKVWGDNACFTRPEFKVERVSYDVMTPSAARGILEAIHWKPAIRWIIDAIHVLKPIRFQNIRRNEVGSKISPSKVKSAMKRSSLADLNLLVDKDRQQRASAILVAPAYVIEAHFVLTNKAGEEDNEGKHLDIFKRRAMRGQCFHQPCLGVREFAAYFKLLEDSEQIPKTIPVDQDLGFILFDIDHGKAGNLPMFFRAVMEQGVIKIPSPNSPEVRR
>NC_013357.1|WP_012817716.1|25733_27974_+|CRISPR-associated-helicase/endonuclease-Cas3
MTIYYAHSGDRLDKSDWQTMLDHAFSTARLAAKMADPFGLQKAAFVAGLFHDIGKYSTKFQQRLEGKNIAVDHSTAGAIQLLNITNGHDKGMAELISYAILGHHTGLPDRSNETNACYNRRILQPSQLDTVWEKDISPEISGLSPEMVKQFSGGLKEIAFSYAFMGRMIFSCLVDADFKDTEAFYARIGQISPDREWPQLNEVIDLFITRFEKYMAGLPKKGEINQLRANILSYVRQGAKRGAGLFTLTVPTGGGKTLASLGFALDHAKQHGHRRIIYAIPFTSIIDQTSAIFRSVLGDEYVLEHHAAMDAEISGAANTEQKNKLKLATEDWIAPVVVTTTVQLFESLFSARSSRARKLHHIAGSIIILDEAQTLPRHLLLPIMRVIDELASHYGCTIVLCTATQPMLGRRIGFEKGLLIEGRELAPDPLHLAGKLARTQIKYGGIMDNAALVEALRINSQILIVVNSRRHALELYNLAKEAGISGLVHLTTRHYAVDRRRILTDIRNRLETGEHCRLISTSLIEAGVDVDFPVGFRAEAGLDQIIQTAGRVNREGKRKKEDSLVTVFSCPDYAPPREIKDLIGDMGRIIGNHDNIASPMAVEDYFREVYWRLADGLDEKKILDRFILSKNTTDFAYRKVSTDFRMIENGMAPVIIAIEDRAKKAVEMLRVKDIPSSKIARELQGYIVQIPPKDRDALIRNGQARFEEPELRGDQFAVLQKNDFYQDDVGLIWENYDHLSVDDMII
>NC_013357.1|WP_012817715.1|24193_24502_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSSSNHKVYEIAFRDDLAEKHWKKLSHEAKAQFVKQLKKICNYPELAKPLRGDLSGFYKLKLRTLGYRLVYELRESELVLVIIDTDTRNNDRIYNSVKKRSK
>NC_013357.1|WP_012817714.1|23961_24213_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MSQISLRVDRNLKEAAYDQLKNLGVTPSDFFRDMLEYVVRENKLPVRRELISDEDADLLAMVKRRLKQPEKLKKVSFDELLQS
>NC_013357.1|WP_012817712.1|22620_23070_+|hypothetical-protein
MNKCYNLFVKALIPSVLLGGFLIETAHAENSALTIHYAIPNYVSTVNDGSNIIIFGTVNIVESRDKHSGSIYKYAVLHTENPYRIREGEDIDDSNITPTTFIQLNQHSSMKEFIPYMGRYVKISGKISSTNGGGPMLDYNSISFAKNDD
>NC_013357.1|WP_012817724.1|39478_40663_+|alpha/beta-fold-hydrolase
MPFSYSIYKKLRIFVGISCCFVAIPGYTALAKMKQMPGFVTASSFLPKAYSLPGAGRSLRITYLSTNGVTGQGLVPVTAEVILPAGKAPAGGWPIVAWAHGTVGVSNNCAPSRNPWSERNSRYLSEWMKRGFAIVATDYQGFGTPLPHPYLNTRAEAYGLLDAVRAAISSAAPLENKIMIVGQSQGGGAAFASAAFAPEYAPELNIRGIVATGTPYMTPELLKQITKPSDNMAYNPMVVYSFYLAQGFAGYHPSFKPSEIFTARAMPAYHAAAKICVGPLAAKVKKEGLTFDNSLKPDFSEKIAPALAAMQYPTMKLKYPLFTGTGELDKDVPPALQLALVKAACAAGTTVEAHLYKGLDHSQTVNASLPDSAVFTNAVMSGKTIASQCEAVPQ

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013357_1	1.1|33702|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	33702-33735	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	33702-33735	0	1.0
NC_013357_1	1.2|33768|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	33768-33802	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	33768-33802	0	1.0
NC_013357_1	1.3|33835|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	33835-33868	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	33835-33868	0	1.0
NC_013357_1	1.4|33901|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	33901-33935	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	33901-33935	0	1.0
NC_013357_1	1.5|33968|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT	33968-34000	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	33968-34000	0	1.0
NC_013357_1	1.6|34033|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34033-34066	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34033-34066	0	1.0
NC_013357_1	1.7|34099|32|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34099-34130	32	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34099-34130	0	1.0
NC_013357_1	1.8|34163|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34163-34196	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34163-34196	0	1.0
NC_013357_1	1.9|34229|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34229-34262	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34229-34262	0	1.0
NC_013357_1	1.10|34295|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34295-34328	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34295-34328	0	1.0
NC_013357_1	1.11|34361|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34361-34394	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34361-34394	0	1.0
NC_013357_1	1.12|34427|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34427-34462	36	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34427-34462	0	1.0
NC_013357_1	1.13|34495|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34495-34527	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34495-34527	0	1.0
NC_013357_1	1.14|34560|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34560-34595	36	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34560-34595	0	1.0
NC_013357_1	1.15|34628|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34628-34662	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34628-34662	0	1.0
NC_013357_1	1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34695-34728	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34695-34728	0	1.0
NC_013357_1	1.17|34761|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34761-34795	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34761-34795	0	1.0
NC_013357_1	1.18|34828|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34828-34861	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34828-34861	0	1.0
NC_013357_1	1.19|34894|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34894-34928	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34894-34928	0	1.0
NC_013357_1	1.20|34961|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34961-34994	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	34961-34994	0	1.0
NC_013357_1	1.21|35027|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35027-35062	36	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35027-35062	0	1.0
NC_013357_1	1.22|35095|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35095-35128	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35095-35128	0	1.0
NC_013357_1	1.23|35161|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35161-35194	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35161-35194	0	1.0
NC_013357_1	1.24|35227|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35227-35260	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35227-35260	0	1.0
NC_013357_1	1.25|35293|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35293-35325	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35293-35325	0	1.0
NC_013357_1	1.26|35358|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35358-35392	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35358-35392	0	1.0
NC_013357_1	1.27|35425|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35425-35458	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35425-35458	0	1.0
NC_013357_1	1.28|35491|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35491-35524	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35491-35524	0	1.0
NC_013357_1	1.29|35557|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35557-35591	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35557-35591	0	1.0
NC_013357_1	1.30|35624|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35624-35656	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35624-35656	0	1.0
NC_013357_1	1.31|35689|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35689-35724	36	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35689-35724	0	1.0
NC_013357_1	1.32|35757|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35757-35791	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35757-35791	0	1.0
NC_013357_1	1.33|35824|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35824-35857	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35824-35857	0	1.0
NC_013357_1	1.34|35890|37|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35890-35926	37	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35890-35926	0	1.0
NC_013357_1	1.35|35959|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35959-35993	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35959-35993	0	1.0
NC_013357_1	1.36|36026|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	36026-36060	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36026-36060	0	1.0
NC_013357_1	1.37|36093|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	36093-36127	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36093-36127	0	1.0
NC_013357_1	1.38|36160|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	36160-36194	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36160-36194	0	1.0
NC_013357_1	1.39|36227|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT	36227-36259	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36227-36259	0	1.0
NC_013357_1	1.40|36292|36|NC_013357|CRISPRCasFinder,CRT	36292-36327	36	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36292-36327	0	1.0
NC_013357_1	1.41|36360|35|NC_013357|CRISPRCasFinder,CRT	36360-36394	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36360-36394	0	1.0
NC_013357_1	1.42|36427|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36427-36459	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36427-36459	0	1.0
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36492-36525	0	1.0
NC_013357_1	1.44|36558|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36558-36591	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36558-36591	0	1.0
NC_013357_1	1.45|36624|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36624-36657	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36624-36657	0	1.0
NC_013357_1	1.46|36690|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36690-36722	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36690-36722	0	1.0
NC_013357_1	1.47|36755|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36755-36787	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36755-36787	0	1.0
NC_013357_1	1.48|36820|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36820-36852	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36820-36852	0	1.0
NC_013357_1	1.49|36885|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36885-36918	34	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	36885-36918	0	1.0
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	NC_013784	Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence	8057-8090	1	0.971
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	NZ_CP023686	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence	11168-11201	1	0.971
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	NZ_CP023680	Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence	11168-11201	1	0.971
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	NZ_CP003712	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence	18352-18385	1	0.971
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	NZ_CP003718	Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence	8057-8090	1	0.971
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	CP036464	Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence	11168-11201	1	0.971
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	CP036460	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence	11168-11201	1	0.971
NC_013357_1	1.25|35293|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35293-35325	33	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35358-35390	2	0.939
NC_013357_1	1.26|35358|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35358-35392	35	NC_013357	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence	35293-35327	4	0.886
NC_013357_1	1.31|35689|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35689-35724	36	NZ_CP013941	Cronobacter malonaticus LMG 23826 plasmid pCMA1, complete sequence	109902-109937	8	0.778
NC_013357_1	1.31|35689|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT	35689-35724	36	NC_023024	Cronobacter malonaticus plasmid p1, complete sequence	104538-104573	8	0.778
NC_013357_1	1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34695-34728	34	MT580116	Salmonella phage 65FD, complete genome	11173-11206	9	0.735
NC_013357_1	1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34695-34728	34	MT580117	Salmonella phage 66FD, complete genome	2011-2044	9	0.735
NC_013357_1	1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT	34695-34728	34	MT261384	Salmonella virus PAT1, complete genome	31809-31842	9	0.735
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	KU686209	Synechococcus phage S-CAM22 isolate 1209TA19, complete genome	17007-17040	9	0.735
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	KU686208	Synechococcus phage S-CAM22 isolate 0310NB44, complete genome	17038-17071	9	0.735
NC_013357_1	1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR	36492-36525	34	KU686207	Synechococcus phage S-CAM22 isolate 0210CC35, complete genome	17043-17076	9	0.735

1. spacer 1.1|33702|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

aatgctagcttcgtaaaagcaaagattggcgggc	CRISPR spacer
aatgctagcttcgtaaaagcaaagattggcgggc	Protospacer
**********************************

2. spacer 1.2|33768|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ccagtcaaatgtatcggccagtcgcctaacgccac	CRISPR spacer
ccagtcaaatgtatcggccagtcgcctaacgccac	Protospacer
***********************************

3. spacer 1.3|33835|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

aaaactccgcctttggtgatatctgaaacatcat	CRISPR spacer
aaaactccgcctttggtgatatctgaaacatcat	Protospacer
**********************************

4. spacer 1.4|33901|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

attgaaatatccattgccaccaaaggaaacaagcg	CRISPR spacer
attgaaatatccattgccaccaaaggaaacaagcg	Protospacer
***********************************

5. spacer 1.5|33968|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

catacagactgaataccgcagtaaattactgac	CRISPR spacer
catacagactgaataccgcagtaaattactgac	Protospacer
*********************************

6. spacer 1.6|34033|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

caattctatggcaatacccctcttctgggcgact	CRISPR spacer
caattctatggcaatacccctcttctgggcgact	Protospacer
**********************************

7. spacer 1.7|34099|32|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

gctagaaaggccggctttcttagcaatgctac	CRISPR spacer
gctagaaaggccggctttcttagcaatgctac	Protospacer
********************************

8. spacer 1.8|34163|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

accaaagactctgaagctgtgaatattttactta	CRISPR spacer
accaaagactctgaagctgtgaatattttactta	Protospacer
**********************************

9. spacer 1.9|34229|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

attgactgtatgcacaaagcaatggttttcgcgc	CRISPR spacer
attgactgtatgcacaaagcaatggttttcgcgc	Protospacer
**********************************

10. spacer 1.10|34295|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

taataagttcaagcagtctatcggccaattcatg	CRISPR spacer
taataagttcaagcagtctatcggccaattcatg	Protospacer
**********************************

11. spacer 1.11|34361|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

gattatacgggctttccagagattggtgttatag	CRISPR spacer
gattatacgggctttccagagattggtgttatag	Protospacer
**********************************

12. spacer 1.12|34427|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

agcatatctttgccggacatactcttggcaacaagc	CRISPR spacer
agcatatctttgccggacatactcttggcaacaagc	Protospacer
************************************

13. spacer 1.13|34495|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

tgaatggatgtggtctaatcctgatgcaaacag	CRISPR spacer
tgaatggatgtggtctaatcctgatgcaaacag	Protospacer
*********************************

14. spacer 1.14|34560|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

acttcgatacgacgaatgtcttgtgttggaagcggc	CRISPR spacer
acttcgatacgacgaatgtcttgtgttggaagcggc	Protospacer
************************************

15. spacer 1.15|34628|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

tacatgtcgtgaaaactgtctcggcgggtcaggtg	CRISPR spacer
tacatgtcgtgaaaactgtctcggcgggtcaggtg	Protospacer
***********************************

16. spacer 1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

accggtcagaacataatcgacgttggcctcgtgg	CRISPR spacer
accggtcagaacataatcgacgttggcctcgtgg	Protospacer
**********************************

17. spacer 1.17|34761|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

accaagttccttgtaccggttagcgcaggtctccg	CRISPR spacer
accaagttccttgtaccggttagcgcaggtctccg	Protospacer
***********************************

18. spacer 1.18|34828|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ttatttcatcagaagacgactcaccattaactgc	CRISPR spacer
ttatttcatcagaagacgactcaccattaactgc	Protospacer
**********************************

19. spacer 1.19|34894|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

aaatcaacgttagaccctgttggcgagagcattgc	CRISPR spacer
aaatcaacgttagaccctgttggcgagagcattgc	Protospacer
***********************************

20. spacer 1.20|34961|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

catccatccatcccaaagaccgttgaatactgtg	CRISPR spacer
catccatccatcccaaagaccgttgaatactgtg	Protospacer
**********************************

21. spacer 1.21|35027|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ttccaagaccgttcctgtcattgtaatttcgcataa	CRISPR spacer
ttccaagaccgttcctgtcattgtaatttcgcataa	Protospacer
************************************

22. spacer 1.22|35095|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ttatcagattgttgtcgatcacaatcgtgtctgc	CRISPR spacer
ttatcagattgttgtcgatcacaatcgtgtctgc	Protospacer
**********************************

23. spacer 1.23|35161|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

atagagacgataaagtttctatttgcaaaaaagg	CRISPR spacer
atagagacgataaagtttctatttgcaaaaaagg	Protospacer
**********************************

24. spacer 1.24|35227|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

atcataattcggttcggctttcgagccatctttg	CRISPR spacer
atcataattcggttcggctttcgagccatctttg	Protospacer
**********************************

25. spacer 1.25|35293|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ggactttgaatacgcgatcttgccaagagaaga	CRISPR spacer
ggactttgaatacgcgatcttgccaagagaaga	Protospacer
*********************************

26. spacer 1.26|35358|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

agactttgaatacgcgatcttgccgagagaagaac	CRISPR spacer
agactttgaatacgcgatcttgccgagagaagaac	Protospacer
***********************************

27. spacer 1.27|35425|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

acccaaggtaatgctatcatgcagataattcttt	CRISPR spacer
acccaaggtaatgctatcatgcagataattcttt	Protospacer
**********************************

28. spacer 1.28|35491|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

caactatagcctgcgtgattttcctacgttcttg	CRISPR spacer
caactatagcctgcgtgattttcctacgttcttg	Protospacer
**********************************

29. spacer 1.29|35557|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

aacgtctttaccgatttccccccatgtatgaacaa	CRISPR spacer
aacgtctttaccgatttccccccatgtatgaacaa	Protospacer
***********************************

30. spacer 1.30|35624|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

atctccccgaaatgactgttgagtagaatatta	CRISPR spacer
atctccccgaaatgactgttgagtagaatatta	Protospacer
*********************************

31. spacer 1.31|35689|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

accagcgaattacgccacaaaaaccctgatttgtgc	CRISPR spacer
accagcgaattacgccacaaaaaccctgatttgtgc	Protospacer
************************************

32. spacer 1.32|35757|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

tttaatgacggactgcattttacgcatacgtgcat	CRISPR spacer
tttaatgacggactgcattttacgcatacgtgcat	Protospacer
***********************************

33. spacer 1.33|35824|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

gagaaattcttccgcgccttgactttcgaacttg	CRISPR spacer
gagaaattcttccgcgccttgactttcgaacttg	Protospacer
**********************************

34. spacer 1.34|35890|37|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

tgccactgctggccggttgaaattatggccaaatcaa	CRISPR spacer
tgccactgctggccggttgaaattatggccaaatcaa	Protospacer
*************************************

35. spacer 1.35|35959|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

tgaatcttatcagttgcattattcgcgaggccagc	CRISPR spacer
tgaatcttatcagttgcattattcgcgaggccagc	Protospacer
***********************************

36. spacer 1.36|36026|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ccccatggtggccgtcgcggggacgcgctgagcgc	CRISPR spacer
ccccatggtggccgtcgcggggacgcgctgagcgc	Protospacer
***********************************

37. spacer 1.37|36093|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ggttttaatgaaccatgcaaaagttgctttgaaat	CRISPR spacer
ggttttaatgaaccatgcaaaagttgctttgaaat	Protospacer
***********************************

38. spacer 1.38|36160|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

cttcccaagctgtctaaaacgtttgttttttggac	CRISPR spacer
cttcccaagctgtctaaaacgtttgttttttggac	Protospacer
***********************************

39. spacer 1.39|36227|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

gctctatctgtccgcaggcaacaggcgggtttt	CRISPR spacer
gctctatctgtccgcaggcaacaggcgggtttt	Protospacer
*********************************

40. spacer 1.40|36292|36|NC_013357|CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

accgagcatatagcttattttgtcgaagtcgctcat	CRISPR spacer
accgagcatatagcttattttgtcgaagtcgctcat	Protospacer
************************************

41. spacer 1.41|36360|35|NC_013357|CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

aaaacaaacttgacgaatcacttcggggttatcat	CRISPR spacer
aaaacaaacttgacgaatcacttcggggttatcat	Protospacer
***********************************

42. spacer 1.42|36427|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

cattattcacaagagcgcgaagtttgccggatt	CRISPR spacer
cattattcacaagagcgcgaagtttgccggatt	Protospacer
*********************************

43. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatctctggaaacaattatgtcaggtgcggctg	Protospacer
**********************************

44. spacer 1.44|36558|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

gtccccaaggcagagaaatcatcgacaggcatcg	CRISPR spacer
gtccccaaggcagagaaatcatcgacaggcatcg	Protospacer
**********************************

45. spacer 1.45|36624|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaagaaggcgcggcttcgatcgcgacaatgg	CRISPR spacer
ggtaaagaaggcgcggcttcgatcgcgacaatgg	Protospacer
**********************************

46. spacer 1.46|36690|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

aatgctttgaagctgctcaatgagtggctgcat	CRISPR spacer
aatgctttgaagctgctcaatgagtggctgcat	Protospacer
*********************************

47. spacer 1.47|36755|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

cggcaacgtcagggtatgattaccgagccttta	CRISPR spacer
cggcaacgtcagggtatgattaccgagccttta	Protospacer
*********************************

48. spacer 1.48|36820|33|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

taacaaagtgtatcgagcacaccgaggcaataa	CRISPR spacer
taacaaagtgtatcgagcacaccgaggcaataa	Protospacer
*********************************

49. spacer 1.49|36885|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 0, identity: 1.0

ttgatcgtacccgttgcatctcgctcgcgagcaa	CRISPR spacer
ttgatcgtacccgttgcatctcgctcgcgagcaa	Protospacer
**********************************

50. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NC_013784 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence) position: , mismatch: 1, identity: 0.971

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatcgctggaaacaattatgtcaggtgcggctg	Protospacer
***** ****************************

51. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023686 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 8b plasmid pZM41, complete sequence) position: , mismatch: 1, identity: 0.971

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatcgctggaaacaattatgtcaggtgcggctg	Protospacer
***** ****************************

52. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023680 (Zymomonas mobilis subsp. mobilis strain ZM4 substr. 2032 plasmid pZM36, complete sequence) position: , mismatch: 1, identity: 0.971

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatcgctggaaacaattatgtcaggtgcggctg	Protospacer
***** ****************************

53. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP003712 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence) position: , mismatch: 1, identity: 0.971

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatcgctggaaacaattatgtcaggtgcggctg	Protospacer
***** ****************************

54. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP003718 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence) position: , mismatch: 1, identity: 0.971

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatcgctggaaacaattatgtcaggtgcggctg	Protospacer
***** ****************************

55. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to CP036464 (Zymomonas mobilis strain ZM4* plasmid pZM36o, complete sequence) position: , mismatch: 1, identity: 0.971

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatcgctggaaacaattatgtcaggtgcggctg	Protospacer
***** ****************************

56. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to CP036460 (Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 strain ZM4 plasmid pER79ap36, complete sequence) position: , mismatch: 1, identity: 0.971

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatcgctggaaacaattatgtcaggtgcggctg	Protospacer
***** ****************************

57. spacer 1.25|35293|33|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 2, identity: 0.939

ggactttgaatacgcgatcttgccaagagaaga	CRISPR spacer
agactttgaatacgcgatcttgccgagagaaga	Protospacer
.***********************.********

58. spacer 1.26|35358|35|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_013357 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002, complete sequence) position: , mismatch: 4, identity: 0.886

agactttgaatacgcgatcttgccgagagaagaac	CRISPR spacer
ggactttgaatacgcgatcttgccaagagaagagt	Protospacer
.***********************.********..

59. spacer 1.31|35689|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013941 (Cronobacter malonaticus LMG 23826 plasmid pCMA1, complete sequence) position: , mismatch: 8, identity: 0.778

accagcgaattacgccacaaaaaccctgatttgtgc	CRISPR spacer
cacgctggatgacgccacaaaaaccctgatttctgc	Protospacer
  *. .*.** ********************* ***

60. spacer 1.31|35689|36|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to NC_023024 (Cronobacter malonaticus plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.778

accagcgaattacgccacaaaaaccctgatttgtgc	CRISPR spacer
cacgctggatgacgccacaaaaaccctgatttctgc	Protospacer
  *. .*.** ********************* ***

61. spacer 1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to MT580116 (Salmonella phage 65FD, complete genome) position: , mismatch: 9, identity: 0.735

accggtcagaacataatcgacgttggcctcgtgg	CRISPR spacer
aacggtcagaacattatcgacgctggtggcactg	Protospacer
* ************ *******.***.  *.. *

62. spacer 1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to MT580117 (Salmonella phage 66FD, complete genome) position: , mismatch: 9, identity: 0.735

accggtcagaacataatcgacgttggcctcgtgg	CRISPR spacer
aacggtcagaacattatcgacgctggtggcactg	Protospacer
* ************ *******.***.  *.. *

63. spacer 1.16|34695|34|NC_013357|PILER-CR,CRISPRCasFinder,CRT matches to MT261384 (Salmonella virus PAT1, complete genome) position: , mismatch: 9, identity: 0.735

accggtcagaacataatcgacgttggcctcgtgg	CRISPR spacer
aacggtcagaacattatcgacgctggtggcactg	Protospacer
* ************ *******.***.  *.. *

64. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to KU686209 (Synechococcus phage S-CAM22 isolate 1209TA19, complete genome) position: , mismatch: 9, identity: 0.735

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatctgtagaaacaattatgtcacctggttttt	Protospacer
****** *.***************  **   .* 

65. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to KU686208 (Synechococcus phage S-CAM22 isolate 0310NB44, complete genome) position: , mismatch: 9, identity: 0.735

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatctgtagaaacaattatgtcacctggttttt	Protospacer
****** *.***************  **   .* 

66. spacer 1.43|36492|34|NC_013357|CRISPRCasFinder,CRT,PILER-CR matches to KU686207 (Synechococcus phage S-CAM22 isolate 0210CC35, complete genome) position: , mismatch: 9, identity: 0.735

ggatctctggaaacaattatgtcaggtgcggctg	CRISPR spacer
ggatctgtagaaacaattatgtcacctggttttt	Protospacer
****** *.***************  **   .*