CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013223	Desulfohalobium retbaense DSM 5692, complete sequence	1 crisprs	RT,Cas9_archaeal,cas3HD,cas3,cas8u1,cas7,csb2gr5,csa3,cas2,DEDDh	0	2	5	0
NC_013224	Desulfohalobium retbaense DSM 5692 plasmid pDRET01, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013223_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013223_1

1876848-1877552

Unclear

Consensus_repeat	Method
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	CRISPRCasFinder
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	PILER-CR
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACNNNNNNNNNNNNNNNNNNNN	CRT

9 spacers

csb2gr5,cas7,cas8u1,cas3

The CRISPR arrays of NC_013223_1

>merge|NC_013223|1|1876848-1877552|CRISPRCasFinder,PILER-CR,CRT
GGAACAATGGAGCCACACTTTTCAGTGTGGTTGAGACCTACACGCACGGCTCAGGTGGCAGCGCACCGGTGACGCTTCAATGGAGCCACACTTTTCAGTGTGGTTGAGACATGTTGGTGGTGGTTGAGACACGCCAGAGCCGTTGCTGACCGACTCGCCAACCGTGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACGATGGGAGCGGCCCACAAAATACGCAGTGATGAAGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACGTTTGCCCCGGCCCAAGGGGTCGCATCCGATGTGCCGGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACTCGTTAACTGGAGCACACCCGGCGGCTGGAACCAGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACCGGCGGCCCTGAACAGGGACCTGTCGTTCTTGTCGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACTTGTCGCCGTCATTGGTCAGGGCGGTGAAATCGGTGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACCAGAGCAGCGGAACATGGTGGAACAGCGTGTAGATGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGACTTCGTCAACTGGAGCACCCCCGGCGGCTGGAACCAGCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC

>NC_013223|1|1|1876848-1877552|CRISPRCasFinder
GGAACAATGGAGCCACACTTTTCAGTGTGGTTGAGAC	CTACACGCACGGCTCAGGTGGCAGCGCACCGGTGAC
GCTTCAATGGAGCCACACTTTTCAGTGTGGTTGAGAC	ATGTTGGTGGTGGTTGAGACACGCCAGAGCCGTTGCTGACCGACTCGCCAACCGT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	GATGGGAGCGGCCCACAAAATACGCAGTGATGAA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	GTTTGCCCCGGCCCAAGGGGTCGCATCCGATGTGCCG
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TCGTTAACTGGAGCACACCCGGCGGCTGGAACCA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	CGGCGGCCCTGAACAGGGACCTGTCGTTCTTGTC
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TTGTCGCCGTCATTGGTCAGGGCGGTGAAATCGGT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	CAGAGCAGCGGAACATGGTGGAACAGCGTGTAGAT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TTCGTCAACTGGAGCACCCCCGGCGGCTGGAACCA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC

>NC_013223|1|1|1876921-1877552|PILER-CR
GCTTCAATGGAGCCACACTTTTCAGTGTGGTTGAGAC	ATGTTGGTGGTGGTTGAGACACGCCAGAGCCGTTGCTGACCGACTCGCCAACCGT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	GATGGGAGCGGCCCACAAAATACGCAGTGATGAA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	GTTTGCCCCGGCCCAAGGGGTCGCATCCGATGTGCCG
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TCGTTAACTGGAGCACACCCGGCGGCTGGAACCA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	CGGCGGCCCTGAACAGGGACCTGTCGTTCTTGTC
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TTGTCGCCGTCATTGGTCAGGGCGGTGAAATCGGT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	CAGAGCAGCGGAACATGGTGGAACAGCGTGTAGAT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TTCGTCAACTGGAGCACCCCCGGCGGCTGGAACCA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC

>NC_013223|1|1|1876941-1877552|CRT
TTCAGTGTGGTTGAGACATGTTGGTGGTGGTTGAGAC	ACGCCAGAGCCGTTGCTGACCGACTCGCCAACCGT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	GATGGGAGCGGCCCACAAAATACGCAGTGATGAA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	GTTTGCCCCGGCCCAAGGGGTCGCATCCGATGTGCCG
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TCGTTAACTGGAGCACACCCGGCGGCTGGAACCA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	CGGCGGCCCTGAACAGGGACCTGTCGTTCTTGTC
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TTGTCGCCGTCATTGGTCAGGGCGGTGAAATCGGT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	CAGAGCAGCGGAACATGGTGGAACAGCGTGTAGAT
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC	TTCGTCAACTGGAGCACCCCCGGCGGCTGGAACCA
GCTTCAATGGGGCCACACTTTGCAGTGTGGTTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013223.1\|WP_015752046.1\|1865803_1866769_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379213
NC_013223.1\|WP_015752051.1\|1874398_1875382_+\|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09678_cas7_CAS-I-U	gnl\|CDD\|378223
NC_013223.1\|WP_015752062.1\|1885351_1885876_+\|hypothetical-protein	unknown	unknown	unknown
NC_013223.1\|WP_015752049.1\|1869713_1872056_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|187827
NC_013223.1\|WP_015752064.1\|1886406_1886625_+\|sulfite-reductase	unknown	unknown	gnl\|CDD\|370055
NC_013223.1\|WP_015752054.1\|1877729_1878395_-\|nuclease	unknown	unknown	gnl\|CDD\|214615
NC_013223.1\|WP_041281958.1\|1868836_1869307_+\|hypothetical-protein	unknown	unknown	unknown
NC_013223.1\|WP_015752060.1\|1881290_1884386_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225461
NC_013223.1\|WP_015752048.1\|1867978_1868671_+\|hypothetical-protein	unknown	unknown	unknown
NC_013223.1\|WP_015752059.1\|1880894_1881191_+\|hypothetical-protein	unknown	unknown	unknown
NC_013223.1\|WP_015752047.1\|1867119_1867356_+\|hypothetical-protein	unknown	unknown	unknown
NC_013223.1\|WP_015752055.1\|1878375_1878603_-\|hypothetical-protein	unknown	unknown	unknown
NC_013223.1\|WP_015752063.1\|1886189_1886333_+\|desulfoferrodoxin-FeS4-iron-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273011
NC_013223.1\|WP_015752058.1\|1879605_1880397_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|380319
NC_013223.1\|WP_015752052.1\|1875385_1876822_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NC_013223.1\|WP_015752056.1\|1878673_1878874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376740
NC_013223.1\|WP_015752045.1\|1865299_1865791_+\|siphovirus-Gp157-family-protein	unknown	unknown	gnl\|CDD\|368503
NC_013223.1\|WP_015752050.1\|1872048_1874406_+\|type-I-U-CRISPR-associated-protein-Csx17	cas8u1	cd09767_cas8u1_CAS-I-U	gnl\|CDD\|274989
NC_013223.1\|WP_015752057.1\|1879244_1879451_-\|DUF2905-domain-containing-protein	unknown	unknown	gnl\|CDD\|378570
NC_013223.1\|WP_015752044.1\|1865048_1865249_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013223.1\|WP_015752046.1\|1865803_1866769_+\|ATP-binding-protein	gnl\|CDD\|379213	pfam13479, AAA_24, AAA domain. This AAA domain is found in a wide variety of presumed phage proteins.	6.89256e-27
NC_013223.1\|WP_015752051.1\|1874398_1875382_+\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	6.32367e-55
NC_013223.1\|WP_015752050.1\|1872048_1874406_+\|type-I-U-CRISPR-associated-protein-Csx17	gnl\|CDD\|274989	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc. Members of this protein family are found exclusively in CRISPR-associated (cas) type I system gene clusters of the Dpsyc subtype. Markers for that type include a variant form of cas3 (model TIGR02621) and the GSU0054-like protein family (model TIGR02165). This family occurs in less than half of known Dpsyc clusters.	0
NC_013223.1\|WP_015752064.1\|1886406_1886625_+\|sulfite-reductase	gnl\|CDD\|370055	pfam08679, DsrD, Dissimilatory sulfite reductase D (DsrD). The structure of the DsrD protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins. The structure suggests a possible role for DsrD in transcription of translation of genes which catalyze dissimilatory sulfite reduction.	2.72037e-25
NC_013223.1\|WP_015752054.1\|1877729_1878395_-\|nuclease	gnl\|CDD\|214615	smart00318, SNc, Staphylococcal nuclease homologues.	2.93668e-24
NC_013223.1\|WP_015752060.1\|1881290_1884386_-\|hypothetical-protein	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	4.27186e-44
NC_013223.1\|WP_015752056.1\|1878673_1878874_-\|hypothetical-protein	gnl\|CDD\|376740	pfam02211, NHase_beta, Nitrile hydratase beta subunit. Nitrile hydratases EC:4.2.1.84 are unusual metalloenzymes that catalyze the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit.	0.00174031
NC_013223.1\|WP_015752063.1\|1886189_1886333_+\|desulfoferrodoxin-FeS4-iron-binding-domain-containing-protein	gnl\|CDD\|273011	TIGR00320, Desulfoferrodoxin_homolog, desulfoferrodoxin. The short N-terminal domain contains four conserved Cys for binding of a ferric iron atom, and is homologous to the small protein desulforedoxin; this domain may also be responsible for dimerization. The remainder of the molecule binds a ferrous iron atom and is similar to neelaredoxin, a monomeric blue non-heme iron protein. The homolog from Treponema pallidum scores between the trusted cutoff for orthology and the noise cutoff. Although essentially a full length homolog, it lacks three of the four Cys residues in the N-terminal domain; the domain may have lost ferric binding ability but may have some conserved structural role such as dimerization, or some new function. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough. [Energy metabolism, Electron transport].	5.59315e-11
NC_013223.1\|WP_015752058.1\|1879605_1880397_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|380319	cd02143, nitroreductase_FeS-like, nitroreductases with an N-terminal iron-sulfur cluster-binding domain. Members of this family utilize FMN as a cofactor. This family may be involved in the reduction of flavin or nitroaromatic compounds via an obligatory two-electron transfer. Nitroreductase is homodimer. Each subunit contains one FMN molecule.	5.61256e-96
NC_013223.1\|WP_015752052.1\|1875385_1876822_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.78126e-30
NC_013223.1\|WP_015752045.1\|1865299_1865791_+\|siphovirus-Gp157-family-protein	gnl\|CDD\|368503	pfam05565, Sipho_Gp157, Siphovirus Gp157. This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophages. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage.	5.54476e-40
NC_013223.1\|WP_015752049.1\|1869713_1872056_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187827	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DNA helicase Cas3; This protein includes both DEAH and HD motifs; signature gene for Type I.	3.2557e-63
NC_013223.1\|WP_015752057.1\|1879244_1879451_-\|DUF2905-domain-containing-protein	gnl\|CDD\|378570	pfam11146, DUF2905, Protein of unknown function (DUF2905). This is a family of bacterial proteins conserved of unknown function.	2.5118e-14

>NC_013223.1|WP_015752052.1|1875385_1876822_+|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MLALEFSFPAGRYHANPWGRNVNEGEAEWPPSPYRLARTLIDIQKRRFPDWSQSRIEAVLVAISGKPFYTLPPATTAHIRSFMSSNQKDASKKQKIFDSFVALGREEILYIAFDHKLDAQTRSDLTALVAEINYLGRSESWVSVGLKDLPEVAEWDCLPSDVAPEDPQYEIEKLACVLPKGDYQALPVSERVSWFDALCLSTQDLLKQGWSTPPALAWVDYARKRSKLNQSSLEETRARTQRDYRHIKYAVHSKVRPHVRETILFAERVRAKLMGIHRKTQGDDPEKVSAKFSGKNLDGLPLENHKHAFFLPLDEDNDGRIDHLLITADEPFDSTELMALDRLRSIWQPHGKPDASLILTSVQKNARPKHAKTWISVTPFVTARHFRKGRGTYWGWLTGEIKRECRFHFLPQPQEVNWIQWTMNGPQPIRWMEFTRGKREERPFRGHGCILRFDSPVPGPFALGARGHFGLGLFQPLE
>NC_013223.1|WP_015752051.1|1874398_1875382_+|type-I-U-CRISPR-associated-protein-Cas7
MLEKLKNSKRILMEAELEPVQGDRFQPTGFPDIGAGTYQLPDGTRKILLESAQSMANRLENTIIDPGGELIEELKGLSYVKVDLEGESNAKTNSLMEAHRLNSPFIITDAKFQQTFKEEADYAKGKPIDWRKIAKTIFKYDVNSLLHGVFLANLEDGRIKIPRAITGFIEAIDAREVVYGGVKNNPIDPSGKIRAQEYDKDVYGNVPYQRMEYTASAIKVFFNFDLGMIRSYELGDNAEELLIALGLLKIRLFLEGGLRLRTACDLQLKNSDLTVSRPKDFVIPTSEELLKAIQEKIENCKEMFASPPVTKISTQTVSKETNQNTSG
>NC_013223.1|WP_015752050.1|1872048_1874406_+|type-I-U-CRISPR-associated-protein-Csx17
MHEYTLPGCSTRPLGSYLKGLAVFRLVAEQKDPDVTAWWDKGTFRVHTRLAPEELTSFFCEQYTPTPIITPWNGGSSFYPGDNTEGLEAIVQTGDSRFRIYKEAIEAVSSWPEWGKNVNTVRELMAALQGMISSSNPGKKQDELFTLQNNITNLAEKVKTTEGGDPLGMRLVDLSSRASEKAEVYKQLWNTAKKARTVYTKDIREQTKKIILPLCRSRLPDACLEWLDALCAIHADGEISYHQVLGSGGNDARLDFGNNFMKKISALLLGSDQSASRKFLSASLWGTSVEGLPKTKIGQFDPGRAGGYNQGMGIEAKDFTASPWDFILTIEGTLLLASSVGKRQGVSTGSTLTSPFTVRFSPVGFTSNVYTEPEGPETEIWMPLWNQPARYGEIKQLFSEGRCSIGKRQAKSGLEFSRAVGTLGVDRGITAFERYGFLKRRGENKVALPAGKIAVRFKPSLELVNELDPLLSKLDQFLRAFKKPPTSFLQARQKIDQNIFNCTLQPDPVQFLKIVRSLGQMEKRIALRDRDKDPKLPQPLFGLSPQWIIKSDDGSPETRIAAALASIHSTGKVGPIRSNMAGVRAQAPWHWEDRDSQQHWFGSDLTEKLGNVLTYRLMDAERKSVSNIPFMGNLELSPYDVMPFLHQETKDDLLEDLLWGFTLINWRKSGIQSIRNKWEKPTQQTVLSRTWCLLKLLHHPNKIKGHSFKREKSISHLLQAHRVDEACNKATQRLRISNLHPFPIYFEEELEPQRLLASLMLPVKDQHILENLVLERTTITGETHA
>NC_013223.1|WP_015752049.1|1869713_1872056_+|CRISPR-associated-helicase-Cas3'
MDFTSLFKQTVGNDLHPYPYQVALAHRDWPDIVDIPTGLGKTAAIITTWIYKRLQQDPQTPRRLVYCLPMRVLVEQTAAHAEQWVNALTEQHIYTEASRPLVHLLMGGDVDQNWDAMPERDQILIGTQDQLLSRALNRGYSMSRFRWPVHFGLLNNDCLWVMDEIQLMGEGLATTAQLQAFREHFQSAFPVRSVWMSATLRPSWLSTIDFSPRVDSLVSQSLSESDLTHSAVTKRLEASKPLEKAPCSSNEPKKLAQFALECHKAGTRTLVVLNTVKRAQALFQHLKKHKPKCDLVLIHSRFRAQDKAHAIEKLLSPVNEQGTICVTTQVIEAGVDVSSSTLITDLAPWASLIQRFGRCNRDGHENDAKIYWLGLDITKKGHSAPYKADELLKATHILESLLNAKPSTLPAPNNDPQYLHVLRKKDLVDLFDTTPDIAGADIDVSRFIRDVDDYSLQVFWRYLDGKEPSALEPAPAKQELCNVPITSLQSAPDLKKWRWDYLEKEWQRIWRNEELYPGLTILLDTAAGGYSAELGWTGNKNDVPAPLPTREKPFEAHDDDTITSMGWQTLSDHVQAVVNELDLLLDCLPLDDYESIEALKLAARWHDSGKAHPVFQEAMVKNTTPPEQNKLWGKTFLGNVTYSRRGFRHELASALAMIENGLPDLAVYLAAAHHGKLRLTIRSLPNETKPDQMEKRFAKGIWDGDVLPEAELGNGTVMSETTLDLSVMELGEGAKGPSWLSRTLKLRDSQRLGPFKLAYLEALLRIADWRASRNQDSSHA
>NC_013223.1|WP_041281958.1|1868836_1869307_+|hypothetical-protein
MTTEKSAPKKSSPFMWIAIGIVALIFVGARQIHPRGVRGLLGDLIVSAQSSPEIEAIHDKMLTALKPIGAAALCLKHSDDPGIHKAVEKYNRRNSAELKKLVNTIKAEGGMSQSEKDLLDRQAMQEARKFIDKGSKRDTVCDNLEFRLNSGEFDLE
>NC_013223.1|WP_015752048.1|1867978_1868671_+|hypothetical-protein
METKPKLAILEIIACIFGWLWICASFAALYFIAMVIFSDGAWEPFFWALGVSVVSRWLAYGFKDNMKRVDHEENLTDKKYPPKNHVEDWPREGLSNKKNQSQDNNIVSIIQEYGKAIEYDAPKPGCVADENKLPFPKNTIKKAIISELKSSGNDEIKEYLKVAYIQLADWQQGVGPIDKGPDMSSIDKNQDIEDRAKAFLDQVSGSENWTAMAQKEQEALKQELQELGLW
>NC_013223.1|WP_015752047.1|1867119_1867356_+|hypothetical-protein
MAQRKKHGPNFKAKVALEAVKGDQAMAELASNWGVHPTQTTNWKRHLLDELPELLKNKDKKAKIPVPCRMRYTRKSVS
>NC_013223.1|WP_015752046.1|1865803_1866769_+|ATP-binding-protein
MFRTAKRQQAKLRLALVGPSGSGKTYSSLLLAKGLGGKVAMIDTERGSGELYADLVDYDVQQLSPPFEPQAYINALNEAEAAGYEILIIDSLSHAWAGQGGVLEIVDKANKVMRNNFAAWREATPQHNALVDAMLQSGLHLIVTMRTKTHYDMLKDEKTGKVRPVKVGLAPVQRDGLEYEFTTVLDLSVEGHIAVASKDRTGLFDGDFFKPHEQTGEGLRQWLDGSGHEQKKPEVEILKLLKGEVGDKHYEGINQILEKLRALGLAEHVSEYEQYLQKKYTASLKELSSDQIGDQLENLNRCEQDSQLLQRLQNYLCSLAA
>NC_013223.1|WP_015752045.1|1865299_1865791_+|siphovirus-Gp157-family-protein
MTNLAAIEHEISTILTVADELDGEQQEVALDYLRDLGIQEEAKVDGISFAVRKRKNEIEWLKTEEKRIKARRQAIENRLEGFREYLRWLMEENGLQRLKGRLGSISLRNVDSVQVRSLGEVPREFVEEVVTYKARKREILNALKAGEAIPGASLHTRKVAYIR
>NC_013223.1|WP_015752044.1|1865048_1865249_+|hypothetical-protein
MTSAQAQQYQSAVALWALLRPYSGLKLQLDCGHHVTLCPGHPLVNDIVIRQSARRLVCPSCAYTGM
>NC_013223.1|WP_015752054.1|1877729_1878395_-|nuclease
MRRFMANPLIALGRFVLVWFIILLSPGLVFSWTGKAVHIKDGDTIVVLRDHTEVDVRLYGIDCPEKRQHFGTRAKRFTAKMVGMQRVEVQEMDVDRYGRVVGLVALAGSGESLNAALLYNGLAWVYHKYCGQDFCGRWITLERKAKLAKRGLWGQPNPIPPWEWRHGGRSGSQSRSGAGGDKDCSDFSTQAQAQRFFEAHQPGDPHQLDGDGDGQVCEGLP
>NC_013223.1|WP_015752055.1|1878375_1878603_-|hypothetical-protein
MAPYTYIDPQTGLLRSTKRYLEAGAMIQKVRRTRKMLQTMSREDLDLYDLSGVLDSTLKEAQEMLKEFKYETLYG
>NC_013223.1|WP_015752056.1|1878673_1878874_-|hypothetical-protein
MAQKLDVPSAQTSWEDVAYSNMIQTEALAQLLVEKGILTKDEFSRKVEEIHATFMAQQPHPGQSEA
>NC_013223.1|WP_015752057.1|1879244_1879451_-|DUF2905-domain-containing-protein
MGRLVMAIGVGIVVVGAVLHFAPWLLNWFGKLPGDIRFEGERTKVFLPITSMIVISLVVSLLLNIFRR
>NC_013223.1|WP_015752058.1|1879605_1880397_+|4Fe-4S-dicluster-domain-containing-protein
MHQIQITPEKCLQDGICVQTCPFGLFRDHPDGIPEIVDGAGELCIGCGHCVAICPGEAISLDGQGPEWCDPVDRTWAPSKEQILYHFRSRRSIRVYKEEAVDRPTLESLLDLARWAPSARNGQPVHWIVFQDHEAIHNLARLVVDWMRHKNLLPEIVHAFDNGKDMINRHAPCLVVAHASEQALKPVEDCSIALAHIEAAAPAFGLGGCWAGFFMTAAQQYQPLVDVLDLPQGHRVYGALMLGVPRFSYRRIPPRQELQVQWR
>NC_013223.1|WP_015752059.1|1880894_1881191_+|hypothetical-protein
MSSWQIPIGIPWYRREDYDRLKDIFDDGAEFQTSYEDWLTASEDAATALSRRQYKVERVTIDPDAFCDWCRKNGRRMDALARTAFANAVVDQKYGLGF
>NC_013223.1|WP_015752060.1|1881290_1884386_-|hypothetical-protein
MCPQATNQAKFARPALSQVVPRARLFDRLREHGRSSFLWIAAPAGFGKTTLVASYLEAQEVPSVWFRLDGGDGDPNSFFLTLEQAVRLVFPDAPACVGPRFEQPLSSLSRNFFSHLSLVCAPQTYLVFDNAHELEDSHEFWEMLSTGLACAGPALRVVFMSRSSPPDPFVTLLASDRLRELPAEELRLNREEVVEMVRRDPPQAGIGSALIPNLLAACNGWAACLRLVLRHLRFAPLSAQWVDLDRPPPELVTYFSTELFQAIDPDLRCFLLNLAVFPWFDADMATRLTGVAEAASILERMAGESFFTSVHRSAPDAPSIYIFHSLFRNFLRVEARKIFSSEQWQDLFQRAGRLLEEAGDAEAAINAYSAAGDTEAWVATALRHAPSLLASGRHKNLERWLAPLPAQCQKRWPWTVFWLAGSRFPESIAQSRDLYAQALDLFQDQGDHRGMLLAWAGRMACLIHGQAPRPAVVSALELFDTDLTTFYSLEKDEWTRAVVAAAVFLAKVLCAPEPETIRWGETALGFAERLQAKDLLIHVCFGAVLYFLPRGENERLAGLITQVRFQCSVPALPALPAATLLATDMLGRMTQAREEEALALATQGLQLVRQSGVTLFEAFFLGYSAACAMNTGDLEAAERFLDSMAKASLATRRWDRSLYCFLSARLSLLRGAYADAERWVRQVLDREEDEGPLGTLCLSLVGAAQIAFCLGWREQAEERLAQAGVLARQYQFTLAEWAAAMAQAYWALAEGDRDSCRAVLKPALALGRRNMLYVTLVDVPAQLAEVCVAALEEGMEVPYVQRLVRQRRLLPSRPPLHVQNWPWRYRIFTLGVFAVQRNEREMRFGGKAPQQTLNVLKALIACGREQVPCHLLSDLLWEEAPGDAAHNALKTQVHRLRRLLGDPKVLTWQGKRLSLDPSLVWVDVGALSSIFERFGSGELALAPTDVVRLVLDLYKGPFLPEIEESWVFEPRRRFAALFSRVVTALGRRLEETGQWMEALFLYSQAQEREANGGRWDKRIEYVRGKLNGGAL
>NC_013223.1|WP_015752062.1|1885351_1885876_+|hypothetical-protein
MSSEQTPSLPEAAGEDLFNYAVDREDMKWLVETVFQSEQTAANTVEYELQLLKIISVGWSIAYYLEESPLKQQILRSFWEPVREFATTLSQSAELFTGQDFDYFELLKQRLDTYLQAMGQAPQGTEPVNVIGPAFAELCGNSEDAFASLVGAKMFGTALGRVQEYLTESAILPQ
>NC_013223.1|WP_015752063.1|1886189_1886333_+|desulfoferrodoxin-FeS4-iron-binding-domain-containing-protein
MPAQGEFYRCTLCGNVVEVKQAGDGDLTCCDMPMEDLTENEAKQFKD
>NC_013223.1|WP_015752064.1|1886406_1886625_+|sulfite-reductase
MLGEEAKDKLEAELQKKSSNKSKFYFNDLAKILDEKPRQAKKVVTEMVNEGRLSLWSSGSTTMYTLPGQGGY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013223_1	1.5\|1877195\|34\|NC_013223\|CRISPRCasFinder,PILER-CR,CRT	1877195-1877228	34	NZ_CP012941	Ralstonia solanacearum strain UW163 plasmid pUW163a, complete sequence	45922-45955	7	0.794
NC_013223_1	1.3\|1877050\|34\|NC_013223\|CRISPRCasFinder,PILER-CR,CRT	1877050-1877083	34	CP002294	Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence	45997-46030	9	0.735
NC_013223_1	1.3\|1877050\|34\|NC_013223\|CRISPRCasFinder,PILER-CR,CRT	1877050-1877083	34	NZ_CP016623	Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI001, complete sequence	68994-69027	9	0.735

1. spacer 1.5|1877195|34|NC_013223|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP012941 (Ralstonia solanacearum strain UW163 plasmid pUW163a, complete sequence) position: , mismatch: 7, identity: 0.794

tcgttaactggagcacacccggcggctggaacca	CRISPR spacer
gctttttctggagcacacccggcgggtggaagcc	Protospacer
 * **  ****************** ***** *

2. spacer 1.3|1877050|34|NC_013223|CRISPRCasFinder,PILER-CR,CRT matches to CP002294 (Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence) position: , mismatch: 9, identity: 0.735

gatgggagcggcccacaaaatacgcagtgatgaa	CRISPR spacer
tatggaagcggcccaaaaaatacgcagcgcaatc	Protospacer
 ****.********* ***********.*  .

3. spacer 1.3|1877050|34|NC_013223|CRISPRCasFinder,PILER-CR,CRT matches to NZ_CP016623 (Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI001, complete sequence) position: , mismatch: 9, identity: 0.735

gatgggagcggcccacaaaatacgcagtgatgaa	CRISPR spacer
tatggaagcggcccaaaaaatacgcagcgcaatc	Protospacer
 ****.********* ***********.*  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

423781 : 487504

Burkholderia_virus(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015750802.1\|423781_425008_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.7e-20	26.9
WP_015750803.1\|425125_427225_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.0e-08	54.5
WP_015750804.1\|427905_428847_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015750805.1\|428953_429826_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_015750806.1\|429870_430854_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
WP_015750807.1\|430837_431317_+	hypothetical protein	NA	NA	NA	NA
WP_052293252.1\|431345_432254_-	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_015750809.1\|432647_433547_+	EamA family transporter	NA	NA	NA	NA
WP_015750810.1\|433941_436221_-	mechanosensitive channel protein	NA	NA	NA	NA
WP_015750811.1\|436505_437267_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015750812.1\|437517_438366_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_148213992.1\|438512_439877_-	radical SAM protein	NA	NA	NA	NA
WP_015750815.1\|440737_441997_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_015750816.1\|442578_443475_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015750817.1\|443797_445909_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_015750818.1\|446019_446910_-	LPS biosynthesis protein	NA	NA	NA	NA
WP_015750819.1\|447157_447475_+	MarR family EPS-associated transcriptional regulator	NA	NA	NA	NA
WP_015750822.1\|449375_450194_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_083777058.1\|450988_451249_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_015750825.1\|451245_451437_+	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_015750828.1\|452184_453645_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.9e-54	29.5
WP_015750829.1\|454037_454580_+	hypothetical protein	NA	NA	NA	NA
WP_041281824.1\|454689_455058_+	hypothetical protein	NA	NA	NA	NA
WP_148213994.1\|455118_456078_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9KZK0	Tupanvirus	1.1e-86	48.8
WP_083777061.1\|456096_456579_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015750832.1\|457123_458524_-\|transposase	ISKra4-like element ISDere1 family transposase	NA	NA	NA	NA
WP_015750833.1\|458626_459853_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	6.0e-21	27.1
WP_015750835.1\|461070_461553_+\|transposase	transposase	NA	NA	NA	NA
WP_083777063.1\|461549_462596_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.4e-09	29.4
WP_015750837.1\|462977_464114_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015750838.1\|464314_465361_+	glycosyltransferase	NA	NA	NA	NA
WP_015750839.1\|465366_466428_+	sulfotransferase	NA	NA	NA	NA
WP_015750840.1\|466477_467653_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_015750841.1\|467615_468533_+	sulfotransferase	NA	NA	NA	NA
WP_015750842.1\|468529_469933_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_167317781.1\|470262_471318_+	hypothetical protein	NA	NA	NA	NA
WP_015750844.1\|471335_472514_+	glycosyltransferase	NA	NA	NA	NA
WP_083777250.1\|472560_473226_+	NAD-dependent epimerase/dehydratase family protein	Q58M85	Prochlorococcus_phage	9.1e-24	32.4
WP_015750845.1\|473304_474609_+	DUF362 domain-containing protein	NA	NA	NA	NA
WP_015750846.1\|474598_475999_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA
WP_015750847.1\|475995_478161_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_041281831.1\|478269_478605_+	hypothetical protein	NA	NA	NA	NA
WP_015750849.1\|478588_478996_+	helix-turn-helix transcriptional regulator	A0A2H4J1D2	uncultured_Caudovirales_phage	3.1e-06	48.4
WP_041281832.1\|478973_479405_+	hypothetical protein	NA	NA	NA	NA
WP_041282162.1\|479427_481080_+	heparinase	NA	NA	NA	NA
WP_015750852.1\|481076_482288_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_153304096.1\|482284_482434_+	hypothetical protein	NA	NA	NA	NA
WP_015750853.1\|482862_484083_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	3.1e-54	32.7
WP_015750854.1\|484884_485799_+	hypothetical protein	NA	NA	NA	NA
WP_015750832.1\|486103_487504_-\|transposase	ISKra4-like element ISDere1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

720314 : 765393

Pseudomonas_phage(20.0%)

transposase,integrase

attL 720308:720344|attR 772677:772713

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
720308:720344	attL	NA	NA	NA	NA
WP_015751054.1\|720314_721541_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.7e-20	26.3
WP_015751055.1\|722078_722342_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
WP_015751056.1\|722346_722706_+	flagellar protein FlgN	NA	NA	NA	NA
WP_015751057.1\|722708_724391_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_015751058.1\|724393_725272_+	flagellar hook-associated protein 3	NA	NA	NA	NA
WP_015751059.1\|725334_725595_+	carbon storage regulator CsrA	L7TH77	Pseudomonas_virus	8.7e-07	39.1
WP_015751060.1\|725581_726046_+	flagellar assembly protein FliW	NA	NA	NA	NA
WP_015751061.1\|726307_727522_-	hypothetical protein	NA	NA	NA	NA
WP_015751063.1\|728689_729511_-	hypothetical protein	NA	NA	NA	NA
WP_015751064.1\|730235_731237_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A1V0SAI8	Catovirus	1.9e-41	38.2
WP_015751065.1\|731233_732451_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L0G1	Tupanvirus	2.0e-32	33.1
WP_167317785.1\|732732_734268_+	hypothetical protein	NA	NA	NA	NA
WP_015751067.1\|734260_735913_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_015751068.1\|735912_736995_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_148214005.1\|737004_737997_+	N-acetylneuraminic acid synthase	NA	NA	NA	NA
WP_015751070.1\|737993_738989_+	formyl transferase	E3SNR5	Prochlorococcus_phage	4.5e-11	31.8
WP_015751071.1\|738993_740829_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_148214067.1\|740852_741758_+	methyltransferase domain-containing protein	E3T531	Cafeteria_roenbergensis_virus	2.6e-05	27.5
WP_015751073.1\|741785_743003_+	hypothetical protein	NA	NA	NA	NA
WP_148214006.1\|743132_744266_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_015751075.1\|744297_745020_+	pseudaminic acid cytidylyltransferase	NA	NA	NA	NA
WP_015751076.1\|745345_747073_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_015751077.1\|747083_748895_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.2e-31	31.1
WP_083777096.1\|749088_749415_+\|transposase	transposase	NA	NA	NA	NA
WP_015751078.1\|750008_751346_+\|transposase	transposase	NA	NA	NA	NA
WP_015751079.1\|751885_753211_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	8.7e-34	31.4
WP_148214007.1\|753221_753905_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	9.4e-08	28.6
WP_015751080.1\|754668_755175_+	hypothetical protein	NA	NA	NA	NA
WP_015751081.1\|755210_757148_+	motility associated factor glycosyltransferase family protein	NA	NA	NA	NA
WP_015751082.1\|757454_758300_+	flagellin	NA	NA	NA	NA
WP_015751083.1\|758348_759194_+	flagellin	NA	NA	NA	NA
WP_015751084.1\|759274_759700_+	flagellar protein FlaG	NA	NA	NA	NA
WP_015751085.1\|759748_761152_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_015751086.1\|761167_761626_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_083777101.1\|761757_762450_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_015751089.1\|762972_763800_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	7.1e-34	35.8
WP_015751090.1\|763878_765393_-\|transposase	IS21 family transposase	NA	NA	NA	NA
772677:772713	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1128017 : 1178732

uncultured_Mediterranean_phage(18.18%)

protease,transposase,integrase,tRNA

attL 1119231:1119248|attR 1179171:1179188

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1119231:1119248	attL	NA	NA	NA	NA
WP_015751398.1\|1128017_1129418_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_015751399.1\|1129877_1130297_-	hypothetical protein	NA	NA	NA	NA
WP_015751400.1\|1130293_1130836_-	hypothetical protein	NA	NA	NA	NA
WP_015751401.1\|1130853_1131258_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_015751402.1\|1132173_1132815_-	lactate utilization protein	NA	NA	NA	NA
WP_015751403.1\|1132804_1133080_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015751404.1\|1133180_1133510_+	hypothetical protein	NA	NA	NA	NA
WP_015751405.1\|1133964_1134963_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_015751406.1\|1135313_1136429_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_015750613.1\|1136413_1137814_-	group II intron reverse transcriptase/maturase	H7BVN7	unidentified_phage	2.1e-17	25.9
WP_015751407.1\|1138546_1139827_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-96	45.1
WP_015751408.1\|1140121_1141603_-	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_015751409.1\|1141624_1141870_-	DUF5395 domain-containing protein	NA	NA	NA	NA
WP_148214019.1\|1141883_1142087_-	hypothetical protein	NA	NA	NA	NA
WP_015751411.1\|1142329_1144735_+	DUF3365 domain-containing protein	NA	NA	NA	NA
WP_015751412.1\|1144969_1146391_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_015751413.1\|1146405_1146888_+	CinA family protein	B5TK85	Pseudomonas_phage	1.9e-23	45.3
WP_015751414.1\|1147053_1147791_+	hypothetical protein	NA	NA	NA	NA
WP_015751415.1\|1147872_1148457_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_015751416.1\|1149102_1149804_-	DUF1614 domain-containing protein	NA	NA	NA	NA
WP_015751417.1\|1149932_1151690_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-53	30.9
WP_015751418.1\|1151917_1152154_+	hypothetical protein	NA	NA	NA	NA
WP_041282310.1\|1152233_1153232_-	hypothetical protein	NA	NA	NA	NA
WP_015751420.1\|1153240_1154377_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_041281910.1\|1154516_1155125_-	HAD family hydrolase	NA	NA	NA	NA
WP_015751422.1\|1155389_1156439_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_015751423.1\|1156472_1156889_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_148214071.1\|1157156_1159055_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_015751425.1\|1159051_1159714_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	9.4e-21	29.3
WP_083777139.1\|1159664_1160381_+	heme ABC transporter permease CcmB	NA	NA	NA	NA
WP_052293328.1\|1160425_1161112_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_015751428.1\|1161289_1161442_+	CcmD family protein	NA	NA	NA	NA
WP_015751429.1\|1161431_1161995_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015751430.1\|1162005_1163463_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.5e-95	41.7
WP_015751431.1\|1163562_1165110_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.3e-16	28.7
WP_015751432.1\|1165450_1165873_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_148214072.1\|1165926_1166844_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.0e-33	35.1
WP_015751434.1\|1166824_1167406_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_015751435.1\|1167417_1168053_+	hypothetical protein	NA	NA	NA	NA
WP_015751436.1\|1168049_1168781_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_015751437.1\|1168889_1169087_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_015751438.1\|1169306_1170542_-	uracil-xanthine permease	Q9KX94	Enterobacteria_phage	4.4e-56	37.8
WP_015751439.1\|1170663_1171290_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_015751440.1\|1171383_1173027_+	dephospho-CoA kinase	A0A2H4UV25	Bodo_saltans_virus	2.1e-05	30.4
WP_015751441.1\|1173269_1174013_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_015751442.1\|1174183_1174942_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_015751443.1\|1174961_1176134_+	SufD family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_015751006.1\|1176443_1177670_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	1.7e-20	26.3
WP_012813891.1\|1177838_1178732_-\|transposase	IS3 family transposase	NA	NA	NA	NA
1179171:1179188	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1647202 : 1657484

Staphylococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015751850.1\|1647202_1647433_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	2.2e-09	48.5
WP_015751851.1\|1647696_1648944_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_015751852.1\|1648954_1650217_+	serine hydroxymethyltransferase	Q8JKP0	Heliothis_zea_nudivirus	6.6e-92	47.8
WP_015751853.1\|1650213_1650675_+	cytidine deaminase	A0A160DDE4	Gordonia_phage	6.3e-24	41.5
WP_015751854.1\|1650685_1651840_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2I2L4R9	Orpheovirus	1.1e-40	32.4
WP_015751855.1\|1651858_1652521_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.9e-28	32.3
WP_015751856.1\|1652630_1653848_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-97	47.4
WP_015751857.1\|1653986_1654457_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-29	44.3
WP_015751858.1\|1654464_1654908_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_015751859.1\|1654988_1657484_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	8.5e-200	45.7

DBSCAN-SWA_5

1850492 : 1858365

Staphylococcus_phage(16.67%)

integrase

attL 1844494:1844506|attR 1860545:1860557

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1844494:1844506	attL	NA	NA	NA	NA
WP_015752029.1\|1850492_1851221_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.9e-25	30.0
WP_015752030.1\|1851201_1851747_-	OstA family protein	NA	NA	NA	NA
WP_015752031.1\|1851743_1852322_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_015752032.1\|1852300_1852822_-	HAD hydrolase family protein	A0A222YVZ6	Synechococcus_phage	5.5e-08	29.2
WP_015752033.1\|1852811_1853627_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	4.5e-49	41.7
WP_015752034.1\|1853627_1855268_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	52.0
WP_015752035.1\|1855559_1856366_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015752036.1\|1856392_1856890_+	nucleoside deaminase	S4VYZ2	Pandoravirus	3.6e-09	37.7
WP_015752037.1\|1857180_1858365_+\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	5.3e-99	47.2
1860545:1860557	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage