CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014010	Candidatus Puniceispirillum marinum IMCC1322, complete sequence	3 crisprs	cas3,DEDDh,DinG,csa3,cas9,cas1,cas2	1	17	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014010_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014010_1

40-1792

Orphan

Consensus_repeat	Method
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	PILER-CR
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CRISPRCasFinder
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CRT

26 spacers

The CRISPR arrays of NC_014010_1

>merge|NC_014010|1|40-1792|PILER-CR,CRISPRCasFinder,CRT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACCGTGGTGGTCTCAAGCAGATAAACCCTTCCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTGACCGCTTGATATCGCATCACCGCACGGCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACGTAACGCCATTGTGCCGCAAGTCGCGGCGCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACATGAGCAGAATTCATTTATCACTTTGACTTAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTGAATATACCTAATCGTTCACTGCCATCTAAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACGGTAATGATGTCCACATGTCCAACTGCGTCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACCGTGCGGGCTTCATAGAACCGGATCGATCCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTATGCCAAGGCACTATCGGCTGAGGCACAAAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACACTATAAGGCAACACAACAAATCGATGTTAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTATGGCGGCGGGCGGCGTTCAACTGACAGCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACATAAAATCGCGTGACGAAAAGAAAACACTAAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTGAAAGTTGGTGTGCCTGCCGTCCTTGGCCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTGGTGGACAGATATAATACCTGTCATCATGAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACGAAGGACAGGTAGTGCCGCCAGCCCCTGAAAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACAAGAACGGCGCAAGACCTTATAGCTTTCATAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTCAACAGCTTTAGACCATTTATCACCGATTAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACCGTTGGACGGTAACGTCCAATAATTTATATAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACACTGGCAATTTATCGGACAAACTGAAATGGAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACAGTTGCAGGGCTTCCAATCCGAATGGGCAGAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTCAATAGGTACTGCTGGTTACGAAGCGTCAAAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACCAATCGCTTGGTCTACTTAAGACTTCTGGTAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACCGGTGATCCTAAAAATCCAGCTCGTTTGGGAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTTCCGATTCAGACGATCCACCGTCGCCAGAAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTGGATTGAGCTTGATCCTGCGCGCGATATCAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACTTACCCGCTACTTCCTGAAAGAATGCCAGTTAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACCGATCCCTCGATGATGGGTTGACCGCCGAAAGTATAGCACTCTGGTGATTGAGAGCCTACCCCCCA

>NC_014010|1|1|40-1726|PILER-CR
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTGGTGGTCTCAAGCAGATAAACCCTTCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGACCGCTTGATATCGCATCACCGCACGGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GTAACGCCATTGTGCCGCAAGTCGCGGCGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ATGAGCAGAATTCATTTATCACTTTGACTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGAATATACCTAATCGTTCACTGCCATCTA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GGTAATGATGTCCACATGTCCAACTGCGTC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTGCGGGCTTCATAGAACCGGATCGATCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TATGCCAAGGCACTATCGGCTGAGGCACAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ACTATAAGGCAACACAACAAATCGATGTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TATGGCGGCGGGCGGCGTTCAACTGACAGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ATAAAATCGCGTGACGAAAAGAAAACACTA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGAAAGTTGGTGTGCCTGCCGTCCTTGGCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGGTGGACAGATATAATACCTGTCATCATG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GAAGGACAGGTAGTGCCGCCAGCCCCTGAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	AAGAACGGCGCAAGACCTTATAGCTTTCAT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TCAACAGCTTTAGACCATTTATCACCGATT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTTGGACGGTAACGTCCAATAATTTATAT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ACTGGCAATTTATCGGACAAACTGAAATGG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	AGTTGCAGGGCTTCCAATCCGAATGGGCAG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TCAATAGGTACTGCTGGTTACGAAGCGTCAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CAATCGCTTGGTCTACTTAAGACTTCTGGT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGGTGATCCTAAAAATCCAGCTCGTTTGGG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TTCCGATTCAGACGATCCACCGTCGCCAGA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGGATTGAGCTTGATCCTGCGCGCGATATC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TTACCCGCTACTTCCTGAAAGAATGCCAGTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC

>NC_014010|1|1|40-1792|CRISPRCasFinder
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTGGTGGTCTCAAGCAGATAAACCCTTCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGACCGCTTGATATCGCATCACCGCACGGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GTAACGCCATTGTGCCGCAAGTCGCGGCGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ATGAGCAGAATTCATTTATCACTTTGACTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGAATATACCTAATCGTTCACTGCCATCTA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GGTAATGATGTCCACATGTCCAACTGCGTC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTGCGGGCTTCATAGAACCGGATCGATCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TATGCCAAGGCACTATCGGCTGAGGCACAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ACTATAAGGCAACACAACAAATCGATGTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TATGGCGGCGGGCGGCGTTCAACTGACAGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ATAAAATCGCGTGACGAAAAGAAAACACTA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGAAAGTTGGTGTGCCTGCCGTCCTTGGCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGGTGGACAGATATAATACCTGTCATCATG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GAAGGACAGGTAGTGCCGCCAGCCCCTGAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	AAGAACGGCGCAAGACCTTATAGCTTTCAT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TCAACAGCTTTAGACCATTTATCACCGATT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTTGGACGGTAACGTCCAATAATTTATAT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ACTGGCAATTTATCGGACAAACTGAAATGG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	AGTTGCAGGGCTTCCAATCCGAATGGGCAG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TCAATAGGTACTGCTGGTTACGAAGCGTCAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CAATCGCTTGGTCTACTTAAGACTTCTGGT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGGTGATCCTAAAAATCCAGCTCGTTTGGG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TTCCGATTCAGACGATCCACCGTCGCCAGA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGGATTGAGCTTGATCCTGCGCGCGATATC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TTACCCGCTACTTCCTGAAAGAATGCCAGTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGATCCCTCGATGATGGGTTGACCGCCGAA
AGTATAGCACTCTGGTGATTGAGAGCCTACCCCCCA

>NC_014010|1|1|40-1792|CRT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTGGTGGTCTCAAGCAGATAAACCCTTCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGACCGCTTGATATCGCATCACCGCACGGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GTAACGCCATTGTGCCGCAAGTCGCGGCGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ATGAGCAGAATTCATTTATCACTTTGACTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGAATATACCTAATCGTTCACTGCCATCTA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GGTAATGATGTCCACATGTCCAACTGCGTC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTGCGGGCTTCATAGAACCGGATCGATCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TATGCCAAGGCACTATCGGCTGAGGCACAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ACTATAAGGCAACACAACAAATCGATGTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TATGGCGGCGGGCGGCGTTCAACTGACAGC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ATAAAATCGCGTGACGAAAAGAAAACACTA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGAAAGTTGGTGTGCCTGCCGTCCTTGGCC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGGTGGACAGATATAATACCTGTCATCATG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	GAAGGACAGGTAGTGCCGCCAGCCCCTGAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	AAGAACGGCGCAAGACCTTATAGCTTTCAT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TCAACAGCTTTAGACCATTTATCACCGATT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGTTGGACGGTAACGTCCAATAATTTATAT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	ACTGGCAATTTATCGGACAAACTGAAATGG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	AGTTGCAGGGCTTCCAATCCGAATGGGCAG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TCAATAGGTACTGCTGGTTACGAAGCGTCAA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CAATCGCTTGGTCTACTTAAGACTTCTGGT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGGTGATCCTAAAAATCCAGCTCGTTTGGG
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TTCCGATTCAGACGATCCACCGTCGCCAGA
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TGGATTGAGCTTGATCCTGCGCGCGATATC
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	TTACCCGCTACTTCCTGAAAGAATGCCAGTT
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAAC	CGATCCCTCGATGATGGGTTGACCGCCGAA
AGTATAGCACTCTGGTGATTGAGAGCCTACCCCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014010.1\|WP_013044877.1\|4273_9064_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|227226
NC_014010.1\|WP_041860668.1\|2258_2684_-\|hypothetical-protein	unknown	unknown	unknown
NC_014010.1\|WP_041860670.1\|10262_10499_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_014010.1\|WP_013044885.1\|12449_12779_+\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|214961
NC_014010.1\|WP_013044876.1\|2922_3861_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|183067
NC_014010.1\|WP_190275454.1\|9302_9956_-\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NC_014010.1\|WP_013044874.1\|1804_2122_-\|hypothetical-protein	unknown	unknown	unknown
NC_014010.1\|WP_041860671.1\|12020_12206_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|223410
NC_014010.1\|WP_013044881.1\|10474_10864_-\|hypothetical-protein	unknown	unknown	unknown
NC_014010.1\|WP_013044882.1\|11018_11720_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807

Protein	Function_ID	Function_description	E-value
NC_014010.1\|WP_013044877.1\|4273_9064_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|227226	COG4889, COG4889, Predicted helicase [General function prediction only].	0
NC_014010.1\|WP_013044885.1\|12449_12779_+\|heat-shock-protein-HspQ	gnl\|CDD\|214961	smart00992, YccV-like, Hemimethylated DNA-binding protein YccV like. YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.	3.59514e-47
NC_014010.1\|WP_041860670.1\|10262_10499_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.83845e-14
NC_014010.1\|WP_013044876.1\|2922_3861_-\|DMT-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	2.13068e-14
NC_014010.1\|WP_190275454.1\|9302_9956_-\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	4.61183e-21
NC_014010.1\|WP_041860671.1\|12020_12206_+\|50S-ribosomal-protein-L32	gnl\|CDD\|223410	COG0333, RpmF, Ribosomal protein L32 [Translation, ribosomal structure and biogenesis].	1.86276e-19
NC_014010.1\|WP_013044882.1\|11018_11720_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	3.76011e-35

>NC_014010.1|WP_013044874.1|1804_2122_-|hypothetical-protein
MRRTIFHRFGYVCLGFGHACLHKLARCPRPRTGLGRAGCVFVIMALAVMVVSAIITPPTSHQQAAATPADMAIIHRMMQDQRAIARATRTYTLSTFAERFGHKGD
>NC_014010.1|WP_041860668.1|2258_2684_-|hypothetical-protein
MSGLSTLSLHIMMPGRPARLSGSSMTHDIAAAQAGTDMNASDRLATALHDLLSGLAGLARAGLARAMITRYSDAASIVSAPISVPFSVPFSVPFSVAFSGLIPALNPVWQAKVWQVQKTTAKLGVKQAVKQAIYWRPSVLL
>NC_014010.1|WP_013044876.1|2922_3861_-|DMT-family-transporter
MRLTNLIPLLFVWLWSTGFVGAKYGLPYIEPFFMLFIRFIFVIILIGLIVEIGRHRRATCRQAAGQMGVGLLLHGLYLGGVFYAIKQGVPAGISAVIVGLQPILISVLERVFLPQPARAQPYNSAHYRSQYIGLIAGFIGITLVVTGNGISGSGISGNGIAGLGLPDMSIIGLIANVIALFGISVGTIIQKRIGRDVPLLSGSLYQYLGATVMMLILTFTLETQAVTPTIELALALLWLVFGLSILAVILLMYMIREGEVVKVTSYFYLVPPVTLIQTWWLFDEQLNAVALVGCALTVFGVYKVVRAPSAPA
>NC_014010.1|WP_013044877.1|4273_9064_+|DEAD/DEAH-box-helicase
MTTFNDVLDALRAQARNTREQGTLFEDLMEAILPQLPDAGFEEVWSWKAWPDRHAQTGMNAQDVGIDLVGKREGEDGFCAIQCKFYDPDTSIAESDLGTFFTQSGKDAFSSRLIITTTDRWTKHAETAIRHQDKPTNRMRMADLAELAIDWDIHKPKQTKLDITKYTLNGRQKEARDAVITGLKDNDRGKLIMACGTGKTLTSLHIAEMMIEGTGHVLFMVPSISLLAQSLHEWSFQRRKDHRYIAVCSDTKVDRTSEDSAVEDLIFPASTNAHSVAHALRQKANRMTVVFCTYQSIDIIHQAQQMGAPAFDLVICDEAHRTTGIDRANLAKGKTSPFVRVHDGDYLKAAKRLYMTATPRIYTDHSKQKADDQNIGIYSMDDEAEFGTVLYRLSFSDAITEGLLSDYRVIVLNMSESHVSQTMQDAISDKNELSVDDAAKIVGCYNALRNRPEESDSKKLKRAVSFSSTIKKSKHVRDHFQAVVDKMDEQEHDGFTCQVDHVDGTNTALERKNKLDWLREPAGANEHGEICRILSNAKCLTEGVDVPALDAAIFMNPRKSQVDVVQAVGRVMRKAEGKDYGYVILPIVIPLGKTPEEALDDNETYAVVWEILRALRSHDDRLTNMISKLDLNATKPDFIQVIGGDAWDDQDSEKVKDGFQFGLDLGEEFRDAIYAKLVERVGDRQYWETWARDVAHIHELLITRITDLCASNPALQARFDGFVTSLQADINDNVDAGEAVSILAQHMITRPIFDALFDHYDFAGLNPVSQSLDMMLAELAPFGLENELRGMDRFYASVRDRVTGIDNAAARQKIVIELYEKFFKTAFPKVSESLGIAYTPVEIVDFILHSADHVLRTQFGRGIGDEDVHVIDPFTGTGTFINRLISNPALIPDEKLPHKFAHEIHANEMLLMAYYIASINIEEAYHVRMSKANGGAGGGAKTGGDYMPFPGIVLTDTFQLYERALSRQDDMDSHFMPDNNERRNRQINAPIRVIIGNPPYSAGQKSQNDANQNLTYPNLDESIRSTYAAQSTATNKNALYDSYIRAFKWASDRIGDEGVIALVSGAAWIDRPFADGMRKSLAEEFSSIHIFHLRGDIRKNMLSKGAAREGENVFGQASMTGIAITILTKQAGHVGDCAIYHHDIGDDLRRDDKLAKIADARSIAGLDWQTIIPNPEGDWLNQRDPAFQKLIALGSKDVKSRKVIAPDTVFKVYSGGVKTNRDPWAYNISQQKLVDNMQAMVGFYNEQLADFQAAKQNHSDLKAADFISNDPTKISWSRSLVADIGKLKSLIFSQQHITSSQYRPFTREYLYFDRRLNDMVYRMPSIFPKPDNENRVIAVTGVGSRSGFSCLIADCVPNLHYLDSGQCFPRWTFDEDGRNRQDNIPNEAVRRFRAHYADESITGDDIFDYVYGILHAPDYRTTFANDLTKALPRIPMAPDFRAFAKAGKQLGALHLNYETGDEYGLNILVDGDIALGDILLDDADYHVQKMRWASKTDKTAIRYNNRITLAGIPADALRYVVSGKPALDWVIDRYCIKTDKASGITNDANDWITEQIANGGNEGGAPDALIRLIQRVTHLSVETMKIVDNLPPSLEE
>NC_014010.1|WP_190275454.1|9302_9956_-|NERD-domain-containing-protein
MHSSLDADLYSIHENVIIPSGNGRHGTTQIDHIVISAFGLFIIETKNMDGWIFGNEKQAKWTQIHYQAKHQFQNPLRQTFRQKIMLANYLGLNRRNIHELISFVGDCEFKTDMPANVLQSGVDRYIKQFDRRIFDDVDVTRINDRFAQLQAQDSISDDEHIRSIYDRHSSSTHCPRCGSALTKRTAKRGNNVGNIFLGCTGYPRCRFVKDIPDDDES
>NC_014010.1|WP_041860670.1|10262_10499_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MASSKRTLKVREVIAALEKHGFTQEPAKGSHRKFKKAGHPGHVIVSGKSGSDVIQQTLKSMIAQSGLPDACLYGECDC
>NC_014010.1|WP_013044881.1|10474_10864_-|hypothetical-protein
MSKPAQDERAPVALKNVLQRLEGGVFMTKCEDGSHHIVATYPYIAVQGDSEDEASEIFIDALIDWFDERDAATGAERAHYDNLRMPIWERVKFKFLVWRDKFKASDHNNDNVERCQHGNYSAWHHQNAH
>NC_014010.1|WP_013044882.1|11018_11720_-|sel1-repeat-family-protein
MTTRPFTITSIHIPDPSRYGNARRTVAMMRGIVIALILCVLAIPFVTEAEAGTLPQDTSKQITTLRQQAAAGSAIAQFRLGEAFQRGQHVPQDMTTAHHYYSLAATQGHIRAQFRLGFLYERGLGVKQNFATAARFYHQAAHHNHPVAQHNLAILFAHGRGVKRNLQHAYGWARMAEINARQISTHPTRSHKPLSADFHAKLDKLLSRLRTRLSDGQITRAEWHIQLASGIPT
>NC_014010.1|WP_041860671.1|12020_12206_+|50S-ribosomal-protein-L32
MAVPKSKITKSKRNMRRAHDALSSDAYVEDKTTGELHRPHHIDLKTGMYRGKQVLKVKDRI
>NC_014010.1|WP_013044885.1|12449_12779_+|heat-shock-protein-HspQ
MNDKHAKFSIGAIVRHRLYPFRGVVVDVDPEFDNSEEWYNSIPAEARPEKDQPFYHLLAENADSYYTAYVSQQNLLADGENGPVGHPDIDEVFDSLDGECYVLRREAYN

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Crispr_ID: NC_014010_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014010_2

1270683-1270813

Orphan

Consensus_repeat	Method
TTCCAACGCTAGAAACTGGCGATAAGCCCGGCATTTATGTGGCGATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014010_2

>merge|NC_014010|2|1270683-1270813|CRISPRCasFinder
TTCCAACGCTAGAAACTGGCGATAAGCCCGGCATTTATGTGGCGATTTGCTGGCCTGTCCTATATTTGGTTTGGTGATACTGTTCCAACGCTAGAAACTGGCGATAAGCCCGGCATTTATATGGCGATTTG

>NC_014010|2|2|1270683-1270813|CRISPRCasFinder
TTCCAACGCTAGAAACTGGCGATAAGCCCGGCATTTATGTGGCGATTTG	CTGGCCTGTCCTATATTTGGTTTGGTGATACTG
TTCCAACGCTAGAAACTGGCGATAAGCCCGGCATTTATATGGCGATTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014010.1\|WP_041860800.1\|1276548_1277583_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_014010.1\|WP_013046052.1\|1260247_1262020_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
NC_014010.1\|WP_013046067.1\|1280658_1281717_-\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|238341
NC_014010.1\|WP_013046050.1\|1257066_1257864_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_014010.1\|WP_013046062.1\|1275049_1275259_-\|hypothetical-protein	unknown	unknown	unknown
NC_014010.1\|WP_013046063.1\|1275292_1276348_-\|dipeptidase	unknown	unknown	gnl\|CDD\|366534
NC_014010.1\|WP_013046055.1\|1264371_1266843_-\|GcvT-family-protein	unknown	unknown	gnl\|CDD\|223481
NC_014010.1\|WP_013046061.1\|1274128_1275022_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_014010.1\|WP_013046069.1\|1283063_1283915_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_014010.1\|WP_013046060.1\|1273625_1273952_-\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|224648
NC_014010.1\|WP_148212381.1\|1269376_1269991_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NC_014010.1\|WP_013046065.1\|1277582_1279577_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
NC_014010.1\|WP_013046054.1\|1262787_1264335_-\|trimethylamine-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|227885
NC_014010.1\|WP_013046068.1\|1281716_1283045_-\|alpha-glucosidase/alpha-galactosidase	unknown	unknown	gnl\|CDD\|185035
NC_014010.1\|WP_013046051.1\|1257908_1260251_+\|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|224170
NC_014010.1\|WP_013046053.1\|1262129_1262741_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_014010.1\|WP_013046066.1\|1279571_1280666_-\|galactokinase	unknown	unknown	gnl\|CDD\|179937
NC_014010.1\|WP_013046058.1\|1270139_1270559_-\|DUF983-domain-containing-protein	unknown	unknown	gnl\|CDD\|368773
NC_014010.1\|WP_013046056.1\|1266845_1269338_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223481
NC_014010.1\|WP_013046049.1\|1255743_1257042_+\|O-acetylhomoserine-aminocarboxypropyltransferase	unknown	unknown	gnl\|CDD\|225428

Protein	Function_ID	Function_description	E-value
NC_014010.1\|WP_041860800.1\|1276548_1277583_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.5766e-175
NC_014010.1\|WP_013046052.1\|1260247_1262020_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.56579e-135
NC_014010.1\|WP_013046067.1\|1280658_1281717_-\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	2.77821e-79
NC_014010.1\|WP_013046050.1\|1257066_1257864_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.41963e-31
NC_014010.1\|WP_013046063.1\|1275292_1276348_-\|dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	1.46866e-94
NC_014010.1\|WP_013046055.1\|1264371_1266843_-\|GcvT-family-protein	gnl\|CDD\|223481	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism].	4.2649e-107
NC_014010.1\|WP_013046061.1\|1274128_1275022_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.64305e-10
NC_014010.1\|WP_013046069.1\|1283063_1283915_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	9.77569e-72
NC_014010.1\|WP_013046060.1\|1273625_1273952_-\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	2.71735e-10
NC_014010.1\|WP_148212381.1\|1269376_1269991_-\|cupin-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	6.56776e-23
NC_014010.1\|WP_013046065.1\|1277582_1279577_+\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	1.62469e-168
NC_014010.1\|WP_013046054.1\|1262787_1264335_-\|trimethylamine-methyltransferase-family-protein	gnl\|CDD\|227885	COG5598, COG5598, Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism].	0
NC_014010.1\|WP_013046068.1\|1281716_1283045_-\|alpha-glucosidase/alpha-galactosidase	gnl\|CDD\|185035	PRK15076, PRK15076, alpha-galactosidase; Provisional.	0
NC_014010.1\|WP_013046051.1\|1257908_1260251_+\|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|224170	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].	9.51957e-74
NC_014010.1\|WP_013046053.1\|1262129_1262741_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.20005e-39
NC_014010.1\|WP_013046066.1\|1279571_1280666_-\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	2.11533e-96
NC_014010.1\|WP_013046058.1\|1270139_1270559_-\|DUF983-domain-containing-protein	gnl\|CDD\|368773	pfam06170, DUF983, Protein of unknown function (DUF983). This family consists of several bacterial proteins of unknown function.	4.4522e-28
NC_014010.1\|WP_013046056.1\|1266845_1269338_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223481	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism].	7.6347e-99
NC_014010.1\|WP_013046049.1\|1255743_1257042_+\|O-acetylhomoserine-aminocarboxypropyltransferase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0

>NC_014010.1|WP_013046058.1|1270139_1270559_-|DUF983-domain-containing-protein
MQTPSSSLSYGTALTRGLRRRCPQCGIGTLLCGYLKPVTECEACKSDFSHISADDGPAWVTILVLGHVVVPLMLYFGRDDSIPLWIACAILSVIMLIGVYVILPRAKGLFIALIWMTGATGEDMAPNSLDQSDETHNRQ
>NC_014010.1|WP_148212381.1|1269376_1269991_-|cupin-domain-containing-protein
MEKQPNASSSASSSASASAPLRSTGQIGSDIRALRRSRNWTLSDLADHLERSVGWLSQVERGVSEPALEDIRRIAGLFNLPVSFFFSSSSDDPESQFVVRGDSRRSMSDDTKGLVESLLSPDLGGAFEIVHSVFAPGARCPEPFVRQSEEAGYVIEGSLVLFIDGDRFELRAGDSFRFAGETVSWVNEGTVPAILIWVIAPPIY
>NC_014010.1|WP_013046056.1|1266845_1269338_-|FAD-dependent-oxidoreductase
MNEQQTKQTETLQSTTPLPKSARVVVIGGGAVGTSVLYHLAKLGWTDVVLLEKNELTSGSTWHAAGNCPNFVGSWTMMKIQSYSTRLYRELGALVDYPMNYHVTGAIRLAHSRQRMEEFRHVERMGRQMGVELQEMSNKDMQDVYPFLETHDLYGGQWDPYDGDIDPAQLTQALAKGARDLGATIIRFCPVTGVKWDKGEWTISTSQGDIQAEFVVNAAGYRANELGKMFGRDVPCVSLAHQYLITEAIPELTARDSKLPLLRDPDSSYYLRQEKDGLLLGPYEKNCRAHWLTDDDPMPDDFSFQLYNDDLDRLEWYIEDACERVPILGSGGITRVVNGPIPYTPDGLPLIGQMPGVPNAFEACVFTFGIVQGGGAGKLLADIIVEGEAETDSWAVDPRRFTDHVDTAYTAAKAIETYSHEYAMHFPQIQWPAGRKAKVSPLYERLEAAGAEFGAYGGWERADWFPKAGDERRPADSYDRQGWFDTVGAECRHVAEHAGILEMTGFSRYLVKGEGTRSWLSSLVTGNLPKPGRIGLIYFASPKGRVLSEMTATCLGEDEFMLMTGAGAYWHDFDLLFFALPAGGAISISDITRDFATLLVTGPKAPALLADVVDIDVASGAFPWLTHQRVKIAGVDTTAIRVSFAGEAGWELHCPMQDVVSVYDAIIAQGDAHQLGHFGMLALDSMRLEKGYRSWKSDLTSDYTMLESGLERWVNFGKDDFTGKTALMAEHQAGTKRRFVTLTIDDPADGEPFGEAVYLSTVLVNDVAAGLVVSAGYGHRVGASIAMAVIDADALVEGANLAVDVLGRIRDAHIVEGNVLYDPTNAKLKV
>NC_014010.1|WP_013046055.1|1264371_1266843_-|GcvT-family-protein
MAIPSHARAVIIGGGVIGCSIAYHLGKLGWKDVVLLERKQLTCGTTWHAAGLIAQLRATQNMTRLAKYSQELYFDLEQETGVATGFKRNGSITVALTDERMEELRRSAAMARAFGVEVDEILPDDVTKRYPGLSLDNVVGGVWLPKDGQADPVNITQALAKGARNFGVKIIQGVKVTAIDQADGRVTGVMTNEGPITADYVVNAGGMWAREIGAMAGVAVPLHACEHFYIVTEAIEGLTPNLPVLRVPDECAYYKEDAGKMLLGAFEPNSKPWGMNGIPEDFEFDSLPEDFDHFEPILERAVERLPALATAGIQTFFNGPESFTPDDRYILGEAPELENFFVAAGFNSVGIQSAGGAGMALAEWMDTGNAPMDLWDVDIRRMMPFQANRSYLKTRVSETLGLLYADHFPYRQVESARDVRQSPVHDRLKVAGACFGETSGWERANWFLPSSEIAKGTVPAYEYSWKRQNWFDFSASEHKAVREKVGMFDMSSFGKIKIIGKDAEAVLQTIAANDVAVAPGKIVYTQFLNEAGHIEADVTITRLSSDEFLIVTPAATVRRDLHWINGHIPDTAHAIAIDVTVSESVLVVMGPQARDFLQPLIPQSLANDDFAFGTMQDIEIGHGIARAHRVTYVGELGWEIYVSADMSNHVFDTIMARAQDHPLQLCGLHALDSCRIEKAFRHFGHDISNEDHVLEAGLGFAVKETKPASKFGGMIGADAVKAKRNDGLDQRLMQFRLKDPDPLLYHNEAILRDGEIVGFLTSGNYGHHLGGAIGLGYVGCAKAGETAESQLQSHYQIDVAGQMVDADVSFKPMYDPKAEQVRL
>NC_014010.1|WP_013046054.1|1262787_1264335_-|trimethylamine-methyltransferase-family-protein
MRQNRLIPHSNRRSGGREARRSVRAAPLADELRPVRPGLSGGTFKPLNDASVKAIEDTVYQILDEIGLSQAPESGVKYMTDAGAIEGDDGRIRFPRALVEDTLAKAARHITIHGQDEKHDMLLSGSRVHFGTAGAAVHVVDVQNNCYRESYLADIYDAARIVEQMDNIHFFQRPMVARDIPDPADLDFNTVYAAIKGTTKHVGCSFTEAPFMKPAIDMLHMVAGGEDKWRARPFVSNSNCFVVPPLRFATESCLVMEEAVHAGMPVLLLSAGQAGATAPASIAGAVAQALAEVIAGLVYVNAMVPGHPCIVGTWPFVSDLRTGAMSGGSGEQGLLTAACSQMLQHFDLPGGAASGMADAKMPDAQSGYEKGSTLVMAGLSGLNMVYEAAGMHASLLGFCLESLIIDNDMIGQCLRCVRGVEVNEATLGVAVMKDVCMGGAGHYLGHDQTIGLMQTEYVYPAIGDRSSPKEWEELGKPNLVEVASQRKDEILASFNPTHIPDALDAKIRSNFNVLL
>NC_014010.1|WP_013046053.1|1262129_1262741_-|LysE-family-translocator
MSLEFILTSLIIVLAPGTGVIYTIATGIARGTKPSVLAAFGCTLGIVPHLLAAIFGLAAILHTSAVIFNAFKFIGVVYLLYMAWMTFRETGALNINSDDQRHTRKQIITHAILINILNPKLSIFFLAFLPQFIQADDPYPIFHMLMLSIVFMLMTFVVFVGYGVFASSVRDHMTSQPRIMRLVRYVFASTFVALGARLAIAEK
>NC_014010.1|WP_013046052.1|1260247_1262020_-|acyl-CoA-dehydrogenase
MYKAPVDDMKFALAHLVGIDDIASLPGMDMVSDDLVEAVLEEAGKVAGDIIAPLNHDGDVLGATRHDDGSVSLPDGFGAAWQALATGGWIGFEADPDHGGQGLPLCLGSVVSEMWNSANMSFALCHLLTQGAIDALEQVASPEQKATFLPNLISGEWSGTMNLTEPQAGTDLGALRTMATPNGDHYLIKGQKIYITYGQHDMSKNIIHLVLARTPDAPDGVKGISLFAVPKILVNDDGSLGEANDVFCVSIEKKLGIKASPTAVLQYGDNNGAVGYLIGEENKGLEYMFLMMNNARFAVGMQGVAISERAYQQAVHYAHDRVQGTPIAGNKGDSIIHHPDVLRMLTIMKAEIEAMRALMVVGGACLDKSHGDENAAFWHERASLLIPVIKGWMTERSQALTSDAVQIHGGMGFIEETGVAQHYRDARILPIYEGTTAIQANDLVFRKTLRDGGAAVTSLFADIDTDMNAIITTQNDSTMALAKQVKQAVDTGRQALDSLLARANNPRDAAAAGVDFIMLIGYLTGGWQMARAAAAASKAEAEQAGNPDFMKAKQVSATAYMAYSLPEVGKLASKMMAGPDALAKMDVNWL
>NC_014010.1|WP_013046051.1|1257908_1260251_+|3-hydroxyacyl-CoA-dehydrogenase/enoyl-CoA-hydratase-family-protein
MTQSGFSKIAVIGAGTMGSGIAAQIANAGHDVLLLDLDARNPGDKTPAEMSIDRLLASDPPQLMDRKFINRISTGTIDGDLEKLADYDWVIEAVVERLDIKKALYKRLDDIIPAHCIISSNTSTIPIRLLVEDMPTAFKKRFAITHYFNPVRYMRLLELVRGSETEARIIEKLADFNDRVLGKGVVRCADTPGFLGNRVGVFALQVGIDEAFKCGLSVEDADALMGRPMGIPKTGVFGLYDLIGIDLMVDVVASLASILPENDAFHDVGGTNPMIDAMIAEGYTGDKGKGGFYVTDDNDNIFVRPLGGAELLPLKPVKTTLPVSAIKAAEATAQRAEPLDMILAGDDIYAHFCRRVLGRVLAYAASLIPAVTSNPQDIDDAMKLGFNWTRGPFELIDAIGYERMQSLMSEAGVTVPEVLKTESPFYQLRGSSLMVRDASQKYNPVMLPTGVIRFHMTRRSMTPIISNNSASLFVLDGFAQSVNDLRLIEFHSKANALNDESMEIVAAAAEDHGSGIIVHNDAQHFSAGVDLNAFRAFIEAEDWDGIDKFLARFQDAVCALKYTPVPVIGAPSGLAVGGGFEVLAHCDKLAVHSNSVLGLVEAGVGVVPGGGGIKETFLRWQEAGKNVDDAAWKTWMNIGYGATGSSPDLSAKMQYFRPDHDAAVMNRDRLLTKAISMIGKMQDSYRTPDIPSSKPADANLADKMASFMQDGIDRGDFMPHDKTVAMAIASVMLQRAGDGDEIDEQGLYDREREAFISLAKTKETYLRISSMLDHGAPVRN
>NC_014010.1|WP_013046050.1|1257066_1257864_+|alpha/beta-hydrolase
MKHNLHGTQIHLATGGRDFDPAGDVLVMLHGSGQNHLSWILQSRHFAHHGYSVLVPDFPGHGLSEGAPLETIEDMAAWVIDLLNSLGVKTACLVGHSQGCLVTIEAAASHPDRITHLVLIAGAMAIPVNEVLLDMSDQALEKAIAMLTSFGHGPDAHKYDHSLPGHSFIDFGKRVMAINNRAALKADFTACNKYSHGSTAAASIRQPTLCLLAQKDRNTPLKFGKMMAEAINDCTLEIINNAGHMLPVERPLAVNAAMRDFLGNR
>NC_014010.1|WP_013046049.1|1255743_1257042_+|O-acetylhomoserine-aminocarboxypropyltransferase
MSGDYKFDTLSLHAGHVPDETYGSRAVPIHQTTSYVFKDSDHAAALYNMEIGGHLYSRISNPTVAVLEQRVAALDGAVAATATASGMAALSTTLLTICSQGDHIVSSSRMYGANINLMENTLPRFGITTSFVDPCDPDAIKAAIQDNTKLIFGEVIGNPGLDIMDVEKVAKIADEAGIPLILDCTFNTPWLLKPIDLGANIIIHSLTKWMGGHGIAIGGIAVDAGNFDWGRNDKFPTIAGPHYSMNGINFYEEFGPAAFTARFRAEGMYNLGPSLSPTNAFHILQGLETLPLRMQRHMENTEKMLTFLSDHEGVAWVRHPNLPDHPGHALAKKMLPRGAGSIIVFGLKGGREAGRAFIESVDLASHLANVGDAKTLVIHPASTTHSHISAEAMIEGGLSDDMIRLSVGLEDIDDIIADFKQGLKAASRAVKA
>NC_014010.1|WP_013046060.1|1273625_1273952_-|TraR/DksA-C4-type-zinc-finger-protein
MDVTVFRKLILAEIAELEGLSKSSKSGRDPVTLDQQSVGRLSRMDAMQQQSMDLAREERRQQRLIILAAALQRIEADDYGYCLGCDEPIKPARLQIDPAVTTCVSCAV
>NC_014010.1|WP_013046061.1|1274128_1275022_+|DMT-family-transporter
MLARCLPWIFMLCMGMLWGGSFSVAKIAINAGGTPMGVAFWQAVIASALLLTYTLLRRRPMSLGVEQLRFYIVVGLMGIAIPGVCFYLATPHLPAGILAITVTLVPILTYCLALSLRLEQISWRRVTGIIFGACAILLLVAPESSLPNRSDVPWLLLACVSPLCLAAQNILLARWHIAGLGPIRTACGMNLAAAVILLPVTAVNGDLFLPAFPFGTIEWGVVGLALIATIAYTMFVMTIDRAGPLFASQVGYVVTLAGVFWGMLLFGESHSAWVWVSLATMLAGLALVTPRKTGETG
>NC_014010.1|WP_013046062.1|1275049_1275259_-|hypothetical-protein
MEQINPHALIAIIVAGIGYGIYIGAESLEKRYAIKEQISIMPKFLKHIGSALMVVPIVLFVALWAFAKF
>NC_014010.1|WP_013046063.1|1275292_1276348_-|dipeptidase
MNKAEIPIFDGHNDVLFRLFQAGGRDHATSFVTGRDGHIDLIKATSGGLAGGFFAIYVPSPVDLALKFELMTQDSYDLPLPPAVDLSDALPIALQQAVILVELETLGALKICTSVNDIRSCMQSGIMAAIMHMEGAEAIDADLYNLDIFYRAGLRSLGLVWSRPTIFGEGVPFRFPSTGDIGGGLSEHGIRLVKRCDELGIMLDMSHLNEAGFWDIAKHSTKPLVATHSNSHVLSPHARNLTDRQLAAIAESDGMVGLNFAVAFLRADGKMLADVHYDVLLRHLDHLIEHLGEDRVGLGSDFDGAVIPEDMGDCAGLTSFRNAMYAHGYNDALMTKLCHANWMRLLAHNMG
>NC_014010.1|WP_041860800.1|1276548_1277583_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MADLNLTNIQKSYDKTEVITNLNLSIKSGEFVVFVGPSGCGKSTLLRMIAGLEDISGGTLTINDEIVNDVVPAERGVAMVFQSYALYPHMTVFDNMAFGLRQSKTPKPEINRRVNGAAAILQITDYLKRLPKHLSGGQRQRVAIGRAIVRDPKVFLFDEPLSNLDAALRVQTRIEIAKLHNDLDATMVYVTHDQVEAMTLADRIVVLNAGNIEQVGTPLELYNAPANKFVAGFIGSPKMNFIPTGHKTLKSASHNAAEIGIRPEHLVLTTKAKAKLYGSLRHIEQLGEYALAYIDLGDGIEITAKLEGESGLQNGAKMPLTFDTSKLHHFDANGVSLAAGTASA
>NC_014010.1|WP_013046065.1|1277582_1279577_+|beta-galactosidase
MSSASESHAQFPALGVCYYPEHWPEDMWEADAKAMVAAGISWVRIAEFAWSRIEPQRDNFTWDWLDRAVKTLGDAGLKITMCTPTATPPKWLIDEMPDMIAIEADGTPRRFGSRRHYCFSHLGYRAESRRITQAIAARYGQMDAVAAWQTDNEYGCHDTIYSYSAAAKAGFQAWLADHYGTVAELNKAWGNVFWSMEVGDFSEVELPNLTVTEANPAHNLDFRRYSTAAVVTFNREQTDILRRLSPDRPIAHNYMGEFAQFDHRPVAADLDIASWDSYPLGMLQNMQSYPSANTERDQKTYADCMRTGEPDFQAFHHDLYRGMGRLWIMEQQPGPVNWAKYNPVPRAGAVRMWSWEAIAHGAELVSYFRWRQAPFAQEQMHAGLMLRNNEPAVGLAEAKQFASELDLLDGADTIQAPIALIHDYEADWISALDGQSDDFAYLPLMLDFYRAIRRHGGSVDIIGPHDDISGYALVIVPCLMHVPDSLAHQIEHFDGQLLIGPRTGAKTIDFQLPKNLAPGPLASVTGVTITRVDAVPASQTISVSDDEILGNFKIWREHVTAQGTVLAMGEDGYPAVIKSNRTSYLAGWPDAALANNVISQAMQQAGITTHEMPGYLRVRQRGNKLIFVNYGDQMMTIPNSFSGTFILGMQDVPPAGVSIMHVDS
>NC_014010.1|WP_013046066.1|1279571_1280666_-|galactokinase
MSSALFESHFSAVPEAVAIGHGRANLIGEHTDYNEGLVMPVLLRHHTVVALSPRQDNMICGISDRFDALDRLVDSPCDGSWLDFVTGALTMARLNGFAVGHDGKCGINIAVSSQVPAGAGLSSSAAFEIALLRAIGALTPARFDKLSPADLARMGQQIEHDFVGTACGIMDQMVAAVAPVGQAMLFDVRSMNTRCIPLFPGYDFLIIHSGADRKLSEGAYNERLAQCQKAASEMGVASLRDADLISCDRLADPLLKKRARHVISENIRVQKAAIALEAGKADEFGQLMDECHTSLDADFDVSSPILNDLVANLKSAGAIGARLTGAGFGGCVVALCAREQGDHILETFRSPNPNAWLVDRIEGL
>NC_014010.1|WP_013046067.1|1280658_1281717_-|galactose-1-phosphate-uridylyltransferase
MTDFHTKYVDRGHGRSLWLFSETARDYELLESLPAVQGADAHMRWHPLLREWVCHASTRQGRTFLPDAADCPLCPAVKGGKLTDMPATDYEIAIFTNRFSALSAEAGTPPELGVETAPGIGFCDVVCYSADHHSSFATIGVDRISLLVAAIGHRWDTLMQDERVQYVLPFENRGREIGVTLDHPHGQIYALSHIPALIAREADSFVHSNPLGDIVAHINPALILAQNECGIVMVPEWGRYPFETWVVPHRQMASPAEFTADERVQFAALMHDAVSRLDAVHGMPMPYTLGWHTAPRGMQDTFHFYCAFRPLRRSADKLKYLASVEQITGTFLVDIPPEQAAELLAGKAKLNV
>NC_014010.1|WP_013046068.1|1281716_1283045_-|alpha-glucosidase/alpha-galactosidase
MIKITMIGAGSTVFMQNILTDVLLEDCFKNCHVALQDIDEKRLKTSQLVAEKISATVNAKPTITATTDRRTALQGADFVIIMIQVGGYKPSTVIDFEIPATYGLTQTIADTLGVGGVMRGLRTVPVLAEIARDMMDICPDALMLQYVNPMAINCLALSRMVPDLRYVGLCHSVQGTAIDLARDLGESIDDIEFECAGINHVAFYTKFAKRHADGRVEDLYPRLHKLIDGRNYGANYDGCTNHVRYEMLRRLGYFVTESSEHFAEYTPWFIKNDQPELIKQFDIPINEYIRRCEDQIEKWDAQEQALLSDSPIICEKSVEYAARIINAVVNDVPDTINGNVLNDGLIGNLPANACVEVPCIVDKRGITPQSVDDLPPHLAAIMQSSINVQSLTVEAIITGKKEHVYHAVMMDPHTGAELNLDQIWQMVDELLDAHAGWLPALR
>NC_014010.1|WP_013046069.1|1283063_1283915_-|carbohydrate-ABC-transporter-permease
MFPTPIEKTHPTNQMLYKIALPVALLIWLVPLLGVVMTAVRGSADITSGNLWGVPSEWQAIQNLTDVFTNTPMFMFIMNSFKITIPTVIGAVALSCMTGFALAIYRFKGNLLIFFLFVAGNFIPFQILMIPVRDLTFQIGLYDTVTGLAMFHIAFQTGFCTLFMRNFIRALPYELVEAARIDGASEFKIFWAVVLPLIRPAIAALCVLVFTFIWNDYFWATVLIQGQHAMPVTAGLKSLNGQWISAYHLISAGSIMAALPPVIIFFLMQKHFIAGLTFGASKG

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Crispr_ID: NC_014010_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014010_3

2753369-2753527

orTypeII

Consensus_repeat	Method
AGTATAGCACTCTGGTGATTGAGAGCC	CRISPRCasFinder

2 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_014010_3

>merge|NC_014010|3|2753369-2753527|CRISPRCasFinder
AGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACGTCTTCGGTCTCGTCGAACCTTTCGTAGGAAGTATAGCACTCTGGTGATTGAGAGCCTAGAGCAACGCTATAAGTCAACACAACAAATCGATGTTGAGTATAGCACTCTGGTGATTGAGAGCC

>NC_014010|3|3|2753369-2753527|CRISPRCasFinder
AGTATAGCACTCTGGTGATTGAGAGCC	TAGAGCAACGTCTTCGGTCTCGTCGAACCTTTCGTAGGA
AGTATAGCACTCTGGTGATTGAGAGCC	TAGAGCAACGCTATAAGTCAACACAACAAATCGATGTTG
AGTATAGCACTCTGGTGATTGAGAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014010.1\|WP_013047415.1\|2753020_2753341_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_014010.1\|WP_013047413.1\|2748991_2752099_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NC_014010.1\|WP_013047408.1\|2743908_2745042_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|226985
NC_014010.1\|WP_148212432.1\|2740627_2741383_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NC_014010.1\|WP_013047411.1\|2747290_2748385_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NC_014010.1\|WP_013047409.1\|2745207_2746620_+\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NC_014010.1\|WP_013047405.1\|2741705_2742422_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_014010.1\|WP_013047410.1\|2746626_2747085_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_014010.1\|WP_013047414.1\|2752115_2753027_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_014010.1\|WP_049757560.1\|2742607_2743831_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NC_014010.1\|WP_013047415.1\|2753020_2753341_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.01291e-23
NC_014010.1\|WP_013047413.1\|2748991_2752099_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	2.13796e-83
NC_014010.1\|WP_013047408.1\|2743908_2745042_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|226985	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].	5.96825e-49
NC_014010.1\|WP_148212432.1\|2740627_2741383_-\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	5.05791e-57
NC_014010.1\|WP_013047411.1\|2747290_2748385_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NC_014010.1\|WP_013047409.1\|2745207_2746620_+\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	6.2757e-166
NC_014010.1\|WP_013047405.1\|2741705_2742422_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.93661e-17
NC_014010.1\|WP_013047410.1\|2746626_2747085_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.36708e-43
NC_014010.1\|WP_013047414.1\|2752115_2753027_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.97633e-77
NC_014010.1\|WP_049757560.1\|2742607_2743831_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.19935e-07

>NC_014010.1|WP_013047415.1|2753020_2753341_+|CRISPR-associated-endonuclease-Cas2
MLSGYRLLWIMTLFDLPVVTKAERKRATVFRNKLLDLGFEMVQYSVYMKHVAGKEQAEAIQVKIKDAVPEYGNVKLLLITDRQFGNILHLGRHSKRPINADQLALF
>NC_014010.1|WP_013047414.1|2752115_2753027_+|type-II-CRISPR-associated-endonuclease-Cas1
MIEISGQPRHISVRRGAIIVSDNETELGQIDLDGVLSVIVTSRGATVTTPMITEAAARNIPIIICNDRFQPVSLSLPLVQHSDQTRRFETQALAKKGIKNRIWQKIIKGKVKNQATLLVLYQSASVERLNRLHTLIKSGDPQNIEAQAAQVYWPALFGRDFRRDRHKGDVNALLNYGYAIIRSAMVSAVLSAGLHPTFGMFHKNKNNPLCLVDDLMEPYRPLVDQLVKRLVERGHSNVTTEVKRCLASIVTSDQAVVGATSPLFQHMSQLSYSLWENLDGQKTTMPMPQLIPELEIEAMVSEC
>NC_014010.1|WP_013047413.1|2748991_2752099_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MRRLGLDLGTNSIGWCLLDLGDDGEPVSIFRTGARIFSDGRDPKSLGSLKATRREARLTRRRRDRFIQRQKNLINALVKYGLMPADEIQRQALAYKDPYPIRKKALDEAIDPYEMGRAIFHINQRRGFKSNRKSADNEAGVVKQSIADLEMKLGEAGARTIGEFLADRQATNDTVRARRLSGTNALYEFYPDRYMLEQEFDTLWAKQAAFNPSLYIEAARERLKEIVFFQRKLKPQEVGRCIFLSDEDRISKALPSFQRFRIYQELSNLAWIDHDGVAHRITASLALRDHLFDELEHKKKLTFKAMRAILRKQGVVDYPVGFNLESDNRDHLIGNLTSCIMRDAKKMIGSAWDRLDEEEQDSFILMLQDDQKGDDEVRSILTQQYGLSDDVAEDCLDVRLPDGHGSLSKKAIDRILPVLRDQGLIYYDAVKEAGLGEANLYDPYAALSDKLDYYGKALAGHVMGASGKFEDSDEKRYGTISNPTVHIALNQVRAVVNELIRLHGKPDEVVIEIGRDLPMGADGKRELERFQKEGRAKNERARDELKKLGHIDSRESRQKFQLWEQLAKEPVDRCCPFTGKMMSISDLFSDKVEIEHLLPFSLTLDDSMANKTVCFRQANRDKGNRAPFDAFGNSPAGYDWQEILGRSQNLPYAKRWRFLPDAMKRFEADGGFLERQLNDTRYISRYTTEYISTIIPKNKIWVVTGRLTSLLRGFWGLNSILRGHNTDDGTPAKKSRDDHRHHAIDAIVVGMTSRGLLQKVSKAARRSEDLDLTRLFEGRIDPWDGFRDEVKKHIDAIIVSHRPRKKSQGALHNDTAYGIVEHAENGASTVVHRVPITSLGKQSDIEKVRDPLIKSALLNETAGLSGKSFENAVQKWCADNSIKSLRIVETVSIIPITDKEGVAYKGYKGDGNAYMDIYQDPTSSKWKGEIVSRFDANQKGFIPSWQSQFPTARLIMRLRINDLLKLQDGEIEEIYRVQRLSGSKILMAPHTEANVDARDRDKNDTFKLTSKSPGKLQSASARKVHISPTGLIREG
>NC_014010.1|WP_013047411.1|2747290_2748385_+|alanine-dehydrogenase
MLVGVPKEIKTREFRVGLVPSSVAELVGRGHKVLVETNAGAGIGAGDDAYRAVGAEIAATAADVFAKAEMIVKVKEPQPSEWVQLSSDQILFTYLHLAADAPQAYGLVDSGCTAIAYETITDDQGGLPLLAPMSEVAGRLAVVEGASHLKANAGGRGILISGVPGTAPAEVVIIGGGVVGVNAAKMAVGLGARVTVFDRSVPRLRYLSDIFGNAISTRYSSNAVLAEAVKQADMVIGAVLIPGASAPQLITRAQLSGMKPGAVLVDVAIDQGGCFETSKPTTHDDPTYIIDDIVHYCVANMPGSVPRTSSEALNNATLPHVLALADKGVAALDDDPHLMNGLNVRNGEIVYQAVLDALGSRSAA
>NC_014010.1|WP_013047410.1|2746626_2747085_-|Lrp/AsnC-family-transcriptional-regulator
MDKIDLTILGALQNNARISNVELAADVGLSPSACLRRVSQLEKSGVIAGYHAALDAAKLGHDVLVLMQITLHGQSADMMAEFEAEVAKIPQVLACFLIAGENDYILRVSARDVADFGRIHSEYLSALPHVLRMESSFILREVMNRGMQASLA
>NC_014010.1|WP_013047409.1|2745207_2746620_+|YdiU-family-protein
MTNSAFTFDPQTIHTALDERFYRVVKPATFPDHIIRYRNQDAASSIGLADLSDTAWCDHFGRFVPFEGSFQAPLALCYHGHQFGHYNPELGDGRGFLFAQARAADGRLLDMGTKGSGTTPFSRSADGRLTLKGAVREILATEMLQALGVTTSKTLSVIETGEALTRHDEPSPTRSAVMVRLSHSHIRIGSFQRLSFMDDADGIETLTRHVVRHYYADDPALDPAADFDQLVPLFLEKVATSIATTAGQWLAAGFVHGVLNTDNFNITGESFDYGPWRFLPHFDPGLVAAYFDETGRYAYGRQADAALWAVCRLADCFVRFVAKDVIEDRLRGFFADMEASLARQLQWRLGVTLDDQTQAPTLCRHLFTAAKASKLGFDQIFHDLYGGSDRVGSYATDDWKPVLDTLAASTPIHVMAHPHFARADAVSMTIDEVEAIWAPIAEADDWSALTRKLDDIKSLRAALAGADTST
>NC_014010.1|WP_013047408.1|2743908_2745042_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MLDLSNVSAPIERANGLPNACYIDEQIYQHEQDTLFRNNWAAIGFGKDVASPGMVKPLSFLDIPMIMVRTQNGDINVFQNVCRHRGMILVDAPQQLRGPITCPYHAWSYDLDGNLRKTPHIGGPNVDTLDSVQHCDYPLNKVRSHVWNDIVFVNVGGDAPAFTTQMAALIDRWHEFNQPLYHGGADSSLSFDLACNWKLAVENYCEAYHLPFIHPALNSYSRLEDHYNILDHDNYAGQGTTVYAPQVSDTGARFPTFDKLSSKWDTGAEYVALFPNVLLGVHKDHYFNILLTPDGTGHTHEQIELYYTDPLALSDDYAEMRATNTRMWQTVFAEDISVVEGMQKGRKAPAYDGGKFSAVMDESTYHFHKWVARELSV
>NC_014010.1|WP_049757560.1|2742607_2743831_+|MFS-transporter
MVFAAAMPISFLSWSLLLNNFTIEVASFTGREIGILQSLREVPGFLSFLVVYILLVIAEQRLAFLSLIILGGGVAITGYFPTAIGLYITTIISSIGFHYYETCNQSLALQWLDKKTAPAVLGRIYGIGATAQVLTLGSIFIVYFIVSGQVSWSFLADSTGLVTSNDTYNMIYVATGMITAIMALAAWIIFPHFTEKVRQTRKIVLRQRYWLYYGLTFLAGARRQIFLVFASFLMVEKFEYSLIQVTALFLLNAIFNIWFAPIVGRLIGRIGERAALVFEYVGLVCVFVAYAFVENGTIAAGLYVVDHMFFAFAIAIKTYFQKIGDPADMASTASVAFTINHIAAVVVPVSFGFLWLTMPEAVFLAGAGMAALSLILSLNVPRHPDAGNEVVYGPRGQALSPASQPAE
>NC_014010.1|WP_013047405.1|2741705_2742422_+|ParA-family-protein
MTDQTSQVGKAVFVGNIKGGVGKSTIAVYLTDYLRQRFAERSIMMIDTDPQGSAFEMLEPHSNGSDIKFLPVGDRYDGVNVTTLDGILRRMLAEDNSLTIVDTGAGKMGDIWQMAMLCNTMIVPTSMSWTDLRPTIDFIKEIDERKADFGRITPHVIVIPNRTSPSQRNFNVLSEALQEVNAIMAPPISDLSAARSRSASFGGIKAVEGSRFHTEIERLGEFIVDYVVSGELDRIYQQ
>NC_014010.1|WP_148212432.1|2740627_2741383_-|ABC-transporter-permease
MPVLNFVAFSGFISQIFATAILLLCSGFRRGQPVRLRHVVSDIRSSGIDALPVVILMAATIGIMLSIQGVHSLRIFGAESQVTFGLALSIPREFAPLITGIIVAGRSGSQLTSRVGSMQLNGELDALKVMGISPIRFVVAPALVALLFALPILVAIANVSAFWTASLYIDAVLGIAPAAYWADILAVVTITDLIHGFGKAIIFAVLIALIGICKGLRVSGGADRLGAATTSSVVSCIAAIIAADAMFALIL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_014010_1	1.20\|1329\|31\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1329-1359	31	NC_014010.1	1824829-1824859	1	0.968

1. spacer 1.20|1329|31|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to position: 1824829-1824859, mismatch: 1, identity: 0.968

tcaataggtactgctggttacgaagcgtcaa	CRISPR spacer
tcaatgggtactgctggttacgaagcgtcaa	Protospacer
*****.*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	MN693214	Marine virus AFVG_25M479, complete genome	33972-34001	4	0.867
NC_014010_1	1.24\|1594\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1594-1623	30	KT351738	Uncultured bacterium plasmid Drgb7, complete sequence	21570-21599	4	0.867
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	NZ_LR026982	Rhodoplanes piscinae isolate Rhod_plasmid plasmid 1, complete sequence	43236-43265	5	0.833
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	LC553736	Salmonella phage SAP012 DNA, complete sequence	16564-16593	6	0.8
NC_014010_1	1.11\|735\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	735-764	30	MF042360	Pseudomonas phage Phabio, complete genome	236605-236634	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	NC_006552	Pseudomonas phage F116, complete genome	29135-29164	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	KC900378	Pseudomonas phage LKA5, complete genome	28827-28856	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MT118301	Pseudomonas phage Epa33, complete genome	27144-27173	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	AY625898	Pseudomonas aeruginosa phage F116, complete genome	29135-29164	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	NC_042342	Pseudomonas virus H66, complete genome	28884-28913	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	LT603684	Pseudomonas phage phiC725A genome assembly	28458-28487	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511042	Pseudomonas phage CF126, partial genome	49793-49822	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511040	Pseudomonas phage CF63, partial genome	35008-35037	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511051	Pseudomonas phage BR181, partial genome	33716-33745	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511041	Pseudomonas phage CF69, partial genome	49821-49850	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MF490237	Pseudomonas phage vB_PaeP_E220, complete genome	44662-44691	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511049	Pseudomonas phage BR326, partial genome	33716-33745	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511045	Pseudomonas phage BR208, partial genome	33716-33745	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511044	Pseudomonas phage BR197, partial genome	49821-49850	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511050	Pseudomonas phage BR150, partial genome	49749-49778	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511048	Pseudomonas phage BR320, partial genome	49749-49778	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511046	Pseudomonas phage BR313, partial genome	33716-33745	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	KM389216	UNVERIFIED: Pseudomonas phage F_ET605sp/Pa1651 clone contig00001 genomic sequence	38094-38123	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511047	Pseudomonas phage BR319, partial genome	49925-49954	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511043	Pseudomonas phage BR228, partial genome	45870-45899	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	KM389247	UNVERIFIED: Pseudomonas phage JBD90 clone contig00001 genomic sequence	19678-19707	6	0.8
NC_014010_1	1.12\|801\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	801-830	30	MK511039	Pseudomonas phage CF24, partial genome	49821-49850	6	0.8
NC_014010_1	1.16\|1065\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1065-1094	30	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	175362-175391	6	0.8
NC_014010_1	1.16\|1065\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1065-1094	30	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	18373-18402	6	0.8
NC_014010_1	1.1\|76\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	76-105	30	MN693712	Marine virus AFVG_250M462, complete genome	32665-32694	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	411742-411771	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1747523-1747552	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1891758-1891787	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	2102588-2102617	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	749551-749580	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1605572-1605601	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1640868-1640897	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1716441-1716470	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1747543-1747572	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1627350-1627379	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1641180-1641209	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1716441-1716470	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1640868-1640897	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1627996-1628025	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1640071-1640100	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1716441-1716470	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1716441-1716470	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1716441-1716470	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	1627372-1627401	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1713756-1713785	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	1627372-1627401	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1641179-1641208	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1727415-1727444	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	1627372-1627401	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	1627372-1627401	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1716444-1716473	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	283612-283641	7	0.767
NC_014010_1	1.2\|142\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	142-171	30	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	283612-283641	7	0.767
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	MN693642	Marine virus AFVG_250M194, complete genome	2150-2179	7	0.767
NC_014010_1	1.4\|274\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	274-303	30	MH616795	Microviridae sp. isolate ctbh757, complete genome	3349-3378	7	0.767
NC_014010_1	1.8\|538\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	538-567	30	NC_009929	Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence	31114-31143	7	0.767
NC_014010_1	1.10\|669\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	669-698	30	NC_042014	Arthrobacter phage Piccoletto, complete genome	39196-39225	7	0.767
NC_014010_1	1.26\|1727\|30\|NC_014010\|CRISPRCasFinder,CRT	1727-1756	30	MG189906	Stenotrophomonas phage vB_SmaS_DLP_5, complete genome	80075-80104	7	0.767
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	NC_005916	Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence	598-627	8	0.733
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	NC_019018	Mycobacterium marinum DL240490 plasmid pMUM003, complete sequence	53847-53876	8	0.733
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	NC_011355	Mycobacterium liflandii 128FXT plasmid pMUM002, complete sequence	598-627	8	0.733
NC_014010_1	1.3\|208\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	208-237	30	NZ_AP017625	Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 plasmid pShTP, complete sequence	597-626	8	0.733
NC_014010_1	1.6\|406\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	406-435	30	MN087708	Edwardsiella phage vB_EtaM-IME523, complete genome	18234-18263	8	0.733
NC_014010_1	1.10\|669\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	669-698	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	1565063-1565092	8	0.733
NC_014010_1	1.22\|1462\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1462-1491	30	NZ_CP015351	Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence	85910-85939	8	0.733
NC_014010_1	1.24\|1594\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1594-1623	30	CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	302434-302463	8	0.733
NC_014010_1	1.13\|867\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	867-896	30	MG592415	Vibrio phage 1.031.O._10N.261.46.F8, partial genome	38986-39015	9	0.7
NC_014010_1	1.18\|1197\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1197-1226	30	MK448355	Streptococcus satellite phage Javan2, complete genome	9010-9039	9	0.7
NC_014010_1	1.23\|1528\|30\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1528-1557	30	MN703409	Arthrobacter phage LittleTokyo, complete genome	25280-25309	9	0.7
NC_014010_1	1.25\|1660\|31\|NC_014010\|PILER-CR,CRISPRCasFinder,CRT	1660-1690	31	MN184886	Erwinia phage pEp_SNUABM_08, complete genome	34730-34760	9	0.71

1. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MN693214 (Marine virus AFVG_25M479, complete genome) position: , mismatch: 4, identity: 0.867

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
gtaacgcaatcgtgccgcaagtcgcggcag	Protospacer
******* **.*****************.

2. spacer 1.24|1594|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to KT351738 (Uncultured bacterium plasmid Drgb7, complete sequence) position: , mismatch: 4, identity: 0.867

tggattgagcttgatcctgcgcgcgatatc	CRISPR spacer
cgtattgagcttgatcttgcccgcgatatc	Protospacer
.* *************.*** *********

3. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR026982 (Rhodoplanes piscinae isolate Rhod_plasmid plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
gcaacgccatcgtcccgcaagtcgcggcag	Protospacer
*.********.** **************.

4. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to LC553736 (Salmonella phage SAP012 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
gaaacgctattgtgcctcaagtcgcggtca	Protospacer
* *****.******** **********.

5. spacer 1.11|735|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MF042360 (Pseudomonas phage Phabio, complete genome) position: , mismatch: 6, identity: 0.8

ataaaatcgcgtgacgaaaagaaaacacta	CRISPR spacer
tttcaatcgcttgacgaaaagaaaacccaa	Protospacer
 *  ****** *************** * *

6. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NC_006552 (Pseudomonas phage F116, complete genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

7. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to KC900378 (Pseudomonas phage LKA5, complete genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

8. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MT118301 (Pseudomonas phage Epa33, complete genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

9. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to AY625898 (Pseudomonas aeruginosa phage F116, complete genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

10. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NC_042342 (Pseudomonas virus H66, complete genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

11. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to LT603684 (Pseudomonas phage phiC725A genome assembly) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

12. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511042 (Pseudomonas phage CF126, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

13. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511040 (Pseudomonas phage CF63, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

14. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511051 (Pseudomonas phage BR181, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

15. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511041 (Pseudomonas phage CF69, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

16. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MF490237 (Pseudomonas phage vB_PaeP_E220, complete genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

17. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511049 (Pseudomonas phage BR326, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

18. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511045 (Pseudomonas phage BR208, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

19. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511044 (Pseudomonas phage BR197, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

20. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511050 (Pseudomonas phage BR150, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

21. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511048 (Pseudomonas phage BR320, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

22. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511046 (Pseudomonas phage BR313, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

23. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to KM389216 (UNVERIFIED: Pseudomonas phage F_ET605sp/Pa1651 clone contig00001 genomic sequence) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

24. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511047 (Pseudomonas phage BR319, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

25. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511043 (Pseudomonas phage BR228, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

26. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to KM389247 (UNVERIFIED: Pseudomonas phage JBD90 clone contig00001 genomic sequence) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

27. spacer 1.12|801|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK511039 (Pseudomonas phage CF24, partial genome) position: , mismatch: 6, identity: 0.8

tgaaagttggtgtgcctgccgtccttggcc	CRISPR spacer
tagccgatggtgtgcttgccgtccttggcc	Protospacer
*..  * ********.**************

28. spacer 1.16|1065|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 6, identity: 0.8

tcaacagctttagaccatttatcaccgatt	CRISPR spacer
caaacagcttgagaccattcatcaccgcat	Protospacer
. ******** ********.*******  *

29. spacer 1.16|1065|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 6, identity: 0.8

tcaacagctttagaccatttatcaccgatt	CRISPR spacer
caaacagcttgagaccattcatcaccgcat	Protospacer
. ******** ********.*******  *

30. spacer 1.1|76|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MN693712 (Marine virus AFVG_250M462, complete genome) position: , mismatch: 7, identity: 0.767

cgtggtggtctcaagcagataaacccttcc	CRISPR spacer
ccgagtggtctaaagcagataaaccatatc	Protospacer
*  .******* ************* * .*

31. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

32. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

33. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

34. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

35. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

36. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

37. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

38. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

39. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

40. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

41. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

42. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

43. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

44. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

45. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

46. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

47. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

48. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

49. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

50. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

51. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

52. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

53. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

54. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

55. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

56. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

57. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

58. spacer 1.2|142|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaccgcttgatatcgcatcaccgcacggc	CRISPR spacer
tggccgcttgatttcgcatcaccggcttgg	Protospacer
**.********* ***********  . *

59. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MN693642 (Marine virus AFVG_250M194, complete genome) position: , mismatch: 7, identity: 0.767

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
ggaacgccattgtgccacaagtagctgaat	Protospacer
* **************.***** ** * ..

60. spacer 1.4|274|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MH616795 (Microviridae sp. isolate ctbh757, complete genome) position: , mismatch: 7, identity: 0.767

atgagcagaattcatttatcactttgactt	CRISPR spacer
attctgctaattcgtttatcactttgactt	Protospacer
**      *****.****************

61. spacer 1.8|538|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NC_009929 (Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence) position: , mismatch: 7, identity: 0.767

tatgccaaggcactatcggctgaggcacaa	CRISPR spacer
tgagccaagccaatatcggctgaggcttca	Protospacer
*. ****** ** ************* . *

62. spacer 1.10|669|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NC_042014 (Arthrobacter phage Piccoletto, complete genome) position: , mismatch: 7, identity: 0.767

tatggcggcgggcggcgttcaactgacagc	CRISPR spacer
tgcggcggcgggcgccgttcagctgaaacg	Protospacer
*..*********** ******.**** *

63. spacer 1.26|1727|30|NC_014010|CRISPRCasFinder,CRT matches to MG189906 (Stenotrophomonas phage vB_SmaS_DLP_5, complete genome) position: , mismatch: 7, identity: 0.767

cgatccctcgatgatgggttgaccgccgaa	CRISPR spacer
catcacttcgatgatgtggtgaccgccgaa	Protospacer
*. . *.********* * ***********

64. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NC_005916 (Mycobacterium ulcerans Agy99 plasmid pMUM001, complete sequence) position: , mismatch: 8, identity: 0.733

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
tgctcgccattgagccgcaagtcgccggcc	Protospacer
    ******** ************ *  *

65. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NC_019018 (Mycobacterium marinum DL240490 plasmid pMUM003, complete sequence) position: , mismatch: 8, identity: 0.733

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
tactcgccattgagccgcaagtcgccggcc	Protospacer
    ******** ************ *  *

66. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NC_011355 (Mycobacterium liflandii 128FXT plasmid pMUM002, complete sequence) position: , mismatch: 8, identity: 0.733

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
tactcgccattgagccgcaagtcgccgacc	Protospacer
    ******** ************ *  *

67. spacer 1.3|208|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017625 (Mycobacterium ulcerans subsp. shinshuense strain ATCC 33728 plasmid pShTP, complete sequence) position: , mismatch: 8, identity: 0.733

gtaacgccattgtgccgcaagtcgcggcgc	CRISPR spacer
tgctcgccattgagccgcaagtcgccggcc	Protospacer
    ******** ************ *  *

68. spacer 1.6|406|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MN087708 (Edwardsiella phage vB_EtaM-IME523, complete genome) position: , mismatch: 8, identity: 0.733

ggtaatgatgtccacatgtccaactgcgtc	CRISPR spacer
ggtaaagatatccacatgtccaaacggcaa	Protospacer
***** ***.************* .*

69. spacer 1.10|669|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tatggcggcgggcggcgttcaactgacagc	CRISPR spacer
gttgagcaagggcggcgttcaactggcagc	Protospacer
  **.  . ****************.****

70. spacer 1.22|1462|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015351 (Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence) position: , mismatch: 8, identity: 0.733

cggtgatcctaaaaatccagctcgtttggg	CRISPR spacer
agcggatcttaaaaatccagctcttttttt	Protospacer
 *  ****.************** ***

71. spacer 1.24|1594|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 8, identity: 0.733

tggattgagcttgatcctgcgcgcgatatc	CRISPR spacer
ccgcatgagcttgatcctgcgcgccatgct	Protospacer
. *  ******************* **...

72. spacer 1.13|867|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MG592415 (Vibrio phage 1.031.O._10N.261.46.F8, partial genome) position: , mismatch: 9, identity: 0.7

tggtggacagatataatacctgtcatcatg	CRISPR spacer
aggtggtcagatataatacctgctgcagtt	Protospacer
 ***** ***************.... .*

73. spacer 1.18|1197|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MK448355 (Streptococcus satellite phage Javan2, complete genome) position: , mismatch: 9, identity: 0.7

actggcaatttatcggacaaactgaaatgg	CRISPR spacer
gtggctaatttatcggacaagctgaaacaa	Protospacer
.. * .**************.******...

74. spacer 1.23|1528|30|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MN703409 (Arthrobacter phage LittleTokyo, complete genome) position: , mismatch: 9, identity: 0.7

ttccgattcagacgatccaccgtcgccaga	CRISPR spacer
ggcacgagcagccgatccaccgtcgccagc	Protospacer
  *  .  *** *****************

75. spacer 1.25|1660|31|NC_014010|PILER-CR,CRISPRCasFinder,CRT matches to MN184886 (Erwinia phage pEp_SNUABM_08, complete genome) position: , mismatch: 9, identity: 0.71

ttacccgctacttcctgaaagaatgccagtt	CRISPR spacer
ctaccagcgacttcctgaaagaatggagtcc	Protospacer
.**** ** ****************  . ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

370121 : 380096

Leptospira_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013045225.1\|370121_373283_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	4.3e-63	24.7
WP_013045226.1\|373439_374423_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_148212332.1\|374447_375461_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	9.3e-20	59.0
WP_148212333.1\|375572_376727_+	serine hydrolase	B6DZZ7	Stx2-converting_phage	1.9e-40	31.3
WP_148212228.1\|376736_377384_+	dTMP kinase	M1PSC7	Streptococcus_phage	4.4e-31	40.4
WP_013045230.1\|377384_378467_+	DNA polymerase III subunit delta'	D9ZNI9	Clostridium_phage	2.8e-06	33.0
WP_013045231.1\|378545_380096_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.8e-92	35.6

DBSCAN-SWA_2

410140 : 446538

uncultured_Mediterranean_phage(50.0%)

integrase,tRNA

attL 402814:402828|attR 440316:440330

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
402814:402828	attL	NA	NA	NA	NA
WP_013045260.1\|410140_411862_-	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	A0A0A0UXS1	uncultured_virus	9.3e-238	73.8
WP_013045261.1\|411854_413078_-	DNA cytosine methyltransferase	A0A0C5AN54	Paenibacillus_phage	8.0e-42	32.5
WP_013045263.1\|413394_414123_-	phage exonuclease	A0A2R2ZGE9	Ralstonia_phage	3.1e-49	42.7
WP_013045264.1\|414341_416105_-	DNA polymerase	A0A1B1IVZ7	uncultured_Mediterranean_phage	2.0e-126	41.8
WP_041861047.1\|416104_416449_-	nucleoside triphosphate pyrophosphohydrolase family protein	I6R9K0	Celeribacter_phage	5.2e-15	39.3
WP_013045266.1\|416517_418218_-	toprim domain-containing protein	A0A2D2W4Z3	Ralstonia_phage	2.0e-131	46.8
WP_041860712.1\|418240_418438_-	hypothetical protein	I6XKU0	Burkholderia_virus	6.2e-05	39.7
WP_049757468.1\|418424_418889_-	hypothetical protein	A0A0U1ZDL9	Ralstonia_phage	1.9e-36	57.0
WP_013045267.1\|418845_419412_-	DUF2815 family protein	A0A2R2ZGF7	Ralstonia_phage	8.0e-05	25.3
WP_190275460.1\|419687_422285_-	hypothetical protein	A0A059VA03	Pseudomonas_phage	7.8e-71	26.2
WP_013045269.1\|422493_422814_-	hypothetical protein	NA	NA	NA	NA
WP_041860715.1\|422829_423039_-	hypothetical protein	NA	NA	NA	NA
WP_013045270.1\|423467_424430_-\|integrase	tyrosine-type recombinase/integrase	M1HMA3	Pelagibacter_phage	9.8e-11	27.2
WP_013045271.1\|424731_425241_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.6e-28	42.6
WP_148212334.1\|425241_427869_-	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	4.0e-75	45.9
WP_148212231.1\|428079_428589_-	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	3.1e-40	63.2
WP_041861050.1\|428821_431707_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	60.9
WP_013045275.1\|431725_433087_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_041860716.1\|433083_433776_-	hypothetical protein	NA	NA	NA	NA
WP_013045277.1\|433768_434152_-	Mth938-like domain-containing protein	NA	NA	NA	NA
WP_013045278.1\|434154_435090_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	5.7e-64	52.8
WP_013045279.1\|435141_436725_-	protein translocase subunit SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.3e-07	28.3
WP_013045280.1\|436799_437129_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.1e-14	44.2
WP_013045281.1\|437267_438134_+	ATP-binding protein	NA	NA	NA	NA
WP_041861051.1\|438161_439112_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1P8CWQ1	Bacillus_phage	1.5e-08	33.9
WP_049757469.1\|439140_439743_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.1e-34	50.0
WP_013045284.1\|439794_440583_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.7e-35	37.7
440316:440330	attR	NA	NA	NA	NA
WP_013045285.1\|440579_441866_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.4e-99	47.0
WP_049757566.1\|441966_442740_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.0e-48	46.2
WP_013045287.1\|442920_443415_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_013045288.1\|443431_443797_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_013045290.1\|443937_445029_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-32	35.2
WP_013045291.1\|445021_445738_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-32	39.6
WP_013045292.1\|445734_446538_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.8e-34	34.6

DBSCAN-SWA_3

1055854 : 1113051

Ralstonia_phage(11.11%)

integrase,tRNA,protease

attL 1047123:1047141|attR 1091171:1091189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1047123:1047141	attL	NA	NA	NA	NA
WP_013045870.1\|1055854_1057267_+\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	2.2e-43	33.3
WP_041860775.1\|1057400_1057856_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013045871.1\|1057972_1058608_+	cation transporter	NA	NA	NA	NA
WP_041860776.1\|1058622_1059048_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_041860777.1\|1059047_1059722_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_013045873.1\|1059800_1060493_+	SCO family protein	NA	NA	NA	NA
WP_013045874.1\|1060470_1060971_+	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_013045875.1\|1060967_1061618_+	SCO family protein	NA	NA	NA	NA
WP_013045876.1\|1061614_1062988_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_013045877.1\|1062991_1063447_+	DUF411 domain-containing protein	NA	NA	NA	NA
WP_041860778.1\|1063459_1064242_+	ZIP family metal transporter	NA	NA	NA	NA
WP_041860779.1\|1064270_1064729_+	signal peptidase II	NA	NA	NA	NA
WP_013045881.1\|1064695_1066303_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_013045882.1\|1066494_1067484_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_013045883.1\|1067495_1067750_-	hypothetical protein	NA	NA	NA	NA
WP_041860780.1\|1067799_1068261_-	hypothetical protein	NA	NA	NA	NA
WP_041860781.1\|1068379_1068850_+	hypothetical protein	NA	NA	NA	NA
WP_041860782.1\|1068853_1069183_+	hypothetical protein	NA	NA	NA	NA
WP_041860783.1\|1069306_1069696_-	hypothetical protein	NA	NA	NA	NA
WP_013045885.1\|1069700_1070021_-	hypothetical protein	NA	NA	NA	NA
WP_013045886.1\|1070645_1071683_-	hypothetical protein	NA	NA	NA	NA
WP_013045887.1\|1071760_1072117_+	hypothetical protein	NA	NA	NA	NA
WP_013045888.1\|1072272_1072839_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6DWU1	Sphingobium_phage	8.6e-15	32.4
WP_013045889.1\|1073366_1074104_-	hypothetical protein	NA	NA	NA	NA
WP_041860784.1\|1074128_1075364_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013045891.1\|1075757_1076390_+	MarC family protein	NA	NA	NA	NA
WP_013045892.1\|1076481_1077000_+	DUF2721 domain-containing protein	NA	NA	NA	NA
WP_013045893.1\|1077063_1078323_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_013045894.1\|1078333_1078648_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_148212365.1\|1078713_1079814_-	aminotransferase class V-fold PLP-dependent enzyme	A0A0H3TPH2	Faustovirus	5.0e-19	26.8
WP_148212257.1\|1079848_1080598_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_013045897.1\|1080708_1081371_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_013045898.1\|1081423_1082668_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.7e-60	34.3
WP_013045899.1\|1082664_1086348_-	AsmA-like C-terminal domain-containing protein	NA	NA	NA	NA
WP_013045900.1\|1086503_1086962_+	peroxiredoxin	NA	NA	NA	NA
WP_013045901.1\|1086998_1087835_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_013045902.1\|1087864_1088974_-	peptide chain release factor 2	NA	NA	NA	NA
WP_041861178.1\|1089043_1091470_-	penicillin-binding protein 1A	NA	NA	NA	NA
1091171:1091189	attR	NA	NA	NA	NA
WP_013045904.1\|1091705_1093121_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	2.3e-16	29.6
WP_013045906.1\|1093636_1096177_+	ribonuclease E/G	NA	NA	NA	NA
WP_041860785.1\|1096241_1097411_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_013045908.1\|1097659_1099054_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_148212366.1\|1099177_1099876_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_013045910.1\|1100057_1100507_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_013045911.1\|1100508_1100994_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_013045912.1\|1100999_1102340_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_013045913.1\|1102377_1103061_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_148212367.1\|1103062_1103392_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_013045915.1\|1103468_1103924_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_013045916.1\|1104004_1104361_-	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_013045917.1\|1104848_1108496_+	vitamin B12-dependent ribonucleotide reductase	A0A1X9SGV9	Bradyrhizobium_phage	0.0e+00	55.7
WP_013045918.1\|1108667_1109135_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	1.0e-29	43.8
WP_013045919.1\|1109266_1110415_+	N-acetyltransferase	NA	NA	NA	NA
WP_013045920.1\|1110427_1112722_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.0e-175	43.7
WP_041860787.1\|1112727_1113051_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.5e-16	46.1

DBSCAN-SWA_4

2474908 : 2519849

Vibrio_phage(25.0%)

tRNA,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049757547.1\|2474908_2475508_+\|tail	phage tail tape measure protein	A0A1B2AQ26	Escherichia_phage	5.9e-06	36.8
WP_013047131.1\|2475507_2475834_+\|tail	phage tail protein	NA	NA	NA	NA
WP_013047132.1\|2475866_2476616_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	2.6e-11	29.1
WP_013047133.1\|2476612_2477404_+	C40 family peptidase	W6E9P7	Rhizobium_phage	3.1e-39	37.3
WP_013047134.1\|2477393_2478026_+\|tail	tail component of prophage CP-933O	G3ENB6	Psychrobacter_phage	1.1e-07	32.7
WP_190275447.1\|2478051_2481555_+	hypothetical protein	I6PDK0	Cronobacter_phage	3.0e-73	29.6
WP_013047136.1\|2481936_2482986_+	porin	NA	NA	NA	NA
WP_013047137.1\|2483117_2483432_+	hypothetical protein	NA	NA	NA	NA
WP_013047138.1\|2483486_2483918_+	hypothetical protein	A0A2I7R6R1	Vibrio_phage	6.3e-10	42.7
WP_041861483.1\|2483967_2484366_+	glycoside hydrolase family protein	A0A0H4A794	Pseudoalteromonas_phage	1.1e-19	43.7
WP_041861484.1\|2484388_2485432_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_013047141.1\|2485690_2485906_+	DUF2007 domain-containing protein	NA	NA	NA	NA
WP_013047142.1\|2485895_2486657_+	methyltransferase	NA	NA	NA	NA
WP_013047143.1\|2486868_2487711_+	S49 family peptidase	M4QQI0	Vibrio_phage	6.1e-09	25.8
WP_041860941.1\|2487758_2487992_+	hypothetical protein	NA	NA	NA	NA
WP_013047145.1\|2488079_2489000_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_013047146.1\|2489000_2491112_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_013047147.1\|2491227_2493894_+	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	2.3e-86	38.6
WP_041860942.1\|2493984_2494206_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_041861485.1\|2494466_2496218_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.6e-56	30.9
WP_190275448.1\|2496222_2497068_-	hypothetical protein	NA	NA	NA	NA
WP_013047151.1\|2497193_2498363_-	peptidoglycan -binding protein	NA	NA	NA	NA
WP_148212306.1\|2498366_2499437_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_013047153.1\|2499599_2500400_-	inositol monophosphatase	NA	NA	NA	NA
WP_013047154.1\|2500542_2501109_-	elongation factor P	NA	NA	NA	NA
WP_013047155.1\|2501147_2502158_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_013047156.1\|2502252_2504241_-	transketolase	NA	NA	NA	NA
WP_013047157.1\|2504610_2504856_+	hypothetical protein	NA	NA	NA	NA
WP_013047158.1\|2504852_2505176_+	cell division protein ZapA	NA	NA	NA	NA
WP_013047159.1\|2505313_2505970_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_013047160.1\|2506004_2506829_+	YmdB family metallophosphoesterase	NA	NA	NA	NA
WP_013047161.1\|2506917_2507658_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013047162.1\|2507669_2508272_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_013047163.1\|2508268_2508892_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_013047164.1\|2508902_2509955_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	5.0e-08	31.2
WP_013047165.1\|2509955_2510426_+	YbgC/FadM family acyl-CoA thioesterase	NA	NA	NA	NA
WP_013047166.1\|2510547_2511273_+	protein TolQ	NA	NA	NA	NA
WP_013047167.1\|2511272_2511701_+	protein TolR	NA	NA	NA	NA
WP_013047168.1\|2511722_2512718_+	hypothetical protein	NA	NA	NA	NA
WP_041860943.1\|2512856_2514197_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_013047170.1\|2514608_2515169_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_013047171.1\|2515287_2516538_+\|tail	TPR repeat:Molluscan rhodopsin C- tail	NA	NA	NA	NA
WP_013047172.1\|2516546_2517881_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_013047173.1\|2517938_2519849_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	3.0e-112	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection