CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013422	Halothiobacillus neapolitanus c2, complete sequence	1 crisprs	csa3,WYL,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3	0	8	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013422_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013422_1

888499-890746

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CRISPRCasFinder
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CRT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	PILER-CR

31 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_013422_1

>merge|NC_013422|1|888499-890746|CRISPRCasFinder,CRT,PILER-CR
CAGCACCGGCGCGCCTGGCGGTTAGGCCGGGCGATTCTCGAACTTATTTACGATACGATCCACACAAGTTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTCCCATATACCGCATCCAGTCGGCTGATCTTGGGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGGGTGCATGAGCAGCTGGCCATTCCAGAGCCACAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGCCTGCCATACCACCTGCCCACATCGTTTTAATAAGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGCTGCCGGTGGTGGCAACCGATGCCCACGGCTTTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGAGAATTGGGCTGGTCATGAGGTAACCCATCGATGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCATCCATCACCATTACTGCATTTGATGCAAAAATTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGGCAAGTTGTGAATTGGTATAAAGCCCCAGAACAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGATTGGAATGGTGACTTAAACTATGCCGGATATAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCCATCGTCCAATGTCACCCGGTGCAGGCTGTAATCGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGTGGTGTCCGAGCACGCTTCCCATGATTGCATGTTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTTTCGCGGATGGAAAGTTACCTCGCGCGGGGGCCGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGCCAATCCAGACCAGCGCGTTCCCAATCACGTCAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTCAAGCAAACTCAAACGCTTGTCATTCTGCGACTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGTTTGTCTCATCGAACATCCGATCAGGCGCAACGGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCCATGCTGTGCAATCAAGGCCAATGGCCGAAAAAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTTTGCTGATGTCGGCGGATCGGTCAAGTACTACCAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGAACAGCACTGATTTTGCGCTGGCAGCCATCACCGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGATAGCATTCAGCGCATCGATGACGGACTGGGCGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCCAGAAGGCCTGACCGTGGACGGTTGGCTGGATCTGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTTGCGGGGGTGGAGGCATGACCCCAACCAATACAAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCCCGCCAGCTTCCTTGCGGTTGCTGGGCATGAACTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTGAATCAATTTGCAAAGATGATAACAAGTACGCAGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTTCGGCTGCATCCGCATAGGCATCGCCAAGCTCTTTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCATTCCGGCAAAGAAGTGGCACTGTGTGAATCCGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCCGCTTGCTGCACAGTGGTTGCATCTACCGACTGCTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCTCCAGCAAATCCTGCCCGACTATGATGCTTATATCGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCCTTGGCTGGCCTGGGCCTTGTCGATCGATAGCTGGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCGTCTGATGCCGCCGATGCCGCCACCGAGCTGATCGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCAGCCCCTGGGTTGCGTTTTTAAGCGGCAAGTCGCTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTCCGCCTGAGCATGTTGCGCTGCTACGCGAGGCGCTGTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC

>NC_013422|1|1|888499-890746|CRISPRCasFinder
CAGCACCGGCGCGCCTGGCGGTTAGGCCGGGCGATTC	TCGAACTTATTTACGATACGATCCACACAAGTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCCCATATACCGCATCCAGTCGGCTGATCTTGGG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GGGTGCATGAGCAGCTGGCCATTCCAGAGCCACA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCCTGCCATACCACCTGCCCACATCGTTTTAATAAG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCTGCCGGTGGTGGCAACCGATGCCCACGGCTTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GAGAATTGGGCTGGTCATGAGGTAACCCATCGAT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	ATCCATCACCATTACTGCATTTGATGCAAAAATT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GGCAAGTTGTGAATTGGTATAAAGCCCCAGAACA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GATTGGAATGGTGACTTAAACTATGCCGGATATA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CATCGTCCAATGTCACCCGGTGCAGGCTGTAATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTGGTGTCCGAGCACGCTTCCCATGATTGCATGTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTTCGCGGATGGAAAGTTACCTCGCGCGGGGGCC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCCAATCCAGACCAGCGCGTTCCCAATCACGTCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCAAGCAAACTCAAACGCTTGTCATTCTGCGACT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTTTGTCTCATCGAACATCCGATCAGGCGCAACGG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CATGCTGTGCAATCAAGGCCAATGGCCGAAAAA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTTGCTGATGTCGGCGGATCGGTCAAGTACTACCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GAACAGCACTGATTTTGCGCTGGCAGCCATCACCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GATAGCATTCAGCGCATCGATGACGGACTGGGCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CAGAAGGCCTGACCGTGGACGGTTGGCTGGATCTG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTGCGGGGGTGGAGGCATGACCCCAACCAATACAA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CCGCCAGCTTCCTTGCGGTTGCTGGGCATGAACT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TGAATCAATTTGCAAAGATGATAACAAGTACGCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTCGGCTGCATCCGCATAGGCATCGCCAAGCTCTTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	ATTCCGGCAAAGAAGTGGCACTGTGTGAATCCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CGCTTGCTGCACAGTGGTTGCATCTACCGACTGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCCAGCAAATCCTGCCCGACTATGATGCTTATATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CTTGGCTGGCCTGGGCCTTGTCGATCGATAGCTG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTCTGATGCCGCCGATGCCGCCACCGAGCTGATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	AGCCCCTGGGTTGCGTTTTTAAGCGGCAAGTCGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CGCCTGAGCATGTTGCGCTGCTACGCGAGGCGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC

>NC_013422|1|1|888499-890746|CRT
CAGCACCGGCGCGCCTGGCGGTTAGGCCGGGCGATTC	TCGAACTTATTTACGATACGATCCACACAAGTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCCCATATACCGCATCCAGTCGGCTGATCTTGGG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GGGTGCATGAGCAGCTGGCCATTCCAGAGCCACA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCCTGCCATACCACCTGCCCACATCGTTTTAATAAG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCTGCCGGTGGTGGCAACCGATGCCCACGGCTTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GAGAATTGGGCTGGTCATGAGGTAACCCATCGAT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	ATCCATCACCATTACTGCATTTGATGCAAAAATT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GGCAAGTTGTGAATTGGTATAAAGCCCCAGAACA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GATTGGAATGGTGACTTAAACTATGCCGGATATA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CATCGTCCAATGTCACCCGGTGCAGGCTGTAATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTGGTGTCCGAGCACGCTTCCCATGATTGCATGTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTTCGCGGATGGAAAGTTACCTCGCGCGGGGGCC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCCAATCCAGACCAGCGCGTTCCCAATCACGTCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCAAGCAAACTCAAACGCTTGTCATTCTGCGACT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTTTGTCTCATCGAACATCCGATCAGGCGCAACGG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CATGCTGTGCAATCAAGGCCAATGGCCGAAAAA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTTGCTGATGTCGGCGGATCGGTCAAGTACTACCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GAACAGCACTGATTTTGCGCTGGCAGCCATCACCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GATAGCATTCAGCGCATCGATGACGGACTGGGCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CAGAAGGCCTGACCGTGGACGGTTGGCTGGATCTG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTGCGGGGGTGGAGGCATGACCCCAACCAATACAA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CCGCCAGCTTCCTTGCGGTTGCTGGGCATGAACT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TGAATCAATTTGCAAAGATGATAACAAGTACGCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTCGGCTGCATCCGCATAGGCATCGCCAAGCTCTTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	ATTCCGGCAAAGAAGTGGCACTGTGTGAATCCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CGCTTGCTGCACAGTGGTTGCATCTACCGACTGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCCAGCAAATCCTGCCCGACTATGATGCTTATATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CTTGGCTGGCCTGGGCCTTGTCGATCGATAGCTG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTCTGATGCCGCCGATGCCGCCACCGAGCTGATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	AGCCCCTGGGTTGCGTTTTTAAGCGGCAAGTCGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CGCCTGAGCATGTTGCGCTGCTACGCGAGGCGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC

>NC_013422|1|1|888569-890746|PILER-CR
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCCCATATACCGCATCCAGTCGGCTGATCTTGGG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GGGTGCATGAGCAGCTGGCCATTCCAGAGCCACA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCCTGCCATACCACCTGCCCACATCGTTTTAATAAG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCTGCCGGTGGTGGCAACCGATGCCCACGGCTTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GAGAATTGGGCTGGTCATGAGGTAACCCATCGAT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	ATCCATCACCATTACTGCATTTGATGCAAAAATT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GGCAAGTTGTGAATTGGTATAAAGCCCCAGAACA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GATTGGAATGGTGACTTAAACTATGCCGGATATA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CATCGTCCAATGTCACCCGGTGCAGGCTGTAATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTGGTGTCCGAGCACGCTTCCCATGATTGCATGTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTTCGCGGATGGAAAGTTACCTCGCGCGGGGGCC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GCCAATCCAGACCAGCGCGTTCCCAATCACGTCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCAAGCAAACTCAAACGCTTGTCATTCTGCGACT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTTTGTCTCATCGAACATCCGATCAGGCGCAACGG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CATGCTGTGCAATCAAGGCCAATGGCCGAAAAA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTTGCTGATGTCGGCGGATCGGTCAAGTACTACCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GAACAGCACTGATTTTGCGCTGGCAGCCATCACCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GATAGCATTCAGCGCATCGATGACGGACTGGGCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CAGAAGGCCTGACCGTGGACGGTTGGCTGGATCTG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTGCGGGGGTGGAGGCATGACCCCAACCAATACAA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CCGCCAGCTTCCTTGCGGTTGCTGGGCATGAACT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TGAATCAATTTGCAAAGATGATAACAAGTACGCA
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TTCGGCTGCATCCGCATAGGCATCGCCAAGCTCTTT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	ATTCCGGCAAAGAAGTGGCACTGTGTGAATCCG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CGCTTGCTGCACAGTGGTTGCATCTACCGACTGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	TCCAGCAAATCCTGCCCGACTATGATGCTTATATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CTTGGCTGGCCTGGGCCTTGTCGATCGATAGCTG
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	GTCTGATGCCGCCGATGCCGCCACCGAGCTGATC
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	AGCCCCTGGGTTGCGTTTTTAAGCGGCAAGTCGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC	CGCCTGAGCATGTTGCGCTGCTACGCGAGGCGCT
GTTTCAATCCGCGCCCGGCGGTTAGGCCGGGCGATTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013422.1\|WP_012823695.1\|879602_880406_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|182640
NC_013422.1\|WP_012823693.1\|877694_878387_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NC_013422.1\|WP_041600359.1\|892596_892962_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NC_013422.1\|WP_012823707.1\|896199_896865_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187534
NC_013422.1\|WP_012823692.1\|876581_877691_-\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131197
NC_013422.1\|WP_012823701.1\|891221_892256_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_013422.1\|WP_012823708.1\|896873_899135_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_013422.1\|WP_012823691.1\|875904_876507_+\|DUF3365-domain-containing-protein	unknown	unknown	gnl\|CDD\|378734
NC_013422.1\|WP_012823704.1\|892945_893566_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_013422.1\|WP_166635976.1\|880521_880950_-\|NAD-binding-protein	unknown	unknown	gnl\|CDD\|236711
NC_013422.1\|WP_012823700.1\|890922_891213_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013422.1\|WP_166635977.1\|880883_881663_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236711
NC_013422.1\|WP_012823709.1\|899222_899411_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|274228
NC_013422.1\|WP_012823702.1\|892303_892609_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NC_013422.1\|WP_012823705.1\|893594_894470_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_013422.1\|WP_012823706.1\|894466_896203_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_013422.1\|WP_012823698.1\|883539_884700_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_013422.1\|WP_012823699.1\|884696_887804_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_013422.1\|WP_012823697.1\|881974_883447_-\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NC_013422.1\|WP_133484607.1\|878740_879502_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270257

Protein	Function_ID	Function_description	E-value
NC_013422.1\|WP_012823695.1\|879602_880406_-\|TOBE-domain-containing-protein	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	4.56985e-44
NC_013422.1\|WP_012823693.1\|877694_878387_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	1.84484e-69
NC_013422.1\|WP_041600359.1\|892596_892962_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	6.50065e-21
NC_013422.1\|WP_012823707.1\|896199_896865_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.77892e-99
NC_013422.1\|WP_012823692.1\|876581_877691_-\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131197	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions].	1.47497e-93
NC_013422.1\|WP_012823701.1\|891221_892256_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_013422.1\|WP_012823708.1\|896873_899135_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.23442e-56
NC_013422.1\|WP_012823691.1\|875904_876507_+\|DUF3365-domain-containing-protein	gnl\|CDD\|378734	pfam11845, DUF3365, Protein of unknown function (DUF3365). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.	1.23607e-32
NC_013422.1\|WP_012823704.1\|892945_893566_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.27892e-36
NC_013422.1\|WP_166635976.1\|880521_880950_-\|NAD-binding-protein	gnl\|CDD\|236711	PRK10537, PRK10537, voltage-gated potassium channel protein.	4.47081e-46
NC_013422.1\|WP_012823700.1\|890922_891213_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.20153e-23
NC_013422.1\|WP_166635977.1\|880883_881663_-\|hypothetical-protein	gnl\|CDD\|236711	PRK10537, PRK10537, voltage-gated potassium channel protein.	5.65144e-65
NC_013422.1\|WP_012823709.1\|899222_899411_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	2.11633e-14
NC_013422.1\|WP_012823705.1\|893594_894470_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.13702e-153
NC_013422.1\|WP_012823706.1\|894466_896203_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_013422.1\|WP_012823698.1\|883539_884700_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.20655e-55
NC_013422.1\|WP_012823699.1\|884696_887804_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_013422.1\|WP_012823697.1\|881974_883447_-\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	4.33229e-169
NC_013422.1\|WP_133484607.1\|878740_879502_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.14194e-92

>NC_013422.1|WP_012823699.1|884696_887804_+|efflux-RND-transporter-permease-subunit
MSEQPRRSFSGFNLSALAVRERAVTLYFIIMVALVGVYSFISLGRAEDPAFTLKVMLVSAQWPGATARQMQDQVADPLEKALQDVPYFDRVDTTSRPGSIAMQINFREDTPPDQVQQAFYQVRKHLGDVAPTLPKGVQGPFFNDDFSDVYFTLYALTAPGLPERDLAREAERLRSAVLNVPGVAKAHILGEQPEQVYVDFDPHRLTTLGITPAQIGQALAAENTIVPAGLIETTGPRLYFRLDSGLRASAPGLVQRIENTSVNIQGKVVRIGDVANVRLGYADPPSYIIQSNGQNAIIVGVIMAKNVNGLALGERLGAFEKAESQALPLGVQLTKITDQAHAIALAVNTFQLKFFIALGVVMLVGFISLGLRAGLVVALAVPLTLSITFGIMLMTGKNLDRITLGALILSLGLLVDDAIIAIEMMLVKLEEGVDRVEAAAAAWRITAAPMLIGTLITVVGFVPIGFAQSNVGEYAGNIFWILGISLIASWLVAVVFTPYLGVHFLPKVTPHAEGSAGMYQGRIYRGLRRVVTFCVNYRWLVAGVTLLLFVASIAVMGKGVAKQFFPSSDRPELLIDINMPEGSSIEATKKVAHRVEAALHGAPQLESLSTYIGQGAPRFFLALNPELPNPAFAKIIAVAHNATERDELQAMLQKKIDDGDFPEARIRPHPLLYGPPVIWPVQFRVMGPDIRELQRIGEQVRSVMAANAHTIDPHLEWGEKVPVLDFKLDQARLAALNITPQAIAEQTQTWLSGTTATQLRVDIRSVDLSVRGSPAQSRQLTQLEALPIRLDNGKTVPLGQLGHITTAYQYPILKRRNRDPYINVNAEVQGAQPPDVTAAIWKKLESIRTDLPLGYQIQIGGSVEESGKAQASIAKVMPIMVLLMLTLIMLIMRSFPGMFMVLLTAPLGLIGAVASLALFNQPFGFVALLGLIGLAGILMRNTLILVGQIHENERQGQDRYTAVIEATIRRARPVILTALAAVLAFIPLTESTFWGPLAYTLIGGIFGGTFLTLLFLPAMYALWFRVKRPVVEKPV
>NC_013422.1|WP_012823698.1|883539_884700_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MIELKHTQPAGGLPLRNGLTSPGSVMTSGLVLVLAMAITGCQKQSAEVELPPPVVRVATIAPGTLAQPDLTGVIVAKTQSAVGFQVSGRIAERVVKRGAGVKAGEVLATLDDADFKAKQAAALAQAQQAQAEARFAQQNFTRVQSLLAKKLASQQEYDQAKSNLQAAKANEQASQAQLEQARLALGYTALKAPFASVVAAIDADQGAVVNAGQPVVTLAAGDARQALVAVPEQRLMRLPNTAQARVHGQSTAIEATFASNEGEVDPASRTWSVRFNLAANPSVKTGLGQSITLSFPKQTVPKSVPITAILGQGSQAAVFEVRQNGTVKMQPVTVTRLEHESAVISTDLASGTRIVALGVNRLHDGQRVRIQPGLGTDTAPNTEDTP
>NC_013422.1|WP_012823697.1|881974_883447_-|deoxyribodipyrimidine-photo-lyase
MTTIVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAAARWWRHHSLRSLAERLASCGSRLIIRQGEPLAELQRLIHETKANRVVWNRRMEPAARAEDTRIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVAAGLDLPTYPEPDNLPTVPRALNSLAIDELELLPAIAWDKDFYNHWQPGEPGAWSRFEDFLPLIDEYAEARNHLIGTGVSKLSAHLHFGEISPRQIVRYLLDTRGSVLEPRGIEHFVRELGWREFGAYLAYHYPQTVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMHNRARMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFNPVLQAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLKVSRQRALVHFDQIKQNTTAP
>NC_013422.1|WP_166635977.1|880883_881663_-|hypothetical-protein
MDFWFPHVPIALAVGLSGLMQITQTLSVIEEFLALPQQSIEQLSGGFSSLAIRGIPHDVIGVLLVIMSLGLLIRSRLAWMVTVLMSIASLLLELTPLASQPAGLILFHAVVLLLLFFNRQHFQRTSLTTGTLFSITGVLLTLGFGVIGSYVLGAQFKPAITDFPTALYFTIVSMSTVGYGDIIAQTTEARMFTISLIILGLLVFATSLTAILGPMMNQQIMKLVQPRGKKCNARIILSWSVTAPSLEMRPNRWKSAALK
>NC_013422.1|WP_166635976.1|880521_880950_-|NAD-binding-protein
MVGNGPFARNATESLEKRGLEVTRILPTAPAQGSDIPKDFIIGDGADSETLLKVQADAARAIIALTEDDSENAFIILAAREVNEKIKTVVAVSDAHHLNKIKRVHPDVVLALPVIGAELLAMALSGEEIKTDALLEQLLKLD
>NC_013422.1|WP_012823695.1|879602_880406_-|TOBE-domain-containing-protein
MSIYSERDLGEFVLPLALKFGEHEISNRRMKLLEAVHQTGSISGAAKAIGMTYKAAWDAIDAINNRAAKPVVVSQHGGAGGGGAVLSEYGEELIAAFGKLEAMQQELTKLFERHQIEHLTHDLRSVLMKTSARNTFSGTIKSLTKGAVNSEVVLGLQGDDEITAIITNASVENMELAVGKPAFAMIKASFIIVSPERMSSSARNQLCGVVERVTDGSVNAEVVIKLAGGNLVTAIITEGSTQSLGLKAGDKACAIIKASHVIIGVDN
>NC_013422.1|WP_133484607.1|878740_879502_-|molybdate-ABC-transporter-substrate-binding-protein
MLTTTFATTLLLSASIASAQADTITVAVAANFTKAAEQIGEQWSKETGNKVRFSFGPTGGLYAQINNGAPFDAFFSADTKTPERLVKAGKATDFRVYAQGKLALYSTQLPVAKEHNQIIKAAKFNHIAVANSKAAPYGAAGVAVLKNMGMYDKLKSENKIATGESITATFQFVMTGNAQLGFVAFSQLMDPQSPAHNKGEYWLVPQKDYAPINQGAVLIKTSKHAKTAKEFMDYMNSPAAKKIIESYGYAMPQ
>NC_013422.1|WP_012823693.1|877694_878387_-|molybdate-ABC-transporter-permease-subunit
MQILGYPLDVGPILLTLEVATITSIVLLLIGTPIAWWLANMRSRARIFFEALVALPLVLPPTVLGFYLIIALNPDGTLAQFLKYFGITGQLTFNKTGLIIGSVVYSLPFTVQPIMAAFEALPTQIVDAARTMRASFFDRFFTVIVPLARQGFLVGVVLTFAHTVGEFGVVLMVGGNIEGMTRTVSIAIFDHVESLEYTEAHILSILMLIFSMLVLIFVYGLNRRLQIKTG
>NC_013422.1|WP_012823692.1|876581_877691_-|molybdenum-ABC-transporter-ATP-binding-protein
MFQGNLQLKLGNFALDSGEFAFESSGVTVLFGRSGSGKSTLLRAMSGLDKQSHGELRFNDEVWQSGKKALPVEQRDIGFVFQTAALLPNKNVQGNLDFAIKRIPKHRQHGPSTQEIIERVGISHLLNRPVDNLSGGERQRVAIARALLTRPRLLMMDEPLSALDWRAKSELLLLIESVIADYQIPTLYITHAPIEVERLANRVVFMADGKITSIESLGDATSRIDSPLFTEEGPVSVLHGQLGDIDPDGLIAFQSRQQPGSDSAFTFWLNRTEHSNPHASGAQARLRVLARDVAIALHRPEGISMLNQIPATISQIEAEPPTQRQVVFLALADGQTLLAELSRRSVQRLGLAIGQTVFALVKTAALLDR
>NC_013422.1|WP_012823691.1|875904_876507_+|DUF3365-domain-containing-protein
MLSPNIYLRYSLAAVIAISVTFPLGTLAESAQAQMSEQTAMQKSQAAIKEYATTLKAALQTAMKAGGPMAAIPVCHTQAPQIAAQVGKKYDLEIHRTSLKPRAIAPQPWEKTVLEQFEVEKDAGKPIGKIVWHKTVEVDGQKELRLMKAIPTGEVCLTCHGTNVAPAVLSKIKSLYPNDEATGYKLGDIRGAFSVTAALN
>NC_013422.1|WP_012823700.1|890922_891213_-|CRISPR-associated-endonuclease-Cas2
MLIIVAYDVSTETAAGRKRLRRVAKVCERMGQRVQKSLFECTINEMQYEQLERDLLNEIEETEDNLRFYRIIEPVEMRVKQYGCFRSVDFEGTLIV
>NC_013422.1|WP_012823701.1|891221_892256_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MHTVQNTLYIMTPNAYVHLENATVRIDVEREKKLQVPLHHLNGLVCFGNIMISPALMHRLADDGKSLVLMDSSGRFKARLEGPVSGNILLRQAHHRQASDAAFALEIARTIVSGKLKNSRSVVQRGARETSDTIETTQLTRSADNLAASLRAAAAATSMDELRGIEGEAARGYFSAINLIVKTAMRANFQLNGRTRRPPLDRFNALISFLYAMLMNDCRSAIEATGLDAQLGFLHAVRPGRAALALDLMEEFRAIAADRLALTLINRGQINASDFDEREGGAVMLNDRGRRAVVTAWQERKQEIVTHPLTETKIPIGLLPFIQARFLARTIRGEMDGYLPYQSK
>NC_013422.1|WP_012823702.1|892303_892609_+|ribbon-helix-helix-protein,-CopG-family
MATLNLRLPDSLDRQLSALAAQTQQNRSDLARAALEQYLRDQERERLMAEMEAAFRVLATSPEARAESIGIAEEFMPLENEALDFVEGREPGDAESEAWWK
>NC_013422.1|WP_041600359.1|892596_892962_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MVEIMRRGDIWLARLNPNTGAEIGKVRPVVILLAQRYLDAGSPVVMIAPLTTQFWPGMTALRIAVPQRGRLLKDSFVALEQTRALDRSRFGDTRLAELSADEMQILDRQLMAMFGMVIAPH
>NC_013422.1|WP_012823704.1|892945_893566_-|CRISPR-associated-protein-Cas4
MNEPDSVPLSALQHWVYCPRQCGLIHLEQAFEDNIHTARGQAVHHLVDTPGYEIKSGVRVERALPLWSDQYNLIGKADLVEFHPDGSIYPVEFKHGAKRQKLHDDIQLAAQAICLEDMLGRPVPKAAIFHASSHRRREVAITQALRDLVLATAEDIRAMLASSKLPPPVNDARCKECSLKEICQPEALAEQMRLHRLREELFNVAQ
>NC_013422.1|WP_012823705.1|893594_894470_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLTNRYDFVLLFDVKDGNPNGDPDAGNLPRMDAETGHGLMTDVSLKRKVRNFVGIAKGEQPPYEIYVKEKAILNNQHKRAYVGIGREELLAGDDKKRKGGDAVDDARQWMCRNFFDVRTFGAVMSTGINCGQVRGPVQLTFARSIDPIIAQEHSITVCAARKEDKPIEEQIGIQGRKHTVPYGLYMAHGFISSFLAKQTGFSEDDLELLWQALTQMFEHDRSAARGEMTTRGLYVFKHDSELGNAPAHALFERIQPKLKPGISVPRNFTDYEVWVDEADFPAGVTLLKKF
>NC_013422.1|WP_012823706.1|894466_896203_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALNDYYQRRQRSSNPQDRLPAFGLEEKEISFVIEIDAKGRLVNLADTRTIEGKKKIGQRFLVPQGIKKTSGVAANLLWDTAEYVLGVDTKGKPERVVEQHAAFRARLEALPEDALRDAGIQAILAFLKNIDLKQLETLPAWPDILTTNPVMTFRLHGDVELVCQRPAIVDTTAQTIEEKPDGICLVSGIPMAIERLHPSIKGVWGAQTSGANIVSFNLDAFNSYGKSRGANAPLGKPATFAYTTALNHLLARDSRQRIQVGDASTVFWAEQANDLETALPDLFGEPPKDDPNRGTDALKVLYRAVQTGKFTNGSATDRFHVLGLSPNAARIAIRFWETASALNLAKRIACHFDDINIARAPHDPEHLSLFRLLTSLAVQGKADNIPPNLGGEVMRAILEDLPYPATLLNQAVQRNRAEQKPNYARAAIIKASLNRLIRRTHNEKEFMVMLDPTNTHPAYLLGRLFATLEKIQEEASPGLNATIRDRYYGAASSTPVAVFTTLLRLHNHHLGKLSKGRGVQMERLVGEIMGGLDDFPRILALPDQGRFALGYYHQRQAFFTKSDTPTTNNPEESK
>NC_013422.1|WP_012823707.1|896199_896865_-|type-I-C-CRISPR-associated-protein-Cas5
MKTYCLELTGDFACFTRPEMKVERVSYDVITPSAARACFEAILWKPAIRWHIRKIEVLKPIRWINLRRNEVASVVSTRNVETAMKNGIGILGLNIEDDRQQRAGLFLRDVAYRVHADLEVLPNAAPDNTPMKFQEMFERRAKRGQCVNQPYLGCREFAANFRLVADLAAEPATIDETRELGFMLHDLDFTHPADPAPRFFRARLENGVVNVPAWDSEEVRG
>NC_013422.1|WP_012823708.1|896873_899135_-|CRISPR-associated-helicase/endonuclease-Cas3
MEKIQHIAHAKQDLDGNWNAPHDLVDHLNCVAMRAADHARPFGGQEWAHLAGLWHDLGKFRPRFQQYIRKASGFDFNADASIKGEAGKAPHSTAGALLACDRFKESGRVLAYLIAGHHAGLYDWHSESSSLEYRLQQVDSREELDQALAENPPAEIIKHRTFTPDMRTIPGGKDGFALWVRMLFSCLVDADFLDTESYMDMDKSAQRGDWQGMQKLLEQFDKFMARKTFAAEPTPVNQLRTDILRQCREKSHEPPGLFSLTVPTGGGKTLSSMAFALEHAKRNNKRRIIYVIPYTSIIEQTADIFRDIFGEAVIEHHSNAEVDANKENSRSRLACENWDASIVVTTNVQFFESLFAAKTSRCRKLHNIVDSVVVMDEAQLIPAEFLQPILDVLNLLTLHYGVTVVLSTATQPALATREYFDAKNNMRGLENVREIMDDPDALYAQLERVNVRLPTDWNTPTSWDTLANEIKQHNSVLTIVNRRNDAHELWDLMPEGTLHLSALMCGEHRSQVIKQIRARLKERVPTRVISTQLVEAGVDVDFPVVYRALAGLDSIAQAAGRCNREGKLERGEVVVFVPPKPAPPGLLRKGEDACRSVLHNRTGKPLERDLFARYFEKLYHACDLDAQNITKLLEVDGQTLAVNFRTAADKFKLIKDEDSAPVIVRYRGVDGNDDKVDELLNTLRKHGSERWLMRKLQRYTVTIHRREIIKLLSQGDVEEILPGLYIQISDWLYHPILGLNPNGAPAKLTNFIV
>NC_013422.1|WP_012823709.1|899222_899411_-|HigA-family-addiction-module-antidote-protein
MTMHNPPHPGAFIRQIYLEPQQLSVRALAESLGVAPSTITGIINGHSAISQTISDLASSPKS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013422_1	1.25\|890248\|33\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890248-890280	33	MN927226	Escherichia phage vB_EcoS_XY2, complete genome	12859-12891	3	0.909
NC_013422_1	1.25\|890248\|33\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890248-890280	33	MT682064	Klebsiella virus KpV2811, complete genome	24477-24509	3	0.909
NC_013422_1	1.25\|890248\|33\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890248-890280	33	MK327140	Klebsiella phage YX3973, complete genome	43074-43106	3	0.909
NC_013422_1	1.23\|890104\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890104-890137	34	MN694585	Marine virus AFVG_250M655, complete genome	7899-7932	6	0.824
NC_013422_1	1.5\|888821\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	888821-888854	34	LR597645	Escherichia phage Fraca genome assembly, chromosome: 1	5561-5594	7	0.794
NC_013422_1	1.5\|888821\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	888821-888854	34	NC_019708	Enterobacteria phage mEp235, complete genome	5369-5402	7	0.794
NC_013422_1	1.9\|889105\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	889105-889138	34	MN693999	Marine virus AFVG_250M363, complete genome	22231-22264	8	0.765
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1094288-1094321	8	0.765
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	1191082-1191115	8	0.765
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	614619-614652	8	0.765
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	210529-210562	8	0.765
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	388337-388370	8	0.765
NC_013422_1	1.31\|890676\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890676-890709	34	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	446284-446317	8	0.765
NC_013422_1	1.23\|890104\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890104-890137	34	NZ_CP026237	Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence	225255-225288	9	0.735
NC_013422_1	1.23\|890104\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890104-890137	34	NZ_CP022152	Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence	120899-120932	9	0.735
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010625	Phaeobacter inhibens strain P51 plasmid pP51_b, complete sequence	27407-27441	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010670	Phaeobacter inhibens strain P57 plasmid pP57_b, complete sequence	27407-27441	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010597	Phaeobacter inhibens strain P10 plasmid pP10_b, complete sequence	27418-27452	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NC_018287	Phaeobacter inhibens DSM 17395 plasmid pPGA1_78, complete sequence	52180-52214	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010761	Phaeobacter inhibens strain P80 plasmid pP80_e, complete sequence	27404-27438	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010604	Phaeobacter inhibens strain P83 plasmid pP83_e, complete sequence	27404-27438	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP031950	Phaeobacter inhibens strain BS107 plasmid unnamed2, complete sequence	52180-52214	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010743	Phaeobacter inhibens strain P59 plasmid pP59_b, complete sequence	27401-27435	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010620	Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_c, complete sequence	27407-27441	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010731	Phaeobacter inhibens strain P88 plasmid pP88_f, complete sequence	27402-27436	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010710	Phaeobacter inhibens strain P66 plasmid pP66_e, complete sequence	27404-27438	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010701	Phaeobacter inhibens strain P24 plasmid pP24_e, complete sequence	27407-27441	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP010747	Phaeobacter inhibens strain P48 isolate M21-2.3 plasmid pP48_b, complete sequence	27407-27441	9	0.743
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP019310	Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-3, complete sequence	33874-33908	9	0.743
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	433882-433915	9	0.735
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	426234-426267	9	0.735
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	434066-434099	9	0.735
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	97854-97887	9	0.735
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP022668	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence	314341-314374	9	0.735
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	570468-570501	9	0.735
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	183849-183882	9	0.735
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	174242-174275	9	0.735
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP040761	Paracoccus sp. 2251 plasmid unnamed5, complete sequence	204472-204505	9	0.735
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	203701-203734	9	0.735
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	545335-545369	10	0.714
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	573424-573458	10	0.714
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	529810-529844	10	0.714
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	544232-544266	10	0.714
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	545335-545369	10	0.714
NC_013422_1	1.27\|890390\|35\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890390-890424	35	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	529810-529844	10	0.714
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NC_008381	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence	235847-235880	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	243931-243964	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	66863-66896	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	7782-7815	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	7831-7864	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	7831-7864	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NC_021907	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence	7831-7864	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	7788-7821	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP054026	Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence	38912-38945	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	7788-7821	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	36881-36914	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	210404-210437	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	210404-210437	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	MH271316	Microbacterium phage Tandem, complete genome	28476-28509	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	MH271310	Microbacterium phage Pioneer3, complete genome	28537-28570	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	MK376963	Microbacterium phage Alleb, complete genome	28540-28573	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	MH271307	Microbacterium phage OlinDD, complete genome	28529-28562	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	MH271300	Microbacterium phage Hortus1, complete genome	28530-28563	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	446571-446604	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	442007-442040	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	354738-354771	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	318252-318285	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	443202-443235	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	198892-198925	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP027237	Actinomyces sp. oral taxon 897 strain F0631 plasmid unnamed1, complete sequence	4067-4100	10	0.706
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	30769-30802	10	0.706
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP050095	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence	11482-11515	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP050100	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence	11497-11530	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP025017	Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence	11501-11534	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP020897	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence	7929-7962	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP053443	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence	11497-11530	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	7921-7954	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	7909-7942	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	7941-7974	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	7940-7973	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013597	Rhizobium sp. N741 plasmid pRspN741b, complete sequence	7841-7874	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	7941-7974	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	7935-7968	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	7935-7968	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	7934-7967	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	7935-7968	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	7935-7968	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	8781-8814	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	7941-7974	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013501	Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence	7841-7874	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	7934-7967	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013507	Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence	7841-7874	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013518	Rhizobium sp. N113 plasmid pRspN113a, complete sequence	7841-7874	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	7935-7968	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013491	Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence	7841-7874	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013496	Rhizobium sp. N621 plasmid pRspN621a, complete sequence	7841-7874	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP013591	Rhizobium sp. N871 plasmid pRspN871a, complete sequence	7841-7874	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	124074-124107	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	124819-124852	11	0.676
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	511262-511295	11	0.676
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	450598-450631	11	0.676
NC_013422_1	1.29\|890533\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890533-890566	34	NC_041891	Propionibacterium phage B22, complete genome	16976-17009	11	0.676
NC_013422_1	1.28\|890462\|34\|NC_013422\|CRISPRCasFinder,CRT,PILER-CR	890462-890495	34	NZ_KF418775	Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence	105813-105846	12	0.647

1. spacer 1.25|890248|33|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MN927226 (Escherichia phage vB_EcoS_XY2, complete genome) position: , mismatch: 3, identity: 0.909

attccggcaaagaagtggcactgtgtgaatccg	CRISPR spacer
attccggcaaagaagtgacactgtgtaaatcct	Protospacer
*****************.********.*****

2. spacer 1.25|890248|33|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MT682064 (Klebsiella virus KpV2811, complete genome) position: , mismatch: 3, identity: 0.909

attccggcaaagaagtggcactgtgtgaatccg	CRISPR spacer
attccggcaaagaagtgacactgtgtaaatcct	Protospacer
*****************.********.*****

3. spacer 1.25|890248|33|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MK327140 (Klebsiella phage YX3973, complete genome) position: , mismatch: 3, identity: 0.909

attccggcaaagaagtggcactgtgtgaatccg	CRISPR spacer
attccggcaaagaagtgacactgtgtaaatcct	Protospacer
*****************.********.*****

4. spacer 1.23|890104|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MN694585 (Marine virus AFVG_250M655, complete genome) position: , mismatch: 6, identity: 0.824

tgaatcaatttgcaaagatgataac-aagtacgca	CRISPR spacer
tagatcaatacgcaaagatgataacaaaatacgc-	Protospacer
*..****** .************** **.*****

5. spacer 1.5|888821|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to LR597645 (Escherichia phage Fraca genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.794

gctgccggtggtggcaaccgatgcccacggcttt-	CRISPR spacer
cctgccggtggtagcaaccgaag-ccgcagcattc	Protospacer
 ***********.******** * **.*.** **

6. spacer 1.5|888821|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_019708 (Enterobacteria phage mEp235, complete genome) position: , mismatch: 7, identity: 0.794

gctgccggtggtggcaaccgatgcccacggcttt-	CRISPR spacer
cctgccggtggtagcaaccgaag-ccgcagcattc	Protospacer
 ***********.******** * **.*.** **

7. spacer 1.9|889105|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MN693999 (Marine virus AFVG_250M363, complete genome) position: , mismatch: 8, identity: 0.765

gattggaatggtgacttaaactatgccggatata	CRISPR spacer
gattggaatggtgacttaatatattatgattatg	Protospacer
*******************  ***  .*. ***.

8. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
ctctgatgccgccgttgccgccaccgtggcctac	Protospacer
 ************* *********** * .   *

9. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 8, identity: 0.765

gtctgatgccgccgatgccgccaccgagctgatc--	CRISPR spacer
cgctgatgccgttgatgccgccaccga--tgacgca	Protospacer
  *********..**************  ***.

10. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 8, identity: 0.765

gtctgatgccgccgatgccgccaccgagctgatc--	CRISPR spacer
cgctgatgccgttgatgccgccaccga--tgacgca	Protospacer
  *********..**************  ***.

11. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 8, identity: 0.765

gtctgatgccgccgatgccgccaccgagctgatc--	CRISPR spacer
cgctgatgccgttgatgccgccaccga--tgacgca	Protospacer
  *********..**************  ***.

12. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

gtctgatgccgccgatgccgccaccgagctgatc--	CRISPR spacer
cgctgatgccgttgatgccgccaccga--tgacgca	Protospacer
  *********..**************  ***.

13. spacer 1.31|890676|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 8, identity: 0.765

--cgcctgagcatgttgcgctgctacgcgaggcgct	CRISPR spacer
gttgcgtta--ctgttgcgctgctacgtgatgcgct	Protospacer
  .** * *   ***************.** *****

14. spacer 1.23|890104|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026237 (Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence) position: , mismatch: 9, identity: 0.735

tgaatcaatttgcaaagatgataacaagtacgca	CRISPR spacer
tgaatcaatttacaaagatgaaaaaacaaaaaaa	Protospacer
***********.********* ** * . * . *

15. spacer 1.23|890104|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022152 (Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence) position: , mismatch: 9, identity: 0.735

tgaatcaatttgcaaagatgataacaagtacgca	CRISPR spacer
tgaatcaatttacaaagatgaaaaaacaaaaaaa	Protospacer
***********.********* ** * . * . *

16. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010625 (Phaeobacter inhibens strain P51 plasmid pP51_b, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

17. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010670 (Phaeobacter inhibens strain P57 plasmid pP57_b, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

18. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010597 (Phaeobacter inhibens strain P10 plasmid pP10_b, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

19. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_018287 (Phaeobacter inhibens DSM 17395 plasmid pPGA1_78, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

20. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010761 (Phaeobacter inhibens strain P80 plasmid pP80_e, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

21. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010604 (Phaeobacter inhibens strain P83 plasmid pP83_e, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

22. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031950 (Phaeobacter inhibens strain BS107 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

23. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010743 (Phaeobacter inhibens strain P59 plasmid pP59_b, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

24. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010620 (Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_c, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

25. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010731 (Phaeobacter inhibens strain P88 plasmid pP88_f, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

26. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010710 (Phaeobacter inhibens strain P66 plasmid pP66_e, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

27. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010701 (Phaeobacter inhibens strain P24 plasmid pP24_e, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

28. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010747 (Phaeobacter inhibens strain P48 isolate M21-2.3 plasmid pP48_b, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggtcc	Protospacer
********* ********** ***** ..*.  .*

29. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019310 (Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-3, complete sequence) position: , mismatch: 9, identity: 0.743

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
tccagcaaaacctgcccgacgatgatttctggccc	Protospacer
********* ********** ***** ..*.  .*

30. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.735

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gtgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 * **.***.***************** .  * *

31. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 9, identity: 0.735

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gtgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 * **.***.***************** .  * *

32. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.735

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gtgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 * **.***.***************** .  * *

33. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gtgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 * **.***.***************** .  * *

34. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 9, identity: 0.735

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gtgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 * **.***.***************** .  * *

35. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.735

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gtgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 * **.***.***************** .  * *

36. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 9, identity: 0.735

---gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cgtgctcgg---cgccgatgccaccaccgagcagatc	Protospacer
   *...*.   **********.********* ****

37. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 9, identity: 0.735

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cggtcaggccgccgaagccgccgccgagctgggc	Protospacer
   * * ******** ******.********. *

38. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040761 (Paracoccus sp. 2251 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.735

gtctgat-gccgccgatgccgccaccgagctgatc	CRISPR spacer
-tgtggcggccgccgatgccgcccccgatctggcg	Protospacer
 * **.. *************** **** ***..

39. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 9, identity: 0.735

---gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
caagcc---tgccgccgatgccgccgccaagctcgcc	Protospacer
   *.*   ****************.**.**** ..*

40. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 10, identity: 0.714

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
gcaagcacatcctgcccgactgtgatgcccgtcgg	Protospacer
 * **** *************.******...*

41. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 10, identity: 0.714

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
gcaagcacatcctgcccgactgtgatgcccgtcgg	Protospacer
 * **** *************.******...*

42. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 10, identity: 0.714

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
gcaagcacatcctgcccgactgtgatgcccgtcgg	Protospacer
 * **** *************.******...*

43. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 10, identity: 0.714

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
gcaagcacatcctgcccgactgtgatgcccgtcgg	Protospacer
 * **** *************.******...*

44. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 10, identity: 0.714

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
gcaagcacatcctgcccgactgtgatgcccgtcgg	Protospacer
 * **** *************.******...*

45. spacer 1.27|890390|35|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 10, identity: 0.714

tccagcaaatcctgcccgactatgatgcttatatc	CRISPR spacer
gcaagcacatcctgcccgactgtgatgcccgtcgg	Protospacer
 * **** *************.******...*

46. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcttcggg	Protospacer
 . **.***.***************** *    *

47. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gtgggttggtctgggccttgtcgatcgcctcagg	Protospacer
 * **.***.***************** .    *

48. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

49. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

50. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_007764 (Rhizobium etli CFN 42 plasmid p42c, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

51. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

52. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_021907 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

53. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

54. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054026 (Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

55. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

56. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 10, identity: 0.706

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctccgg	Protospacer
 . **.***.***************** .  * *

57. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cgctgatgccgttgatgccgccaccgatgacaca	Protospacer
  *********..**************    *.

58. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cgctgatgccgttgatgccgccaccgatgacaca	Protospacer
  *********..**************    *.

59. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MH271316 (Microbacterium phage Tandem, complete genome) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
agttgaatccgccgatgccgccaccgaggccgtt	Protospacer
. .***  ******************** . .*.

60. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MH271310 (Microbacterium phage Pioneer3, complete genome) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
agttgaatccgccgatgccgccaccgaggccgtt	Protospacer
. .***  ******************** . .*.

61. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MK376963 (Microbacterium phage Alleb, complete genome) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
agttgaatccgccgatgccgccaccgaggccgtt	Protospacer
. .***  ******************** . .*.

62. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MH271307 (Microbacterium phage OlinDD, complete genome) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
agttgaatccgccgatgccgccaccgaggccgtt	Protospacer
. .***  ******************** . .*.

63. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to MH271300 (Microbacterium phage Hortus1, complete genome) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
agttgaatccgccgatgccgccaccgaggccgtt	Protospacer
. .***  ******************** . .*.

64. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
caaggctgccgccgatgccgccgccaagcttgcc	Protospacer
    * ****************.**.**** ..*

65. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
caaggctgccgccgatgccgccgccaagctcgcc	Protospacer
    * ****************.**.**** ..*

66. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cgatcatgccgccggtgccgccaccgggccgcgt	Protospacer
   * *********.***********.**.*  .

67. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cagcgaagccgccggtgccgccaccgaggcggcc	Protospacer
   .** *******.************* .*..*

68. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
caaggctgccgccgatgccgccgccaagctcgcc	Protospacer
    * ****************.**.**** ..*

69. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
caaggctgccgccgatgccgccgccaagctcgcc	Protospacer
    * ****************.**.**** ..*

70. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027237 (Actinomyces sp. oral taxon 897 strain F0631 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
gatcctcgccgccgacgccgccagcgagctgggc	Protospacer
* ..  .********.******* *******. *

71. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.706

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cggccaggccgccgaagccgccgccgagctgggc	Protospacer
   . * ******** ******.********. *

72. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcagg	Protospacer
 . **.***.***************** .    *

73. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050100 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcagg	Protospacer
 . **.***.***************** .    *

74. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcagg	Protospacer
 . **.***.***************** .    *

75. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020897 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

76. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcagg	Protospacer
 . **.***.***************** .    *

77. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

78. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

79. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

80. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

81. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013597 (Rhizobium sp. N741 plasmid pRspN741b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

82. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

83. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

84. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

85. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

86. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

87. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

88. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

89. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

90. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013501 (Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

91. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

92. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013507 (Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

93. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013518 (Rhizobium sp. N113 plasmid pRspN113a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

94. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

95. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013491 (Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

96. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013496 (Rhizobium sp. N621 plasmid pRspN621a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

97. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013591 (Rhizobium sp. N871 plasmid pRspN871a, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

98. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

99. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 11, identity: 0.676

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
gcgggttggtctgggccttgtcgatcgcctcggg	Protospacer
 . **.***.***************** .    *

100. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 11, identity: 0.676

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
gtcggatgccgccgatgcagccacgggagcatcg	Protospacer
*** ************** ***** *.. .. .

101. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 11, identity: 0.676

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
tggcggcgctgccgatgccgccgccgagctggcg	Protospacer
   .*..**.************.********..

102. spacer 1.29|890533|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 11, identity: 0.676

gtctgatgccgccgatgccgccaccgagctgatc	CRISPR spacer
cgacgaagccgccgaagccgccaccgaggctgcc	Protospacer
   .** ******** ************ . ..*

103. spacer 1.28|890462|34|NC_013422|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF418775 (Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence) position: , mismatch: 12, identity: 0.647

cttggctggcctgggccttgtcgatcgatagctg	CRISPR spacer
taccctcagcttcggccttgtcgatcgatagcgc	Protospacer
. .  ...**.* *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1999474 : 2007430

Staphylococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012824718.1\|1999474_2000407_+	histone deacetylase family protein	A0A2K9L2T7	Tupanvirus	6.1e-26	31.9
WP_012824719.1\|2000539_2001340_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_041600977.1\|2001407_2001911_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_041600978.1\|2001994_2002480_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.9e-29	49.3
WP_012824722.1\|2002510_2003644_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	M4QPK3	Synechococcus_phage	2.1e-36	41.7
WP_012824723.1\|2003737_2004388_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.4e-29	38.7
WP_012824724.1\|2004477_2005638_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.2e-44	35.0
WP_012824725.1\|2005627_2006155_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_012824726.1\|2006176_2007430_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	4.4e-104	53.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage