CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013657	Lactococcus lactis subsp. lactis KF147 plasmid pKF147A, complete sequence	0 crisprs	NA	0	0	0	0
NC_013656	Lactococcus lactis subsp. lactis KF147, complete sequence	2 crisprs	cas3,DEDDh,csa3,DinG	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013656_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013656_1

545053-545141

Orphan

Consensus_repeat	Method
GTCGCATTGAACTGACATGAATCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013656_1

>merge|NC_013656|1|545053-545141|CRISPRCasFinder
GTCGCATTGAACTGACATGAATCTTGTCAGCAATTTTTCTATCTACAACTTCAATGCTCCCCTTGGTCGCATTGAACTGACGTGAATCT

>NC_013656|1|1|545053-545141|CRISPRCasFinder
GTCGCATTGAACTGACATGAATCT	TGTCAGCAATTTTTCTATCTACAACTTCAATGCTCCCCTTG
GTCGCATTGAACTGACGTGAATCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013656.1\|WP_010905438.1\|539722_540466_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_013656.1\|WP_012897285.1\|545850_546864_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NC_013656.1\|WP_003130816.1\|547006_547642_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NC_013656.1\|WP_012897281.1\|540630_541998_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225180
NC_013656.1\|WP_012897280.1\|536274_538188_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_013656.1\|WP_033900539.1\|526493_527780_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NC_013656.1\|WP_003130829.1\|538264_539608_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NC_013656.1\|WP_080513146.1\|525638_526400_+\|inositol-monophosphatase-family-protein	unknown	unknown	gnl\|CDD\|238815
NC_013656.1\|WP_003131738.1\|528127_529411_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NC_013656.1\|WP_012897282.1\|542282_542621_+\|hypothetical-protein	unknown	unknown	unknown
NC_013656.1\|WP_012897283.1\|542671_544918_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NC_013656.1\|WP_012897290.1\|553276_554029_+\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|235694
NC_013656.1\|WP_003131739.1\|527779_527971_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|378713
NC_013656.1\|WP_012897286.1\|547795_548251_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NC_013656.1\|WP_038603163.1\|550523_551345_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270338
NC_013656.1\|WP_012897287.1\|548261_550340_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_013656.1\|WP_012897284.1\|545207_545678_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NC_013656.1\|WP_012897289.1\|551359_552478_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223697
NC_013656.1\|WP_003130500.1\|554290_554698_+\|hypothetical-protein	unknown	unknown	unknown
NC_013656.1\|WP_003130498.1\|552545_553001_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568

Protein	Function_ID	Function_description	E-value
NC_013656.1\|WP_010905438.1\|539722_540466_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.82272e-56
NC_013656.1\|WP_012897285.1\|545850_546864_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	1.45639e-176
NC_013656.1\|WP_003130816.1\|547006_547642_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	3.21162e-57
NC_013656.1\|WP_012897281.1\|540630_541998_+\|MFS-transporter	gnl\|CDD\|225180	COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism].	1.10549e-159
NC_013656.1\|WP_012897280.1\|536274_538188_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_013656.1\|WP_033900539.1\|526493_527780_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NC_013656.1\|WP_003130829.1\|538264_539608_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NC_013656.1\|WP_080513146.1\|525638_526400_+\|inositol-monophosphatase-family-protein	gnl\|CDD\|238815	cd01637, IMPase_like, Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.	7.63468e-83
NC_013656.1\|WP_003131738.1\|528127_529411_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	2.08784e-160
NC_013656.1\|WP_012897290.1\|553276_554029_+\|enoyl-ACP-reductase-FabI	gnl\|CDD\|235694	PRK06079, PRK06079, enoyl-[acyl-carrier-protein] reductase FabI.	9.9529e-159
NC_013656.1\|WP_012897283.1\|542671_544918_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NC_013656.1\|WP_003131739.1\|527779_527971_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|378713	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta. This short 60-residue long bacterial family is the beta subunit of the DNA-directed RNA polymerase, likely to be EC:2.7.7.6. It is membrane-bound and is referred to by the name EpuA.	3.57459e-13
NC_013656.1\|WP_012897286.1\|547795_548251_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	3.8216e-62
NC_013656.1\|WP_038603163.1\|550523_551345_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270338	cd13620, PBP2_GltS, Substrate binding domain of glutamate or arginine ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily. This family comprises of the periplasmic-binding protein component (GltS) of an ABC transporter specific for glutamate or arginine from Lactococcus lactis, as well as its closely related proteins. The GltS domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.46858e-98
NC_013656.1\|WP_012897287.1\|548261_550340_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_013656.1\|WP_012897284.1\|545207_545678_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	2.34589e-39
NC_013656.1\|WP_012897289.1\|551359_552478_+\|M20-family-metallopeptidase	gnl\|CDD\|223697	COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism].	1.90619e-62
NC_013656.1\|WP_003130498.1\|552545_553001_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	5.02784e-62

>NC_013656.1|WP_012897283.1|542671_544918_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MLCQNCNINEATIHLYTSVNGQKKQIDLCQNCYQIMKSGGQEALFGAGNASNGNSDEPFNPFNDIFSALHGQDFNGAASTQTPPTQTGGRGPRGPQNPRAKQPKGMLEEFGINITESARRGEIDPVIGRDEEIKRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQARYEDYHHVKYTDEAIEAAAHLSNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPEDINRRIADAETKKNEATQAEDFEKAAHFRDQITKLRELQNHEVSDDEIPVITEKDIEQIVEQKTHIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVGPTGVGKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEFSALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQAAKEKLVDLGYNPAMGARPLRRTIQENIEDSIADFYIEHPEYKELVADLIDDKIVISNQAQEAAETTDEEVPAE
>NC_013656.1|WP_012897282.1|542282_542621_+|hypothetical-protein
MTTTVYFEKNGGIDIELRGARKVLSLRKHIKIDPENLESVQLVSDMKKPKFYKKVAGTNAWYYGGWFRENGENEFWDVRNNERVLVITTKNFKYKKLYIEVGPDFRLTPSKP
>NC_013656.1|WP_012897281.1|540630_541998_+|MFS-transporter
MFGFLKPAPDAEQKISEEKVPRLYKMWQTRVLISTVIVYIGYYIIRLIFTVQQNDISKAYGFSMGQIGTILSMFGIGYGISKLIMGTLADRANPNRYVATGLIVSAIINALYGATQSFGMIVFLMLLNSVMQGMGAAACQRLVGLWFGRKAKGSIMARGTAFSIWSSAHNAGAFMCVAVINLPAFFFGASLQWSFWTASIVSIIIAIIVLFLGSDRPTTKGLPTIEEYSGDKVVIKDGEIVEGDVSNDNVFKIFFEYIVKNKLVWAVILTSLSIYVVRYGIMSWIPNYLVNVKEFDNSTAKWLTGIFELAAVPGVIIIGFITDLLKGRRAIMVLVSLIAMLACLITYFAATNHTLIIIVLLIMGTFIYAPATIVGLMVNEAVPKFANGMSTGTMGFCQYIIGEVTATLVIGWLVQAYGWSAGNIIVYIFAGIAILASIYILVHQNRLYKKIDDAG
>NC_013656.1|WP_010905438.1|539722_540466_+|MurR/RpiR-family-transcriptional-regulator
MNHLTSVEIYIWNYLEENKAKIIQMTVAQIAESAHVSPSSIIRTLKKKNFSGFSEYKNMEKQKLNRHDWIYGLTKDANQVVSENIEELLMTVRLLESENLAKVVENIFHAASVVIISRGLSVRIADSFARDLQFLDVKAVSLYQDNMQAYLEKLPRNTFVIGLSLSGETDLIVATAQKAKRDGKKVLAITGNYKSRLVEQSDLLLLAYQKNLSGKILVDYNNMLPLELIIHLLIQLYKQYKEYGAIV
>NC_013656.1|WP_003130829.1|538264_539608_+|RNA-polymerase-sigma-factor-RpoD
MAANKKRISQISKETGVQNRVLVEKAQEIGLLVKSHSSSVGPGEERRLLEALNVKPVVVEKMDSPKTLARVEVKENGDTFNVKAYEKAVKSYITKRKPLGEALDEEIMDELSVKFGIVDDALEDLFKQIQDAGISIVDKDGNPSPLALVTDEIEKEEVSDTAMDEIVTNVRIDDPVRMYLKEIGRYPLISLDEETKLAEAIIAGGEGAEFAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDFM
>NC_013656.1|WP_012897280.1|536274_538188_+|DNA-primase
MVSLDTEVVNDLKSKVNIADLISQYVALSRTGKNYIGLCPFHGEKTPSFNVNAEKGFYHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDREEKNNPNAPLFEINNQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNKFDEEIMAKSGLFHFSNNKVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSATTIFDKSYELWNLDKAKPTISKQHEVYLMEGFMDVIAAYKAGINNVVASMGTALTEKHVRRLKQMAKKFVLVYDGDSAGQNAIYKAIDLIGESAVQIVKVPEGLDPDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSITAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMTITDHPVSNLEASSLTESFTDENDYSSLESVMPVDFEEAYYENNVKTQQTYRRSELARVIQPSVQVPKLSRSEKAEEMLLHRMIYHSSVLKKFSQDENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEERSLFYQIISLDLPDTASSQEINDLVSIFSNEMEQIKFEELIQQLATAEKAGNKERVLELTLQIINQKKKL
>NC_013656.1|WP_003131738.1|528127_529411_+|trigger-factor
MTVSFEKTSDTKGTLSFSIDQETIKTGLDKAFNKVKANISVPGFRKGKISRQMFNKMYGEEALFEEALNAVLPTAYDAAVKEAGIEPVAQPKIDVAKMEKGSDWELTAEVVVKPTVSLGDYKDLTVEVEATKEVSDEEVETRLTNSQNNLAELVVKETAAENGDTVVIDFVGSVDGVEFEGGKGSNHSLELGSGQFIPGFEEQLVGTKAGETVEVKVTFPENYQAEDLAGKEALFVTTVNEVKAKELPELDDELAKDIDEEVETLDELKAKFRKELEESKAEAYNDAVETAAIEAAVANAEIKEIPEEMIHEEVHRAMNEFLGGMQQQGISPEMYFQITGTSEDDLHKQYEADADKRVRTNLVIEAIAAAENFTTSDEEVKAEIEDLAGQYNMPVEQVEKLLPVDMLKHDIAMKKAVEVIATTAKVK
>NC_013656.1|WP_003131739.1|527779_527971_+|DNA-directed-RNA-polymerase-subunit-beta
MFKKTIKFLGLRLSIIIFVIVLLVLAAVLGLMVGYGFLGGGNPSNVFNHNLWKEVMDKLSPAK
>NC_013656.1|WP_033900539.1|526493_527780_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDKIIVKGGQTKLQGEVEIEGAKNAVLPLLAATLLASEGEVVLTNVPILSDVFMMNNLVNHLGTAISFDQEAKKIIAKSNSEIKTTAPYEYVSKMRASIVVMGPILARNGQARVSMPGGCSIGSRPIDLHLRGFEQMGATITQNAGYIEAKADKLKGAHIYLDFPSVGATQNLILAATLADGTTTLENAAREPEIVDLANLLNKMGANVKGAGTDTIIIKGVEKMHGANHSVVQDRIEAGTFMVAAAMTQGDVLIKDAIAEHNRPLISKLSEMGVNFTQEESGLRVVGPEKLKATSVKTLPHPGFPTDMQSQMTAAQAVAVGESVMVETVFENRFQHLEEMRRMGLEVDITRNTALIQGNSNLQGAAVKSTDLRASAALILLGLVAKGQTTVRRLSHLDRGYYKFHEKLKALGADIIRVEDEDGEGEG
>NC_013656.1|WP_080513146.1|525638_526400_+|inositol-monophosphatase-family-protein
MLTRLELAKDWVRDAGNFLKENIAAPLEITEKTRYDDLVTNFDKEVQEQIVANILHHFPEDKILAEEDEEKIKFDSEIPHLWVLDPIDGTTNFIVQKDNFAVMLAYYEYGIGKFGLILDVMKDKLYWCDSHKAFCNQKELELKERPLAQSLLGVNSYMYRSNSGGLLDLSHHTLGVRIIGSAGISYGQLLEGKIIGYFSSLQPWDYAAGSIIAERIGYVTLTISGESPHFNCRERVFTAPSYLISEIQKYIKK
>NC_013656.1|WP_012897284.1|545207_545678_-|Rrf2-family-transcriptional-regulator
MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPGKNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKATRCAITSALDEIENTLVRTLSNVSLAQVADETQYNYNLGYLDEWIDEMD
>NC_013656.1|WP_012897285.1|545850_546864_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MVVKVGINGFGRIGRLALRRIQEVEGVEVAHINDLTDPAMLAHLLKYDTTQGRFKGTVEVKEDGFDVNGKFVKVTAERNPEDIQWADSGVEIVLEATGFFATKEKAEKHLHPGGAKKVLITAPGGNDVKTVVFNTNHRILDGTETVISAGSCTTNSLAPMADALNKNFGVKGGTMTTVHSYTGDQMTLDGPHRGGDFRRARAAAENIVPASSGAAKAIGLVLPELSGLMKGHAQRVSTPTGSITELVTVLEKHVTVDEINEAMKAAADESFGYNVDEIVSSDIIGMAYGSLFDATLTEVTDLKDGGQLVKTAAWYDNEMSFTAQLIRTLEYFAKIAK
>NC_013656.1|WP_003130816.1|547006_547642_-|peptide-deformylase
MNRDEIQANLIKASHMISMDDIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQLGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLSVDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHINMNDPWEIKDGMIIVK
>NC_013656.1|WP_012897286.1|547795_548251_+|RNA-pyrophosphohydrolase
MKEYRQNVAAIILNKENKIWLGKRADGMSWGFPQGGIEAGEKPETAIIRELSEEIGTKDFEIIGQYPGTLKYDFPKEMKFPTWTYAGQEQHYFLVRLHEEAKINLESHPEEIEFSTYQFLGLSEIRKMDFGFKNDVYHQALDYFSKIIEKN
>NC_013656.1|WP_012897287.1|548261_550340_+|excinuclease-ABC-subunit-UvrB
MAIERITDNKFELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYQDSVVSLRPGQEISRDQLLNDLVGIQFERNDIDFQRGCFRVRGDIVEVFPASRDEHAFRVEFFGDEIDRIREIEVLTGQVLGEVDHLAIFPATHFMTNDDRMEESIAKIEAELEEQLKVFRSEGKLLEAQRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMTMGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQTDTIVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLTAYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVILYSDMAKALDENDPADKEILDSGYYTEYEGQKYKITRSMKHAMDETARRREIQMAYNEEHGITPQTIKKEIRDLIAITKKTDSGEIEEVDASAMTKKERKALVKKLEKEMQQAASALDFEGAAQLRDMVLELRAMD
>NC_013656.1|WP_038603163.1|550523_551345_+|transporter-substrate-binding-domain-containing-protein
MNKKMKKLALGMVGLAAVATLAACGNGKSATNQVDKVKKAGVLKVALSPDYPPFEFQIIKDGKNTIVGSDVDLANAIGKKLGVKVKIESMDFNNVLASLNTGKADIAISGISKEPSREKSVNFSDVYYTASNYLVVKKSDLSKYRSVDDFKGKKVAAQKGSTQEGIVTSQFKGATEIALPQIGDEINEVKGGQVQGAVIENLIAKSYVAANSDLAIANVDVKTPKDSYGSAVALPKGSDELTKVVNSVIKEELKNGQINKDIQKNYTLSKNNK
>NC_013656.1|WP_012897289.1|551359_552478_+|M20-family-metallopeptidase
MEKAVDLLKSLVNIPSSSGNEEEILIFLEKWFIEKQFDFVIRKETFVAGQIKAKGKKEQKKEAIILTGHVDTVVSGHLADWKFSPTDARVEEGKLFGLGASDMKGGDVGNLLAAASFIGKDLSQDIWVVGTANEELDGKGSEDFARYFSENWSYDSACCIIAEPTDLEKIYIGQRGNHFMKLHFSGKAGHASVQEHFQQSALGAVTYFLENIEQIVEDLKIYKNSQLGLPTFVVTSILSGDENSPNKTADFAELVVDCRLTPELEEVFEQVMSELAVQYHFTYEDIVTPVLSTLTDNQAPFIQLLTDLSGAKTTAASGSNDQGFFENVGIRTVVFGPGQHEQCHIANESIILEKLEEHIEILQSFIKKMQES
>NC_013656.1|WP_003130498.1|552545_553001_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MTKKYAMTATEVMEVIPNRYPIMFIDYVDEISENKIVATKNVTINEEVFNGHFPGNPTFPGVLILESLAQAGSILILKKEEFQGKMAYIGGIDKAKFRQKVTPGDVMKLEFEITKFRGKVGTADAAAYVDGKKVTTCQFTFIVDEAAEQTN
>NC_013656.1|WP_012897290.1|553276_554029_+|enoyl-ACP-reductase-FabI
MFLEGKKIVIMGVANNKSIAWGCAKAMKDQGATLIYTYQNERMEKQLAKLAEPEDLLIECDVTSDESIRRAFGTIEARVGKIDGLVHAIAYSKKEELGGNVTDISRDGYALAQDISAYSLLAVAKAAKPLLKKGSGIVTLTYMGSVRAIPNYNVMGIAKAALESTVRYLAAEMAHVGVHVNGISAGAIKTLAVSGVSGYKDLIKESDSRTADGVGVTIDEVGQTAAFLVSPLASGVIGDIVYVDKGVHLT
>NC_013656.1|WP_003130500.1|554290_554698_+|hypothetical-protein
MKLMKKTLVTLAVTLGISGALSPAVNAATKTTNASISVLNIITMADRVYFQYNGKAISTATAFQSAHSFTPTNWVTQNGISLINKNGSWGRIYQGKYTVGSGINAGKFGHVGVSFNKYIRTTILGNGQWTYSTFN

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Crispr_ID: NC_013656_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013656_2

1502985-1503099

Orphan

Consensus_repeat	Method
CTGACAATTCTTTTAGCTATCCATAAAATGCTCGCTTTGGTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013656_2

>merge|NC_013656|2|1502985-1503099|CRISPRCasFinder
CTGACAATTCTTTTAGCTATCCATAAAATGCTCGCTTTGGTCGCTAACGAACGAGAGAATTATCAGCTCCGCTGACAATTCTTTTAGCTATCGATAAAATGCTCGCTTTGGTCGC

>NC_013656|2|2|1502985-1503099|CRISPRCasFinder
CTGACAATTCTTTTAGCTATCCATAAAATGCTCGCTTTGGTCGC	TAACGAACGAGAGAATTATCAGCTCCG
CTGACAATTCTTTTAGCTATCGATAAAATGCTCGCTTTGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013656.1\|WP_012897961.1\|1500066_1501026_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_013656.1\|WP_012897964.1\|1503154_1504090_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_013656.1\|WP_012897960.1\|1499141_1499549_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NC_013656.1\|WP_003131089.1\|1499545_1500076_+\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|227110
NC_013656.1\|WP_012897969.1\|1509084_1509639_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274398
NC_013656.1\|WP_012897965.1\|1504162_1504951_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NC_013656.1\|WP_012897962.1\|1501754_1502219_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225613
NC_013656.1\|WP_010905895.1\|1496243_1496870_-\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	unknown	unknown	gnl\|CDD\|227252
NC_013656.1\|WP_012897972.1\|1511456_1512776_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NC_013656.1\|WP_012897973.1\|1512890_1513817_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381624
NC_013656.1\|WP_003131091.1\|1501022_1501739_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NC_013656.1\|WP_012897958.1\|1497061_1498087_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NC_013656.1\|WP_012897966.1\|1505349_1506714_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|341046
NC_013656.1\|WP_012897959.1\|1498129_1499071_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NC_013656.1\|WP_012897970.1\|1509635_1510472_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_013656.1\|WP_012897968.1\|1507664_1509092_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NC_013656.1\|WP_003131084.1\|1494920_1496099_-\|toxic-anion-resistance-protein	unknown	unknown	gnl\|CDD\|377557
NC_013656.1\|WP_038603869.1\|1510471_1511383_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_013656.1\|WP_012897963.1\|1502220_1502934_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NC_013656.1\|WP_012897967.1\|1506876_1507593_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099

Protein	Function_ID	Function_description	E-value
NC_013656.1\|WP_012897961.1\|1500066_1501026_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	5.93919e-83
NC_013656.1\|WP_012897964.1\|1503154_1504090_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	0
NC_013656.1\|WP_012897960.1\|1499141_1499549_+\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	7.84966e-52
NC_013656.1\|WP_003131089.1\|1499545_1500076_+\|Gx-transporter-family-protein	gnl\|CDD\|227110	COG4769, COG4769, Predicted membrane protein [Function unknown].	1.74231e-64
NC_013656.1\|WP_012897969.1\|1509084_1509639_-\|hypothetical-protein	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	0.008284
NC_013656.1\|WP_012897965.1\|1504162_1504951_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	1.30532e-108
NC_013656.1\|WP_012897962.1\|1501754_1502219_-\|hypothetical-protein	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	0.000170438
NC_013656.1\|WP_010905895.1\|1496243_1496870_-\|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein	gnl\|CDD\|227252	COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only].	2.19745e-89
NC_013656.1\|WP_012897972.1\|1511456_1512776_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.9671e-32
NC_013656.1\|WP_012897973.1\|1512890_1513817_-\|hypothetical-protein	gnl\|CDD\|381624	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins. Family 113 glycoside hydrolases cleave (1->4)-beta-glycosidic linkages, such as endo-1,4-beta-mannanase. This family also includes TIM-barrel domains found in gene transfer agent proteins.	1.05227e-94
NC_013656.1\|WP_003131091.1\|1501022_1501739_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	2.20408e-85
NC_013656.1\|WP_012897958.1\|1497061_1498087_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	6.01706e-180
NC_013656.1\|WP_012897966.1\|1505349_1506714_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.2855e-65
NC_013656.1\|WP_012897959.1\|1498129_1499071_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	4.29994e-173
NC_013656.1\|WP_012897970.1\|1509635_1510472_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.52096e-59
NC_013656.1\|WP_012897968.1\|1507664_1509092_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NC_013656.1\|WP_003131084.1\|1494920_1496099_-\|toxic-anion-resistance-protein	gnl\|CDD\|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	2.06226e-124
NC_013656.1\|WP_038603869.1\|1510471_1511383_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.84861e-70
NC_013656.1\|WP_012897963.1\|1502220_1502934_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	9.35831e-135
NC_013656.1\|WP_012897967.1\|1506876_1507593_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.82476e-68

>NC_013656.1|WP_012897963.1|1502220_1502934_-|orotidine-5'-phosphate-decarboxylase
MQENRPVIALDFPEFSDVKDFLEKFDPSEQLYIKLGMELFYTAGPQVVYYVKSLGHSVFLDLKLHDIPNTVESSMRVLARLGVDMVNVHAAGGVEMMVAAKRGLEAGTPVGRQRPKLIAVTQLTSTSEEIMQNDQKIMTSLEESVINYAQKTAQAGLDGVVCSAHEVEKIKAATSKEFICLTPGIRPEGASKGDQKRVMTPKEARTIGSDYIVVGRPITQAKDPVASYHAIKAEWNQ
>NC_013656.1|WP_012897962.1|1501754_1502219_-|hypothetical-protein
MKKLLHFLVVLLGIFVAFILARLFIEIYTIVGDVYLQVDNKTITLYKVLAEIDYLSVGITFAMVFAYMLLLDLIVVVVVRSWFKIQNKSQKQSQKVWKNKFTKFWFRYRSIHITFILLSIFTSLSLTAPAMVMNSFTAIVSISVLVINLSKKIG
>NC_013656.1|WP_003131091.1|1501022_1501739_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTPDEFLSALTEFDIQLSDKQIKQFERYFELLVEWNEKINLTAITEKNEVYLKHFYDSIAPILYGLITDQPVSILDIGAGAGFPSLPMKIIFPELKVTIIDSLNKRINFLSLLTEELGLENVTLLHGRAEDFGQDANYRGTFDFVTARAVARLSVLTEFTIPFLKKNGILLSLKAAQFEEELNDAKKAIATLGGKFIKEVAYELPNGDERHIALIEKKKETPKKYPRKAGTPAKNPIK
>NC_013656.1|WP_012897961.1|1500066_1501026_+|polyprenyl-synthetase-family-protein
MDLKNNFWKDYPELEKELVQVQQLMKSHVTIKNSDVKSAIFDIFDAGGKMLRPAYLLLFSGFTVLSENERLALAASVEMMHIATLVHDDVIDHADTRRGVATLSAKYGPEIAVYAGDYLFIAVFRLMSEHSLELSNLTKNIGSIERLLGGELGQLNHHFNLQQTLDDYIENISGKTGELFALSASVAPLISKNNTLTKRAYKIGMNIGISFQIMDDYLDYASTAQTLGKPVLEDIKQGIYSAPVLFALQENNALVSELIKNEKFDEVYDFIKTSDALEKTKALAKSYTLSALNLIDKLPKGKNRELIAEITRKLLERTL
>NC_013656.1|WP_003131089.1|1499545_1500076_+|Gx-transporter-family-protein
MNIKEYVYVSLLTAAAVVMGIIESSLPPFFAFAPGAKVGLANLVMIIAVFTLRWRQVWVMQILRLLITALFTGFSVFLYSFAGGILSLLAMYLMKQFGPKLVSMIGISTVGGFFHNFGQLAMASLLAKTTSVMLYLPWLAFFGILAGFAIGIAGNQLITRVKPIQELFIKESKQWT
>NC_013656.1|WP_012897960.1|1499141_1499549_+|NusG-domain-II-containing-protein
MNFFKNTVNFFKSIKTKPLDFVIIFLLFIASFSTLFFFATGSKGAQAELRISGKVIKTFDLNKNQTWTYRDKDGDYNKIQVKNGEIAVVEANCKDQIDVQRGYISKTGETIVCLPHNLVIEVMSGQKDEQVDYKV
>NC_013656.1|WP_012897959.1|1498129_1499071_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKQSTIPTKARKVRKAVIPAAGLGTRFLPATKAIAKEMLPIVDKPTIQFIVEEALKSGIEDILIVTGKAKRPIEDHFDSNIELEQNLLEKGKTELLKLVEETTDINLHFIRQSHPKGLGHAVLQAKAFVGNEPFVVMLGDDLMNITGNETPLTKDLINDYEKTHASTIAVMKVPHDDVDKYGVIDPNGEVSKGLYNVERFVEKPNVDEAPSDLAIIGRYLLTPEIFDVLETQVPGAGNEIQLTDAIERLNKTQRVFAHEFTGKRYDVGDKLGFVETTIEYGLEHPQIGANLKNYIIEKAKELSKDDSKNITKK
>NC_013656.1|WP_012897958.1|1497061_1498087_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MNPQKIAVLGPGSWGTALSQVLNDNGHEVRIWGNNPEQMAEINEKHTNTRYFKDVVLDEKIKAFDRLDLALEDVDAILFVVPTKVTRLVAKQVAEVLKHKVHILHASKGLEQGTHERISTILEEEIPAQLRGEIVVVSGPSHAEETIVRDITLISAASKDHDEAKYAQAIFSNDYFRLYTNTDVVGVETAGALKNIIAVGAGALHGLGFGDNAKAAIITRGLAEITRLGVAMGAEPLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGEKLADIEKNMGMVIEGVSTTKAAFELAQQLDIDMPITETIYKVLYENLDAKTGILDIMRRETRAENEFINNK
>NC_013656.1|WP_010905895.1|1496243_1496870_-|5-bromo-4-chloroindolyl-phosphate-hydrolysis-family-protein
MPVSLFMNHQDMMFGYGHLGIVNVIFGLVLFFLIIKMIIGISFMRKNPDEREEGYKDKGMSKKENIERYHEAGLSDTDIKIFRENLSEAKENIKTWEKLLKKEDDLQVVESVTGGLEASKQTFKYIVQNPQELTKQNEFLYKDLPNMVKLSEKFIEMKKQSVRTEEINRDLDETLLLIKTLSHSISKNYHEILMDDVNVIKHQVDFDK
>NC_013656.1|WP_003131084.1|1494920_1496099_-|toxic-anion-resistance-protein
MDNPILDDLMTNDKVIKEAEQLDEQQKSEIVKMHEKASLAAVEVLSTEELEKAKELSKQLDESSAQSVINYGASAQDKISAFSQSVLNKVQAQDLGEVGSSLTDLMFNLQQANPNELVAENKGIFTKMFGKVKRSIFEVTQKYQKIGAGIDKISAKLNNEQQGLLQDNEMLDKLYDENLNYFKALNVYIAGAELKVQELDTEIIPQARKEAQDSTDNALIVQKVNDLESYKNRLEKRAHDLRLARQLTIQQAPQIRLIQNTNQELAEKIQTSINTAIPLWKNQVAIALTLLKQKDALTSQRIVSETTNDLLRKNSEMLKASTIEAATENERGLVDIETLKLTQQNLVDTIQETMRIQAEGRQKRQQGEVELSKMEEEIKEKLLQLSNNKQLN
>NC_013656.1|WP_012897964.1|1503154_1504090_-|dihydroorotate-dehydrogenase
MTENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMAEKLPWLNENFPDLPIIANVAGSEEDDYVAVCAKIGDAPNVKAIELNISCPNVKHGGQAFGTDPDVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRKPVLANITGGLSGPAIKPVALKLIHQVAQVVDIPIIGMGGVESAQDVLEMYMAGASAVAVGTANFADPFVCPKIIEKLPEVMDQYGIDSLENLIQEVKNSKK
>NC_013656.1|WP_012897965.1|1504162_1504951_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MPKLQEMMTIVSQREVASNIFEMVLKGELVEEMDLPGQFLHLAVPNANMLLRRPISISSWDKVAKTCTILYRIGDETSGTYEISKLQTGAKIDVMGPLGNGFPVDEVVSTDKILIVGGGIGVPPLYELAKQLEEKNCQMTILLGFASEKVKILEKEFAELKNVSLKIATDDGSYGTKGHVGMLMEEVDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDENHALKVCEDGPVFLGKQLSL
>NC_013656.1|WP_012897966.1|1505349_1506714_-|multidrug-efflux-MFS-transporter
MNKNNHFHLLGAVIATGILSFSGVLIETAMNVTFPTLINEFGLSTSKIQWVTTIYLLVIAITIPLSSYFNERFSARKLFLVANLIFLVGVLTNCFSPNFAMLLFGRLLQGVGTGIGLPLMFHLILTKAPLHKRGMMMGIGTLTTSIAPAIGPTYGGIISNSLDWRYIYIFLLPLVVISLVLGLACLPREGAKTPKKLALRPVIALSIMFFAFISALSAEHLMTFALLFIVGLVGAFLFVQFNRKESLIDLGILKNHRFVALIFSLLVYQALLLGLSFVLPSFIQVSAGFSSSVAGLFMFPGALIGAVLAPISGKVLDQIGARKPITTGLILATLGLALLFVFLPTKSLALLLVAHIVLMLGLGISYSNLMTCSLSTLATDQLSDGNALVNTLQQFIGAVATAVVATTLSIFQGLNGFKVGTSHGTSIILALFFILIIVSLIVSFPNLKKIRANH
>NC_013656.1|WP_012897967.1|1506876_1507593_-|GntR-family-transcriptional-regulator
MNKYAKIRNDVRNKIISGKYKPGTLLPKESEMIMKYSASKLTIKKAMDELVNEGLIVKRRGSGTFVKGLSTEDIEKLKVVNQFQGSSAFFADKVVESRILVFEVVKSEPEIMERLGLSEVSDLYHVVRTRLIDGEPYVIESTYMPVDLIKNLTFEICSGSIYEYIEDELGLTIGSAHRRIEARKGTDEELTELGGEFGDPIVLVSQVGYLSDGRTFEFSTNVHRYDKYAFETVLMHKN
>NC_013656.1|WP_012897968.1|1507664_1509092_-|glycoside-hydrolase-family-1-protein
MTKLIFPKEFWWGAATSGPQTEGRFKKKAANIFDYDFEKFPEHFWQGIGPDMASNFYNDFREDIKLMKKAGLNSVRTSIQWSRLIDDLEEGTVNQDAVDFYNAVIDEFIANGIRPVINLHHFDLPVDLLHKYGGWTNKHVITLYVKFAEQCFKLFSDRVSDWFTHNEPMVVVEGGYLYQFHYPDLVDGKLAVQVAYNLQLASSLAIQKFHEINQNPNGKIGIVLNLSPNYPASEDKKDIAAAHIADLWQNQLFMDASVKGEFPKELVEILTKDKVIWQSTKEELAIIKNNKVDRLGVNYYHPNRAQKPYYSPDSLAIDWLPNKYFANYQMLGARMNVDKGWEIYPRALYEIAKNIQENYDNIPWFVSECGMGVSNEERYLNEEGQIDDDYRIQFIQEHLYWLHQAIEEGSSCFGFHLWTPIDCFSWRNSYRNRYGLISVNIHTQEKTLKKSAYYFKNLAEHSVLELSEEFFDKFN
>NC_013656.1|WP_012897969.1|1509084_1509639_-|hypothetical-protein
MKVSGFIWFVQQVYMIIIASLMFWLNFLLGFVFLGTTFSFKRTFAYIEGTYYDKYHERTKEVKLKFEWSNLILLFTVGVFILASHFPLSNLSTFLILVSLAYFVLTLIYIIFKTYYRLEKFTDVMQKLMRNWTMAIYSLMLIILAIFLTGFNRVWFLFFIPGLFCKMIDISFKHLDKKKVKIND
>NC_013656.1|WP_012897970.1|1509635_1510472_-|carbohydrate-ABC-transporter-permease
MNKTNKKVFHIGDVLKYIPLVLAAIVAVLPLLVVFIGSFKSMTEFTNSGVLTLPKHFSIDNYTKAFTEGNMLTGFKNTVIIFVVSMVGQLLISSSFAYVMNRFEFRLKRLILALFTIAMLIPAITSQVAVFQLVNKLGLVGTRWSVIILYIGTNVIALYIFLQFLQEIPYSLDESALLDGASYFRIFWSIILPNLKAPIVTMVIISGVGVYNDFYNPYLYMPDPSLQVISTALFAFKGSSVVQWPVILAGVMIVIIPILIVFIVLQKYIYNGVTGAVK
>NC_013656.1|WP_038603869.1|1510471_1511383_-|sugar-ABC-transporter-permease
MLEVLILSKLSQKAQKRLIIFSFTIVPIVLLLMFSYYPLVKMVQYSLTDWNGISPSSNYVGFANYEKVFSNPNYFGVFKTSLYYFLSSFPQLGLALLFATILSFKVKFTNFWKGILFFPYLLNGVAIGFMFLYFYKTGGTLDSLLHLFGIHHLPLWLGNQSINNISLSFVSIWRYMGFNFLIFLGAIQSVDPEIYEAAEIDGANRWNQFRYIIIPAIRNILFLNIILSVSGSLSVFEVPYIMTGGANGTMTFVIQTVQTAFNYNQVGLASAMAVILLIIVVLVSAAQFILTQDRSDAKKKAGA
>NC_013656.1|WP_012897972.1|1511456_1512776_-|carbohydrate-ABC-transporter-substrate-binding-protein
MKKRYIFGSLAITGLAALTLAACGSKTSSSGTGKNIKATITFVNQKTDMHSNGMWKKYIAEFNKEYPNITIKEQALNNYDQTEQTRMSSKNFGDVVAIPAAVAPKDYPNFFSSLGKTKDLEKKYTSLQDRTYKGEQYGLPSEVNANGFVVNWNVFKKAGIDKWPTTTDEFIQDLKTIKAKLPDVTPLYTNYACGWALVDWDFQRSSVAGDPNFDLALAKTDRPFTVGQPMYTIYNTLYTAAKDGLINHDPTTDDWNTSVSQMAKNKVAVMMLATWAVPQVQSQMSSNKDAINVEPFPQTAPDGKTYMLVGGDYNWGVNKNSKNQEAAKDWVNWLVDKSDFAKDNGGMTAMKNQPYPTDLNDAKKNGVVFFEAGSTPADKADLFSNINNGSQVGIGTTQTVKQQIIDSGVGSSKKSFASIMDGLNTAWSQNVKQYNPDKK
>NC_013656.1|WP_012897973.1|1512890_1513817_-|hypothetical-protein
MKAIKAASFGYYAKSGELNNDYAQWSMKTLKERTNINTIVLTIVAEQANAHATSINWQTMPPKDEEVKATIRYAQSLGLDVILKPMINCTDGTWRAYINFFDIDVVCEPKWSDWFAVYTEFQLHYAKIAQECEATMFVVGCELVSSDHREKEWRKLIDDVREIYKGLITYNCDKYQENHLTWWDAVDVISSSGYYPFDQWDKELRRIEKVIKKYDKPFFFCEAGAPSIDGGDLLPNDWTIKGEVNLEAQTRYYKGMLTACAKVDFVLGFGLWDWKAQVYSEDQARFDKDYAFYNKPAEKLIKDYYDKP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

210093 : 217856

Catovirus(33.33%)

holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012897045.1\|210093_210930_+\|holin	phosphorylcholine transferase LicD	A0A1V0SAS8	Catovirus	1.3e-06	31.6
WP_012897046.1\|210919_211921_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.6e-10	32.6
WP_012897047.1\|211922_212810_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012897048.1\|212806_214033_+	glycerophosphoryl diester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	4.0e-33	37.6
WP_012897049.1\|214043_214481_+	glycerol-3-phosphate cytidylyltransferase	A0A221SAS8	Streptomyces_phage	4.3e-14	39.3
WP_012897050.1\|214608_215991_-	family 25 glycosyl hydrolase	Q71JA9	Lactobacillus_phage	1.6e-09	31.6
WP_003129822.1\|216374_217856_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.1e-97	41.3

DBSCAN-SWA_2

269043 : 276097

Lactococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012897089.1\|269043_271287_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	2.0e-272	63.0
WP_025016575.1\|271283_271889_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	2.7e-51	55.3
WP_012897090.1\|271997_272504_-	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_012897091.1\|272794_274084_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.3e-122	56.1
WP_012897092.1\|275085_275286_+	hypothetical protein	Q9AZK6	Lactococcus_phage	3.3e-06	55.8
WP_012897093.1\|275416_275617_+	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	6.3e-13	50.8
WP_011835124.1\|275896_276097_+	cold-shock protein	Q9AZD3	Lactococcus_phage	2.4e-28	93.9

DBSCAN-SWA_3

439759 : 451892

Streptococcus_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003131595.1\|439759_440077_+	thioredoxin family protein	A0A0K2FIM3	Achromobacter_phage	4.5e-05	30.4
WP_012897224.1\|440162_440789_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_012897225.1\|440951_442292_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012897226.1\|442382_442772_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	1.1e-24	45.8
WP_003131589.1\|442891_443176_+	co-chaperone GroES	A0A221S386	uncultured_virus	3.1e-13	44.1
WP_012897227.1\|443263_444892_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.3e-156	56.8
WP_012897228.1\|444938_445751_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	4.1e-34	38.1
WP_012897229.1\|445921_447364_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.4e-32	33.0
WP_003131580.1\|447356_448058_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-42	39.7
WP_012897230.1\|448235_448871_+	dTMP kinase	M1PSC7	Streptococcus_phage	5.4e-74	65.0
WP_012897231.1\|449003_449864_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.3e-66	44.8
WP_012897232.1\|449915_450698_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_011675472.1\|450690_451017_+	DNA replication initiation control protein YabA	NA	NA	NA	NA
WP_012897233.1\|451016_451892_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.6e-99	65.4

DBSCAN-SWA_4

1036430 : 1098328

Lactococcus_phage(69.12%)

terminase,portal,tail,capsid,integrase

attL 1034624:1034639|attR 1076285:1076300

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1034624:1034639	attL	NA	NA	NA	NA
WP_003130964.1\|1036430_1037123_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.7e-31	34.4
WP_012897609.1\|1037115_1038051_+	ABC transporter permease	NA	NA	NA	NA
WP_012897610.1\|1038152_1039130_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.9e-118	66.0
WP_012897611.1\|1039507_1041676_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	6.6e-257	61.0
WP_003130968.1\|1041811_1042234_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.3e-12	37.3
WP_012897612.1\|1042235_1042454_-	redoxin NrdH	C3U2K9	Lactococcus_phage	7.6e-12	47.6
WP_012897613.1\|1042627_1043266_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012897614.1\|1043540_1045475_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.1e-125	43.5
WP_012897615.1\|1046210_1047044_+	3'-5' exonuclease	A0A0K2SUJ2	Clostridium_phage	3.1e-21	39.4
WP_003130977.1\|1047040_1047490_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003130980.1\|1047764_1050239_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.2e-98	32.2
WP_003130981.1\|1050264_1051170_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_012897616.1\|1051638_1052727_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.9e-50	38.8
WP_012897617.1\|1052726_1053377_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.4e-42	43.1
WP_012897618.1\|1053385_1054582_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.2e-112	51.3
WP_012897619.1\|1054609_1055074_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-39	53.7
WP_012897620.1\|1055176_1055629_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_003130995.1\|1055689_1056595_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	5.4e-11	28.2
WP_012897621.1\|1056742_1057186_+	divergent PAP2 family protein	NA	NA	NA	NA
WP_012897622.1\|1057325_1058948_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_012897623.1\|1058950_1059907_+	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	4.0e-49	37.5
WP_012897624.1\|1060032_1060719_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.9e-32	33.6
WP_003131889.1\|1060738_1061254_+	DUF2127 domain-containing protein	NA	NA	NA	NA
WP_003131891.1\|1061257_1062583_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.4e-22	27.5
WP_012897625.1\|1062589_1063246_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_012897626.1\|1063426_1065244_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HVL7	Paramecium_bursaria_Chlorella_virus	5.1e-93	36.9
WP_012897627.1\|1065374_1066055_+	DNA repair protein RadC	NA	NA	NA	NA
WP_012897628.1\|1066253_1067378_-\|integrase	site-specific integrase	A0A1B1IME4	Lactococcus_phage	7.0e-210	98.1
WP_012897629.1\|1067504_1067996_-	hypothetical protein	A0A1B1IMF9	Lactococcus_phage	4.9e-43	91.0
WP_012897630.1\|1068053_1068254_-	hypothetical protein	A0A1P8BMQ1	Lactococcus_phage	2.8e-29	97.0
WP_012897631.1\|1068265_1068829_-	hypothetical protein	Q9T1Y9	Lactococcus_phage	7.4e-59	63.6
WP_012897632.1\|1068857_1069205_-	XRE family transcriptional regulator	A0A1P8BMR9	Lactococcus_phage	5.9e-35	63.5
WP_012897633.1\|1069504_1069729_+	hypothetical protein	NA	NA	NA	NA
WP_012897634.1\|1069742_1070075_+	DUF771 domain-containing protein	Q38331	Lactococcus_phage	3.2e-54	92.7
WP_012897635.1\|1070076_1070325_+	hypothetical protein	A0A059NT64	Lactococcus_phage	1.1e-35	98.8
WP_012897636.1\|1070321_1070498_+	putative transcriptional regulator	A5GZ44	Lactococcus_phage	2.8e-25	98.3
WP_012897637.1\|1070576_1070816_+	phage protein	NA	NA	NA	NA
WP_012897638.1\|1070827_1071649_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	4.0e-13	28.8
WP_012897639.1\|1071666_1072479_+	phage replisome organiser protein	C9E2N2	Enterococcus_phage	5.6e-52	81.2
WP_012897640.1\|1072475_1073219_+	hypothetical protein	A0A1P8BLT1	Lactococcus_phage	1.4e-44	43.3
WP_012897641.1\|1073215_1073386_+	hypothetical protein	Q8LTN0	Lactococcus_phage	5.3e-05	58.5
WP_012897642.1\|1073802_1073994_+	DUF1497 domain-containing protein	A0A1P8BKF9	Lactococcus_phage	4.4e-16	75.0
WP_012897643.1\|1073974_1074541_+	DUF658 family protein	Q9MCB2	Lactococcus_phage	6.3e-42	49.7
WP_012897644.1\|1074544_1075054_+	hypothetical protein	Q9AZU7	Lactococcus_phage	1.2e-12	97.4
WP_012897645.1\|1075062_1075269_+	DUF1125 domain-containing protein	Q9MC26	Lactococcus_phage	9.9e-30	98.5
WP_012897646.1\|1075261_1075852_+	DUF1642 domain-containing protein	Q9AZU5	Lactococcus_phage	1.9e-33	54.0
WP_012897647.1\|1075848_1076133_+	hypothetical protein	Q9AZU4	Lactococcus_phage	7.0e-26	64.6
WP_012897648.1\|1076129_1076408_+	hypothetical protein	Q9AZU2	Lactococcus_phage	1.3e-27	72.5
1076285:1076300	attR	NA	NA	NA	NA
WP_012897650.1\|1076527_1076965_+	hypothetical protein	Q9MBV6	Lactococcus_phage	4.7e-05	43.7
WP_012897651.1\|1076961_1077735_+	DNA methyltransferase	U4KJA1	Streptococcus_phage	6.0e-104	68.5
WP_012897652.1\|1077781_1078075_+	hypothetical protein	A0A182BQA3	Lactococcus_phage	5.0e-51	95.9
WP_041167884.1\|1078071_1078290_+	DUF1660 domain-containing protein	A0A182BQA2	Lactococcus_phage	3.2e-34	94.5
WP_012897653.1\|1078298_1078640_+	hypothetical protein	M1NRW0	Streptococcus_phage	2.0e-27	55.0
WP_012897654.1\|1078766_1078973_+	hypothetical protein	A0A1X9IGG2	Lactococcus_phage	1.9e-20	76.5
WP_012897656.1\|1079118_1079475_+	hypothetical protein	A0A1W6JKT3	Lactococcus_phage	5.5e-28	57.4
WP_012897657.1\|1079467_1080226_+	site-specific DNA-methyltransferase	W8EBG5	Geobacillus_phage	3.9e-79	56.4
WP_012897658.1\|1080222_1080558_+	DUF1140 family protein	A0A1B1IMW5	Lactococcus_phage	1.8e-49	90.0
WP_012897659.1\|1080576_1080795_+	hypothetical protein	Q8LTS0	Lactococcus_phage	3.2e-34	94.4
WP_041167886.1\|1080791_1080953_+	DUF1660 domain-containing protein	A0A1P8BKU8	Lactococcus_phage	4.3e-20	83.0
WP_148210847.1\|1080949_1081129_+	hypothetical protein	Q94M82	Lactococcus_phage	2.1e-23	94.9
WP_012897661.1\|1081164_1081350_+	hypothetical protein	Q8LTR8	Lactococcus_phage	5.2e-14	65.6
WP_012897662.1\|1081346_1081661_+	hypothetical protein	A0A1P8BL62	Lactococcus_phage	3.7e-20	90.9
WP_012897663.1\|1081748_1082174_+	transcriptional regulator	O64272	Lactococcus_phage	3.9e-28	43.4
WP_041167888.1\|1082302_1082635_+	HNH endonuclease	O64273	Lactococcus_phage	1.5e-59	98.2
WP_012897665.1\|1082781_1084206_+\|portal	phage portal protein	O64275	Lactococcus_phage	1.7e-229	97.5
WP_012897666.1\|1084208_1084973_+	hypothetical protein	Q38114	Lactococcus_phage	2.6e-139	96.4
WP_187287189.1\|1084975_1085125_+	hypothetical protein	NA	NA	NA	NA
WP_012897667.1\|1085175_1086585_+\|terminase	terminase	A0A1P8BMS5	Lactococcus_phage	4.9e-277	98.9
WP_012897668.1\|1086657_1087122_+	DUF4355 domain-containing protein	A0A1P8BMT3	Lactococcus_phage	1.9e-76	96.8
WP_012897669.1\|1087126_1088023_+\|capsid	phage major capsid protein	A0A1P8BMT8	Lactococcus_phage	2.1e-156	93.0
WP_012897670.1\|1088034_1088334_+	hypothetical protein	A0A1P8BKC8	Lactococcus_phage	4.9e-46	96.0
WP_012897671.1\|1088335_1088734_+	phage Gp19/Gp15/Gp42 family protein	A0A1P8BMQ2	Lactococcus_phage	2.8e-65	97.7
WP_032398985.1\|1088720_1089059_+	hypothetical protein	A0A1B1IMZ5	Lactococcus_phage	2.3e-60	99.1
WP_004254320.1\|1089051_1089288_+	hypothetical protein	A0A1P8BMT2	Lactococcus_phage	4.8e-36	100.0
WP_012897673.1\|1089288_1089624_+	hypothetical protein	A0A1B1IMY2	Lactococcus_phage	6.8e-52	96.4
WP_012897674.1\|1089634_1090198_+	hypothetical protein	A0A1P8BMS0	Lactococcus_phage	3.5e-93	94.6
WP_041167891.1\|1090148_1090538_+	hypothetical protein	NA	NA	NA	NA
WP_012897676.1\|1090548_1090809_+	hypothetical protein	A0A1P8BMR6	Lactococcus_phage	7.3e-38	95.3
WP_012897677.1\|1090823_1091198_+	DUF5361 domain-containing protein	A0A1P8BMT6	Lactococcus_phage	8.6e-64	99.2
WP_012897678.1\|1091197_1093780_+	hypothetical protein	A0A1B1IMY1	Lactococcus_phage	1.1e-255	95.6
WP_148210854.1\|1093829_1095314_+\|tail	phage tail family protein	A0A1P8BMP1	Lactococcus_phage	4.9e-219	76.6
WP_012897680.1\|1095313_1098328_+\|tail	phage tail protein	A0A1P8BKD5	Lactococcus_phage	0.0e+00	70.8

DBSCAN-SWA_5

1496243 : 1596105

108

Lactococcus_phage(80.77%)

protease,terminase,holin,head,portal,lysis,capsid,tail,integrase

attL 1522670:1522688|attR 1600686:1600704

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010905895.1\|1496243_1496870_-\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	NA	NA	NA	NA
WP_012897958.1\|1497061_1498087_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_012897959.1\|1498129_1499071_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	2.2e-79	52.2
WP_012897960.1\|1499141_1499549_+	NusG domain II-containing protein	NA	NA	NA	NA
WP_003131089.1\|1499545_1500076_+	Gx transporter family protein	NA	NA	NA	NA
WP_012897961.1\|1500066_1501026_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_003131091.1\|1501022_1501739_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_012897962.1\|1501754_1502219_-	hypothetical protein	NA	NA	NA	NA
WP_012897963.1\|1502220_1502934_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_012897964.1\|1503154_1504090_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_012897965.1\|1504162_1504951_-	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
WP_012897966.1\|1505349_1506714_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_012897967.1\|1506876_1507593_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012897968.1\|1507664_1509092_-	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_012897969.1\|1509084_1509639_-	hypothetical protein	NA	NA	NA	NA
WP_012897970.1\|1509635_1510472_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_038603869.1\|1510471_1511383_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_012897972.1\|1511456_1512776_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012897973.1\|1512890_1513817_-	hypothetical protein	NA	NA	NA	NA
WP_012897974.1\|1513916_1514855_+	acetylxylan esterase	NA	NA	NA	NA
WP_012897975.1\|1515021_1516233_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_012897976.1\|1516392_1517532_+	ATP/GTP-binding protein	NA	NA	NA	NA
WP_012897977.1\|1517528_1518314_+	TPM domain-containing protein	NA	NA	NA	NA
WP_025017118.1\|1518343_1518880_-	rRNA large subunit pseudouridine synthase E	NA	NA	NA	NA
WP_012897979.1\|1519315_1522510_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
1522670:1522688	attL	NA	NA	NA	NA
WP_012897980.1\|1522821_1523295_-	glutathione peroxidase	NA	NA	NA	NA
WP_012897981.1\|1523477_1524107_+	glycoside hydrolase family 73 protein	A0A0K2CP65	Brevibacillus_phage	2.3e-29	47.0
WP_012897982.1\|1524147_1526784_-	cation-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	4.5e-90	30.8
WP_023189145.1\|1527042_1527765_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_012897983.1\|1527985_1528555_-	hypothetical protein	NA	NA	NA	NA
WP_144242122.1\|1528695_1529529_-	hypothetical protein	NA	NA	NA	NA
WP_012897984.1\|1530061_1530616_+	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_012897985.1\|1530797_1531556_+	pilus protein	NA	NA	NA	NA
WP_012897986.1\|1531619_1531973_-	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_003130484.1\|1532069_1532498_-	universal stress protein	NA	NA	NA	NA
WP_012897987.1\|1532617_1532779_-	hypothetical protein	NA	NA	NA	NA
WP_143464183.1\|1534178_1534385_-	hypothetical protein	NA	NA	NA	NA
WP_038603499.1\|1536096_1536468_+	membrane lipoprotein lipid attachment site-containing protein	NA	NA	NA	NA
WP_012897989.1\|1537752_1538244_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012897990.1\|1538810_1539215_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	2.2e-28	48.8
WP_012897991.1\|1539305_1539665_-	YxeA family protein	NA	NA	NA	NA
WP_012897992.1\|1539767_1540046_-	hypothetical protein	NA	NA	NA	NA
WP_012897993.1\|1540134_1540644_-	hypothetical protein	NA	NA	NA	NA
WP_012897995.1\|1542409_1542631_-	hemolysin XhlA family protein	A0A191KBQ1	Streptococcus_virus	1.5e-20	65.3
WP_012897997.1\|1543479_1543617_-	hypothetical protein	NA	NA	NA	NA
WP_012897999.1\|1546703_1547129_-	universal stress protein	NA	NA	NA	NA
WP_012898001.1\|1547556_1548228_-	hypothetical protein	NA	NA	NA	NA
WP_012898002.1\|1548231_1548627_-	hypothetical protein	NA	NA	NA	NA
WP_012898003.1\|1548616_1549480_-	ParA family protein	A0A1X9IGI7	Lactococcus_phage	1.9e-29	37.9
WP_012898004.1\|1549633_1550038_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	3.1e-27	48.1
WP_012898005.1\|1550129_1551044_-	lysozyme	Q8LTJ6	Lactococcus_phage	5.8e-146	87.9
WP_012898006.1\|1551053_1551515_-\|holin	phage holin	Q8LTJ7	Lactococcus_phage	5.3e-47	90.7
WP_012897681.1\|1551516_1551819_-	hypothetical protein	NA	NA	NA	NA
WP_012898007.1\|1551838_1555087_-\|tail	phage tail protein	Q9AZL2	Lactococcus_phage	1.5e-308	47.7
WP_012898008.1\|1555086_1556619_-\|tail	phage tail family protein	Q9AZR9	Lactococcus_phage	1.9e-279	94.7
WP_012898009.1\|1556618_1561538_-\|tail	phage tail tape measure protein	Q9AZS0	Lactococcus_phage	0.0e+00	94.9
WP_012898010.1\|1561613_1562291_-	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_012898011.1\|1562520_1562937_-\|tail	phage tail assembly chaperone	Q8LTK3	Lactococcus_phage	3.9e-65	97.8
WP_012898012.1\|1563049_1563664_-\|tail	phage tail protein	Q94MA4	Lactococcus_phage	2.7e-91	87.5
WP_012898013.1\|1563694_1564090_-	DUF806 family protein	Q8LTK5	Lactococcus_phage	3.7e-65	96.9
WP_012898014.1\|1564086_1564593_-	HK97 gp10 family phage protein	Q94MA6	Lactococcus_phage	4.4e-87	97.6
WP_012898015.1\|1564594_1564945_-\|head	phage head closure protein	Q9AZS5	Lactococcus_phage	7.5e-54	94.0
WP_012898016.1\|1564919_1565243_-\|head,tail	phage gp6-like head-tail connector protein	Q9AZS6	Lactococcus_phage	5.0e-52	95.3
WP_012898017.1\|1565258_1566488_-\|capsid	phage major capsid protein	Q8LTK9	Lactococcus_phage	1.2e-146	66.8
WP_012898018.1\|1566499_1567213_-\|protease	Clp protease ClpP	Q94MB0	Lactococcus_phage	1.8e-118	97.5
WP_012898019.1\|1567255_1568434_-\|portal	phage portal protein	Q77P35	Lactococcus_phage	2.1e-220	97.7
WP_041167922.1\|1568430_1568640_-	DUF1056 family protein	Q94MB1	Lactococcus_phage	1.1e-28	97.1
WP_012898021.1\|1568608_1570579_-\|terminase	terminase large subunit	Q94MB3	Lactococcus_phage	0.0e+00	99.5
WP_012898022.1\|1570568_1571045_-\|terminase	phage terminase small subunit P27 family	Q9AZT2	Lactococcus_phage	6.6e-85	99.4
WP_012898023.1\|1571172_1571688_-	HNH endonuclease	Q9AZT3	Lactococcus_phage	2.8e-97	97.1
WP_041167923.1\|1571700_1572096_-	hypothetical protein	NA	NA	NA	NA
WP_010905708.1\|1572670_1573072_-	RinA family protein	Q9AZZ1	Lactococcus_phage	5.6e-69	100.0
WP_012898025.1\|1573151_1573466_-	hypothetical protein	NA	NA	NA	NA
WP_041167924.1\|1573930_1574140_+	hypothetical protein	NA	NA	NA	NA
WP_012898026.1\|1574191_1574410_-	DUF1660 domain-containing protein	A0A182BQA2	Lactococcus_phage	4.7e-30	83.6
WP_012898027.1\|1574406_1574676_-	hypothetical protein	NA	NA	NA	NA
WP_012897651.1\|1574727_1575501_-	DNA methyltransferase	U4KJA1	Streptococcus_phage	6.0e-104	68.5
WP_012897650.1\|1575497_1575935_-	hypothetical protein	Q9MBV6	Lactococcus_phage	4.7e-05	43.7
WP_012898028.1\|1576054_1576333_-	hypothetical protein	Q9AZU2	Lactococcus_phage	2.5e-28	73.6
WP_012898029.1\|1576337_1576757_-	dUTP diphosphatase	Q9AZU3	Lactococcus_phage	9.9e-69	94.2
WP_012898030.1\|1576897_1577098_-	hypothetical protein	Q9AZ76	Lactococcus_phage	8.7e-31	97.0
WP_012898034.1\|1577961_1578159_-	hypothetical protein	NA	NA	NA	NA
WP_012898035.1\|1578167_1578677_-	hypothetical protein	Q9AZU7	Lactococcus_phage	1.3e-09	100.0
WP_012898036.1\|1578688_1579054_-	DUF658 family protein	A0A1P8BLY8	Lactococcus_phage	2.0e-57	93.4
WP_041167926.1\|1579028_1579193_-	hypothetical protein	Q9AZP4	Lactococcus_phage	5.5e-23	96.3
WP_032946700.1\|1579303_1579540_-	DUF1031 family protein	Q9AZV0	Lactococcus_phage	5.3e-35	94.9
WP_012898038.1\|1579671_1580046_-	DUF1064 domain-containing protein	Q9AZV2	Lactococcus_phage	2.9e-59	94.4
WP_012898039.1\|1580026_1580308_-	hypothetical protein	A0A1B1IM06	Lactococcus_phage	2.5e-44	97.8
WP_187287185.1\|1580291_1581170_-	phage replisome organizer N-terminal domain-containing protein	A0A1B1IMY3	Lactococcus_phage	1.9e-138	95.5
WP_012898041.1\|1581461_1582388_-	recombinase RecT	A0A1P8BKY8	Lactococcus_phage	1.3e-153	92.9
WP_012898042.1\|1582384_1583218_-	hypothetical protein	A0A1P8BKZ1	Lactococcus_phage	7.2e-119	89.5
WP_012898043.1\|1583322_1583559_-	DUF1408 domain-containing protein	Q9MC36	Lactococcus_phage	8.7e-38	96.2
WP_134794542.1\|1583863_1584082_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012898045.1\|1584190_1584481_-	hypothetical protein	Q9AZW0	Lactococcus_phage	2.7e-49	99.0
WP_012898046.1\|1584493_1585270_-	phage antirepressor KilAC domain-containing protein	A0A1P8BL41	Lactococcus_phage	2.5e-105	74.3
WP_080513132.1\|1585281_1585527_-	helix-turn-helix transcriptional regulator	Q38329	Lactococcus_phage	2.0e-21	75.7
WP_012898048.1\|1585681_1586215_+	hypothetical protein	NA	NA	NA	NA
WP_014735140.1\|1586319_1586517_-	hypothetical protein	NA	NA	NA	NA
WP_012898049.1\|1586788_1587358_+	helix-turn-helix domain-containing protein	Q9AZW3	Lactococcus_phage	7.7e-32	51.2
WP_012898051.1\|1588004_1588379_+	PH domain-containing protein	A5GYQ0	Lactococcus_phage	6.6e-56	90.3
WP_012898052.1\|1588439_1588931_+	hypothetical protein	Q9AZF8	Lactococcus_phage	2.4e-37	54.4
WP_012898053.1\|1589050_1590130_+\|integrase	site-specific integrase	Q9AZW6	Lactococcus_phage	4.2e-204	99.7
WP_003130477.1\|1590833_1591169_-	putative DNA-binding protein	NA	NA	NA	NA
WP_012898054.1\|1591352_1592063_+	response regulator transcription factor	A0A1V0SGR9	Hokovirus	2.0e-05	29.1
WP_012898055.1\|1592052_1593606_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	8.6e-33	39.1
WP_012898056.1\|1593705_1594146_+	DUF4395 domain-containing protein	NA	NA	NA	NA
WP_003130471.1\|1594153_1594861_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012898057.1\|1595052_1596105_-	BMP family protein	A0A0A7DN02	Lactobacillus_phage	2.8e-59	41.0
1600686:1600704	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1948075 : 1957933

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003130886.1\|1948075_1948837_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-17	30.0
WP_003130885.1\|1949002_1949812_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.0e-10	26.5
WP_003130884.1\|1949845_1950739_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_003130883.1\|1950738_1951662_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_012898307.1\|1951782_1952634_-	phosphate ABC transporter substrate-binding protein	E3SNT9	Prochlorococcus_phage	2.4e-05	27.3
WP_003130880.1\|1952980_1953877_-	phosphate ABC transporter substrate-binding protein	E3SM63	Prochlorococcus_phage	7.2e-08	32.4
WP_003130878.1\|1954153_1954621_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.7e-43	56.6
WP_023189734.1\|1954652_1955210_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_012898309.1\|1955314_1957933_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	5.5e-64	33.3

DBSCAN-SWA_7

2063070 : 2078008

Lactococcus_phage(88.24%)

integrase

attL 2061071:2061090|attR 2073705:2073724

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2061071:2061090	attL	NA	NA	NA	NA
WP_010906204.1\|2063070_2063991_-	DUF4065 domain-containing protein	Q9AZG0	Lactococcus_phage	1.6e-172	99.7
WP_010906205.1\|2064002_2064299_-	hypothetical protein	Q9AZG1	Lactococcus_phage	1.6e-49	100.0
WP_012898377.1\|2064487_2064709_-	hypothetical protein	Q9AZD7	Lactococcus_phage	1.6e-30	95.9
WP_012898378.1\|2064858_2065089_-	hypothetical protein	A0A1P8BME4	Lactococcus_phage	4.6e-36	93.4
WP_012898379.1\|2065231_2065738_-	GNAT family N-acetyltransferase	Q9AZG4	Lactococcus_phage	5.5e-90	99.4
WP_012898380.1\|2065900_2066071_-	hypothetical protein	Q9AZG5	Lactococcus_phage	3.1e-05	95.7
WP_021722667.1\|2066367_2066616_-	hypothetical protein	NA	NA	NA	NA
WP_012898382.1\|2066612_2066969_-	phage protein	NA	NA	NA	NA
WP_012898383.1\|2067127_2067334_-	hypothetical protein	Q9AZG9	Lactococcus_phage	2.4e-31	95.6
WP_012898384.1\|2067351_2067534_-	hypothetical protein	Q9AZH0	Lactococcus_phage	1.0e-25	96.7
WP_012898385.1\|2067893_2069591_-	hypothetical protein	Q9AZH2	Lactococcus_phage	4.1e-246	96.4
WP_012898386.1\|2069600_2069870_-	hypothetical protein	Q9AZH3	Lactococcus_phage	1.1e-39	97.8
WP_012898387.1\|2070015_2070270_-	hypothetical protein	Q9AZH5	Lactococcus_phage	2.9e-15	89.1
WP_012898388.1\|2070271_2070442_-	DUF1655 domain-containing protein	Q9AZH6	Lactococcus_phage	1.8e-24	96.4
WP_012898389.1\|2070506_2071199_-	Rha family transcriptional regulator	R9QNB1	Lactococcus_phage	7.5e-114	97.3
WP_012898390.1\|2071293_2071488_-	hypothetical protein	R9QNG3	Lactococcus_phage	2.1e-05	43.5
WP_012898391.1\|2071645_2072332_+	helix-turn-helix transcriptional regulator	O34051	Streptococcus_phage	1.4e-06	40.3
WP_012898392.1\|2072406_2073606_+\|integrase	site-specific integrase	Q9AZI0	Lactococcus_phage	2.2e-177	77.7
WP_012898393.1\|2073752_2074196_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
2073705:2073724	attR	NA	NA	NA	NA
WP_012898394.1\|2074273_2074855_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
WP_012898395.1\|2075185_2078008_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.4e-304	55.9

DBSCAN-SWA_8

2508832 : 2522182

Lactococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012898673.1\|2508832_2509027_-	hypothetical protein	Q9AZK1	Lactococcus_phage	4.3e-27	93.8
WP_012898674.1\|2509374_2509701_-	hypothetical protein	NA	NA	NA	NA
WP_012898676.1\|2510585_2510954_-	phage protein	NA	NA	NA	NA
WP_012898677.1\|2511194_2511806_-	helix-turn-helix transcriptional regulator	J9QD19	Clostridium_phage	4.6e-06	42.4
WP_012898678.1\|2511937_2512117_+	hypothetical protein	NA	NA	NA	NA
WP_012898679.1\|2512286_2512979_+	Bro-N domain-containing protein	NA	NA	NA	NA
WP_012898680.1\|2513053_2513248_+	DUF1655 domain-containing protein	Q9AZJ4	Lactococcus_phage	1.6e-26	93.8
WP_012898681.1\|2513251_2513776_+	hypothetical protein	Q9AZJ3	Lactococcus_phage	6.8e-67	75.9
WP_012898682.1\|2513772_2514054_+	hypothetical protein	Q9AZJ1	Lactococcus_phage	1.1e-44	94.6
WP_012898683.1\|2514096_2514336_+	hypothetical protein	Q9AZJ0	Lactococcus_phage	2.0e-37	93.7
WP_012898685.1\|2514585_2514780_+	hypothetical protein	Q9AZE8	Lactococcus_phage	3.9e-28	98.4
WP_012898686.1\|2514766_2515096_+	hypothetical protein	Q9AZI7	Lactococcus_phage	3.5e-53	91.7
WP_012898687.1\|2515099_2515894_+	bifunctional DNA primase/polymerase	Q9AZI6	Lactococcus_phage	1.7e-146	92.0
WP_012898688.1\|2515904_2517533_+	DNA primase	Q9AZI5	Lactococcus_phage	7.8e-303	94.1
WP_012898689.1\|2517758_2518298_+	hypothetical protein	Q9AZI4	Lactococcus_phage	4.6e-50	62.5
WP_012898690.1\|2518339_2518660_+	hypothetical protein	NA	NA	NA	NA
WP_144242125.1\|2518783_2519050_+	hypothetical protein	NA	NA	NA	NA
WP_012898692.1\|2519420_2520140_+	hypothetical protein	NA	NA	NA	NA
WP_003131983.1\|2520582_2520783_+	hypothetical protein	NA	NA	NA	NA
WP_003131984.1\|2520841_2522182_-	type I glutamate--ammonia ligase	A0A2P1EM84	Moumouvirus	1.8e-10	23.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013656

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection