CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013642	Thermotoga naphthophila RKU-10, complete sequence	8 crisprs	cas14k,DEDDh,cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,cmr1gr7,cas3HD,cas3,WYL,cas6,csx1,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx22,csa3,cas14j	0	3	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013642_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_1

164700-166129

Orphan

III-A

Consensus_repeat	Method
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRT

21 spacers

The CRISPR arrays of NC_013642_1

>merge|NC_013642|1|164700-166129|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAACTTTGCTGTTGCGATCCACACCAGGATGGCATGCCTTCTGGTTTCAATAGTTCCTTAGAGGTATGGAAACAAATCTCGAAGTCATAAAACTCTTTCCGCCTGCAATAGTTTCAATAGTTCCTTAGAGGTATGGAAACAGGAATTCGTTCGCATCCTCGACAGCATCAAAGACCGGTTTCAATAGTTCCTTAGAGGTATGGAAACACTGTTTTGAGGATATTCTCACTGTGTCTTCCCTTATCGTTTCAATAGTTCCTTAGAGGTATGGAAACGAAGTTCACAGAGCACAATTATTCATGTATGAGGAGTTTCAATAGTTCCTTAGAGGTATGGAAACAGTACAGAGAAAGTTGTTCACATGTGTACAAAAAAGGTTTCAATAGTTCCTTAGAGGTATGGAAACTAAGAAACTGCAACCGCTGTGGGTTGTTGCCTATTGTTTCAATAGTTCCTTAGAGGTATGGAAACAGAGTTCTACTTTCCTACCATCCTTCAAATAAACACTGTTTCAATAGTTCCTTAGAGGTATGGAAACTAGTGAAAAGAAAGAAAACCAGAATCTAGAAGGAGGGTTTCAATAGTTCCTTAGAGGTATGGAAACCTATTTCTGTTCCTTTCAGATTTTCACAAATATAGTGTTTCAATAGTTCCTTAGAGGTATGGAAACTGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCCGTTTCAATAGTTCCTTAGAGGTATGGAAACTGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCCGTTTCAATAGTTCCTTAGAGGTATGGAAACTTAGGTAATTGGGTAGGTAAAACGGTCACTTTTAGTGGTTTCAATAGTTCCTTAGAGGTATGGAAACATACAACAGGAAAGGTGGTGAAACGATGGAGGAAAAGTTTCAATAGTTCCTTAGAGGTATGGAAACACAACCGTATCGAGCTTCTTGAGTCCCCTGCAATCGAGTTTCAATAGTTCCTTAGAGGTATGGAAACGAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAATGTTTCAATAGTTCCTTAGAGGTATGGAAACATGAACTATAAAGTTTTTCCTCGATTTTTGGTTCGCTTGTTTCAATAGTTCCTTAGAGGTATGGAAACAGGTTTCAGTAGAAGATGAAGACATAATAAGGCACAGTTTCAATAGTTCCTTAGAGGTATGGAAACCGTTATAATAGATTGTTACGCTTCTCCATTCCTTCAGTTTCAATAGTTCCTTAGAGGTATGGAAACTATGAGCCTTTTCGTATAATGCCTTTTCAATTGAGCGTGTTTCAATAGTTCCTTAGAGGTATGGAAACACGATTTTTCCGTCGAATGTTTCGAATTTCTTTGCGAGTTTCAATACTTCCTTAGAGGTACGGAAAC

>NC_013642|1|1|164700-166062|PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTTGCTGTTGCGATCCACACCAGGATGGCATGCCTTCTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AAATCTCGAAGTCATAAAACTCTTTCCGCCTGCAATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTGTTTTGAGGATATTCTCACTGTGTCTTCCCTTATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGTTCACAGAGCACAATTATTCATGTATGAGGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGTACAGAGAAAGTTGTTCACATGTGTACAAAAAAG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TAAGAAACTGCAACCGCTGTGGGTTGTTGCCTATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGAGTTCTACTTTCCTACCATCCTTCAAATAAACACT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TAGTGAAAAGAAAGAAAACCAGAATCTAGAAGGAGG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTATTTCTGTTCCTTTCAGATTTTCACAAATATAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTAGGTAATTGGGTAGGTAAAACGGTCACTTTTAGTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATACAACAGGAAAGGTGGTGAAACGATGGAGGAAAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACAACCGTATCGAGCTTCTTGAGTCCCCTGCAATCGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGAACTATAAAGTTTTTCCTCGATTTTTGGTTCGCTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGTTTCAGTAGAAGATGAAGACATAATAAGGCACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGTTATAATAGATTGTTACGCTTCTCCATTCCTTCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATGAGCCTTTTCGTATAATGCCTTTTCAATTGAGCGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC

>NC_013642|1|1|164700-166129|CRISPRCasFinder
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTTGCTGTTGCGATCCACACCAGGATGGCATGCCTTCTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AAATCTCGAAGTCATAAAACTCTTTCCGCCTGCAATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTGTTTTGAGGATATTCTCACTGTGTCTTCCCTTATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGTTCACAGAGCACAATTATTCATGTATGAGGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGTACAGAGAAAGTTGTTCACATGTGTACAAAAAAG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TAAGAAACTGCAACCGCTGTGGGTTGTTGCCTATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGAGTTCTACTTTCCTACCATCCTTCAAATAAACACT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TAGTGAAAAGAAAGAAAACCAGAATCTAGAAGGAGG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTATTTCTGTTCCTTTCAGATTTTCACAAATATAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTAGGTAATTGGGTAGGTAAAACGGTCACTTTTAGTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATACAACAGGAAAGGTGGTGAAACGATGGAGGAAAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACAACCGTATCGAGCTTCTTGAGTCCCCTGCAATCGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGAACTATAAAGTTTTTCCTCGATTTTTGGTTCGCTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGTTTCAGTAGAAGATGAAGACATAATAAGGCACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGTTATAATAGATTGTTACGCTTCTCCATTCCTTCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATGAGCCTTTTCGTATAATGCCTTTTCAATTGAGCGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGATTTTTCCGTCGAATGTTTCGAATTTCTTTGCGA
GTTTCAATACTTCCTTAGAGGTACGGAAAC

>NC_013642|1|1|164700-166129|CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTTGCTGTTGCGATCCACACCAGGATGGCATGCCTTCTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AAATCTCGAAGTCATAAAACTCTTTCCGCCTGCAATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTGTTTTGAGGATATTCTCACTGTGTCTTCCCTTATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGTTCACAGAGCACAATTATTCATGTATGAGGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGTACAGAGAAAGTTGTTCACATGTGTACAAAAAAG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TAAGAAACTGCAACCGCTGTGGGTTGTTGCCTATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGAGTTCTACTTTCCTACCATCCTTCAAATAAACACT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TAGTGAAAAGAAAGAAAACCAGAATCTAGAAGGAGG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTATTTCTGTTCCTTTCAGATTTTCACAAATATAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGGGAAAGGAGGTGTAAACATGGCAGATATCCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTAGGTAATTGGGTAGGTAAAACGGTCACTTTTAGTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATACAACAGGAAAGGTGGTGAAACGATGGAGGAAAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACAACCGTATCGAGCTTCTTGAGTCCCCTGCAATCGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGGTTTGATGTAGAAGGTGGTGTGTACTGGAGAAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGAACTATAAAGTTTTTCCTCGATTTTTGGTTCGCTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGTTTCAGTAGAAGATGAAGACATAATAAGGCACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGTTATAATAGATTGTTACGCTTCTCCATTCCTTCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATGAGCCTTTTCGTATAATGCCTTTTCAATTGAGCGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGATTTTTCCGTCGAATGTTTCGAATTTCTTTGCGA
GTTTCAATACTTCCTTAGAGGTACGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_012310618.1\|155378_155822_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224237
NC_013642.1\|WP_041434753.1\|166255_167128_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_013642.1\|WP_012895850.1\|168202_169213_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NC_013642.1\|WP_011943159.1\|174022_175372_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NC_013642.1\|WP_011943158.1\|175417_175753_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_013642.1\|WP_011943160.1\|173383_174046_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NC_013642.1\|WP_011943165.1\|167124_168210_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_013642.1\|WP_011943170.1\|155818_156547_-\|KaiC-domain-containing-protein	unknown	unknown	gnl\|CDD\|235281
NC_013642.1\|WP_012895847.1\|157166_160169_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_013642.1\|WP_004083188.1\|162208_162652_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_013642.1\|WP_004083187.1\|160402_162193_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_013642.1\|WP_012895851.1\|172177_172729_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274317
NC_013642.1\|WP_004083185.1\|156718_157177_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|130592
NC_013642.1\|WP_012895846.1\|152137_154120_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_013642.1\|WP_011943164.1\|169209_170175_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380315
NC_013642.1\|WP_012895848.1\|163347_164073_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_013642.1\|WP_011943163.1\|170256_172212_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|181342
NC_013642.1\|WP_011943161.1\|172854_173355_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380325
NC_013642.1\|WP_008193527.1\|162681_163269_-\|phosphate-propanoyltransferase	unknown	unknown	gnl\|CDD\|237899
NC_013642.1\|WP_011943172.1\|154259_155369_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_012310618.1\|155378_155822_-\|transcriptional-regulator	gnl\|CDD\|224237	COG1318, COG1318, Predicted transcriptional regulators [Transcription].	3.53308e-38
NC_013642.1\|WP_041434753.1\|166255_167128_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.04902e-99
NC_013642.1\|WP_012895850.1\|168202_169213_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	2.13994e-16
NC_013642.1\|WP_011943159.1\|174022_175372_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NC_013642.1\|WP_011943158.1\|175417_175753_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	3.1365e-19
NC_013642.1\|WP_011943160.1\|173383_174046_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	1.43462e-94
NC_013642.1\|WP_011943165.1\|167124_168210_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.87991e-15
NC_013642.1\|WP_011943170.1\|155818_156547_-\|KaiC-domain-containing-protein	gnl\|CDD\|235281	PRK04328, PRK04328, hypothetical protein; Provisional.	1.51705e-172
NC_013642.1\|WP_012895847.1\|157166_160169_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_013642.1\|WP_004083188.1\|162208_162652_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	7.33553e-35
NC_013642.1\|WP_004083187.1\|160402_162193_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_013642.1\|WP_012895851.1\|172177_172729_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.91928e-65
NC_013642.1\|WP_004083185.1\|156718_157177_+\|arginine-repressor	gnl\|CDD\|130592	TIGR01529, Arginine_repressor., arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs. [Amino acid biosynthesis, Glutamate family, Regulatory functions, DNA interactions].	1.02883e-68
NC_013642.1\|WP_012895846.1\|152137_154120_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.02142e-67
NC_013642.1\|WP_011943164.1\|169209_170175_-\|redoxin-domain-containing-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.30372e-80
NC_013642.1\|WP_012895848.1\|163347_164073_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	6.69142e-25
NC_013642.1\|WP_011943163.1\|170256_172212_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_013642.1\|WP_011943161.1\|172854_173355_-\|nitroreductase-family-protein	gnl\|CDD\|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	2.69366e-95
NC_013642.1\|WP_008193527.1\|162681_163269_-\|phosphate-propanoyltransferase	gnl\|CDD\|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	5.00867e-130
NC_013642.1\|WP_011943172.1\|154259_155369_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.88254e-38

>NC_013642.1|WP_012895848.1|163347_164073_-|sulfite-exporter-TauE/SafE-family-protein
MIVLVFLGGILAGFLNVLAGGGSMITLPILTALGLGIDVANGTNRIAIILQNLVAIERFKAKKVLKIKEAILVALPAIVGAILGSSIAVQIEKEMLQKIVGVIFLVMAVSLVWKPRIWLEDRFVKRNWVLIYIVFFLIGVYGGFIQAGVGFLLMPAIALLLGYELVKTNAVKVFIVASYNIISLVIFILNGKVNFLYGFILALGNMTGAWLAATFSIKKGANWVRWIVFTAVIVVGIRYVF
>NC_013642.1|WP_008193527.1|162681_163269_-|phosphate-propanoyltransferase
MTKKEPGIIVGVSNRHVHLSKEDLEILFGKGYELTPIKDLRQPGQYAAKETVTIVGPKGAIENVRVLGPVRRETQVEISRTDAFKLGLRPPVRDSGDLEGTPGIVIIGPNGILVKEKGVIIAKRHIHMHPKDAEHYGVKDKDLVKVIVESGDRKLIFDDVLIRVREDFALEFHVDTDEANAAMLNTGDFVYIVEF
>NC_013642.1|WP_004083188.1|162208_162652_+|Hsp20/alpha-crystallin-family-protein
MLLGRREDIFRPFRELQREIDRLFDDFFRTEVRPAKEFFAPDMDVYETDDEVVIEVEIPGIDRKDVKITVEENILKISGEKKLEREQKGKNYYYVERSAGKFERAIRLPDYVDVEKIKAEYKNGVLTIRVPKKEERKKKVIEVEVQE
>NC_013642.1|WP_004083187.1|160402_162193_+|molecular-chaperone-DnaK
MAEKKEFVVGIDLGTTNSVIAWMKPDGTVEVIPNAEGSRVTPSVVAFTKSGEILVGEPAKRQMILNPERTIKSIKRKMGTDYKVRIDDKEYTPQEISAFILKKLKNDAEAYLGGEIKKAVITCPAYFNDAQRQATKEAGIIAGLEVLRIINEPTAAALAYGLDKAGKEEKVLVYDLGGGTFDVSILEIGEGVIEVIATAGNNHLGGDDFDQRLIDWMAEEFKKQHGIDLREDRQALQRLRDAAEKAKIELSTKMETDVSLPFIAVSPSGQPLHLEMRITRSLFESLTRDLVEMTRGPIEQALNDAKLSPQDIDEIILVGGMTRVPMVQRFIKEFFGKEPNKSVNPDEAVAIGAAIQAAILAGTEGAKGRDIVLVDVTPLTLGIEVKGGLFEPIIPRNTKIPVRKSKIFTTVEDGQTEVEIRVYQGERPIARENIFLGSFKLVGIPPAPRGVPQIEVTFDIDSDGIVHVSAKDLGSGKEQSMVVTGRHKLSEDEIKRMIEDAKRYEEQDKRLKEEIELKNRADDLAYSVEKTLKEHGDKIPADLKSRLEDMIRELRDAINRNDIPKVKMLFDDLQKESMKIGEYLYKSATGGETSNQ
>NC_013642.1|WP_012895847.1|157166_160169_-|efflux-RND-transporter-permease-subunit
MKIAEISSRRPIAIFMLLTAVVFLGFISFQHLKLDLLPQIEYPYAVVITTYMGAGTEEVEELVTKPLEGYISSTPGVRRFTSMSMDSVSFILVEFDWNVKTSEAVGRLSRYVDLATRDLPEGANPVVVEFDPSLLPVYAFSTEDDYEDVVSKIKRLPEVASVEVMGKPEKIVEVILDQEKIKRFDVDPSLIETILSGNLVYPFGYVSDSEGNIYPVSVDGRFENIEDLKNTIVGFRGVKYQSLLQGKVPNILVPVRLRNIAEVNITNESVQGEVRVNGKKASLIAIYKRSGANTVKTVREIKRILRDSKINYIEAMNQAYYTERAIDNLLKNLLYGFIAAFVVVLIFLKDFTSTIVTSFSIPLSLTITFVLLYAFGLNLDTLTLGGLIMALGMLVDNSIVVFENIYRHRSLGDPIPDAARKGAGEVWLAILASTLTTVSVFLPMVFFTGFVVRLFKYFAIAFVFALSSSLFVSTVVVPAGTRWIKPRRGKLTEALQKHYRKALEWCLKRKKLVLVISFALVAISVIYLLSKPLGFLPSFQTNLMVIDVKLPSQSSYEKTTEAVEQIEDYLNKHRNEYKISSFYSEVGITNIYSQIMGRGQNEARIMVNLGGSRREFAKNREKLKNAISQLNIPEAKIEVLEQSQQIYEILGYPVTIEVRGDDLSLIQEKAKEIFERLRELQEVKKIQIRNSFEKEVLHVKIDRNKALMNGVVTGQVFLDLQTYLLGKKIGTLRTEEGTLPIVLKKAKSLSPEDLSKISLTGLKGDVSLGAVSNISRETLPSIVEHSDGERVVYVDLVSIEGSIGEVAKKVENLLNEIDLSGVKVEITGQKSFMDEAFSELQYVVYIAIALVYMILAAQFESFTLPFIIFFTIPFAVVGVAFAVFVNGYSLNVPVLVGLLTLSGTVVNNAIVMLTRIEQIRQEKGLLEATLEGAQSRLRPILMTTFTTIVALLPTALSHAEGSEIESPISWVVIFGMLISMLFTLFVIPVIYTAIRRKVRV
>NC_013642.1|WP_004083185.1|156718_157177_+|arginine-repressor
MKISKKRRQELIRKIIHEKKISNQFQIVEELKKYGIKAVQPTVARDLKEIGAVKIMDESGNYVYKLLDETPVIDPWKELKRNFKSFVESIDRAGNLIVIKTIPGTASGIARVIDRLDIDEIVGTLAGDDTIFVAVRDPESCEKIVEKLSSIL
>NC_013642.1|WP_011943170.1|155818_156547_-|KaiC-domain-containing-protein
MIKKVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALEEHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAEKEKYVVKDIDDVRELAEVLKRAVKETQAKRVVIDSVTTLYITKPAMARSIIFQLKRILSGLGCTSLFVSQVSVTEKGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVIHPSEGGEEK
>NC_013642.1|WP_012310618.1|155378_155822_-|transcriptional-regulator
MKLNFNPVTKEEIHQLEIALLVGTLFRKEVLEEIRNSAERLTWVDSLAVAAGALARAKAGMTASEIAEELGRTEATIREHVKGETKAGKLVNETYELLKEGKLSVEGLIGEGIKVVTTTTGSDEKLQEVKKELEEIKQKLESVIQKL
>NC_013642.1|WP_011943172.1|154259_155369_+|MFS-transporter
MFFLTNVFRSMGTMSFNLLIQLRMKEIGATLFMIGLLSSLQGAMNTFSNVFWGRISDKIGKRKVFIILSLVLASAFYPLYAVINVPSAFLFVSMIIAFFNGMYPPAAMALSSTAKRMSLGFSLYNSSNSLGMLLSRISIGFLLMFMDLKLAFVFFSIVVAVSVIPALGLKEEKIQKKKEEDFHFGRKVMEHGIWALYLGSLLRQMGTSGSMSLIAVYLNERFHYSASTIGFVTAVNPLIQIPSHFFFGKLVEKTDPKFISVLGIFMSSLVPFLMMIPENWAPVLAYAFLGASFGAFINGSNNFLGRRFHYLQRGRALGLLSSARFLGATIGPFLAGLLAEKSYSLMFSTLGLAVLSGGIVVLLFTKDGD
>NC_013642.1|WP_012895846.1|152137_154120_+|methyl-accepting-chemotaxis-protein
MKNLPVFWKIMIIVLILGAGITFVGTLSTITIRSKLLEQTDINLLTQSEGSADALWNFLQAHTQLVDLLSRDEGVINLYRDETNEEDVKSLFEKVLKSYPNVMNVYVGLKDGRMYLVPEQELPEGYDPRVRPWYKDAVAKLGKIVITDPYADASTGKTIITIAKAVQIGQEIVGVLGLDFDCSKLVDELFKKGVEKGYMSALVDENGTITLHSKKDYIGENIKDTDFFKKWHAGSESGVFGYVFDGIPRRTGYKKLPNGWIYAIVVPEEIVYSEVKESTVVLITITLVSLVAAIVFALFMSRRYISEPLKHLASISDKIAGGDLTVEIQLNSKDEIGKLGNALTHMVKSLREIALNIKNNSSEIKRNAESVASVAQEVSSTIEEVTSQVENVESNVSNTSASIQELTSGVEEVAASAQNVSRAAQDLSEKSTQVSESAKEGEKAIKEIVEMIKQARSRAEQTASVVEELNEHARNIGQILDTINSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESKSATEKIGQILNQISQEVVKANEETRGTVQAVENISSRAEVVASQFDRIAQGISSIVSQIQNLAAIAEEQSAAAEEMSSAMDNASRSMVEVAEQMNEIAEAMKQQAKAVNTLSEAMNKLDQIAEKLEKGMEVFKL
>NC_013642.1|WP_041434753.1|166255_167128_+|ABC-transporter-ATP-binding-protein
MEILKVVDLKKHYGDVKAVDGISFTVERGTVFSFLGPNGAGKTTTVEILESLRKKDSGEIYYFGERKDVLDRETKRKIGVCLQKSAFFENLTVWETLKLFRGLYGTGLDLKEVMGLFSLENIEKKMVKTLSGGQLQRLAVAVAFINDPEIVFLDEPTTGLDPQARRQIWDTIEHFKNLGKTIFLTTHYMEEAERLSDHVCIIDHGKIIAEGTPSSLISSSGLKTVVEFDCDQDVNVRYLEKKENHYVVETDAPEELIKDLLKNWNVSNIVIRKPNLEDVFLKLTGRDLRE
>NC_013642.1|WP_011943165.1|167124_168210_+|ABC-transporter-permease
MRHLVVSILKNDYFRTKSVLFWNFLFPILLYLILVSIFGDMSSNMNLRIGLVGESSLVESVFSHLPSGIEIIRTQNPERDLKYGKIDVCVILPENFDNLFTKAIIFSKTKISVPVEITILYAPERQESIVLANVVSNILESLDLQLRKVKEVEVEYRKKERQAINYSHYILPAVLLVGVMSVGLFTVPYQLALYREQGILKRILASPLRGHHYFFSIVVCGLFAMSITSASVTLFARFVYGVEFPINVSFLGGVLLSFLTFLSVSLLMVSLFKTFSALRAASQVFNQVFMFLGGFYFDVSGIPWPIKAVVLGNPATYLVDYLRGSFGYRTIYSNHFLVPIVWIVLSLVLFFLNWRRVMMVE
>NC_013642.1|WP_012895850.1|168202_169213_+|ABC-transporter-permease
MSEFLALFSAMWKESWRDKISTFFSIAFPVMFLLIFGFLFGGSGNSVKTAVVTVDYDLSDFGDVYTSLEELKGYYHEVAVVEKERIIFIRNTTDEYYQSLLDSWEISLKNKVTRLLNGLNPVIMVKKEVLKAARELTPFDYTLTGVIAVSLLSIGLFGTVDVFSRYRERGFLKRLKATPVGNFSFVFGLISARMFYGILSTALIMLLGTLIFKASYELNVFLFLISVVSSVLSFIVLGALISILFKKSDVATNVAVILFTIMMFLTGVYFPVSFLPDYLRVVSYFLPVKYGVELIRYSLGFEIFPFSRYIITAVIMFLAGLMFVFYTASLVLRKED
>NC_013642.1|WP_011943164.1|169209_170175_-|redoxin-domain-containing-protein
MRVRHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSKENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALPGGNYWMKNAPALIAVHSKKDFDCALPDNRDYFLFDTGLAVGNILVQATQMGLVAHPVAGYDPVKVKEILKIPEDHVLITLIAVGYLGDESELSEKHRELERSERVRKELSEIVRWNL
>NC_013642.1|WP_011943163.1|170256_172212_-|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEVADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSKERERQMFTFPVLTASLLYRDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITMNLPRIALESGGDREKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQYGTIGVTGVWESASIMGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPACGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRR
>NC_013642.1|WP_012895851.1|172177_172729_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCYMCHNPETWHLSEEYKRPAEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREETLSLSKMFKEKYGERLTVVLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHAYRQDGFPASKNQIHIDRRTFERMIEAMLRREHHEGSVFVRKRI
>NC_013642.1|WP_011943161.1|172854_173355_-|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPDELVKEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMSAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVHPREERVKAFRELLGIPEHVVPFAIVPVGYPAEQPAQVDRFKPERIHYEKW
>NC_013642.1|WP_011943160.1|173383_174046_+|endonuclease-III-domain-containing-protein
MRLTELYRKLLEIHGSVGKWWPGTPEEIAITAILTQNTNWKNVERVMENIKNAVKGNNLLKELDSLPEEKVAELIRPAGFFNIKTKRLKALLKFLKEYNYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTHYPEDVRLYQEFHGLIVEHAKKFCSKTPKCGVCPLKKECCHVSQMNGFS
>NC_013642.1|WP_011943159.1|174022_175372_-|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLVQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVSGVEYDVDTIMKHVQKSVMMSRKGIEYLLNKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIIGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLSKVDDGFEVALENGETLKAEKVLLAAGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRSGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNPEEVVISKFPVSANGRARTMLENIGFAKVIADKKDRTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NC_013642.1|WP_011943158.1|175417_175753_-|carboxymuconolactone-decarboxylase-family-protein
MAAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHAAESTKALDTKTKELISLGIAVAVRCEPCIVWHTGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK

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Crispr_ID: NC_013642_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_2

178291-178589

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR

4 spacers

The CRISPR arrays of NC_013642_2

>merge|NC_013642|2|178291-178589|CRISPRCasFinder,CRT,PILER-CR
GGTTCCATACCTCTAAGGAAGTATTGAAACCTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCCGTTTCCATACCTCTAAGGAACTATTGAAACCGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGGGTTTCCATACCTCTAAGGAACTATTGAAACATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCGGTTTCCATACCTCTAAGGAACTATTGAAACAGACTTGGATTCACGTATTGTTTAATCTGCTGAAGCGTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_013642|2|2|178291-178589|CRISPRCasFinder
GGTTCCATACCTCTAAGGAAGTATTGAAAC	CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGACTTGGATTCACGTATTGTTTAATCTGCTGAAGC
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_013642|2|2|178291-178589|CRT
GGTTCCATACCTCTAAGGAAGTATTGAAAC	CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGACTTGGATTCACGTATTGTTTAATCTGCTGAAGC
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_013642|2|2|178293-178589|PILER-CR
TTCCATACCTCTAAGGAAGTATTGAAACCT	CTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCCGT
TTCCATACCTCTAAGGAACTATTGAAACCG	GTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGGGT
TTCCATACCTCTAAGGAACTATTGAAACAT	TAATGGCCGTGTAAAAATGATTGCAGAGGCAACCGGT
TTCCATACCTCTAAGGAACTATTGAAACAG	ACTTGGATTCACGTATTGTTTAATCTGCTGAAGCGT
TTCCATACCTCTAAGGAACTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_012895854.1\|185579_186713_-\|glutamine-amidotransferase-family-protein	unknown	unknown	gnl\|CDD\|238888
NC_013642.1\|WP_011943153.1\|182337_183615_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NC_013642.1\|WP_012895851.1\|172177_172729_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274317
NC_013642.1\|WP_008191950.1\|181612_182350_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238481
NC_013642.1\|WP_012895850.1\|168202_169213_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NC_013642.1\|WP_011943158.1\|175417_175753_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_013642.1\|WP_011943150.1\|187771_188989_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013642.1\|WP_011943149.1\|188972_189527_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|224352
NC_013642.1\|WP_011943160.1\|173383_174046_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NC_013642.1\|WP_012895853.1\|180470_181586_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NC_013642.1\|WP_011943159.1\|174022_175372_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
NC_013642.1\|WP_004083229.1\|184063_185587_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|223147
NC_013642.1\|WP_012895852.1\|177215_178181_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223318
NC_013642.1\|WP_012895855.1\|187113_187791_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013642.1\|WP_011943164.1\|169209_170175_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380315
NC_013642.1\|WP_011943157.1\|175777_177109_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
NC_013642.1\|WP_011943163.1\|170256_172212_-\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|181342
NC_013642.1\|WP_011943161.1\|172854_173355_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380325
NC_013642.1\|WP_008191941.1\|179245_180466_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340823
NC_013642.1\|WP_004083227.1\|183611_184067_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319885

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_012895854.1\|185579_186713_-\|glutamine-amidotransferase-family-protein	gnl\|CDD\|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	1.42689e-110
NC_013642.1\|WP_011943153.1\|182337_183615_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	4.0902e-84
NC_013642.1\|WP_012895851.1\|172177_172729_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.91928e-65
NC_013642.1\|WP_008191950.1\|181612_182350_-\|hypothetical-protein	gnl\|CDD\|238481	cd00981, arch_gltB, Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.	4.04526e-126
NC_013642.1\|WP_012895850.1\|168202_169213_+\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	2.13994e-16
NC_013642.1\|WP_011943158.1\|175417_175753_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	3.1365e-19
NC_013642.1\|WP_011943150.1\|187771_188989_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.33291e-52
NC_013642.1\|WP_011943149.1\|188972_189527_-\|thymidine-kinase	gnl\|CDD\|224352	COG1435, Tdk, Thymidine kinase [Nucleotide transport and metabolism].	2.9686e-79
NC_013642.1\|WP_011943160.1\|173383_174046_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	1.43462e-94
NC_013642.1\|WP_012895853.1\|180470_181586_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.85021e-41
NC_013642.1\|WP_011943159.1\|174022_175372_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NC_013642.1\|WP_004083229.1\|184063_185587_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	0
NC_013642.1\|WP_012895852.1\|177215_178181_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	1.95251e-153
NC_013642.1\|WP_012895855.1\|187113_187791_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.37318e-86
NC_013642.1\|WP_011943164.1\|169209_170175_-\|redoxin-domain-containing-protein	gnl\|CDD\|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.30372e-80
NC_013642.1\|WP_011943157.1\|175777_177109_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	7.41689e-78
NC_013642.1\|WP_011943163.1\|170256_172212_-\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_013642.1\|WP_011943161.1\|172854_173355_-\|nitroreductase-family-protein	gnl\|CDD\|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	2.69366e-95
NC_013642.1\|WP_008191941.1\|179245_180466_+\|glycosyltransferase	gnl\|CDD\|340823	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins. Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT4 family of glycosyltransferases.	0
NC_013642.1\|WP_004083227.1\|183611_184067_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319885	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase. This family includes CooF, the iron-sulfur subunit of carbon monoxide dehydrogenase (CODH), found in anaerobic bacteria and archaea. Carbon monoxide dehydrogenase is a key enzyme for carbon monoxide (CO) metabolism, where CooF is the proposed mediator of electron transfer between CODH and the CO-induced hydrogenase, catalyzing the reaction that uses CO as a single carbon and energy source, and producing only H2 and CO2. The ion-sulfur subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons in the protein complex during reaction.	1.75166e-65

>NC_013642.1|WP_012895852.1|177215_178181_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MRFFVLGAGSWGTVFAQMLHENGEEVVLWARRKEIVDLINVSHTSPYVEESKITVRATNDLDELKKEDILVIAIPVQYIREYLLRLPVKPFMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGENSKELQRRISSEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGLGGWDNAKAALETRGIYEVARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIARGFDPLKLLESSQQVVEGAFTVKAVMKISEEKKIDMPISEEVYRVIYERKSPLQSMRDLMRRSLKAEFWAS
>NC_013642.1|WP_011943157.1|175777_177109_-|FAD-dependent-oxidoreductase
MKYDVVVVGGGPAGLVAAFTTKRFFGDKKILVIKKTEKEMVPCGIPYIFHTLGSVENDYMGIEDRFKSAGIDLLIDEVVDGNPDEKKLLAKSGKEISYDKLIIATGSSPNTPKIPGVDLKDVFTVPKEADYLKLLHEKVKGAKDVVIIGGGFIGVEVADEIKKSGKNVTLVEIMDSLLPVSFDPDFGELARKELESDNVKVLTGRKVTEILGTEKVEGVKLDSGETIPADVVVLATGYRPNSELAKKLGLKVTELGFIETDEYMRTSKPDIFAAGDCVQHKDFLTGKPSRLMLASAAVFDARIAASNLYGLKVIRTNKGSLNAYSTVIGSKAFGSVGITERIAKEEGFEVVVGKAEAPDRHPGKFEDTSKLLVKLIFSEDSKILLGAQVCGGKSVGEIVNLISLGIQKGITANDLFTMQIGTHPLLTSAPTVYPLAKAAEMVL
>NC_013642.1|WP_011943158.1|175417_175753_-|carboxymuconolactone-decarboxylase-family-protein
MAAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHAAESTKALDTKTKELISLGIAVAVRCEPCIVWHTGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK
>NC_013642.1|WP_011943159.1|174022_175372_-|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLVQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVSGVEYDVDTIMKHVQKSVMMSRKGIEYLLNKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIIGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLSKVDDGFEVALENGETLKAEKVLLAAGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRSGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNPEEVVISKFPVSANGRARTMLENIGFAKVIADKKDRTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NC_013642.1|WP_011943160.1|173383_174046_+|endonuclease-III-domain-containing-protein
MRLTELYRKLLEIHGSVGKWWPGTPEEIAITAILTQNTNWKNVERVMENIKNAVKGNNLLKELDSLPEEKVAELIRPAGFFNIKTKRLKALLKFLKEYNYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQRLFMTHYPEDVRLYQEFHGLIVEHAKKFCSKTPKCGVCPLKKECCHVSQMNGFS
>NC_013642.1|WP_011943161.1|172854_173355_-|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPDELVKEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMSAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVHPREERVKAFRELLGIPEHVVPFAIVPVGYPAEQPAQVDRFKPERIHYEKW
>NC_013642.1|WP_012895851.1|172177_172729_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCYMCHNPETWHLSEEYKRPAEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREETLSLSKMFKEKYGERLTVVLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHAYRQDGFPASKNQIHIDRRTFERMIEAMLRREHHEGSVFVRKRI
>NC_013642.1|WP_011943163.1|170256_172212_-|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEVADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSKERERQMFTFPVLTASLLYRDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITMNLPRIALESGGDREKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQYGTIGVTGVWESASIMGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPACGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRR
>NC_013642.1|WP_011943164.1|169209_170175_-|redoxin-domain-containing-protein
MRVRHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSKENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALPGGNYWMKNAPALIAVHSKKDFDCALPDNRDYFLFDTGLAVGNILVQATQMGLVAHPVAGYDPVKVKEILKIPEDHVLITLIAVGYLGDESELSEKHRELERSERVRKELSEIVRWNL
>NC_013642.1|WP_012895850.1|168202_169213_+|ABC-transporter-permease
MSEFLALFSAMWKESWRDKISTFFSIAFPVMFLLIFGFLFGGSGNSVKTAVVTVDYDLSDFGDVYTSLEELKGYYHEVAVVEKERIIFIRNTTDEYYQSLLDSWEISLKNKVTRLLNGLNPVIMVKKEVLKAARELTPFDYTLTGVIAVSLLSIGLFGTVDVFSRYRERGFLKRLKATPVGNFSFVFGLISARMFYGILSTALIMLLGTLIFKASYELNVFLFLISVVSSVLSFIVLGALISILFKKSDVATNVAVILFTIMMFLTGVYFPVSFLPDYLRVVSYFLPVKYGVELIRYSLGFEIFPFSRYIITAVIMFLAGLMFVFYTASLVLRKED
>NC_013642.1|WP_008191941.1|179245_180466_+|glycosyltransferase
MDVVLRERNIEEYRTIIGNEVDEIKKLAEPLKGKKVLHVNATAYGGGVAEILHNLVPLMRSVGLDARWRVIEAPDEFFNVTKKFHNTLQGADIEISEEEWNLYEEVCGKNAELIQDEELFVIHDPQPAALRKFVNLNDRKWIWRCHIDLSTPNMKVWQRFSQYLEGYDRLVFHLEEYFPQGWEERSIAFPPSIDPLSEKNRDLDEDTIRKTLERLEIDPERPLITVVARFDPWKDLFSAIDVYRLVKKEIPEVQLAVVSAMATDDPEGWFFFEKVLRYAGTDEDIKFCTNLKGVGNKEVNAIQRATTVALHTATREGFGLVISEALYKRVPVVARPVGGVKIQVKHGENGYLAWEREDLAGYVVKLIKDEELRRKMGEKGRQTVVENFIITVHLKNYLKLFLDLLR
>NC_013642.1|WP_012895853.1|180470_181586_+|ROK-family-transcriptional-regulator
MPSPLLRRENKIKILRYILRNGKTTRNQLASNLNLAHSTLSYIIDELLDEGFLVFEEIKKERGRPYQILSVNPEKFTAIGVKVGREEVRGVLFDASMNPLKEHRVQILSGMRNNDGYTRALRETIEQLHSENLLGVGICSSGIVKEGKVIVSHVMNVKDWDPRKVLKDLERILVMNDSDALCREISQRVNADFLLVSYGIGIGASLWKDKRIHHLEMGHMLASSEGKCYCGQTGCLEYHSSEYAVLKSCLGKEIDFEDFITSEEEKYRQTIEELREKARKDFDSVKVHYEKAFKTFSVVLGNVIMGSGVSRVFFAGEGVVNEEMIKILEEMVRARFNRDFVGEVQFQVANANWMLGAARAVVDKYLPYIVK
>NC_013642.1|WP_008191950.1|181612_182350_-|hypothetical-protein
MVRIDAKGLHYKKLNDLIWEAIENGEEEIVLDNVCGQRYIGAGIRKKVKIEINGVPGNDLGVFMDGPEIIVNGNAQDGVGNTMNAGKIVVHGHAGDIIGYAMRGGHIYIKRNAGYRVGIHMKAYKENYPVVVIGGFARDFLGEYMAGGLLIVLGLEKDEDGNIAGNYVGTGMHGGEIFLRGTVEEHKLGKEVKIFQPTEEDINRIKPYVEEFCRLFDYDSEEILNGEFIILKPYTHRPYGRLYAY
>NC_013642.1|WP_011943153.1|182337_183615_-|NAD(P)/FAD-dependent-oxidoreductase
MRYVIVGSGPAGLNAIEAIREVDKEGEILLITAEKYVGYSRPLITYLLGRKVTEEKMYYRTEDYLREMRVDIKPATRVEKVIPEEKTVVTDSGEEIRYDKLLIATGGKPFVPNIEGLTGKKGVFTFTTWEDEEKVEKYIEENDVKEAVVLGGGLIGLKTTEALMELGVKVTIVELADRILSVTFDRKASEIITEALKKEGCSVITNDTVVKVNGDDTVSSVVLKSGKEIPTKLLVIAIGVKPNVEFLKDSGIEINRGIVVNEKMETNVEGVYAAGDCTEFYDLIDGQRKTIAIWPVAVAQGRVAGYNMAGRNVRYPGGIPMNSVELAGIPTISVGHSNVEDDGYEILTFEEGNTYKKMVLKDNRLIGAILVNDIDRAGIYTGLILQKLDVSSFKDRLLDENFGLVYLPKEFRKKMLEGEIKIWLE
>NC_013642.1|WP_004083227.1|183611_184067_-|4Fe-4S-dicluster-domain-containing-protein
MIAVRRILIREEYCMGCKLCEINCVAAQVGTGNLIKVYRYVPELPEPNVIVEEHDYVTFALQCRNCDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEKKVASKCDLCADRGTPGCVEGCPNEALVLVEVRE
>NC_013642.1|WP_004083229.1|184063_185587_-|4Fe-4S-dicluster-domain-containing-protein
MAKRKVPPEFVVERDDYKCIRCLACVRVCSYGANFYDENANRVYTENTKCVGCHFCEAICPTEAITVRKNDFDIRPLAHWTPEHLIGIMKQAETGGVLLTSMGNDRPYFSYFDRIVLNASQVTNPSIDPLREPMEIRTYIGRKEEKLEIEEDEDGTVKLKTEIAPQLKLEVPVMFTAMSYGSISLNAILSLARAARTVGTFFNTGEGGLPKELREFKDNMIVQVASGRFGVSADYLNAGSAVEIKIGQGAKPGIGGHLPGEKVTEPISETRMIPVGTDALSPAPHHDIYSIEDLRQLIYAIKEATRYEKPVGVKIAAVHNVAPIAAGAVRAGADYIVIDGIRGGTGAAPKITRDHVGIPIEFAVAVVDQRLREEGIRHMASIVVAGGIRNSADVIKAIALGADAVYIGTAALISLGCHLCQTCYLGKCNWGIATQDPKLTKRLNPEIGARRAANLLRAWAHEIKEILGGMGINAIESLRGNREVLRGVGLHEYELKLLGIKPAGEAW
>NC_013642.1|WP_012895854.1|185579_186713_-|glutamine-amidotransferase-family-protein
MSYDLPRLIPDKDFKVPSACGVSGIMNTSGKRFSGNMIVESMALMRERGNGLGAGYAAYGIYPELKDLYCFHMLYDSDLDKKNAEEYIKDHYEIIESEPIPTRKNPHIKEVHILWRYFLKPKFIPEDMSEEDFVVSTVMFINEKINGAFVMSSGKNMGVFKGVGFPEDIADFYRIDEYKGYIWTAHNRFPTNTVGWWGGAHPFGILDWTVVHNGEISSYGINRRFLEAYGYKCTLMTDTEVVAYLVDLFMRRFGYSPQLTAKILAAPLWKDIDLMPEEERKLYTALRMNYGGALLNGPFAIIVANNNMMMGLNDRIKLRPLVAATKDDFLYIASEESAIRVVCPEPDEVWAPKAGDPVVGVLKSARKTQVVLEGENG
>NC_013642.1|WP_012895855.1|187113_187791_+|response-regulator-transcription-factor
MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKRKIIHTVRGIGYVARDE
>NC_013642.1|WP_011943150.1|187771_188989_+|HAMP-domain-containing-histidine-kinase
MLPVTNERKAFRKTQLIWTAVFTLSILLIVAITVGAVFIVEKRRITSQFDGELRRTADLIERRLKAPGMMGMLRTFRGLDPLFVPRGEAFQFLFPSGEVFLEVGEQIGTPETPVEEGFSTEGNYRIFTKKIDLGDTTIFLRVGKDISDLIERSRRLLSMYLLVILFSAGGAAVFGYFVSSLALLPVRNAYNSLKRFSMDASHELKTPLSVLKTSLDVLKYREDLPDDVKSKLNVMEKNVDKMSKQINQLLLLVKSESSFNGVVKERINLKEFLQQIVNEFKPKAESKGLVLEIDCPEDLFLETEKDTLRVILENLIDNAVKFTEKGKVIVGARKEGRLTIYVQDTGPGIPKKEQKRIFERFYRISRNTEGSGLGLSIVKELASRLKAKVILESEEGKGSTFKLVF
>NC_013642.1|WP_011943149.1|188972_189527_-|thymidine-kinase
MSGKLTIITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEIRKYIEEDTRGVFIDEVQFFSPGLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLKKRV

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Crispr_ID: NC_013642_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_3

654148-654833

Orphan

III-A

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATANTTCCTTAGAGGTATGGAAAC	CRT

10 spacers

The CRISPR arrays of NC_013642_3

>merge|NC_013642|3|654148-654833|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACATGTTTTTGCGACATCGGGCGGCGGGCGGCGTTTCAATAATTCCTTAGAGGTATGGAAACAGTTTTATACACACATTCGGAAAATTTCTTGTTGCGCGTTTCAATAATTCCTTAGAGGTATGGAAACCCGGCGTCCTGAACAATTTTTGCCGACGCTTCAGAGTTTCAATAATTCCTTAGAGGTATGGAAACGGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCTGTTTCAATAATTCCTTAGAGGTATGGAAACCAAGGGGAGGATGATACTGAATGGATAGGGGAACTCAGTTTCAATAGTTCCTTAGAGGTATGGAAACACCATTCATCCATTACAACCTCTTTGCCTCTAATTTGTTTCAATAGTTCCTTAGAGGTATGGAAACAGCACTTTTACGTCCGGATTTGTGAACACGACTTCCTGTTTCAATAATTCCTTAGAGGTATGGAAACTAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCAGTTTCAATAATTCCTTAGAGGTATGGAAACAGTTGGACGACGATCTTGTATTCATAAATGTTGTTGTTTCAATACTTCCTTAGAGGTATGGAAACTAAGACATTCTTTCGCTAAGAAAATCTAATAGTTTGTTTCAATACTTCCTTAGATGTACGAAAAA

>NC_013642|3|3|654148-654768|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATGTTTTTGCGACATCGGGCGGCGGGCGGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTTTTATACACACATTCGGAAAATTTCTTGTTGCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGGCGTCCTGAACAATTTTTGCCGACGCTTCAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAAGGGGAGGATGATACTGAATGGATAGGGGAACTCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACCATTCATCCATTACAACCTCTTTGCCTCTAATTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGCACTTTTACGTCCGGATTTGTGAACACGACTTCCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTTGGACGACGATCTTGTATTCATAAATGTTGTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC

>NC_013642|3|3|654148-654833|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATGTTTTTGCGACATCGGGCGGCGGGCGGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTTTTATACACACATTCGGAAAATTTCTTGTTGCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGGCGTCCTGAACAATTTTTGCCGACGCTTCAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAAGGGGAGGATGATACTGAATGGATAGGGGAACTCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACCATTCATCCATTACAACCTCTTTGCCTCTAATTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGCACTTTTACGTCCGGATTTGTGAACACGACTTCCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTTGGACGACGATCTTGTATTCATAAATGTTGTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TAAGACATTCTTTCGCTAAGAAAATCTAATAGTTT
GTTTCAATACTTCCTTAGATGTACGAAAAA

>NC_013642|3|3|654148-654833|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATGTTTTTGCGACATCGGGCGGCGGGCGGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTTTTATACACACATTCGGAAAATTTCTTGTTGCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGGCGTCCTGAACAATTTTTGCCGACGCTTCAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GGGCTGAAAAATTTCCCATTTCGTTTTATCACCTCCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAAGGGGAGGATGATACTGAATGGATAGGGGAACTCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACCATTCATCCATTACAACCTCTTTGCCTCTAATTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGCACTTTTACGTCCGGATTTGTGAACACGACTTCCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAAAGCATACGCTCCAAAACGTGAACAAATTCTCTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTTGGACGACGATCTTGTATTCATAAATGTTGTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TAAGACATTCTTTCGCTAAGAAAATCTAATAGTTT
GTTTCAATACTTCCTTAGATGTACGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_004082427.1\|650413_651178_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|378975
NC_013642.1\|WP_004082425.1\|648688_648889_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_013642.1\|WP_012896084.1\|664045_664882_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_013642.1\|WP_004082428.1\|651161_651911_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224769
NC_013642.1\|WP_004082424.1\|647288_648455_-\|type-III-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143482
NC_013642.1\|WP_004082447.1\|660357_662181_-\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|224806
NC_013642.1\|WP_012896081.1\|654882_656835_-\|IGHMBP2-family-helicase	unknown	unknown	gnl\|CDD\|273041
NC_013642.1\|WP_012896079.1\|643293_645678_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379314
NC_013642.1\|WP_012896083.1\|659932_660361_-\|DUF2202-domain-containing-protein	unknown	unknown	gnl\|CDD\|224548
NC_013642.1\|WP_004082421.1\|645777_646593_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|131023
NC_013642.1\|WP_004082448.1\|662199_662580_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225945
NC_013642.1\|WP_004082422.1\|646597_646873_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223920
NC_013642.1\|WP_004082449.1\|662582_663071_-\|NADH-dehydrogenase	unknown	unknown	gnl\|CDD\|224817
NC_013642.1\|WP_011943483.1\|663274_664036_+\|FprA-family-A-type-flavoprotein	unknown	unknown	gnl\|CDD\|223503
NC_013642.1\|WP_004082423.1\|646888_647287_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NC_013642.1\|WP_012896082.1\|657872_659189_-\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NC_013642.1\|WP_004082426.1\|648986_650381_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_013642.1\|WP_011943485.1\|659222_659897_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NC_013642.1\|WP_012310829.1\|656831_657869_-\|dipeptide-epimerase	unknown	unknown	gnl\|CDD\|239435
NC_013642.1\|WP_012896080.1\|651985_653512_+\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_004082427.1\|650413_651178_+\|metallophosphoesterase-family-protein	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	3.46972e-27
NC_013642.1\|WP_004082425.1\|648688_648889_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.68316e-32
NC_013642.1\|WP_012896084.1\|664045_664882_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.35734e-50
NC_013642.1\|WP_004082428.1\|651161_651911_-\|radical-SAM-protein	gnl\|CDD\|224769	COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown].	5.19577e-130
NC_013642.1\|WP_004082424.1\|647288_648455_-\|type-III-PLP-dependent-enzyme	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	2.16025e-174
NC_013642.1\|WP_004082447.1\|660357_662181_-\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NC_013642.1\|WP_012896081.1\|654882_656835_-\|IGHMBP2-family-helicase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_013642.1\|WP_012896079.1\|643293_645678_-\|AAA-family-ATPase	gnl\|CDD\|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NC_013642.1\|WP_012896083.1\|659932_660361_-\|DUF2202-domain-containing-protein	gnl\|CDD\|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	7.39805e-25
NC_013642.1\|WP_004082421.1\|645777_646593_+\|septum-site-determining-protein-MinD	gnl\|CDD\|131023	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division].	2.19095e-148
NC_013642.1\|WP_004082448.1\|662199_662580_-\|hypothetical-protein	gnl\|CDD\|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	2.20196e-22
NC_013642.1\|WP_004082422.1\|646597_646873_+\|hypothetical-protein	gnl\|CDD\|223920	COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning].	0.000615691
NC_013642.1\|WP_004082449.1\|662582_663071_-\|NADH-dehydrogenase	gnl\|CDD\|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	1.62385e-76
NC_013642.1\|WP_011943483.1\|663274_664036_+\|FprA-family-A-type-flavoprotein	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	2.07326e-77
NC_013642.1\|WP_004082423.1\|646888_647287_+\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	1.4098e-72
NC_013642.1\|WP_012896082.1\|657872_659189_-\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	6.64293e-25
NC_013642.1\|WP_004082426.1\|648986_650381_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_013642.1\|WP_011943485.1\|659222_659897_+\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	4.61462e-73
NC_013642.1\|WP_012310829.1\|656831_657869_-\|dipeptide-epimerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	2.84691e-127
NC_013642.1\|WP_012896080.1\|651985_653512_+\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0

>NC_013642.1|WP_012896080.1|651985_653512_+|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MRKFLVILLALLITALLLGARLTILHVNDTHGHAWAFDEYRNPGIGGLATIATIVEEVKREVESQGGYVIFLHAGDLNTGVPESDLQDAIPDIVGFNMMGLKAMAVGNHEFDNPREVLEKQMKFADFPFLSANIVKEDGEPFFKPYIVEDLGELKIAIIGFTTEETEILEPLYLEGLKFENALKVAQKIAPELKKQADVVIALAHLDWGEPKKEDITTTHQLAGVEGIDVVIAGHSHVLGSDVVEGKIIASAGEYGKYVGRLDLDIEDGKIVAWHWEAIPVNLKVYENEKYRYLGKPYLENRYVAKALEYFKKVGNEKLDTVIGETKIYLDGEREHVRSKSTNLANLIVDAMRWKVGADIAFTNGGGIRASIKPGKITVRDILTVLPFGNTLYVLELTGEQIMKVLEYAATIPEGKGAFLQVSGLTWKSKDGKVVEVLVNGEPLDPEKKYKVVTNNYMAGGGDGYVMFKEWDGYDTGYLMSDAVIEYIQNVLNGKIEEYDDSQRYVRE
>NC_013642.1|WP_004082428.1|651161_651911_-|radical-SAM-protein
MTVDPSHTIPVSVTGAFCSLNCPHCGAHYLRHMISVDEIPALVKKGYRSFLISGGMLPDGSIPFEKYYEHLKELKESHGLLYNFHVGFQKSKVAKELADVVSMDFFGDETVLKSIYGLALTPQEILDIAHFYENVVFHITVGITGGKITHEEKALEILSQETDTVVLNVFIPTPGTKFGKSFPPDLQEVVKLFEKARKLFKRVILGCMQPRGEYRKKLQSELKDLVDVITKPVGGTGEFKGCCAFIGRG
>NC_013642.1|WP_004082427.1|650413_651178_+|metallophosphoesterase-family-protein
MRLAFFGDVHGNFEALKAVLEDMENKGVDEVFCLGDLVGYGPDPEAVVQTIMEKNIKTIMGNYDDAVGYSKESCGCSYAPGRETEVGDISLKWSIENTSEKTREFLRNLPKKLSFEVEGVRFLLVHGSPLNELLEYVKPNTPPDRLKKIVESVEENVVVNGHTHLPMVKWVMGKLVLNPGSAGRPKDGDPRASYMIVDVENGTVSFEIVRVRYDVKTTVEKIARNGLPVELATVLALGQTFDMGPGKVTFTLGR
>NC_013642.1|WP_004082426.1|648986_650381_+|glutamate--tRNA-ligase
MVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLKKT
>NC_013642.1|WP_004082425.1|648688_648889_+|cold-shock-protein
MRGTVKWFDSKKGYGFITMENGEDIFVHWSAIQMDGFKTLRENETVEFEVQKGTKGPQAVNVRPVR
>NC_013642.1|WP_004082424.1|647288_648455_-|type-III-PLP-dependent-enzyme
MMEYWIRRALEVVKTPFLLFDLSVVEKKYLEMKAALKKADIYYAVKANSHPRIISLLARLGSNFDVASKGEIEKLLALGVDGKRMSFGNTIKREEDIAFAYKNGIRLFAVDSEMEVEKVAINAPGSFVFVRVETDGADADWPLSRKFGTNPEHALQLLSYASKMKLIPAGLSFHVGSQNLNPESWKKAIEIAGRVFKKAMRSGLNLFLLNVGGGFPVQHTKPIPSMEEIGKAIEEAIDENLWFVHNLKVIAEPGRYMVGEAGWLVTKVLLKSERSGEKWVYIDAGVFHGLAETIQNFEYEIRVLGKEREELEEYHLAGPTCDSVDVIYDRIFLPKSITLNDLVCFINAGAYTVEYNTRFNGIEPPKMVFIEELTEISIEEKIKTRVLD
>NC_013642.1|WP_004082423.1|646888_647287_+|YjbQ-family-protein
MLKRLTVRTSSRTQFVDITSEIVKFIEESKVRNGICVVFVPHTTAGITINENADPSVRQDIMNTLNKLVPPSAGYTHLEGNADSHIKASLVGSSVTLIIENGRPLLGTWQGIYFCEFDGPRTRSVYVKIVEG
>NC_013642.1|WP_004082422.1|646597_646873_+|hypothetical-protein
MKFLFWEFGKKNKSRETAKKRLEQIVGTTKRRQMNITEIIPKEILDKNSDKIKERIASWLSETFNVEKEKIKIDLEEREGHVVIITNVFFK
>NC_013642.1|WP_004082421.1|645777_646593_+|septum-site-determining-protein-MinD
MGNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTMIDVVNGKVSPQEALVKHKMLKNLYLLPASQIATKEMISPNDMKAIVKELIPHFDYIIIDSPAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIINRFKPHMVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIPVSLNGNSRISKNFENLARRIRGEGVPLENDFVTVSKGLIDTLKDFFSKLKRG
>NC_013642.1|WP_012896079.1|643293_645678_-|AAA-family-ATPase
MIRKLRPDEINSFDLDFLNFQTTEEVPPNEGFIGQKRAKEAIETGIRIREKGYNIFVTGMTGTGRRTFVQMMLQDVAKKLPAPNDWGYVYNFENPYEPKAISFKAGQGRRFKKRLEDLINEVVEALNKSFESEEFARKISEMEEKYALMRKQLWESLEAKASELGFVVQLTPAGVVMLPVVDGKPLPPEAVNALPDQAKREIEERQMKLKHLVDGTLYRIRKLDIEFRKSLEEFHKRTALFAIDPLFVEVESEFENEGVKEFLESVKKDIVENLLDFLRMDARERKEIYMRKYSLNLIVDNSDLTGAPVIYETNPTYSNLFGKIEYYVRGGFLHTDFSMIRPGSVHKANGGFLIVEAERLLSQPYAWYNLKRVLMESQISVENLEHTLGVSNTITLKPEKIPLDLKVVIIGTPYLYELLYELDPDFRKLFRIKAEFDWEIPRNELNVQKYVSFISSVCREKNLPHFDRGAVKRVIWYAMRNAGNSTKLSAVFGDIVNLIVESGELARLEGAEVTTSDHVLKAYQAMENRRNLLEEKYDEMIKTFDLMIEVTGSKVGQINGLTVLDLGDHSFGVPVKITAKVYLGRPGVVDIQREADLSGKIHSKAVLILEGFLGSRYAQDFPLSVSASISFEQVYSEVEGDSASLAEALALLSAISKVPIKQGIAVTGSINQHGEVQPVGGIVEKVEGFYRACKTRGFDGEQGVIIPKANAKNLVLKDEIIQAMKKGLFHIWTVETIDDAIEIVMGMKAGRVTKTGKFERNSVNYLVYRELKKMKKLLDGVPEERKKKKRKGKK
>NC_013642.1|WP_012896081.1|654882_656835_-|IGHMBP2-family-helicase
MTVQQFIKKLVRLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSPEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIANRIVREAQVVLSTNSSAALEIISGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMAFPSEEFYDGKLKAAEEVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKENWIGIITPYDDQVNLIRELIEEKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIF
>NC_013642.1|WP_012310829.1|656831_657869_-|dipeptide-epimerase
MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTPKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVKIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ
>NC_013642.1|WP_012896082.1|657872_659189_-|transglutaminase-domain-containing-protein
MEFLIYSLPEEVLREEMLGNFSVALKLIDDFLKKDLPLLQRERLIYEKERIERLLEDYPFTEKEAMEKMREMFEGFSEGEFQYLMNEGVLDYIVVEGEKRFERRFFHNLAFVRSEYRERLRKDERSEKARRILHERLERLIKGEDPKRYRIRARITLKLKETSSKHRVWLPFPKEGLQIESVKLLRTSHKSYYISPNDVPQRTIYFEGEDSTFFVEFEYIVREWVNHVDPERVSEKVVGFEEFLKEEPPHIVFTPKLRWLTQTVVGSEVNPYLKAKRIYDWITLNVRYSYVKPYALYENITDFVVNNLKGDCGFQALLFITMCRIAGVPARWQSGWYINPIFGSPHDWALFYVEPYGWLPADLSFGGARRDNESFRSFYFGNLDGFRMVANDGFMKDFDPKTRFVRSDPTDNQVGEAESEEKRLPFESTIEVISFEEV
>NC_013642.1|WP_011943485.1|659222_659897_+|cyclase-family-protein
MFIELSYPIEERMLTYPDNPPDYFEPKSRIEQGDAANTMMIHHFSHTGTHVDAPYHFCEEGWTLDQIPLEYFIFEKPLLVDREKKPMELFTIEDIEELDLNGVDLLMFRSGFAKLRRTDPATYRYMFPGISKELARFLRESVPSLKAVMLDFLSADPIVLGEKENYPAHRWLLSKKFSSKRPIIIFEDVNLEPVAGKKIKRVIALPLRFKGLDGGPVSVLAEVE
>NC_013642.1|WP_012896083.1|659932_660361_-|DUF2202-domain-containing-protein
MIGPRDLLNIALRIESTGYSYYKNLAEKTEGETKALFERLAEQERDHSRKFKEILEKYEQDLNPSDEVLGYLEALAEISIFPKLEETPPDDLREAVRRAIEVEKDSIVFYSEILSYVPEKEPVQAIIDEEKKHLRDLLRLEV
>NC_013642.1|WP_004082447.1|660357_662181_-|NADH-quinone-oxidoreductase-subunit-NuoF
MPLTTNTILICAGGACISAGEKSVKDAFEEELRKYGLDEVVRVIETGCMGACTLGPIAVIYPESVFYQKLTPDAAREIVEEHILKGRIVEKYLYKASEGKPVPRVHEEVPFFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAGFPTGLKWELAARQKAEKKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQKGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETALMASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGDKKLKAIQTGGPSGGCIPAEYVDTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKMLEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVKEKRCPSKKCKALISYVIDPEKCVGCTACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVTPALPVEEAVE
>NC_013642.1|WP_004082448.1|662199_662580_-|hypothetical-protein
MAKVKSLEELMKIKEQALKDLQLRGETGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNINDIAVVQSGCMGLCEVEPTVEVRLEGQEPVIYGRVTPENAKRIVKMHILEGRVVEDLVVKRGEA
>NC_013642.1|WP_004082449.1|662582_663071_-|NADH-dehydrogenase
MVKSKEELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKREG
>NC_013642.1|WP_011943483.1|663274_664036_+|FprA-family-A-type-flavoprotein
MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNTACKKWVDMVSKRKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSL
>NC_013642.1|WP_012896084.1|664045_664882_+|methyl-accepting-chemotaxis-protein
MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDGATKVLEETAGGFTIINRVINSVITAQRKLKDLKI

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Crispr_ID: NC_013642_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_4

1025628-1026846

TypeV

III-A

Consensus_repeat	Method
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRT

18 spacers

The CRISPR arrays of NC_013642_4

>merge|NC_013642|4|1025628-1026846|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAACCAGTAGATGAACCACTCTTGATCCGACTTTTCCCGTTTCAATAGTTCCTTAGAGGTATGGAAACATGGACGTGTGAAAATAATTGCAGAGGCCGTAACAAAGTTTCAATAGTTCCTTAGAGGTATGGAAACTACTGGAGTTCTGCTTCTCCTGTCGTACGTCCCGTTTGTTTCAATAGTTCCTTAGAGGTATGGAAACTGTACTCTCCAGCGAGCATAAAAGCGAACGCGAAAGGTTTCAATAGTTCCTTAGAGGTATGGAAACACTCGATGAAGAAAAAAATGCCCCTCAAGAAAGCCAAGTTTCAATAGTTCCTTAGAGGTATGGAAACTGTGATAAAGAAATTGTACGGTTCAGTAGATAAGCTGGTTTCAATAGTTCCTTAGAGGTATGGAAACATGGCTGCCTTCCCTGCCTGGTCGTTGTCGAAGGCGTTTCAATAGTTCCTTAGAGGTATGGAAACCGAACCGCTTTGTAACGTAGATGTAACTTGACATAGTTTCAATAGTTCCTTAGAGGTATGGAAACACGTTCAAATCGAAAAGAAACCCTTCCCCACCTCCTGTTTCAATAGTTCCTTAGAGGTATGGAAACACGCAAGACGACATCAGGCAGGGAACCTGCAAAGTAAGTTTCAATAGTTCCTTAGAGGTATGGAAACTGCATTTTATGACTTTCGGCGAGTTCGTCCAGTTGGTTTCAATAGTTCCTTAGAGGTATGGAAACTATCTCCTCCGATGGCGGGAGCTGCGGAGTCGAGGAGTTTCAATAGTTCCTTAGAGGTATGGAAACAGGAAAGTTCCTTGTATACTCAGTCGAGCACAGCCTGTTTCAATAGTTCCTTAGAGGTATGGAAACTGACAGAGACATGCAAGATGAGGAGATAAACACATAGTTTCAATAGTTCCTTAGAGGTATGGAAACTCGGTTTCTGGATTCATTGCCGCAGCAACCCATGTACGTTTCAATAGTTCCTTAGAGGTATGGAAACTTCCCATGTTGGTTACTACCACTAAACTCTTATCGCTGTTTCAATAGTTCCTTAGAGGTATGGAAACACTATTCACCCGAAAATCCTGACGAATGGTCTCAACGTTTCAATAATTCCTTAGAGGTATGGAAACGCTGTTTTGTAGAATGCCCGGTATAGACATCTTAAGTTTCAATACTTCCTTAGAGGCATGGAAAT

>NC_013642|4|4|1025628-1026781|PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CAGTAGATGAACCACTCTTGATCCGACTTTTCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGGACGTGTGAAAATAATTGCAGAGGCCGTAACAAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TACTGGAGTTCTGCTTCTCCTGTCGTACGTCCCGTTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTACTCTCCAGCGAGCATAAAAGCGAACGCGAAAG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTCGATGAAGAAAAAAATGCCCCTCAAGAAAGCCAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGATAAAGAAATTGTACGGTTCAGTAGATAAGCTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGGCTGCCTTCCCTGCCTGGTCGTTGTCGAAGGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGAACCGCTTTGTAACGTAGATGTAACTTGACATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGTTCAAATCGAAAAGAAACCCTTCCCCACCTCCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGCAAGACGACATCAGGCAGGGAACCTGCAAAGTAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGCATTTTATGACTTTCGGCGAGTTCGTCCAGTTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATCTCCTCCGATGGCGGGAGCTGCGGAGTCGAGGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGAAAGTTCCTTGTATACTCAGTCGAGCACAGCCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGACAGAGACATGCAAGATGAGGAGATAAACACATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCGGTTTCTGGATTCATTGCCGCAGCAACCCATGTAC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTCCCATGTTGGTTACTACCACTAAACTCTTATCGCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTATTCACCCGAAAATCCTGACGAATGGTCTCAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_013642|4|4|1025628-1026846|CRISPRCasFinder
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CAGTAGATGAACCACTCTTGATCCGACTTTTCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGGACGTGTGAAAATAATTGCAGAGGCCGTAACAAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TACTGGAGTTCTGCTTCTCCTGTCGTACGTCCCGTTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTACTCTCCAGCGAGCATAAAAGCGAACGCGAAAG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTCGATGAAGAAAAAAATGCCCCTCAAGAAAGCCAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGATAAAGAAATTGTACGGTTCAGTAGATAAGCTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGGCTGCCTTCCCTGCCTGGTCGTTGTCGAAGGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGAACCGCTTTGTAACGTAGATGTAACTTGACATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGTTCAAATCGAAAAGAAACCCTTCCCCACCTCCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGCAAGACGACATCAGGCAGGGAACCTGCAAAGTAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGCATTTTATGACTTTCGGCGAGTTCGTCCAGTTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATCTCCTCCGATGGCGGGAGCTGCGGAGTCGAGGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGAAAGTTCCTTGTATACTCAGTCGAGCACAGCCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGACAGAGACATGCAAGATGAGGAGATAAACACATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCGGTTTCTGGATTCATTGCCGCAGCAACCCATGTAC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTCCCATGTTGGTTACTACCACTAAACTCTTATCGCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTATTCACCCGAAAATCCTGACGAATGGTCTCAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTGTTTTGTAGAATGCCCGGTATAGACATCTTAA
GTTTCAATACTTCCTTAGAGGCATGGAAAT

>NC_013642|4|4|1025628-1026846|CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CAGTAGATGAACCACTCTTGATCCGACTTTTCCC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGGACGTGTGAAAATAATTGCAGAGGCCGTAACAAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TACTGGAGTTCTGCTTCTCCTGTCGTACGTCCCGTTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTACTCTCCAGCGAGCATAAAAGCGAACGCGAAAG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTCGATGAAGAAAAAAATGCCCCTCAAGAAAGCCAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGTGATAAAGAAATTGTACGGTTCAGTAGATAAGCTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATGGCTGCCTTCCCTGCCTGGTCGTTGTCGAAGGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGAACCGCTTTGTAACGTAGATGTAACTTGACATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGTTCAAATCGAAAAGAAACCCTTCCCCACCTCCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACGCAAGACGACATCAGGCAGGGAACCTGCAAAGTAA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGCATTTTATGACTTTCGGCGAGTTCGTCCAGTTG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATCTCCTCCGATGGCGGGAGCTGCGGAGTCGAGGA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGGAAAGTTCCTTGTATACTCAGTCGAGCACAGCCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGACAGAGACATGCAAGATGAGGAGATAAACACATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCGGTTTCTGGATTCATTGCCGCAGCAACCCATGTAC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTCCCATGTTGGTTACTACCACTAAACTCTTATCGCT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ACTATTCACCCGAAAATCCTGACGAATGGTCTCAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTGTTTTGTAGAATGCCCGGTATAGACATCTTAA
GTTTCAATACTTCCTTAGAGGCATGGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_010865201.1\|1037266_1037656_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NC_013642.1\|WP_012896290.1\|1035961_1037032_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_013642.1\|WP_004083158.1\|1034830_1035037_+\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_012896285.1\|1022499_1023978_+\|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	unknown	unknown	gnl\|CDD\|172457
NC_013642.1\|WP_012310630.1\|1029821_1031084_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|367035
NC_013642.1\|WP_012896284.1\|1019401_1020667_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NC_013642.1\|WP_012896286.1\|1024401_1025004_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|280058
NC_013642.1\|WP_011943186.1\|1032253_1033459_+\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236182
NC_013642.1\|WP_012896287.1\|1031099_1032086_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_013642.1\|WP_012896283.1\|1016132_1017374_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_013642.1\|WP_011943195.1\|1020663_1021425_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
NC_013642.1\|WP_012310631.1\|1028817_1029825_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_013642.1\|WP_008193575.1\|1028116_1028821_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_013642.1\|WP_011943190.1\|1026915_1028130_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NC_013642.1\|WP_004083125.1\|1017630_1018647_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|181535
NC_013642.1\|WP_004083127.1\|1018643_1019405_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|223364
NC_013642.1\|WP_011943192.1\|1023974_1024409_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NC_013642.1\|WP_041434675.1\|1035039_1035948_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NC_013642.1\|WP_011943194.1\|1021421_1022552_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|272865
NC_013642.1\|WP_012896282.1\|1015943_1016120_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_010865201.1\|1037266_1037656_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.85602e-50
NC_013642.1\|WP_012896290.1\|1035961_1037032_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.76968e-21
NC_013642.1\|WP_012896285.1\|1022499_1023978_+\|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	gnl\|CDD\|172457	PRK13951, PRK13951, bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB.	0
NC_013642.1\|WP_012310630.1\|1029821_1031084_-\|TolC-family-protein	gnl\|CDD\|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	1.87512e-11
NC_013642.1\|WP_012896284.1\|1019401_1020667_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_013642.1\|WP_012896286.1\|1024401_1025004_-\|LysE-family-transporter	gnl\|CDD\|280058	pfam01810, LysE, LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.	6.27827e-38
NC_013642.1\|WP_011943186.1\|1032253_1033459_+\|threonine-ammonia-lyase	gnl\|CDD\|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NC_013642.1\|WP_012896287.1\|1031099_1032086_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	9.04224e-16
NC_013642.1\|WP_012896283.1\|1016132_1017374_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.42345e-72
NC_013642.1\|WP_011943195.1\|1020663_1021425_+\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	1.6478e-82
NC_013642.1\|WP_012310631.1\|1028817_1029825_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.16165e-34
NC_013642.1\|WP_008193575.1\|1028116_1028821_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.69942e-125
NC_013642.1\|WP_011943190.1\|1026915_1028130_-\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	2.45826e-51
NC_013642.1\|WP_004083125.1\|1017630_1018647_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	0
NC_013642.1\|WP_004083127.1\|1018643_1019405_+\|prephenate-dehydrogenase	gnl\|CDD\|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	9.77158e-66
NC_013642.1\|WP_011943192.1\|1023974_1024409_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	5.66011e-87
NC_013642.1\|WP_041434675.1\|1035039_1035948_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.47544e-92
NC_013642.1\|WP_011943194.1\|1021421_1022552_+\|chorismate-synthase	gnl\|CDD\|272865	TIGR00033, Chorismate_synthase, chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation. [Amino acid biosynthesis, Aromatic amino acid family].	6.61219e-168

>NC_013642.1|WP_012896286.1|1024401_1025004_-|LysE-family-transporter
MISIFFGSFLVGLSGAVAPGPLMMIAISQSAKGWKNSIKLISGHVVLEAFLVLLLVLGFQWVLKSPLVTKVIGLLGGSFLAFMGVSQLTAIKGEISQVEKNDLKIPLPITGALVSLSNPYFLLWWMSVGSAFLVKAQTSFLAGVTAFYFGHILSDILWYSLIGVFGNTILKSSRIYKIVMAVTGLFLIGFGLFFVLDSFR
>NC_013642.1|WP_011943192.1|1023974_1024409_+|type-II-3-dehydroquinate-dehydratase
MKVLVVNGPNLNMLGKRDKNIYGNFSHEDLVKMIEDWGRKNDVEVEVFQSNHEGEILDRLHRLDFDGLVINPGAFTHYSYAIRDALEIVKVPKVEVHISNIHRREEFRRRSVTAEVCDGQISGLGVYGYLLALEYIKKKLEELT
>NC_013642.1|WP_012896285.1|1022499_1023978_+|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB
MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWEKRKQFYAEFRRIDTSKLNEWETTALVVLEALDEKEISTIEKPHLVKIILGGFKRVRNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGVELFDEPEKIEKRNLRVLSEMVKISVEDKARIVMEDPYDMGLRHALNLGHTLGHVYEMLEGVPHGIAVAWGIEKETMYLYRKGIVPKETMRWIVEKVKQIVPIPVPSVDVEKARNLILNDKKILKGSRVRLPYVKEIGKIEFLEVDPLELLEVVD
>NC_013642.1|WP_011943194.1|1021421_1022552_+|chorismate-synthase
MRLTIAGDSHGKYMIAVLEGIPAGLKIDEEIIRRELFRRRNCYGRGKRMSMEEDAFEIVSGVWGGITTGAPVTILVPNKAGNPVKDVRSVPRPGHIDYAAFVKYKLPDLNVYVERSSARWTVALTAAGALLKSLLREFNIDVLGFVTRLGNVEAKNIPDNFEELRRKRDESAVFCPDPEATEGMISEIDRAKEEGNTLGGKVKVIARGVPAGIGSYSDLFKKLDSKIGSLFFAIPAVKGVVIGSEEMWYGFDYLDEFELEDGRIKRRTNNLGGIEGGITNGEDVWVNVFVKPIPTTGKPLNSVDLRTMEPAKTPYVRSDVTAVPPASVVCEAALAVVISDALLEHLGDGNIDDLKRRFGNENLPRWDDGFWKEYDR
>NC_013642.1|WP_011943195.1|1020663_1021425_+|shikimate-dehydrogenase
MKFCIIGYPVSHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYDGFNATIPHKERVMRYVEPSEDAQRIKAVNCVFRGKGYNTDWVGVVKSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEKLTVSEASLKGLYLVYDVVYFETPLVSDAKRLGVEHVVKGNLMFYYQAMENLKIWGIYDERSFKEVFEEVLR
>NC_013642.1|WP_012896284.1|1019401_1020667_+|3-phosphoshikimate-1-carboxyvinyltransferase
MKVLPAKKVEGVLSVPPDKSITHRALILSALAETESTLYNLLRCLDTERTHDILEKLGTRFEGDWEKMKVFPKPFAEPIEPLFCGNSGTTTRLMSGVLASYEMFTVLYGDSSLSRRPMRRVIEPLEMMGARFMARQNNYLPMAIKGNHLSGIRYKTPVASAQVKSAVLLAGLRASGRTIVIEPAKSRDHTERMLKNLGVPVEVEGTRVVLEPATFRGFTMKVPGDISSAAFFVVLGAIHPNARITVTDVGLNPTRTGLLEVMKLMGANLEWEITEENLEPIGTVRVETSPNLKGVVVPEHLVPLMIDELPLVALLGVFAEGETVVRNAEELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQSIKGGSVDPEGDHRMAMLFSIAGLVSEEGVDVKDHECVAVSFPNFYELLERVVIS
>NC_013642.1|WP_004083127.1|1018643_1019405_+|prephenate-dehydrogenase
MKISVLGAGCIGGSIALKLKEKHHVTAFDRDEETMKALEENGIETVSKESDLYDTDLLVLALPMSVEERFLKETDFSGKILDVASVKTPFMEIARERGLNFTGGHPMAGNERKGKSGWDREMFDGKIFFLCSLDGKEDGMIENIVKDLGARPLWIDYRIHDEIVAAVSHVQYLISLSARYVGKPFEEYAGPGYLSNTRLSKQNMEMALDMIRYNKENILKYLENARNFLNVLYHLTEKEDFENLKKVIREVIS
>NC_013642.1|WP_004083125.1|1017630_1018647_+|3-deoxy-7-phosphoheptulonate-synthase
MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN
>NC_013642.1|WP_012896283.1|1016132_1017374_+|MFS-transporter
MNELLHWKRNFFLLALGRFVSILGSSIQAVAIPLFVLDLTHSGSAVALMTVAYMVPRILFTPIAGIVGDRGDRKFLMVSMDFLRGALICFLALLAFKNSITLPVLYVSQVAMAIMDNLFDIPTGAMFPDIVPQDFLMRANSIMGMVRIFPQILGPALGGVIYGFYGIAIVFLVNGVSFILSAISEIFIVYSRKVEKKPAKFSQILEDLKEGFLFIWNHDLIRTILIFALFLNLLISPLFMVVYPYTIREVMKFSAQEFGFLETSFTLGALLGNFLIASYLSKKNMWKAMKISIFLFELPIVFLGFLVMPDFSLNRLVLFSLFFITFLIMGFLNPIINVPLDTAFQKMTPSHIRARAFSFLILVANGVTPLGSVLYGYLVDRVPVHFLYYIVGALSFLVAVLLLVALRGKELPT
>NC_013642.1|WP_012896282.1|1015943_1016120_+|hypothetical-protein
MKVYLMVSTILVVVLFSLIWLYVLFFPAVEMVPSSPAVWEPGMTETSSAMVPGSLQSR
>NC_013642.1|WP_011943190.1|1026915_1028130_-|FtsX-like-permease-family-protein
MEILKEVLRSLLANKMRTFLSMLGIVIGVTAVIMVMSLGAGMKESVTERLTSLGSNIIMITPGFTGGRGGTIAQSVESLEEDDVEDILKMCPSVDKAIGLVNGSFLVQYRETNTRSNVYSAPADIFHILNLKVSSGRTFSQEDNTANVAIIGQEVAYNLFGNENPLGKKIYLVQGNRKLVFEIIGIFERTGSILMFNPDNMILIPYETGKFRVFQTHGKVSMILATSKSADVAQRAVMEIDHLLYTKFHEEESYYNIISQQAILNVVSESVSIINLVLVAITAVSLIVGGIGIMNIMLVSVVERTREIGIKMAIGASRLRILLEFLVESVVITFVAGAIGVALGILGSNTIVNTFGSQYGLKAVIDPLSVIVAFGVSASVGLFFGFYPAYRASRLSPIEALRYE
>NC_013642.1|WP_008193575.1|1028116_1028821_-|ABC-transporter-ATP-binding-protein
MKKVMELVDVWKIYDLGEVKVEALRGVSFEVFEGEYVIIIGPSGSGKSTLLHILGCLDRPTKGKVLIEGEEVSRMGDRRLAQVRNRKIGFVFQSYNLLPRLTALENVELPMIYAGVPAKERKRRAKELLELVGLGDRLHHRPNQLSGGQQQRVAIARALANDPVFILADEPTGNLDTKTGEEILELFRKLHEMGKTLVVVTHNLEMVDEGTCIVRIRDGKIEGVERRGVVYGDT
>NC_013642.1|WP_012310631.1|1028817_1029825_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKWITLLIIAVLVVLVIVVIFLNRASAQTVSEKDATSTQAPVYLTYTVTKENETVEIVGQVTADTKKVTSKVSGDVLEIYVEEGDVVQVGQKIAKIDDTDYQISYLSALNSYKTSPTEINRLNLEKAKENLENTTVVSPVNGVVQSVNVDVGDSVSVGTSIVTIVETDTLRVEGSISEYDLKNVKEGMKAVFTFEQLGLTLTGKVKRISPVAETSGGVTVIPVEFSFDQIPPSLVIPGLTCDVEIIIKEATSSFFVPKEAVSQDQNGYYVMKQTPQGPQKVYVEVGEELNDKIEIKKGVSEGDVLLLIPSQQEIQRLRTRQGLPMFGPGGGRAR
>NC_013642.1|WP_012310630.1|1029821_1031084_-|TolC-family-protein
MKRFFLVFLLVPVFLVGNVFDLFEENLKNSSGYWSSVEKFKEAQLNYKRYTNFWNPEISVSLGKTGITITEDGISDFSISPIVNFVNIYGFELGLSFPISVNTDDWSFNFEGTQLSVSRNLKTEYTVDKLKTEANYLSSKYSLKSTKNSIFIQTVQDIFDWYYYTKKIEILSQRLQVLNEKLSKAKDDDEKKALEKQILSTEQTLRSAEYSLQTIQTKNIDEEVYQKTRKFLEGVTLPATTLEYREDLKALELQKKAEEIEKKTWFLPYLPELTFSFNYDFEDSEWSIGIGFQMTLWDFGERKLEAEKRKSQLVSLEYQEKVRNIENSLSQELVNIANLESQLRQKEIELEDLEESSKTNDQLFRKGFLSEEDYTLSKLDYVEGTLEKENLENSLILEKLKYISILGYDLEKFLKEGDQN
>NC_013642.1|WP_012896287.1|1031099_1032086_-|TolC-family-protein
MKNLFVVLLSLVSVLSFSVSLNDVLQTALASSTDYQIAQINLESATMDYEKAKLEATNKRSELSAELSYYNNLQSYRNSLKSAYQDVLGRIFNLLTADLSYEIAQLNFENAQEDYKTSQELFKKNLISENDLKDSELTLEEASNNLLSAQKDLEEAQKDYEEIFSVEVSEIELPLIDYQNLVSEDEYLDNLSSVKIAELNMKIAEYDLNNLSASASKYEQKKAELNYKKSKMNYDEALKEAKDSYKSTLDSLEIAFLNLKVLKEKVDLNENILKDYQERYEKGLISKKELNTQKINLLNTKKNYFNSLRSYYTSIVNFLIDTGKEVSF
>NC_013642.1|WP_011943186.1|1032253_1033459_+|threonine-ammonia-lyase
MITLEDIKEAQRTLKNVVHRTALAYSSVLSEVTGGEIYLKMENLQKTGSFKIRGAYNKIAHLSEEERKRGVVAASAGNHAQGVALAAQIFGIPATIVMPKYAPLSKITKTRNLGAQVILEGNIFDEAYEAALRIQEKTGAVFVHPFNDPHVIAGQGTIGLEIMEDLPDVEVVVVPVGGGGLISGVSVAIKSMNPEVKVIGVQTENMPSMIASLRRGRAERVEGKPTLADGIAVKKPGDLTFELVKKYVDEMVVVNEEEIADAILFLLEQAKVVAEGAGAVGVAAVLNKLDVKGKKVAIVISGGNIDVNMIDRIINKGLVKSGRKVFIETFVMDRPGALKELLGIVAELGANVLSVFHNRSAKEVPIGFAKIELELETVDEKHVEEIERVLIAKGYEVRIVV
>NC_013642.1|WP_004083158.1|1034830_1035037_+|hypothetical-protein
MRFVSDFLFFAGFGLLFIAIVFFDLGTRAIKKKQNQKKKFYDKKGWQFLSVSLGAFAVSILLALIGRG
>NC_013642.1|WP_041434675.1|1035039_1035948_+|diacylglycerol-kinase-family-lipid-kinase
MVFLIYNPAAGGGRAGKIWDRVEDLLKKHGIDHKVAFTKRPGHAMEISKKAFKEGYRRIAAFGGDGTVNEVVNGIFLNGYDLREVVFGWIPFGSGKDWARTIGVPLEIEEAIKTLKDGKEFVQDLGVGEYEKASGEIEKRAFVNVAGLFFDGFVTYRTNLLKRKNRVSYFSRIFSSIIEYDPPTARIQIDEKVWEKRVFSMNVGICKYNGGGMNQLPHAVPDDGLLAVTVINDIGKLRILANLHRVFNGKLLEHPGVEGYQAKKVVVEFQRDEPVEFDGESFWAKKIFFSIIPGVIRVLVKK
>NC_013642.1|WP_012896290.1|1035961_1037032_-|glycosyltransferase-family-4-protein
MKIGFLSRWGATCGVGMHAEILAREFIRMGHEVVVFAPTEESASKEVKYYKRTEAQDPEFVKRETYTEVDNVTEEGWVKEEEILKENLDLLIIETFWRVPVKPLTRLIEKLKIPVISVFHEANIFKAKEVVKLPCDKIVVFDRRFYDEILEFYEIPREKVEVISYPVMKPYDVEPERPVSEDKFLFFSFGRQPVEEYCDFLNALKKLRKRFDNVHYWIIRSDGRVDYEAEWITQWQKRPTVEKLYSYLKGSNVHLLPKGNTPNVVVSSTLYQIIASETPIVIRDSRFVETIETDAYGFGPIVKYRNIHDLVHKLELLMLDREQVEDIKKEVRVFVEKYGGDKIAQEFLDLAKTITK
>NC_013642.1|WP_010865201.1|1037266_1037656_+|IS200/IS605-family-transposase
MHIKKTRWSHYNLNYHFVWIPKYRRKILVGSIAEELERILRNTAKQHGIEILALSIQPDHVHLFVSAPPRFSPAEIANLFKGVSARKLLEKFPELRTKEGLWARSYYVGTAGDVSEETIRRYIEECQDV

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Crispr_ID: NC_013642_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_5

1061493-1063309

TypeIII

Consensus_repeat	Method
GTTTTTATCTTCCTAAGAGGAATATGAAC	PILER-CR
GTTTTTATCTTCCTAAGAGGAATATGAAC	CRISPRCasFinder
GTTTTTATCTTCCTAAGAGGAATATGAAC	CRT

27 spacers

csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6,csa3

The CRISPR arrays of NC_013642_5

>merge|NC_013642|5|1061493-1063309|PILER-CR,CRISPRCasFinder,CRT
GTTTTTATCTTCCTAAGAGGAATATGAACTATCAGTCGTCTGAAGTTCCTGTCCCGTCTTTGGAGGTTTTTATCTTCCTAAGAGGAATATGAACTATTATATCCTCATATGGAATGCTCGCCCAGTTTTCGGTTTTTATCTTCCTAAGAGGAATATGAACTGCACTAATTACTTTCGGTGTTCCGGCAGGTAGATTATGGTTTTTATCTTCCTAAGAGGAATATGAACTCTCTGCAGGTGAGACAAAGACCTTCACGATCAATCTGGTTTTTATCTTCCTAAGAGGAATATGAACGAAAATATCCTCAGAATCAATGGGGCTTCTAACACCAGGTTTTTATCTTCCTAAGAGGAATATGAACTTCGAATGTTTCCCGCATCGTCTCGCCCCAGCTTCAGGTTTTTATCTTCCTAAGAGGAATATGAACAGGTAGTAGGTGAGAAGCACGTTGCTTGCAGGATCTTGTTTTTATCTTCCTAAGAGGAATATGAACATGGCAGGATGGGTTAGCTTTTGTCGAAACAACAAGGTTTTTATCTTCCTAAGAGGAATATGAACTGAAGCACGAAAGGCACTTAATATCCTGGAGCTCAAGTTTTTATCTTCCTAAGAGGAATATGAACTTAGCCTTTCTTATTCGTCTTACAGACAAACTTAACAGGTTTTTATCTTCCTAAGAGGAATATGAACTTCTTCTCGCTCTTTCGATCCTGCGGGTGGTGGGTTCCAAGCGTTTTTATCTTCCTAAGAGGAATATGAACTTTACTCCTGAATATGCTTCTTTCTTTTGTCTGCTTTTGTTTTTATCTTCCTAAGAGGAATATGAACAGGCTTGAGCTTGGGCACAACATTGAGGTTGGTCAAGTTTTTATCTTCCTAAGAGGAATATGAACCGAGAACTCTTAGAGCTTCCTTGACTCGTTCTTTTAAGTTTTTATCTTCCTAAGAGGAATATGAACGCAACTCGAAAGGTTTTTCTACAGAAAGCATGAGAACGTTTTTATCTTCCTAAGAGGAATATGAACGATTTGTCTTTCCCTTTTGTTCAATCTTTTGCCCTCGTTTTTATCTTCCTAAGAGGAATATGAACTCAGAAGATTCGCCGAGTGGTTCGGATCGCTCCCCAAAGTTTTTATCTTCCTAAGAGGAATATGAACCAGAACGACCTCCACGTATCCTGTCGGGTACACGATCGTTTTTATCTTCCTAAGAGGAATATGAACTGCAGAATCACATCAATGAGATTGAACAGCAACTCGAGTTTTTATCTTCCTAAGAGGAATATGAACAAAATTGTGGGAGGTGTTATCATGTGGAAAGTTTATGGTTTTTATCTTCCTAAGAGGAATATGAACGAAGAGTGGGGCAGAAAAGACCGCATGGACATCCAGGTTTTTATCTTCCTAAGAGGAATATGAACGAGGTGGTGTTGTGAACAGCCTGAACGGTCTTTCCTTGTTTTTATCTTCCTAAGAGGAATATGAACTTCCCGAGACAGCATTGGAGTCAGAGAGCGATCTTGTTTTTATCTTCCTAAGAGGAATATGAACTCGATCGCCTTCTGTCTTTTCTCAGACCCAGTTTCTCGTTTTTATCTTCCTAAGAGGAATATGAACTGGTAGAATATGCGTGGATGCATATGGATGAAAGGAGTTTTTATCTTCCTAAGAGGAATATGAACATTGTGACGTAGGGAAAAGTTGCGTCTGAAGGTACATGGTTTTTATCTTCCTAAGAGGAATATGAACAAGCCGAAGCAATTGCGCGTAACGTTGCGCTCATCCAGAGTTTTTATCTTCCTAAGAGGAATATGAAT

>NC_013642|5|5|1061493-1063309|PILER-CR
GTTTTTATCTTCCTAAGAGGAATATGAAC	TATCAGTCGTCTGAAGTTCCTGTCCCGTCTTTGGAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TATTATATCCTCATATGGAATGCTCGCCCAGTTTTCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCACTAATTACTTTCGGTGTTCCGGCAGGTAGATTATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCTCTGCAGGTGAGACAAAGACCTTCACGATCAATCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAAAATATCCTCAGAATCAATGGGGCTTCTAACACCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCGAATGTTTCCCGCATCGTCTCGCCCCAGCTTCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGTAGTAGGTGAGAAGCACGTTGCTTGCAGGATCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATGGCAGGATGGGTTAGCTTTTGTCGAAACAACAAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGAAGCACGAAAGGCACTTAATATCCTGGAGCTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTAGCCTTTCTTATTCGTCTTACAGACAAACTTAACAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCTTCTCGCTCTTTCGATCCTGCGGGTGGTGGGTTCCAAGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTTACTCCTGAATATGCTTCTTTCTTTTGTCTGCTTTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGCTTGAGCTTGGGCACAACATTGAGGTTGGTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CGAGAACTCTTAGAGCTTCCTTGACTCGTTCTTTTAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCAACTCGAAAGGTTTTTCTACAGAAAGCATGAGAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	GATTTGTCTTTCCCTTTTGTTCAATCTTTTGCCCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCAGAAGATTCGCCGAGTGGTTCGGATCGCTCCCCAAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGAACGACCTCCACGTATCCTGTCGGGTACACGATC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCAGAATCACATCAATGAGATTGAACAGCAACTCGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAAATTGTGGGAGGTGTTATCATGTGGAAAGTTTATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAAGAGTGGGGCAGAAAAGACCGCATGGACATCCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAGGTGGTGTTGTGAACAGCCTGAACGGTCTTTCCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCCCGAGACAGCATTGGAGTCAGAGAGCGATCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGATCGCCTTCTGTCTTTTCTCAGACCCAGTTTCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGGTAGAATATGCGTGGATGCATATGGATGAAAGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATTGTGACGTAGGGAAAAGTTGCGTCTGAAGGTACATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAGCCGAAGCAATTGCGCGTAACGTTGCGCTCATCCAGA
GTTTTTATCTTCCTAAGAGGAATATGAAT

>NC_013642|5|5|1061493-1063309|CRISPRCasFinder
GTTTTTATCTTCCTAAGAGGAATATGAAC	TATCAGTCGTCTGAAGTTCCTGTCCCGTCTTTGGAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TATTATATCCTCATATGGAATGCTCGCCCAGTTTTCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCACTAATTACTTTCGGTGTTCCGGCAGGTAGATTATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCTCTGCAGGTGAGACAAAGACCTTCACGATCAATCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAAAATATCCTCAGAATCAATGGGGCTTCTAACACCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCGAATGTTTCCCGCATCGTCTCGCCCCAGCTTCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGTAGTAGGTGAGAAGCACGTTGCTTGCAGGATCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATGGCAGGATGGGTTAGCTTTTGTCGAAACAACAAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGAAGCACGAAAGGCACTTAATATCCTGGAGCTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTAGCCTTTCTTATTCGTCTTACAGACAAACTTAACAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCTTCTCGCTCTTTCGATCCTGCGGGTGGTGGGTTCCAAGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTTACTCCTGAATATGCTTCTTTCTTTTGTCTGCTTTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGCTTGAGCTTGGGCACAACATTGAGGTTGGTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CGAGAACTCTTAGAGCTTCCTTGACTCGTTCTTTTAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCAACTCGAAAGGTTTTTCTACAGAAAGCATGAGAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	GATTTGTCTTTCCCTTTTGTTCAATCTTTTGCCCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCAGAAGATTCGCCGAGTGGTTCGGATCGCTCCCCAAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGAACGACCTCCACGTATCCTGTCGGGTACACGATC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCAGAATCACATCAATGAGATTGAACAGCAACTCGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAAATTGTGGGAGGTGTTATCATGTGGAAAGTTTATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAAGAGTGGGGCAGAAAAGACCGCATGGACATCCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAGGTGGTGTTGTGAACAGCCTGAACGGTCTTTCCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCCCGAGACAGCATTGGAGTCAGAGAGCGATCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGATCGCCTTCTGTCTTTTCTCAGACCCAGTTTCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGGTAGAATATGCGTGGATGCATATGGATGAAAGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATTGTGACGTAGGGAAAAGTTGCGTCTGAAGGTACATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAGCCGAAGCAATTGCGCGTAACGTTGCGCTCATCCAGA
GTTTTTATCTTCCTAAGAGGAATATGAAT

>NC_013642|5|5|1061493-1063309|CRT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TATCAGTCGTCTGAAGTTCCTGTCCCGTCTTTGGAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TATTATATCCTCATATGGAATGCTCGCCCAGTTTTCG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCACTAATTACTTTCGGTGTTCCGGCAGGTAGATTATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCTCTGCAGGTGAGACAAAGACCTTCACGATCAATCTG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAAAATATCCTCAGAATCAATGGGGCTTCTAACACCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCGAATGTTTCCCGCATCGTCTCGCCCCAGCTTCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGTAGTAGGTGAGAAGCACGTTGCTTGCAGGATCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATGGCAGGATGGGTTAGCTTTTGTCGAAACAACAAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGAAGCACGAAAGGCACTTAATATCCTGGAGCTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTAGCCTTTCTTATTCGTCTTACAGACAAACTTAACAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCTTCTCGCTCTTTCGATCCTGCGGGTGGTGGGTTCCAAGC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTTACTCCTGAATATGCTTCTTTCTTTTGTCTGCTTTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	AGGCTTGAGCTTGGGCACAACATTGAGGTTGGTCAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CGAGAACTCTTAGAGCTTCCTTGACTCGTTCTTTTAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	GCAACTCGAAAGGTTTTTCTACAGAAAGCATGAGAAC
GTTTTTATCTTCCTAAGAGGAATATGAAC	GATTTGTCTTTCCCTTTTGTTCAATCTTTTGCCCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCAGAAGATTCGCCGAGTGGTTCGGATCGCTCCCCAAA
GTTTTTATCTTCCTAAGAGGAATATGAAC	CAGAACGACCTCCACGTATCCTGTCGGGTACACGATC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGCAGAATCACATCAATGAGATTGAACAGCAACTCGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAAATTGTGGGAGGTGTTATCATGTGGAAAGTTTATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAAGAGTGGGGCAGAAAAGACCGCATGGACATCCAG
GTTTTTATCTTCCTAAGAGGAATATGAAC	GAGGTGGTGTTGTGAACAGCCTGAACGGTCTTTCCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TTCCCGAGACAGCATTGGAGTCAGAGAGCGATCTT
GTTTTTATCTTCCTAAGAGGAATATGAAC	TCGATCGCCTTCTGTCTTTTCTCAGACCCAGTTTCTC
GTTTTTATCTTCCTAAGAGGAATATGAAC	TGGTAGAATATGCGTGGATGCATATGGATGAAAGGA
GTTTTTATCTTCCTAAGAGGAATATGAAC	ATTGTGACGTAGGGAAAAGTTGCGTCTGAAGGTACATG
GTTTTTATCTTCCTAAGAGGAATATGAAC	AAGCCGAAGCAATTGCGCGTAACGTTGCGCTCATCCAGA
GTTTTTATCTTCCTAAGAGGAATATGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_041434794.1\|1058048_1058906_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NC_013642.1\|WP_012896304.1\|1065170_1065716_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NC_013642.1\|WP_012896295.1\|1054659_1056813_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|274209
NC_013642.1\|WP_012896300.1\|1060014_1060590_+\|hypothetical-protein	csx22	mkCas0064_csx22_CAS-III-A	unknown
NC_013642.1\|WP_038064385.1\|1066410_1066689_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_013642.1\|WP_004082362.1\|1051145_1051520_-\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224350
NC_013642.1\|WP_012896306.1\|1066997_1067819_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_013642.1\|WP_012896293.1\|1052235_1052988_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NC_013642.1\|WP_012896302.1\|1063848_1064121_+\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_012896294.1\|1052992_1054639_+\|CRISPR-associated-DxTHG-motif-protein	csx1	cd09671_csx1_CAS-III	gnl\|CDD\|187802
NC_013642.1\|WP_012896299.1\|1058902_1060042_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NC_013642.1\|WP_041434676.1\|1056827_1057259_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	COG1421_csm2gr11_CAS-III-A	gnl\|CDD\|224339
NC_013642.1\|WP_012896297.1\|1057272_1058031_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_013642.1\|WP_012896309.1\|1070112_1071306_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|376687
NC_013642.1\|WP_012896307.1\|1068107_1069265_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235056
NC_013642.1\|WP_011943618.1\|1067905_1068088_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238698
NC_013642.1\|WP_012310897.1\|1066078_1066396_-\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_012896303.1\|1064241_1065093_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_013642.1\|WP_004082361.1\|1051534_1051954_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NC_013642.1\|WP_012896308.1\|1069267_1070116_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_041434794.1\|1058048_1058906_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	1.08447e-98
NC_013642.1\|WP_012896304.1\|1065170_1065716_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	5.8585e-05
NC_013642.1\|WP_012896295.1\|1054659_1056813_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|274209	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.	0
NC_013642.1\|WP_038064385.1\|1066410_1066689_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	3.11387e-17
NC_013642.1\|WP_004082362.1\|1051145_1051520_-\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	gnl\|CDD\|224350	COG1433, COG1433, Uncharacterized conserved protein [Function unknown].	9.93429e-39
NC_013642.1\|WP_012896306.1\|1066997_1067819_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.25277e-08
NC_013642.1\|WP_012896293.1\|1052235_1052988_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.23659e-84
NC_013642.1\|WP_012896294.1\|1052992_1054639_+\|CRISPR-associated-DxTHG-motif-protein	gnl\|CDD\|187802	cd09671, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	1.08884e-73
NC_013642.1\|WP_012896299.1\|1058902_1060042_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.79334e-115
NC_013642.1\|WP_041434676.1\|1056827_1057259_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|224339	COG1421, COG1421, CRISPR system related protein [Defense mechanisms].	1.70164e-28
NC_013642.1\|WP_012896297.1\|1057272_1058031_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	7.59017e-108
NC_013642.1\|WP_012896307.1\|1068107_1069265_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	0
NC_013642.1\|WP_011943618.1\|1067905_1068088_+\|hypothetical-protein	gnl\|CDD\|238698	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.	0.000679217
NC_013642.1\|WP_012896309.1\|1070112_1071306_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|376687	pfam01960, ArgJ, ArgJ family. Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.	0
NC_013642.1\|WP_012896303.1\|1064241_1065093_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.66358e-65
NC_013642.1\|WP_004082361.1\|1051534_1051954_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	6.79279e-13
NC_013642.1\|WP_012896308.1\|1069267_1070116_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	2.57484e-160

>NC_013642.1|WP_012896300.1|1060014_1060590_+|hypothetical-protein
MVGRFPIYVEEEFISDEKKWEFVLSKIESIDPAVASFVEEAPDGTMRVIGPFRARSGYALVISSPLSSLFHFLVLNVPRVLNAVVKPGKAYVEIYEKRDLFDSPGVFTLKVKGTKGFSLKQLKEDTKLFLGVDVEPAFQPISLRNTKNGVIVTVKTLTPETTALVKLSRLCGTGESRRYGHGDVEIYRIVE
>NC_013642.1|WP_012896299.1|1058902_1060042_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MKVTLKTLTPLHIGSGEKYPPCNLVVLKEKDSKKTAVRLTTRKFLEVLRKRPEIMEKISENISKPLTLKEVENVEDGVLYEVSLYSDFSSGKRNPEIPEVVHHPDGSVYVPGSSLKGAVRLALTWHVLRNNRNLLEEFHRNVQSDLQNHKKAFYRTNEFLNGLFRFAPREINTDYFRFLRVSDSQTLKTQVVVHDVGIFYVARPNTHPRTFSLEFVPINRDFVFDVKFVKEEYDYFLTHVRKHYGVELPGSIEEIFSIVNEFYSEVFKFERERFKKAKKNFEKLDTSKIEERFQKIEKALQSEKRVLIHVGYGGGLMANSLFILLDEETRKQVRNIIKDHGKDEAPLTRRYLVQSENNSYRVISPIGWCALWLEDSQST
>NC_013642.1|WP_041434794.1|1058048_1058906_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKMSFKSGFRVGRGNETDSTLPTIHSDTIYGAVVYHAFKWSEKAEDFAKKLKVSSLLFVRDDRLLVPKPFLYNTYSLEEDDEESPKELKKASYVFLDKLADYQSMKKASGAVCKENPVEVVRIPRNSLDRITSSSNLYFVEVAFVKEGFTPAFLAEFPDEYEELFKTAVKSLGDSGIGADSTYGYGLFNAEFEAVPDFPEEGKYYLTLSLFIPSLEERTKMNEGYYRIVKRRGVKRDEMKVKKELYYVQEGSVFPFKPEGRGVLKIEDYFVQTSPLCVAFGGDGK
>NC_013642.1|WP_012896297.1|1057272_1058031_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MERPILGKYIIKGKIILETGLRIGGQELGVNIGGIDNPVIRNPLTGEPYIPGSSVKGKMRSLMERLLALPLSSNTDEEEGIRKHECENRECKVCRVFGSTSKNGNNMPSRLLVRDAFLTEDSKTKLLNMETDLPYTEWKAENTLDRVTCKANPRNFERIPAGAEFEFEIIYTAENENHIKEDLENIATALELLEDDYLGGNGSRGYGKVKFSIEKVIYKSAGYYKGEGTPVEKEVKGGVEGFKKAISEIVKG
>NC_013642.1|WP_041434676.1|1056827_1057259_+|type-III-A-CRISPR-associated-protein-Csm2
MAVSQGVSLREDLKDLVKKAEEIGRELVEVWHLNTNQLRKFHGHLTKIWSNYIYKKKDYKNNSEKFNEEILNELHFMKIFLVYQSGRKEIKGIEGLKRILEPLIDEIKTPDDFEKFKKFYDAILAYHKFHSESERNDRRAPRR
>NC_013642.1|WP_012896295.1|1054659_1056813_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MKDREELVVGALLHDIGKVVRRAGDDRRHQIAGYDFTNKVKKFAVIQDYIHYHHEKDLLEKSLENEKVWYVCFADNLSSKERMTEGQKFEELRRMDNLLSKIPEGESSRNVTYFPAKPANEVVEAVKDMKEDQKTYEDLYRRFVEDAQKISPTPDDVNFLTYKYFSFIPQETRVEGDMDISLYDHLKVTAMLALSLYDYAKENDLKFESYQEMKSHFENSNAKPFLLVGGDVSGIQNFIANVSSKGALRSYRGRSFFIEILQEVVVDEILDKTGFYRTNVHFIGGGHFHLVLSNTEKVKKALEEIRNELNEWFRNRGLSLHLVIESVEFSVKDVEDMSEVFKKIGEKLNERKYRMYTEKDLEAIFPDDLNLIQEKGNHTCKICGNRVDRLFSIREGEEEIACDFCKEMYELGKDLLIKSHVYLAERKNGKFEIFKRKFDFSREPGEGFSYKLRRIYEFSEKEKNVRRIQVVTYFEEQEFEKIAEKAPGKKIASLLVDVDNLGKIFLKGLKKKTLSRYSTLSRLMSFFFKERVESIVERKNVMVIYSGGDDLYLVGGWNDVLDVAKELREAFGRFTANDFMTFSAGYVITDEKTSMSLIREMSERAESAAKRSGKNSIAFSNRNYYAVKWNTFFEMYNFYQKLKEIADKVDRSVIRKALNLTREESPLNKAFLAYIEARENKDEDKRVANLMRENIDHLGENALNVVLQFVDLHARKS
>NC_013642.1|WP_012896294.1|1052992_1054639_+|CRISPR-associated-DxTHG-motif-protein
MGEVVKLVTFLGLGKYEESEIKINGNLLDGCVKNDDSQDIFCVRQSIFPLALIEYLNHIGKQVETIFFLTKTVKESKTWDECRRFLRSNIKDFEIPEGESSSNLMNFLVRNLVENLEKGDRVILDVTHSFRSIPLMASVVALYLKEAKDVNVSVVYGKYNKETKVTECEDLTPLTKATSWIYAVRLFKEYGYAKELADLIKKRNEEIYRRSQSSKKPKLLGSMSQKLQDLSSSIRLGSIVAIRKNLTNFFNFIDRNKARIREETEVFVPEIAALLDGIEKRYRVIHVKSENFELSEKELESEKELLDFYLQTGDLGMALRLAREYLINVYLMSGGEKSDFLDRNVRESVSISTFGYDTILQARNHVAHFGFNKLQLPSLKKIEDHLKVLVQTPPEQLLESARKTQRNRKRALLTPLGTTKGALYTVLKKISPDLLLVITSKQGKAILSEILEKAEFKGEFRVILLEDPFMGVSEIDRVVSEIKEHLSDVDEVIVNLTGGTTFLTYVIERAKNQIRYGRKVKTILAVDKRTYEEQKQNPFVVGEILELD
>NC_013642.1|WP_012896293.1|1052235_1052988_+|CRISPR-associated-endoribonuclease-Cas6
MRLKVSFQAMESTVPLNYNYFLSSFIYKRLASQNENFARFLHEKGYGKRFKFFTFSQLFFENSRVSGERIFIFPGKGWWYISSPVVEFVRYMFSSLSEDPVIRVGKTEFIVKSIDIENSLPDQSEYHFIMLSPLVVSVPEENNGKLYHRYLHPGEEEFYEVFRKNLMKKYRAFYGKDPEGTVEVIPDWDYIKSRHRITKRIKLKNAFVRAVVFPFKIRGEKKLVEIGYEAGFGEKNSMGFGMVALKKYER
>NC_013642.1|WP_004082361.1|1051534_1051954_-|ferredoxin-family-protein
MAEAKNAPLIGKDALGREVRDLSKVPWWGVDRKEIEWYPTIDYDKCVTCGICFVTCGRRVFDFDKKEGKVIVARPYNCMVACQTCMNLCPTGAISFPDASYIKKLVAQNKIVKKAFEIIKPLLAEDHLSPKETETKPEP
>NC_013642.1|WP_004082362.1|1051145_1051520_-|NifB/NifX-family-molybdenum-iron-cluster-binding-protein
MIIAIPVSENRGKDSPISEHFGRAPYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQLKDSDYEVHDHHHHEHH
>NC_013642.1|WP_012896302.1|1063848_1064121_+|hypothetical-protein
MIFVGDVSTLDMCRRDHSGEIKLKDVLTKNEGLQHLQKLRWWYLYEVPATMAGLAVPAAKRVKTELKTPSDLWVLAENRWLVFHIEGEKN
>NC_013642.1|WP_012896303.1|1064241_1065093_+|GGDEF-domain-containing-protein
MNNGHFEFLKKVFYSLQPVIGFVLLESDSENGKLSVRVSEGKVPPFFKEGFFFTSEELTHLINVCSSTSAIISVLKDSKYRRSLILYLKRPLSKDALLLIQTLLTTFEREDLSFGIKELEYMAYHDPLTGLPNRRYLFELGKRYLDLAKREGKKVFVLFMDLAGFKAINDTYGHLVGDEVLRTVSKRILDRVRRSDVVARYGGDEFTILLYDMKEEYLKFFLERILSTFREPIRVGNTTLTVASNIGVARFPEDGENLEELLKVADMRMYRAKEMRTPYLLRS
>NC_013642.1|WP_012896304.1|1065170_1065716_+|YkgJ-family-cysteine-cluster-protein
MERLIELSLQVIKLYEELDSIQKNFPSCNGCRECCNTPSVNIEVTILEFVPLAIHLLQNDSIEKWLEILENVDEMDRCVLFDPHSERGGCLYHSFRPMVCRLFSGSYVLRKEKPEVWGCKYLKPALSSFIETLPNCSEMYSKLLAIDFFLAQERYPINIALKKALEYVYYRIFPAFKHRSA
>NC_013642.1|WP_012310897.1|1066078_1066396_-|hypothetical-protein
MSWRGWLVLIFSLWLIVASLIPGIVGSKGANIADFLIVGVVLLIAGIFMLGTSKVAGWIELLLGIWLIIAAFIPGITGSKGAALANGLVVGIIALIFAFFDRKKQ
>NC_013642.1|WP_038064385.1|1066410_1066689_-|helix-turn-helix-transcriptional-regulator
MIEHLSEFFSMFSNPTRLRILLLLSKKEMCVGKIAEILRMDQSAVSAQLKVLRHLNLVKAKRHGRYMRYKLNNKHVKNVLREGFKYVLKISQ
>NC_013642.1|WP_012896306.1|1066997_1067819_+|DMT-family-transporter
MKPVFYLLLSVLVASFSGIFIKLSSLPPTTIAFYRVFIASLLFFLVKRRVGLFSLKKEMLSLIAGFFLAMHFFFWVSAFNHTTVAGAVIPLTLQPVLTGLLSWLVYGERLSRFRIVTGSTVVAGVVLALAGKEGFSGISRGDLLAVIGVVFFCGYLVLGRYLNRAMGSMNFSLKTHALASTVLAFLVPSFRVVEAREWFILIGLGVGCSFLGYLLINLSLKYFSSSVVGVVLVGEPVLSILWSFLLLGEAVTFFEIIGFIIAIIGLVLFILKT
>NC_013642.1|WP_011943618.1|1067905_1068088_+|hypothetical-protein
MPYIYRCKKCGAIYYSATSIEYQLNKYCEKCGGELEQLGEEGEVMEMEKEEEESKKKKKK
>NC_013642.1|WP_012896307.1|1068107_1069265_-|aspartate-aminotransferase-family-protein
MYLMNTYNRFPVTFVYGKGSWIYDEEGNAYLDFTSGIAVNVLGHSHPKLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEVNEAAIKIARKYGKRRSEKKYKILSAYNSFHGRTLGSLTATGQPKYQKLFEPLVPGFEYFEFNNIEDLRRKMSEDVCAVFLEPIQGESGIVPAAKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDILTTAKGLGGGVPIGAVIVNERADVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMEKLQEMKEEFDLVADVRGMGLMIGIQFKEEVNNREIATKCFENKLLVVPAGNNTVRFLPPLTVEYGEIDLAVETLKKVLREI
>NC_013642.1|WP_012896308.1|1069267_1070116_-|acetylglutamate-kinase
MRIDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKRAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKDGKLISALTPDEAEDLIRDGTVTGGMIPKIECAVSAVRSGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELEG
>NC_013642.1|WP_012896309.1|1070112_1071306_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MFTPKGFRFAGVHCKIKRKRKDLGIIFSEVPCVAAGVFTTNVVKAAPVIYDMEILKKNPNGIRAIVVNSGVANACTGEQGMINARRMAEKAAEELGIPVESVLVSSTGVIGVQLPMDKVESGIEEAARELSDDPLPFAEAIMTTDTKVKMHNTRVMIGGKEITVLGIAKGSGMIHPNMATMLSFITTDAKVSEEALEKLLKLSVDDSYNMIDVDGDTSTNDMVIVLANGLAGNTTIQLETDGFWKLYEAVHEVNQVLAEKIVEDGEGATKVIEVHVINAPDIKSARLIARSIVSSNLVKTAIYGEDANWGRVIAAAGYSGATFDPNKLDLFFENEAGRIKVAENGRGVAFDEEEAKKILSEKRIRIVLDMKQGKETAKAWGCDLTEKYVEINGRYRT

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Crispr_ID: NC_013642_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_6

1192076-1192966

Orphan

III-A

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRT

13 spacers

The CRISPR arrays of NC_013642_6

>merge|NC_013642|6|1192076-1192966|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACAAATTCTGGTGGTAAACCTAAGTCAGTGTATCTGTCGTTTCAATAATTCCTTAGAGGTATGGAAACTTGCTTCGACCATATGGCCAAATCTTGCTCGAATCTGTTTCAATAATTCCTTAGAGGTATGGAAACGATGAGATTGTTTTCGACGTCGGAGATTCGCTACATCGTTTCAATAATTCCTTAGAGGTATGGAAACTCACTGGACGATTCCTTCAGGAAAGAGGTTATATCGTTTCAATAATTCCTTAGAGGTATGGAAACCAAATTCTCTTTCCTCTTCTGTTATGTCGTCTGGTGGTTTCAATAATTCCTTAGAGGTATGGAAACCCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTTGTTTCAATAATTCCTTAGAGGTATGGAAACGCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACGGTTTCAATAATTCCTTAGAGGTATGGAAACTTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATTGTTTCAATAATTCCTTAGAGGTATGGAAACAGACCACCCCCACCAAAATTGCAAGAGAAGCGCTTGTTTCAATAATTCCTTAGAGGTATGGAAACCGGTGGGAATGCTGAGAGATTTGGGAAACGTTTTTGTGTTTCAATAATTCCTTAGAGGTATGGAAACAGTGCGTTCTGAAAACCCGTGATGGATTCATTGTCGGTTTCAATAATTCCTTAGAGGTATGGAAACTCTTGCATGTCTCTGTCATAAAAATACGAAAAAAACGTTTCAATAATTCCTTAGAGGTATGGAAACCCATTATGCCATATTACTGCTGTGCTGTTTTATCGTGTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_013642|6|6|1192076-1192966|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATTCTGGTGGTAAACCTAAGTCAGTGTATCTGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTGCTTCGACCATATGGCCAAATCTTGCTCGAATCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GATGAGATTGTTTTCGACGTCGGAGATTCGCTACATC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCACTGGACGATTCCTTCAGGAAAGAGGTTATATC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAAATTCTCTTTCCTCTTCTGTTATGTCGTCTGGTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGGTGGGAATGCTGAGAGATTTGGGAAACGTTTTTGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTGCGTTCTGAAAACCCGTGATGGATTCATTGTCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTTGCATGTCTCTGTCATAAAAATACGAAAAAAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCATTATGCCATATTACTGCTGTGCTGTTTTATCGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_013642|6|6|1192076-1192966|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATTCTGGTGGTAAACCTAAGTCAGTGTATCTGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTGCTTCGACCATATGGCCAAATCTTGCTCGAATCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GATGAGATTGTTTTCGACGTCGGAGATTCGCTACATC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCACTGGACGATTCCTTCAGGAAAGAGGTTATATC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAAATTCTCTTTCCTCTTCTGTTATGTCGTCTGGTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGGTGGGAATGCTGAGAGATTTGGGAAACGTTTTTGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTGCGTTCTGAAAACCCGTGATGGATTCATTGTCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTTGCATGTCTCTGTCATAAAAATACGAAAAAAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCATTATGCCATATTACTGCTGTGCTGTTTTATCGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_013642|6|6|1192076-1192966|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATTCTGGTGGTAAACCTAAGTCAGTGTATCTGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTGCTTCGACCATATGGCCAAATCTTGCTCGAATCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GATGAGATTGTTTTCGACGTCGGAGATTCGCTACATC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCACTGGACGATTCCTTCAGGAAAGAGGTTATATC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAAATTCTCTTTCCTCTTCTGTTATGTCGTCTGGTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCTGGTAAGAGTTCTCTATACAGTTGTAATGCATCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTACAGCAACGAGGTCGCACGCTAGGGCTTTGACG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTTTTTCGGGGGCTTTCCCGCTACTCTGGGCTTTCATT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGACCACCCCCACCAAAATTGCAAGAGAAGCGCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGGTGGGAATGCTGAGAGATTTGGGAAACGTTTTTGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGTGCGTTCTGAAAACCCGTGATGGATTCATTGTCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTTGCATGTCTCTGTCATAAAAATACGAAAAAAAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCATTATGCCATATTACTGCTGTGCTGTTTTATCGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_012896364.1\|1185723_1186992_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200452
NC_013642.1\|WP_011943683.1\|1198679_1201238_-\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NC_013642.1\|WP_011943677.1\|1193089_1194673_-\|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237369
NC_013642.1\|WP_011943682.1\|1198063_1198687_-\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_011943678.1\|1194708_1195218_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NC_013642.1\|WP_012896363.1\|1183670_1185722_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NC_013642.1\|WP_012310999.1\|1188970_1189792_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|272894
NC_013642.1\|WP_011943679.1\|1195205_1196612_-\|NADPH-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|183780
NC_013642.1\|WP_011943685.1\|1202377_1202764_-\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_011943684.1\|1201227_1202376_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NC_013642.1\|WP_012311001.1\|1190705_1191431_-\|aspartate-dehydrogenase	unknown	unknown	gnl\|CDD\|237342
NC_013642.1\|WP_012896365.1\|1187288_1187885_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NC_013642.1\|WP_011943681.1\|1197425_1198046_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_013642.1\|WP_012896366.1\|1187868_1188525_+\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_011943680.1\|1196608_1197442_-\|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	unknown	unknown	gnl\|CDD\|235747
NC_013642.1\|WP_012311000.1\|1189796_1190693_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_013642.1\|WP_012896367.1\|1188521_1188980_+\|YaaR-family-protein	unknown	unknown	gnl\|CDD\|224642
NC_013642.1\|WP_012896369.1\|1202760_1205124_-\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NC_013642.1\|WP_012310993.1\|1182009_1183671_+\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NC_013642.1\|WP_004082152.1\|1187006_1187288_+\|DUF503-domain-containing-protein	unknown	unknown	gnl\|CDD\|224467

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_012896364.1\|1185723_1186992_+\|alpha-amylase	gnl\|CDD\|200452	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	5.74307e-158
NC_013642.1\|WP_011943683.1\|1198679_1201238_-\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	5.3043e-83
NC_013642.1\|WP_011943677.1\|1193089_1194673_-\|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|237369	PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional.	0
NC_013642.1\|WP_012896363.1\|1183670_1185722_+\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NC_013642.1\|WP_012310999.1\|1188970_1189792_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|272894	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.66809e-123
NC_013642.1\|WP_011943679.1\|1195205_1196612_-\|NADPH-dependent-glutamate-synthase	gnl\|CDD\|183780	PRK12831, PRK12831, putative oxidoreductase; Provisional.	0
NC_013642.1\|WP_011943684.1\|1201227_1202376_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	6.36313e-64
NC_013642.1\|WP_012311001.1\|1190705_1191431_-\|aspartate-dehydrogenase	gnl\|CDD\|237342	PRK13303, PRK13303, aspartate dehydrogenase.	9.50046e-115
NC_013642.1\|WP_012896365.1\|1187288_1187885_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	5.79922e-73
NC_013642.1\|WP_011943681.1\|1197425_1198046_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.92331e-70
NC_013642.1\|WP_011943678.1\|1194708_1195218_-\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	1.4204e-38
NC_013642.1\|WP_011943680.1\|1196608_1197442_-\|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	gnl\|CDD\|235747	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein.	2.14622e-169
NC_013642.1\|WP_012311000.1\|1189796_1190693_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	2.81898e-159
NC_013642.1\|WP_012896367.1\|1188521_1188980_+\|YaaR-family-protein	gnl\|CDD\|224642	COG1728, COG1728, Uncharacterized protein conserved in bacteria [Function unknown].	3.16418e-53
NC_013642.1\|WP_012896369.1\|1202760_1205124_-\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NC_013642.1\|WP_012310993.1\|1182009_1183671_+\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	2.89361e-21
NC_013642.1\|WP_004082152.1\|1187006_1187288_+\|DUF503-domain-containing-protein	gnl\|CDD\|224467	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown].	8.45038e-39

>NC_013642.1|WP_012311001.1|1190705_1191431_-|aspartate-dehydrogenase
MTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLGEFQVPSDVSTVVECASPEAVKEYSLQILKSPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVETVRIETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNINVASTIGLIVGFEKVKVTIVADPAMDHNIHIVRISSAIGNYEFKIENIPSPENPKTSMLTVYSILRALRNLESKIVFG
>NC_013642.1|WP_012311000.1|1189796_1190693_-|quinolinate-synthase-NadA
MVDEILKLKKEKGYIILAHNYQIPELQDIADFVGDSLQLARKAMELSEKKILFLGVDFMAELVKILNPDKKVIVPDRSATCPMANHLTPEIIREYREKFPDVPVVLYVNSTSECKALADVICTSANAVEVVKKLDSSVVIFGPDRNLGEYVAEKTGKKVITIPENGHCPVHQFNAESIDAVRKKYPDAKVIVHPESPKPVRDKADYVGSTGQMEKIPEKDPSRIFVIGTEIGMIHKLKKKFPDREFVPLEMAVCVNMKKNTLENTLHALQTESFEVILPKEVIEKAKKPILRMFELMG
>NC_013642.1|WP_012310999.1|1188970_1189792_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MEKILDLLMSFVKEDEGKLDLASFPLRNTTTSAHLLLKAENVVASGIEVSRMFLEKMGLLSKFRVEDGEYLEKAGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKTLPGLGVLQKIAVVHGGGDPHRLDLSGCVMIKDNHLKMYGSVERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEVFVDLSLEIQR
>NC_013642.1|WP_012896367.1|1188521_1188980_+|YaaR-family-protein
MRIDPLGGESLKNQEVKGKKSGKASRIGESKKKEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRARLHLVVEEVNEKLMDLTEKIMKNERPTINLAARIEEINGLILNLYR
>NC_013642.1|WP_012896366.1|1187868_1188525_+|hypothetical-protein
MKRSSKIVLVVVLIAVALTAVLFLYYRSFLTSSDYRAAEVHYLFRVGDNSYFVRIDDSKRMVFVVSFPKESFNPERREAIISERPLSDLEKMENLLEVKAERAFYSVMSEEEFLKLCQNLLGKQCESFPDFVKEFSKRKLKFFDFLFVGSWLKKFGFNNLNRFSLYKFFEKISNYAVDVFEAPTVTEKPILIEVQGKKYERLYLDSEKLKAISEEMKR
>NC_013642.1|WP_012896365.1|1187288_1187885_+|HD-domain-containing-protein
MVVITNELESIMERLLSRKRINHVRSVVEFSRKLGEMYGADLNKLELVAISHDLFRDVPPRKLLKMAQAYGLKISELERTHPVLLHGKVAAEFLKRRFNVEDEEVLNAVAYHTSGHVSFKTVGKILFIADSLEFTRDFPGVDELRRIAFRNLEEGFFQVLKNKIFYAVGKNYLLIPETVELWNSILMRRGGLVDEEVE
>NC_013642.1|WP_004082152.1|1187006_1187288_+|DUF503-domain-containing-protein
MSVGVVSLRVRLFGVRSLKEKRGILKRLMNDLRKKYNISISEVGAHDSKSFFEIGIAMVNTDRAVIERVFDSIIDYLDLYPGMEVEEIEREVW
>NC_013642.1|WP_012896364.1|1185723_1186992_+|alpha-amylase
MNFKRLIIYEAFARAYPGEKGKKFDSLIKDLERLKGMGINTVWLMPIHPTGIEGRKGTLGSPYAIRDYYEIDPFIGTKDDFKRFVKRAHELNMYVLMDMVLNHAAADNVLVRKHPEWFLRDENGNPTRKVPDWTDIVDFDYSNGELRKYMINMMKYWVEEFDVDGFRCDVAGLIPLDFWLQARKELDPVKRLIWLSETHDPYMYQAFDITYDYDGYYRFRDFIEGRGSLREYVDFLRMQDHMYPRGYIKMRFLENHDQPRIAKFIEEDSLIHWIAFLFTFKGVPLVHNGQEYGLKEDVDIFNEYTLPFPMEENRVSILHRKLAHYRYGTGVFTEGEMLFVKNDQPEKVISYLWRYENRYILCVLNPLLENTKVTLDFSGIWESACIHSKNVFNDEIVRVPVKNSRAIVEIGKEPLILSFVLY
>NC_013642.1|WP_012896363.1|1183670_1185722_+|elongation-factor-G
MGGLQNVRSATLIGHNGSGKSLLLAQILYKSGLIDKADTKYVDYDPVEEEKGASFSSHVASLEWKGKKVYLIDTPGFSDFISEVINGIFVSENIISVVNAVAGVEIQTERTWNMADEMKKPIIVFVNQMDKERANFENVVAELKERFSRKIVPVVVPIGAAENFEGVVDLLKKKVYRYDGDKVQEEDMPENFNDMRSEILEDIVEQDEELMMRYLDGEEIGYDELMRVLRESYKKGEIVPVLSGSALKGIGLDLLLDYLGDIGVSPEEAPSYKALLEDGTEIEVKFSEEEPFCAYIFKSVVDQFVGRITFAKVIAGVLRSGDTIVNVQKDVSEKLGHIYVPILKQQKEVESAGPGEIVVLLKLKEGAVGETLAHRDRRVKIVPPAFPEPMFSRSVHPKSKSDIDKISNGLSRLSDSDPTFVWEYDSETGETVVSGLGAMHLDVMIERLKKIFGVDVEVGKPKIAYRETITTTAVAEHKHKKQTGGHGQYGHVKIQLEPLPRGQGYEFVDKIVGGVIPRNFIPSVDKGIREAMKKGVLAGYPVTDVRVILFDGSYHEVDSSDISFQIAAIQAFKKGMEAAKPVILEPIMEVEVFVPEENAGDVMGEISSRRGRPLGMEPSGKGMVKVKAEVPLAEMLDFSSKLSSITSGRGYFTMRFQRYEIVPPNIQEKIIEERRREMQEQEK
>NC_013642.1|WP_012310993.1|1182009_1183671_+|phosphodiester-glycosidase-family-protein
MKQIILVLLIFASVVFGSYLISGGKAFPLRTVFSEGIYYVCAEDLAPAGVGYIHSNGYHYIVYDNHVLFIKEHETIFDFVEKLSPPIFADGLLFVPIDALKKVMEGYQVYTKGEKVLIYDSLPIVLSAAKEKNGVTITYTGTIVPDMVSVEKSMGKVRINLSPVVVSLPNVSEDIKVELEKNGLSFVVDVGNFYPDVEYSIGDGKLLFRFLLVEGFFGRQEVADGVVFERKIEEFDEGEKTVVNYLIMDPEKVTIKPVVVENGFGTIERLDEMVKRVGGIAGINGNYFDPITKFPIGLVVIDGKPYSAMFSGRPVFAITEDNEVFIGRVIVDVTLMVKDVLFLVKGINTLGEGEVLVYTKEFSKEIPKKDDKIYFVVKDNKVSQIGYKSHAENSEYVVSISKKYEEYLSDLKEGDEVYISLQPNIPLRIKQAVEGGPLLIQNGAPIPDALEEKARYGGGIAYAKAPRTVIATKDGKLWFLVFEGYNHITRGLTYDELVDFLVSRGFEDAMCVDGGSSSVMAVAGSLFGRTENSTAAIPVGIVVWEKKKTEVGE
>NC_013642.1|WP_011943677.1|1193089_1194673_-|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit
MKRDFLGRTLAVIEDLSVEEQMFLYEKTRELKQRWYNGEDVSDFRIKKRNVGIYIVFVEPSTRTKESFINAAKFHSGPNVKVNVFDSEHSSFNKQESYTDTFSMLTGYSDYSIFVVRTRLEGVCRLLERRISEFASRNGIEVPSFINAGDGKHEHPTQELLDEYTFLEQNGFDNSFIHVALVGDLLHGRTVHSKVNGLKIFKNVKVDLVAPEELMMPEHYVEKMKKNGFEVRIFSSIREYLSQKDVAKIWYFTRLQLERMGEDILEKVHILREAVTFKKEYLDALPEGVKFYHPLPRHKVYPTIPNFLDTLPLNGWETQARNGYWVRIVLLSMFGGALEAPFDTSKKEEKPEEDFIIPAPITHGSKGVQKEGKRGIKPIENGTVIDHIAKGKTPEEIYSTIVKIRKILRLYDVDSADGIFRSSDGNFKGYISLPDRYLSKREIKKLSAISPNTTVNIIKNSTVVEKYRIKLPPTIYGFEELRCKNENCITNPAHGENASPSFVRDEKGQFICEYCETPHSFEEIWSI
>NC_013642.1|WP_011943678.1|1194708_1195218_-|dihydrofolate-reductase
MAKVIFVLAMDVSGKIASSVEGWNSFEDRKNFREITTEIGNVVMGRVTFEEIGRPLPERLNVVLTRRRRSSNDPSLVFFNGSPGDVVKFLEGKGYEKVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGTLFLKYSVEKSHR
>NC_013642.1|WP_011943679.1|1195205_1196612_-|NADPH-dependent-glutamate-synthase
MKNRKTPMKEQSPESRRRNFEEVALGYTLEEAVAEAQRCLQCPTHPCVSGCPVGIDIPGFIRKLREGKLEESYRILKSYNNLPAVCGRVCPQEVQCESRCVVGKMKDSEPVAIGRLERFVADWAAENLEEEVKPLAGSKKEKVAVVGSGPAGLTAAADLAKMGYHVDVFEAFHKPGGVLVYGIPEFRLPKGIVEREVNYIRKLGVNFYLNTVVGKTVKVKELLSEYDAVFIGTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPEYDTPIRVGKKVAVIGAGNTAMDAARSALRLGAEKVYIVYRRTEREMPARREEYHHALEEGIEFLWLTLPIRYIGDANGNVEAVECVRMELKEADGSGRPRPVPIEGSNFILEVDMVIEAIGQGPNRVLLSEFPGLKLNEHGYIKADEDTGATSVKGVFAGGDIVTGAATVIKAMGAGKKAAQFIHSYLTGEWNPWQK
>NC_013642.1|WP_011943680.1|1196608_1197442_-|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein
MNEIVKKTKIAEDVFDFWVHSPSVSKEAGPGQFVVIRLHEKGERIPLTVADTRPEKGLFRMVVKVVGKTTHELSLKKEGDTILDVVGPLGNPSEIKNYGNVLLVGGGVGIATLYPIAKALKNVGNNITTVLGARTKDYLIMVDEFKKISDVLLVTDDGSAGMKGVVTDAMDKLFRERKFDICWAVGPTIMMKFCTLKAREFGVPIWVSLNPIMVDGTGMCGACRVTVSGQIKFACVDGPEFRGEEVDWDELLKRLAQYREQEKISYERFLRAAGESE
>NC_013642.1|WP_011943681.1|1197425_1198046_-|ABC-transporter-ATP-binding-protein
MKKSYGKKKVLDGVSFSLEKGKSLGIVGQNSAGKTTLLKILATILKPDEGRLFLFEKDALKDLSYIRKRIAFVPEFPALLEELTVRENLLFFSRLRGVKMESFIVSEFMLEPFMGTLVRNASKGVKQRTALAAALFGNPELLILDEPTSGLDVESASIVRSKLKRLKEEGITVIISSHIREDIEELCDEILVINGESGGSNLERDR
>NC_013642.1|WP_011943682.1|1198063_1198687_-|hypothetical-protein
MSDEKRRKKEELIERIVSEKGEEAFPKLLELLEDEDPEVKEIVSEVFYRLGDRAREFLFNEIQKRRERGFEKNDITNLYIIDILGDLGEKRMKNVLYELMEKYDSEEALLIIYEALAKIGEGEVFLPELEYLMFEDAYRKELCEQVAMVLANIPTERSLRILLKALKNKEFSEGQKEFFRRAVEMILYRKPELSKYVTDEERKELGL
>NC_013642.1|WP_011943683.1|1198679_1201238_-|SMC-family-ATPase
MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNKNATDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPASVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLTSPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSLQALYAASWKYLEENDLEVLKSELKTVSEKKKELLKKREELQKEEEQLKRLLEKYRELVKKKERLKALSLRKNELQKEVVHEQKVKKAKELEPLFRELYLRQREFERLSQDLNSREERYKELEKKKEAISKEIPVHRERLSKLEEMAEKINEELDLLEKVLKASRPLLEQRIRLKENLIRLEEEIRRLVGEKEKRKKELFSIEKTENETKDELEKLLEELSVLKKDHMKWLAYQIASSLNEGDTCPVCGGVFHGKVEAVEFNVDELEKLDQKRSELENTLNVLKERKKSLSSLIEDLLMKTEEGKKNLKSIRNQIEKIEEELHRLGYSEDLEEKLDEKRKKLRKIEEERHSISQKITAADVQISQIENQLKEIKGEIEAKRETLKEQREEMDQLKRDFFDRLGEIGIGFEEFRILVKEEVKDAEKELGIVETEIRLLEGSLKELESENVRDVSEDYERVRNQLEALSQEISDLERKEGRLNHLIEETLRRERELKSLEKKLKELSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRIMGGVVVNE
>NC_013642.1|WP_011943684.1|1201227_1202376_-|exonuclease-SbcCD-subunit-D
MKELRILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKRGVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFITSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLSGYAGIEQGREIIINRALIPSVVDYAALGHIHSFREIQKQPLTIYPGSLIKIDFGEEADEKGAVFVELKRGEPPRYERIDVAPLPLKTLYYKKIDTSALRSIRDFCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIERKSKREIEEVLRESMEEFKEELDKIDYFELFKEYLKKREENHEKLLKILDELLDEVKKSEA
>NC_013642.1|WP_011943685.1|1202377_1202764_-|hypothetical-protein
MKRDIFYVIILTVFAVLFMLTYFSYRNLAVKLTRMEKTLKAYELYIFSDYESFENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKAFNLSDNEEIKKIASFYLEECRKKLAGD
>NC_013642.1|WP_012896369.1|1202760_1205124_-|endopeptidase-La
MPKKSKDTEKSFKILEKYASQQEKELEIPDSLPCIPLRNGMGVFPNTVVPFYVGRTGSLIALEEAMEKYNRLLLVVNQKDPSVETPEPEDLYKVGTVVKVLQIMKLPDDTFKVLVEGLERAQIEEFVSTDPFFLTKIKILKVKYRKTKKLEALMRSVKDKAVRYFNLTHRFPQETLVTLKEMQDPDKLADFVASILPVPLETKQELLETIHPLERLEKILSILVKEIEILEIEEEIEKKVKDRIEKTQREYVLREKLRAIKEELGAEEELEIKELYEKVEKGDYPDYVKEKAYKEIQRLEKMSPYSAEATVVRTYLDWLLNLPWSAASEDRLDIKEAGKILDKNHYGLEEVKERILEYLVARKFSKNLKAPILCLVGPPGVGKTSLGRTIAEAMGRKFGRMSLGGLRDEAEIKGHRRTYVGALPGRIIQIIRRLGTKNPVILLDEVDKMGISFQGDPASALLEVLDPEQNKDFVDHYLEVPFDLSQVLFITTANVLHTIPPALRDRMEIIEIPGYSDPEKYHIARDYIIPKIAQAYGLSKVMFTPGAIKKIIREYTKEAGVRNLERVIEKVIRKSLVKGEKKSFKITTKDIEELLGPPVFKEEEILEEDTVGAVTGLAWTPVGGSVLIVESLLVPGKGNLILTGNMGDVMKESARIALSVVRKMCGEECREVFEKNDIHIHVPEGAVPKDGPSAGITITVALYSAVTGKKVRRDVAMTGEITLRGKILPVGGIREKLLAAKRAGIKKVILPSRNRPDVEKIPKEYLNGMEIVYCSEIQEVLKEAIVR

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Crispr_ID: NC_013642_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_7

1304326-1304755

Orphan

III-A

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAATTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CRT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR

6 spacers

The CRISPR arrays of NC_013642_7

>merge|NC_013642|7|1304326-1304755|CRISPRCasFinder,CRT,PILER-CR
GTTCTTGTACCTCTGAAGACGCATTGAAACTGGCTCAATATCGTGGACCACGACTACAGGGAGGAGCGTTTCCATACCTCTAAGGAATTATTGAAACTGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGAGTTTCCATACCTCTAAGGAAGTATTGAAACGACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTCGTTTCCATACCTCTAAGGAAGTATTGAAACAGACGTACATTTTCGATACAGCAGAAGGAAAAACAAGTTTCCATACCTCTAAGGAAGTATTGAAACTAGCTCATCAGGAGACATCTTCTTCAGGTCTTCGAATGGTTTCCATACCTCTAAGGAAGTATTGAAACACAGAGGGCATGTTCGAACTTCAACTCGCAACAGAACGTTTCCATACCTCTAAGGAAGTATTGAAAC

>NC_013642|7|7|1304326-1304755|CRISPRCasFinder
GTTCTTGTACCTCTGAAGACGCATTGAAAC	TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGACGTACATTTTCGATACAGCAGAAGGAAAAACAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TAGCTCATCAGGAGACATCTTCTTCAGGTCTTCGAATG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACAGAGGGCATGTTCGAACTTCAACTCGCAACAGAAC
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NC_013642|7|7|1304326-1304755|CRT
GTTCTTGTACCTCTGAAGACGCATTGAAAC	TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGACGTACATTTTCGATACAGCAGAAGGAAAAACAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TAGCTCATCAGGAGACATCTTCTTCAGGTCTTCGAATG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACAGAGGGCATGTTCGAACTTCAACTCGCAACAGAAC
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NC_013642|7|7|1304393-1304755|PILER-CR
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC
GTTTCCATACCTCTAAGGAAGTATTGAAAC	AGACGTACATTTTCGATACAGCAGAAGGAAAAACAA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TAGCTCATCAGGAGACATCTTCTTCAGGTCTTCGAATG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACAGAGGGCATGTTCGAACTTCAACTCGCAACAGAAC
GTTTCCATACCTCTAAGGAAGTATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_155810344.1\|1308883_1309594_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|132571
NC_013642.1\|WP_012896430.1\|1313480_1313873_+\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_004081900.1\|1300126_1300747_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NC_013642.1\|WP_012311108.1\|1308240_1308891_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NC_013642.1\|WP_011943770.1\|1310824_1311985_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|273415
NC_013642.1\|WP_012896428.1\|1311985_1313059_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NC_013642.1\|WP_012896424.1\|1305682_1306660_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NC_013642.1\|WP_081440600.1\|1303413_1304190_-\|endoglucanase	unknown	unknown	gnl\|CDD\|366751
NC_013642.1\|WP_012896425.1\|1307359_1308244_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NC_013642.1\|WP_012896422.1\|1302592_1303417_-\|endoglucanase	unknown	unknown	gnl\|CDD\|366751
NC_013642.1\|WP_011943765.1\|1306664_1307375_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|223331
NC_013642.1\|WP_012896427.1\|1309609_1310815_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NC_013642.1\|WP_004081904.1\|1298158_1299175_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NC_013642.1\|WP_011943759.1\|1299167_1300025_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NC_013642.1\|WP_012311004.1\|1302033_1302471_-\|ferritin	unknown	unknown	gnl\|CDD\|224548
NC_013642.1\|WP_012896429.1\|1313073_1313484_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_013642.1\|WP_004081907.1\|1296845_1298162_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NC_013642.1\|WP_011943758.1\|1296560_1296839_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NC_013642.1\|WP_011943761.1\|1301649_1302072_+\|RrF2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273242
NC_013642.1\|WP_011943760.1\|1300752_1301622_-\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|224491

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_155810344.1\|1308883_1309594_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	gnl\|CDD\|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	8.16233e-120
NC_013642.1\|WP_004081900.1\|1300126_1300747_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.10698e-10
NC_013642.1\|WP_012311108.1\|1308240_1308891_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	9.48176e-91
NC_013642.1\|WP_011943770.1\|1310824_1311985_+\|diaminopimelate-decarboxylase	gnl\|CDD\|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NC_013642.1\|WP_012896428.1\|1311985_1313059_+\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	9.44604e-136
NC_013642.1\|WP_012896424.1\|1305682_1306660_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	6.60309e-152
NC_013642.1\|WP_081440600.1\|1303413_1304190_-\|endoglucanase	gnl\|CDD\|366751	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.	1.61029e-74
NC_013642.1\|WP_012896425.1\|1307359_1308244_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	6.91611e-165
NC_013642.1\|WP_012896422.1\|1302592_1303417_-\|endoglucanase	gnl\|CDD\|366751	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.	1.68492e-27
NC_013642.1\|WP_011943765.1\|1306664_1307375_+\|diaminopimelate-epimerase	gnl\|CDD\|223331	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism].	1.96771e-70
NC_013642.1\|WP_012896427.1\|1309609_1310815_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NC_013642.1\|WP_004081904.1\|1298158_1299175_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.69217e-138
NC_013642.1\|WP_011943759.1\|1299167_1300025_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	3.33949e-96
NC_013642.1\|WP_012311004.1\|1302033_1302471_-\|ferritin	gnl\|CDD\|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	1.16348e-26
NC_013642.1\|WP_012896429.1\|1313073_1313484_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.53218e-34
NC_013642.1\|WP_004081907.1\|1296845_1298162_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	4.11584e-92
NC_013642.1\|WP_011943758.1\|1296560_1296839_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.09247e-41
NC_013642.1\|WP_011943761.1\|1301649_1302072_+\|RrF2-family-transcriptional-regulator	gnl\|CDD\|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	1.27805e-48
NC_013642.1\|WP_011943760.1\|1300752_1301622_-\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|224491	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism].	1.30243e-94

>NC_013642.1|WP_081440600.1|1303413_1304190_-|endoglucanase
MVVLMTKPGTSDFVWNGIPLSMELNLWNIKEYSGSVAMKFDGEKITFDADIQNLSPKEPERYVLGYPEFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPSLPLNFAMETWLTREKYQTEASIGDVEIMVWFYFNNLTPGGEKIEEFTIPFVLNGESVEGTWELWLAEWGWDYLAFRLKDPVKKGRVKFDVRHFLDAAGKAFSSSARVKDFEDLYFTVWEIGTEFGSPETKSAQFGWKFENFSIDLEVRE
>NC_013642.1|WP_012896422.1|1302592_1303417_-|endoglucanase
MRWAVLLMVVFSALLFSSEVVLTSVGATDISFNGFPVTMELNFWNVKSYEGETWLKFDGEKVEFYADLYNIVLQNPDSWVHGYPEIYYGYKPWAGHNSGVEFLPVKVKDLPDFYVTLDYSIWYENNLPINLAMETWITRSPDQTSVSSGDAEIMVWFYNNVLMPGGQKVDEFTTTVEINGVKQETKWDVYFAPWGWDYLAFRLTTPMKEGKVKINVKDFVQKAAEVVKKHSTRIDNFEELYFCVWEIGTEFGDPNTTTAKFGWTFRDFSVEVVK
>NC_013642.1|WP_012311004.1|1302033_1302471_-|ferritin
MKVSDILTVAIRLEEEGERFYRELSEYFDGEIKKTFLELADQERAHAEIFRKISDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGFVNSDAQKTVKKIIDQEKEHLRKLLEMKREST
>NC_013642.1|WP_011943761.1|1301649_1302072_+|RrF2-family-transcriptional-regulator
MFGKCQKHVRYALRLLVRLSLENRPMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGFVLAKSPDEISFLDVISVFEKDLVIVDCNSRCKNYRACRVKYFWNWLSDYLKDLFSNITIKDIASGTFTFHLEKLS
>NC_013642.1|WP_011943760.1|1300752_1301622_-|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MKYFVAVRPFSFVASAFPVTVGAMLAEEFSLTRYILSLIASIFLHAGVNTTNDYFDYKKGVDTKDSLGSSGLLVSGKITPREELLLSVFCYAVSVVLGLVLIKISGPALLWLGLTGLVLGYAYTGHPFYLKYKSLGMFLVFILMGPLMVLGAYYVQTGRFSLEALLVSIPVGIATDLILLANEIRDSEFDRRSGIKTLPILIGDRAASFLYAVLTGLIYVFIVILVSTGVFRVISLVSLVSLPLYIRVIKQLFQKSAGRKNAREIADVDKMSALAEMILFVSMILGLLR
>NC_013642.1|WP_004081900.1|1300126_1300747_-|CPBP-family-intramembrane-metalloprotease
MVKRISEISFLSVLIGLFLGWYFVFQVNMLDFWWRMFMTTLIFSVISIFLGGKRNIKPNKYEAPLAIYSAVAAYLLFVVGYLISLLIPPFHRDVVSVYGLAEGQNALKVIILLVFIAFFEEIIWRGFVTEFLLQRLDVVPSILISSLLYSVVHVFTGNMALIVGAFVLGIILSLLYVITGKVSTPAFAHALWSLLIFVVLPLKGGF
>NC_013642.1|WP_011943759.1|1299167_1300025_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNVVVCIKQVPDTTNVRIDRKTNNLVREGVPSIINPDDERALELASQLKEKFGATVYVITMGPPQAKEALKDAIAFGLDEAVHLSDRTFAGADTLATTYTLYWGIKKIEERIGKIDLILTGKQAVDGDTGQVGPGLATRFGYALGAYVVRIEEIDPEKKEMVIVRRLDQGFEKIRLKLPAVLTITDELNKPRYANLPNLIRAIRYEPIVWTHKDLGLDPKKCGFFGSPTRVVSTNIPPARKGGDIISKNEDPEVAAEKLIEALKKFEAVRLVEALKPVLEGEKDE
>NC_013642.1|WP_004081904.1|1298158_1299175_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSEKKIIFVLIEHHGGKAHPVSWELIGKARDLASKLENSEVWGVLLGEGLESVAKEAIQRGADKVLYVKNREFNTYVNYLYKKALVDMVRKYRPEIFLIGATLEGRELAGMVATELETGLTADCTGLDIIPDKKLLAMTRPTFGGNLMATIMCPDHRPQMATVRPGVMKELPPDPERTGEIIEEEYDLGTFDKLIEILETIPLQTQVNLEYAPVVVAGGKGVGGPEGFKKLKELADLLGGEVGASRAAVKAGWISPEHQVGQTGKTVRPVLYFACGISGAIQHVVGIKESEIIVAINIDEKAPIFDIADIGIVGDLHKVVPALTAKLRELLNKSGVKK
>NC_013642.1|WP_004081907.1|1296845_1298162_-|NAD(P)/FAD-dependent-oxidoreductase
MKIEFDVVVVGAGPSGLSCAYVLAKNGLKVAVVEKGEYPGSKNVMGGVLYVHPLKEIMPDFLEKAANSKALERNVIEQNLWLLGNEGVIKIGHRNVEWKENPNAFTVLRANFDRWFAQEVEKAGALIIPKTKVEDFLRNEKGEIAGVVTSRPKGEIHSKAVVIAEGVNPILTMKAGLRKEDLKPHMVAVAVKEVISVPEDVVNRVFGVEGNDGATIELLGSWSEGMFGMGFLYANRSSVSLGCGVLLEDLRKKKIKPYQLLENLKNHPVISDMLGEYRNNTMEYLAHLIPEGGYYAMPKVYGDRVLVCGDAAMLVNSIHREGSNHAITSGRLAAETLLEAFEKGDFSEKILKNYYLRLKESFILKDLEKYKDLMPTMEKNHQFVEIYPDLANDALKRFLQVDGTPKWDVQKQIADMVLSRRSLIGISLDLLRFWRAVR
>NC_013642.1|WP_011943758.1|1296560_1296839_-|ferredoxin-family-protein
MRIEDKLYLNRYRTDEENPHLKIKDESICAEKCPDRPCVSCCPADVYEWTESGMEVKFEGCLECGTCRIVCPFGNIEWKYPRGNYGVLYKFG
>NC_013642.1|WP_012896424.1|1305682_1306660_+|aspartate-semialdehyde-dehydrogenase
MKVGVVGATGEVGRTMVKVLEEFNVPVTELRLFASERSVGKEIEFKGEKFKVELLTEESMKWKCDYFLFSAGASVSRKFAPIAAENGVTVIDNSSAFRMEKEIPLVVPEVNAYLLKGYTGIIANPNCSTIQMILSIYKLHEVYGIEEIFVSTYQSVSGAGHKGIEELLAQERGENVMKVFPKPIHRNVIPLIGDIQENLFSQEEMKMVNETRKILNDYSIRVYPTTVRVPVLYGHSEAIMVRFKKPYESLEKVREVIASGEDVVVTDDLITPVDVAGKNETYVCRLRAADERSILFWNVADNIRVGAATNAVRILLKHAEMNGKV
>NC_013642.1|WP_011943765.1|1306664_1307375_+|diaminopimelate-epimerase
MCYSANGNTFLIVDNTQKRIPEEKKPDFVRENVGDLDGVIFVELVDGKYFMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDSIWVRMPGVSEKKEMKVDDYEGYFVVVGVPHFVMEVKGIDELDVEKLGRDLRYKTGANVDFYEVLPDRLKVRTYERGVERETKACGTGVTSVFAVYRDKTGAKEVKIQVPGGTLFLKEENGEIFLRGDVKRCSEE
>NC_013642.1|WP_012896425.1|1307359_1308244_+|4-hydroxy-tetrahydrodipicolinate-synthase
MFRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLMKALFAETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESGLL
>NC_013642.1|WP_012311108.1|1308240_1308891_+|4-hydroxy-tetrahydrodipicolinate-reductase
MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEELGSPDVVVDFSSPEALPKTVELCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESALGKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVIFGGE
>NC_013642.1|WP_155810344.1|1308883_1309594_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase
MSELDAREIIEMIAKAKKKTPIVAYIKGDLAGIDFSSFKFFGDERFGILFGEYEDFKKLLEEHREKIEDYHLEVKARNSALPLADLTKYKARIEPGAIIRDMVEIGEGAVIMMGAVINVGAVIGEGTMIDMNAVVGGRAIIGKKCHIGAGAVIAGVIEPPSAKPVVIEDEVLVGANAVILEGVTVGKGAVVAAGAVVTKDVPPYTVVAGVPARVIKQIDERTKEKTKIVDELRNLE
>NC_013642.1|WP_012896427.1|1309609_1310815_+|aspartate-kinase
MNVVVQKYGGSSVATPERIKNVAQRIKKKVDEGYKVVVVVSAMGKTTDNLIKLAKEISPRPDSRELDMLLATGEQVSAALLSMALKDFGVKAKSLNAFQVKIKTTSHHTSARIVDIDDSVIWENLKDYDVLVVTGFQGVNEHGDLTTLGRGGSDTSAVALAAKLRVPCEIYSDVDGIYTCDPRVHPRAKKLAYITYDEALELTALGAKVLHSRSVEIAKKYGIPIYCASSFTEEEGTMVVERLPEWLEEPVVTGATISHGQIKVSISFLPKDVKYITAIFEEVGKKALNVDMISLVPSNGKIFLSFTILEDHKEDLDEALKEALRDVEGWKSTYEGGFAKLSIVGVGMRTSPGVAARFFEALERAGVTPELVTTSEIKISCLVPEEKAEEALKSVIEEFEL
>NC_013642.1|WP_011943770.1|1310824_1311985_+|diaminopimelate-decarboxylase
MDILWKVAEIHGTPAYVYFEETLRKRARLVKEVFEGVNLLPTFAVKANNNPVLLRILREEGFGMDVVTKGELFAAKLAGVPSHSVVWNGNGKSVDQMKHFLREGVRIINVDSFEEMEIWKELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDLFMERFGSMNVKGLHVHIGSQITQVEPFVEAFDKVVRASERFGFEEINIGGGWGINYSGEELDLSSYREKVVPALKRFKRVIVEIGRYIVAPSGYLLLRVVLVKKRSNKTFVVVDGGMNTLIRPALYSAYHRVFVLGKQGKEVRADVVGPLCESGDVIAYDRELPEVEPGDIIVVENAGAYGYTMSNNYNSTVRPAEVLVGEGGEISLIRRRETEMDIFKDVVM
>NC_013642.1|WP_012896428.1|1311985_1313059_+|amidohydrolase
MNEIELRHILHMNPEPSFREYRTKEILRKAVSDIGYEKIIEVAGTGLVIEKKETEDPYVVLRADMDALPIKEETGWEFASRNDYMHACGHDFHMSVLYGAMKRLKNVKKNFLFVFQPAEETGGGAKKVVDFLRYRYEIKAAVGFHVTDEYDAGTVASRPGVLFASATEFDVYFKGVPAHVAFAEKGKNALKAAVSFLNWLYNKKWNALVGVGKISGGRARNIVPDEVKLEGTIRSEALRITEEVISDMVKQLGELKEKTGVGFAVERGSVYPEVRVNQNLFETLRATCQRLGFSFVECDMKWTGEDFGYFSQVFPSLSFWFGVGEGERFGLHHPRFLPNDRYIPMAADLLAELAMVI
>NC_013642.1|WP_012896429.1|1313073_1313484_+|transcriptional-repressor
MTTDEIIERLKSKKVKLTTQRMEIIKFVSEMKEGHFEAKELFAILSKKIPSLSIATLYSVLYLLVDLGVIYAFSDGQKTIFDFNPEPHGHFICRECGKIEDVEIRELKLGEIKGKREKIELVIKGVCEECLKKVKD
>NC_013642.1|WP_012896430.1|1313480_1313873_+|hypothetical-protein
MRYLAQLFSLLLVIIGILGLVVWAGLYFLAPYIEGFAGIKLPENIANVLLACFLPILGSGVLLNFYTSSGIKWFVVFGFVVLSVSFVSEIYGLYVLRGIFSKIALAYLIFLLFTMVSLAYFLTIIRRDED

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Crispr_ID: NC_013642_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013642_8

1395574-1397004

Orphan

III-A

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRT

21 spacers

The CRISPR arrays of NC_013642_8

>merge|NC_013642|8|1395574-1397004|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACTCTGTTCGCAACTGGCGGGCCTTGTCGGTGTACCACCGTTTCAATAATTCCTTAGAGGTATGGAAACCTAAATGGGAAGAACTTGCTACAACAAGCAATATAACAGTTTCAATAATTCCTTAGAGGTATGGAAACAACCAGACCGCCTGGTGATAACCTACGAAAATACTAAGTTTCAATAATTCCTTAGAGGTATGGAAACAAGGTAACAACTATTTTCCCATCTGGTCTAAACTCTACGTTTCAATAATTCCTTAGAGGTATGGAAACGTGAAGCGCTCGAGAATGCGTGGTGTGAACAGGTTGGGTTTCAATAATTCCTTAGAGGTATGGAAACCAGAGAGGAGGTTGATGACGATGAGTGAACTGCTAGTTTCAATAATTCCTTAGAGGTATGGAAACGTGTCGTTTGCAAACTGCGACACAACACATTTGCAAAGTTTCAATAATTCCTTAGAGGTATGGAAACCTAAGTCCTTCCATAGAACCACTAAAATCGAAAACAGTTTCAATAATTCCTTAGAGGTATGGAAACATCTATTTGCAGTTGCATTTGCAATTATGGCATACGTTTCAATAATTCCTTAGAGGTATGGAAACCAGTCTTGTGAGGACACAGACCCGTCAGGGGCTGTTTGTTTCAATAATTCCTTAGAGGTATGGAAACTTGTGATTCCACCAACCACGCATATAACCTACGGGGAACAGTTTCAATAATTCCTTAGAGGTATGGAAACCTGGCAGGAATGTATACCCCTCCTCCCATAACTCCGGGTTTCAATAATTCCTTAGAGGTATGGAAACGAAACTTTTACCGTCATAAAAATCCCTCCTCCCTTGTTTCAATAATTCCTTAGAGGTATGGAAACAATATTTCTCACCTTCCTTTTCAACAACCGATATGTCGTTTCAATAATTCCTTAGAGGTATGGAAACCGGAATACGTTATGTCTAGTACCGACGCTATACCGCGTTTCAATAATTCCTTAGAGGTATGGAAACAATATTTCTCACCTTCCTTTTCAACAACCGATATGTCGTTTCAATAATTCCTTAGAGGTATGGAAACCGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAGGTTTCAATAATTCCTTAGAGGTATGGAAACGAGTTTCCAGTAACTTTAACTCCATATATCGAGCTATGTTTCAATAATTCCTTAGAGGTATGGAAACGAATCAACAACAATTTCAAGCATTTTGATATCCGAGAGTTTCAATAATTCCTTAGAGGTATGGAAACCTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCGGTTTCAATAATTCCTTAGAGGTATGGAAACATTCCGACGCCGGAGACATACCAATCGTGGTACATCGTTTCAATACATCCTTAGAAGCACAAAAAA

>NC_013642|8|8|1395574-1396938|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTGTTCGCAACTGGCGGGCCTTGTCGGTGTACCACC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTAAATGGGAAGAACTTGCTACAACAAGCAATATAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AACCAGACCGCCTGGTGATAACCTACGAAAATACTAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGGTAACAACTATTTTCCCATCTGGTCTAAACTCTAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GTGAAGCGCTCGAGAATGCGTGGTGTGAACAGGTTGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAGAGAGGAGGTTGATGACGATGAGTGAACTGCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GTGTCGTTTGCAAACTGCGACACAACACATTTGCAAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTAAGTCCTTCCATAGAACCACTAAAATCGAAAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCTATTTGCAGTTGCATTTGCAATTATGGCATAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAGTCTTGTGAGGACACAGACCCGTCAGGGGCTGTTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTGTGATTCCACCAACCACGCATATAACCTACGGGGAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTGGCAGGAATGTATACCCCTCCTCCCATAACTCCGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAAACTTTTACCGTCATAAAAATCCCTCCTCCCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGGAATACGTTATGTCTAGTACCGACGCTATACCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAGTTTCCAGTAACTTTAACTCCATATATCGAGCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_013642|8|8|1395574-1397004|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTGTTCGCAACTGGCGGGCCTTGTCGGTGTACCACC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTAAATGGGAAGAACTTGCTACAACAAGCAATATAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AACCAGACCGCCTGGTGATAACCTACGAAAATACTAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGGTAACAACTATTTTCCCATCTGGTCTAAACTCTAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GTGAAGCGCTCGAGAATGCGTGGTGTGAACAGGTTGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAGAGAGGAGGTTGATGACGATGAGTGAACTGCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GTGTCGTTTGCAAACTGCGACACAACACATTTGCAAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTAAGTCCTTCCATAGAACCACTAAAATCGAAAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCTATTTGCAGTTGCATTTGCAATTATGGCATAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAGTCTTGTGAGGACACAGACCCGTCAGGGGCTGTTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTGTGATTCCACCAACCACGCATATAACCTACGGGGAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTGGCAGGAATGTATACCCCTCCTCCCATAACTCCGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAAACTTTTACCGTCATAAAAATCCCTCCTCCCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGGAATACGTTATGTCTAGTACCGACGCTATACCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAGTTTCCAGTAACTTTAACTCCATATATCGAGCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTCCGACGCCGGAGACATACCAATCGTGGTACATC
GTTTCAATACATCCTTAGAAGCACAAAAAA

>NC_013642|8|8|1395574-1397004|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCTGTTCGCAACTGGCGGGCCTTGTCGGTGTACCACC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTAAATGGGAAGAACTTGCTACAACAAGCAATATAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AACCAGACCGCCTGGTGATAACCTACGAAAATACTAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGGTAACAACTATTTTCCCATCTGGTCTAAACTCTAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GTGAAGCGCTCGAGAATGCGTGGTGTGAACAGGTTGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAGAGAGGAGGTTGATGACGATGAGTGAACTGCTA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GTGTCGTTTGCAAACTGCGACACAACACATTTGCAAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTAAGTCCTTCCATAGAACCACTAAAATCGAAAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATCTATTTGCAGTTGCATTTGCAATTATGGCATAC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CAGTCTTGTGAGGACACAGACCCGTCAGGGGCTGTTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TTGTGATTCCACCAACCACGCATATAACCTACGGGGAACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTGGCAGGAATGTATACCCCTCCTCCCATAACTCCGG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAAACTTTTACCGTCATAAAAATCCCTCCTCCCTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGGAATACGTTATGTCTAGTACCGACGCTATACCGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATATTTCTCACCTTCCTTTTCAACAACCGATATGTC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGCCTTTGCTTGACAAAAGTCTTTCTGAAGCAAAAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAGTTTCCAGTAACTTTAACTCCATATATCGAGCTAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GAATCAACAACAATTTCAAGCATTTTGATATCCGAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTACTTCGCAGCCGTGTATGGTAGAAAGCCGCAGCG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTCCGACGCCGGAGACATACCAATCGTGGTACATC
GTTTCAATACATCCTTAGAAGCACAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013642.1\|WP_012311055.1\|1391820_1392777_+\|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|223791
NC_013642.1\|WP_012896477.1\|1397116_1397887_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130314
NC_013642.1\|WP_012896479.1\|1399005_1399158_+\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_011943844.1\|1386481_1388047_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|226972
NC_013642.1\|WP_012896475.1\|1390442_1391060_+\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NC_013642.1\|WP_012896473.1\|1388039_1388267_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224817
NC_013642.1\|WP_012896485.1\|1403481_1406073_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NC_013642.1\|WP_012896478.1\|1397891_1398869_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213232
NC_013642.1\|WP_012311056.1\|1391092_1391824_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223473
NC_013642.1\|WP_012896482.1\|1401424_1401982_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_013642.1\|WP_012896484.1\|1402672_1403485_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_013642.1\|WP_012896483.1\|1401978_1402680_+\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|173302
NC_013642.1\|WP_012896486.1\|1406079_1407132_+\|hypothetical-protein	unknown	unknown	unknown
NC_013642.1\|WP_011943847.1\|1389723_1390449_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|224134
NC_013642.1\|WP_012896474.1\|1388534_1389683_+\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|224180
NC_013642.1\|WP_011943852.1\|1393705_1395004_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NC_013642.1\|WP_012311054.1\|1392933_1393704_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NC_013642.1\|WP_004081672.1\|1384858_1385344_-\|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl\|CDD\|376507
NC_013642.1\|WP_012896481.1\|1400064_1401219_-\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NC_013642.1\|WP_012896480.1\|1399138_1400059_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240628

Protein	Function_ID	Function_description	E-value
NC_013642.1\|WP_012311055.1\|1391820_1392777_+\|SufD-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.55762e-69
NC_013642.1\|WP_012896477.1\|1397116_1397887_-\|ABC-transporter-permease	gnl\|CDD\|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	1.73639e-86
NC_013642.1\|WP_012896484.1\|1402672_1403485_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.78931e-62
NC_013642.1\|WP_011943844.1\|1386481_1388047_-\|4Fe-4S-binding-protein	gnl\|CDD\|226972	COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only].	2.23416e-97
NC_013642.1\|WP_012896475.1\|1390442_1391060_+\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	1.26941e-16
NC_013642.1\|WP_012896473.1\|1388039_1388267_-\|hypothetical-protein	gnl\|CDD\|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	2.00028e-23
NC_013642.1\|WP_012896485.1\|1403481_1406073_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NC_013642.1\|WP_012896478.1\|1397891_1398869_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213232	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein. DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.22136e-150
NC_013642.1\|WP_012311056.1\|1391092_1391824_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.23417e-97
NC_013642.1\|WP_012896482.1\|1401424_1401982_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	5.04006e-90
NC_013642.1\|WP_012896483.1\|1401978_1402680_+\|isoprenyl-transferase	gnl\|CDD\|173302	PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional.	1.09842e-158
NC_013642.1\|WP_011943847.1\|1389723_1390449_+\|nucleotidyltransferase	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.38534e-35
NC_013642.1\|WP_012896474.1\|1388534_1389683_+\|inositol-3-phosphate-synthase	gnl\|CDD\|224180	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism].	3.44453e-157
NC_013642.1\|WP_011943852.1\|1393705_1395004_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	7.10731e-167
NC_013642.1\|WP_012311054.1\|1392933_1393704_+\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	7.16287e-89
NC_013642.1\|WP_004081672.1\|1384858_1385344_-\|NADH-quinone-oxidoreductase-subunit-NuoE	gnl\|CDD\|376507	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin.	5.57842e-77
NC_013642.1\|WP_012896481.1\|1400064_1401219_-\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	0
NC_013642.1\|WP_012896480.1\|1399138_1400059_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240628	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains. Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	2.40327e-157

>NC_013642.1|WP_011943852.1|1393705_1395004_+|glycoside-hydrolase-family-32-protein
MFKPNYHFFPITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWKHLPVALYPDDETHGVFSGSAVEKDGKMFLVYTYYRDPAHNKGEKETQCVAMSENGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGKWRMVLGSGKDEKIGRVLLYTSDDLFHWKYEGVIFEDGTTKEIECPDLVRIGEKDILIYSITSTNSVLFSMGELKEGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNGVMSLPRELYVENNELKVKPVDELLALRKRKVFETAKSGTFSLDVEKNSYEIVCEFSGEIELRMGNESEEVVITKSRDELIVDTTRSGVSGGEVRKATVEDEATNRIRAFLDSCSVEIFFNDSIAFSFRIHPEKVYNVLTVKSNQVKFEVFELENIWL
>NC_013642.1|WP_012311054.1|1392933_1393704_+|inositol-monophosphatase
MDRLDFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFEKGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKMGVVHAPALNETLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSNGLIHDEVLKVVNEVVEEIGGK
>NC_013642.1|WP_012311055.1|1391820_1392777_+|SufD-family-Fe-S-cluster-assembly-protein
MIVKDYRKEFETLAKAYEKAGGDVSKFLDRRIASIIISGDKVIGLNGVEGVELTPHRIENGVQVDMRIKEGVVVEYPVHVCTGYLEKKGLQRVVFNIRLEKNAKAIFVAHCVFPWTEDFTHDALMNVELEEGAWMEYHDEHMHSETGSINLITRSIARVGEGAVYRNTFTLVKTRIGTLRVFMDASLEKDAVGELYTKVKAIEDDDVEVKEILRLNGMGARGLAKTNAVAIDRAKVSVVNEVYGNAPHTRGHVECLEIAKGDGVDVRALPVLVVKNDSSELTHEASIGRVNAKQLETLMAKGLTEEEATEMIIKGILT
>NC_013642.1|WP_012311056.1|1391092_1391824_+|ABC-transporter-ATP-binding-protein
MLELIDVWYEVEGKAILKGINARFEKQRVYSILGTNGAGKSTLAYLIMGLEGYRPTRGKILLDGEDITDLSVTERAKRGITLMWQEPARFTGIKIRDYLTLGGRRKVSKEELERVLELVGLNSALYLERNVDEKLSGGERKRVELASILLMKPRYTILDEPDSGIDIMSLEMIEKVLSELVNAGGSVILVTHREEIALESDYAFLICHGSILKEGNPSEIVQFYKNSCDRCDHPNEPSGEMIV
>NC_013642.1|WP_012896475.1|1390442_1391060_+|CDP-alcohol-phosphatidyltransferase-family-protein
MLRKSTDGWISSLINRRFSSRITNLILEKNWQITPNQMSFISFLVGVLAFPFYLLKVPWIAGILVQVSSVLDGVDGELARARNVSSNWGAFFDTMLDRFVDILAVLGLSLYGYLKDGPSLSLLFWSVLAVSGSLMVSYLHSVGKVFGTHPALVGKLSGFASRDVRLFVVFVFSLFGMYLPALVVVSILSYVYTTGKFVELLVLNR
>NC_013642.1|WP_011943847.1|1389723_1390449_+|nucleotidyltransferase
MREAVVLASGAGKRLRSVTGDVPKVFYRFDGCELVKYPMISLMKNGVERFVLVVSEGYRDLGEKVLNDLGVEGIVVENKKVELGNAYSFFLSEPYVESEKFFLSCGDSLFPPEALKSAFSEDEFHIKLGVSKRSDLIDPEEASKVLVNEDRIVKIGKRIDEYNYFDTGVFVMTKKVYSLKESFSWTEEISLYHVLQKAVDTGMLVKVFDFGNALWTEIDSPEDLNEKVYELMKKIKEGVAC
>NC_013642.1|WP_012896474.1|1388534_1389683_+|inositol-3-phosphate-synthase
MVKVLILGQGYVASTFVAGLEKLRKGEIEPYGVPLARELPIDFKDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFIPFGNKEDLLKAIENNDKERLTATQVYAYAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGATGATPFTADVLSHLAQRNRYVKDVAQFNIGGNMDFLALTDDGKNKSKEFTKSSIVKDILGYDAPHYIKPTGYLEPLGDKKFIAIHIEYVSFNGATDELMINGRINDSPALGGLLVDLVRLGKIALDRKEFGTVYPVNAFYMKNPGPAEEKNIPRIIAYEKMRIWAGLKPKWL
>NC_013642.1|WP_012896473.1|1388039_1388267_-|hypothetical-protein
MIVRVCMGSSCHLKGSYEVVRRFQELQKKYNFKLYGSLCFGNCSQGVCVEIDGQLFSRVTPENAEEILKRVLQNG
>NC_013642.1|WP_011943844.1|1386481_1388047_-|4Fe-4S-binding-protein
MAELIFSRETDCRYCYKCLRNCPVKAISFKSGKSTVLEEECVFCGLCLDICPQNARSYRKDVGRFLSLSRPFLVSIAPSFFAYFENPLRVIGILKEMGAVVVQETAVGAEIVSRRYEEVFEKHPGPLITTACPVVVNLAEKHFPNVLKYFAPVDSPLMAHAKFLKTRYGDFPIVFVGPCIAKKSESDLVDVALTFEELEEILEEREGKEALPDGPYPDRARFYPTTDGIGYTVSVPWEKKLVVEGIENLMRVFSRIDEYKSVFIEASACYGSCLNGPVMKKKSNGKERLLEWQKKLPKEPKVNHLKIDTFRSYRNKSRNVEVPEEEIKKVLVSIGKDDPSKELNCGACGYDSCREKARAVVLGKAEKEMCFVYLLDLVKSSSYRVVEESPNAVFVLKDEKVIYRNRVAGELIQKDPGILECAKGSVGETLNIEGKRFFFVKEFSLEDGEEVIMLVDITQEKLKDEELDKVKKETLRKVEEMLNKQMRIAQEIAGILGESIAETKSSFMELKRFMEGENADL
>NC_013642.1|WP_004081672.1|1384858_1385344_-|NADH-quinone-oxidoreductase-subunit-NuoE
MERHFEKVEEILKKYGYKRENLIKILLEIQEIYRYLPEDVINYVSTAMGIPPAKIYGVATFYAQFSLKPKGKYTIMVCDGTACHMAGSPEVLKAIEEETGLTPGNVTEDLMFSLDQVGCLGACALAPVMVINGEVYGNLTADKVKEILRKIKEKERESANV
>NC_013642.1|WP_012896477.1|1397116_1397887_-|ABC-transporter-permease
MAAFVTMIYRQFMRFLRSRSRVIGMIINPLIWIIFFGLGWSKVFDNPWAKMMFGGVDYLTYLAPGIFAMTVFNMSFISGVSLIWDKQFGFFKEVLVAPSPRKLSITGRIVGDAIVTVLQGLIILVFNYFLAKSLKISGLLPALAVGFLMSITIASFGIALALKMESTEGFQMIMMTLMMPLVFLSGAMYPIDSMPSWMKALAYINPLTYAVDASRGYLVGEKVMKFSFGLDWGVLSILMLVGLILAMESFERARIS
>NC_013642.1|WP_012896478.1|1397891_1398869_-|ATP-binding-cassette-domain-containing-protein
MEDIIVVENLVKKFGDFEAVKGVSFSVKKGEVFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLKEPREVRRKIGIVFQDQSLDRELTAYENMYIHGRIYGYGGEKLKKRILELLEFVELLDFKDKPVKTFSGGMARRLEIARSLIHKPEVLFLDEPTIGLDPHTRSHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGSPNELKRMVGKEIIYVRFSEPVECLEGDFIGSCRKLPDGRLELNVEDSGRAIPKIFELARQKDLKIQEITYHKPTLNDVFLHLTGRELREEGPENPFKTMARMRMRR
>NC_013642.1|WP_012896479.1|1399005_1399158_+|hypothetical-protein
MERVRDFFVLLFCVLLFTYEFLALNVRIMFRSVKKKKSREATPGFKFPVL
>NC_013642.1|WP_012896480.1|1399138_1400059_-|D-2-hydroxyacid-dehydrogenase
MARYRVHVNDPLDKEATQLLMSKDELEVTSEHLEKDELMKIIPEIDVLVVRSATKVTADIIEAGKNLKIIARAGIGLDNIDVQKAKEKGIKILNTPGASAPSVAELAMGLMLACARHIARATISLKEGKWEKKALNGKELLGKTLGLIGFGNIGQEVAKRALAFGMKIIAYDPAKPATDLPVEYVDLDTLFRESDFISLHVPLTESTRHIINRESIAKMKDGVIIVNTARGGTIDEEALYEALVSGKVYAAGLDVFEVEPPTDEIRKKLLSLDNVVATPHIGASTDEAQNRVGIELVEKIFKELGI
>NC_013642.1|WP_012896481.1|1400064_1401219_-|alanine--glyoxylate-aminotransferase-family-protein
MGKFLKKHYIMAPGPTPVPNDILTEGAKETIHHRTPQFVSIMEETLESAKYVFQTKNNVYAFASTGTGAMETAVANLVSPGDKVIVVVAGKFGERWKELCQAYGADIVEIALEWGDAVTPEQIEEALNKNPDAKVIFTTYSETSTGTVIDLEGIARVTKEKDVVLVTDAVSALGAEPLKMDEWGVDVVVTGSQKGLMLPPGLALISLNDKAWELVEKSRSPRYYFDLRAYRKSYPDNPYTPAVNMIYMLRKALQMIKEEGIENVWERHRILGDATRAAIKALGLELLSKRPGNVVTAVKVPEGIDGKQIPKIMRDKYGVSIAGGQGKLKGKIFRIAHLGYMSPFDTITAISALEFTLKELGYEFELGAGVKAAEAVFAKEFIGE
>NC_013642.1|WP_012896482.1|1401424_1401982_+|ribosome-recycling-factor
MVNPIIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISVSEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRRDILKKIKEDQKEGKIPEDDAKRLENEIQKLTDEFIENLDKVFEIKKEEIMEF
>NC_013642.1|WP_012896483.1|1401978_1402680_+|isoprenyl-transferase
MRIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAKVLHNTVKWSLEMGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRKERVRVRILGRKEGLSEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKKIELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKPWPDFTKKDFLRAIESYSKRERRFGGLING
>NC_013642.1|WP_012896484.1|1402672_1403485_+|phosphatidate-cytidylyltransferase
MDDLKTRVITASIVAPFVVLCFVSYESLIGLVSAIVILAGYEFITLEMKERDARFFYVILLALYPVLYGLVFEEPTQPLSILFITGVVFSLIADKDPSQVFKTIASFSIALIYITFFLSFFLPIYRNFGAANALLVLTSTWVFDSFAYFAGLKFGKTRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVIGFGTFLPFAATVAVMDTFGDIFESALKRHYGVKDSGKTLPGHGGMLDRIDGLLFVAPVSYIVFKILEGVVR
>NC_013642.1|WP_012896485.1|1403481_1406073_+|alanine--tRNA-ligase
MRYMTSEEIREAFLKFFEKKGHKILPSASLIPDDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQKCLRTVDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMMQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNEGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEENRFLKTLEQGMKVFDEIVEKKGKIDSEDAFRLYDTYGLPLELTLEIAKEKGVEVDVQEFNKYMEEQQRKSRAAMGDVEFARRYEYLEKLPKDFRTEFTGYEKLEDEGEVVLIARDDETVEEASEGTVEVVFSRTPFYAEKGGQVSDTGMVEWRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLHAALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSSEIEQVEDLVNEWIMEAIPVEVRYTSYEEAVKSGVVALFTEKYGDVVRVVEVPGVSKELCGGTHVKNTGQIGLFKIISEESVSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLSQGRISEKMITMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFSKFENKVFLVVKVSENLLDRYDASSIARNIAKELGGSGGGRKNFAQAGGRHPERIKDVLERLEEFLR
>NC_013642.1|WP_012896486.1|1406079_1407132_+|hypothetical-protein
MELVVDARELKEWVYLLDKLVGTTEPTARFLSFFYRDGLWVSASDNCAKVEIFLGEIPRFEDSRIVSLDLVKYFLSDVKVSDVRITVLQERLVLKAGNEVLDVRCKTGEIPPGDGEEEFLCTLTKREFEGALNFASSNLDEGEFLILLFEEKDVLMFGASAGIMTLAQISTIPKKPFSTKIPYVTVRHIFKAFQRLDVQTLDFYEKSGKLVVKYPHFVMEVCGDEVGEEEIKKLRALLKEKTAERIEAKKQVLAKLVRKAAVLSRGDYATISRRGESLKVQVKRKNLSYTAELFVESGRDFVVVFPSKKLRSALARMDTERIFLEITERFLKISNFSGTRVIYLELEEFF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NZ_CP017192	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_2, complete sequence	22592-22621	6	0.8
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NZ_CP011165	Xanthomonas citri pv. aurantifolii strain FDC 1609 plasmid pXfc32, complete sequence	7786-7815	6	0.8
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NZ_CP018465	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.4, complete sequence	3601-3630	6	0.8
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NZ_CP021022	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6167 plasmid pG, complete sequence	25129-25158	6	0.8
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NC_007506	Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV38, complete sequence	2074-2103	6	0.8
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	735590-735619	7	0.767
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2101228-2101257	7	0.767
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	351599-351628	8	0.733
NC_013642_3	3.1\|654178\|30\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	654178-654207	30	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	177093-177122	8	0.733
NC_013642_8	8.9\|1396139\|35\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1396139-1396173	35	MK250024	Prevotella phage Lak-B5, complete genome	186069-186103	8	0.771
NC_013642_8	8.9\|1396139\|35\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1396139-1396173	35	MK250028	Prevotella phage Lak-B9, complete genome	190952-190986	8	0.771
NC_013642_8	8.9\|1396139\|35\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1396139-1396173	35	MK250025	Prevotella phage Lak-B6, complete genome	189262-189296	8	0.771
NC_013642_8	8.9\|1396139\|35\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1396139-1396173	35	MK250022	Prevotella phage Lak-B3, complete genome	189277-189311	8	0.771
NC_013642_8	8.9\|1396139\|35\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1396139-1396173	35	MK250020	Prevotella phage Lak-B1, complete genome	190932-190966	8	0.771
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NC_019436	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence	31439-31475	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	CP034573	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence	27739-27775	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NC_017500	Lactococcus lactis plasmid pSK11P, complete sequence	32961-32997	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_CP016715	Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence	40312-40348	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	161436-161472	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_AP018503	Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence	32548-32584	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_CP031541	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence	9353-9389	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_CP016737	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3A, complete sequence	32398-32434	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_CP016695	Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence	26046-26082	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NC_008505	Lactococcus lactis subsp. cremoris SK11 plasmid 3, complete sequence	51537-51573	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_CP051520	Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence	12247-12283	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NC_019377	Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence	13341-13377	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NC_004847	Lactococcus lactis cremoris HP plasmid pHP003, complete sequence	5026-5062	11	0.703
NC_013642_4	4.5\|1025922\|37\|NC_013642\|PILER-CR,CRISPRCasFinder,CRT	1025922-1025958	37	NZ_CP016688	Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence	26053-26089	11	0.703

1. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017192 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_2, complete sequence) position: , mismatch: 6, identity: 0.8

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
ctgtttttgcggcatcgggcagcggcgagc	Protospacer
 **********.********.****  .**

2. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011165 (Xanthomonas citri pv. aurantifolii strain FDC 1609 plasmid pXfc32, complete sequence) position: , mismatch: 6, identity: 0.8

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
ctgtttttgcggcatcgggcagcggcgagc	Protospacer
 **********.********.****  .**

3. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018465 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.4, complete sequence) position: , mismatch: 6, identity: 0.8

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
ctgtttttgcggcatcgggcagcggcgagc	Protospacer
 **********.********.****  .**

4. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021022 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6167 plasmid pG, complete sequence) position: , mismatch: 6, identity: 0.8

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
ctgtttttgcggcatcgggcagcggcgagc	Protospacer
 **********.********.****  .**

5. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NC_007506 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV38, complete sequence) position: , mismatch: 6, identity: 0.8

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
ctgtttttgcggcatcgggcagcggcgagc	Protospacer
 **********.********.****  .**

6. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
gcggcgttgcggcatcgtgcggcgggcggc	Protospacer
..* . *****.***** ************

7. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.767

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
gcggcgttgcggcatcgtgcggcgggcggc	Protospacer
..* . *****.***** ************

8. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
cggccccggcgacatcgggcggcgggtggc	Protospacer
  *.... ******************.***

9. spacer 3.1|654178|30|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.733

atgtttttgcgacatcgggcggcgggcggc	CRISPR spacer
tcttccgtgcgagatcgggcggccggcggc	Protospacer
 . *.. ***** ********** ******

10. spacer 8.9|1396139|35|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 8, identity: 0.771

atctatttgcagttgcatttgcaattatggc-atac	CRISPR spacer
ctgtatttgcacttgcatgtgcaattattcctgta-	Protospacer
 * ******** ****** *********  * .**

11. spacer 8.9|1396139|35|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 8, identity: 0.771

atctatttgcagttgcatttgcaattatggc-atac	CRISPR spacer
ctgtatttgcacttgcatgtgcaattattcctgta-	Protospacer
 * ******** ****** *********  * .**

12. spacer 8.9|1396139|35|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 8, identity: 0.771

atctatttgcagttgcatttgcaattatggc-atac	CRISPR spacer
ctgtatttgcacttgcatgtgcaattattcctgta-	Protospacer
 * ******** ****** *********  * .**

13. spacer 8.9|1396139|35|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 8, identity: 0.771

atctatttgcagttgcatttgcaattatggc-atac	CRISPR spacer
ctgtatttgcacttgcatgtgcaattattcctgta-	Protospacer
 * ******** ****** *********  * .**

14. spacer 8.9|1396139|35|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 8, identity: 0.771

atctatttgcagttgcatttgcaattatggc-atac	CRISPR spacer
ctgtatttgcacttgcatgtgcaattattcctgta-	Protospacer
 * ******** ****** *********  * .**

15. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NC_019436 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

16. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to CP034573 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

17. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NC_017500 (Lactococcus lactis plasmid pSK11P, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

18. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016715 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

19. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

20. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018503 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

21. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031541 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

22. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016737 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3A, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

23. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016695 (Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

24. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NC_008505 (Lactococcus lactis subsp. cremoris SK11 plasmid 3, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

25. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051520 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

26. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NC_019377 (Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

27. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NC_004847 (Lactococcus lactis cremoris HP plasmid pHP003, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

28. spacer 4.5|1025922|37|NC_013642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016688 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence) position: , mismatch: 11, identity: 0.703

actcgatgaagaaaaaaatgcccctcaagaaagccaa	CRISPR spacer
aatcgatgaagaaaaaaatgcgccttaaagtattatt	Protospacer
* ******************* ***.**.. * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1035039 : 1045209

Staphylococcus_phage(33.33%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041434675.1\|1035039_1035948_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.1e-22	26.7
WP_012896290.1\|1035961_1037032_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_010865201.1\|1037266_1037656_+\|transposase	IS200/IS605 family transposase	W0UUZ0	Sulfolobus_monocaudavirus	1.1e-37	56.8
WP_012896291.1\|1037640_1038849_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1C9EG34	Acidianus_two-tailed_virus	1.2e-10	26.6
WP_010865413.1\|1038833_1039151_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	7.7e-05	31.0
WP_004082374.1\|1039399_1040446_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.5e-52	37.2
WP_004082373.1\|1040430_1041003_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	8.6e-23	35.5
WP_004082372.1\|1040977_1042144_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.1e-68	38.2
WP_004082371.1\|1042140_1042638_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-30	44.7
WP_004082370.1\|1042612_1043422_+	hypothetical protein	NA	NA	NA	NA
WP_004082369.1\|1043434_1044286_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_004082368.1\|1044282_1045209_-\|protease	FtsH protease activity modulator HflK	S4VT23	Pandoravirus	2.3e-09	26.5

DBSCAN-SWA_2

1173090 : 1180704

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012310988.1\|1173090_1173870_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-23	33.0
WP_012896355.1\|1173829_1174573_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_012310990.1\|1174572_1175067_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	1.8e-21	44.7
WP_012896356.1\|1175080_1176052_+	M23 family metallopeptidase	D7RWE0	Brochothrix_phage	3.0e-07	30.8
WP_012896357.1\|1176056_1176383_+	hypothetical protein	NA	NA	NA	NA
WP_012896358.1\|1176456_1177644_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.9e-139	65.6
WP_012896359.1\|1177659_1177950_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_012896360.1\|1178019_1178682_+	hypothetical protein	NA	NA	NA	NA
WP_012896361.1\|1178742_1179462_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.4e-43	43.2
WP_012896362.1\|1179465_1180704_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.9e-35	36.7

DBSCAN-SWA_3

1521637 : 1539552

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004079999.1\|1521637_1522393_+	phosphate ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.5e-17	28.4
WP_004080001.1\|1522407_1523106_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_004080003.1\|1523080_1523761_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-28	32.6
WP_004080004.1\|1523741_1524701_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.6e-16	28.7
WP_011943943.1\|1524693_1526529_-	ATP-binding protein	A0A139ZPI2	Marinitoga_camini_virus	1.6e-30	28.0
WP_004080006.1\|1526533_1528267_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.6e-41	26.9
WP_011943945.1\|1528241_1529375_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_004080009.1\|1529483_1530134_+	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	3.3e-10	26.1
WP_012311196.1\|1530117_1531848_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.4e-92	36.6
WP_004080011.1\|1531813_1532389_-	hypothetical protein	NA	NA	NA	NA
WP_004080012.1\|1532391_1533327_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3HQK7	Synechococcus_phage	1.4e-38	35.5
WP_004080013.1\|1533323_1534517_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_004080014.1\|1534529_1535888_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	1.2e-41	39.1
WP_004080015.1\|1535868_1536486_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-25	39.0
WP_004080018.1\|1536446_1537742_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.6e-46	32.5
WP_012896531.1\|1537746_1539552_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.9e-79	34.1

DBSCAN-SWA_4

1657832 : 1666551

Powai_lake_megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012896589.1\|1657832_1658555_-	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	1.5e-16	25.8
WP_012896590.1\|1658541_1659105_-	phosphodiesterase	NA	NA	NA	NA
WP_012896591.1\|1659107_1660208_-	ABC transporter permease	NA	NA	NA	NA
WP_012896592.1\|1660200_1660794_-	dTMP kinase	M1PSC7	Streptococcus_phage	6.6e-34	41.9
WP_012896593.1\|1661377_1662319_-	ornithine carbamoyltransferase	M1I6M4	Paramecium_bursaria_Chlorella_virus	9.2e-22	28.9
WP_012896594.1\|1662322_1663516_-	adenylosuccinate synthase	L7Y4J5	Megavirus	1.1e-51	33.5
WP_012311299.1\|1663521_1664817_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.0e-18	28.5
WP_012896595.1\|1665231_1666551_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	6.2e-48	27.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013642

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection