CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013720	Pirellula staleyi DSM 6068, complete sequence	6 crisprs	csa3,cas1,cas2,cas10,csm4gr5,csm3gr7,cas3,WYL,Cas9_archaeal,cas4	0	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013720_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013720_1

800828-800955

Orphan

Consensus_repeat	Method
ACTACGCTGCCATGATTAAACAGGCTCGCGCTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013720_1

>merge|NC_013720|1|800828-800955|CRISPRCasFinder
ACTACGCTGCCATGATTAAACAGGCTCGCGCTGAAAGCGATATCGACGCGGAAAGAGCTTCAAAAACTACAGATCCTACTTTGGAATTGAACTACTACGCTGCCATGATTAAACAGGCTCGCGTTGAA

>NC_013720|1|1|800828-800955|CRISPRCasFinder
ACTACGCTGCCATGATTAAACAGGCTCGCGCTGAA	AGCGATATCGACGCGGAAAGAGCTTCAAAAACTACAGATCCTACTTTGGAATTGAACT
ACTACGCTGCCATGATTAAACAGGCTCGCGTTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013720.1\|WP_012909595.1\|797812_798625_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_013720.1\|WP_012909602.1\|807379_808162_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|366542
NC_013720.1\|WP_012909603.1\|808221_809124_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_013720.1\|WP_012909596.1\|798765_800298_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NC_013720.1\|WP_123784887.1\|803867_804248_-\|Dabb-family-protein	unknown	unknown	gnl\|CDD\|369566
NC_013720.1\|WP_012909601.1\|804597_807294_-\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012909599.1\|803138_803807_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236642
NC_013720.1\|WP_012909587.1\|787822_789118_-\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NC_013720.1\|WP_012909606.1\|810244_810466_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012909589.1\|791369_792524_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_013720.1\|WP_012909588.1\|789266_790901_-\|DUF1549-domain-containing-protein	unknown	unknown	gnl\|CDD\|377872
NC_013720.1\|WP_081441575.1\|792557_793355_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|316372
NC_013720.1\|WP_044180897.1\|810515_811001_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319265
NC_013720.1\|WP_012909592.1\|794513_795746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377450
NC_013720.1\|WP_012909598.1\|801403_802990_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NC_013720.1\|WP_012909605.1\|809852_810191_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012909586.1\|786739_787747_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_013720.1\|WP_012909604.1\|809333_809621_-\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012909591.1\|793664_794168_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227231
NC_013720.1\|WP_012909594.1\|796710_797568_-\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|236238

Protein	Function_ID	Function_description	E-value
NC_013720.1\|WP_012909595.1\|797812_798625_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.47791e-105
NC_013720.1\|WP_012909602.1\|807379_808162_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	3.32025e-21
NC_013720.1\|WP_012909603.1\|808221_809124_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.76341e-12
NC_013720.1\|WP_012909596.1\|798765_800298_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.37861e-59
NC_013720.1\|WP_123784887.1\|803867_804248_-\|Dabb-family-protein	gnl\|CDD\|369566	pfam07876, Dabb, Stress responsive A/B Barrel Domain. The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Arthrobacter nicotinovorans ORF106 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	2.36861e-17
NC_013720.1\|WP_012909599.1\|803138_803807_-\|hypothetical-protein	gnl\|CDD\|236642	PRK10030, PRK10030, YiiX family permuted papain-like enzyme.	1.99169e-39
NC_013720.1\|WP_012909587.1\|787822_789118_-\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	1.39072e-100
NC_013720.1\|WP_012909589.1\|791369_792524_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	5.27474e-44
NC_013720.1\|WP_012909588.1\|789266_790901_-\|DUF1549-domain-containing-protein	gnl\|CDD\|377872	pfam07583, PSCyt2, Protein of unknown function (DUF1549). A family of paralogues in the planctomyces.	1.57448e-41
NC_013720.1\|WP_081441575.1\|792557_793355_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	2.61234e-17
NC_013720.1\|WP_044180897.1\|810515_811001_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319265	cd16408, ParB_N_like, ParB N-terminal, parA -binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	1.11075e-07
NC_013720.1\|WP_012909592.1\|794513_795746_-\|hypothetical-protein	gnl\|CDD\|377450	pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU, encoding the human orthologue of Drosophila suppressor of fused, appears to have a conserved role in the repression of Hedgehog signaling. SUFU exerts its repressor role by physically interacting with GLI proteins in both the cytoplasm and the nucleus. SUFU has been found to be a tumor-suppressor gene that predisposes individuals to medulloblastoma by modulating the SHH signaling pathway. Genomic contextual analysis of bacterial SUFU versions revealed that they are immunity proteins against diverse nuclease toxins in polymorphic toxin systems.	1.17118e-40
NC_013720.1\|WP_012909598.1\|801403_802990_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NC_013720.1\|WP_012909586.1\|786739_787747_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.9534e-32
NC_013720.1\|WP_012909591.1\|793664_794168_+\|hypothetical-protein	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	2.45597e-10
NC_013720.1\|WP_012909594.1\|796710_797568_-\|branched-chain-amino-acid-transaminase	gnl\|CDD\|236238	PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed.	0

>NC_013720.1|WP_012909596.1|798765_800298_-|ABC-transporter-permease
MYKLLLSWRYLRTRWIALASIVSVTLGVGTLIVVNSVMAGFTREMNVRLHGILADIIMESHSQDGFQNPQWHIDEIKQIVGDDLVGITAAVHVPAMINIPVRGEWIPRQVTLIGVDEATYADVSDFREYLLHPGNREKLTFRLREEGYGNVDHEMPPSGWKYRRLKVSYEREYLETQKQLQAAKQSPGSSAGGIPLPSDPFATRAAEQDAPVEAFDPIKEQYTGVILGIAIGSVRQRDAQGEVQDYYLCRPGDDVQIAFASAGQKPQALSEYFTVVDFYESKMSEYDSGFAFVPLKALQQKRGMVDPTTGAEAVTTIQLKLRDGANLVAIRDRLRDRFPTEEFPYRIQTWRDMQGPLLAAVQMETTLLNILLFLIIAVAGFGILSTFFMIVVEKTRDIGILKALGAPSSGVMSIFLNYGLALGLLGSGVGMIGGLLFVVYINQLAELIEVITGQEVFDPTVYYFQKIPTVIEPSTVLGVMVGAVLIAVLASVIPALRAARMHPVEALRYE
>NC_013720.1|WP_012909595.1|797812_798625_-|ABC-transporter-ATP-binding-protein
MAGLLSSLRSDQKHANSTGKPNAAGAEKSTRIDQPTKSNAPAILRARGLHKSYRKGKIEVPVLRGVDLDLRKGELVSIVGQSGCGKTTLLHLLGTLDQPDQGEIHFAGERIDKLAPRLRDKLRNQKLGMIFQFYHLLPELSTLENVLTPIMISQGVFQYLRYRRAHQQRAKELLELVGLGHRLTHKPQELSGGEMQRTAIARALIQQPELLLADEPTGNLDRKTGEGILEILRTLNREQGLTIVMVTHDQAIAKAADRSVQLVEGVVDHG
>NC_013720.1|WP_012909594.1|796710_797568_-|branched-chain-amino-acid-transaminase
MALQIYISGKYYDKENAKISVYDHGLLYGDGVFEGMRSYSGKVFRLEEHLDRLWDSAKAIWLQIPISKQEMGTVVNKTLEINGIRDGYIRLIVTRGAGSLGLDPNRTSDPQVICITDHIALYPPEFYEKGLEIITASTIRNHSAALSPRIKSLNYLNNIMAKIEGLQAGCVEALMLNAKGEVAECTGDNIFLVKKGKLMTPSLDSGILDGITRGAVLDIAREAGIEVAEMALTKHDVYIADEVFLTGSAAEIIPVVKVDSRPIGDGTVGPITLKLTKRFHQITRE
>NC_013720.1|WP_012909592.1|794513_795746_-|hypothetical-protein
MDTIEQAYSDCLKAVWDDDPDKLREILAQVPQVVLHNEALGTLLHNAISDSDNFEVVRLLIDAGSDINAIAPIGGNALCKAVRCKNPERSFQLVALLLERGAELALDPHCNALISAVNINNVQAVQSLLSAGYDPHYTFRTLSRNLRNALSFAIEQGRTEIAEMLRAAGCQMPHEEDVALDLSIPKEEPAAVSAETSEFSDADREAIIQAIAGEFGPVEPHALQEIVPVDAEVEVRVHVIPAGEESPFLTIFTTGMSARPMTVPEGSEAFEYAELLMHLPGDWKWKESLQEDSPYSWPFQWLRNIAYLPHLNATWLGGPHTIIASDDPPVPLGAGTDFTCLLLVADLIDCAPIELPSGRSVRVYTVVPIFTDERDLELREGVVALLKKFQKYFIPSVCLPGRPSVASMGT
>NC_013720.1|WP_012909591.1|793664_794168_+|hypothetical-protein
MKYLIEQKLLAWGDDFTIRDAEGKQIYFVDGQGISFGNKLSFEDLEKQQLAFIEQRVWAWGNEYDIERDGTLLARVSRKSASNSQAMRFFVDVPGPEDLEAVGNFIARDYKFIRHNVVVATVQSDESTGGIFVDVPGNEDAVLLLSAVIVIDLVSQEPVSSASLFRE
>NC_013720.1|WP_081441575.1|792557_793355_-|class-I-SAM-dependent-methyltransferase
MSLRICHPHEAGNFVGRALLLALLLALSTAAIAQDSTPLDDLPKAPVKRTGPPALVEYKGRRIAQTMHYLGAEWLTRDNREQEERCSLMLTSLGIKQGMTICDMGCGNGFYTLKLAKMVGPEGHLYAVDIQPEMLKFLNERADAAEISNLSPILGTFTDPRLPKGKLDLVLMVDVYHEFSHPEQMLAAIRNSLSEKGLAVLVEFRSEDPKVPIKAEHKMSKEQILKELPANGFKLVKEFDGLPWQHMMFFGRDNSWKAPTAPAAE
>NC_013720.1|WP_012909589.1|791369_792524_+|Fic-family-protein
MDIARFSAASPGQTIEIRTPARDWAFLPDALPPCDWRIPEHLWPLIADAREALGTLNGIGQTLPDPTLLVRPLQNRESLASSSIEGTFVTPEQLLLYQLDPEDQPPGNHQAADWQEVANYTAALQQGVQLLVDLPICNRVIRQMHRVLMQGVRGFSKSPGEFRKRQVLIGSQGRFIPPPAEHVEPLMSDLEHYVNLKPSSTEPLIACFLVHYQFETIYPFEDGNGRVGRALLALMIYKLLGHSHPWLYLSPYFEEYRDEYMRYLFEVSSQGAWNQWIEFCLRGTIHQAHDARQRCLQFNQLRKTFHSRISAPTARSYRLIESLFSEPIVTIPSVARKLGIAYHTAQEDIKRLVNAGILAPLEHRRPKAFSAQAVIDVAYRSSDV
>NC_013720.1|WP_012909588.1|789266_790901_-|DUF1549-domain-containing-protein
MPRSLSLACCALATLLALTLGSWASAEDLLPADKPIEEAINHYITARLAAKSITPAPLADDANLLRRTMLDLVGRPPIAAEVRAYQANTDPAKRTLMVDSLLATPSFVRQQTAELDALLMKGARGSLRDYLAEAVKNNKPWSDMFRDMIVGQEGDTEQKGAIQFIRSRTADLDQLTADASVLFFGVNVSCAKCHDHPLVSDWTQEHYFGMKSFFSRTFEVGDRIGEKSYGLVDYKTVEGESKVAKLMFLTSEVVDEPASAEPDEAARKAEKELLEQLKKEKQTPPAPAFSRRAKLVEVGLAKRDDSFFARAAVNHTWNRLLGRGLVMPVDQMHSENPASHPELLAWLARDFQEHNYDLKRLVRGIVLSEAYARSSRWEASSERPADDYFAAALVRPLKPWQYATALRLATLAPERFPADLSAEELEKRMEQTEGSARGLAGLFELPGEEFQVSVDEALLLSNSDRIQNELLRDGGDTLVGMLEKIDNTAERAETAVWQTTARNPESVEVEAIRTYFDARSDRRKEAVKQVIWSLITSSELRFNY
>NC_013720.1|WP_012909587.1|787822_789118_-|DUF1501-domain-containing-protein
MSQNPSILSGLSRRRFLTGAAAATTLVASDMTVLNVLQSQAMADELKKNQKRVILLWLAGGASQLETFDPKPGTANGGPFRAIPTNIPGVHISELMPKLAQRMQNTCIIRSLDTGNGDHGGGARLMHLGRRDEPTVKYPDLGAVIARELGRVDSQVPDYVSFYTATEGRGSAISQSGFLGARYNAMFLTEGSTPPNLRRLEQLSDVDHQERADLRKILNERFIRARTSSSMASHNEAYARVRGLMASEELFDLSKESQAMRDKYGPTLFAEQCLIARRLVEAGTPFVKVSRAWWDSHGQNFETHLELVSELDHVMTTLLDDLSDRGLLENTLVVTLSEFGRTPQINASLGRDHFASAWSVSLSGCGIKGGAVYGKSTDDGREVAEGKIGAAELFATIFKALGINHHKDYFVGARPLPLTDPGTNPVNDVLA
>NC_013720.1|WP_012909586.1|786739_787747_-|hypothetical-protein
MANHPDHLKMLKEAGHPGIFLSLTRVPNSSRLFVGNSDGKVYDVDPLVEGGKVEFKPLEGHTSYVTGVALAGETLVSGSYDCSLIWRNITTGEIVRKIENAHGKWIRQVKASPDGKWIASVGDDMVVRLWDAATGEKKHELRGHDERTPNHFPSMLYACAFSADSTRLASADRIGRVNVWDVSGGAKLATVDAPGLYTWDPKQRIHSIGGARSVAFSPDGKTIVVGGIGHIGNIDHLDGPARVEAFDWEKGEKLHEFVGEAKGLIETLHFAPDNQWLIGAGGDNGGLIYCLDLASKKVIKGEKAPMHIHAGALSEAGDKLFLCGHGRIAVFSLEG
>NC_013720.1|WP_012909598.1|801403_802990_-|lysine--tRNA-ligase
MSENTPEPMDAATEAGIHEQSRREKMKKLVALGVDPWGQRFDDRTLLGEIRAQKSAVQFHLESGEVIAAPDREADPSIDFRAWVAAQGKGEFKGPKVRAAGRIVLSRDTGKLRFVDIQDWTGRIQLFIGRAQVGENDWAISECFDLGDLIGVDGELRYTKMGELTIFAEKLHFLTKSIAPPPDKHKGLTDPELRHRMRYVDLQTTDGVLQRFLDRTKIVRSIRSTLTEQGFCEIEGPTLHAIAGGAAARPFTTHHNALNIDLFLRIALELHLKRLLVGGMERVFELGRVYRNEGLSPRHNPEFTMLEVYQAYGDYRSMMDLTESIICNAIRATDGKFVRPWGEKTIDFTPPFARKTYDELFAEHAGVDPSDAAAVKALAEKLGFDTAGKHPDVIKSEVFEEKVEDALVGPIFVTDYPASICPLTKRKREKPEVAERFELFVYGMEVANAYTELNDPDLQDQLFRTQLDGMAEEDSMAKMDHDFIRALKHGMPPAGGLGIGIDRLVMLLTNTASIREVILFPLLRPEQE
>NC_013720.1|WP_012909599.1|803138_803807_-|hypothetical-protein
MPAPSRRARERQIFVALLAVFVVLALVVVGATYGPAILARLRYQPREGDVIFQSLPHSPLVSAIEGATESPFSHCGIVARLDGNWVVYEAYAAVGATPLSEFLMRGRDEHFAVYRWRDDLQPLVPQLLEATRAYQGRPYDVRYQMDDEKIYCSELIYKAYRDASGGETVGKLVRFGDLRWQPFEKTITQIEQGPVPVDRQLITPKDLAAASQLQLIVSFGLP
>NC_013720.1|WP_123784887.1|803867_804248_-|Dabb-family-protein
MALLATTLLASSLATSLQAAEPQIGHMVFFTLKDNTPETRKTLIDACNKYLSKHEGTVYYSAGARGEEFAREVNDQTFDVALHLVFKDKAAHDLYATHPRHLKFIEECKANWKTVRVFDSLVTPVE
>NC_013720.1|WP_012909601.1|804597_807294_-|hypothetical-protein
MKPHITILPLILATFCILGSEAAEIVSTTEWPAAAVVLSCDFENPTDINRDQWPDRWTRRRGRGYPEYVKVQIVDDPDAPRARRVLEMQLNGGGAAISTPITPISPQYSFVATANLQTRGLARDVAFISLSLLDAEGQLLETHKSPELSGDTTWQRVQIGPIAPATNRAVKAVLTLHLIPSELREDLTGSAWFDDVTLIRLPRMTLHPTTTAGLFTQPRDAEVQCDVSGIDDPRPELVFELMDHEGKVLSTSSQTLNLGAQWPGISATKPLASETSLTTTSGKQLEGLAGSTRFRPMVTDVGFYSVRVQLRSRGVTLLTERTSFVVLRETTFASDGQFGWSLPDADTQLSMNDLATLLSHSGLHWAKFPVWGETAKSERIDRVSWFAERLSIQNIDLIGVLDQPPKELREVFREKGPLPVASVFIEPELWHPVVDPVMTRLSLKVRYWQLGSDSDTSFVGFPEAATKLTEIKEHLQRFGQEVKLGVCWKWMNEVPPAATPPWSFLSYGGEPSLTPAEIEAYLKIPPRTAQEEAQQKFARWVQLRPLPKSDYPMQTRACDLVWRMLATRIGGAEMAFVPEPFDDQCGLLHRDATPTELYLPWRTTSSAISGAEYLGSLTLPGGSENHVFSRDGEAVMMIWNHTPTTELIELGENLRQIDLWGREIKLERQSVDGRDQHQVLVGPVPTFVTGIVDPIARWQIGLSFTSPRVASTFGREQTIEFTVKNPFPRGVGGEVTLIPPASWETDPRAKRFKLASDDQLSEKMTIALKPDASSGDQPLALEFLLTVDKVYKFRVYRSLSLGLADVKLELSTRLRSDGMLVVEQHMTNLSEKSVNFECTLFPPGRRREIRQVIDQAPGRSTLTFLLPDGKDLVGKTLWLRAEEIGGDRILNSTTTAEP
>NC_013720.1|WP_012909602.1|807379_808162_+|sugar-phosphate-isomerase/epimerase
MLQIKVGVQLASLRLPFRQALLTAREMGADAVEIDAREELKGEELSVTGIRQIRKMLEDLNLRVAAVRFRTRRGYDVQQDLDERVDATRRTLKLAYDLGTHVVINHVGRIPAEVTHPAFQTMVDALTDIGRHGQRVGAMLAAETVAESGADLKRLIDALPPASIGVNLNPAPLIMNGQSPREVVDAVGQHVLHMNATDATRDLSLAQGIETPLGYGSAEIPELLAVLEEHQYRGYFTVERHQSNAPQVDLKQAITFLRNL
>NC_013720.1|WP_012909603.1|808221_809124_+|tetratricopeptide-repeat-protein
MNDSVRRYTPSMLAQLAKVNVAQVRAWHRRGWLLASDERNRVKYYDFSEVAVARQLATLYRGGLTPASIEKQLKDLKARFPGIERPLAELSIVVEGRQILVRQARGLSEPGGQLRIDFRGLDEEDDAQSGAPSVIASPAMFLRRGQESDEAAPENLAKWAEELQEVGELRAAADMYRAALAAGGPTPRLCFELAELLYRLGELGAARERYSMVIELDENDVEARANLGCVLAELGEKSLGIAALSGAIDCDPQYADAHFHLARLLDETDEPDAATRHWQAFLALAPDSPWAEEAADRLQL
>NC_013720.1|WP_012909604.1|809333_809621_-|hypothetical-protein
MAKKKSVKKVGGDDASLRSPRKEPYSSQKITGVQERIREQATRFAALARAMDDSKIDAIDIDGHAMLMRGLNQIDNFLDNASRAVREAKVAKSQS
>NC_013720.1|WP_012909605.1|809852_810191_+|hypothetical-protein
MISRVDPQQQARAKLLIFQGISHLSISKRLGLHRATIARIARGDLEAPEPREDHPPGYDERQKRRCPTCGHLVYLWPCLACELETPTGPPDAVPAPPPRQDERRRRADRSFR
>NC_013720.1|WP_012909606.1|810244_810466_+|hypothetical-protein
MSLEHTVSLLTTLVGLGVSILLASIPWAYGIHGRLTRIETTLAESLPHKPRLEEIDRRLARVELLQERDATQA
>NC_013720.1|WP_044180897.1|810515_811001_+|ParB-N-terminal-domain-containing-protein
MSSPTLKRELRWMKATLLKRHPLKLRAAAPQDRKRVEEQIEQLGCVTPIIAHPRDDGSLEILDGHLRAEIAGENLVPVVVLECDNAASAPIFAALQQRSDRPQVTSRYAKKTPADLVRDAEKIPASYQLLVDCGAEPQQRLLFDALEAQGLRCRVLTLTTS

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Crispr_ID: NC_013720_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013720_2

1403843-1405020

TypeIII

Consensus_repeat	Method
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CRISPRCasFinder
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CRT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	PILER-CR

16 spacers

cas1,cas2,cas10,csm4gr5,csm3gr7

The CRISPR arrays of NC_013720_2

>merge|NC_013720|2|1403843-1405020|CRISPRCasFinder,CRT,PILER-CR
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACTTGTAGTTCGTACGGTGCTCTAACCAACTGAGGGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACGACGTCATACGCGTCGTGAGACGTTGGTACGCCAGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACCCAACCCGACTCAGGGAGATTCTGAAGAACGCTAAGGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACGCGCACCACCAAACAGATCTCACGAGAGTCGCGCTTAGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACTCTGGCTTCTCAGCCGGAGGCGCCTTTGGCTCCTGTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGACGCCTCCGTCGGTGAGTTCTTGATGGCGTCATTTTCGTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGACAGGAATTGTTTCCGCCGTTCTTCACGAGCTAAACGCTGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACTACGTCTCGAATGACCCGTGCGTGAAGTAACGGTGGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACCCGCCGCGATCGGAAAGTTCAATCCGTTCACGCCTGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACCCGACATCGCTGACATAGTATCGTGCAACTTCCTTACCCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACCGCGGAGCGGCAACCGGGATGTCGATCCCGAGACGATCGGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACACTCGGGTTTGCGAAATCCTCATCGACACTGATTGCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACGAAGGAATGTGCCTACGCGACTACTACACGGAATCGTGCGTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGACTGCGTGAAATACCGATGGTACCCCACCGTCACCCGAGTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGACTTCCCTTGCAGGAGGCTCACGGCTGTCATTGTTAGGTTTCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACGGACTCCTCGTAACGGTCCTCCATGTCCTCACGGTGCAGGGTGAGAAAGAGGCCCTTCGGGGCCGATCTTTAA

>NC_013720|2|2|1403843-1405020|CRISPRCasFinder
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TTGTAGTTCGTACGGTGCTCTAACCAACTGAGG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GACGTCATACGCGTCGTGAGACGTTGGTACGCCA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCAACCCGACTCAGGGAGATTCTGAAGAACGCTAAG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GCGCACCACCAAACAGATCTCACGAGAGTCGCGCTTA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TCTGGCTTCTCAGCCGGAGGCGCCTTTGGCTCCT
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	GCCTCCGTCGGTGAGTTCTTGATGGCGTCATTTTC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	AGGAATTGTTTCCGCCGTTCTTCACGAGCTAAACGCT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TACGTCTCGAATGACCCGTGCGTGAAGTAACGGTG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCGCCGCGATCGGAAAGTTCAATCCGTTCACGCCT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCGACATCGCTGACATAGTATCGTGCAACTTCCTTACCC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CGCGGAGCGGCAACCGGGATGTCGATCCCGAGACGATCG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACTCGGGTTTGCGAAATCCTCATCGACACTGATTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GAAGGAATGTGCCTACGCGACTACTACACGGAATCGTGC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	TGCGTGAAATACCGATGGTACCCCACCGTCACCCGA
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	TTCCCTTGCAGGAGGCTCACGGCTGTCATTGTTAGGTTTC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GGACTCCTCGTAACGGTCCTCCATGTCCTCACGGTGCA
GGGTGAGAAAGAGGCCCTTCGGGGCCGATCTTTAA

>NC_013720|2|1|1403843-1405020|CRT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TTGTAGTTCGTACGGTGCTCTAACCAACTGAGG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GACGTCATACGCGTCGTGAGACGTTGGTACGCCA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCAACCCGACTCAGGGAGATTCTGAAGAACGCTAAG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GCGCACCACCAAACAGATCTCACGAGAGTCGCGCTTA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TCTGGCTTCTCAGCCGGAGGCGCCTTTGGCTCCT
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	GCCTCCGTCGGTGAGTTCTTGATGGCGTCATTTTC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	AGGAATTGTTTCCGCCGTTCTTCACGAGCTAAACGCT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TACGTCTCGAATGACCCGTGCGTGAAGTAACGGTG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCGCCGCGATCGGAAAGTTCAATCCGTTCACGCCT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCGACATCGCTGACATAGTATCGTGCAACTTCCTTACCC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CGCGGAGCGGCAACCGGGATGTCGATCCCGAGACGATCG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACTCGGGTTTGCGAAATCCTCATCGACACTGATTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GAAGGAATGTGCCTACGCGACTACTACACGGAATCGTGC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	TGCGTGAAATACCGATGGTACCCCACCGTCACCCGA
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	TTCCCTTGCAGGAGGCTCACGGCTGTCATTGTTAGGTTTC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GGACTCCTCGTAACGGTCCTCCATGTCCTCACGGTGCA
GGGTGAGAAAGAGGCCCTTCGGGGCCGATCTTTAA

>NC_013720|2|1|1403980-1404947|PILER-CR
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCAACCCGACTCAGGGAGATTCTGAAGAACGCTAAG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GCGCACCACCAAACAGATCTCACGAGAGTCGCGCTTA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TCTGGCTTCTCAGCCGGAGGCGCCTTTGGCTCCT
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	GCCTCCGTCGGTGAGTTCTTGATGGCGTCATTTTC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	AGGAATTGTTTCCGCCGTTCTTCACGAGCTAAACGCT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TACGTCTCGAATGACCCGTGCGTGAAGTAACGGTG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCGCCGCGATCGGAAAGTTCAATCCGTTCACGCCT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CCGACATCGCTGACATAGTATCGTGCAACTTCCTTACCC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CGCGGAGCGGCAACCGGGATGTCGATCCCGAGACGATCG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACTCGGGTTTGCGAAATCCTCATCGACACTGATTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GAAGGAATGTGCCTACGCGACTACTACACGGAATCGTGC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	TGCGTGAAATACCGATGGTACCCCACCGTCACCCGA
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	TTCCCTTGCAGGAGGCTCACGGCTGTCATTGTTAGGTTTC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013720.1\|WP_012910082.1\|1399579_1402642_+\|HsdR-family-type-I-site-specific-deoxyribonuclease	unknown	unknown	gnl\|CDD\|273028
NC_013720.1\|WP_012910087.1\|1411809_1413309_+\|hypothetical-protein	cas10	cls000707_cas10_CAS-III	gnl\|CDD\|224272
NC_013720.1\|WP_044181114.1\|1399129_1399573_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910076.1\|1392260_1392503_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_013720.1\|WP_012910073.1\|1387228_1388392_-\|lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NC_013720.1\|WP_012910089.1\|1415287_1419106_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_013720.1\|WP_012910085.1\|1407931_1408204_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_013720.1\|WP_012910092.1\|1421850_1422843_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910083.1\|1402641_1403358_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NC_013720.1\|WP_012910084.1\|1405106_1407935_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|238828
NC_013720.1\|WP_012910080.1\|1397755_1399021_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341199
NC_013720.1\|WP_012910088.1\|1413305_1415291_+\|hypothetical-protein	csm4gr5	cls000259_csm4gr5_CAS-III-D	gnl\|CDD\|187857
NC_013720.1\|WP_012910072.1\|1386703_1387213_-\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910093.1\|1422887_1423694_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_013720.1\|WP_123784678.1\|1425311_1426013_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910086.1\|1410067_1411780_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910078.1\|1393323_1394208_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198394
NC_013720.1\|WP_012910075.1\|1390514_1391981_-\|DUF3987-domain-containing-protein	unknown	unknown	gnl\|CDD\|379041
NC_013720.1\|WP_012910096.1\|1424604_1425294_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_044181111.1\|1395362_1397765_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|223363

Protein	Function_ID	Function_description	E-value
NC_013720.1\|WP_012910082.1\|1399579_1402642_+\|HsdR-family-type-I-site-specific-deoxyribonuclease	gnl\|CDD\|273028	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family. This gene is part of the type I restriction and modification system which is composed of three polypeptides R (restriction endonuclease), M (modification) and S (specificity). This group of enzymes recognize specific short DNA sequences and have an absolute requirement for ATP (or dATP) and S-adenosyl-L-methionine. They also catalyse the reactions of EC 2.1.1.72 and EC 2.1.1.73, with similar site specificity.(J. Mol. Biol. 271 (3), 342-348 (1997)). Members of this family are assumed to differ from each other in DNA site specificity. [DNA metabolism, Restriction/modification].	1.7284e-140
NC_013720.1\|WP_012910087.1\|1411809_1413309_+\|hypothetical-protein	gnl\|CDD\|224272	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms].	0.00132765
NC_013720.1\|WP_012910076.1\|1392260_1392503_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.33982e-10
NC_013720.1\|WP_012910073.1\|1387228_1388392_-\|lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	5.92082e-147
NC_013720.1\|WP_012910089.1\|1415287_1419106_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.3236e-73
NC_013720.1\|WP_012910085.1\|1407931_1408204_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.53617e-15
NC_013720.1\|WP_012910083.1\|1402641_1403358_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	1.24653e-53
NC_013720.1\|WP_012910084.1\|1405106_1407935_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|238828	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).	1.69712e-59
NC_013720.1\|WP_012910080.1\|1397755_1399021_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341199	cd17518, RMtype1_S_Asp27244ORF1181P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Acinetobacter sp. S subunit (S.Asp27244ORF1181P) TRD1-CR1. The recognition sequence of Acinetobacter sp. S subunit (S.Asp27244ORF1181P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.0651e-66
NC_013720.1\|WP_012910088.1\|1413305_1415291_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	6.80824e-07
NC_013720.1\|WP_012910093.1\|1422887_1423694_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.37403e-23
NC_013720.1\|WP_012910078.1\|1393323_1394208_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198394	cd10447, GIY-YIG_unchar_2, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria and archaea. The family includes a group of uncharacterized hypothetical proteins, mainly found in bacteria and a few found in archaea, with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	1.2122e-37
NC_013720.1\|WP_012910075.1\|1390514_1391981_-\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.40337e-73
NC_013720.1\|WP_044181111.1\|1395362_1397765_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	9.67188e-128

>NC_013720.1|WP_012910083.1|1402641_1403358_+|M48-family-metallopeptidase
MSEVLQLGDLAIELIQKDIKNVHLSVHPPHGRVRIAVPKNMTRERVRVFAISKLAWIRQQQKKLREQARESRREYSERESHYVWGKRYLLTILEKNEPPKIELLHRKLRMTVRPVTDEVQRAALLEGWYRELIRQRAPDFIERWQKQLGVEHSKFFVRRMKTRWGSCNPVRRTIRLNTDLAKKPIECLEYVIVHELMHLLEPTHNARFVRLMNHHFPSWQQCRNLLNRLPVRHEDWRV
>NC_013720.1|WP_012910082.1|1399579_1402642_+|HsdR-family-type-I-site-specific-deoxyribonuclease
MSTIGAPERETQSRVIQLFCQELGYDYLGDFRDRDGNSNVETTLLEKWLAARGYSPAQISAAIYRLTSEAHHPNRKLMASNKAVYSLLRYGVPVKVEVGSPTETVHLIDWSHPEQNHFAIAEEVTLQGDHDRRPDLVMYVNGIAIGVIELKSSIASIGEGIRQLLSNQQTQFHAWFFSTVQLVLAGSNSEGLQYGTIGTEEKYFLKWKEDETDNSRFKLDKYLLKICRKDRLIELLLDFVLFDGGVKKLPRVHQYFGIKAAQEHVRQKKGGIIWHTQGSGKSIVMVLLAKWILENYPQARVAIITDRDELDKQIEGVLRDAGAIGENDQVRATSGSDLMVKLAQPTPRLICSLVHKFGRKKVDNFEKFIEELEAQPSPAVGELFVFVDECHRTQSGKLHRVMKALLPTATFIGFTGTPLLKDDKATSLEIFGGYIHTYKFSEAVEDKVVLDLIYEARDIDQRLSSPEKIDEWFEAKTRGLNDWQKNELKTTWGTMQNLLSSKSRMNRVVADILHDFSCRPRLKSERGNAILVASSIYEACKYYKLFQETPLKGKCAIITSYNPQAKDITKEEVGANTETDKQFVYNTYTDLLTDVAPNPKQSKTETYEENAKHLFVEEPANMKLLVVVDKLLTGFDAPSCSYLYIDKSMQDHGLFQAICRTNRLDDDSKDFGYIVDYKNLFKSVQKAIKVYTSEIDKTSGGSDPEVLMHDRLTKGKERLDNAIEAIELLCEPVDPPKAELEHIRYFCGNTEVPTDLKEREPMRVALYKATVALLRAYGSIADELEEAGYSAGEVKRIKKRLDHFVNMREIVRKASGETLDLKPYESDMRHLIDSYIDASEPRKISPFDNMGLLELIVKTGIAEAIANQLGGMKGNQDAIAETIENNVRSKIITDRNNDPAFYDRMSTLLDEIVAARKAKAIKYEDFLKKVAELAKMVHEGKDAELSAKLNTPGKRALYNNLANDEATALKIDETVKAVRPDDWRGVQAREKIIKAALYGVLQDSEQVEKVFEIVKAQKEY
>NC_013720.1|WP_044181114.1|1399129_1399573_+|hypothetical-protein
MEPLELEKVIAFVADRIARKIAYKVMLDLRKMPCTMSGDDSGLSNVWEEICVQVQYEESHCWDIYEQMIRDLVESYVDELPIELYNAVWLQTDPGFDWLYASPETRNPSPAESTSASKWVYDFVISRADSWSNKAVRRYLRRASERD
>NC_013720.1|WP_012910080.1|1397755_1399021_+|restriction-endonuclease-subunit-S
MAVKPGFKMTEIGEIPAEWNAYHLSQLWKVTDCKHVTATFVPEGYPVASIREVQSKFVNLHAANHTTPHFYRLLIEGGRDPQAGDLILSRNATVGQIAQVSHSHPKFAMGQDVCLLRKTSPTNSTEFIQAVFQSRIIKQQISDILVGSTFKRINVKQIKAFIVPSPSAAEQRAIAGALSDVDALIESLEQLIAKKRAIKQGAMQELLTGKRRLPGFSGKWEKKRLQQIAWYQEGPGVQKHQFASVGTKLLNGSNISHGELFLDQTERYIEDQLANGTYRHFLCDAGDIVIASSGISPATLNEKMAIVQASHLPLCMNTSTIRFKANQDLATQAFLFVCLQGNSFRDQIAGMATGSAQLNFGPSHLNKVELLLPTISEQVAVADVIGSLEHELRKLDDRLTKLRLLKQAMMQQLLTGKIRLV
>NC_013720.1|WP_044181111.1|1395362_1397765_+|type-I-restriction-modification-system-subunit-M
MALKKSSLYSSLWSSCDELRGGMDASQYKDYVLVLLFLKYISDKYANVPYAPIEVPKGSSFKDMVALKGTKDIGDDINKKIIAPIAQANRLSDMPDFNDSTKLGSGKEKVDRLTNLIAIFENKSLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQIIGIKTAKTTGSTTVYDPTCGSGSLLLKVSDEAQTPVTLYGQEKDAATSGLARMNTILHNMPTALIEQGNTLSNPRFVDGSSLKTFDYVVANPPFSDKRWSTGLDPASDPHARFTLGIPPAKQGDYAYLLHIIRSLKSTGQGACILPHGVLFRGNAEAEIRKNLLRKGYIKGIIGLPANLFYGTGIPACIVVIDKKEANRRQAIFMIDASSGYMKDGPKNRLRARDIHKIVDTFNQQLEVPKYSRLVTIEEIEKNDFNLNLPRYIDSQTPEDIQNIDGHLKGGIPVEDTTSLEPYWKVCPGLQKALFKKNRTGFVDLRVEPAEIKTTIYQHPEFTQFITQMNQHFDTWRQKAAKTLKALDAGHHPKQLIAKLADGLLEHYQASPLIDPYAVYQHLMDYWETTMQDDCYSIAADGWKAEPQRLVEQTKAGKTKDRGWACDLVPKSLVVARYFAKQQAEIDSLAAMLEAASAAIAEMEEEHGGEEGLFAALEKISLASVKARMKEIVAEGDTLSREEFELLEKYCALVQGETTLRRDLATKTDELDQLALEHYAKLTPAEIKTLVVDDKWLATLAAAVQGEMDRISQSLTSRVKELAERYREPLPQLTLRCQQLEAQVNTHLERMGFSWQ
>NC_013720.1|WP_012910078.1|1393323_1394208_+|GIY-YIG-nuclease-family-protein
MPKFQQRPFSITIFVPDGDPDSLRLVEKSNWTGIGVVFNRTNYKQVVLQEEFERTGVYVLVGDSETSGLPTIYIGEGDPVKYRLNSHYSQKDFWDWAVFFVTKDSSLNKAHVQYLEARLIELARAAKQCKLANNQSPAAPSLSKAQTADVESFLADMLSIFPLVGLGVFEATESSPKAQQQMFYIASKGIKASGYEDPKGFVVLKGSQVMKTEAPSIGPYLKALRTDLLDGGVIALSGEYYVLTQDYVFTSPSTASSVVQGRRSNGRADWKTKDGVTLREIQESAAGLVENSGE
>NC_013720.1|WP_012910076.1|1392260_1392503_-|helix-turn-helix-domain-containing-protein
MSKDAGLVAGKSGEKLALRSKEAAKALGISEKTLSKWTKENKIPHLRVNGIVLYPIEALSKWLESSMAQGTTEQVVSSKF
>NC_013720.1|WP_012910075.1|1390514_1391981_-|DUF3987-domain-containing-protein
MSKVLPGEFTPFPLDGFPVSIQKALWNASKSIDCDVSFLGLPVLTAVAGVVGNRVMIECKPGFRTVPTLWSMIVGRSGSAKSPAIDFVMKWLRKRESTALYNRIRTAVAAKSQSPPKKPKKGEEAAPLPPVELPPPIPMNLDCERLLLDDITIETVYDEHAKSPSGLLLVHDEGHKFFAGMNRYAKSGGGSLDESKWLQLYDGRYAAIDRKTGNPRSVMIKQANVSITAGIQPKMLSLAVKPEYFGSGLVPRFLFAFPPARVRRSNDIPIEVDSVQAIEHLFRRLMDIRGKLADAPESLIVTLPEDVRRRYYEFTDELRESDPTDEDDMSACITKMECAVLRLALILHLVKWASAPGKSNPSTELSIEELDNAIELARWFKVQAERVYAYIAGNRSMDNDQKLLNMISKREHGMTAREVQQNASWLKNIEDTEKALHRLYEAKNLDKVLRTPRQGPVTTIYVATSATKDEGTAEIDGKCEYKSSDPPF
>NC_013720.1|WP_012910073.1|1387228_1388392_-|lactonase-family-protein
MLRRFLHLAPQLALGLAAVMLGNVALAEESAKQRLYFGTYTTGNSKGIYTAELDLSTGVVTKPVLVAEAMNASFLAIAPSHKYLYAVGEISEFDGKKVGVVHAYSINKATGELQLLNRQSSAGAGPCHVSVHPQGSYVFAANYGGGSICALPVKDDGSLGEATGFVQHTGSGPNQGRQKEPHAHSINPDAAGKFVFAADLGIDKVLIYKLDPSTGKLVANDPAAGTVPPGSGPRHFAFHPSGKFAYAINELTSTITAYAYDAEKGSLAQIDTISTLPAGFSGNNSTAEIQVHPSGKFVYGSNRGHNSIAIFTVDEKTGKLAAVGHTEGGIDTPRNFGVDPTGQWVIVCNQGGKSAFVYKVNLETGILTRTGEAIEIDAPVCVKFLPL
>NC_013720.1|WP_012910072.1|1386703_1387213_-|hypothetical-protein
MNDNPSSMTCHVPAHCRRRMTIGLVLAGLFLVLNVALPVCVGDFYPFTSAPMFRDAPQQYCNYKIVNERGEPMDPKATLCQRIYDGNPVGYGVGLEPPPVIEEFGCVRTEEELTAHLKKLLQRPEHAGCQALTITQEVIGSHADGSVDVVQVDEVTVSRDAVSAAGSSQ
>NC_013720.1|WP_012910084.1|1405106_1407935_+|CRISPR-associated-endonuclease-Cas1
MQIFRVRVLLRIKTATRMHAHHAAILYALLCEAHAAAHQIDPCIPDGLLLDAPEQARLMLAAGSKYAFGFTLLAPTERQACTVVDHLVRGLRKVGRAKTKPKPALGGNFEVELVEDLVAKQTHRTGHPLQPIAIEAITQEIAALEGLVQLTLQFHSPLRAHRPKKARRDGHQFFDDHYFHPQALLHRLQSRIESLGICPAPFQPHLRPQAAAPLDGWPEPASPLPEDAAEPISHSPIPAVVSNELVWLDVSYGPRHSRKTLGGAVGSVKLDGLQPATIATLVWGQYVRIGEGTRFGFGAYRIAELASDPYVCERSTRLLDLATEHPALDQAASKWDLGGGEVQSAARDLVKGTYQPQPCFRLDIPKSNGDRRQLAIPSRLDRVLQRSILDVIAPALELFFEESSFAYRRGLGRHTAARHLSQAFTDGYRWALHADFFDFFDTIDHKLLRRRLAAYLADPSLVEVIMRWVETGAPHPDHGIPTGAPLSPILANLFLDQFDEAMHSVGRRLVRYADDFVVLFRDQSEAQAVISEVRQAAESLRLELNRDKTHTLHLATSFDFLGLHFEPREIWEVTTIDEPQLIEQLGWKERSRKPSGGVLHPLPGESQLATPLPGTLIAGPGIEEILVHGDVLQFKHQDQRGIESIPLHTLREVVVLGAVSLSHRVLSAIQQNAISLLLLDESANRTAYIDCQNAEPDSAGIEAQVDLIRNPESSLAIARQLISAKLHNYATLADAYPPKSHSGNAHRSLMRLAKDAQQASSLPELLGIEGSGAALWYGEIGMRLSPGFHWERRVAPNAHDPVNILLNLAQTVLYRMTQHAIAQAKLVDTLGFLHQPRAGHAALASDMQEPFRHLMDRAVLETVRRIRPEEFEPDERGPFPVRMKPRALRESLAWIHRILALPCNGAGQSSPTAYRLQIFKQVRSFRRFLMDPGGRFEPFRHP
>NC_013720.1|WP_012910085.1|1407931_1408204_+|CRISPR-associated-endonuclease-Cas2
MSLYLASYDISDDKRRAKVARFLLQFGARLQKSVFEIDLDPDEIAEFRRDVGSILSQKDLFVLVPVDERGSRSTLSWQRELRRMDAVIVL
>NC_013720.1|WP_012910086.1|1410067_1411780_+|hypothetical-protein
MSQPASPATEIPVELFRQILIWPLLIHAPHGESAMELMDLVTDELERHSWHWNDRSAGQSASPLKGLPWYQDDHDYSEIVYFHSYVRDFLYGGDGTPASERPLRVLRRTDIASLLLKVDEGREYRLKVERVEAYLFDSGILQVVVEVAAPQLVSKSPTDSEQLRPFMLSDALDLQNVLRMAFPRRWKPKTGIPSETPHRACWLNSEGSEIAGSVQDFLNQEDFTRIVREQAELPAAKHWQYLVQPLPLFERRVCTGLSVKQIEDQRLPSMSYIAVPDPRLISDGDFERIAFFDSAGQSSVGSYSDEFLVGWEKDHAYDRFWQRLPSEGGPEVALHNQMMRTRWLCSGYGFAVVGASGDKFFTTQIAANFRHHYFRMGLIAHFHRAKLISLRDQLAEATKQVGENFRNRVMEIQRSATIFRARFWFHEVSTQLQGREIFTWWSNRLGNPSLFEHVISDIEAAESQVRTEFEAEESQDINLITRVGGAIGILSIVLSIVALIISLLALEAISPLKQFAIMPANPWDWTVANLWLGRIASIACPLSIVSLWILLVVYGGLRYYKSHRRTRRLR
>NC_013720.1|WP_012910087.1|1411809_1413309_+|hypothetical-protein
MTVFVMPSFLLRLEAVNFSESCYDTCDISTIRGGSMMLSNAHELARVVLPQEIQHEPTSFGASHAIWQFEAADANAAEKVRNDTLHALAKHKQLRHATFVCAVVANDDGSADALHRLRMHNHWRQYQEPTVVPPDLPDAKRQGKRICELDHVRPATMEIRKGNDSYWVSTSTYDRRVYGRKQKRMFYKELCGSDLAVVHDLSDLTSHLESSQHRLHGKMALIYIDGNQQSEMAADLSLDRLSKFRQYVREQHRRFLTTLLEEIVQLMPAQGSSNEWFHWDSEQNELQVRLETLLWGGDDIVLVVPAWKGWYVARKFYEAAQGWEFGGQKFTHATGLIYCSHKAPIQDMRRYAEDLVVQCKKTKNSEGNYQDLMGYEVLESIDVISSDLDRWRSARLGESEKSGAEAIASALLLSPAQMDGIESMIRSIRVGVDDPDSILSRRQIERRARRMQHSMIGDEQFDSDVTNYFAGSEFEKIGLGPHSLRAKLFHLTAMWDYLT
>NC_013720.1|WP_012910088.1|1413305_1415291_+|hypothetical-protein
MIHVELEIKLTLVGPVLTQATSAGRLGLDAVMARTSAGHPFLPYSLVRGKLRQALEEVSSPLQSEDQRNVEQLLPIWFGPRSSSKEAEQERGALCFSDFICPEPKDDLATQTRIRIDRDTGAAEDKMMMVFDSPFKVGEEAPFIGRIWCICGSVGQAESTIKYVLAGLRWVRQFGAEKTIGFGCVSNVDLLKATVTDLAPHSQATRNTITQKLSNLLAKTGSKVIHRSRKPNAPEDGGHGTRFLLRIQPQGPICIGGRRRNANVFESEEVIPGGVLVGTLATMWRQANNKPPSDFVVQPSGGKWDTLAEHFERLVFSHAFPSKRGSGIRPCAIPMSLVSAEPRHGDIPDSLFDVALCSRPRLIPAIGSNLLRPPVFQSDWKSHVVGSKAKAIFGWSSVPRELRVRTAIDIETLRASDEQLFAYEMVVPDQHEWLGYLDLENVPPQDRAMLLEELESLLSAGLCPIGKTKIDASISIEPYTAATPMLPSSSTPLPGNVWVITLQTPAILCASTDLEDPTGEQLFDGYRKAWKTLSDESLELQRFFARQSLSAPRFAGRLPTNSSGQFYPFVVTDAGSTFVLRATGDVRDAQLKVKEWLNLGMPLCDYLLGGSQADKADRDWQRSPYLNRHGYGEVAVNQPWLLGHDSSVVMPQRLDDEEGTI
>NC_013720.1|WP_012910089.1|1415287_1419106_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MTTQIATRYQLKSRWKITGTLTTTSPMHIGSGDSTTHPQLVNEASETDSTIAHKSIEVAAIVRDFQGKPIIPGSALKGVLRSWAEKRYTNYRPQISKIFGDLDCSTPQARSGRAVFRNAILIPPKDDLITRYKNFVPYWRTDKLAGILSHVCIDRHNGTASANKLFFEEFLPEGISFKVEIFAEQLDESDVQLLLSVLVHGVSDDSEPIQFGSNTANGWGQVSWSDVFVSRNIDNSHVELDLNTLSFRQRCNNLTIDALPAPPPPDHIKTIPLLFQCRGPFLVNDGSRVKRKEMSEAEKERHRNFTPLRRADGSVWLPASSFRGVLRSRAEFILRSLDPSATGDPNKPLSKDNPIEKIFGMTGHASRLQIDEFSSSTTDPKLRHQDFVAIDRFTGGAADTAKFDAEYADHPTFSSRLRLNTHGLSESDIAILAATLRDLTRGDLQFGFGVAKGYGELVGNWTTDAEAWARKQLQHLPVAKRSEIPNSSGPSPSPTKANVIEGKLIFQKIRGEDKPVRRLVYRNKKNEWTTQAPTPIVFASLPQSLQTNTSPEIEVDFEWASPNKPTRVRERGTHLRIAARHNFAANQANDYFAHAYYFLRHEERRNLGGNGKPSAWPNDLADRNPYGHERYQEGCYSGTISVRLTTKTPLLLCDDLTRRETQPGHYEYDMRGDDEGNPILHSSSVRGMLRSAYEAITNSRMGVFTGHDDRLGLRMQTQEGLALVPCRIESGKVVLLPGTSQITVSRPSGPMYAAWLPAYPETGALRLSNTGNLPQHRQHVSCWIELWERTPWVEVRNDINHGRFAEDKKFSYWKVVAIAPHGQHLSKPSSSSECPRIDGTNHHTPKGEPIRFIENGYVCSTNYNFDKKHDERVFFVDNSSELTPIPLSESLVQQWGNLIRNYRLNEDLAKDKKRPGALTKAGWSRHMKDDRELTLADGSLAYARLDAKGSVIELFPVMIARKLYPRSPWCSTPRSLLPATSRSMLSPADRLFGWVNQECVDKDSPAYRSQLRVGVVECKTNEAIRSFNVPMVVPILSQPKPSQGRFYLGDKTGRTQPPGGSKEDRGYSGTNRIRGPKVYPHHAAFSLDRVGKSAGQAGNQNRSITGCVREGVEFKFNLHVLNLSRLEVSALFWLLTLPPSHYLRLGLGKPLGFGSVSCEIVNTETRISDGSDWIASLKEWDALPPGIDATAIQSMAAEYESQIGEVNPTLMQSFLQIAKGFGCVETGYPPSPDSRTLGGEHFKWFAANERNRAGARSLPDPSDNDPLLPKML
>NC_013720.1|WP_012910092.1|1421850_1422843_+|hypothetical-protein
MEYPRRLSFFSNRFADVFHSSGAIDELGSTAALLLWVVSSAEDKTRYHGPVKFWDSDLKQKVGLSSQRRFAAVRKLLVDAGWLVYYRSTQRAIGSYWVVIPQRFQEPIDFEPTAETIEANGAENCANEFENGAQKRANGANGALNGALNGAEKCAPSIPTPTPNTSLSKKESEREREAQPSKAHPPAEAIDLELAQQFFSDLRKLDEHRAEPDFETWAHEFEQLRKAGKPIAQIREVMDFVAGHVKHWRTRIESPQSLRENWDKLALECGAAKKARAATCSEIPDLTDDDVIKPPQHRGRRLYGNRQLPSMAGANYDPDAHLKDPDHGTF
>NC_013720.1|WP_012910093.1|1422887_1423694_+|IS5-family-transposase
MKHTTGKSYPSDVTDAEWEFLLPYLSLMREDVSQRAYSLRDQFNAMRYVVKTGIQWDFLPHEMPPWRAVYQQMRRWFEAGVFEEIAQDLRLMVRLLEGRDEQPTAVIMDARTLQSTPESGGRAGYDGAKKKKGSKANIAVDTLGNLLAVYITAANEQDRDQVAILSQRVQEVTGSNVEIAYVDQGYTGAAAAEQAEASSIRLQVIKHTETKRGFVLLPRRWVVERTFGWLSRFRRLARDYERLTVTLTNFHWLAFLTILLAKIYRQSQ
>NC_013720.1|WP_012910096.1|1424604_1425294_+|hypothetical-protein
MGYLVTAHVLREKPDLSRLGELPKSVGFRVYLHRAANLYLLDTFRPAKVPQYPFQTLLPAADIPLKLPPGLESLERIYSRFGPLNLANGFKKSYINAALLLNRLLQSPVFSFVSNDDDLDFTCSAVGGSLNRLKCRCGDLVISFDGKRAQIAPLVPDEEDEDLLTDTAALKSAMPEVEVLERQTPWDTQLHCIAMEELQAFAGIKEMILGLGSFDPPEDESEWRLVASR
>NC_013720.1|WP_123784678.1|1425311_1426013_+|hypothetical-protein
MHLTAVRLWFHNGSSPAAAGDAERYLANSNMKQRRLDRIANELLGPCLIPKRFVDFTGGFCRAVPSGAIHTILIGHDVRSSHSFQILCGLNATVLCDAQAPQRAGVFGGRQLTRDGWSANSGRWPCHDEDTTRASFVVIQSLIDDLVEPWFQTCASLASVADAMSVNQHGLLKARLYHTAGCTDDAVAAAYQYLERLRSPASWDDPKWLITEIETATIFVREIEFSSQGERAK

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Crispr_ID: NC_013720_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013720_3

1408802-1409837

TypeIII

Consensus_repeat	Method
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	PILER-CR
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CRISPRCasFinder
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CRT

14 spacers

cas2,cas1,cas10,csm4gr5,csm3gr7

The CRISPR arrays of NC_013720_3

>merge|NC_013720|3|1408802-1409837|PILER-CR,CRISPRCasFinder,CRT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACCTCATCGCTGAGCTTCTTCTTCGCGGCGGCCTTTGCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACCAAGAATTCTGCCGAAGTAGTGAGAGTCATCCCAGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACAATTGATGATGTCGAGATAGATTGCAAGTGCGCAATCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACAATGCCGCCGTTCTCGTTACGTTCAAAACTGAAGTCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACACAAGAACCGTACTCCAAACCTTGCCAGTCTTGCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACTTCCGGCCTCCGGCCGGAATCACCGTGGTTTGACGTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGACGTGATCGAGGCAGAGTTAAACGCAGTCCATCCGAGTGTGAGAATGAAGGCCCTTCGGGGCCGATTGAGACGATGAGGCCATTACCTTCTTTTCTTTGCCTTTTAGGTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGACCAGTTCGGTTGCGACGGCGATGGGGTCTTGCCCGAAGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACACCGTCCGCGTTCCATCCCTGTAGGGACAAATCCCCAGCCTCCGTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGACCGTCGCTGGCAACGGTGTTCTCTATCTGATTTTCGGGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACGCAACAGCGACAGAAGTGATGATGAACAGAACAGCAACCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACCGCACGACTTTGCCTTTTTCGTACAGCTTGTTGATTTGCCGTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGACGTTCTGCATGATCCAGAACAGACTGGAGCAGTGGCGGTGTGAGAAAGAGGCCCTTCGGGGCCAATTTGACG

>NC_013720|3|2|1408802-1409766|PILER-CR
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CTCATCGCTGAGCTTCTTCTTCGCGGCGGCCTTTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CAAGAATTCTGCCGAAGTAGTGAGAGTCATCCCA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	AATTGATGATGTCGAGATAGATTGCAAGTGCGCAATC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	AATGCCGCCGTTCTCGTTACGTTCAAAACTGAAGTC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACAAGAACCGTACTCCAAACCTTGCCAGTCTTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TTCCGGCCTCCGGCCGGAATCACCGTGGTTTGAC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	GTGATCGAGGCAGAGTTAAACGCAGTCCATCCGAGTGTGAGAATGA
AGGCCCTTCGGGGCCGATTGAGACGATGAGGCCAT	TACCTTCTTTTCTTTGCCTTTTAGGTGTGAGAATG
AGGCCCTTCGGGGCCGATTGAGACCAGTTCGGTTG	CGACGGCGATGGGGTCTTGCCCGAAGTGTGAGAAAG
AGGCCCTTCGGGGCCGATTGAGACACCGTCCGCGT	TCCATCCCTGTAGGGACAAATCCCCAGCCTCCGTGTGAGAATG
AGGCCCTTCGGGGCCGATTGAGACCGTCGCTGGCA	ACGGTGTTCTCTATCTGATTTTCGGGTGTGAGAAAG
AGGCCCTTCGGGGCCGATTGAGACGCAACAGCGAC	AGAAGTGATGATGAACAGAACAGCAACCGTGTGAGAAAG
AGGCCCTTCGGGGCCGATTGAGACCGCACGACTTT	GCCTTTTTCGTACAGCTTGTTGATTTGCCGTGTGAGAAAG
AGGCCCTTCGGGGCCGATTGAGAC

>NC_013720|3|3|1408802-1409837|CRISPRCasFinder
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CTCATCGCTGAGCTTCTTCTTCGCGGCGGCCTTTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CAAGAATTCTGCCGAAGTAGTGAGAGTCATCCCA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	AATTGATGATGTCGAGATAGATTGCAAGTGCGCAATC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	AATGCCGCCGTTCTCGTTACGTTCAAAACTGAAGTC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACAAGAACCGTACTCCAAACCTTGCCAGTCTTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TTCCGGCCTCCGGCCGGAATCACCGTGGTTTGAC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	GTGATCGAGGCAGAGTTAAACGCAGTCCATCCGAG
TGTGAGAATGAAGGCCCTTCGGGGCCGATTGAGAC	GATGAGGCCATTACCTTCTTTTCTTTGCCTTTTAG
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	CAGTTCGGTTGCGACGGCGATGGGGTCTTGCCCGAA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACCGTCCGCGTTCCATCCCTGTAGGGACAAATCCCCAGCCTCC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	CGTCGCTGGCAACGGTGTTCTCTATCTGATTTTCGG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GCAACAGCGACAGAAGTGATGATGAACAGAACAGCAACC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CGCACGACTTTGCCTTTTTCGTACAGCTTGTTGATTTGCC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GTTCTGCATGATCCAGAACAGACTGGAGCAGTGGCG
GTGTGAGAAAGAGGCCCTTCGGGGCCAATTTGACG

>NC_013720|3|2|1408802-1409837|CRT
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CTCATCGCTGAGCTTCTTCTTCGCGGCGGCCTTTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CAAGAATTCTGCCGAAGTAGTGAGAGTCATCCCA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	AATTGATGATGTCGAGATAGATTGCAAGTGCGCAATC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	AATGCCGCCGTTCTCGTTACGTTCAAAACTGAAGTC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACAAGAACCGTACTCCAAACCTTGCCAGTCTTGC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	TTCCGGCCTCCGGCCGGAATCACCGTGGTTTGAC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	GTGATCGAGGCAGAGTTAAACGCAGTCCATCCGAG
TGTGAGAATGAAGGCCCTTCGGGGCCGATTGAGAC	GATGAGGCCATTACCTTCTTTTCTTTGCCTTTTAG
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	CAGTTCGGTTGCGACGGCGATGGGGTCTTGCCCGAA
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	ACCGTCCGCGTTCCATCCCTGTAGGGACAAATCCCCAGCCTCC
GTGTGAGAATGAGGCCCTTCGGGGCCGATTGAGAC	CGTCGCTGGCAACGGTGTTCTCTATCTGATTTTCGG
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GCAACAGCGACAGAAGTGATGATGAACAGAACAGCAACC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	CGCACGACTTTGCCTTTTTCGTACAGCTTGTTGATTTGCC
GTGTGAGAAAGAGGCCCTTCGGGGCCGATTGAGAC	GTTCTGCATGATCCAGAACAGACTGGAGCAGTGGCG
GTGTGAGAAAGAGGCCCTTCGGGGCCAATTTGACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013720.1\|WP_012910082.1\|1399579_1402642_+\|HsdR-family-type-I-site-specific-deoxyribonuclease	unknown	unknown	gnl\|CDD\|273028
NC_013720.1\|WP_012910087.1\|1411809_1413309_+\|hypothetical-protein	cas10	cls000707_cas10_CAS-III	gnl\|CDD\|224272
NC_013720.1\|WP_044181114.1\|1399129_1399573_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910076.1\|1392260_1392503_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_013720.1\|WP_012910089.1\|1415287_1419106_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_013720.1\|WP_012910085.1\|1407931_1408204_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_013720.1\|WP_012910083.1\|1402641_1403358_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NC_013720.1\|WP_012910075.1\|1390514_1391981_-\|DUF3987-domain-containing-protein	unknown	unknown	gnl\|CDD\|379041
NC_013720.1\|WP_012910080.1\|1397755_1399021_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341199
NC_013720.1\|WP_012910088.1\|1413305_1415291_+\|hypothetical-protein	csm4gr5	cls000259_csm4gr5_CAS-III-D	gnl\|CDD\|187857
NC_013720.1\|WP_012910092.1\|1421850_1422843_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910093.1\|1422887_1423694_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_013720.1\|WP_123784678.1\|1425311_1426013_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910100.1\|1427222_1427519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|165262
NC_013720.1\|WP_012910078.1\|1393323_1394208_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198394
NC_013720.1\|WP_012910084.1\|1405106_1407935_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|238828
NC_013720.1\|WP_012910086.1\|1410067_1411780_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012910096.1\|1424604_1425294_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_044181111.1\|1395362_1397765_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|223363
NC_013720.1\|WP_044181123.1\|1426555_1427116_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013720.1\|WP_012910082.1\|1399579_1402642_+\|HsdR-family-type-I-site-specific-deoxyribonuclease	gnl\|CDD\|273028	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family. This gene is part of the type I restriction and modification system which is composed of three polypeptides R (restriction endonuclease), M (modification) and S (specificity). This group of enzymes recognize specific short DNA sequences and have an absolute requirement for ATP (or dATP) and S-adenosyl-L-methionine. They also catalyse the reactions of EC 2.1.1.72 and EC 2.1.1.73, with similar site specificity.(J. Mol. Biol. 271 (3), 342-348 (1997)). Members of this family are assumed to differ from each other in DNA site specificity. [DNA metabolism, Restriction/modification].	1.7284e-140
NC_013720.1\|WP_012910087.1\|1411809_1413309_+\|hypothetical-protein	gnl\|CDD\|224272	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms].	0.00132765
NC_013720.1\|WP_012910076.1\|1392260_1392503_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.33982e-10
NC_013720.1\|WP_012910089.1\|1415287_1419106_+\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.3236e-73
NC_013720.1\|WP_012910085.1\|1407931_1408204_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.53617e-15
NC_013720.1\|WP_012910083.1\|1402641_1403358_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	1.24653e-53
NC_013720.1\|WP_012910075.1\|1390514_1391981_-\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.40337e-73
NC_013720.1\|WP_012910080.1\|1397755_1399021_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341199	cd17518, RMtype1_S_Asp27244ORF1181P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Acinetobacter sp. S subunit (S.Asp27244ORF1181P) TRD1-CR1. The recognition sequence of Acinetobacter sp. S subunit (S.Asp27244ORF1181P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.0651e-66
NC_013720.1\|WP_012910088.1\|1413305_1415291_+\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	6.80824e-07
NC_013720.1\|WP_012910093.1\|1422887_1423694_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.37403e-23
NC_013720.1\|WP_012910100.1\|1427222_1427519_+\|hypothetical-protein	gnl\|CDD\|165262	PHA02953, PHA02953, IEV and EEV membrane glycoprotein; Provisional.	0.00191873
NC_013720.1\|WP_012910084.1\|1405106_1407935_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|238828	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).	1.69712e-59
NC_013720.1\|WP_012910078.1\|1393323_1394208_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198394	cd10447, GIY-YIG_unchar_2, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria and archaea. The family includes a group of uncharacterized hypothetical proteins, mainly found in bacteria and a few found in archaea, with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	1.2122e-37
NC_013720.1\|WP_044181111.1\|1395362_1397765_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	9.67188e-128

>NC_013720.1|WP_012910085.1|1407931_1408204_+|CRISPR-associated-endonuclease-Cas2
MSLYLASYDISDDKRRAKVARFLLQFGARLQKSVFEIDLDPDEIAEFRRDVGSILSQKDLFVLVPVDERGSRSTLSWQRELRRMDAVIVL
>NC_013720.1|WP_012910084.1|1405106_1407935_+|CRISPR-associated-endonuclease-Cas1
MQIFRVRVLLRIKTATRMHAHHAAILYALLCEAHAAAHQIDPCIPDGLLLDAPEQARLMLAAGSKYAFGFTLLAPTERQACTVVDHLVRGLRKVGRAKTKPKPALGGNFEVELVEDLVAKQTHRTGHPLQPIAIEAITQEIAALEGLVQLTLQFHSPLRAHRPKKARRDGHQFFDDHYFHPQALLHRLQSRIESLGICPAPFQPHLRPQAAAPLDGWPEPASPLPEDAAEPISHSPIPAVVSNELVWLDVSYGPRHSRKTLGGAVGSVKLDGLQPATIATLVWGQYVRIGEGTRFGFGAYRIAELASDPYVCERSTRLLDLATEHPALDQAASKWDLGGGEVQSAARDLVKGTYQPQPCFRLDIPKSNGDRRQLAIPSRLDRVLQRSILDVIAPALELFFEESSFAYRRGLGRHTAARHLSQAFTDGYRWALHADFFDFFDTIDHKLLRRRLAAYLADPSLVEVIMRWVETGAPHPDHGIPTGAPLSPILANLFLDQFDEAMHSVGRRLVRYADDFVVLFRDQSEAQAVISEVRQAAESLRLELNRDKTHTLHLATSFDFLGLHFEPREIWEVTTIDEPQLIEQLGWKERSRKPSGGVLHPLPGESQLATPLPGTLIAGPGIEEILVHGDVLQFKHQDQRGIESIPLHTLREVVVLGAVSLSHRVLSAIQQNAISLLLLDESANRTAYIDCQNAEPDSAGIEAQVDLIRNPESSLAIARQLISAKLHNYATLADAYPPKSHSGNAHRSLMRLAKDAQQASSLPELLGIEGSGAALWYGEIGMRLSPGFHWERRVAPNAHDPVNILLNLAQTVLYRMTQHAIAQAKLVDTLGFLHQPRAGHAALASDMQEPFRHLMDRAVLETVRRIRPEEFEPDERGPFPVRMKPRALRESLAWIHRILALPCNGAGQSSPTAYRLQIFKQVRSFRRFLMDPGGRFEPFRHP
>NC_013720.1|WP_012910083.1|1402641_1403358_+|M48-family-metallopeptidase
MSEVLQLGDLAIELIQKDIKNVHLSVHPPHGRVRIAVPKNMTRERVRVFAISKLAWIRQQQKKLREQARESRREYSERESHYVWGKRYLLTILEKNEPPKIELLHRKLRMTVRPVTDEVQRAALLEGWYRELIRQRAPDFIERWQKQLGVEHSKFFVRRMKTRWGSCNPVRRTIRLNTDLAKKPIECLEYVIVHELMHLLEPTHNARFVRLMNHHFPSWQQCRNLLNRLPVRHEDWRV
>NC_013720.1|WP_012910082.1|1399579_1402642_+|HsdR-family-type-I-site-specific-deoxyribonuclease
MSTIGAPERETQSRVIQLFCQELGYDYLGDFRDRDGNSNVETTLLEKWLAARGYSPAQISAAIYRLTSEAHHPNRKLMASNKAVYSLLRYGVPVKVEVGSPTETVHLIDWSHPEQNHFAIAEEVTLQGDHDRRPDLVMYVNGIAIGVIELKSSIASIGEGIRQLLSNQQTQFHAWFFSTVQLVLAGSNSEGLQYGTIGTEEKYFLKWKEDETDNSRFKLDKYLLKICRKDRLIELLLDFVLFDGGVKKLPRVHQYFGIKAAQEHVRQKKGGIIWHTQGSGKSIVMVLLAKWILENYPQARVAIITDRDELDKQIEGVLRDAGAIGENDQVRATSGSDLMVKLAQPTPRLICSLVHKFGRKKVDNFEKFIEELEAQPSPAVGELFVFVDECHRTQSGKLHRVMKALLPTATFIGFTGTPLLKDDKATSLEIFGGYIHTYKFSEAVEDKVVLDLIYEARDIDQRLSSPEKIDEWFEAKTRGLNDWQKNELKTTWGTMQNLLSSKSRMNRVVADILHDFSCRPRLKSERGNAILVASSIYEACKYYKLFQETPLKGKCAIITSYNPQAKDITKEEVGANTETDKQFVYNTYTDLLTDVAPNPKQSKTETYEENAKHLFVEEPANMKLLVVVDKLLTGFDAPSCSYLYIDKSMQDHGLFQAICRTNRLDDDSKDFGYIVDYKNLFKSVQKAIKVYTSEIDKTSGGSDPEVLMHDRLTKGKERLDNAIEAIELLCEPVDPPKAELEHIRYFCGNTEVPTDLKEREPMRVALYKATVALLRAYGSIADELEEAGYSAGEVKRIKKRLDHFVNMREIVRKASGETLDLKPYESDMRHLIDSYIDASEPRKISPFDNMGLLELIVKTGIAEAIANQLGGMKGNQDAIAETIENNVRSKIITDRNNDPAFYDRMSTLLDEIVAARKAKAIKYEDFLKKVAELAKMVHEGKDAELSAKLNTPGKRALYNNLANDEATALKIDETVKAVRPDDWRGVQAREKIIKAALYGVLQDSEQVEKVFEIVKAQKEY
>NC_013720.1|WP_044181114.1|1399129_1399573_+|hypothetical-protein
MEPLELEKVIAFVADRIARKIAYKVMLDLRKMPCTMSGDDSGLSNVWEEICVQVQYEESHCWDIYEQMIRDLVESYVDELPIELYNAVWLQTDPGFDWLYASPETRNPSPAESTSASKWVYDFVISRADSWSNKAVRRYLRRASERD
>NC_013720.1|WP_012910080.1|1397755_1399021_+|restriction-endonuclease-subunit-S
MAVKPGFKMTEIGEIPAEWNAYHLSQLWKVTDCKHVTATFVPEGYPVASIREVQSKFVNLHAANHTTPHFYRLLIEGGRDPQAGDLILSRNATVGQIAQVSHSHPKFAMGQDVCLLRKTSPTNSTEFIQAVFQSRIIKQQISDILVGSTFKRINVKQIKAFIVPSPSAAEQRAIAGALSDVDALIESLEQLIAKKRAIKQGAMQELLTGKRRLPGFSGKWEKKRLQQIAWYQEGPGVQKHQFASVGTKLLNGSNISHGELFLDQTERYIEDQLANGTYRHFLCDAGDIVIASSGISPATLNEKMAIVQASHLPLCMNTSTIRFKANQDLATQAFLFVCLQGNSFRDQIAGMATGSAQLNFGPSHLNKVELLLPTISEQVAVADVIGSLEHELRKLDDRLTKLRLLKQAMMQQLLTGKIRLV
>NC_013720.1|WP_044181111.1|1395362_1397765_+|type-I-restriction-modification-system-subunit-M
MALKKSSLYSSLWSSCDELRGGMDASQYKDYVLVLLFLKYISDKYANVPYAPIEVPKGSSFKDMVALKGTKDIGDDINKKIIAPIAQANRLSDMPDFNDSTKLGSGKEKVDRLTNLIAIFENKSLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQIIGIKTAKTTGSTTVYDPTCGSGSLLLKVSDEAQTPVTLYGQEKDAATSGLARMNTILHNMPTALIEQGNTLSNPRFVDGSSLKTFDYVVANPPFSDKRWSTGLDPASDPHARFTLGIPPAKQGDYAYLLHIIRSLKSTGQGACILPHGVLFRGNAEAEIRKNLLRKGYIKGIIGLPANLFYGTGIPACIVVIDKKEANRRQAIFMIDASSGYMKDGPKNRLRARDIHKIVDTFNQQLEVPKYSRLVTIEEIEKNDFNLNLPRYIDSQTPEDIQNIDGHLKGGIPVEDTTSLEPYWKVCPGLQKALFKKNRTGFVDLRVEPAEIKTTIYQHPEFTQFITQMNQHFDTWRQKAAKTLKALDAGHHPKQLIAKLADGLLEHYQASPLIDPYAVYQHLMDYWETTMQDDCYSIAADGWKAEPQRLVEQTKAGKTKDRGWACDLVPKSLVVARYFAKQQAEIDSLAAMLEAASAAIAEMEEEHGGEEGLFAALEKISLASVKARMKEIVAEGDTLSREEFELLEKYCALVQGETTLRRDLATKTDELDQLALEHYAKLTPAEIKTLVVDDKWLATLAAAVQGEMDRISQSLTSRVKELAERYREPLPQLTLRCQQLEAQVNTHLERMGFSWQ
>NC_013720.1|WP_012910078.1|1393323_1394208_+|GIY-YIG-nuclease-family-protein
MPKFQQRPFSITIFVPDGDPDSLRLVEKSNWTGIGVVFNRTNYKQVVLQEEFERTGVYVLVGDSETSGLPTIYIGEGDPVKYRLNSHYSQKDFWDWAVFFVTKDSSLNKAHVQYLEARLIELARAAKQCKLANNQSPAAPSLSKAQTADVESFLADMLSIFPLVGLGVFEATESSPKAQQQMFYIASKGIKASGYEDPKGFVVLKGSQVMKTEAPSIGPYLKALRTDLLDGGVIALSGEYYVLTQDYVFTSPSTASSVVQGRRSNGRADWKTKDGVTLREIQESAAGLVENSGE
>NC_013720.1|WP_012910076.1|1392260_1392503_-|helix-turn-helix-domain-containing-protein
MSKDAGLVAGKSGEKLALRSKEAAKALGISEKTLSKWTKENKIPHLRVNGIVLYPIEALSKWLESSMAQGTTEQVVSSKF
>NC_013720.1|WP_012910075.1|1390514_1391981_-|DUF3987-domain-containing-protein
MSKVLPGEFTPFPLDGFPVSIQKALWNASKSIDCDVSFLGLPVLTAVAGVVGNRVMIECKPGFRTVPTLWSMIVGRSGSAKSPAIDFVMKWLRKRESTALYNRIRTAVAAKSQSPPKKPKKGEEAAPLPPVELPPPIPMNLDCERLLLDDITIETVYDEHAKSPSGLLLVHDEGHKFFAGMNRYAKSGGGSLDESKWLQLYDGRYAAIDRKTGNPRSVMIKQANVSITAGIQPKMLSLAVKPEYFGSGLVPRFLFAFPPARVRRSNDIPIEVDSVQAIEHLFRRLMDIRGKLADAPESLIVTLPEDVRRRYYEFTDELRESDPTDEDDMSACITKMECAVLRLALILHLVKWASAPGKSNPSTELSIEELDNAIELARWFKVQAERVYAYIAGNRSMDNDQKLLNMISKREHGMTAREVQQNASWLKNIEDTEKALHRLYEAKNLDKVLRTPRQGPVTTIYVATSATKDEGTAEIDGKCEYKSSDPPF
>NC_013720.1|WP_012910086.1|1410067_1411780_+|hypothetical-protein
MSQPASPATEIPVELFRQILIWPLLIHAPHGESAMELMDLVTDELERHSWHWNDRSAGQSASPLKGLPWYQDDHDYSEIVYFHSYVRDFLYGGDGTPASERPLRVLRRTDIASLLLKVDEGREYRLKVERVEAYLFDSGILQVVVEVAAPQLVSKSPTDSEQLRPFMLSDALDLQNVLRMAFPRRWKPKTGIPSETPHRACWLNSEGSEIAGSVQDFLNQEDFTRIVREQAELPAAKHWQYLVQPLPLFERRVCTGLSVKQIEDQRLPSMSYIAVPDPRLISDGDFERIAFFDSAGQSSVGSYSDEFLVGWEKDHAYDRFWQRLPSEGGPEVALHNQMMRTRWLCSGYGFAVVGASGDKFFTTQIAANFRHHYFRMGLIAHFHRAKLISLRDQLAEATKQVGENFRNRVMEIQRSATIFRARFWFHEVSTQLQGREIFTWWSNRLGNPSLFEHVISDIEAAESQVRTEFEAEESQDINLITRVGGAIGILSIVLSIVALIISLLALEAISPLKQFAIMPANPWDWTVANLWLGRIASIACPLSIVSLWILLVVYGGLRYYKSHRRTRRLR
>NC_013720.1|WP_012910087.1|1411809_1413309_+|hypothetical-protein
MTVFVMPSFLLRLEAVNFSESCYDTCDISTIRGGSMMLSNAHELARVVLPQEIQHEPTSFGASHAIWQFEAADANAAEKVRNDTLHALAKHKQLRHATFVCAVVANDDGSADALHRLRMHNHWRQYQEPTVVPPDLPDAKRQGKRICELDHVRPATMEIRKGNDSYWVSTSTYDRRVYGRKQKRMFYKELCGSDLAVVHDLSDLTSHLESSQHRLHGKMALIYIDGNQQSEMAADLSLDRLSKFRQYVREQHRRFLTTLLEEIVQLMPAQGSSNEWFHWDSEQNELQVRLETLLWGGDDIVLVVPAWKGWYVARKFYEAAQGWEFGGQKFTHATGLIYCSHKAPIQDMRRYAEDLVVQCKKTKNSEGNYQDLMGYEVLESIDVISSDLDRWRSARLGESEKSGAEAIASALLLSPAQMDGIESMIRSIRVGVDDPDSILSRRQIERRARRMQHSMIGDEQFDSDVTNYFAGSEFEKIGLGPHSLRAKLFHLTAMWDYLT
>NC_013720.1|WP_012910088.1|1413305_1415291_+|hypothetical-protein
MIHVELEIKLTLVGPVLTQATSAGRLGLDAVMARTSAGHPFLPYSLVRGKLRQALEEVSSPLQSEDQRNVEQLLPIWFGPRSSSKEAEQERGALCFSDFICPEPKDDLATQTRIRIDRDTGAAEDKMMMVFDSPFKVGEEAPFIGRIWCICGSVGQAESTIKYVLAGLRWVRQFGAEKTIGFGCVSNVDLLKATVTDLAPHSQATRNTITQKLSNLLAKTGSKVIHRSRKPNAPEDGGHGTRFLLRIQPQGPICIGGRRRNANVFESEEVIPGGVLVGTLATMWRQANNKPPSDFVVQPSGGKWDTLAEHFERLVFSHAFPSKRGSGIRPCAIPMSLVSAEPRHGDIPDSLFDVALCSRPRLIPAIGSNLLRPPVFQSDWKSHVVGSKAKAIFGWSSVPRELRVRTAIDIETLRASDEQLFAYEMVVPDQHEWLGYLDLENVPPQDRAMLLEELESLLSAGLCPIGKTKIDASISIEPYTAATPMLPSSSTPLPGNVWVITLQTPAILCASTDLEDPTGEQLFDGYRKAWKTLSDESLELQRFFARQSLSAPRFAGRLPTNSSGQFYPFVVTDAGSTFVLRATGDVRDAQLKVKEWLNLGMPLCDYLLGGSQADKADRDWQRSPYLNRHGYGEVAVNQPWLLGHDSSVVMPQRLDDEEGTI
>NC_013720.1|WP_012910089.1|1415287_1419106_+|TIGR03986-family-CRISPR-associated-RAMP-protein
MTTQIATRYQLKSRWKITGTLTTTSPMHIGSGDSTTHPQLVNEASETDSTIAHKSIEVAAIVRDFQGKPIIPGSALKGVLRSWAEKRYTNYRPQISKIFGDLDCSTPQARSGRAVFRNAILIPPKDDLITRYKNFVPYWRTDKLAGILSHVCIDRHNGTASANKLFFEEFLPEGISFKVEIFAEQLDESDVQLLLSVLVHGVSDDSEPIQFGSNTANGWGQVSWSDVFVSRNIDNSHVELDLNTLSFRQRCNNLTIDALPAPPPPDHIKTIPLLFQCRGPFLVNDGSRVKRKEMSEAEKERHRNFTPLRRADGSVWLPASSFRGVLRSRAEFILRSLDPSATGDPNKPLSKDNPIEKIFGMTGHASRLQIDEFSSSTTDPKLRHQDFVAIDRFTGGAADTAKFDAEYADHPTFSSRLRLNTHGLSESDIAILAATLRDLTRGDLQFGFGVAKGYGELVGNWTTDAEAWARKQLQHLPVAKRSEIPNSSGPSPSPTKANVIEGKLIFQKIRGEDKPVRRLVYRNKKNEWTTQAPTPIVFASLPQSLQTNTSPEIEVDFEWASPNKPTRVRERGTHLRIAARHNFAANQANDYFAHAYYFLRHEERRNLGGNGKPSAWPNDLADRNPYGHERYQEGCYSGTISVRLTTKTPLLLCDDLTRRETQPGHYEYDMRGDDEGNPILHSSSVRGMLRSAYEAITNSRMGVFTGHDDRLGLRMQTQEGLALVPCRIESGKVVLLPGTSQITVSRPSGPMYAAWLPAYPETGALRLSNTGNLPQHRQHVSCWIELWERTPWVEVRNDINHGRFAEDKKFSYWKVVAIAPHGQHLSKPSSSSECPRIDGTNHHTPKGEPIRFIENGYVCSTNYNFDKKHDERVFFVDNSSELTPIPLSESLVQQWGNLIRNYRLNEDLAKDKKRPGALTKAGWSRHMKDDRELTLADGSLAYARLDAKGSVIELFPVMIARKLYPRSPWCSTPRSLLPATSRSMLSPADRLFGWVNQECVDKDSPAYRSQLRVGVVECKTNEAIRSFNVPMVVPILSQPKPSQGRFYLGDKTGRTQPPGGSKEDRGYSGTNRIRGPKVYPHHAAFSLDRVGKSAGQAGNQNRSITGCVREGVEFKFNLHVLNLSRLEVSALFWLLTLPPSHYLRLGLGKPLGFGSVSCEIVNTETRISDGSDWIASLKEWDALPPGIDATAIQSMAAEYESQIGEVNPTLMQSFLQIAKGFGCVETGYPPSPDSRTLGGEHFKWFAANERNRAGARSLPDPSDNDPLLPKML
>NC_013720.1|WP_012910092.1|1421850_1422843_+|hypothetical-protein
MEYPRRLSFFSNRFADVFHSSGAIDELGSTAALLLWVVSSAEDKTRYHGPVKFWDSDLKQKVGLSSQRRFAAVRKLLVDAGWLVYYRSTQRAIGSYWVVIPQRFQEPIDFEPTAETIEANGAENCANEFENGAQKRANGANGALNGALNGAEKCAPSIPTPTPNTSLSKKESEREREAQPSKAHPPAEAIDLELAQQFFSDLRKLDEHRAEPDFETWAHEFEQLRKAGKPIAQIREVMDFVAGHVKHWRTRIESPQSLRENWDKLALECGAAKKARAATCSEIPDLTDDDVIKPPQHRGRRLYGNRQLPSMAGANYDPDAHLKDPDHGTF
>NC_013720.1|WP_012910093.1|1422887_1423694_+|IS5-family-transposase
MKHTTGKSYPSDVTDAEWEFLLPYLSLMREDVSQRAYSLRDQFNAMRYVVKTGIQWDFLPHEMPPWRAVYQQMRRWFEAGVFEEIAQDLRLMVRLLEGRDEQPTAVIMDARTLQSTPESGGRAGYDGAKKKKGSKANIAVDTLGNLLAVYITAANEQDRDQVAILSQRVQEVTGSNVEIAYVDQGYTGAAAAEQAEASSIRLQVIKHTETKRGFVLLPRRWVVERTFGWLSRFRRLARDYERLTVTLTNFHWLAFLTILLAKIYRQSQ
>NC_013720.1|WP_012910096.1|1424604_1425294_+|hypothetical-protein
MGYLVTAHVLREKPDLSRLGELPKSVGFRVYLHRAANLYLLDTFRPAKVPQYPFQTLLPAADIPLKLPPGLESLERIYSRFGPLNLANGFKKSYINAALLLNRLLQSPVFSFVSNDDDLDFTCSAVGGSLNRLKCRCGDLVISFDGKRAQIAPLVPDEEDEDLLTDTAALKSAMPEVEVLERQTPWDTQLHCIAMEELQAFAGIKEMILGLGSFDPPEDESEWRLVASR
>NC_013720.1|WP_123784678.1|1425311_1426013_+|hypothetical-protein
MHLTAVRLWFHNGSSPAAAGDAERYLANSNMKQRRLDRIANELLGPCLIPKRFVDFTGGFCRAVPSGAIHTILIGHDVRSSHSFQILCGLNATVLCDAQAPQRAGVFGGRQLTRDGWSANSGRWPCHDEDTTRASFVVIQSLIDDLVEPWFQTCASLASVADAMSVNQHGLLKARLYHTAGCTDDAVAAAYQYLERLRSPASWDDPKWLITEIETATIFVREIEFSSQGERAK
>NC_013720.1|WP_044181123.1|1426555_1427116_+|hypothetical-protein
MLQQIAGHVDYSGFIAHSAQPLLSFIVLSLKLWYSDQASRAFSNLTNVAHCLSIRLPTSDGWFTRVAASQDWRVASIAAAGITPNFHFAKLESPHRSIFILGHSNYPIVAFAKQVNAVDQRLQFVDESEISSEISRLFPDVAIAIAADLNRSITEDDLAQLAPIELRQVKYWKPCTIGQLAFNWWD
>NC_013720.1|WP_012910100.1|1427222_1427519_+|hypothetical-protein
METVPTIDRDKLINDLRSRLPSAAISIETISLDYGSWEIAVKQNGRWVNIAWGPLSGFGTTDLDNLREDSNPFGSHDWPMENAEAAIEFVVRVVGPCQ

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Crispr_ID: NC_013720_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013720_4

2420487-2420616

Orphan

Consensus_repeat	Method
TGCTGCAAGCCAGTTTGCTGCAAGCCAGCTTGCGAACCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013720_4

>merge|NC_013720|4|2420487-2420616|CRISPRCasFinder
TGCTGCAAGCCAAAGTGCTGCAAGCCAGTTTGCTGCAAGCCAGCTTGCGAACCAAAGTGCTGCAAGCAACGCTGCTGCCGTCAGCCACGCTGCTGCAAGCCAGTTTGCTGCAAGCCAGCTTGCGAACCAA

>NC_013720|4|4|2420487-2420616|CRISPRCasFinder
TGCTGCAAGCCAAAGTGCTGCAAGCCAGTTTGCTGCAAGC	CAGCTTGCGAACCAAAGTGCTGCAAGCAACGCTGCTGCCGTCAGCCACGC
TGCTGCAAGCCAGTTTGCTGCAAGCCAGCTTGCGAACCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013720.1\|WP_012910835.1\|2415094_2415343_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NC_013720.1\|WP_012910836.1\|2415590_2416790_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|274271
NC_013720.1\|WP_012910851.1\|2434767_2436000_-\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|235772
NC_013720.1\|WP_123784921.1\|2429413_2430634_+\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NC_013720.1\|WP_012910847.1\|2428565_2429174_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374318
NC_013720.1\|WP_123784714.1\|2433656_2434580_-\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_052303616.1\|2416786_2417584_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|367441
NC_013720.1\|WP_012910846.1\|2425471_2428543_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377970
NC_013720.1\|WP_052303617.1\|2424070_2424535_-\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_081441443.1\|2412866_2413382_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_013720.1\|WP_012910842.1\|2421228_2422659_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|225723
NC_013720.1\|WP_012910849.1\|2430661_2433421_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|240291
NC_013720.1\|WP_012910832.1\|2403399_2412870_-\|vault-protein-inter-alpha-trypsin	unknown	unknown	gnl\|CDD\|274782
NC_013720.1\|WP_044181471.1\|2422682_2423777_-\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NC_013720.1\|WP_123784920.1\|2402140_2403259_+\|D-TA-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143495
NC_013720.1\|WP_012910839.1\|2419264_2419594_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|366732
NC_013720.1\|WP_123784713.1\|2413882_2414884_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_044181465.1\|2417737_2419132_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|376298
NC_013720.1\|WP_012910830.1\|2400944_2402105_+\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NC_013720.1\|WP_012910841.1\|2420815_2421232_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274364

Protein	Function_ID	Function_description	E-value
NC_013720.1\|WP_012910835.1\|2415094_2415343_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.19037e-41
NC_013720.1\|WP_012910836.1\|2415590_2416790_+\|GTPase-ObgE	gnl\|CDD\|274271	TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. [Protein synthesis, Other].	0
NC_013720.1\|WP_123784921.1\|2429413_2430634_+\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	5.01723e-131
NC_013720.1\|WP_012910847.1\|2428565_2429174_-\|hypothetical-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	3.1446e-37
NC_013720.1\|WP_052303616.1\|2416786_2417584_+\|type-III-pantothenate-kinase	gnl\|CDD\|367441	pfam03309, Pan_kinase, Type III pantothenate kinase. Type III pantothenate kinase catalyzes the phosphorylation of pantothenate (Pan), the first step in the universal pathway of CoA biosynthesis.	7.71733e-39
NC_013720.1\|WP_012910846.1\|2425471_2428543_+\|hypothetical-protein	gnl\|CDD\|377970	pfam08305, NPCBM, NPCBM/NEW2 domain. This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain (Naumoff DG. Phylogenetic analysis of alpha-galactosidases of the GH27 family. Molecular Biology (Engl Transl). (2004)38:388-399.).	1.65003e-10
NC_013720.1\|WP_012910851.1\|2434767_2436000_-\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|235772	PRK06290, PRK06290, LL-diaminopimelate aminotransferase.	0
NC_013720.1\|WP_081441443.1\|2412866_2413382_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	4.47855e-22
NC_013720.1\|WP_012910842.1\|2421228_2422659_-\|PepSY-domain-containing-protein	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	1.37959e-85
NC_013720.1\|WP_012910849.1\|2430661_2433421_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	2.93241e-07
NC_013720.1\|WP_012910832.1\|2403399_2412870_-\|vault-protein-inter-alpha-trypsin	gnl\|CDD\|274782	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).	3.75698e-47
NC_013720.1\|WP_123784920.1\|2402140_2403259_+\|D-TA-family-PLP-dependent-enzyme	gnl\|CDD\|143495	cd06821, PLPDE_III_D-TA, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exhibit full catalytic activity.	1.21001e-155
NC_013720.1\|WP_012910839.1\|2419264_2419594_-\|Hpt-domain-containing-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	3.43926e-13
NC_013720.1\|WP_044181471.1\|2422682_2423777_-\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	1.05857e-47
NC_013720.1\|WP_044181465.1\|2417737_2419132_+\|phosphoglycerate-kinase	gnl\|CDD\|376298	pfam00162, PGK, Phosphoglycerate kinase.	8.86992e-65
NC_013720.1\|WP_012910830.1\|2400944_2402105_+\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	2.10943e-160
NC_013720.1\|WP_012910841.1\|2420815_2421232_-\|hypothetical-protein	gnl\|CDD\|274364	TIGR02962, Probable_5-hydroxyisourate_hydrolase_R09H10.3, hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0.00780687

>NC_013720.1|WP_012910839.1|2419264_2419594_-|Hpt-domain-containing-protein
MTALTMGPLLYSSLGDDPDLAEIVEMFVEELPRRIEGIVAATQQRNWAEVGRLAHQIKGAGGSHGFDQMTKPAAIVEDLARHGSDDASLESAVATLVDICSRVRSGVPQ
>NC_013720.1|WP_044181465.1|2417737_2419132_+|phosphoglycerate-kinase
MPLAASKTLSLIKVLKGIAPREELSLAEYLGSIPKLDSLSSLPSGTPVLVRGDVDAKVGAELGEGDIRLRSMKSTLEFGVKKGFKQVIFGHLGRKQKDKPIGSLAKVAARIGKILGTEVALITDWLDEATFTIKPAVEEQIAAAAPGSVLVLENVRAYDIETVLWKAKDDALAPIAENLTTLANSFAERVAKVYVNEALSAGSLDASSTIIPLAMEKVALGNYIASEFEGPMMDCMKAKMVIFSGIKIDKLDDLDAMIQRGTISTIISAGSLAMALKKADAQLSGGDFCLGVTEDPAHSDKPYYIPPDRIEQAKRMIAAGKAQGIEFVLPVDFKLADESVVTTMKPGDQQFDIGPGTIAHFQERIGQFIAAQGGKPVGVFHNGVFGMFEDPRFEAGTKAFIAELNRMTKAGLKVYVGGGEGGTALERYGQPDWVTHCFTAGGTVLNALGSEPVPYLVALRAAAN
>NC_013720.1|WP_052303616.1|2416786_2417584_+|type-III-pantothenate-kinase
MSGGAMLAAVDIGNSSTKIGLLELPVAAGVDGSMLPRQLLDFPTGQPLPAAVAERLLSISAPLRWEIASVNRGGTATVEAWVHEHRPQDTLRVLTRHDLPIALLVDQPERVGLDRMLVAVVANRLRSPSRPAVVICAGTAVTMNVVNRQGEFLGGAILPGFQMQSRSLRGGTDQLPLTEVIHEQLPPPAIGRNTEEAIRSGLYWGMVGAVQQLVAETERTLGEAPELFVTGGDLDRLAALSLEQARFLPSMVLQGIASLHLPAGH
>NC_013720.1|WP_012910836.1|2415590_2416790_+|GTPase-ObgE
MFVDRVTIEVQGGRGGDGCVSFRREKYVPKGGPDGGDGGDGGSVIIVAKYGVNNLASMAHHKFWRAPSGNHGSGSGRYGKAAEDLIIEVPPGTIISDAAAGYVIKDLANDGDTLIAAKGGGGGRGNLRFKTPTNRAPREATPGAEGEKRLISLELKVIADVGLVGKPNAGKSTLLSRLTRARPQIADYPFTTKHPNLGMVQVDADRTFVMADIPGLIEGAHSGAGLGHEFLRHIERAGILVHLVEPSPTDGTDPLDNFRTIRSELKQYDVKLSERPEIIVVTKAELPNAEEVRQIIAAEAGLPVLLISAVTGQGLNELTRAITQTLAEQTQKVAAATAKSKFVRPVSNEAIAEHGLHAAQREQDDAPAEEAAVPETAVPEAVTPEVRASETTSPDSAES
>NC_013720.1|WP_012910835.1|2415094_2415343_+|50S-ribosomal-protein-L27
MAHKKGQGSTRNGRDSNGQRRGVKVYGGQAVKAGGIIVRQCGTKFRAGANVGQGKDYTLWALVPGLVKFDCEGRRVNVVAAN
>NC_013720.1|WP_123784713.1|2413882_2414884_+|hypothetical-protein
MAASILGAAASPVMAQSPGPGPSRQLAPGILTVIPPKPEEEEMVSGPTLLAEIPAEISELDYTPNFTPKSATLLEQAKAATLRRTIWNLEFAFKPMRMIIIDVPQTSGKAQKKLIWYMVYRVKNNGGHLSAKEAVETVTDSIEHKRFEIEKTNEVEVFGRKGTSLRFFPQFVLASREYEKSYLDRVIPAAMAPIKAREFPGDKQVALYDSLAISEVNIPLSDAMNDRSVWGVVTWEDVDPRIDYFSVYVQGLTNAYKYEDPVGAFTKGSAPGTGRKFTTKTLQLNFWRPGDAVAQNEDEIRYGVRLDSNEAEQQRIFALYGVSGRLDHLWLYQ
>NC_013720.1|WP_081441443.1|2412866_2413382_-|sigma-70-family-RNA-polymerase-sigma-factor
MYDTLAPRIWQSVARRVGPHQHEVADIVQETFLAAAGSLRTFDPSRGTLWGWLSGIARRQAALYFRRRQTRPPSFETSLFDAESAQLETSEPLPADLLSAAETAQSVREALSMLPLDYEELLVARYLDELSLDELAARDATSTTALQSKLARARRALRSALARVTGERVLP
>NC_013720.1|WP_012910832.1|2403399_2412870_-|vault-protein-inter-alpha-trypsin
MTGSPHPVPPDDSDKLLRDLVGLLARDAAPIDRALLARLRSESLAQFNLRANSSPNLRERTSMAAIRLLVTLAASLILAAGIYLGSPGESATALEQAIAKIHDAPSYRGQLQLGDQILEVVGQGPSDLRLSISPERYFVKDDLNLWQVDEQQNVARHLDSSQIEIPTSAARTTEVTLGTSASTGMHPLALLGLDPATITLDQPRAPREQQPRILSGTARTLADQSLASFQISFEGDSVVPKTFQIVPRHAGEIPRSFTVELLQGKVDPQLLRVSDTLTADGRVGDVTDVIGVAWIKSAEATRWTPLTNLTLLFPGDMLRVDDQSRSAVAIALAGNSSLIAGPGAQLVLTSPTAITLTAGEIRTASGKRELTLTGPDQKVTKLSGTELLRASGKSLEALDKTPLWLSAYLGKRSDQLLGSLIANVDGRSISLDVGTHHVTIDIRDQIARTTIVESFINRTDAVLEGTFHFPLPADASISGFGMWIGDELVEADVVERQRAREIYETILREKRDPGLLEWTAGNQFQARVYPIPAKGEKRIKIVYTQVLPKHGQQIRYRYNLASELLQQNPLADLQITANIVSHLPLTKVASTTHPLRVSQSPLTARAEFSAANYRPTRDFELTIETAPQQSPLTLIPHRRGDDGYFLLLLNPPGGDAAWRRTEVASSAPLQLTLLVDTSASMRGEARRLQLQTVTALLRSLGPDDRVLLGAIDSSACWASDEPVVASEAEIEKLLRFISSRSALGWTNLDQGLATAIERSAASSHLIYLGDGLRTSAPHVDTGALAAKVQKQAASKQVVLHAISTSSLLDATLLEAITRGSGGSRREVTGEATPAQVAAELLTEITRPALQNLTLEISGIRTARVYPRQLPNLPAGAQQIVVGRYLPEGEKLAGEIIVRGTSAGKPVEFRQSVEVAAPASDASSDEASFLPRLWAKQHIDQLLLEGNSAEIVSEIIALSAEYHLITPYTSLLVLETEEDRARFKVKRTMQMKDGERFFADAQTKVREALRYQQMIAARAFRAQLMAQARTQLATPPTLADLRENLDQIYRSTGAAMIPSLWAGGSSWGFSDGYKDHLTTFDFITGQMLGRYGGMSMGGGGLGGGGIGGGFGSDPFGGEIDDNRRYVTDSLLSLNALKETENYFALGDTLSLGTDVDGSALSVDLTDFGEQSLPEHDFMLSVGNFPGSGITGRGQAFAITGRRLSDRKGQERGMLAETRSRPYVDAIHDPIGMIAGAIPASPRKLHSINKQPATWSQEAFQLAQQLLRSAQPQSLTESVAIRQTESRRDLSQPGFTLSSEQRILLSPKAWLVRQEGSNPETNYCTRDTRGYLWPMYQLHLSRAAAASDLEQPPVILTSELQAHLLYHHREFRAALVPADKPDHVWLELRDPLGDERHSVKLLVHTKRLTIVELWTKFNGTYRLASRFEKFIQVGQQWLATVEVTLDDEGREVVRRERTIELRTAEQFDADFAASMKLREGLLAIELPLRELRVNAPPMGKLTPSDRLAWIGTLIEHQRYSDTTDQVQLLKNEPHADWIWQLLMLQLASHNRDHRPTLALLEAMLKQLATQPHAGELRLMGELQQYARDILTTPQQQQLHELARPIVLRSPATSYHRYQWHETAAALEYELDNARGIQLYLDNVKQFPESTEAVLVAADRLHREGESLAAHEIITSAIERMQQLKRTSNLDHLFAKSWQIFVDDGAIAESAELLEKWKKAVPEPSYSRVRIEYYVLLSMGQKEALDARLRAALAAAADHRQLTRAEEIELTQASSVIANNVGGFQSFNTPDNDGKYRFEDQVARALITQAASESPRMALYDLTVSNQIREPVQSHIRQTILRNLLARCETLPIFEIQTLAEFLENFPAAIEDEQKVTEPIAERLLERLVADQSDRAKLALGEAILSLGLSDLQGKPILQLLIAKTTGPVRDEFHRQWIEQQRGSSELEKIYAILPELKNLSRAKTGTQQLVDQLQELDLVVERIEKQADTNDQQRIVRDPKLTRTQRSQQLQDAKIAARKKLRSELEKLADKRPLWNLQLQLKMAALEKQFGSESAALVKNGWKLIGEAREIAASIAADKQLADDEREALLLVSATLHQVALQFTAQLVTADKQPAAAVDQLLAELREKPQPGEIDAATRRDLEYLTLLAADRSREVQQMLRALLADDPTSPRVRWELAQLQAEVGELSEAIATLQPLEAAQSLDESQLDQVARWRLALGEQVASQQTLLAKYRRTSSYDLSEQVKSELRNLPAGETADERTLDKMRVVLEQPNSLRNIGDEIRRSYRQSRDFRLLSVLAESLIGRDQSDAIDQLIAFQSVLEDVYEEASTDEMVRYARELQTKHPAPHDQRSLELWMMLAEARAAMVEGAAARHATQAMEHWTRAFPTDQPIEHPEKVIRLLGVQTAASHAPLVDAWIATAERCLATEKLGTRERLSLAVDVADFLSRQDREEKGALLLAAELDAALAKNAGKPAKFMLTAIENLTEQEMNVGNFRSSETRAIKLLKETSPSQLQDRLKLLLAQIYGRAVADAGETSLGRDGAQFQSALVYQTTELRQAIRQQERLEWYAALTSLLEAGLDLNLPGAEATALATLREVAPWVVERVHSNQDQPAERALSIFADHHLVNPAIELGLLLLEKEPQFRQWQGTSIWDEIAGTMGSALEDSIAAAESGENKPGTKLRADLEKKLLATVLPRLMRYLRREPGEAHEFFDRDGRYYWATKQAEFLKVAQELAGQSRDEAIILRCGSYVRDVLHLPAEAVSLLVNARERKLLSDSGSYTLADWLVEDRRYAEAVAILGPIIENKPTWFEPQWLWIRATALTGDVAGAKERFALLRKQVAAEKNRSQHHQHQLVRLAVEFGWSREAHELVAPLVAQRLTLTGGREDALLAEWYQLDAQALAELGQTQEAVEAAASAMVVAARDPAQQEVTRKTLATVLEKCQDLPAYIAWLDKQTAASAQDRPILRQAIATELERRGEVQGAIAQLRIAIEFTPEDEALAQQLIDALRSAGESEQLREQLYSSLEIHPRKTLWWDELAELYQQSQDPQSADRARHSIADTAAGEADSYLAIGRALRAQKRSAEAVHCFERAVELAPKSREQLLEAARQLIELGQQQQAAAAIKTLRAIELSVEERQTLDAEIKKLEAVRIPMRAME
>NC_013720.1|WP_123784920.1|2402140_2403259_+|D-TA-family-PLP-dependent-enzyme
MAPYAVHDLSQIPSPALLLFRELIEANIDEMIRVAGSAARLRPHCKTHKLGPIIALELVRGITKHKCATIAEAEMLALAGVRDILLAYNIVGPNIARVIQLVEQFPGLELIVTADHPQPVAELSRAISSRTSAVKIGVLLDLDSGMQRTGLPPGEAAIALYTQISQAPGLRAAGIHLYDGQNHQREIGERISAVTHCWNLAKQFAAELESRGLAVPAIVAGGTGSFPVYAAIQDARLELSPGTVVLHDQGYSETYADLKFTPAAALLTRVISRPTERRVTFDLGYKAVASDPPMASRLILPALPDAKIVLHNEEHLVLETPGICDLQPGDACLAIPRHICPTTALHEVVYVISQGRLETTWQVAARRRTLSI
>NC_013720.1|WP_012910830.1|2400944_2402105_+|thiolase-family-protein
MPASAVIVDAIRTPVGKSSESHGLYRQTRSEDLVVACLRKLVERCELDPHSIDDIYLGCTQQLREQGLNIARMAALLAGFPPTVPGATINRLCGSSLEAIRIAAQQIELGEAEAILAGGVEHMQHLPMESTVDLHPELARYTSRASVRMGMTAEFLAERFSITRAEQDAFALESHHRAARAAEQGCFAREMVPISGLDTSGQPVLATRDQPTRGDTSLEHLAALPAAFCRHGSVTAGNSSPLSDGAAITLVMDEATAKARGLQPLARIVGSAVAGLEPSLMGLGPVVASRKLLAKQKLDVAEIDRWELSEAFAVQTLACIEQLGLAPQRVNLSGGGLSIGHPLGASGARMMATLVHGMVRDQVELGVAAMCIGMGQGIAILVENIT
>NC_013720.1|WP_012910841.1|2420815_2421232_-|hypothetical-protein
MTSAQRKLLGLIGGAILLAAMGGCRPQPVEGGTAGSLVIQGSPVSEIQISVHQNTNGSWTKIGFGDTRADGSFELVKLGAEGPLVLEPGEYRFTLESIGVPLFLPPIYTSPQATPLVVQYPTSDGSIPLVIGSPAPGR
>NC_013720.1|WP_012910842.1|2421228_2422659_-|PepSY-domain-containing-protein
MTNLQPTPRRSWPDYRAVWRWHFYAGLFCIPFVIVLSISGAIYLFKQEIEDAIEYSQNHLTDIAAPREVDAQIEAALKANPEATFASYELPRTITSAARVLVKQHGVTDRCYVHPTSLAVIHQVHEQDRFMRLIFRIHGELMLGDRGSYLVELAASWTLVMLLSGLFLWWPRNAKGLGGVLYPRLLGAKNIFWRDLHGVFGMWISAFAILLLVSGLPWSKFWGDYFRTMRQLTGTAVTQQDWSNGSEKRAARRSSGDHEGHTGARGNRGEDKPVDLAGVNRVAEVARGLNLAHPVLISPPQRGGTNWTVKSMAANRPLRTTIVVDSSTGAIVSREDFSDRHWVDQVVGYGIALHEGALFGRLNQLLGLLTAAGLVLLGASGVVMWWRRREAGSLGAPKALTASRWSTVLALVILALGIYLPLFGLSLVVVLLLEWSVLRRIPAARKWLSLDEPGSVPVVSTAEELSAGVLATEGKR
>NC_013720.1|WP_044181471.1|2422682_2423777_-|DUF1559-domain-containing-protein
MSRTYSRRRGFTLVELLVVIAIIGVLVALLLPAVQAAREAARRTQCSNQLRQWGLAAHNYHDTFGAFPMTNAQNYLPNTQGFSPQARLLPFIEQLNLQNTLDFAQPAFTGPFNALVPNPAFAASFAQPITVALCPSDPAPVINEGAGGARYSGINYMVSFGSGTGTNYDLRWRTDGVVYENSGARFADLTDGTSNTVFMSETVRSVGPDFTLPAGQLPKAPYQATLNGSSGVTATLQAFPGMSGSGGGWSNGPSGSIENPDLATIWPQKTSWRGAASAALRGRGTSWAHSGAMSTLTNGYSTPNSRIPDVVTHFTGFFAPRSFHPGGAMAMTADGGVRLLPNSIDLLVHRAMHSGNGGEAVSQN
>NC_013720.1|WP_052303617.1|2424070_2424535_-|hypothetical-protein
MSADACWRSCCCHTNQQKLAWAKQHGVQPPSYVVAAAAKEAGVSRSCCSASKSCCDKPAAPQPCATAKSCCDAASDELTSDEPTLRLSWASIAAYDKCRGKTSTWLSIGHAINVSPLPLSVAPTTTSEPIFLARQSLTSLAYAPAVPPPRSVAL
>NC_013720.1|WP_012910846.1|2425471_2428543_+|hypothetical-protein
MASAGSGSSQPSGASGFDPYHELLGIPAIEQPPTHYRLLGLAVLESNPKVIERAADRQMQHLRTMQTGPYAAAIQKLLNEISKAQVVLLDPAAKAKYDTHLQAQLEATQRAATVSHLEPLQPMTELLPTADPLLAGFTAPATTQSPGVVRPAKSQHNLSMVFVAGGIGGLAAIVVLAIVVWQMQSPPAPELATDTTNSQDPTAVPSSTALPPPLPLPPPAPSSSEPPKPPANPGKSAGEQLASENGSTMSPSMEGQPSTTDLPTGPNETPENTSEPAAPSGTGIEEDVPQTPNDPSAAQLSQETRAELDQAKADLRVYPKFEKYYTHLDAHPEQLATNGPKLAQILWDEVTTNQIIADHKPSFLAAMEEVERLALAGGNYELALRTIDARLGQKSSIFQLPEAMATKLNALDVATAMAAAPRATAEVRKEVQESLLAAIEEVIEQRRALSIAPLVKNILEITRTSQDRLETIPRLLAIVDRAISQADLSSAVACLEGADELLKKVIGKERLALTQLRDQTDIRLKNFQAFEVAQADLKQNPTNPSANEKFGLLLLERGKVDESLPFLVQSASPELKQLAMATSQAGDDASSLEMLADRWSGLATAERVGPAMIAEQLLRRALDQEGLKGLARAAVEVKLQRIEKLTEASKASIAAAPTLPLPNNSEQGSPLPGWTSLPKNRWFEALPLIDFCDDVACGYWYNDNTVLWVARQGKPISKIEVPLQLGGCDYDLQLDFEIVDGEDRMVVHFPLGTESTYFVLGDYTDLGKRTFFYRGRPSEELKSDEFIEGNIVKLKQRYRLLLTVRQKEGGAELASFLNDKPVLSTFLPHEHAKNDGPWNARDPQRVVLTSLDAQSVYYSLRVKMLTGNGRYQKPIASDERWPPKIRSLKTLPLTSLPWTSIQANYEPVGNSKDPSKPVVPGVKKPVIDGKECDDFIFAHAKSRVTYDIPPKAKYFTSYCVNVRSVSASFSVRIDGVELFRTEGKAISRCLVEIPPGSKTIELICGDMGDDSFDHTMWAYPAFR
>NC_013720.1|WP_012910847.1|2428565_2429174_-|hypothetical-protein
MTTTNHSTRPSRLARRSFLGLAGAMVVGSITSPLGGAEVDKVAFEDRLKAGDTNLQLQGCGLMYYKTVFKALAAALYIDEKADLRDPLADVPKRIEIEYFWSLKAKDIVAASEKLLVDNVPADKLKQLRPAIDELHSFYRDIKPGDRYALTYLPGVGTWLTLNGKMLGNVRDPEFASAYFSIWFGKKPMDVALKDQLLSTRR
>NC_013720.1|WP_123784921.1|2429413_2430634_+|membrane-dipeptidase
MLLAALPIVLIAEEPPAAALERPAPVVMTERGREVHRAAWVFDGHNDLPWEMRTTASSSFTKRDIAQPQPAMHTDIPRLRAGNVRAQFWSVYVPAETSKAGTAFTDTIEQIDLVDEMVRKYPAHFAFCTKVSEIEAAVRDGKIASLIGVEGGHAIEDSLEKLRQLRKRGAAYMTLTHSDTLQWADAATDSAKHDGLSPFGEEVVLEMNRLGMLVDLSHVSDATMRDALTISRAPVIFSHSSARAIANHPRNVPDDVLKLVREKQAVVMVNFFPGFVVPESAEIMKELFKVSRALRAEFPMESDYRRERRKWEATHPYPAGDIHHVIDHIMHLVKVAGVDCVGIGSDYDGITKVPKQLEDVSTYPLITEALLERGLEPADIEKIMHGNVLRVMRAAEETARSLNAAR
>NC_013720.1|WP_012910849.1|2430661_2433421_-|carboxypeptidase-regulatory-like-domain-containing-protein
MFGLSPGFSEKNKRHSAAPRLRRALLERLEDRSMMASLPYGATAADTGEYMLGKVHVTVVLMESTPTMSPGDNGVVRITPTGGSAYNFNYIPENWNSTLISSVKNKVIEATNWWEQTLDTDPNVRDGLLDYSVDFTYADSPVPTGYEPIARPSNDFALWIYDFLNTTGLPISGNFSTDIRTFNNFQRERTGSDWAFTLFVVNDTNDADKQFDPSGAFDRSFAYAGGRFAVVLASRPASIFAHEIGHQFWALDEYAGLGNYSAKRGYYNTQNVNSAENPTPGFSQQPSLMSNDPGLTQAYNSFTTSDASKQMIGWQDSDGDGIFDVLDVPFSLSGSGSYNASTGMYNFKGASSVETLANLNTSGLGNDITINKIRVAEYAIDNGPWQVAATYENLYSTSLDLSFPVPSGDHEIRIRTHDTVTGAMSPEFIASTRGSSAYTESGIAGYLYRDDNDSGTWDVGESPLAGWNVRLVDDLGQPLQLSHVLEPNDYANSHVLSTQLAGIRLSVQGGDSLASNRDVTAVVATIQPSAGKVFGGRSAVFGNVRETWSSTRFLKIEFDTPQSSVSIKAYSGGTASYGRLEAYDATGKLIERYTTSELTGSSSEVMRIERPDADISYVIARGHMGTEVVLDSLEVGPATSTVTDANGAYVLPLLPSGTFNVAIEVLPTYEPTTALGSEAEVIVSAGETTSDVNFGFAPPGNPWTNPFDPLNVSDDRYITPFDALLVINWLNQYGQNPTLPAIRPDGNYFIDVNNDGRCTPFDALLVINHLNLNGSTPAIVGESEPPDEGGNNGSGDGGTGDGGTGDGGTGGSGTGEGGTGDGGSGSGGGSSGGGSSGTIIELPGGPAGEGEPSAEVYDLLLAIPVTSSAATSELTLPLTDDDAEWLALSGSSSLASYVDQWAVDLLAEDRSLGVLKRRR
>NC_013720.1|WP_123784714.1|2433656_2434580_-|hypothetical-protein
MAYAVRSISLMTLVLATVGGSISLTGCGGGGSGEASLNDQYTAALKISDAGVKSRKLAQLAPKQKEAGDIMGADASIASASEAARSIADPVSKANTLVTVAAAAGKLEMSSDKIKELLKEAAATSKEIPDADARIPVLAEVATNTKLYLKNVDAAAEYLRNAEEAAESLPAPLTRAVADAKIGASYCKIERSDDANRVFEASLAKVRGSADQREKSDCLCELAAGMAIAGMSELAAGVFSEAEQAASAIESAESKAYAYLRLAQKTKTAKLTAESGKHLAQAEKLAEQVKDSSVRTPLTEAIEALKK
>NC_013720.1|WP_012910851.1|2434767_2436000_-|LL-diaminopimelate-aminotransferase
MSDPYFQTLFAERIGGANYGKGTEIYKFEKIKRAKRRALAEFPQRSLVDFGIGENDAMAAESVRARMVHELGLPENRGYMDNGNTAFKEAVARFMHRNFDVELDPMTQVNHCIGSKPALAMLPACFINPGDVTLMTVPGYPVAGTHTRYYGGSVYRLPLLAENDFYPDFKSIPADIWEKTKLLVINYPNSPTGKTATREFYEQVIELAKKHSFVVVQDAAHIMLTYDGPPMSFLQVPGALDVGVEIHSLSKGFDMIGWRIGWVCGHERVVRAFADVKDNSDSGQFGAIQNAAAAALDDDSIPHRVREKYRRRLEKLVEMLTRCGFKCEMPGGTYFLYTPAPKGLATGEKFENAEAASQYFITQHSIVTVPWDDAGPFLRFSVTYEAADEAAEDQLMAVAEERLKQCRLVF

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Crispr_ID: NC_013720_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013720_5

3051289-3051392

Orphan

Consensus_repeat	Method
CACACTGCTGGGCAAGCCAGCAGTGCCACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013720_5

>merge|NC_013720|5|3051289-3051392|CRISPRCasFinder
CACACTGCTGGGCAAGCCAGCAGTGCCACCCGACGCAGCAGGAGAATGGGATGTGTATCGCTGTCACAAGGTTCACACTGCTGGACAAGCCAGCAGTGCCACCC

>NC_013720|5|5|3051289-3051392|CRISPRCasFinder
CACACTGCTGGGCAAGCCAGCAGTGCCACCC	GACGCAGCAGGAGAATGGGATGTGTATCGCTGTCACAAGGTT
CACACTGCTGGACAAGCCAGCAGTGCCACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013720.1\|WP_012911258.1\|3036682_3041428_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NC_013720.1\|WP_012911270.1\|3054014_3055454_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368090
NC_013720.1\|WP_123784737.1\|3049118_3050195_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|179579
NC_013720.1\|WP_012911262.1\|3044441_3045086_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NC_013720.1\|WP_012911268.1\|3051418_3052765_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_013720.1\|WP_012911275.1\|3060986_3061247_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NC_013720.1\|WP_012911261.1\|3043389_3044445_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237558
NC_013720.1\|WP_044181590.1\|3041424_3042087_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_013720.1\|WP_044181596.1\|3056471_3057263_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012911257.1\|3035108_3036323_-\|squalene--hopene-cyclase	unknown	unknown	gnl\|CDD\|238362
NC_013720.1\|WP_012911264.1\|3047177_3047855_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136
NC_013720.1\|WP_012911269.1\|3052839_3053859_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_013720.1\|WP_012911273.1\|3057334_3057847_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|394846
NC_013720.1\|WP_123784738.1\|3055773_3056463_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NC_013720.1\|WP_012911260.1\|3042425_3043307_-\|DUF1028-domain-containing-protein	unknown	unknown	gnl\|CDD\|377639
NC_013720.1\|WP_012911276.1\|3061253_3061685_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NC_013720.1\|WP_012911277.1\|3061681_3062683_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NC_013720.1\|WP_123784736.1\|3048195_3048816_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012911267.1\|3050397_3051171_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NC_013720.1\|WP_012911274.1\|3057990_3060990_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|236869

Protein	Function_ID	Function_description	E-value
NC_013720.1\|WP_012911258.1\|3036682_3041428_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	5.67882e-24
NC_013720.1\|WP_012911270.1\|3054014_3055454_-\|hypothetical-protein	gnl\|CDD\|368090	pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase, N-terminal. This family represents N-terminal domain of a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes. The EC classification is EC:3.5.1.23. The enzyme hydrolyzes ceramide to generate sphingosine and fatty acid. The enzyme plays a regulatory role in a variety of physiological events in eukaryotes and also functions as an exotoxin in particular bacteria. This N-terminal domain carries two metal-binding sites, the first for Zn2+ residing within the domain, and the second, for Mg2+/Ca2+ lying at the interface between the two domains.	0.000353407
NC_013720.1\|WP_123784737.1\|3049118_3050195_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NC_013720.1\|WP_012911262.1\|3044441_3045086_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	5.29777e-39
NC_013720.1\|WP_012911268.1\|3051418_3052765_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.96467e-39
NC_013720.1\|WP_012911275.1\|3060986_3061247_+\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	7.23604e-19
NC_013720.1\|WP_012911261.1\|3043389_3044445_-\|hypothetical-protein	gnl\|CDD\|237558	PRK13920, PRK13920, putative anti-sigmaE protein; Provisional.	0.000531876
NC_013720.1\|WP_044181590.1\|3041424_3042087_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.26406e-27
NC_013720.1\|WP_012911257.1\|3035108_3036323_-\|squalene--hopene-cyclase	gnl\|CDD\|238362	cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system.	1.55117e-05
NC_013720.1\|WP_012911264.1\|3047177_3047855_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	6.59494e-21
NC_013720.1\|WP_012911269.1\|3052839_3053859_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.63387e-17
NC_013720.1\|WP_012911273.1\|3057334_3057847_+\|hypothetical-protein	gnl\|CDD\|394846	cd21560, betaCoV-Nsp6, betacoronavirus non-structural protein 6. Coronaviruses (CoV) redirect and rearrange host cell membranes as part of the viral genome replication and transcription machinery; they induce the formation of double-membrane vesicles in infected cells. CoV non-structural protein 6 (Nsp6), a transmembrane-containing protein, together with Nsp3 and Nsp4, have the ability to induce double-membrane vesicles that are similar to those observed in severe acute respiratory syndrome (SARS) coronavirus-infected cells. By itself, Nsp6 can generate autophagosomes from the endoplasmic reticulum. Autophagosomes are normally generated as a cellular response to starvation to carry cellular organelles and long-lived proteins to lysosomes for degradation. Degradation through autophagy may provide an innate defense against virus infection, or conversely, autophagosomes can promote infection by facilitating the assembly of replicase proteins. In addition to initiating autophagosome formation, Nsp6 also limits autophagosome expansion regardless of how they were induced, i.e. whether they were induced directly by Nsp6, or indirectly by starvation or chemical inhibition of MTOR signaling. This may favor coronavirus infection by compromising the ability of autophagosomes to deliver viral components to lysosomes for degradation.	0.0049119
NC_013720.1\|WP_123784738.1\|3055773_3056463_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	2.33112e-113
NC_013720.1\|WP_012911260.1\|3042425_3043307_-\|DUF1028-domain-containing-protein	gnl\|CDD\|377639	pfam06267, DUF1028, Family of unknown function (DUF1028). Family of bacterial and archaeal proteins with unknown function. Some members are associated with a C-terminal peptidoglycan binding domain. So perhaps this could be an enzyme involved in peptidoglycan metabolism.	1.41806e-75
NC_013720.1\|WP_012911276.1\|3061253_3061685_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	2.79368e-54
NC_013720.1\|WP_012911277.1\|3061681_3062683_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	1.73957e-158
NC_013720.1\|WP_012911267.1\|3050397_3051171_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	6.25828e-81
NC_013720.1\|WP_012911274.1\|3057990_3060990_+\|FAD-binding-oxidoreductase	gnl\|CDD\|236869	PRK11168, glpC, anaerobic glycerol-3-phosphate dehydrogenase subunit C.	5.23727e-90

>NC_013720.1|WP_012911267.1|3050397_3051171_+|SDR-family-oxidoreductase
MTVSDLFSLKGKTALVTGGSKGIGLAVARGFAEAGAKVAIASRKVADLEKAKATIGEGLDTQVEYFVTDMNDRDQVGKLAADVLAKFGRCDVLFNNAGNNKPQNLVDTTMEVWDEILELNFTSCMLLSKHLVPGMIERKWGRIIYTSSVMALASNPGRGLYSATKAALVGMSRAQALELGPHGITVNCLAPGPIATDLPMSLLSDEQKKAFASRTALLRWGQVVDMVGPVLMLATDAGAYITGTVISADGGMLCRTF
>NC_013720.1|WP_123784737.1|3049118_3050195_+|3-isopropylmalate-dehydrogenase
MLVASPLKLAVIPGDGTGPEVTAEALKVLAAIAKLEGFTYETTTFDWGGERYLKTGETLPAGGADELRKFDAIYLGAVGHPDVKPGILEKGLLLELRFQLDQYVNLRPVKLFPGVECPLVGKGPEHIDFVVVRENTEDMYAGIGGWLKKHTADEVATQTAVYTRKGCERVIRWAFDYTMKRNNPKGKMLTLVAKTNVLTYGHDLWWRTFQDVAKDYPEVKADYNHVDACCMWMVKNPEYYDVIVTTNMFGDIITDLGAMIQGGLGVASGGNINPDKGGVSMYEPMGGSAPKYTGQNVINPIAAIAAMSMLLEHSGQPKAGARVMDAIQKVTGTKMKSQNAGKMGYGTKEVGDLVIAHL
>NC_013720.1|WP_123784736.1|3048195_3048816_+|hypothetical-protein
MANLPLGASMLRWITSLILSLAVLVTASAADAQSTTEYYPLKKGNAWTYKAGKVVELQVKVSEVAEDGTATLDTVHNGMTVATEKVIVKEDGIYRSELAGMEISPPVKILSLKDKQPSADGTTWEIMADIGTSKLKGTSKKGSEKVKVPAGEFDAVVVDFDGEDVTLGLKTTARTWYVPKVGVVKISIKVLGNETVLELEKFTPGE
>NC_013720.1|WP_012911264.1|3047177_3047855_+|class-I-SAM-dependent-methyltransferase
MSLVRVLENEVMDSLEEATTYDEMDHSTVNTRFVDDLLAAGLPGNDVLDLGTGTARIPMELCRRHADCRVMAVDAAGAMLDQAYYNISAAELTGRIQLAQADGRKLPYADGLFHAVICNTIVHHIADPLPVLAEAVRVTAPGGLLMIRDLTRPDTEEQLATLVEQYAGQEAPYAKQMFGDSLRAAFTLAEIRDMVASLGFPPDTVTMTSDRHWTWLARKGSETRE
>NC_013720.1|WP_012911262.1|3044441_3045086_-|RNA-polymerase-sigma-factor
MKATFPEIASQNTGVNLSSLTDEQLLTRYRDTRHRDYFSELVGRYQRELYSYLRRYLQDAELAEDAFQAAFLQVHLKCGQFEADRSFRPWLYTIATNQAIDAQRRSKRHRMVSLDRTSSTGGDDLGTLMDLLVSSEPNPTAQLNSEERRTWISDAVEQLPEGLRQVIDLVYFQELKYREAADVLGIPVGTVKSRVHAAVLKLTEMWNHSHPESP
>NC_013720.1|WP_012911261.1|3043389_3044445_-|hypothetical-protein
MSTSREHLLGYLLGALERTEIEQVEQQLAADPRLAEELMRLRDKLDIVGLCDAPLYHEPPADLASRTLDFVLATPVEEVSPLVSVAQARLATAVDFQDQPHLSEISPASYSSRTWYSLSDVLMGISVSVAALVLFFPAIAHSRFQSELAVCQNHLRQLGFALQEYSDHDPDHRFPQISQTGNRSSPGIYGPMLVSSELVSDPRLLLCPSSKLANDVSSFAIPTLDEIDRADKSSLQKLRERMGGSFGYAMGHLMNGSLFAPANARRTNYALLGDAPCDSQPGRRSSNHGGRGQNVLYEDGHIAFISCHDCDSLPDDPFHNHQGAVAAGTDPNDSVLGHGFDSPIPITLVGQ
>NC_013720.1|WP_012911260.1|3042425_3043307_-|DUF1028-domain-containing-protein
MNTKIHRRSLLSRALLTGSALGLSSLSPAALAPSWGDDLSSIARDELAQQRERREIVATFSIVACDPEHGEVGAAVASMYPSVGRVVPYVKAGIGAFCTQHYHVPKWGEPALAMLKEGKRPERVLAELLESDPQPGARQLAIVNMKGEVAVHNPDTAPKESSYWGAQTGKFYSCQGNTLTGREVIAGMAAAYEATEGSLADRLMAALLAGDCAGGDHRGRLAAGIRVDKVREQDEAEFKLWLDLQVDRSDDAVIELAEAYAKLEHEAKGAWRGGKLPFQHPCKERPEPAPPTR
>NC_013720.1|WP_044181590.1|3041424_3042087_-|sigma-70-family-RNA-polymerase-sigma-factor
MKTSRPTSAALEMARDLSVVRDLAASGEATQRRGEAYEVSGHHALVQAVQRGDKKAFSVLIELYQQTVLGFLRARLTEHSDAEDLSQEVFLRCYLGRERLDRASAVGSWLIGIARNVLREHVRKRQRRKEVAWTELCLEIDELRVSVADHDDESMQHLPACISSLGPSARQAIELRYGAQLRMAKIAEYLKRSEGAVKLLVHRARQALKHCLDTKRGGAA
>NC_013720.1|WP_012911258.1|3036682_3041428_-|PQQ-binding-like-beta-propeller-repeat-protein
MTDEQLLALVEQKAPEELTLEEIELLRSRLETSPAIREALAAQLEVDTKLSVVLARSTKLTPEQILARQPSLAQGNSRVVLIALLLVIPIVGLSGAILWNVIAPSIASVDSADDPAKETNESDADQPETADDKTAAASSSDAEDPASQPASGQPSGPTPPRAENAPGNPAPAATSEPVKPAPPPLPWQAVIDAQGPLPPLSEVAFRQFDTEKKLPLTADVRPWFAAVPGMNHRIADTNTQRGKCAQLEGIARLLSPWTNDSALRLSLENYNQLQIHCYSGSSGVTLYYYEDQSYKWAAYTHTRDGNKPRPKSQSFTLTSTDDERNRRSEIRHGGPIELRYRNGQIILSRGDVQLITAPLPTAPDDVYFDGRVAFHGIELVRTEGDPRPLHSAPVALAIEKPAELTWQFANPSKTPSQEDLEWAAKFMPQPVAGGGIRLSADNPERRLNYVALLPRPVLGEVVLQLADIGPGTGVFLGRADGKSHEVLRFLKNKRGDCPLVARLRGWETEWEADFYPYTERPLAATQTACFVKLNYGCGSVRWSLSADGKSWATVDVPHENQPGEVMSIGLEIPQKTPKTGITIQRIELREFTGLTQLAQADLLAKVPHVGDLTTYAQWQAALLASQPREVPLDAWRRTFAVATLAQGLTSKVSFPVLEGLLDDPLLATLPLEKQIAALSDAALMTSDFRNNQSMRRSVPQRFIDLAMREISRTGVQSFSEIRRASLSYSVNSWQQQEFDPSDLFRALLCHAVYEGNPADILMLSQQLRFYHTAERAPLLDWAESIALRSRVDASGEGLTRLKDGWRHPLIEQLSKDTYSRLTEIQSVIESEAWNDAARMITSIDPESAPGVAPYFGDRSLLASLPVAIDLMLADHPPLREALATQFAPLAKLRLAQATLSGNAPLVELAAVQFSGTDSAAEAHQWLGDRALASGWFERARLEYEQARARNPALAAELAPRIRLAAAMLGVEAEAPVTADVRFGDISMSASNYETMIREMIARGDRGLTAVAAPVTDVPAPTSYTLKTQARLDGPAGERPNEEQGSRTNQNKVPWVDLQIEQVLDGNILYVSNRFQLAAYDLSNNGTRLWQSQAPPGSMQAAQKLTGIPFRPVVTSDRIFIRMHYGDSPQLCCYEKSSGKLLWNTASPDRQRFISDPILLQGRLGVMGLSPLEQDEAVVTWQLVDWASGQIQSTHEIVRLRSIWLARQQCDVAADLDQAIASLGGIVVAFDPRGQVRWMRKQTTMPPEEDSSWVRQRFQPPLVVGDTAYIAQAGVRELLAVDRKTGRLRWSRVLPSLVGITGIAAGQLIAEESTGLTALDPATGRSVWTYDAPHMHPRVMLGAKSLLIATRYPLKENEKPRASRLIWIDAATGLPTQSAKLEGLDDDEPRIGLMQLRGDRIWLWFGKSQHDTTRDLVELTPSGPALPVVVLDPSTRAWQQRLAPELREATALLASPFQLLEAQAGDRTGLLAEAHGKSQVVSLRGDTNNPILWSMPAAKLTGGKKLRLEAARDNGWEGKITLRCGDRVLQETVITDAAFPDRWVNLTADLSPAQASTDWITLELLQTGGGASPWYFKTLAVE
>NC_013720.1|WP_012911257.1|3035108_3036323_-|squalene--hopene-cyclase
MPSVFRYSILAALLPMLVVGPLAAQEGSKTPAAATRAVAGPLLTPDNELTPASELALDRGLDWLARNQGPEGNWGSKDLGLVSMGALAFMSAGHAPGRGKYGRELDRAIEYVTNNAKPSGLLNISDQQRDMYNHGLATFVLGQAHGMTTTKDRRLNRVLDNALKLIASTQCEDGGWDYQAKRQQFGHDLSLAVMQAKALRSAVDSGLEVPPEVINLAITSVREHYSPSGDRRATEAEQQKMPGQFTYGRGGGGPSIAMAACGVVCLQEFGQYDDWRIPKNMEVIQAAIRELPKSKNRDGNMPFDAYTLYYVGQALYQVNGEYWQTNYPLLRDYLVESQINKVGEPNIHGCWRDNGARGGGRVGGKEGELYGTSVACFILAIPNRYLPILQEGKIESFRQKYSEN
>NC_013720.1|WP_012911268.1|3051418_3052765_-|Gfo/Idh/MocA-family-oxidoreductase
MKSNQALHSSKLLAGRRKFLTTSAAALGALSLGAYVSESPARASRLASEKLRIAAIGVTGRAGANLGEVARLGEEIVALADVDDNLMAKVKDQHSGATCYRDFRDMLDKQAAKIDAVLVGTPDHTHAPAAAMALRLGKHVYCEKPLTHTVLEARTLNNLAKEKKLVTQMGNQIHAGDNYRRVVEIIQSGAIGKVSDVHVWAGAQYSGAKFTAAEAPAGLDWNLWLGPAADRPYSSDVHPFQWRRFWEYGNGALGDFGCHFMDLAHWALDLKAPTSVEAKGPPVDSVSCPDWCEATYEYPARGESPAVKLFWYDSGRRPELLKKLSHSKTKPADWSGGLLFIGSDGMLLANYGDYVLFPEEKFEGYKLPAETIPRSIGHHREWTTAIRDGGTTTCNFEYAGALTEAVLLGTVAYRAGKKLDWNAADMKFTNYAEAEPLLHKEYRKGWTL
>NC_013720.1|WP_012911269.1|3052839_3053859_-|Gfo/Idh/MocA-family-oxidoreductase
MYVRTLLAITLGFVLISPTLAEDSKVMRLGIIGLDTSHATAFTKEFNKPDQTEDLAGFKIVAAYPKGSPDIESSTSRVPGYIEEVQKQGVKIVDSIDALLAEVDAVLLETNDGRPHLEQALPVFKAKKPVFIDKPVAGSLVDVIALYEAAKKYDCPMFSSSSLRYAPGAQEIRAGALGEVTGCDAFSPCSLEKTHPELYWYGIHGCETLYTIMGTGCEKVTRVSTPDFDLAVGQWSDGRIGTFRGIRKGSAGYGGFAFGTKGSREIGKFAGYRPLMVEIAKFFRSGQAPIDPAETIELYAFMEAADESKRTGGGPVTIASVMEKATKLAGARLAEVESK
>NC_013720.1|WP_012911270.1|3054014_3055454_-|hypothetical-protein
MFGSPRARSLAALALLFLAASALASPCWAILPPLQVGAAVIDITPPEPYRMSGYFYERLSTGTHDPLYARALVLQQGELTTVLIVCDLIGVSRELTTEARSQIAHKLSIDEQHIVIAATHSHTGPLYGGVLLDWWKAKQAAAAEQVKPELDYPKFLVEKLVQVASDAAQKLETTTIEYATGHETSISFNRRFVMQDGSVRFNPGKLNPQIVRVAGPIDPDVGVVLFKTGDKVAASLVNFALHLDTVGGTEFSADYPKYLHDAIAAKLGNQCTSIFGLGCCGDINHIDVSHNRPQKGQEEAARIGAQLASAVTKGLEKTETRMGAQLAASMRVVEVPVQVYSEEQLAKAKSQLALVGTKELGFLEQVEATKIVDLAARYQGKPLPVRLNCIALSRDVAIVCLPGEVFTELGLAIKEKSPFKQTLVLELCNDAPAYIPTKKAFVEGSYEVVNSRVASGGGELLVESAVEMLLSLHQAAGAR
>NC_013720.1|WP_123784738.1|3055773_3056463_+|GTP-cyclohydrolase-I-FolE
MESTDLKLAASHAGCCSADAGSEGVSAHEALVNTPESAMKSPVDLQRIERAVREILAAVGEDPDREGLLETPARVARMYAEMFSGLKLDPREHTRKFFTEQYDEVVLVRDISFCSMCEHHLLPFIGHAHVAYIPNGKVIGLSKIARVVEVISRRPQVQERMTEDIANLLVDELHAKGVAVVVEASHSCMTIRGVRKPGSSMVTSAMKGLFRSNLSTRAEVMQLIYGSKR
>NC_013720.1|WP_044181596.1|3056471_3057263_+|hypothetical-protein
MGSIVLILIEFMFRMCLGISLAMAVTPARYVTSGFYRVHLWVIMGLATFGGLMIYSSMSAAEAPAYLKPQLYLAIAIAVVSYIGAVIWMYEASRAGVAALLIVSLLSLVAMLAAVLKLSAAMIAWQMLDRITGSFVVGLVTTAMLLGHWYLNTPGMRLEPLRQLLILLALAILLRMLFSGAGLIATYAVADSAPPLTQSWIAFLSLRWIAGLLATLGLTWLTWLTLKIPNTQSATGILYAGVILALIGELTSQLMSAQNPFPL
>NC_013720.1|WP_012911273.1|3057334_3057847_+|hypothetical-protein
MNVTYRCPHCDQLAQASFTAESSEIVCTACNHRLQVPEGSCTNEQVTRCLVCPSQELYIRKNFPQGLGVTIVALGIIGSTIAWYYHYRFVAYGFLFGTALIDLLLYLFVGNLLQCYRCQAQYRGVPGLENHEPFNLETHERYRQQAIRLAEAERAQAASKAASGSSTPAS
>NC_013720.1|WP_012911274.1|3057990_3060990_+|FAD-binding-oxidoreductase
MDQQRERIEADLRGLLAGQVFCDDFTVQMYSTDASIYQVRPLGVVRPRGVADVRALVRYAAENSISLHARGAGTGLAGESLGPGLVVDFSQAMRRIVSLDQDTVTVQPGVVLGQLNRYLASFGKQFGPSPATGGVTTMGSVLALDNSGSNWLRHGSARRHILSMQVVLADGESMEVAKHRVTDDPVVDPSPRRRELVRRLAELIQRESRVIQSQQPKSCVNRVGYHLHDVLENGQLDLARLLVGSEGTLALITQATLRIVPIPKHRALMVVFFDRLESAVQAAMDAAALGLASCDLMDRRILTLARDTDPRYAAIIPRDAEAMLLVEQQSDDAAEVVDSLQQVAMHWQRKRRLAFDTKLVQSPDDCDALRRMARRVSPTLYRVAGPERPTPFIEDIAVPPDRLADFVVRMQNTLKAHQVTASLFAHAGHGQLHVRPFLNLADPAHVRKMHAIASELYQQVLDVGGTISGEHGCGLSRTWFVKRQCGPLYDVLREVKRIFDPQNLLNPGKVVADVPQPLVKNLRSFAAAGEIEETTISLPSETEVTVVHEPPGRMESPLELHLAWNEPLPMVASECNGCGRCRTQSPEMRMCPIFRMAPAEEASPRAKANLLQSFVAGQLDVADLTKERFKNIADLCVNCHQCRLECPAAVDIPKLMIESKAQYVAGNGLDTTDWILSRLDWVSRWGSRLMPIANWILRTRWTRWLMEKATGIAQGRKLPRLASSSFLRRAEKRRLTRPTRRVGTKVLYFVDVYANYYDVKLAESFVSVLEHNGIAVYVPAEQLQSGMAKISLGDVERARPLVAQNVAMLADAVRQGYTIVATEPSAALCLTHEYPTLLDDDDAKLVAANTKEACQYLWEMHATGRLELDFKPLNITVGHHVPCHQRALSDKSFSRLLLGLLKGVTVKPIERGCSGMAGTFGLRRDNYRTSLRAGFGLIAALRDPSIEVGVTECSSCKMQMEQGTTKPTIHPIKLLALAYGLHPEFEQLLTSRSEELVVT
>NC_013720.1|WP_012911275.1|3060986_3061247_+|MoaD/ThiS-family-protein
MSQTAVTYRIKLFAAAKQLAGRGEIEIELARGVAVGTLRAAIVAHYPELTSLVKAGRIAAGASYVDDSTLLDPSAELALIPPVSGG
>NC_013720.1|WP_012911276.1|3061253_3061685_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MIEITQSPIDSAQVLAAVQSTAAGAAVLFLGTTREFTHGKQTVRLAYEAYEPMALAELKKLAEKASSQWQLTAVAIVHRVGEVGLGEASVAIAVSSPHRDAAFAAGKWIIDTLKQDVPIWKQEHWSDGTTEWQHPGASDGSRS
>NC_013720.1|WP_012911277.1|3061681_3062683_+|GTP-3',8-cyclase-MoaA
MNDHEPLVDAFGRVHTSLRISVTDRCNIRCFYCMPDTALRFLPRSEILTFEEIERLVRILAPLGVSKLRLTGGEPLLRADLAGLVRRLSAIEGVAEVAMTTNGILLAEQAAALKAAGLSRLNISLDAMTEAVFQKISRRAGLDRVIAGIEKAREVGFENIRLNTVAIAGITEPEIVPLVSFARERQMQLRFIEFMPLDGEEQWNSEQVLTGEEIRRTITAALGPLEPAARGDASQPAMDYRFTDGTGSVGFINPVSHPFCGDCNRLRVTAEGKFRNCLFSMVEWDVRELLRSGAADQEIAARVRDCVAAKKPGHGIDDPDFLRPARAMYQIGG

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Crispr_ID: NC_013720_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013720_6

6116233-6116396

Orphan

Consensus_repeat	Method
CAGCGTCTCCACCGTCAGCCCCA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_013720_6

>merge|NC_013720|6|6116233-6116396|CRISPRCasFinder
CAGCGTCTCCAGCATCAGCCGCATCGGTATCGCCTGAATCAGCGTCTCCACCGTCAGCCCCATCTGCCCCGTCAGCCCCATCGCTACCGCCTGAACCAGCGTCTCCACCATCAGCCCCAAGACCACCGTCAGCAAACGGTCCGGCATCTCCCCCATCACCACCA

>NC_013720|6|6|6116233-6116396|CRISPRCasFinder
CAGCGTCTCCAGCATCAGCCGCA	TCGGTATCGCCTGAAT
CAGCGTCTCCACCGTCAGCCCCA	TCTGCCCCGTCAGCCCCATCGCTACCGCCTGAAC
CAGCGTCTCCACCATCAGCCCCA	AGACCACCGTCAGCAAACGGTC
CGGCATCTCCCCCATCACCACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013720.1\|WP_044185608.1\|6107901_6108339_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349964
NC_013720.1\|WP_012913598.1\|6107209_6107824_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377290
NC_013720.1\|WP_123784874.1\|6121596_6121992_-\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012913596.1\|6105140_6105620_+\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012913608.1\|6120559_6120868_-\|hypothetical-protein	unknown	unknown	unknown
NC_013720.1\|WP_012913611.1\|6122124_6123318_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349932
NC_013720.1\|WP_012913597.1\|6105647_6107090_-\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|237009
NC_013720.1\|WP_012913614.1\|6126473_6127517_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_013720.1\|WP_012913607.1\|6118576_6120352_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_013720.1\|WP_012913613.1\|6124684_6126100_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NC_013720.1\|WP_012913600.1\|6108502_6109471_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187541
NC_013720.1\|WP_012913609.1\|6121072_6121387_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|377304
NC_013720.1\|WP_044185610.1\|6117204_6118212_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_013720.1\|WP_012913601.1\|6109671_6110901_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238637
NC_013720.1\|WP_012913595.1\|6103221_6104817_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|274377
NC_013720.1\|WP_052303775.1\|6123454_6124531_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|223890
NC_013720.1\|WP_160163558.1\|6112689_6115266_-\|HTTM-domain-containing-protein	unknown	unknown	gnl\|CDD\|377454
NC_013720.1\|WP_012913615.1\|6127883_6129155_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223609
NC_013720.1\|WP_012913603.1\|6111998_6112358_-\|phosphoribosyl-ATP-diphosphatase	unknown	unknown	gnl\|CDD\|179005
NC_013720.1\|WP_012913602.1\|6110881_6111733_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781

Protein	Function_ID	Function_description	E-value
NC_013720.1\|WP_044185608.1\|6107901_6108339_-\|RNA-methyltransferase	gnl\|CDD\|349964	cd18091, SpoU-like_TRM3-like, SAM-dependent tRNA methylase related to TRM3. Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.	1.29634e-59
NC_013720.1\|WP_012913598.1\|6107209_6107824_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	1.67053e-59
NC_013720.1\|WP_012913611.1\|6122124_6123318_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349932	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides. Peptidase M20 family, PeptT (tripeptide aminopeptidase; tripeptidase)-like subfamily. This group includes bacterial tripeptidases as well as predicted tripeptidases. Peptidase T acts only on tripeptide substrates, and is thus called a tripeptidase. It catalyzes the release of N-terminal amino acids with hydrophobic side chains from tripeptides with high specificity; dipeptides, tetrapeptides or tripeptides with the N-terminus blocked are not cleaved. Tripeptidases are known to function at the final stage of proteolysis in lactococcal bacteria and release amino acids from tripeptides produced during the digestion of milk proteins such as casein.	1.1072e-70
NC_013720.1\|WP_012913597.1\|6105647_6107090_-\|protoporphyrinogen-oxidase	gnl\|CDD\|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	1.27963e-110
NC_013720.1\|WP_012913614.1\|6126473_6127517_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	6.72612e-172
NC_013720.1\|WP_012913607.1\|6118576_6120352_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_013720.1\|WP_012913613.1\|6124684_6126100_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.09378e-94
NC_013720.1\|WP_012913600.1\|6108502_6109471_-\|SDR-family-oxidoreductase	gnl\|CDD\|187541	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs. UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_013720.1\|WP_012913609.1\|6121072_6121387_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|377304	pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain. The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as Bacterioferritin-associated ferredoxin (BFD). The function of BFD is not known, but it may may be a general redox and/or regulatory component involved in the iron storage or mobilisation functions of bacterioferritin in bacteria. This domain is also found in nitrate reductase proteins in association with Nitrite and sulphite reductase 4Fe-4S domain (pfam01077), Nitrite/Sulfite reductase ferredoxin-like half domain (pfam03460) and Pyridine nucleotide-disulphide oxidoreductase (pfam00070). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N terminal domain (pfam01592) and NifU-like domain (pfam01106).	3.31253e-06
NC_013720.1\|WP_044185610.1\|6117204_6118212_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	9.38961e-134
NC_013720.1\|WP_012913601.1\|6109671_6110901_+\|amidohydrolase-family-protein	gnl\|CDD\|238637	cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	2.85344e-45
NC_013720.1\|WP_012913595.1\|6103221_6104817_-\|N-6-DNA-methylase	gnl\|CDD\|274377	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. [DNA metabolism, Restriction/modification].	1.64458e-17
NC_013720.1\|WP_052303775.1\|6123454_6124531_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|223890	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only].	2.31227e-147
NC_013720.1\|WP_160163558.1\|6112689_6115266_-\|HTTM-domain-containing-protein	gnl\|CDD\|377454	pfam05090, VKG_Carbox, Vitamin K-dependent gamma-carboxylase. Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase.	6.64672e-93
NC_013720.1\|WP_012913615.1\|6127883_6129155_-\|radical-SAM-protein	gnl\|CDD\|223609	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only].	4.02299e-30
NC_013720.1\|WP_012913603.1\|6111998_6112358_-\|phosphoribosyl-ATP-diphosphatase	gnl\|CDD\|179005	PRK00400, hisE, phosphoribosyl-ATP diphosphatase.	1.95231e-40
NC_013720.1\|WP_012913602.1\|6110881_6111733_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	2.14254e-114

>NC_013720.1|WP_160163558.1|6112689_6115266_-|HTTM-domain-containing-protein
MAKRWSDLLAAPVDGSSLAIFRMIFGAVMLWQSYRFLGPAPNGGRLQAMYAPHLFHFPYPGLEWITPLSVVGMQLVFLALGVAAVGMIVGYWYRASAIVLFLTWNYFFFSDQAFYQNHYYLISLFTAILIFAPAANCWSLDQWLRRRQGGKIEPLVAAEAVPFWSILLLRAQLFFMYFFASIAKFDVDWLTGIPIQGGCYGLIDNLSRCGIALPIDGAQLAYLLAWAGLFFDMAIGPMLILRRTRPLAIGLVFAFHGMNELMFSLAALPYLAAGTTLLFCEPDWPRRLWDRIQTRSCPAPDWKLFFVGIFAIPGIGALLGWQSSAASSPSVKPQPVSRWAAAAIALVLLLGVVVPLRHLVIEGDPDFTEEGYRFSWRMMQRTQGTFHVQFRVSPRSLSQTEVDGSSSIDWSKWSGERPSVVFVSSDANAMPWSKLPGLVLIYEPYLGIRAIGNPLSTDDATATRQLTERWKQATGRDVQARRTQSLAEALERAEVEVTAAAEAEASQAWSLQLERLALARKNAALQNPTTLQLVELIETCRALIAGRGGDRIRYQLAATHPFAIQGNQTADPFVVLDDPELVPADVWSGTVRLTKVGEPTPVLFDQSRQRTASWRDLPRIILCEDARGIFVNWNHHHELTDSQIRRMAANPGMIHVYVQHVAREWQREQGVRPRVFVDSMVSHNRRPLQPMVLPDVDLASVRLTSLGHNEWIAPLAEATDFRAPATADSSPVIAPGTATEQVVARYPGGEKKITRLNLGDGRSRVRRWSESGGLTLVAEYLHDELDGKQTKYRPDGSREAELTYAAGKLHGIVREWHPTGPLAAEVTFENGRPVGSWTTWDTAGNLATPPRDGASQLR
>NC_013720.1|WP_012913603.1|6111998_6112358_-|phosphoribosyl-ATP-diphosphatase
MTPENAASTAADTVLAQLMSVIQDRKRNPSEKSYTASLFQGGLTKIGSKILEEAHEVVEAAAEPGDTGRAHLIYESADLIYHLMVMLGYHDIPISEVEQEIARRFGMSGINEKNSRPKK
>NC_013720.1|WP_012913602.1|6110881_6111733_-|ATP-phosphoribosyltransferase
MSNLRIGVPSKGRLSELAGELLKQAGLAFRRQERSLFARVGEMPIDITFLRTDDIPVLCAEGAIDMGITGSDLIGESGVDVVTRLALGVGKCKLALCVPDDSGITSASQLAGKRVATSFPNITKNYLKQHNADVHLVTLGGSVEIMVTLGVADAIVDLVETGSTLAANRLRILDDIGRYETMLIQGKNCQNTELADRVVRRLEGVVIARAYSLLEYNIKRDKLAEAEKITPGFNSPTINSLEDQDWCSVRVMVKQGEVIGVMERLDAIGATAIMEMQITNCRL
>NC_013720.1|WP_012913601.1|6109671_6110901_+|amidohydrolase-family-protein
MPVRIAARYLLPIDAPPIERGVIEIDDAGAILAVRPHAVGEEVTDLGEVAILPAMINAHTHLEFSLLEAPLGQPRMVFGNWIAEVVAHRRARGASGVDLAAEKESALEVGLRDSAAYGVAAVGEIATHPFPFAPFASRATESPRVDAHLFLELLGLSADRVAPLLELAEAHLQQGAGQALRGLSPHAPYTVHPDLLTGAIGLSKKYEATLAMHLAESWDELELLTSHSGPMVDTLRSLGAWNPSAIPRGVTFQSYLEQLAQAHRALVIHGNLLTTSDYAILAQHKQMWVVYCPRTQSYFPHGNYPLAEMLSSGVQVTVGTDSRASTPSLSVWEELQHIAAMHENVPASTILRLGTIEAARALGLDSKLGSITSGKLAKFVAVPISETPHDHEDLYELALQQQPTIVGSW
>NC_013720.1|WP_012913600.1|6108502_6109471_-|SDR-family-oxidoreductase
MIKRILVTGGAGFLGSHLCERLVDLGHDVVCLDNFFTSQKTNVAHLLGRPNFDLIRHDITSPIWLEVDEIYNLACPAAPGHYQFNPIKTMKTSVLGMINMLGMARRCKAKVLQASTSEVYGDPEVHPQVESYRGNVNPIGIRACYDEGKRAAETLMMDYHRSNGINIRIVRIFNTYGPRMHPFDGRVVSNFIRQALTGEDLTIFGNGDQTRSFCFRDDLVEGLIRMMHASDSFTGPCNLGNPDEFTVRELAELVLELTGSKSKIVSLPLPADDPVRRRPDITLAKTNLDWQPMVPLKEGLRRTIEWFRSVNISHYRPPTPNF
>NC_013720.1|WP_044185608.1|6107901_6108339_-|RNA-methyltransferase
MLVVAPLRSQVNLSNIARTASCCGLTKIVACGQGKLDKTVARDGADELEIEVHRTLLPVLKELRKEGWFLAALEQTTDSVNMHEYQFPRKVALVIGNERHGLSDEELSLMNVCLEIPVWGLPHSYNVANATAMALYEYCRQYPRG
>NC_013720.1|WP_012913598.1|6107209_6107824_+|FMN-binding-negative-transcriptional-regulator
MYVPTSFREERDETILSFLEQFPFATLVSPTENGIVATHLPLVLDRSRRSLVGHVAHANTQWQSMFSGNASLAIFHGPHAYISPLMYDSSPAVPTWNYAAIHVTSTPELIEEPSAVAAAVETVVRRFDHDPSRWRKPEHADFLEKLLSGIVAFEMPLARVEAKFKLGQNRSAADQEKMLASLSAGDDESQNLARFIEAYRQGRS
>NC_013720.1|WP_012913597.1|6105647_6107090_-|protoporphyrinogen-oxidase
MVSQRRIAVIGGGISGLACAYYLQQQLPLAEVKLFEASSRIGGVLRTERVGDYLVEHAADMFTTKDPWALDLCRELGLESELIETNQANRHAFIVRRGKLHRVPEGFQLMSPTAAWPIIRTPLLSIAGKLRMAWETFVPRRAETTDESLASFARRRFGSEVFEQLIQPLIGGIYTADPERLSMLATMPQFVMMEQKFGSVVRATLLRKSGEKQAAGSGARYGLFLAPRDGMQRLIEAVAAKLLPGTIELDTRVDQLESVPLGERKWKFRATRGSTDSSAGNSSREEWFDDVVIALSARGAHPLLATAAPDLAAKLSQVEFASCSVVVMGVKRKDIAHPLNGFGLVCPAREGRKIIAASFASVKYPGRAPDDSVLIRTFVGGALQPELARLPDAALESLVDQELRELIGYRGPAEFTRICRWLDAMPQYHVGHLDLAKEIETLVGSLPRLALAGNSLRGVGIPFCVRSAKLAAERIVQMKA
>NC_013720.1|WP_012913596.1|6105140_6105620_+|hypothetical-protein
MPHATLFPIIASGGIVAYRAATKVVSEGLSFASQLVNPTAGDVVAEVPAASAEPNPPSDALQKKLDDLASQLTELLTRGGIDSTQPVEFSLDGIGGVDVEFDHSQASEIEQLLADQPELLAKIHEIAEQIIAETALGTAAPRDVRLTLSNKKLAGLIDP
>NC_013720.1|WP_012913595.1|6103221_6104817_-|N-6-DNA-methylase
MKQRAIERRARHDAGVVYTPATLARLLAEVSLAALHQAGIPKDRTILQIVDPACGEGALLQAASDELKRVGSPAESVHFTGYDIDPVAIHRAGSLVGNSSDVGAQLQVADALDRAAIANQQFDLVLSNPPYVSIRRLTQQASREKIDAYKRDYQSACGCFDLYVLFVERCLELVKPGGICGLLVPSRIAAMKYATACRRLVLEQTLVEVIDLSKLMMFRGAKVYPCILVIRRAPAPSEHRVRVTHIEDRADLSQRVLTLVPQSRFSTERWSLSCERFSLLEQHGDVQKLGNIATIVSGASGFTAAAMRPFVKSRNNVAAEEKGSYLPFLVSGQIDRYQLDHARGRFQNVYYDEPVLDVTQARLTLKKRELYRSQKLVVSGMSQQLEVALDEVGCALAVQVFAIWKSALDLRYLLAILNSSLMHAIFIERYAAKRLAADYFSINLAQLAELPIVVPRSDDRTAMGKYQRLILLAERRLSCDLEASRSLKQQIEHAIDEAVFELYGISSADQEVVRRGSPQASSSLDRQLRAA
>NC_013720.1|WP_044185610.1|6117204_6118212_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSSPLPVPPAADCWYLTGATAAGKSAVAIELAGRLNAEIISLDSMAVYEGMDIGTAKPSAEQRAAVPHHLLDVVPPTEDYSLSSYIDAAHEAIAKIRAAGKVPLFVGGTPLYLKSLLRGVYQGPPADWEFREQIEQELHTLPLEALHERLSVIDPLAAAKLHPHDKRRIVRALEVFRLTGVPLSHQQMQFDEGRPATAMHVFVLQWPREQLHERIQARVDQMFAAGLVDEVRGLLKRYGSLSRTACQAVGYREVLDYLRSLGEVNADDEHPRPAPMTLADCSERVKIRTRQFARRQETWFRSLSECTFVPQVHGKSPLIIADEILAMCSGSATTA
>NC_013720.1|WP_012913607.1|6118576_6120352_+|aspartate--tRNA-ligase
MLRTHTCGELRSTHVGEVVSLCGWVDKSRDHGGTLFIDLRDRYGKTQVVFEPDAGAELYAEASKLRGEDVIKVTGKVIVRPEGTRNAKLSTGDVELQVTALELLNKCNNAPFSPSQQDLPGEDLRLKYRYLDLRRSEMQKTLVLRSSIIKAMRDYFEENQFIDVETPILGRSTPEGARDYLVPSRVHNGSFYALPQSPQLYKQILMVAGYDRYVQVARCFRDEDLRADRQPEFTQLDLEMSFVTHEDVMSMIDGLMKKLAKQFLNIDLQLPLPRMTWDEAMERFGHDAPDLRYGCELIDCTDLAAKCDFRVFKETAEQGKKLRGICAPGGGKLYSRKLIDELTEFVKQFEAKGLAWFRVEDDGKLFSPIAKNFTEAQLEEFKTRMQAKPGDIMFFVADTWAVSCKALHNLRKKIGVDLKLYDPKTMNFSWVVEFPMFEYDAEEKRWVSMHHPFTAPRPQDLHMLDSDPAKSRAVAYDLVINGSEAGGGTIRIHDWQVQQKVFGLLGIDEETAKNRFGFLLEALQFGAPPHGGIALGIDRVVMLFGALDSIREVIAFPKTQKAADLMTEAPNLVDNKQLRELGIKLASADKP
>NC_013720.1|WP_012913608.1|6120559_6120868_-|hypothetical-protein
MARKVVSRKALRAESDAADALETEDGVKKAKPEKKVTKRKSRAKSAEPARMKLFWGVFNQSMKRVALYDFTQKRQAEAKAAELSASGKSPHFVGKVKEAITE
>NC_013720.1|WP_012913609.1|6121072_6121387_-|(2Fe-2S)-binding-protein
MELDDELCLCFHVTRRKVQNFIRIEKPRRPAQLSECFGAGTGCGWCRPFLERMFEQAVIGGETKVDFPTTDEYAQMRGKYVRAGGGKPPPGATPVADLPEDEVD
>NC_013720.1|WP_123784874.1|6121596_6121992_-|hypothetical-protein
MSMPQPIHVALVGATSDIVRRAKKHFRLSTPGIGAAFLATLERTSTEPIIRFEDLPNGLITLWITLDHESLSASRQRHDADLLNPCYCRGFYEHHLPESCVLVDFEKSWPASKKQLARLSEQIAAAWYATS
>NC_013720.1|WP_012913611.1|6122124_6123318_-|M20/M25/M40-family-metallo-hydrolase
MLQSPATTTPEPDLSRATKLVVELMAIPGKSGEELTVAEFVKAKLLAAGASADTIRTDNANQKSVLKGNVGNLIMKLPGTVKGPRRMLTSHMDTVPLCVGCEPVIEGKIVKSANPSTALGADNRGGVAATLVAAIELLEKKLPHPPLTFCWFIQEEIGLHGARHLQQSLLGKPAMCFNWDGGAPDKLTVGATSGYRMDIKVHGIASHAGVAPEKGVSAIAIAAMAIADLARGGWHGLIKKGKFSGTSNVGVISGGDATNVVTDEVHVRAEARSHSPKFREKIIKEITKAFQKAAKELKSSEGRRGSVEIEGRLDYETFRLDPEHACVKLAEKACLEVGRSPIRAISNGGLDANWLNAHGIPTVTLGCGQVNVHTVKEQLDLPGFHDACRIALKLATV
>NC_013720.1|WP_052303775.1|6123454_6124531_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MKHLAEPSVWNELKTWLTERGYPAYRATQVRKWVFELGASSFDEMTDLPKKLRDELAPEFTLWTGKVVTKSESPDGTEKLLVEYPGGGRIECVLLRDGDRRSICVSSQVGCAMGCVFCASGLDGVDRNLTAGEIVEQMLLLQRLLPEKERLSHIVMMGMGEPLANIDHVLEALGEATREDGLGISPRRITISTVGLPAALDKLCNLEAKYHLAVSLHAPNNELRTRLVPINKAIGIEKVIESADRYFETSGRRLTFEYVLLAGVNDHPDHAQELAELLAGRTAMLNVIPYNPVAGLPYKTPSGNAIHRFRNILVDAGINVKFRQRKGSEINAACGQLRRSTPTLLGIESPAPPSQEPI
>NC_013720.1|WP_012913613.1|6124684_6126100_+|DUF1254-domain-containing-protein
MATRLMQRFVLSLLAGISLLTATTLCGAEPASDVTINNAVEAYIYGYPLITMEMTRRVMTNSATIEGTRGPMGRFISLKQYPNAEFRDVTAPNADTLYSSAWLDLSKEPYVLTIPDESDRYFLMPMLSGWTDVFAVPGKRTTGTGPQTYAITGPNWKGELPTGMKQLQSPTSIVWILGRTYCTGTPEDYEAVHAIQSKYSIVPLSAYGKAYTPPAGAVDPAVDMKTPVRNQVNALDINAYFDLLAKLLKDNLPTAADAPMVAKLTELGIVAGEKFDASKIDPALAKSLSEVPKLAQAKIMGHFKSAGTEKNGWVFTTGTGRYGTDYLQRALITAIGLGANLPQDAVYPTSEVDSTGKPYDGTQNYVMHFPKGQTPPAKGFWSLTMYDAEYFFVKNPLNRYTLSPRDELKYNADGSLDLYIQNQSPGKDKESNWLPTPAGKFILMMRLYWPQETAPSIIDGTWVPPAVNIVK
>NC_013720.1|WP_012913614.1|6126473_6127517_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLTFRVMASRPSEFEVVAINDLTSTDMLANLLKYDSAQGRFDGTVTSDKDNLYVNGKTVRVLKETDPNKLPWGEMGVDIVIESTGRFTNRSKDGKPGYDSHVTAGAKKVVLSAPAKDKPDLTCVIGVNHNLVTADMKYISNASCTTNCLAPVAKVLEESFGIESGLMTTVHAYTNDQRVQDLAHEDAYRARAAAVNIIPSTTGAAKAVGEVLPSLKGKLTGFSLRVPVPTGSVVDLTANLKKEVTAAELNAAMKAASEKSLADGGLAGILGYCEDPIVSSDIIQDSRSSIFVPDWTCVLGDKGKFVKVMSWYDNEWGYSCRTADLVAMLAKML
>NC_013720.1|WP_012913615.1|6127883_6129155_-|radical-SAM-protein
MYLRMLGRLITETDKRLLWKLMWNFGAKGVRSVQKHKARLARGEFFPPFLYISVINSCNLRCQGCWVDVAAKQSKIEVEAISKLIGEAKAMGNSFFGILGGEPFMHPEVLEIFARHHDCYFQVFTNGQFITDEVARKLRECGNVTPLISVEGNEIVSDVRRGRDDVYSKTMQGLQNCLKHRVMTGVCTSLCQSNFDLLSEKWLDRLIEMGVFYTWFHIYRPVGPDCNADLALTPEQQLECRKFVVEMRTKKPIVIVDAYYDGEGRALCPAVTGFTHHVSPWGDIEPCPIIQFSKESIYDERPMKEVFQNSEFLRDFREITAQHTRGCVVLERPDLLKLIIDKHQAHDTTARKNAMAELEAMEIRPSQYNPGEEIPEKSWAYRLAKYFFFNDYGTYGKHFDASKWVETRKPQNPPEQQLLKIGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013720_2	2.9\|1404439\|35\|NC_013720\|CRISPRCasFinder,CRT,PILER-CR	1404439-1404473	35	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	30932-30966	10	0.714
NC_013720_3	3.8\|1409339\|35\|NC_013720\|PILER-CR	1409339-1409373	35	MN693479	Marine virus AFVG_25M465, complete genome	221-255	11	0.686
NC_013720_3	3.15\|1409328\|35\|NC_013720\|CRISPRCasFinder,CRT	1409328-1409362	35	MN693479	Marine virus AFVG_25M465, complete genome	221-255	11	0.686

1. spacer 2.9|1404439|35|NC_013720|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 10, identity: 0.714

ccgccgcgatcggaaagttcaatccgttcacgcct	CRISPR spacer
acgccgcgatccgaaagctcaatccgagtgctgcc	Protospacer
 ********** *****.********  ..*  *.

2. spacer 3.8|1409339|35|NC_013720|PILER-CR matches to MN693479 (Marine virus AFVG_25M465, complete genome) position: , mismatch: 11, identity: 0.686

gatgaggccattaccttcttttctttgccttttag	CRISPR spacer
gccataaagattacctttttttctttgccatttat	Protospacer
* .. ..  ********.*********** ****

3. spacer 3.15|1409328|35|NC_013720|CRISPRCasFinder,CRT matches to MN693479 (Marine virus AFVG_25M465, complete genome) position: , mismatch: 11, identity: 0.686

gatgaggccattaccttcttttctttgccttttag	CRISPR spacer
gccataaagattacctttttttctttgccatttat	Protospacer
* .. ..  ********.*********** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1632271 : 1641367

Canarypox_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012910251.1\|1632271_1634746_-	NAD(P)-binding protein	Q6VZE1	Canarypox_virus	2.3e-43	29.5
WP_012910252.1\|1634911_1635889_+	hypothetical protein	NA	NA	NA	NA
WP_012910253.1\|1635918_1636713_+	thymidylate synthase	A6M9A2	Geobacillus_virus	3.2e-100	64.4
WP_044183359.1\|1636869_1637337_+	dihydrofolate reductase	A0A1B2IAU3	Erwinia_phage	6.8e-18	41.3
WP_012910255.1\|1637333_1638890_+	serine hydrolase	A0A1W6JTS2	Mycobacterium_phage	8.1e-07	23.4
WP_012910256.1\|1638979_1639417_+	DUF2721 domain-containing protein	NA	NA	NA	NA
WP_012910257.1\|1639649_1640039_+	iron-sulfur cluster assembly scaffold protein	A0A2H4N7M4	Lake_Baikal_phage	6.5e-06	29.8
WP_123784901.1\|1640122_1641367_+	cysteine desulfurase	Q2XUY6	environmental_halophage	1.6e-109	46.6

DBSCAN-SWA_2

2316311 : 2392543

Agrobacterium_phage(14.29%)

protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012910763.1\|2316311_2317784_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_123784710.1\|2318008_2319922_+	hypothetical protein	NA	NA	NA	NA
WP_012910767.1\|2320611_2321706_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_012910768.1\|2322100_2322613_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012910769.1\|2322700_2324200_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012910770.1\|2324880_2325381_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_012910771.1\|2325728_2326658_+	virulence protein SciE type	NA	NA	NA	NA
WP_012910772.1\|2326650_2327154_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012910773.1\|2327219_2329097_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012910774.1\|2329060_2330098_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012910775.1\|2330287_2333035_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	3.6e-74	30.5
WP_012910776.1\|2333221_2334301_+	hypothetical protein	NA	NA	NA	NA
WP_012910777.1\|2334522_2335077_-	DUF4240 domain-containing protein	NA	NA	NA	NA
WP_012910778.1\|2335214_2338469_-	hypothetical protein	NA	NA	NA	NA
WP_012910779.1\|2338597_2341870_-	hypothetical protein	NA	NA	NA	NA
WP_012910780.1\|2342058_2343534_-	hypothetical protein	NA	NA	NA	NA
WP_012910782.1\|2344546_2346052_-	hypothetical protein	NA	NA	NA	NA
WP_012910783.1\|2346234_2346798_-	hypothetical protein	NA	NA	NA	NA
WP_012910784.1\|2346934_2347963_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_123784918.1\|2348187_2348727_+	hypothetical protein	NA	NA	NA	NA
WP_012910786.1\|2348880_2350425_+	hypothetical protein	NA	NA	NA	NA
WP_012910787.1\|2350464_2351196_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012910788.1\|2351245_2352436_-	BtaA family protein	NA	NA	NA	NA
WP_012910789.1\|2352843_2355894_+\|protease	trypsin-like serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	1.3e-11	28.8
WP_012910790.1\|2355935_2356898_-	DUF1338 domain-containing protein	NA	NA	NA	NA
WP_012910791.1\|2357224_2358565_+	acetyl ornithine aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	3.8e-37	30.5
WP_044183773.1\|2358705_2360151_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_044183775.1\|2360273_2362196_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_012910794.1\|2362427_2363309_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.2e-31	35.7
WP_012910795.1\|2363387_2364734_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_012910796.1\|2364785_2366315_-	serine/threonine protein kinase	A0A2H4UVE2	Bodo_saltans_virus	1.1e-08	24.5
WP_012910798.1\|2366651_2366948_-	hypothetical protein	NA	NA	NA	NA
WP_012910799.1\|2367299_2370047_+	hypothetical protein	NA	NA	NA	NA
WP_044181445.1\|2370059_2370617_-	hypothetical protein	NA	NA	NA	NA
WP_012910801.1\|2370888_2371116_-	SlyX family protein	NA	NA	NA	NA
WP_044181448.1\|2371397_2371703_+	hypothetical protein	NA	NA	NA	NA
WP_044181451.1\|2371895_2372123_+	hypothetical protein	NA	NA	NA	NA
WP_052303612.1\|2373010_2373874_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_012910805.1\|2374318_2374543_+	hypothetical protein	NA	NA	NA	NA
WP_123784711.1\|2374696_2375239_+	hypothetical protein	NA	NA	NA	NA
WP_012910807.1\|2375540_2375783_+	DUF2132 domain-containing protein	NA	NA	NA	NA
WP_012910810.1\|2376404_2377949_-	hypothetical protein	NA	NA	NA	NA
WP_012910811.1\|2378280_2380047_+	DUF1553 domain-containing protein	NA	NA	NA	NA
WP_012910812.1\|2380092_2381409_+	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_012910814.1\|2381929_2384083_+	hypothetical protein	NA	NA	NA	NA
WP_123784919.1\|2384236_2385313_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-42	34.7
WP_012910816.1\|2385349_2386279_-	DUF1559 domain-containing protein	NA	NA	NA	NA
WP_052303613.1\|2386456_2386924_+	hypothetical protein	NA	NA	NA	NA
WP_012910818.1\|2387063_2387474_+	hypothetical protein	NA	NA	NA	NA
WP_012910819.1\|2387582_2388725_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_012910820.1\|2389072_2389738_+	hypothetical protein	NA	NA	NA	NA
WP_012910821.1\|2389984_2392543_+\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	3.3e-122	38.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013720

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection