CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013721	Gardnerella vaginalis 409-05, complete sequence	3 crisprs	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,WYL	4	1	3	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013721_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013721_1

172791-172864

Orphan

Consensus_repeat	Method
TTTTGCCAAAATGTCGGTATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013721_1

>merge|NC_013721|1|172791-172864|CRISPRCasFinder
TTTTGCCAAAATGTCGGTATAGACGAATGTTTTTTGTGTGCTATGCCTTCATTTTGCCAAAATGTAGGTATAGA

>NC_013721|1|1|172791-172864|CRISPRCasFinder
TTTTGCCAAAATGTCGGTATAGA	CGAATGTTTTTTGTGTGCTATGCCTTCA
TTTTGCCAAAATGTAGGTATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013721.1\|WP_012913754.1\|165329_165872_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
NC_013721.1\|WP_033888553.1\|171302_171539_-\|hypothetical-protein	unknown	unknown	unknown
NC_013721.1\|WP_033888552.1\|170735_171050_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|184055
NC_013721.1\|WP_004574172.1\|165971_166553_+\|ATP-synthase-F1-subunit-delta	unknown	unknown	gnl\|CDD\|237387
NC_013721.1\|WP_012913763.1\|177923_178688_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213235
NC_013721.1\|WP_012913764.1\|178684_179410_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226663
NC_013721.1\|WP_012913755.1\|166569_168231_+\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_013721.1\|WP_012913759.1\|173007_174258_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_013721.1\|WP_004105752.1\|165035_165269_+\|ATP-synthase-F0-subunit-C	unknown	unknown	gnl\|CDD\|349414
NC_013721.1\|WP_012913758.1\|171993_172713_+\|toxin-Fic	unknown	unknown	gnl\|CDD\|225095
NC_013721.1\|WP_012913768.1\|182952_183597_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378461
NC_013721.1\|WP_012913756.1\|169245_170733_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NC_013721.1\|WP_080514457.1\|180447_180897_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378791
NC_013721.1\|WP_004574170.1\|168234_169239_+\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NC_013721.1\|WP_012913760.1\|174288_175338_+\|thiamine-biosynthesis-lipoprotein,-ApbE-family	unknown	unknown	gnl\|CDD\|224394
NC_013721.1\|WP_012913762.1\|177082_177784_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013721.1\|WP_012913757.1\|171789_171975_+\|antitoxin-VbhA-family-protein	unknown	unknown	gnl\|CDD\|212155
NC_013721.1\|WP_012913765.1\|179423_180188_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
NC_013721.1\|WP_041160458.1\|175666_177076_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013721.1\|WP_012913767.1\|181138_182857_+\|FTR1-family-iron-permease	unknown	unknown	gnl\|CDD\|223744

Protein	Function_ID	Function_description	E-value
NC_013721.1\|WP_012913754.1\|165329_165872_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	2.73137e-39
NC_013721.1\|WP_012913757.1\|171789_171975_+\|antitoxin-VbhA-family-protein	gnl\|CDD\|212155	cd11586, VbhA_like, VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.	3.13358e-13
NC_013721.1\|WP_033888552.1\|170735_171050_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|184055	PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional.	2.56627e-25
NC_013721.1\|WP_004574172.1\|165971_166553_+\|ATP-synthase-F1-subunit-delta	gnl\|CDD\|237387	PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional.	2.0254e-32
NC_013721.1\|WP_012913763.1\|177923_178688_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.24902e-97
NC_013721.1\|WP_012913764.1\|178684_179410_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226663	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown].	4.07402e-06
NC_013721.1\|WP_012913755.1\|166569_168231_+\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_013721.1\|WP_012913759.1\|173007_174258_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.00496e-26
NC_013721.1\|WP_004105752.1\|165035_165269_+\|ATP-synthase-F0-subunit-C	gnl\|CDD\|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	1.30736e-11
NC_013721.1\|WP_012913758.1\|171993_172713_+\|toxin-Fic	gnl\|CDD\|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	9.65486e-33
NC_013721.1\|WP_012913756.1\|169245_170733_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NC_013721.1\|WP_080514457.1\|180447_180897_+\|hypothetical-protein	gnl\|CDD\|378791	pfam12008, EcoR124_C, Type I restriction and modification enzyme - subunit R C terminal. This enzyme has been characterized and shown to belong to a new family of the type I class of restriction and modification enzymes. This family is involved in bacterial defense by making double strand breaks in specific double stranded DNA sequences, e.g. that of invading bacteriophages. EcoR124 is made up of three subunits, HsdR, HsdS and HsdM. The R subunit has ATPase and restriction endonuclease activity. This domain is the C terminal of the R subunit.	9.20025e-21
NC_013721.1\|WP_004574170.1\|168234_169239_+\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	2.28846e-113
NC_013721.1\|WP_012913760.1\|174288_175338_+\|thiamine-biosynthesis-lipoprotein,-ApbE-family	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	1.91904e-24
NC_013721.1\|WP_012913762.1\|177082_177784_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.16963e-68
NC_013721.1\|WP_012913768.1\|182952_183597_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|378461	pfam10634, Iron_transport, Fe2+ transport protein. This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.	1.24529e-76
NC_013721.1\|WP_012913765.1\|179423_180188_+\|ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.76429e-27
NC_013721.1\|WP_041160458.1\|175666_177076_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.63495e-36
NC_013721.1\|WP_012913767.1\|181138_182857_+\|FTR1-family-iron-permease	gnl\|CDD\|223744	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism].	9.74392e-44

>NC_013721.1|WP_012913758.1|171993_172713_+|toxin-Fic
METVFDPYLIPHTRVLKNKSNINNQIELDKYENDAVLTRCSILYENLPHAEGTVKQLQWIHHYLFQDVYDWAGQIRTIDMTKGGGEPFHPLEYMGVGIRYCEQTLKNDNLLQGLSIDEFISKLSVNYNNFNVLHPFREGNGRTQRVFWDIVARDAGYHFDWGLITQRVNDEASIQAKDANDTKLLEDMFHIITKPLNVELLAQQQFAHLVEEEYEYAPNVASILQDKDYAAYKTRYGID
>NC_013721.1|WP_012913757.1|171789_171975_+|antitoxin-VbhA-family-protein
MIDKETQRRRQENLGLAIASGKLEGNSPSKEFLYDANQYANGLISSNEFVARMRSRYGVMD
>NC_013721.1|WP_033888553.1|171302_171539_-|hypothetical-protein
MQSCILKSKDSQNLSKKKEPSHTNANRHSLSKVKKFYSFESESANLLANTRHDSYDIEGIRVIDIAQWLLETNTSFRL
>NC_013721.1|WP_033888552.1|170735_171050_+|F0F1-ATP-synthase-subunit-epsilon
MSEKQVKSLHVSVVAARHPVWEGDAKFVVIPSVNGAMGVLPGHEAVLALIDHGFVKVDDLKGVRHVFKVTDGFYSVDSDNITIAVEHSCNVDKDGNVLPNAKVI
>NC_013721.1|WP_012913756.1|169245_170733_+|F0F1-ATP-synthase-subunit-beta
MAENQTTAPPEAEQEVDPTAGRVTRVQGSVIDVEFPVGYLPDIYNALKVDINTVGNTEGDTVHEITLEVEQHLGDSTVRAVALKPTDGLVRGALVRDTGGPISVPVGDVTKGHVFDVTGNILNAKPGEHIEITERWPIHRNPPAFDQLESKTQMFETGIKVIDLLTPYVQGGKIGLFGGAGVGKTVLIQEMIQRVAQNHGGVSVFAGVGERTREGNDLIGEMADAGVLEKTALVFGQMDEPPGTRLRVPLTALTMAEYFRDVQNQDVLLFIDNIFRFTQAGSEVSTLLGRMPSAVGYQPNLADEMGALQERITSTRGHSITSLQAIYVPADDYTDPAPATTFTHLDATTELSRDIAAKGIYPAVDPLTSTSRILDPRYVGQAHYDCANRVKAILQRNKELQDIIALIGIDELGEEDKTTVSRARKIEQFLGQNFYVAEKFTGRPGSYVPADETIEAFTRICDGVYDEIPEQAFSGIGGIDDLERRWHDMQQEFGA
>NC_013721.1|WP_004574170.1|168234_169239_+|F0F1-ATP-synthase-subunit-gamma
MSSQLALKSRIISTQSLGKIFKAQEMIASSHIAKARDIALNAKPYSDAIFDAVQALVAHHEANIKHPIFGKEHAGNRVAVLALTSDRGMAGAFTSSIIRETEALLAKLDAEGKHAELYVYGRRGATYYKYRNRDVAGTWEGSTDHPDVTIAEKISDTLMDAYMTPEAEGGVSELYIVFTEFINMVRQKVRTLRMLPVELVPLKDGEEFSMHRPDYEAASGPSAALSSTSAVSAREEAVSRSNPEAVEYCFEPSPDEVLDAVLPKYIQSRIHECLLTSAASETASRQNAMHTATDNARNLVDDLTRKLNASRQASITQELTEIIGSADALNNEED
>NC_013721.1|WP_012913755.1|166569_168231_+|F0F1-ATP-synthase-subunit-alpha
MAELSIDPALIRKALDGFVDSYKPTDMPTQEVGYVVTAGDGIAHVAGLSGCMANELLTFENDTLGLAFNLDAHEIGVVILGDFTGIEEGQEVYRTGEVLSVPVGDAYLGRTVDPLGNPIDGLGAIECSERRILEAQAPDVIHRHPVDEPLSTGLKAIDAMTPIGRGQRQLIIGDRQTGKTAIAIDTIINQRANWETGDPKKQVRCIYVAIGQKGSTIASVRQSLEEAGAMKYTTIVASPASDSAGFKYIAPYTGSAIGQHWMYNGKHVLIVFDDLSKQAEAYRSISLLLRRPPGREAYPGDVFYLHSRLLERCAKLSDDLGGGSMTGLPIIETKANDVSAYIPTNVISITDGQIFLQSDLFNAGQRPAVDVGISVSRVGGAAQAKALKKVSGMLKISLARYKSLESFAMFASDLDAASKAQLTRGARLTELLKQKQFSPRAMEQEVVSVWAGTHGKLDDIPVKDVLRFESELLDYLDKGTDILQVIRDTEDFTKETEAKLDAAIDDFRRTFKTSAGKPLIVKDSLPPAENPAPVEKEQLVAKPKADSREPEGK
>NC_013721.1|WP_004574172.1|165971_166553_+|ATP-synthase-F1-subunit-delta
MPEKASRANDSLSRSSLAQAISDAHDEAQRISDELSSMMDMIDKYPELSDAITDPNRSSEDKSRLIDELIGGKAHPVVLRIMHYLVGTWHGGAESGKTGSFGGAWSGFEREAGETLVTVTTAQPLTDKQIKRLIEIYSNKLGHRAYINPIVDPNVLGGMRIQIGDQITDRTMLMQLKQLQRSARNGAWTQAVK
>NC_013721.1|WP_012913754.1|165329_165872_+|F0F1-ATP-synthase-subunit-B
MAYAAETNKLALFLPEPYDVIWSLVILVVLAAFFYKFVMPKFQAILDERAEKIEGGMAKAANVQREADELKSQIENELSQAQTDAAKTREEARAEASKIIGEARQRAEKDAAKIISEAQHSIEAQHKHAMSSLQGEVSVLAAALAGKILASKLDDDTVSSKIIDHVIDEVGDTKNSDQSK
>NC_013721.1|WP_004105752.1|165035_165269_+|ATP-synthase-F0-subunit-C
MNSIIALAGLTGNLSILGFAVATLSPAIGMAMVVSKAMESTARQPEVGNRIQLFMFIGLAFIEVLGLLGFVAYIMGS
>NC_013721.1|WP_012913759.1|173007_174258_+|Fic-family-protein
MDYKTIRKIVAMSKSNAKPCDIAEEEYCLRIDNPVTYRSGIVFDAHEIFAMCVTDLVTYMNYIANTEKAVEKAWNELPRFAQREYLMQLIAKEVQNTNIIEGVHSTRKELSKALDAANEQNNHTRFSEFTKLFLELADSNECDTSIPQTLQDIRKIYDSIMQGELEANNIPDGEIFRSGKVSIRDGANNVVHDGDATEAEIQDHLTQMLSLMNSSEVPTLIKACMCHYAFESVHPFYDGNGRTGRFLLALQLHEHLSMPTILSLSSIIYAEKSGYYAAFSKAQELFNCNDLTMFCCTMLEYIVKAQGEVFENISVQLKHIIYCMGKLRELFSEEEISKVQREVLSILLQNKLFSYNPTPMTRKQLSEYVGNAIAEQVGERKIVSALNGLIELGMVDSIGERPIRYELSKKANEMFA
>NC_013721.1|WP_012913760.1|174288_175338_+|thiamine-biosynthesis-lipoprotein,-ApbE-family
MFGNVMAIERALGTGIIISSSVPISQRVQNRIRDFIEEYESVLSRFRADSLVSRMACAEHGGEFEFPTWAQPLFAIYSEFYDATHGAFDACIGADLLALGYNNSVQFVPESAASAGKNDNSSSYSCSNYRRALPVKWADISRDDGGATLHTNKPVQLDFGAAGKGYFVDLVMQIIKEEFSDDSTANNYFPSDFDFLVNAGGDMRACFSKKNSQIKVALENPFDTTQAVGVASIASGALCASSAARRRWKVKDTNCLAADAFESNVVATHLINALDGVPSQKLSASWTYVPAKTCAFPTAYADALATALFISQESDLQKIAQTTGAEFAVMQPNHALRKTCAFPARFFAE
>NC_013721.1|WP_041160458.1|175666_177076_-|HAMP-domain-containing-histidine-kinase
MKSIPKLIQRFISIFLLSSVLIVLMNIIAFVVLIGNYAPDKEISPYSIAKETGEALQLSASGDYALSKNMSSKLTNSGAWAILIDNNTLKVVWKTENVPADIPNNYTLSDIANLSVGYIDGYPTYTGKNKDGVVVVGFPHNSFWKHTRPSWNYSLILNFPQIVLSVLFINILLILGIYLIANIKLLKSINPITKGIQRLSSGESVHIPETGALSEISSNINSASDILQIQKEQLRKRETARANWIAGVSHDIRTPLSMVMGYAGQLENSLHILEEDRKKATMIIKQSVRMKNLINDLNLASKLEYNMQPIMKKEENVVAVVRQVVVDFMNMGMQDEFSIKWETDAELTVCNINVDKDLLKRAISNLIQNSISHNENGCTIYVSVAANNNNCIICVEDNGIGVSDEKIEKLNHAPHYMICDTSTAEQRHGLGLLIVQQIIGAHNGTVDISRSKYGGFKVELTVPSKKFEL
>NC_013721.1|WP_012913762.1|177082_177784_-|response-regulator-transcription-factor
MNLNDYLLNKHLLLVDDEQGLLDMVVSILNEYGFYNITTAKSIKDAIEATQKLRPELAILDVMLPDGNGFELMKQIKQYSDCPILFLTACGEDEDKFKGFGLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIQLTAKEYDLLSALYRNAGCIVTIDALCEATWGANPFGYENSLMAHIRRIREKIELNPSQPVSLITVKGLGYKLIVE
>NC_013721.1|WP_012913763.1|177923_178688_+|ABC-transporter-ATP-binding-protein
MNNIVTTEHLTKKYKSFIAVNDVSLHIRKGSIYGFLGPNGAGKSTTMKMLLGLTAPTKGVFTIDGKQFPADRIPILKEIGSFIESPSFYANLTGRENLDIIRRILELPKSAVDDALELVGLSEFGDRLAKKYSLGMKQRLGLAGALLGRPPILILDEPTNGLDPSGIHEIRNLIKSLPDLYDCTILISSHMLSEIELIADDIGILNHGHLLFEGSLDELRHHALQSGFASDNLEDMFLSMIDEDNKIRKQSARL
>NC_013721.1|WP_012913764.1|178684_179410_+|ABC-transporter-permease-subunit
MKTLVIELKKCKRTGFIALMIAIGVMGAAYAFVNFIVRKNTLLNLPLAPMDILLTQLYGMIMVLNMFGIIVAACIIYNMEFKGNAVKKMHMLPMSVPTMYLCKFMLLTVLLLIAICIQNLALAKIGVTDLPQGTFNVSTLISFAAYSFITSMPVLSFMIFVSSRFENMWVTLGIGVAGFLSGMALASSDIVLFMASPFIVMLKPAVAMSAQPNTTVVIVSIVETILFLCSGLWAAKKLHYE
>NC_013721.1|WP_012913765.1|179423_180188_+|ABC-transporter-permease
MRFFELLKIEFTKVKRSKIVPLIFIAPLIVVGSGVASLHRYFTPEYTHAWSAMFIQSALVYSYYLLPLSMIVICVMIAGRETSNNGILKMLALPVSRYAISAAKFCVLLFYLLMEMVVFFAVFVIAGLFATSSTGVTETLPIMYLLKWCLDLFLTMIPSVIVMWAITVLFEKSMLSVGLNILLVIPGVLIANTPLWIVYPYCYSGYMVSRSLHAVTSTGLGNGFNLIPFLPCAIAISVFVFLIAITQFGKKEMR
>NC_013721.1|WP_080514457.1|180447_180897_+|hypothetical-protein
MMVDASPQLRSKKKLIEGFIAQLNENELDKLADSGGNITVYDSNGNKVSIVDCWSEYVEQKYNHDLAQLVQSEGLNDALTRKFMEKSFSVGEVSELGTDINDLMPRMSRFGAAAKARAEKKSRIVESMRNMFNEFVGLIGFSQYDSQKD
>NC_013721.1|WP_012913767.1|181138_182857_+|FTR1-family-iron-permease
MRACVKVRRIIRDSAALILAVCMLVGCIVSSFVTTIPAFATDADRSYTSWTEVSKAIDNELLQGQSEYNSGNNSGAATRFEAAYNSVYVASNMITVVRDAIGQNKVQAQTDQFQQLQTLVYQQNQGSQISAISTALAADVAQTASSLDANLKVDKPNVYAQKLRAQIKAERKKLDAAKKKNLGRNGRTWGQVAREMNVILDKSVATYKFAKGNKTQVASAVDLINEAYYQYYEKLGFEKNVMNAISGSRVSTVEYQFKECRQTMNNGGTIEQAKKFVTDLKSMLIEDAAKLDKGASSSANPFMQFITSSFGQAFVILLREGLEALLVVAAIIAYLVKSGHKNMVKYIYLGIAAGIVASLAVAALFGLLFNGSGPQQEITEGVVALFAMLMLLYTSNWMISRSSVQAWNKYISEQTTAAVSKGSLVSLALLSFLAVFREGAETVIFYQAIFAVSNGADSMIWGGFISAAAVLVVIFLLIRFASVHIPIRPFFTGTSALMSVLVVIFAGGGVHALIEGDALEGMYIQGLPTNDWLGFYPYVETIVAQIVAAIVVISLLCVSIARSRVKRAVENK
>NC_013721.1|WP_012913768.1|182952_183597_+|amino-acid-ABC-transporter-substrate-binding-protein
MKNNKMMAIAALALAGLLALAGCGSNGNSAKTDAKSQATEQKADDKADDKGGDKGFEEVPVGPHQDQNIGPLTIGAVYFQPVDMVPAGMGLKASEASFHLEADIHANQKGTKLGYGKGEFIPDLTVNYEIVDKASGESVGKGTFMQMNASDGPHYGANVKLDKAGNYKLVLSIESPEKKGWMLHVDPATGVTGRFWTEPIKATFDDWKYTPRQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013721_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013721_2

870159-870613

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTCTTTCCCGCATACGCGGGGGTGATCC	PILER-CR
GTCTTTCCCGCATACGCGGGGGTGATCC	CRISPRCasFinder
GTCTTTCCCGCATACGCGGGGGTGATCC	CRT

7 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_013721_2

>merge|NC_013721|2|870159-870613|PILER-CR,CRISPRCasFinder,CRT
GTCTTTCCCGCATACGCGGGGGTGATCCTAAAAGTATGATGCATTGAAGTAACATCTAGTGGTCTTTCCCGCATACGCGGGGGTGATCCCAAACGTGTCCATGCTTACGCCGCAAGTTTTAAGTCTTTCCCGCATACGCGGGGGTGATCCGGTGACAGGATTGTTTTTACTGACGGTCAAGGCGTCTTTCCCGCATACGCGGGGGTGATCCCGGCTCAGCCGTTAAAACTAGATCACACTTGTAGTCTTTCCCGCATACGCGGGGGTGATCCCGACCTTCAGCAGTTGCCGCAGTTCCACGCAAAGTCTTTCCCGCATACGCGGGGGTGATCCTACTTTTGGCTGGCTTGTCAACAGGAACATGGGGTCTTTCCCGCATACGCGGGGGTGATCCCAAGCTCACTAATAATGGCGAAACGCAGGGTATGTCTTTCCCGCATACGCGGGGCTCTGCG

>NC_013721|2|1|870159-870552|PILER-CR
GTCTTTCCCGCATACGCGGGGGTGATCC	TAAAAGTATGATGCATTGAAGTAACATCTAGTG
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACGTGTCCATGCTTACGCCGCAAGTTTTAA
GTCTTTCCCGCATACGCGGGGGTGATCC	GGTGACAGGATTGTTTTTACTGACGGTCAAGGC
GTCTTTCCCGCATACGCGGGGGTGATCC	CGGCTCAGCCGTTAAAACTAGATCACACTTGTA
GTCTTTCCCGCATACGCGGGGGTGATCC	CGACCTTCAGCAGTTGCCGCAGTTCCACGCAAA
GTCTTTCCCGCATACGCGGGGGTGATCC	TACTTTTGGCTGGCTTGTCAACAGGAACATGGG
GTCTTTCCCGCATACGCGGGGGTGATCC

>NC_013721|2|2|870159-870613|CRISPRCasFinder
GTCTTTCCCGCATACGCGGGGGTGATCC	TAAAAGTATGATGCATTGAAGTAACATCTAGTG
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACGTGTCCATGCTTACGCCGCAAGTTTTAA
GTCTTTCCCGCATACGCGGGGGTGATCC	GGTGACAGGATTGTTTTTACTGACGGTCAAGGC
GTCTTTCCCGCATACGCGGGGGTGATCC	CGGCTCAGCCGTTAAAACTAGATCACACTTGTA
GTCTTTCCCGCATACGCGGGGGTGATCC	CGACCTTCAGCAGTTGCCGCAGTTCCACGCAAA
GTCTTTCCCGCATACGCGGGGGTGATCC	TACTTTTGGCTGGCTTGTCAACAGGAACATGGG
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAGCTCACTAATAATGGCGAAACGCAGGGTAT
GTCTTTCCCGCATACGCGGGGCTCTGCG

>NC_013721|2|1|870159-870613|CRT
GTCTTTCCCGCATACGCGGGGGTGATCC	TAAAAGTATGATGCATTGAAGTAACATCTAGTG
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAACGTGTCCATGCTTACGCCGCAAGTTTTAA
GTCTTTCCCGCATACGCGGGGGTGATCC	GGTGACAGGATTGTTTTTACTGACGGTCAAGGC
GTCTTTCCCGCATACGCGGGGGTGATCC	CGGCTCAGCCGTTAAAACTAGATCACACTTGTA
GTCTTTCCCGCATACGCGGGGGTGATCC	CGACCTTCAGCAGTTGCCGCAGTTCCACGCAAA
GTCTTTCCCGCATACGCGGGGGTGATCC	TACTTTTGGCTGGCTTGTCAACAGGAACATGGG
GTCTTTCCCGCATACGCGGGGGTGATCC	CAAGCTCACTAATAATGGCGAAACGCAGGGTAT
GTCTTTCCCGCATACGCGGGGCTCTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013721.1\|WP_012914181.1\|874957_876334_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NC_013721.1\|WP_041160497.1\|853930_855328_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376281
NC_013721.1\|WP_012914185.1\|884862_885990_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NC_013721.1\|WP_012914177.1\|868976_870056_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|378244
NC_013721.1\|WP_012914175.1\|867350_867998_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NC_013721.1\|WP_012914172.1\|864625_865240_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_013721.1\|WP_012914170.1\|860090_862937_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_013721.1\|WP_012914186.1\|886083_887454_-\|DUF349-domain-containing-protein	unknown	unknown	gnl\|CDD\|377186
NC_013721.1\|WP_012914171.1\|862933_864604_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NC_013721.1\|WP_012914179.1\|871920_873162_+\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NC_013721.1\|WP_004108959.1\|877205_877973_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NC_013721.1\|WP_012914176.1\|868033_868975_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_013721.1\|WP_012914180.1\|873471_874956_+\|putative-allantoin-permease	unknown	unknown	gnl\|CDD\|183106
NC_013721.1\|WP_041160578.1\|878393_881837_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_013721.1\|WP_012914173.1\|865327_866416_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_013721.1\|WP_004106666.1\|876394_876592_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NC_013721.1\|WP_076611763.1\|857159_858341_+\|IS256-like-element-ISGva1-family-transposase	unknown	unknown	gnl\|CDD\|371130
NC_013721.1\|WP_004108962.1\|876592_877216_+\|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	unknown	unknown	gnl\|CDD\|236320
NC_013721.1\|WP_012914174.1\|866474_867350_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NC_013721.1\|WP_012914184.1\|881970_884859_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137

Protein	Function_ID	Function_description	E-value
NC_013721.1\|WP_012914181.1\|874957_876334_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NC_013721.1\|WP_041160497.1\|853930_855328_-\|hypothetical-protein	gnl\|CDD\|376281	pfam18862, ApeA_NTD1, ApeA N-terminal domain 1. Mostly beta strands. Fused to HEPN (Apea). Several conserved aromatic residues, abundant but poorly conserved.	5.97904e-07
NC_013721.1\|WP_012914185.1\|884862_885990_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.68663e-101
NC_013721.1\|WP_012914177.1\|868976_870056_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	1.25073e-38
NC_013721.1\|WP_012914175.1\|867350_867998_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.93088e-74
NC_013721.1\|WP_012914172.1\|864625_865240_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.73056e-34
NC_013721.1\|WP_012914170.1\|860090_862937_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.12628e-80
NC_013721.1\|WP_012914186.1\|886083_887454_-\|DUF349-domain-containing-protein	gnl\|CDD\|377186	pfam03993, DUF349, Domain of Unknown Function (DUF349). This domain is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.	2.89689e-13
NC_013721.1\|WP_012914171.1\|862933_864604_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	2.55568e-105
NC_013721.1\|WP_012914179.1\|871920_873162_+\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	2.09903e-165
NC_013721.1\|WP_004108959.1\|877205_877973_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.15215e-127
NC_013721.1\|WP_012914176.1\|868033_868975_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.76987e-129
NC_013721.1\|WP_012914180.1\|873471_874956_+\|putative-allantoin-permease	gnl\|CDD\|183106	PRK11375, PRK11375, putative allantoin permease.	0
NC_013721.1\|WP_041160578.1\|878393_881837_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.69594e-08
NC_013721.1\|WP_012914173.1\|865327_866416_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.95964e-154
NC_013721.1\|WP_004106666.1\|876394_876592_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	1.6412e-13
NC_013721.1\|WP_076611763.1\|857159_858341_+\|IS256-like-element-ISGva1-family-transposase	gnl\|CDD\|371130	pfam10551, MULE, MULE transposase domain. This domain was identified by Babu and colleagues.	2.33652e-09
NC_013721.1\|WP_004108962.1\|876592_877216_+\|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF	gnl\|CDD\|236320	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF.	8.59799e-65
NC_013721.1\|WP_012914174.1\|866474_867350_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.82403e-46
NC_013721.1\|WP_012914184.1\|881970_884859_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0

>NC_013721.1|WP_012914177.1|868976_870056_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLTVITMTNCPLSLRGDLTKWMQEIASGVYVGNFNSRVREELWKRIEDSVGNGAVTMSFSSRNEIGYDFKTIHSHREVVYSDGLPLVRIPTVDTLENDIKHGFSDAAHFHNAKKFSNIRRKNINTPSSTIENNLANENISYLSYDNASQTAKFATDNEEITCTDYWKDFIDKIDKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNEIIELTGITSNMLESYGVRLDLALKEFINFVERLPVLGYNVQFDMSFLNSALSSLDERFDHSLSINKIFDISRFVKKEKKFLKNYQLKTVLHEYNIAESVPHRALLDARLTAHLVFNLTELLKFLA
>NC_013721.1|WP_012914176.1|868033_868975_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKKFGAKKAEIPEFPRISDRVSFIYVEHAKINRLDSAVTVFDANGTIRVPAAMIGVLLLGPGTEITHRAMELLGDVGASIVWVGEHGVRNYAHGRALSRSSRLLEKQSKLVTNSRSRLNVARKMYQMRFPNENVSSYTLQQLRGREGARVRHLYREMSNKYNVQWNGRDYKVNDFESGTVVNKALSVGNVCLYGLVHSIISALGLAPGLGFVHTGHDLSLVYDIADLYKAELTIPASFEIAARCESDDDIEQLMRLKMRDCFANCNIMSRIVNDIQNLLEIPIDDQITVDVIHLWDDKELLVASGVNYSEVN
>NC_013721.1|WP_012914175.1|867350_867998_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSYLSRVEIDYKKPSSLRDLKSVGAFHNWVEQSFPDEWENHERSRKLWRVDVLHGKHYLLIVSDSKPDLQRLEMYGVSGTASSKTYDKFLGSLMNGMRMQFRVTLNPVVSISDNAETHTARGRVVPHVTYDQQMNFLLNRAQKLGFSLNENEFAIVERGYSLFTKSEKPIRLSKAVYQGILTISDADIMRKTLLEGIGKKKAYGFGMMTVIPLDN
>NC_013721.1|WP_012914174.1|866474_867350_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKSLLLKFSGPLQSWGTDSHFETRHTDYYPSKSAVIGMIAAAFGYRRSTDCDENIAKLNDLDFAVRIDQQGNLLRDYHIAAKYKANGDFEKNYVTNRYYLEDAIFLVAIGSNNEQLIYDISNALRSPYFQSSLGRRSLPPTADFILGVEDCGVIQALLTHEWLANKWSKKRFNTSKLSEASESSNESCNEVFISLYADSVLVDKAASELVKDDNTTYKIQESVRRLRKDYVNSFSNKERKFGFRYESKMEIPIEKISHNNLDSEDISSDSKHLKSVGEFIAEHDAFSGLES
>NC_013721.1|WP_012914173.1|865327_866416_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNSRLFLDIQAIQSVPPCNINRDDAGSPKTAQYGGVTRARVSSQCWKHSMREYFKEHSGDSNVGMRSKNIVKYVADKIITLKPELSEQEALDLANKTLNNAGFKTKTDKGKIIPVVNVLFFLGENQANSLAQAAINNVTDKKQLEEILKDNPPIDIALFGRMLADNPSLNEDASSQVAHAISTHAVRAEFDYYTAVDDLSVDDNAGAGMLGTIEYNSSTLYRYANVAIHEFSHQLSDNKESTINALKLFIEAFANAMPTGKVNTFANQTLPQMLVVTLREDRPVNLVSAFEDPVKAKDGYVSKSIEKLSQEYEKVQKFVHKPLASFYVTMDSSNKEIKLGVEEQSMQQLLDDFSSKVSELLQ
>NC_013721.1|WP_012914172.1|864625_865240_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MAENQNKSVEVSNAVRKIINQFIEIADTSSYRAMLAQLRHTIGKPLSQSVEIWPWILNNVPESFMDKYGEVSYQLRAVINTLQIYALYEQGVAEKSSYKDLNKSEDSVNEKSYNNMGTALRTLRSDEGVRGAMDRRFSVMITASDYESFYYYLRQLVRLLKSRTKENQQTIDYSKLARDLYLLQFEDSEKVRLSWAQEYYRFTK
>NC_013721.1|WP_012914171.1|862933_864604_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSRFNLLDEPWISVIVDEKGHNKLVSITDVFKHASEYKALAGDMKTQDFALLRILLAVLHTVFSRYDIQGNSREFDSNEDNEYYFNKETMNIWREVWNSKEFPDAVFKYLEQWHDRFYLFDDKYPFLQVLKQDIDSKKLGGKSPSEISGKNINRLISESNNKVAVFSPKDNVDNNKSSLNEAQLARWIITLQSYAGLADKTFFGTGKYKASKGWLFDLGGIYVEGENLFETLMLNCVLVGEMQSPEKRQKPCWEYSGAENIENSFYETFIDNISQLYTRWSRAIYINPDISIENPISVSIVKLPDINHKDAFIEPMTVWQYNKERENKDKYTPRKHKVEESMWRSFGLLTLQESDDGILKNHKPGIMEWLNKISKDIEGSSISLQAVSMKDDGNATSWVPTDEICDTLHIDEVVVTDNSDNGWVGRINNEVEYTRSAIGFIYRQFLLDICEIRNRNKDDATKYADKCISHVYFLVDQPFRQWLANIKPKDSMNERCAQWRNTLHNILINEAKGMLENATLRDFTGRPVVQSEKESTKNIVTAYSIFTSRLKKLSKK
>NC_013721.1|WP_012914170.1|860090_862937_+|CRISPR-associated-helicase/endonuclease-Cas3
MSCNHVVNSALWGKKREANGVMQWLPLAQHLEDTRNVIGQLWEHWLSGGQRRLIESSLSKRVDAKKLSQFLGCVHDIGKATPVFQFRKSPSNSKDLDIALKNKLATVGFTNIDYFIDTTEGSHNSHHTITGQFILSNAGVPEGICAIVGAHHGKPLNNDSVCRSNKSKYPDHYYQSETESENSKLWKKLQNDILDWALERNDFSNVNDLPEISEPAQVLLCGLVIMADWIASNEHYFPLISIEQDLIENQEERYRKGWENWLQHGSKDVWESLNCCSNVSQTYKYRFGFFPNNIQIALHDVISQSKEPGIFILESAMGSGKTEASLIAAEQLANLTGRSGVFFGLPTQATSNGMFRRVEDWLKNVNSDFQGEIGLRLVHGKAELNADYAHLQHGMQNMNDGCESTSNSNDVNNNGVILNDWFTGRKTAMLDDFVVGTVDQFLLASLKQKHLMLRHLGLSKKVVIIDEVHAYDAYMNKYLEESLIWMAAYGVPVVLLSATLPAKRRKELIKAYMCGLFGFNWRECDKSNVDFETNNYPLITYSDKNCVKQKFIENDASDNKSVSVRKITDDNLHESLVGELKSLLNNGGIAGIIVNTVKRAQEIYNACVDEFSDDEVIVIHSQFIATDRVRKEQQICNMIGKNAHRPARAIIIGTQVLEQSLDIDFDVLFTDLAPIDLLLQRAGRLHRHTIERSETFAEPILYVLGTSDRYEFDKGSESIYSKYLLMRTQYYLPNVINMSHDISRLVQIVYGDNPLELQEDLKDVYAVAKREHDSVRNSNESAAKTYRIENPESEIGEKSIVGLLTNSITNESDEFACAQVRNSGESIEVIAVKRVGSGYGTLHDCKDISQNIDDVEVAMKLAQETVGLPWMFTLNSDRVDETIAELERIRKQNQFKNWDNQPWLRGSLVLLFDENNICELSKYRVVYSEKSGIVCIKSSEEDRKELRR
>NC_013721.1|WP_076611763.1|857159_858341_+|IS256-like-element-ISGva1-family-transposase
MPRLSSKRCPICSHSMKRNGRTRKGAIRWRCTACGMSFTRKREDITHAAQFNKFIHWIMGNQTQREACPSGSDRTWRYRIEWCWNVKPELPETGEIYDYVQIDGTYLPYGWCLLTAASKGKVIALQWCNRENTEAYKSLLNNLLAPTVVVTDGNAGALSAIKQVWPETRVQRCLVHIKRNIRVLTTSKPRLQSHKALWGLAKKLVKIRTLKESDLWVNLLQKSYNQWKDWLNQKTFRKNVSEENIPSWVRSNQQWWYTHQKARKAYNLLAKQVKNGTLFTFLDPLLLESTSVPIPSTTNALEGGINSQIKKLVSIHKGLSEDHMRRAIEWWCYFNSENPSDPKQFITAECFKPKNKKIIIDNNPIGPAHLDTGFDLCKSDYHPDISIRKGTMR
>NC_013721.1|WP_041160497.1|853930_855328_-|hypothetical-protein
MEDKSLDLTTPVLGFLKTENNDSSETVVMLHDNGLKFELSVLFKELSGQIFRWFLGNNVIYVNSDAKYKTINRLPVPNILQVLSPSKTYTLVGCRYVKSSTNVMRQIGIGTITCDYIIVGSNEKQFEKITNLRTSCSNLYDWFTSGGINVNKLSDDGESIKIDIKKSSSKELCKINPMQNESNKSFISLSLAINQELRKLSKNGSIVSFEEEAFIETHSEDELNWEKHISIHNWILNLISISKLERCEFSKMEVGVENNNTCNGTTVRWFPVLHHLNAGTQNIYKKHNKQFLFDFDDINICGIEKWFELLQRYGRAMGIISHIAKEQNNLPVESVNISLGVALEDIGWEIIKSKGQKNRMNKNGGLACFMCALCAIKDEFGKYFPIDIKDFDWLKEMNDIYKKNKHDDANENMEKTPKDYEKMYRINVCFINIIRLWIGKQLGVELPTMLKRLNLNIFKYNETSI
>NC_013721.1|WP_012914179.1|871920_873162_+|allantoate-deiminase
MIDSSISAETIESAISWLAGFTEKPGEQGVTRPLYTKSWKQALFALRQRFEKLGMTVEFDQVGNLIATVEGCEKPESIIACGSHIDTVSRGGRFDGQLGIVAAYLAIKNLLTRYGKPKKSLRIICLAEEEGSRFPYVFWGSKNFFGLAQKEDVENICDSEGVPFETAMREAGFNYQTTQPKFANLEAWIELHIEQGPTLYSNHEDLGIITSIAGQHRWDIHLKGVQNHAGTTMMSYRHDAVDCMSHIIAKNLDKAKQAGDPLVLTFGRISVVPNQVNIVPGEVTFSMNCRHTDKAFLDKFLQELDEDIHETAKSYGITAQIDKWMSDDPTPLNDDIINLLKDQANKQGYAYRVMHSGAGQDTQIFAPFVKSGMIFVPSKDGISHAPEEYTDPQDAVHGVKLLRDALHSLAYED
>NC_013721.1|WP_012914180.1|873471_874956_+|putative-allantoin-permease
MQISKLLQDEPVASKNLECYRERGYTNEDLLPKPQEKRTMSALNFCTLWMQSVHNIPNYAAVGAFLLMGYSPIYVMIGIMLGAILTAIVMVANGVVGSKYGIPFSMHLRATYGKAGAQLPGFLRGVVAAICWYGIQTYIGAKALEILVGKICPEFLTFGNEIPFVGSHIPIIISFAIFWLLNLAIGLGGGKTLNKLTVVLSPLIYVVFGCMSVWAISCAGGLSAIMQYHATVQAPTNYGLGLFMMMVVNSVLGVWAAPAVSIADFTQNAKSTMAQLKGQIASFLLSYALFAFTSVVILVGGSLFYHETITDVLVIINKWDNLPAIAIATGLLLLTTVCTNATGNIVPAAYQLTALAPRFVNYKRGVVIAALVSTVLMPWKFMANITGFLNLIGMLLGPIAGVLLADYYVVKRTHIDLDQIYYDTNSSSKSAYSGTNWISYTSTILGLLFALSGQIIPLLSPLTQISWIVGCAVGFVCQILLSKVFQPTMAKERK
>NC_013721.1|WP_012914181.1|874957_876334_+|allantoinase-AllB
MNYDVVITNGLVVFDNEATKADIAIKDGKFAAFGSNFTADKTIDATDLIVVPGKVDSHVHINAPGGGVRDDWEGFVTATSAGAKGGITTMLQMPCNQIPATTDGKSFEAVLKEADGKLKVDVGQTGGLEPQNLNGGICEQDKQGVVNYKAFLGTTGDKDLQVDLYNCDDYSLYTGMQQIAKTGKILIMHCENAPITDQLGKKAHQMGARKLSEFVATRPVFTEVEAIERACLFAKETGCRIHIVHVSSPEGAQAVADARKNGVDVSCETCNHYLYFDTSELDEIGNIAKCTPPIRDKENQNGLWEKVFDGSINFIVSDHSPAPLSLKQTDDAFTAWGGIGSVQNDVDVFFDEAVQKRGMSLTQFVALNSSNSAKRFDLKGKGSIRLGYDADLAFIKPNAPYVLKAEDLEYRNKFSPYVGRTIGCQVVRTLLRGEEIYSQENGVCKDFKGKFILHPAKD
>NC_013721.1|WP_004106666.1|876394_876592_+|sulfur-carrier-protein-ThiS
MLKLNHDTVDYVENENLLELLKREGYDSTFVAIEVDGELVKRKDFETFIVKDNAKIEVFSIMGGG
>NC_013721.1|WP_004108962.1|876592_877216_+|sulfur-carrier-protein-ThiS-adenylyltransferase-ThiF
MESDDIRAKVLKRQLKEDNDLFAQQSVSILGCGGLGSNIALMLARAGVKKLYIYDFDSIEYSNLNRQNYTINEIGQHKVYATKARLNETLPYVEVEAFVQKVTPESLDEIAERSDLFIEAFDNRESKAMVLDYFMNHPNKYVITASGLSGLGDIRNVKIKHLSNVCLVGDFKSSPEEGLYLPYVSIIASLEALEALKWIKNGGNYGE
>NC_013721.1|WP_004108959.1|877205_877973_+|thiazole-synthase
MENEDYLELGGKKFTSRYILGSGKYSEELIDAAVNSAKAEMITVAIRYSEKAAGILKHIPEGVTILPNTSGCVTVEEAVNTAHIAREMGCGNFIKLEIIPDRKYLLPNNEATLQATKILADEGFTVLPYMYPDLYFAKAMRDAGAAAIMPLGSLIGSNKGLETKKFIQLIIDEIDLPVIVDAGIGVPSQAAEAMEMGAAAVMANTGVATANDIVLMAKAFKLGIEAGRAAYLAGPGRVLEKGATPSSPKRDDESK
>NC_013721.1|WP_041160578.1|878393_881837_+|tetratricopeptide-repeat-protein
MTNNMQTTENSESQEDSMLQLQESLNSLWSEGNPIDISSRAKKYVIKDFPQTNTNNQLGWVQLNKKKEYTSIGLFKEDGRKFLQLAVADSEGRIFLGSKLSYEDIQDMRPQLSFVEKNNSSLKDLHRFYGKQYKKTKITLKCAFLEAFDETYTKHTDYDMDNIVESYLNGDATVEDFLASLESSKSKSALKPEHRSKTFAGKINHFSKTFSKIRKENVFCVSNGDLVLQLSEDNGLIKIGSWISHGFGTKKTYTLEELRTKLPENLRCNLTYRNAITIAFFAALFIPDMHKSLTGFGYSNVLRRLEHEAPLGAIRRSVEDIKIAKKENLRVSGLEEYFEKLMRSTGALETERSLEAVHGAERLHMQKSQQTEANYLLWDDALEPNAALKVLKIEGAINRLYSIYDCLQINSIMGGKTCENTIKEEQASQIDMAMIKDVAFAASGSIGMQFFGNPLMDDKIRPILHMWRRAKQVKNNDKYFNKIDNDSEWSYRQRLSNLIRSVYLPFRFDAEFRSNLEDGNVAINLTTAGAALMPSVAYANEDKSWKNLNDDDKEKLATNYNLQVGMIMSTLAFGASGKVKNVSIRLDSIGLEEMVTAQNNAMNNLVNRTLNALNVMNSDAANNDSSKPKGDPKDGDIHGDPSKLQEMQQTNISNANKTNNNVISMHASASSQELNSETDTNADSNENQLSENSMDKSKEENSFAAFTTAPSIRALTTVTFSRDRFIKLIHQNGLNNPIKTYEKFNAKLNIDSHGKLNTIEPDFDVHSSRFSPHGSQEEPEFSDKIFTADQESILGTQYAQGLSIQREDLLQQAVADFHHIASELMPTTAQKAHEAMSIIESIDDPELNAQADSITRALIDETDLPNLSFTTAKRIRDIRTKAHEQFMNGDLSEALKEYENSVAQFDTMFTSSEAVPRYFNSYAERVIYNHLFATKEERTRLIPDGLFYAHMELADLLSQLNQHDEALRHLNIMVSYAPTYALSHLRLADILAQKEDWSSVIAACINALNVSLDRDDAAFAYYKLAYAEWMQNNFLIAASSYRMAQYLAPGKIEPLEMELDELLSRMRSQCKLIPSNIHEAQMALLSEDVPAWPDIEAEEIIDKAAKLTVNDGMFVIARTLCVANIRMTSNEDLSSTVQTQFLRSLNA
>NC_013721.1|WP_012914184.1|881970_884859_+|NAD-dependent-DNA-ligase-LigA
MSENSIREESTESEQLSLFYDFDEQTISHEAPKNETNSISTVKTETVTQADSKTDNKTDMHEANEWNSTIDTEKWIANLKPTDTDALALGNLQPATLTIEQAAKLWAKLAAWAQSDQIAYYVEDSPTSSDAAYDARMRALSALEAAFPTLDTPQSPTHRVGGTFSNDFTSVKHPSRMMSLDDVFSIEELHDWYNSVIRDLQWDESQPLPMTCEVKIDGLALNLIYRNGTLEQGLTRGDGVTGEDITLNVRTIEAIPTQLHSDNPDDIPEFVEIRGEVFMKWEDFRKLNDEQENAGRVAFANPRNAAAGSLRQKDPRITATRRLSFFAHGLGELRWKENTSHNNSETKFNQSDAYKLYQQWGIPVSPYTRKVTNFSEIEEMIDYYGKHRANILHALDGIVVKVDDRALQHQLGATSRAPRWAIAYKYPPEEVNTYLKDIIVQVGRTGRVTPVAVLEPVTVAGSTISRTTLHNAYEVEHKGVLIGDTVVVRKAGDVIPELVGPVLKAREGRENELRKFVMPEYCPSCGTKLAPAKEGDKDIRCPNVENCPAQLTERIIHLASRQAFDIENLGDNAALALTNPEDCRPTTAEVYCPDMDKIIIQRGATQQPYIPSPDLTLPEPQTPVLRNEAGLFSITADDLQNVMVWKEIPLVEEWKEVSKDGSFKKRTRKIGGSGLWHQVRAFWTRTIEAKLSTNYEAEGTSEKTTSLNEQWDPQYPKFQVPIDAKVVLWKNKRITRNAKTSDNAKETINVPWYTRPSETTRSMLEEIAQKGKNAALWRVLVALSIRRLGPPTARLIAANFGSLDNISKASIEELTQIDGVGPEIAQAVYNWFQQAKDPANWQFEVLKSWQEAGVVGKVEASSFAQTLVGKTIVVTGSLQGFTRDSAKEAIVSRGGKASGSVSKNTYCVILGENAGSKATKAQELGIPMLNEQQFNTLLKTGNLEEILQIANNTVPNLIAEES
>NC_013721.1|WP_012914185.1|884862_885990_+|Mrp/NBP35-family-ATP-binding-protein
MNTSELEKQVYDLLGSVIDPELGRSVTELNMVTGVHVIKKAETIDATKFAYDVEINLELTVPNCPLAEVITGRVQEAISKYPQAILIPHVNATAMSKTKLEKLVADLKAERKENPFNKAGTRTRIFAIASGKGGVGKSSITANLAATFAALGYDTAAIDADIYGFSLPRMFGVNSQPTNLNGMLMPVVAWGVKLISIGMFAGTDRAILWRGPRLQRSLEQFLSDVWWGNPDVLLLDLAPGTGDMALAVAQSLPNVELVVVTTPQPSASDVAVRSGLMALQIPVKVRGVVENMSWFENNGERLELFGSGGGKRVSEQLCNALGTNVPLLAQLPLDPALRETGEAGRPAVLTENGKLADSNLANTFIHLAKSLIKNS
>NC_013721.1|WP_012914186.1|886083_887454_-|DUF349-domain-containing-protein
MTEQSKPEETTKTTTAPKPVAPSPASFAHKTRVVAQAPTISYSEEDIKAAKTFGRVDENGTVYVTENGVEREVGQYSTGTPEEALTFYIHRYLDLKIKLDLFAKRLEASNVKAKEIDETLNTLKAELENPAAVGDIAALRARHAELAAKGNEKKEAISKARKEALEKALKERTNIVERAESLVAQMNESTNWRELNDKLRALFDEWQEHQRTTIHLNKSDADALWQRFSKARSAFSQARNSWVKEREHVRNTAKQLKEAIIAEAESLKDSKDWRETSMKFNALMDRWKKAGNAGRQHDDALWAKFREAADAFYHARQNDREKVNAGEHENLAKKEALLVKAEALLPVENEEAAKKARKALSQIQEEWDAIGFVPREDMRRIESRLNDVDKKIKAVEDAAWREADPEANARKSSFALQLEAQLEELNAAIAKETDNKRKAKLEAEKATKEQWLSAVK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013721_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013721_3

1135304-1135391

Orphan

Consensus_repeat	Method
CGCACGATTAACTCACGATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013721_3

>merge|NC_013721|3|1135304-1135391|CRISPRCasFinder
CGCACGATTAACTCACGATTAATCGAAGTAGAAACCGCGGAAAACCAACGTTCAATAGAATTTTTCGCACGATTAACTCACGATTAGA

>NC_013721|3|3|1135304-1135391|CRISPRCasFinder
CGCACGATTAACTCACGATTAAT	CGAAGTAGAAACCGCGGAAAACCAACGTTCAATAGAATTTTT
CGCACGATTAACTCACGATTAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013721.1\|WP_012914342.1\|1137465_1138542_-\|hypothetical-protein	unknown	unknown	unknown
NC_013721.1\|WP_012914344.1\|1140804_1141254_-\|DUF3021-domain-containing-protein	unknown	unknown	gnl\|CDD\|378668
NC_013721.1\|WP_012914337.1\|1132214_1134185_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NC_013721.1\|WP_012914332.1\|1123994_1124495_+\|hypothetical-protein	unknown	unknown	unknown
NC_013721.1\|WP_012914334.1\|1128385_1129135_+\|hypothetical-protein	unknown	unknown	unknown
NC_013721.1\|WP_012914339.1\|1135476_1136472_+\|glycosyl-hydrolase-family-25	unknown	unknown	gnl\|CDD\|119379
NC_013721.1\|WP_012914345.1\|1142013_1142832_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_013721.1\|WP_012914347.1\|1143315_1144725_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184641
NC_013721.1\|WP_012914346.1\|1142856_1143279_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NC_013721.1\|WP_049762332.1\|1129848_1131873_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368554
NC_013721.1\|WP_012914343.1\|1140085_1140490_+\|flavin-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|334450
NC_013721.1\|WP_012914340.1\|1136491_1136968_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377457
NC_013721.1\|WP_004106477.1\|1141365_1141875_-\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|335768
NC_013721.1\|WP_004108292.1\|1138732_1139740_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_013721.1\|WP_012914333.1\|1124860_1128382_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NC_013721.1\|WP_012914338.1\|1134194_1134887_+\|hypothetical-protein	unknown	unknown	unknown
NC_013721.1\|WP_041160520.1\|1129138_1129852_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377677
NC_013721.1\|WP_012914336.1\|1132075_1132222_+\|hypothetical-protein	unknown	unknown	unknown
NC_013721.1\|WP_041160521.1\|1131885_1132086_+\|hypothetical-protein	unknown	unknown	unknown
NC_013721.1\|WP_049762331.1\|1124623_1124860_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013721.1\|WP_012914337.1\|1132214_1134185_+\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	6.23893e-10
NC_013721.1\|WP_012914345.1\|1142013_1142832_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.20159e-38
NC_013721.1\|WP_012914340.1\|1136491_1136968_+\|phage-holin-family-protein	gnl\|CDD\|377457	pfam05105, Phage_holin_4_1, Bacteriophage holin family. Phage holins and lytic enzymes are both necessary for bacterial lysis and virus dissemination. This family also includes TcdE/UtxA involved in toxin secretion in Clostridium difficile. The 1.E.10 family is represented by Bacillus subtilis phi29 holin; 1.E.16 represents the Cph1 holin; and the 1.E.19 family is represented by the Clostridium difficile TcdE holin. Toxigenic strains of C. difficile produce two large toxins (TcdA and TcdB) encoded within a pathogenicity locus. tcdE, encoded between tcdA and tcdB, encodes a 166 aa protein which causes death to E. coli when expressed, and the structure of TcdE resembles holins. TcdE acts on the bacterial membrane. Since TcdA and TcdB lack signal peptides, they may be released via TcdE either prior to or subsequent to cell lysis.	9.23284e-12
NC_013721.1\|WP_012914339.1\|1135476_1136472_+\|glycosyl-hydrolase-family-25	gnl\|CDD\|119379	cd06417, GH25_LysA-like, LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.	2.55519e-75
NC_013721.1\|WP_012914347.1\|1143315_1144725_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184641	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NC_013721.1\|WP_012914346.1\|1142856_1143279_-\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	1.36617e-36
NC_013721.1\|WP_049762332.1\|1129848_1131873_+\|hypothetical-protein	gnl\|CDD\|368554	pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilizing protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.	7.25523e-11
NC_013721.1\|WP_012914343.1\|1140085_1140490_+\|flavin-nucleotide-binding-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	2.55698e-12
NC_013721.1\|WP_004106477.1\|1141365_1141875_-\|LytTR-family-transcriptional-regulator	gnl\|CDD\|335768	pfam04397, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	7.97416e-17
NC_013721.1\|WP_004108292.1\|1138732_1139740_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.88064e-17
NC_013721.1\|WP_012914333.1\|1124860_1128382_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	1.99906e-45
NC_013721.1\|WP_041160520.1\|1129138_1129852_+\|hypothetical-protein	gnl\|CDD\|377677	pfam06605, Prophage_tail, Prophage endopeptidase tail. This family is of prophage tail proteins that are probably acting as endopeptidases.	1.75982e-14
NC_013721.1\|WP_012914344.1\|1140804_1141254_-\|DUF3021-domain-containing-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	1.84753e-13

>NC_013721.1|WP_012914338.1|1134194_1134887_+|hypothetical-protein
MTVFQMPFYSAYENKRITPDFEPIPGWKPFANYGSSPAQIIAHCVRNKDFSVLHAGDYFDETVNGTTYRWTIAEFNHYGRGEALLVPDKLMPDNMKFSDVDNLYIDSTLDWKFKDFYRVMPDSLKPYVLEMSLPCTNVNGKVDYFDEHVFPPSEIEAFGTAKYSNESSRTYTQWACFTDNSSRIRSNRWYWLRSTHTNSNIAIPAVNTDGSAAAARIRAAGGALPCFCIG
>NC_013721.1|WP_012914337.1|1132214_1134185_+|hypothetical-protein
MSDFQNATWSVIQLDYANAFIPDVRLNGGDENGRIIRVQLLDNGVPVDDSTVEVFLCWNRQPGVLIGDRVKMEAKDSDDGRIWQVAVPVAACRMPGTVTLGFEVKRDKTIVCSRSFTAIVEQPVFDAGSPEGKSYRQELEDTAQQAKDATGKANALTDKVSHLIEQNETVSRNAQNAADAANNATSIAQQAAQQAKDAASEASQAAQNTQNVISHATEVAQQCDASKQTADQAAKRADDAVSGLKQTVQNAAADAASKVQQAVERANSATQAVDAVREKTEAANKQTETDLAALREEVVKAQRAGFTASSSAQKCDEAAQAYRNVSGEVAQAKQTSEQAVEAANQALHTAQESAAAVAQAQSVLDQVKDASETAKRVVSAVEELKQTNNAALEATRTANAQASAAADAAGKANNATSTANSAAQAANDAAGKVTQTLQESETRFKAVEQAANDAKSVAGTANSTAEAARSTAEQAQSKANDAAGSAQRAQNTANSAIEATDNNKNRIDSMESDVSSLKNSCSAAQSKANDAAQTASKAQSVADSANSAAQAAASKADSAQQAVNNIRTPIVKPQSLTGYTTPSSWDWTLTDLKELPHGGHILIYPQADSIKEYMRQQPEFEIEEQNGVRTGKITVITHQPNTNGSALKLVFVWFAD
>NC_013721.1|WP_012914336.1|1132075_1132222_+|hypothetical-protein
MNPEVKQTITNLQLMIANLSLDNARLQARVSILETQVKEVKAEETDHE
>NC_013721.1|WP_041160521.1|1131885_1132086_+|hypothetical-protein
MVDIKIVPSEPAPVLATRTIKTETHYAIASTDESPWQKEMNLKLDVIMRALGVGLNDKEKGKSDES
>NC_013721.1|WP_049762332.1|1129848_1131873_+|hypothetical-protein
MSGFDNWNPNYVPYTPPAQGGGRKANGSGKNFDAAKRRSARKALIAQNKAERAARKAERQRRAAERKAAAIVRRQQAAIRRAERKRISEQKRLERLQNAQIRKQRVEEQREARQQKHQLVLEHKIEREKAHRLEQERRAACKALSELRKKTMGGGDTQSRVSIVDVNNDLPYVEDVAATRLWGVPDGLGGMLPLDGEVIFDDISDANLLFKKGKECLDKLSKPQLTYEADVVSLGKIGFSSDAVGVGDTVQIIDTTFTPPIRVEGRVLKIEEDLLDSVDTTRITLGNIHESYTQKRRAQEQKLDELIAQSGEWNAVADGNSLYVRDLIGRLNEVLNARGGYTYFTPDEGIFVYDKGEDAHPTNAIQIGGGFWRIADSLKPNGDWDWKNVCDGHGLFADRIYTGILSDAQGRNFWNLDTGEFSLQASVKIGGKTVQEIVDDSADGVISKMNESLTQEAIFNKLTNGGQTQGIYLSGGQVYLNASYLKTGSLNAGLIKAGRIQDYANSNWWDLTTSTIHISRGEIGGMTIANNKIHNRTLSLDEYGMHFMSGNNKYGRIGITDYTDFQHKVLFFGSRSDDCLIGFGIQSNGVGIYEAALTYSPTSFGTLEQGLNFSADCSFAHHKVSKAGLASDCVYEDGANMDSRTFYLPTSMDKDGTAREWVPVTFGFRNGFVI
>NC_013721.1|WP_041160520.1|1129138_1129852_+|hypothetical-protein
MEFFCSKCDGTLVGVLNGVTMAKRCRSVDGSDTLDITCSNCPVTKGDRIVFTDGQGIGAEYLVQSVQAIRGEEQPTITIQCANSIAELNSVYVEDLRGTAATAEGRFKDLLAGTRWDVKYVENGATETAQGNYAFYHTNVLKALQATCKTFNLELYTSVELDGNHVVSRSINAVEHRGGKTPVKRFEYSRDLKSIKRTINSANVITRLYVWGKSVSQVEQKTENSKTGFEDNEGVEL
>NC_013721.1|WP_012914334.1|1128385_1129135_+|hypothetical-protein
MSFEGAVRINGSPIEELGFSVCYPGMRVSAPEPIVKFQRVPGSSIAVDTTLRDEDGNAPLKERTVTLTMCTIGHVEDIARMQANLAALTGSLMTVQCGSSPTWRGYATFKNWQPVFAFGNTAKYKCDLVLTAEPFAYGVPTTVSVSGDVHIAVDGDRPCFPHFKLKAASDEVIINCSSSSKLLTFEGLSDGATLEIESTPQARVARMNGTIVVPTLQSDFFPLIPGIVDLSVTGASGVMSFTPLFVYGV
>NC_013721.1|WP_012914333.1|1124860_1128382_+|phage-tail-tape-measure-protein
MAQNENITIRMTADIADYSAKLQTAAHLTGKFDSFVKSAGTTGEKTGRIMRALAIGAGAVAVAIGVDATRRFAEFDQAMAAVRANVTENVGELKKLETAALDAGRSGMFSATKAANAINELGKAGVSVKDIIGGGLKGALDLAAAGEMNAADAAELTASALNQFGLAGSKASHVADLLAAGANMAQGGVQDMGEALKNVGVNAHILGMSVEETVGALTLFASKGLVGSDAGTKFNAMLQNLVAPSIRAQGTIKKLGLQIYDSQGRFVGLASVAQQLHDKLGHLTQAQRNAALGRIFSNAALTTANTLYEQGAKGVEKYTKMINQQGFASKVANTQMDNLKGQLTRLGNAWDTMLIKIGSGRKGIISGMIGAVTGLVNAFAALPPEVQQAVIAITALVGIGAGLYDMYRKSSRYGGVVAKSFDFIGSKAKRLFTLLKSTKLGAGLESAFRSLSSTATDTFSSIGYKIAGASSGLSVFKAGVLGLTAVTTGVLVAALAAAAIGFVMWQAKADAAKKQTDALKDTVRNSGDVYRKLADELKNGNDGVSWFTKGTQNFTDALKTCGVSMDTFVSAVKGSKTAVTSFNKALDKTWKNSTPDRFGGITKQSVNILKEAFDQAKKSVKDAQNAMKEEQAQQKANALASSQHADALMKGAEAAAKNSGEILKVAKVEDILIAKFGASKNAINAQAEAINNNVEAMQKYYGFAMDADQALTNLDKTIRESSKSVAEAGKHWMDNTDAADKNMSALTSLAKQTFETAEAMAKNGESVENVTKAFDKGSAAFVDLAQKTGMSKDRAIALAKAWGISHDALMKLIGAAKQSNVEAKVTAKDNFSEVFKKQNLSVKNLKGGKFEITGNNKKALDAIAKVSKAKLDPKKLTLTLDKKQLQTALDAVKKMKPVEVKAKVKADTKQAKKAIADVSKAKVPDKTVKLKGDKRNLDSTMSKAKAAKVPDKTVKLKGDKRNLDSTMSKAKAAKVPDKTVKLKGNKTDFQNKFNSAQSARLRDKTVYFRANANEVWSAINAINNASVHVNARVHRANGGVVYGAGTGTSDSIPAMLSNGEYVMTAAAVQRIGVNMLDRLNYGNSIAGSEKPASNTGGDMLVNAVNGLRNDMRALNDRLVASGCVANSNVAEAMRSVFDDGVKLKLDANGREVMAGLLATPMSRELSHMIDLGR
>NC_013721.1|WP_049762331.1|1124623_1124860_+|hypothetical-protein
MLALDEYENTVLCPLCGMPSKFCHDYLKVNDTFERAKIETCFVSAMREQAMEKYLKDDRPGTTRSQTTKLVPFGVEEE
>NC_013721.1|WP_012914332.1|1123994_1124495_+|hypothetical-protein
MPIKYIQPQLTVDIVTDLVSLQKTLMLTQELVLMQQDETNAIRDGRSADEVLEEIHKTKELADRSVITITLQGLNHSKWSEYVIKNTENKEDEDTPTINVKQAALEAFPAMIVKAQYKLSKRSVSNNDVKELLPKLADSQITDIVTTIQNLNEPTTAFPKELTQLI
>NC_013721.1|WP_012914339.1|1135476_1136472_+|glycosyl-hydrolase-family-25
MALNGIDVSWYQRGINIAAVPADFVIVKATEGAWYTNPCFHAQADATLNSGKLLGIYHYISGGNAQAEMQYFVNAVKPYIGRAILALDFESGSNSAYGDTAYLQQCAQTVYNLTGVRPLLYGSQCDYGRLARVSKATNCGLWIAQYANSAHTGYQSEPWNEGSYSCAIRQYSSAGALPNYGGNLDLNKFYGDRTAWNKYAQSDHATPPPAPKPAPKPDVSPIEHDGDISSFTMHIPWGTNQDQRMGITRCGNVVTVNGCGCVVCGGGSWIHAREQVPEGFRPVSLATIRLSGNGTGSIMVKPDGSICWDGDGKNCFTHINATWITKDNQPK
>NC_013721.1|WP_012914340.1|1136491_1136968_+|phage-holin-family-protein
MNDVEIFFLELAGAVVLLDFISGFAKAVYTHSVASSKMRDGLFHKFAYVLVIAVCILFDYAQAKVDLGTHVPLVLIACAYIVITDTVSFFENVTAFNVQIANMRVVKVILSVLDCVKTYVDGQADNAINNGKHAAAIETDTELDGRGKEMNDTPTENK
>NC_013721.1|WP_012914342.1|1137465_1138542_-|hypothetical-protein
MKNFFKGISFTQVLAGSLAAVTSFLLASKIGIAGSVIGVAIGSIVSAVASQLYQNVIHASSRKLSEVNPNTSTEQSNFSNVSDSSVRSNSLENVDSKRIGDDIHMQYSSNSLQCNTDPSDDKNMAVQDARFGRTVSSQVRNPELENTRILELSKLREQHEEDMKLSEGTIPEPVPLSKVVSENYGYSSESYQNRNDHRTTIVVAVISALIAVIVTAGAVLLFTQGKGTDNIDKPKEISHEQQQNQPQPKQRLNTNTNQDHKKSHDDSNSKDANEDENDEHGNENAAGSTGGHSDNDLGSDTNNDSGTNSGDAASGNSGSGADSSDAGAGSAGSSGSTGSSNNVTSPGNGDQSGSANGN
>NC_013721.1|WP_004108292.1|1138732_1139740_-|DMT-family-transporter
MKVKYETAKSIAEPLSDKSGMPQGKSVHTAQIMLLICAAIWGGSYVSSKYALEVFPVQWLMGVRMVGACTIMAVIFFGTLRKTFTKKLIVPSLLTGITYYATLILQTEGLRSIDPGRSAFLTAAYCVITPFSAWLIVKKKPTLLGLVAAVMCVAGVGFVALKPGMLVLTLSYGDFLTLLCAAIFAFNLTFLAYYSRKYNPVTLTFGQFVVSGVLFVAGALICEPLPNFNAADHFSIFANMFYLTVVVTVVAQIMQNYSLVNLSTANASVIMCTESLFTLLFSTVLFHEHVSNMAFVGFALIFAAIITASLGEHYCDKKANCELSYKDRDFEVAKS
>NC_013721.1|WP_012914343.1|1140085_1140490_+|flavin-nucleotide-binding-protein
MATLSADMKEFIANNLAWIATVSKDGELDLGPKMSMFVLDDNHLAYHERTAGQHYKNLQDGSQLVVAVANLAKKKGYRFRGTVTLHTDDAIYEEQVRVAEEKGTKKPAAVPVMEITEIQDLTSGATAGKTIAKD
>NC_013721.1|WP_012914344.1|1140804_1141254_-|DUF3021-domain-containing-protein
MEKQVATLGKTMVKNIVKGIGIGCTIFTVMSFISSLLAHSEVGNRIASYAVATFVIGIGYGVFAIFWSNERMSNFAKFVFALVPPIAIQFIVSVIVGWISFKDEPAVICGWIAFTVILPIPIAAIIYYFEKKKAKEMNARLKALRKESK
>NC_013721.1|WP_004106477.1|1141365_1141875_-|LytTR-family-transcriptional-regulator
MKVTIAIVPPEEEQSVQLSIHNIDDELKHIIAQLQSIDSNDANVRSAENNTEINTSDKLSNNNPFIYGYINDSIIVMHEPDVIMICVENSRVIIHGDKGECVSYKRLMDFDNPQFASFVRISKSAIVNLNRIVRVDPGFGGSMSVKMDDGSVEWISRRCLGGFKKRLGM
>NC_013721.1|WP_012914345.1|1142013_1142832_-|histidine-phosphatase-family-protein
MVDFVENVASNVNNSINSAHEGIARSVMLIRHGQTPYNAQFRLQGMIDIALDESGMDQVTRSGKALRVLFGASDLEDPKDPNSTEHVRITPEEADASFVAIVSPLIRAQQTAHAFADKIGLHVHVENGVRERFFGEWEGLNRQQISEQWPEDFKAWVEGKSGELRHGAEAKQEVGERAAAAVEDWARKTGADRDLLVFSHGSCLSQTVHKLLGLDKVDPSYKTIGGMGNGRWARLIPSLNAEGSIHWRLDAYDQGPAADPTSQRLIRIWGAA
>NC_013721.1|WP_012914346.1|1142856_1143279_-|ribosome-silencing-factor
MTALESSISAIRIAAAAADRLKATNEQAFDVSDLLGITDAMLVVSASNERQVLGVAEEIEKDLYLKDNKRKALSREGLELAQWILLDFGDFVVHVMHEEARAFYRLERLWNDCPAIDLQLPEHASETEDSSKTEDSSETE
>NC_013721.1|WP_012914347.1|1143315_1144725_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MEKHDVTAAIILAAGDGTRMRSETPKVLHPFAGKTFLNRVMDAMNGVNPKKLAVVVHAQAERVAAAAISYNENVHIVNQDETPGTGRAVQCAIKDLNEIAKNETGEALKGAVLIAASDMPLLDTQTLQSLVDFHNNNNNVATVLTAVLDDATGYGRIVREANGDVLRIVEHKDANAGELAIHEVNTSVYVFDATVLCDAIADLNSQNAQGEFYLTDALEHARKFGHVGAMSAPDPLTVEGVNNRVQLAALAKAHNKRVCEKWMLEGVTILDPDTTWIEDSVTLAQDVTVLPGCFLQGCTTVASGAVVGPYTTLIDAQIDEDAVVERSRVQESHICRAANIGPWTYLRAGNVLGEESKAGAFVEMKKAHIGNGTKVPHLSYIGDADLGEHTNIGGGTITANYDGVHKNHTTIGSGAHVGAGNLFVAPVTVGDDVTTGAGSVVRHDVPADSMVYSENTQHVVENWKPAWER

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013721_2	2.2\|870248\|33\|NC_013721\|PILER-CR,CRISPRCasFinder,CRT	870248-870280	33	NC_013721.1	1126533-1126565	0	1.0
NC_013721_2	2.3\|870309\|33\|NC_013721\|PILER-CR,CRISPRCasFinder,CRT	870309-870341	33	NC_013721.1	1129274-1129306	0	1.0
NC_013721_2	2.5\|870431\|33\|NC_013721\|PILER-CR,CRISPRCasFinder,CRT	870431-870463	33	NC_013721.1	1129423-1129455	0	1.0
NC_013721_2	2.4\|870370\|33\|NC_013721\|PILER-CR,CRISPRCasFinder,CRT	870370-870402	33	NC_013721.1	1128755-1128787	1	0.97

1. spacer 2.2|870248|33|NC_013721|PILER-CR,CRISPRCasFinder,CRT matches to position: 1126533-1126565, mismatch: 0, identity: 1.0

caaacgtgtccatgcttacgccgcaagttttaa	CRISPR spacer
caaacgtgtccatgcttacgccgcaagttttaa	Protospacer
*********************************

2. spacer 2.3|870309|33|NC_013721|PILER-CR,CRISPRCasFinder,CRT matches to position: 1129274-1129306, mismatch: 0, identity: 1.0

ggtgacaggattgtttttactgacggtcaaggc	CRISPR spacer
ggtgacaggattgtttttactgacggtcaaggc	Protospacer
*********************************

3. spacer 2.5|870431|33|NC_013721|PILER-CR,CRISPRCasFinder,CRT matches to position: 1129423-1129455, mismatch: 0, identity: 1.0

cgaccttcagcagttgccgcagttccacgcaaa	CRISPR spacer
cgaccttcagcagttgccgcagttccacgcaaa	Protospacer
*********************************

4. spacer 2.4|870370|33|NC_013721|PILER-CR,CRISPRCasFinder,CRT matches to position: 1128755-1128787, mismatch: 1, identity: 0.97

cggctcagccgttaaaactagatcacacttgta	CRISPR spacer
cggctcagccgttaaaactagatcacacttata	Protospacer
******************************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013721_2	2.3\|870309\|33\|NC_013721\|PILER-CR,CRISPRCasFinder,CRT	870309-870341	33	MN148435	Shigella phage SGF2, complete genome	34778-34810	7	0.788
NC_013721_2	2.3\|870309\|33\|NC_013721\|PILER-CR,CRISPRCasFinder,CRT	870309-870341	33	NC_010696	Erwinia tasmaniensis Et1/99 plasmid pET35, complete sequence	18653-18685	10	0.697

1. spacer 2.3|870309|33|NC_013721|PILER-CR,CRISPRCasFinder,CRT matches to MN148435 (Shigella phage SGF2, complete genome) position: , mismatch: 7, identity: 0.788

ggtgacaggattgtttttactgacggtcaaggc---	CRISPR spacer
gatgacattattgtttttactgacgg---aggtttt	Protospacer
*.*****  *****************   ***.

2. spacer 2.3|870309|33|NC_013721|PILER-CR,CRISPRCasFinder,CRT matches to NC_010696 (Erwinia tasmaniensis Et1/99 plasmid pET35, complete sequence) position: , mismatch: 10, identity: 0.697

ggtgacaggattgtttttactgacggtcaaggc	CRISPR spacer
taacacaggattgtttttgctaacggtctgcgt	Protospacer
 .  **************.**.****** . *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

193640 : 201222

Burkholderia_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012913778.1\|193640_193928_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	4.8e-14	46.0
WP_041160459.1\|194139_194733_-	hypothetical protein	NA	NA	NA	NA
WP_012913780.1\|195104_196184_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	6.5e-112	61.0
WP_041160546.1\|196266_198474_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.8e-186	47.7
WP_004109846.1\|198577_199078_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	2.7e-12	31.6
WP_012913782.1\|199081_199342_-	glutaredoxin-like protein NrdH	A0A2H4J2C2	uncultured_Caudovirales_phage	2.2e-10	40.0
WP_004109841.1\|199767_201222_+	NADP-dependent phosphogluconate dehydrogenase	M1T2E7	Synechococcus_phage	3.2e-29	29.8

DBSCAN-SWA_2

987303 : 996636

Streptococcus_phage(42.86%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000417519.1\|987303_988521_+	macrolide efflux MFS transporter Mef(A)	A0A2K5B2B5	Erysipelothrix_phage	5.1e-198	90.6
WP_000420313.1\|988640_990104_+	ABC-F type ribosomal protection protein Msr(D)	A0A1B0RXA0	Streptococcus_phage	3.7e-251	97.3
WP_004121959.1\|990221_990512_-	hypothetical protein	A0A1B0RX98	Streptococcus_phage	1.7e-11	82.5
WP_004121956.1\|990511_990724_-	helix-turn-helix transcriptional regulator	A0A2K5B261	Erysipelothrix_phage	8.7e-05	38.6
WP_004121944.1\|991035_993360_+	nucleoside triphosphatase	A0A2H4J4H0	uncultured_Caudovirales_phage	2.1e-99	30.9
WP_004121942.1\|993778_994726_+\|capsid	phage major capsid protein	Q6DMU0	Streptococcus_phage	1.7e-39	31.6
WP_004121940.1\|994744_994912_+	hypothetical protein	NA	NA	NA	NA
WP_012914238.1\|994983_996636_+	recombinase family protein	E5DV73	Deep-sea_thermophilic_phage	4.3e-22	23.4

DBSCAN-SWA_3

1115132 : 1128382

Streptomyces_phage(40.0%)

tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012914320.1\|1115132_1115657_+	hypothetical protein	A0A162E1R7	Tsukamurella_phage	2.3e-06	33.6
WP_012914321.1\|1115649_1116777_+	hypothetical protein	A0A1C9EHW4	Gordonia_phage	5.2e-112	53.8
WP_041160517.1\|1116773_1117433_+\|terminase	terminase	A0A1C9EHV3	Gordonia_phage	2.3e-56	50.5
WP_012914323.1\|1117429_1118806_+\|portal	phage portal protein	D7NW49	Streptomyces_phage	3.9e-69	33.8
WP_012914324.1\|1118795_1119941_+	hypothetical protein	A0A2H5BLR1	Streptomyces_phage	1.8e-24	33.6
WP_012914325.1\|1119968_1120592_+	hypothetical protein	D7NW52	Streptomyces_phage	2.8e-11	34.2
WP_012914326.1\|1120609_1121464_+	hypothetical protein	F8UBM2	Clostridium_phage	5.6e-50	41.0
WP_012914327.1\|1121466_1122045_+	hypothetical protein	D7NW55	Streptomyces_phage	1.0e-18	35.8
WP_012914328.1\|1122041_1122506_+	hypothetical protein	NA	NA	NA	NA
WP_012914329.1\|1122492_1122864_+	hypothetical protein	NA	NA	NA	NA
WP_012914330.1\|1122860_1123262_+	hypothetical protein	NA	NA	NA	NA
WP_012914331.1\|1123270_1123852_+	hypothetical protein	I3NL93	Bifidobacterium_phage	2.4e-12	31.4
WP_012914332.1\|1123994_1124495_+	hypothetical protein	NA	NA	NA	NA
WP_049762331.1\|1124623_1124860_+	hypothetical protein	NA	NA	NA	NA
WP_012914333.1\|1124860_1128382_+\|tail	phage tail tape measure protein	I3NL90	Bifidobacterium_phage	1.7e-84	34.4

Anti-CRISPR protein detection

Acr_ID: NC_013721.1|WP_049762331.1|1124623_1124860_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_013721.1|WP_049762331.1|1124623_1124860_+|hypothetical-protein

1124623_1124860_+

78 aa aa

1115132-1128382

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_013721_2	TypeI-E	2.2\|870248\|33\|NC_013721\|PILER-CR,CRISPRCasFinder,CRT	870248-870280	33	1126565-1126533	0

1. spacer 2.2|870248|33|NC_013721|PILER-CR,CRISPRCasFinder,CRT matches to NC_013721 position: 1126565-1126533, mismatch: 0

caaacgtgtccatgcttacgccgcaagttttaa	CRISPR spacer
caaacgtgtccatgcttacgccgcaagttttaa	Protospacer
*********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013721

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information