CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	4 crisprs	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	0	8	6	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_013740_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013740_1

100578-100685

Orphan

Consensus_repeat	Method
GCGTGCGGCCCCTACAGGTTTACACAATCAAAAGAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013740_1

>merge|NC_013740|1|100578-100685|CRISPRCasFinder
GCGTGCGGCCCCTACAGGTTTACACAATCAAAAGAACCCATTGTACCCGGCAAAAAAATCGCCGTGGCATGCGTGCGGCCCCTACAGGTTTACACGATCAAAAGAACC

>NC_013740|1|1|100578-100685|CRISPRCasFinder
GCGTGCGGCCCCTACAGGTTTACACAATCAAAAGAACC	CATTGTACCCGGCAAAAAAATCGCCGTGGCAT
GCGTGCGGCCCCTACAGGTTTACACGATCAAAAGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013740.1\|WP_012937483.1\|103870_105160_+\|Na+/H+-antiporter-NhaC-like-protein	unknown	unknown	gnl\|CDD\|224671
NC_013740.1\|WP_012937480.1\|99169_100489_+\|acetyl-CoA-hydrolase	unknown	unknown	gnl\|CDD\|188463
NC_013740.1\|WP_012937487.1\|107704_108607_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238499
NC_013740.1\|WP_012937478.1\|96913_98599_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|376416
NC_013740.1\|WP_012937472.1\|91637_93050_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|308194
NC_013740.1\|WP_012937484.1\|105454_105898_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_013740.1\|WP_012937473.1\|93180_94140_+\|hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240650
NC_013740.1\|WP_012937471.1\|90277_91606_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NC_013740.1\|WP_012937490.1\|110262_111429_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182539
NC_013740.1\|WP_012937475.1\|94384_95530_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181526
NC_013740.1\|WP_012937474.1\|94187_94385_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236597
NC_013740.1\|WP_012937479.1\|98657_99011_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319912
NC_013740.1\|WP_012937486.1\|106695_107370_-\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NC_013740.1\|WP_012937477.1\|96347_96878_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|181462
NC_013740.1\|WP_012937489.1\|109542_110259_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013740.1\|WP_012937485.1\|105890_106703_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NC_013740.1\|WP_012937476.1\|95529_96345_+\|2-oxoacid-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|235604
NC_013740.1\|WP_012937482.1\|102231_103752_+\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NC_013740.1\|WP_041666065.1\|108999_109284_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_012937481.1\|100900_102214_+\|DUF2088-domain-containing-protein	unknown	unknown	gnl\|CDD\|370728

Protein	Function_ID	Function_description	E-value
NC_013740.1\|WP_012937483.1\|103870_105160_+\|Na+/H+-antiporter-NhaC-like-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	7.68751e-54
NC_013740.1\|WP_012937480.1\|99169_100489_+\|acetyl-CoA-hydrolase	gnl\|CDD\|188463	TIGR03948, hypothetical_protein_FAEPRAM212_02812, butyryl-CoA:acetate CoA-transferase. This enzyme represents one of at least two mechanisms for reclaiming CoA from butyryl-CoA at the end of butyrate biosynthesis (an important process performed by some colonic bacteria), namely transfer of CoA to acetate. An alternate mechanism transfers the butyrate onto inorganic phosphate, after which butyrate kinase transfers the phosphate onto ADP, creating ATP. [Energy metabolism, Fermentation].	6.66293e-127
NC_013740.1\|WP_012937487.1\|107704_108607_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	1.24569e-111
NC_013740.1\|WP_012937478.1\|96913_98599_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|376416	pfam00920, ILVD_EDD, Dehydratase family.	0
NC_013740.1\|WP_012937472.1\|91637_93050_+\|gluconate-permease	gnl\|CDD\|308194	pfam02447, GntP_permease, GntP family permease. This is a family of integral membrane permeases that are involved in gluconate uptake. E. coli contains several members of this family including GntU, a low affinity transporter, and GntT, a high affinity transporter.	3.97623e-96
NC_013740.1\|WP_012937484.1\|105454_105898_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.44294e-35
NC_013740.1\|WP_012937473.1\|93180_94140_+\|hydroxyacid-dehydrogenase	gnl\|CDD\|240650	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	2.70738e-135
NC_013740.1\|WP_012937471.1\|90277_91606_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NC_013740.1\|WP_012937475.1\|94384_95530_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl\|CDD\|181526	PRK08659, PRK08659, 2-oxoacid:acceptor oxidoreductase subunit alpha.	0
NC_013740.1\|WP_012937474.1\|94187_94385_+\|4Fe-4S-binding-protein	gnl\|CDD\|236597	PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed.	2.04326e-12
NC_013740.1\|WP_012937479.1\|98657_99011_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	0.000284462
NC_013740.1\|WP_012937486.1\|106695_107370_-\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	1.85172e-65
NC_013740.1\|WP_012937477.1\|96347_96878_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	gnl\|CDD\|181462	PRK08537, PRK08537, 2-oxoacid:ferredoxin oxidoreductase subunit gamma.	1.48741e-33
NC_013740.1\|WP_012937489.1\|109542_110259_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.12183e-87
NC_013740.1\|WP_012937485.1\|105890_106703_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.20647e-53
NC_013740.1\|WP_012937476.1\|95529_96345_+\|2-oxoacid-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|235604	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated.	1.99947e-111
NC_013740.1\|WP_012937482.1\|102231_103752_+\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NC_013740.1\|WP_012937490.1\|110262_111429_+\|HAMP-domain-containing-protein	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	2.20755e-68
NC_013740.1\|WP_012937481.1\|100900_102214_+\|DUF2088-domain-containing-protein	gnl\|CDD\|370728	pfam09861, DUF2088, Domain of unknown function (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.	0.000967999

>NC_013740.1|WP_012937480.1|99169_100489_+|acetyl-CoA-hydrolase
MLEKYRNKVKTPAEAAKAVQSGDWVDFGFGNGFPELMDEALAARKEELQDVKIRGGLVYRPIIHTIDCDPEMKHFQYYSWHLGGYERKMFTARRLHFVPMMLRLLPEMYRDYLTVDVAVVPVSRPDANGYCGLGLASYCWKTIMKKARTVIFEINEHMPTLQGVDGSHRVSLDEADIIVEGEHAPLCTSGYRTPSEADLQIARNVVAEIPNGATLSLGVGTIPFTIAQILAQSDREDLGCHTGTISDAFLALYKAGKLTNDRKEDQTGLATWNLASGSQELYDWLQEKPELFYPAEVDYVHNPRIMEKISNYISINGGVQLDLMGQENAESIGTRQLSGVGGQLDFLEGAFLSHGGAGYICIESSRVDKKGVRHSNIVPAIAAGSSIAGPRALIQNVATEFGVAHLTGLSLKERAQAMIAVAHPDFRAELQEYADKTFC
>NC_013740.1|WP_012937479.1|98657_99011_+|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MAEKITYKLKHVGINCENEKEAKQLVSLLCSLFDLEPGNENDTHIFVSNMFEVMKDSTRGHHGHIALQTPDVELAMADLARKGISFKEETIRRDADGKVIFVYLDGDIGGFSFHLTK
>NC_013740.1|WP_012937478.1|96913_98599_+|dihydroxy-acid-dehydratase
MSGNELNYKNNRSGIMVNGVGRSGNRALLYSMGLEEDDFRKPIIGIANSFSELVPGHIHLRDLARDVSDGILEAGGIPREFDTIALCDGLCQGHSGMRYSLPSREIIADSVEAVVEGNQLDAVVMLASCDKIVPGMILAAARMKIPAIIVTGGPMLAGNCDGYTNICLSNLREFVGQYQVGKMSYEELRKMEMASLPTVGSCSMMGTANTMSCLAEVLGLTLPRMGTSPAVSSEKRRLARASGKRIVAMVKEGITTQDILTRSALLDAVKAVMAMGASTNSVLHLMAIAHEAHVDLTLEDFDRVSREVPYLCNLRPSGQYAVDVLHANGGVPAVLRAIEDKLDDHITVTGHTLKENIAAQPLVENDVIFPRSKPKNKEGGIAILKGNLAPDGAVVKASGVKPNMHVFTGKARVFDSMEDSITAIEAGEIQPGTVIVLRYEGPKGGPGMREMFLVTALLVGRGMDESTALVTDGRFSGSTRGPCIGHVSPEAAAGGPIGLIQDGDVIHIDIPNRSLTMDVSDAELAERKKHFKPVVKATSPMLKKYAALVSSADKGAVLQVK
>NC_013740.1|WP_012937477.1|96347_96878_+|2-oxoacid:acceptor-oxidoreductase-family-protein
MKKEIVLSGVGGQGVVSVGEVMGLASLNEENINATMSASYGAEARGTFTKTDVVLSDGLVGYPNVAVPDLILCLAQVAYDRYVDKFTDDTLVFYDSDEVTPKEGAKGTAIGHPFRKLAVELGSIQSANFIALGAMMKKTGLLKPESVEQGIAKRFAGKQKVIDSNRKAFEKGLTLE
>NC_013740.1|WP_012937476.1|95529_96345_+|2-oxoacid-ferredoxin-oxidoreductase-subunit-beta
MKSYKDYMLFDKLPQTWCAGCSHGIVLQSIAAVMAELEVDKHDMALVSGIGCFGRVDDYLDINCMHVTHGRALAAATGVALGNPDLHVLVTMGDGDGTTIGGNHLIHAARRNINVTAIISNNYNYGQTGGQYSGTTPTHSITQTSPYGHIEQNFDVCKLAIAAGASYVGRATAYNPVMLRKLIKEGMQVKGFSLIEVMSACPTHYGKFNKLGAAAHMMQLMNEQSVTVAQAAKMSEEELQGKIVVGCLKNAPRDDYYTDYKKIIDANRIEG
>NC_013740.1|WP_012937475.1|94384_95530_+|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MAKVEKKFMEGNEAMTAGAIAAGARFFAGYPISPSSEVAKAAAKELPRHGGIYIQMEDELSSMAALLGASLAGKKAFTATSGPGFSLMQENLGLGIMSELPCVLYNVQRSGPSTGAATKPAQGDLMQAKYGTHGDHSIIAISPSSVQDCYDLSITAFNLAEKYRTPVIFLADEVVGHLRETLTIREPEPDEIINRKAPATKNQADFRPYDYSSTEVAPMVAVGDRDLLMRTTGSTHDEKGEFCPSPENIDRVTHYLVDKIEKHVDDITITRKYQMDDADVVLISFGCSVRSSLSAIEILRKKGVKAGLLQLVTVWPMPEKEIRAALQQAKIVIVPELNLGQLAGEVRKYNDYGCKVLQANRTDGILLTPQQIVDVYEESEK
>NC_013740.1|WP_012937474.1|94187_94385_+|4Fe-4S-binding-protein
MSKDITININEKLCKQCGICSALCPKQVLEQSYGSYPKVAHLDACIGCKLCALRCPDFAIEVEVK
>NC_013740.1|WP_012937473.1|93180_94140_+|hydroxyacid-dehydrogenase
MYKILVPKALKPVAREFLTKKGYELVSPEATDEASLAKAIADVDAVIARTEKYTKTVVDAGKNLKIIARYGIGYENIDLAACDAKNVTVTLARGCNTYSVAEHAISLMLACFRQIPQLNQEVRKGNWKSRDAIETHEARYKTFGSIGIGPIGLEAVKIAHFGFQMRILVYDKFVDRSQFPDWVEFVDTLDELMEQADVVSPHLPLNKGTFHIIDEEAISHMKPTAVLLNVSRGAIWDEKAVYKALKEGRIAAAGADVFETEPPTPDMPLFSLPNYIGCPHTAALTEEAVDAVAMNCAQAIDDLLNGREPKFIINHPEKA
>NC_013740.1|WP_012937472.1|91637_93050_+|gluconate-permease
MAESTRMVLGLGLGILVMIILVAKTKVHSFIAMLIAALITGIIGGMPILTVKVAGKTTVGVINAISTGFGNTLSSTGIIIGLGVMMGAILEKSGAAEKLAISFIKLVGKGNEEWALGVTGWVVSIPVFADSAVVMLCPLCKAISKVTGKSVIGLGLSLACGLQLTHVLVPPTPGPLTAAGMLGIDVGQMIAGGAILSIPMLLVIVPYCKWIGKKIYQVVNEDDEYVRPQQGEQVKLASTELLDQFLNRTDLPGLAISAAPIVVPLVMILTKTVLDLMGADKSAGYYYFVALFGSPIVALMIGTLIAIYGLVSDRDTKEVLKMMDDGIKDTGIIMLITGVGGSLGYVVRASGIGNVLGQMVVTWPVPAVLIPFCIAALMRICLGSATVAIVTSASLTMPLMSQLTISPLLMALSCCVGAISFGYFTDSGFWVWNGMFGVSDLKEQLQCKTAVSMIMAGVGLLELLVAQYFI
>NC_013740.1|WP_012937471.1|90277_91606_+|glucarate-dehydratase
MTPVITKMEVYPVAGKDSMLLNLSGGHAPYFTRNIVILTDSEGNTGVGEVPGGPKITNALEDVKDIVVGTKISDYRNTLLAVKAHLDKNGEEDVRGNQTFDLRTGVHVMTAIEAPCLDLLGKFLDMPVCRLLGNGQQRDFVRFLGYLFFVGDRNKTDLPYDHEEDSDCEWYRLRNEEALDADSVVALCRAAKEKYGFKDFKLKGGVLPGDEEMKVIKAMKKAFPDARMDLDPNGAWKLDDAVRYVSDMHGILTYCEDPCGAEGVYSGREIMSEFRRRTGFPTATNMIATDWRQVGHSLESQAVDIILADPHFWTMNGSVRVAQMCHEFGYTWGSHSNNHFDISLAMCVQVGAAVPGFYNALDTHWIWQEGRERLTREPMQIVDGGIKVPDKPGLGVEVDREQVLKAHELYKKHCLGVRNDAITMQYLIPGWKFDAKSPCLVR
>NC_013740.1|WP_012937481.1|100900_102214_+|DUF2088-domain-containing-protein
MRITTRGGVVSQLLENVPLPRMFRARQTFPRPVLTPEEIPGVVRAEMSREPFVSKLQPGMTIAITAGSRGIANVALITRSIVEFCKERGTRPFIVPAMGSHGGATAEGQREILAGYGITEEAMGCEIRSSMETVYLGMSQSGRPVYMDKNAYEADGIIVSCRLKPHNAFRGKVESGPCKMMAVGLGKQKGAENVHADGMGKIAEHIPSMAQVFLEKAPILFAIPSIENAYDETCKIVAIDTPHLIEEEAEWLKFAFANMPSLLVKEADVLVVDEIGKNYSGTGVDPNIAGTFSTEYAHGGLKVQRTCFLDLSEASHGNALGIGLANCITARLFNKIDMDAMYPNIVTNTVFKSGMIPFVVPTDKEAIQLCIRTTNGVDRDPAKVRVVRIPNTSHIGTVMLSESYYEAVRAGKYPHLEALDEPAPLAFDDNGTLLTKI
>NC_013740.1|WP_012937482.1|102231_103752_+|galactarate-dehydratase
MTAPLVIRVKEKDNVAIAVHDLPVGTEVLPGVVSLQPIPQAHKIALTDIPKGGEIIRYGVVLGYARDDIPKGSWINEHMLDLPESPALHDLPYATHIVPPEELPDPVRTTWWGYRNKKGPAGTRNLLGVVTTVQCAAGVVNVAVDRIRRELLPKYPHVDDVVAVNHPYGCGVAINAPMAKIPIRAVRNLIRHPNFGGEIMVIGLGCEKLTYDRLLEPEEINPDNCLTLQDCHGHDAMMQAILDMAEKKLQRLEKRRREELPLSELVVGMQCGGSDAFSGLTANPSAGYAADMLVKGGGTVMFSEVTEVRDGVPMLAARCVNREVRDKLAAEMKWYDDYLAEGGVDRDANPTPGNKKGGLANIVEKAMGSIAKSGTSPIVEVLSPAEKPTKHGLIYAATPASDIVCGPSQLASGIGLQVFMTGRGTPYGLAIAPVIKVCSRNEMKDNWFDMIDVSAGGVATGEATIPEVGTEIFNFILDVASGKKKPYSDQYGFHNDLCIFNPAPIT
>NC_013740.1|WP_012937483.1|103870_105160_+|Na+/H+-antiporter-NhaC-like-protein
MENLILGAFCLILFFFIFTGLPLLGALALGFLLFFGYGLYRGHSFGAVLKMAWQGVLSVKTIFLVFILIGMLTAAWRASGTIGYIIALAVRFIRPSVFLLLTFWLNCAVSFLLGTSFGTAATMGVITLSIGETLGISPLYSGGAILSGTYFGDRMSPVSTSALLVSVLTGTDIYRNIGNMARFTLVPFGLASLFYLVLGLWLPGIGQVGAMVSGLYDIYNFTPWLVLPAVSILTLSFFRVSVKKNMAVSIVCALALCHFVQGWPWWHLLKILVTGYHLSDPEYSGMLSGGGITSMVRVASIVCLSASFGGIFKGTGLLKGIESLFQHLKKKVGTYLSIILAALFTGMVSCNQTLSIVLTHQLCSSFVQDREQLALDLENTAVVISPLIPWSIACATILDTTGAPHTSIALAVYLFLLPVWGLVKSRSAA
>NC_013740.1|WP_012937484.1|105454_105898_-|transcriptional-repressor
MDKKGSPLDARQLIRRAGLKCTQARLQVLAMLLDQREVLSADEIYQKLLQTGATLNFSTVYRILESFTEKKLTEKVLLPQSRKYGFLLYTLSHTHHLICLGCHKVVNIDGCPLHGFEEDLAQKTHFEIVGHYLELYGYCEECRKKAL
>NC_013740.1|WP_012937485.1|105890_106703_-|metal-ABC-transporter-permease
MFEYAFMRNALAVSLLISLICPLIGTFLVLRRYSMIGDALSHASLAGVATGLLFHANPILSAFCLTSFFGLLIEVLREKFRRYAELTLVIVLSLSVGIAITIISSGLVHANVDSFLFGSILTVSQGEVTTVAILTVISLLAIFGLFPQLVLLSFDEDGARILGVKARAINYVFSILVAATISVSIRIVGILVISSLIALPVATALQLHQGFKKTMALAVLFSFLDVMAGLVVSYYLGAAPGGITAIVSVVLLLLVLLFQSRSQKRQVRHG
>NC_013740.1|WP_012937486.1|106695_107370_-|metal-ABC-transporter-ATP-binding-protein
MLQISHLSFAYEQGPYLLHDLSMEIHDGDYVAIVGENGSGKSTLVKLILGLLTPSSGTISTTFRRPAYVPQPTDMVNKQFPITVREVLDYTRQVLRIKDREATDRALAKMHIEPLQDHLIGALSGGQYQKVMIAKALLGKPDLMIFDEPSTGMDLKSQDDLYPLIHQLNETQGITVVTVEHNLRYAAHNASSFFHVVRGQGHFCTPQEYIREYLAENGGDCAHV
>NC_013740.1|WP_012937487.1|107704_108607_+|zinc-ABC-transporter-substrate-binding-protein
MKRIVLLLLAGLLTLFAGCGGKKAPAKTAEGRLPVVASFYAMKEITEAIGGDKVAVTTLIPEGTEPHEFQPTTRSMKDLSRARVLVLQGLGMEPWAEDMVKAAENPGLVQVTAARDVAPIANEDAEEIREHGQYDPHAWLSPSCAQVEAAAIVRGLSQADPDNAAYYQANGEKFIGRLRQLEKTYKEKFQSVPRKDFVTGHAAFAYLCRDFGLEQNSVEGVFASGEPNARQLAKLVEYCREHQVNTIFTEAAVSPKTSQALAREVGAKVVPIHTLEGGEGEGNYLQQMEENLARIYESLK
>NC_013740.1|WP_041666065.1|108999_109284_+|hypothetical-protein
MTAKFKTLAVAAAFFAAGSMAGPRLFSVTPAHAAEAAGGNQSVVQALDNQVGCPYYNQNGRHWRGGRRGRGGCWNQGQQPPCWGDDGQGQGQQS
>NC_013740.1|WP_012937489.1|109542_110259_+|response-regulator-transcription-factor
MDNYSVLLVDDDPKLLDLLVNYFTKEQFTVLAARDGEEALRIFRKEQPQLLVLDLMLPKIDGRDVCRTIRQDSTVPIIMLTARDAEFDRLMGLELGADDYVTKPFSMRELVARVRALLRRTYGAYGQQKEGAPETVIRAGTLELDLDRHILRRKEEGDGWKPIELTPIEFNLLEVLMKSPGHVYNRLQLMENSHGFAFDGYERTIDAHIRNLRRKIEPDTKNPRYILTVYGIGYKFGG
>NC_013740.1|WP_012937490.1|110262_111429_+|HAMP-domain-containing-protein
MHFHSVRNKMMLSTFLLILVCALIVIAICNQQMETHFFQYLQDPSALAGQQGGENCGQGLGMGRGMMGGGMGMGGMRRRMMMGAAERTFVESYHKSLWWIGFLFAGIGLVVSYFLSGNITRPLRQLSQAAEKIRQGELKQEVPVETGDEVGQLASVFNQMSAELAANESNRQELLANIAHELKTPLAVLQGHLESMLDGVEQPEPDKLFSMQEEVMRLTRLVGDLRDLSLAQVHQLELHLQPVDLGEKTERSAEMLEPLLEEKKLHFKKELAPDLPVRQLDPDRMNQILYNLITNAIRYTTPGTAILLKTEGAGEKVRLTIADEGPGIPPEDLPHVFEQFYRGEKSRNRASGGSGIGLSLAKSFVEAQGGHIEARNRPQGGAEFVVEV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013740_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013740_2

273815-273889

Orphan

Consensus_repeat	Method
TGTATTTTGGACTCACCCCAATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013740_2

>merge|NC_013740|2|273815-273889|CRISPRCasFinder
TGTATTTTGGACTCACCCCAATAATCATTTCTGTTCGTACTTACACGATCCTGTATTTTGGACTCACCCCAAAAG

>NC_013740|2|2|273815-273889|CRISPRCasFinder
TGTATTTTGGACTCACCCCAATAA	TCATTTCTGTTCGTACTTACACGATCC
TGTATTTTGGACTCACCCCAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013740.1\|WP_012937628.1\|278808_279879_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_013740.1\|WP_012937619.1\|267880_268966_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NC_013740.1\|WP_071818337.1\|277313_278621_+\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_013740.1\|WP_012937623.1\|272137_273559_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG	unknown	unknown	gnl\|CDD\|274879
NC_013740.1\|WP_041666334.1\|276226_277351_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NC_013740.1\|WP_012937615.1\|264686_265205_+\|folate-family-ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|275311
NC_013740.1\|WP_012937632.1\|282020_282584_-\|HutD-family-protein	unknown	unknown	gnl\|CDD\|377578
NC_013740.1\|WP_012937624.1\|273898_274426_-\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_012937617.1\|265672_266449_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NC_013740.1\|WP_012937620.1\|268978_270235_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|223857
NC_013740.1\|WP_012937618.1\|266631_267897_+\|DUF1015-domain-containing-protein	unknown	unknown	gnl\|CDD\|377633
NC_013740.1\|WP_012937629.1\|279898_280597_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_013740.1\|WP_012937633.1\|282785_283691_+\|glutamate-formimidoyltransferase	unknown	unknown	gnl\|CDD\|131079
NC_013740.1\|WP_176767953.1\|281796_281964_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_012937621.1\|270468_271023_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NC_013740.1\|WP_012937630.1\|280589_281804_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_013740.1\|WP_187287534.1\|274891_276166_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237046
NC_013740.1\|WP_012937622.1\|271053_271833_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NC_013740.1\|WP_012937614.1\|263714_264683_+\|agmatinase	unknown	unknown	gnl\|CDD\|212537
NC_013740.1\|WP_012937616.1\|265343_265676_-\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226827

Protein	Function_ID	Function_description	E-value
NC_013740.1\|WP_012937628.1\|278808_279879_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	8.80102e-50
NC_013740.1\|WP_012937619.1\|267880_268966_+\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NC_013740.1\|WP_071818337.1\|277313_278621_+\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_013740.1\|WP_012937623.1\|272137_273559_-\|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG	gnl\|CDD\|274879	TIGR03955, iron-only_hydrogenase_maturation_rSAM_protein_HydG, [FeFe] hydrogenase H-cluster radical SAM maturase HydG. This model describes the radical SAM protein HydG. It is part of an enzyme metallocenter maturation system, working together with GTP-binding protein HydF and another radical SAM enzyme, HydE, in H-cluster maturation in [FeFe] hydrogenases. [Protein fate, Protein modification and repair].	0
NC_013740.1\|WP_041666334.1\|276226_277351_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NC_013740.1\|WP_012937615.1\|264686_265205_+\|folate-family-ECF-transporter-S-component	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	9.37941e-34
NC_013740.1\|WP_012937632.1\|282020_282584_-\|HutD-family-protein	gnl\|CDD\|377578	pfam05962, HutD, HutD. HutD from Pseudomonas fluorescens SBW25 is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterized repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. Evidence outlined by Zhang & Rainey (2007) suggests that HutD functions as a governor that sets an upper bound on the level of hut operon transcription. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of PA5104 (HutD from Pseudomonas aeruginosa) show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.	1.25398e-23
NC_013740.1\|WP_012937617.1\|265672_266449_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.70776e-32
NC_013740.1\|WP_012937620.1\|268978_270235_+\|sodium/glutamate-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	9.69469e-125
NC_013740.1\|WP_012937618.1\|266631_267897_+\|DUF1015-domain-containing-protein	gnl\|CDD\|377633	pfam06245, DUF1015, Protein of unknown function (DUF1015). Family of proteins with unknown function found in archaea and bacteria.	0
NC_013740.1\|WP_012937629.1\|279898_280597_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	8.28207e-122
NC_013740.1\|WP_012937633.1\|282785_283691_+\|glutamate-formimidoyltransferase	gnl\|CDD\|131079	TIGR02024, FtcD, glutamate formiminotransferase. This model represents the tetrahydrofolate (THF) dependent glutamate formiminotransferase involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia - part of the process of regenerating THF. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism. [Energy metabolism, Amino acids and amines].	5.77705e-163
NC_013740.1\|WP_012937621.1\|270468_271023_+\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.57451e-83
NC_013740.1\|WP_012937630.1\|280589_281804_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	2.47707e-84
NC_013740.1\|WP_187287534.1\|274891_276166_+\|GTPase-ObgE	gnl\|CDD\|237046	PRK12297, obgE, GTPase CgtA; Reviewed.	0
NC_013740.1\|WP_012937622.1\|271053_271833_+\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.63225e-57
NC_013740.1\|WP_012937614.1\|263714_264683_+\|agmatinase	gnl\|CDD\|212537	cd11589, Agmatinase_like_1, Agmatinase and related proteins. This family includes known and predicted bacterial agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme, belonging to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. Agmatinase from Deinococcus radiodurans shows approximately 33% of sequence identity to human mitochondrial agmatinase. An analysis of the evolutionary relationship among ureohydrolase superfamily enzymes indicates the pathway involving arginine decarboxylase and agmatinase evolved earlier than the arginase pathway of polyamine.	5.34095e-133
NC_013740.1\|WP_012937616.1\|265343_265676_-\|AzlD-domain-containing-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	3.31231e-15

>NC_013740.1|WP_012937623.1|272137_273559_-|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG
MTIPYNPASPKAEEFINHQEILDTLAFADERSKDPDYCRSLLEKARTLKGLTHREASVLLACEDPSILEGIYDLAREIKDKIYGQRIVLFAPLYLSNYCVNGCVYCPYHMKNKHIARKKLTQDEIRKEVIALQDMGHKRLALEAGEDPVNNPIDYILECIHTIYSIKHKNGAIRRVNVNIAATTVENYRKLKEAGIGTYILFQETYHKENYEKLHPTGPKHDYAYHTEAMDRAMEGGIDDVGVGVLFGLNMYRYDFAGILMHKEHLETMFGVGPHTISVPRIRPADDISVQSFPNAISDAMFKKIVAILRITVPYTGIIISTRESAATRKAVLEVGVSQISGASRTSVGGYAEEEEEDSAQFEVSDNRTLDQVINWLLTDGYIPSFCTACYRAGRTGDRFMSLAKTGEISNCCQPNALLTLREYLDDYASPETRQKGMEAIKKELNHIPNPQVRATCEAYLQKIDGGERDFRF
>NC_013740.1|WP_012937622.1|271053_271833_+|TPM-domain-containing-protein
MKRLLLFLVLVCQMVFAPLQAGAAAQVPPRPTASIYVQDQAGVLSRNTRDTISAYSTALARKTKAQIVVLTVPSLRGQSLEDYSLTVLRQWGIGDKEKNNGVLLLVAVQDRKSRIEVGYGLEGALPDGLTGRIQDQAMLPYFRQGDYDRGILNAYSAILQTVLKEYNLTPQDLPVQKALPAKQGDTVTISPLMAGIGLLGILILFLLDRVLLGGALFRFLFYLFFFRGGGRGGGFGGGGFGGGSYGGGSGGGGGSSRSW
>NC_013740.1|WP_012937621.1|270468_271023_+|LemA-family-protein
MKKSLVVFFAVVLLLAGWIFGSYNGVVTANENVNGKWSQVETQLQRRSDLIPNLVNTVKGYSAHESQVFTDVANARARLAGARNVTEAAQANGELSGALSRLLAISENYPQLKANTNFIQLQDELAGTENRLAVARKDYNDAAQAYNAKIKSFPTVLVARMMGFQERSYFKADPQAQKAPQVKF
>NC_013740.1|WP_012937620.1|268978_270235_+|sodium/glutamate-symporter
MFISLTEGILTIRADGICTTALAAVMLLLGVWLKAHSRLLRKYCLPAPVVGGTLAMLLVFLGHETGLFQIEFDTQFQIPFMISFFTAVGLGAKLSAFSKGVNKGGKLLLIYWLITAFISLCQNLIGLLVGHLIGLEPAYALLSSAISMVGGHGAAGAYGSTFLKMGYPASMEVGASAATFGLIAAVMSGGPMGRFLIEKYHLRPEAEKEAPEVPEKPKDTDLTYQQLAKLDILINVSAILICMGLGVWLAQGVGSLLNMTFPSYVCAMFVGVLVRNLNEQFHFYQFSESLVGSFGEIMLNLYLAIVLMSLKLWEMAGILSGVMLIVLAHVAFMLLMCYFVVFRVLGSNYDAAVMCAGLCGHGLGAVPSAMVNMTVLADQYGVSRKAFLIVPVVGSCLADLAYQPHTLLLIKLFVENLN
>NC_013740.1|WP_012937619.1|267880_268966_+|3-phosphoserine/phosphohydroxythreonine-transaminase
MGRIFNFGAGPSMMPLPVLEQAQRELLDYKGSGMSMLEISHRSPLFEEVNDQAQAHIKELLGMDDSWAVMFMGGGATLQFSMIPMNFLTPGKTAAYAITSTFSEKAIKEAQKVGNAVEIYSSKATGLDRVPRPEELVLPDNCAYLHLTGNCTAEGLEYFEYPDTGDVPLIVDMSSDILSRPIPLDKFSLIYNGAQKNIGPAGVTVVMAKKDFLKGRDPQLPIMMNYETYADHDSTYNTPPVFGIYLVDLMSQWLLDQGGLEKVEQRNIAKAKMVYDVLDAHPDFYKGHAQKDSRSLMNVTFNLPTKDMEAQFVEESKAQGLAGLKGHRAVGGIRASIYNAMPLEGVQALVDFMEDFWKKNR
>NC_013740.1|WP_012937618.1|266631_267897_+|DUF1015-domain-containing-protein
MAEIRPFAALRPVPELVSQIAELPYDVMSTQEARDILKKDPLSFVRVSRAEADLPEGIAESDPRVYAKARENLEDYMAKGQMRQDPQPCYYIYRQQMGAYIQIGLVAAASLKEYKEGIIKRHELTRQVKETDRVNHIMATKAQTGPVFLAYRSKGLLTAFLLEYMGSHTPAYNFVGDDKIRHTLYVISEPLKVKEVTRLFQQVPELYIADGHHRCAAALRVAEELAKRPNQTGKEEYNYVLSVIFPSNMLHILPYNRIVRDLGELSEEKFLEMVQENFLLEKDDRPVEPQAPHTFGMYISGQWYRLTAKPDTYPTDDPIHSLDVSILQDNLLAPVLGIDDPRTDPRIDFVGGVRGLSALEDAVDGEDATVAFSLYPTSMDQLMTVADKGLVMPPKSTWFEPKLRDALTVHMIGDEQDGKNL
>NC_013740.1|WP_012937617.1|265672_266449_-|AzlC-family-ABC-transporter-permease
MGYITRRVLQKDAPIILGYWVLGMACGMLGEKAGLNPFHMFIMSVLAFAGSSQFIGIAMMLQSASYISIALTILMVNLRYSLFTSTLAPLVARKSGLYTTLFSYGTTDETFALNLSSFQDEEEHWTHEEALGLDLLSMVVWAIANAFGCYASRLVHLDLSLVSYILTAMFLGIWSNYLKNRTMIITGLAAGVLAVLLSQVVPYKLHIVLASLIPSGIAAWLYMKHGGKGASPSEEGEKLSETDDEEVYGTMEEGGSDV
>NC_013740.1|WP_012937616.1|265343_265676_-|AzlD-domain-containing-protein
MTPMNQTYILTVVLIMALTGFLPRVIPMAIIRKHPIPQWFKVWLNFVPPAIFGALVFPDIFLTEGHLNLSLHNIPLLTTLLITPLVLKTKSLGVAVLAGGGVFALLEYVL
>NC_013740.1|WP_012937615.1|264686_265205_+|folate-family-ECF-transporter-S-component
MTGLQKRRPGQWITMIGFCVAMEVILARFLSLHTWNLKIGFSFLPVVAAALWGGPLAGGITGALGDLIGALLFPVGAYFPGFTLSSFLDGAIYGWCFRKGTGKRQILLAVLLVQVAISLLLNTFWLTVLFQVSLESLLTLRLFQCAAGIVIKFLLLSLVLPVLRKNLVPLGK
>NC_013740.1|WP_012937614.1|263714_264683_+|agmatinase
MDNFSLQKPLNMAPTGIATFAKTDLAPDIYNLNADIAVLGAPFDLAIQGRTGCRLGPRGIRLGSTRFTYKKGGTYDSERKEFYMDTDKWKVVDCGDADYIPGDLTGTMANLREAVRIIQSQGTMPVVLGGDCAVDFPVLQGLEGIGNFDIIHIDAHLDWTKPLDGQKYFNGSPMRNAAALPYVGRILHLGIRGIGSSGPEDFAEAREHGDGIYSVRDVRKKGIEAILEEFKPAEKAVLCFDIDAMDAVYAPATGSPMFGGFNYDDAVDILEAIARHTELAGMVLTEVAPPFDDVGGTTGYLAARLISDMLGFATKAREKKKG
>NC_013740.1|WP_012937624.1|273898_274426_-|hypothetical-protein
MGHQNKIAKAIVAGLVVASSFGMVAPVMAAPAVKSTIASKQAAIDAAAKVVPPEAVLTSAKTDDAKFDLEYLVPDTLQRYEIVVDRATSKVQSAVIKTSNYPGSVTVSKTEADVKGTILADYPDAKNIVVTKYTDDKSGTPFVIYKATFETATLTGTALLNPATALIGYQELKFK
>NC_013740.1|WP_187287534.1|274891_276166_+|GTPase-ObgE
MFTDKARIYVEAGSGGDGASSFRREKYVACGGPDGGNGGRGGSVVLVADKDLNTLVDFRYKRKFVAQRGGNGAAKNCTGAKAPNVEVKVPLGTVVYDDATGVALADLAHPGDQFVAARGGRGGKGNACYVTSTKQGVTFAEKGEPGTKGWLRLELKMLADVGMVGYPSVGKSSIVARVSAARPEVAAYHFTTLTPVLGVVRLDAETSFVLADLPGLIEGASQGVGLGHDFLRHIERTRVILHVVDVSGCEGRDPVEDFKKINEELVLYSEKLAKRPMLVVANKMDLPDAEENYKKLEAYVTAQGYPIMKASAATSQGLREIMWKAYEMLQKAPAEEEIIDIGKVDEADPDSFTILRDTEDADFEVKGKNIERLVAMTNFDNEEAVYRFQLIWRRLGIEKALKEKGIQEGQSVKIGDMVFDYQEQ
>NC_013740.1|WP_041666334.1|276226_277351_+|glutamate-5-kinase
MDRSKIAEVKRVVVKVGTSTITYPNGKINYEKIEKLARIMTDLQNQGKEMILVSSGAGAAGVGRMGLEAKPASIPGKQACAAVGQGILMHIYERLFGEYGQVVAQVLLTKSDMVNRHSYANARNALQEMISWGVIPIINENDVVAIDEFKIGDNDNLSALVASLADADLDILLSDIDGLYTANPKTHPEARLVSVVEEVTPEIEATAGGAGSKNATGGMLTKLQAAKNAMSAGIALIIANGEDLEILRKIMRGEPVGTLFVPRESHLRFRNQWLAFGSRISGKVIVDEGLAKALRQKGGCSILPVGITGVEGSFESGDTVSVLDQEGHELARGMTNYNAEDLDLIKGCRTSQIEEKIGYKHYDEAIHRDNLVVL
>NC_013740.1|WP_071818337.1|277313_278621_+|glutamate-5-semialdehyde-dehydrogenase
MKPSTGTTWWYCKGAETMYEVGMVRTQGEAAKQASLELGILNTRVKNDILESMAEGLLAEEKNILEANAVDMEEGRKGGLRDSLLDRLLLTHDRLAQMAEGIRQVAGLPDPVGRILSGSTLANGLTITKVSVPLGVIGIIYEARPNVTADAIALCVKSGNAVILKGGREALHSNKAVSDVLIAYGEKAGLPKGAVQFVNVPDRAAVDELIHLEGLVDVVIPRGGAGLIKNVVHNASVPVIETGAGVCHTYVDAYANVPMAVEIAMNAKVNRPSTCNAMETLLVHKDIADAFLPAMLEAYKKAHVTVLGDARTQGYSGDVQPATEEDWATEYGDLRLSVKVVDSLEEAVAHIRRYSTGHSEAIVTDDYENARKFQQLVDAAAVYVNASTRFTDGFEFGFGAEIGISTQKLHARGPMGLPELTTTKYLVNGNGQVRK
>NC_013740.1|WP_012937628.1|278808_279879_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MNIVQKHKVLLIVLAILVAGGAGGYKYYQVKKTQEAVAATRTDAVQRGDLRKTISATGALKALDNVDINSKITGRIVQVYVTENQHVTAGQALVKLDDTSLKATQEMKRAALVDKQATYERDQALLEQGAIAQSVFDTAEANYRVAKAEYEQATSNVNDTVISTPIDGYVIGKPTPVGQTVSSGISTPQVLMSVANLDKMQIYLMVDESDIGQIKQGQTVEFTVDTYPNETFKGTISLIGRSATTTNNVNYYTCYVDVENSEGKLLPTMTARANVIVDEIQDALTVSNKCIHTENGQKYVLVYDKENNTSRKVPVKVLLTGEDRVAVQGDLQPGDELVVKTAKATGSTNRRMGPPI
>NC_013740.1|WP_012937629.1|279898_280597_+|ABC-transporter-ATP-binding-protein
MNVIELKDIVKSYQMGDTIVYALNHVTVNFEKGKFTSIVGPSGSGKSTMMNILGCLDRPTSGEYYLEGKNIANYTDDELARTRNRRIGFVFQSFNLLSRLTAVENVALPLIYAGVNLEERTRRAEQALTNVGLGTRMYHKPNEMSGGQRQRVAIARALINNPAIIMADEPTGNLDTKSTLEIIDIFEKLNQEGKTVIMVTHEPELAAMTQRILVMRDGRLTEEKEGGGQVVV
>NC_013740.1|WP_012937630.1|280589_281804_+|ABC-transporter-permease
MFRECVKMAFEGMLANKIRTFLTMLGIIIGVGAVIAMVSLGLGMQEKVKENITSMGSNLLIVMSGGRTANGQRIASGSGAKLTYEDAKAIEKNVDGIKYVAPGVQNSYQLVAGNQNWTSQVQGVTPNILSIRSYSIEQGRMYSQRDMNSRERVCVIGKTVADTLFPDGNAVGQIMRINKAPFTVIGVLASKGQSAMGQDQDDIVFVPLTTAMQRLMGLTYIRNITIQCENENTVSQVQSDVVTLLRTRHKIKTGADDDFSVRDLTEIIKTAQETTGSITLLLAIVAGISLLVGGIGIMNIMLVSVTERTREIGIRKALGATYHDILLQFLVESMVIGVTGGTTGMILGTVISVIAAKIIGWPIVISIAATIISVVFSVGIGLFFGLYPAKKAALLDPIDALRYE
>NC_013740.1|WP_176767953.1|281796_281964_+|hypothetical-protein
MNKAEKPTLRQKWRGFVEFLHRPKTRFDIRDRGRALVLFLLIVAGLMWVVEKITG
>NC_013740.1|WP_012937632.1|282020_282584_-|HutD-family-protein
MDILKRSRSQAVTTRWSGGTTTEFYIDPPGSAYARRDFLIRISSATVDLEASDFTLLPDYNRIILPLRGGFTLTFPEDGNRQVTLGPLEQASFDGAWHTHSVGKAVDFNVMVRKGHTGTCEKVTGSRLLQPASRRFVYVPFLTDAQLKGAVLDGKPLEQDTLYVLPPEGSCGLTLPEGTPVLYIVVE
>NC_013740.1|WP_012937633.1|282785_283691_+|glutamate-formimidoyltransferase
MAKKLVEFVPNFSEGRDKEKVEKIVDEARKIKGLKILDYSSDADHNRSVVTIIGSPEAVTEAAINMAKVAIQLIDMRTHHGAHPRFGAVDVVPFTPVMGVTMDECVAIANAVGKAYGEMGIPVYLYEDACTKEARRNLAAVRKGQYEGFFEKIKDPEWKPDYGPAVMNEKSGCSAVGARVPLVAFNVNLDCSDKAVADAIAKKVRNIGGGLHYVKAMGVKLEERNQVQVSMNLVNYEKSAVYQAFEMIKMEARRYGVNVVGSEVIGTVPMKALLMAAEYYLQIENFNLDEILEKRLLELEE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013740_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013740_3

844132-844289

Orphan

I-C

Consensus_repeat	Method
CCCCCGTATGGGGGCGTGGATTGAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_013740_3

>merge|NC_013740|3|844132-844289|CRISPRCasFinder
CCCCCGTATGGGGGCGTGGATTGAAATCGCCTCAGTAGCCTGCATGGTGGACAGGCTCTGGTTCGCCCCCCGTATGGGGGCGTGGATTGAAATAGCCAGACCATCGCCCCGATTTTAGAGCAATACGGTCGCCCCCGTATGGGGGCGTGGATTGAAAT

>NC_013740|3|3|844132-844289|CRISPRCasFinder
CCCCCGTATGGGGGCGTGGATTGAAAT	CGCCTCAGTAGCCTGCATGGTGGACAGGCTCTGGTTCGC
CCCCCGTATGGGGGCGTGGATTGAAAT	AGCCAGACCATCGCCCCGATTTTAGAGCAATACGGTCG
CCCCCGTATGGGGGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013740.1\|WP_012938106.1\|841589_842273_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_012938107.1\|842840_843362_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|238813
NC_013740.1\|WP_012938103.1\|838963_840409_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_013740.1\|WP_148213912.1\|843664_843850_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_176767952.1\|840878_841583_+\|FAD-dependent-thymidylate-synthase	unknown	unknown	gnl\|CDD\|234847
NC_013740.1\|WP_012938102.1\|837475_838948_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_013740.1\|WP_012938114.1\|850842_851616_+\|DUF4422-domain-containing-protein	unknown	unknown	gnl\|CDD\|379595
NC_013740.1\|WP_012938115.1\|851775_852270_-\|transposase	unknown	unknown	gnl\|CDD\|379098
NC_013740.1\|WP_041666461.1\|850169_850508_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_013740.1\|WP_012938101.1\|836265_837453_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|236492
NC_013740.1\|WP_012938108.1\|844594_846046_+\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	unknown	unknown	gnl\|CDD\|274395
NC_013740.1\|WP_012938117.1\|853001_854318_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NC_013740.1\|WP_012938099.1\|834535_835015_+\|CarD-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224248
NC_013740.1\|WP_049763441.1\|847327_847744_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NC_013740.1\|WP_148213913.1\|846392_847112_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_049763442.1\|847958_848261_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NC_013740.1\|WP_012938109.1\|846261_846459_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_012938100.1\|835139_836249_+\|PIN/TRAM-domain-containing-protein	unknown	unknown	gnl\|CDD\|227292
NC_013740.1\|WP_012938104.1\|840405_840879_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|224850
NC_013740.1\|WP_012938112.1\|848764_849886_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636

Protein	Function_ID	Function_description	E-value
NC_013740.1\|WP_049763442.1\|847958_848261_+\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	0.00278732
NC_013740.1\|WP_012938103.1\|838963_840409_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_013740.1\|WP_012938102.1\|837475_838948_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_013740.1\|WP_176767952.1\|840878_841583_+\|FAD-dependent-thymidylate-synthase	gnl\|CDD\|234847	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed.	5.45042e-97
NC_013740.1\|WP_012938107.1\|842840_843362_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|238813	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.	9.32398e-10
NC_013740.1\|WP_012938114.1\|850842_851616_+\|DUF4422-domain-containing-protein	gnl\|CDD\|379595	pfam14393, DUF4422, Domain of unknown function (DUF4422). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 255 and 371 amino acids in length.	3.40814e-133
NC_013740.1\|WP_012938115.1\|851775_852270_-\|transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	3.3931e-07
NC_013740.1\|WP_041666461.1\|850169_850508_+\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	9.71123e-48
NC_013740.1\|WP_012938101.1\|836265_837453_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|236492	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.	3.50565e-141
NC_013740.1\|WP_012938108.1\|844594_846046_+\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	gnl\|CDD\|274395	TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose phosphotransferase, WbaP. The WbaP (formerly RfbP) protein has been characterized as the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.	2.36306e-146
NC_013740.1\|WP_012938117.1\|853001_854318_+\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	5.18212e-17
NC_013740.1\|WP_012938099.1\|834535_835015_+\|CarD-family-transcriptional-regulator	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	5.34526e-45
NC_013740.1\|WP_049763441.1\|847327_847744_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	4.95158e-49
NC_013740.1\|WP_012938100.1\|835139_836249_+\|PIN/TRAM-domain-containing-protein	gnl\|CDD\|227292	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only].	1.36869e-119
NC_013740.1\|WP_012938104.1\|840405_840879_+\|ribonuclease-III	gnl\|CDD\|224850	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and repair].	1.39658e-40
NC_013740.1\|WP_012938112.1\|848764_849886_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	1.14455e-175

>NC_013740.1|WP_148213912.1|843664_843850_+|hypothetical-protein
MRSMVMGASATADILQAPWTTEEHGPAAGTISKPDNLTSLSTVAMNDISLNQAFFYTGNMV
>NC_013740.1|WP_012938107.1|842840_843362_+|phosphatase-PAP2-family-protein
MHLETHYDRTYARLTRPFRTRPWAIRGLFLLNGGLVILMYIAYPLLLWQLWQQGGLAGNTALQKAFWIPALSFLLLTLVRSKINRPRPYEFWTLQPLLPRNKQGESFPSRHVFSSTIIAMTYLYFQPPLGLAFLAVSLASAVVRVLAGVHYPSDVAAGMGAGVVAGLLLWALA
>NC_013740.1|WP_012938106.1|841589_842273_+|hypothetical-protein
MGYKPIEEIQKETREWDFIRELPDQVGPFTKKLVDTISGQVLTICRYEAPELRARLDIIYTSETFDYIVIHTMGMNSYRDIRFIYKDRDVFAKNVRAYLPGILHSMEDPTSVNLGEQVAEHGILTWEYGNHLPEKIGPFELYIKPAHAIEHINGSIILIDYSDFQRMDQLIIMYNRLRDQFFGEVKINSVFHASMDFDSRNLKELETKLKEHLEPTLQKVTQADHDL
>NC_013740.1|WP_176767952.1|840878_841583_+|FAD-dependent-thymidylate-synthase
MHVKLLRYTPEPDRTVAMSARLCYSPIGAAELENKMTDQEVASLVRRLGQMGHTSTFEHVSFTFAIEGVSRVLTHQLVRHRIASYSQQSQRYVKEHDFETILPPTLAARPECKKEFEELCGKIQDLYNKWTEAGVPAEDARYILPNAAETKIVVTMNARSLLHFFQLRCCSRAQWEIRALAWEMLRQVKEVAPILFEKAGPTCESDRVCHEGKMSCGRLEKLLAQDAAKAGEKA
>NC_013740.1|WP_012938104.1|840405_840879_+|ribonuclease-III
MRYEQYQRLLDHVLATCGETQTMPEPRLIHPVELAYIGDAVFSLYVRMRILPVSSHVQVLHDLASRMVSAVMQAKAMDALEPELTEEEAQIARRGRNTKSTVPKSASVREYRQGTAFEALMGYLYLMDRKDRLQALMDHSFELIRQAMEEERKQKRK
>NC_013740.1|WP_012938103.1|838963_840409_+|cysteine--tRNA-ligase
MSIRVYNDMTRQKEEFVPLHPGKVGIYVCGVTPYNHPHIGNARPFVVWDTIRRFLDHEGYDVTYVQNFTDVDDKIIRAANEEGVTWDVIANRYIKAYFEVMDKLHVKRAHIYPRVSEHIPDIIHTVQELINNGYGYVVDGDVYYRVERFSHYGELSGRKLDDMMAGARVDVDERKENPMDFALWKSAKPGEPSWDSPWGKGRPGWHIECSTMSTKYLGNTLDFHGGGSDLIFPHHENEIAQSEGATGVHPFVRYWVHNGFITINEEKMSKSLGNFKTVYDLLKEYEPETIRYFILNTHYRSPLDFSQERLAEAGRSLERLRTAQNNLQEIQQVITVGPDAESLALRDKVEELRKGFFDAMSDDFNTSLAISYLFALAKEINVYHNAIISGAKKPDGKLVEQIDKAWKEMIGVIGILENQPAANGEGGAVSNEEAEIAARIEERQAARKARDFAKADAIRDELAAKGIILEDTPQGVRWKRK
>NC_013740.1|WP_012938102.1|837475_838948_+|glutamate--tRNA-ligase
MEKKLKVRFAPSPTGPFHIGGARSALFNWLLARKENGVMLLRIEDTDRDRSKPEWEANIKAALKWLGIDWDEGVDVGGPNGPYRQMERLDIYKKYTDKLLAEGKAYYCYCTPEELEAEREALTAQGKMPRYMGKCRNLTPEQRAAYEAEGRKPTIRFRVPENEDIVVHDEVRGDVHFDSNGIGDFVIVKSDGIPTYNYAVVIDDALMGVNCVIRAEEHLSNTPRQLLLYDALGFEKPTFGHISLILGPDHKKMSKRHGATSVDQYRQMGYLPDAIVNFLALLGWSPNSDQEIFSREELIQQFSLDHVAKNPAVFDIKKLNWLNAHYMRQLSDEDYVAFAVPFMKEAGYMTGEETGEKLEWLKKVILTARDQAEFGKEIPEKVALYFTDEFDFETPEAEAVLKEETVPQVMGLFLDKLAAAEGLDHAATKALFKAVQKETKLGGKKVFMPVRVALTGNQHGPELAEMIPLLGKERVASRIRGSLAKAGVNL
>NC_013740.1|WP_012938101.1|836265_837453_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MNNELVCIIAAAGMGKRLGLGYNKNYACIRGIPILVRSLHQMSQVPGLDLALVAVAPGEEEGARQLLEEWQPRQFPNLSWNIVTGGKERQDSVANALARLPENTQWVAVHDGARPFADPELIQRVWDKARETGAAVAAVPCKDTIKMADLEKSVERTLDRSRLWAVQTPQIFRPGLLREGFSLAREQHLDVTDDASLVEALRKKVGLVMGSYDNRKITTPEDLDWAQDLAARREGKNMEFRIGSGYDVHRLVEGRPLILCGVTVPWDRGLDGHSDADVALHALMDALLGAAGMGDIGRLFPDTDDAYLGADSRKLLAAVLEKLRAAGWQVNNVDVTIIAQRPKLAPYEPAMLENLLTDLGLPRDAVNVKATTTEKLGFTGRGEGIAAEAVASLTR
>NC_013740.1|WP_012938100.1|835139_836249_+|PIN/TRAM-domain-containing-protein
MVEKIIKFVIILIFAALGVFLMEIATPLLGEFVSSDTLKLGFLGVTPLNLIMGIIGALIFGYIGKAAATPLIHYTLHYSEILASYLADLPTGDIFVLSIGVITGLIVATLLGTAFSRLPIVGPYISLIFSIMGAIIGAKVALNKREDILLFFNRVWFARNKDNTRKNNTRNASRTYKLLDTSVLIDGRILDVIRLGFLEGVIVIPKFVLEELQKIADSGDTLKRNRGRRGLDIVRAIQADKNAVVEIAEKDYDDITEVDTKLVRLAKERGGMVATNDFNLSKVAEIQGVRVLNINDLANALKQSVLPGEELQIYLAKEGKEPGQAIGYLDDGTMVVVEGGKRCVNFTVPVTVTSVLQTSAGRMIFAKLK
>NC_013740.1|WP_012938099.1|834535_835015_+|CarD-family-transcriptional-regulator
MFTVGDKVLYPMHGAAVIKNVEQKQIDGHPVNYFVLKMLLSDMKVLIPEVNVDKIGLRPIVNKAILPKVEDVLKARPENKMKRITWNRRYNMYVDKMKTGDIFEVADVVRTLAVQETEKKLSAGERRLLTTAKQILLSEFMLVESVDEEKSEKWLDQFV
>NC_013740.1|WP_012938108.1|844594_846046_+|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP
MFHTAFSESDPDSFIHHHLNYFLPTIYTITDWVMILLAEFLAYHLRGAVTGNTHFHMPWLNFWVAFPLLFLLFFRQGGIYTKHLGYWKLLETIFRACTYAAGAIVVFVYLSHISASTSRLFVGLLWIFSIILVTLFRYFFTHVLNWAGVGSVPVLLVGAGKTARLVLQGIRDDIGLNFNVIGYVDDAGPQEENVGNLPYLGTFGQVVEVIEKTQVQDVCIAVPGMTPEKLNRLIHVIQPHVRNLSFVPDLIGLPVNGIEVDSLFNERLMFMSLKNNLARSYNRVIKRIFDLVLTTIGVVLLSPIFLLLAILIKLDSRGPVIFAHKRIGKGGKLFPCLKFRTMCVDADQKLKEYLAANPEARKEWEAEFKLKDDPRVTRVGKVLRKTSLDELPQLFNVLIGQMSLVGPRPIVTAEIPKYGPYIKDFYMVHPGITGMWQVNGRSDTTYEERVQMDSWYVRNWGVWLDIMLLWRTFGVVLQHKGAY
>NC_013740.1|WP_012938109.1|846261_846459_+|hypothetical-protein
MKEFMEQYNVSLDDAPPLSKEDAKTVYDWLELSDQQKTKKAKRECLEKAKELDPFDVDVLMQLLL
>NC_013740.1|WP_148213913.1|846392_847112_+|hypothetical-protein
MPGKSQRTGSLRCGCPYAALAIGKETEMGIHSGSQKILDLGKENLKRQKLYKESMGNFYMVIDTRPYMRAMQYYFELLESCCMIQQAITVAREMLKLNRNDNQGIRFYLMALHVYSEDEFNASKLIQENKGEENRCFFAMSMALLKFRQGKWKEAQVILERLKTQYNGFQNFLRDAAAGGNVFYEGANMNYYQPFTRSELITMVLDFHFLWDGAQEFFHWAKTVMSPAKKRRGKKNSAE
>NC_013740.1|WP_049763441.1|847327_847744_-|ATP-binding-protein
MRTLAFVERSENLILLGPPRVGKTHLATAFAVEALHHGKTAYFITLAHLIEDLEKRREKGLLSRRCKFYARPDILVTDEVGYMQLSRQQAELLFQIICARYERGTIIMTSNKYFSDWGEFMSDSVIATAILDRTLHAC
>NC_013740.1|WP_049763442.1|847958_848261_+|hypothetical-protein
MFSMELEHLARNAEYGIPMTVEMEKEAETMCDYGRGLARKYAEKGRAEGLEKGLEKGIQQERNSNILGMLREKIPMETIARITKVSVEQIRELGKLNGML
>NC_013740.1|WP_012938112.1|848764_849886_+|UDP-galactopyranose-mutase
MKYNYLIVGAGLYGAAFAQQAREAGKSVLVIDKRPQIAGNVYTRDVEGIHVHQYGAHIFHTNNKEVWDYVNRFATFNRFTNSPVANYHGELFSLPFNMYTFNKMWGVATPEEATAKIEEQKRQAGITNPRNLEEQAISLVGTDIYEKLIKGYTEKQWGRPCTELPAFIIKRLPVRLTFDNNYFNALYQGIPVGGYTRLVANMLEGIEVRLNEDYLENKEKWDALADKVVYTGPIDAYFHYEYGPLEYRSVRFETELLDKPNYQGVAAMNYTDRETPWTRIIEHKWFQFGKDDNGNDLSKTVISREYSSEWKVGDEPYYPVNDEKNSALYQKYRQRAADEKNVLFGGRLGEYKYYDMDAVLGVALAAAKEELRK
>NC_013740.1|WP_041666461.1|850169_850508_+|four-helix-bundle-protein
MIVWDKAKKLTIDTYRLVKFLPKEELYSLSDQMRRAAISIISNIAEGSGRVTARETRYFLGIARGSVNELHAQLIVCQELEYLTQAQVKPLMALSDEVRRMLTSLIAKESYD
>NC_013740.1|WP_012938114.1|850842_851616_+|DUF4422-domain-containing-protein
MDLKILIAAHKPYWMPSDPVYLPLQVGAEGKSLIPGYTPDNTGDNISSKNPHYCELTGLYWAWKNLSCEYIGLCHYRRYFGHQVHTDDLEKKKAAIFSGADYEKLLGQYDVILPVKRNYYIETVRSQYEHAHYKKDLDEVEAIIAEKYPQYSAAFTTVMNRRKLHILNMFAMKKTLFDQYCSWLFDILFTLESRIDISSYSPYEARIYGFLSERLFNVWLEKQGLKEVEVPVVFLERVDWPKKIREFLARKFLGKKQ
>NC_013740.1|WP_012938115.1|851775_852270_-|transposase
MNDSSCVFEIIEKTVSTSENRLSISSLCKMAGVSRSGYYAWVKAEAFRQAQEEQDRKDFELILAAYKRRGYKKDARSIYMELLHMDPPVIMNVKKIRRLMKKFHLLCPIRKANPYRQLAKALKTNTVADNLLQRQFEDYGPRMVLLTDITYLPSAHPSSITGIV
>NC_013740.1|WP_012938117.1|853001_854318_+|ATP-binding-protein
MLIKYWIENYKSFYKRAEFHMQPAPRLQQLSYSVLNEKAGRKKVRGLCSSVVYGPNAAGKTSFLGALEVLKAIVLEGHIRDKERMTNNISVNQLKYIPNIRYFLSGDKIIKPVTLGVEAVTEGLLFSYEISFQCENLLNSHIEREILSESLSVNGKEIYIRKGNKVKFVNRVPMAYRNGTEELKGISKLSLQTEPTELFLTGNFKAFYSSKLVKLIRDWFTNKLFIVYEAAFVDILPNLADNRSNASFGMINDLAKAIGSSANEMVYINDPDGQPKLFSEFGTPNKKVLIPANQFESLGTRRIVSIFPAIAKAFLNGATLLVDELDASIHTMAIISLINVFHNDEINRNHAQLIFNTQNPIYLNRNIFRTDEIKFVDRNDETHCSELYALSDFGTKGSTRAKNTNNYMTNYFVNRYGAIRNIDLSDIFLKILEEQDNK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_013740_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013740_4

882151-886170

TypeI

I-C:NA

Consensus_repeat	Method
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCNCCCCGCANNAGGGGGCGTGGATTGAAAT	CRT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	PILER-CR
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	PILER-CR

61 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_013740_4

>merge|NC_013740|4|882151-886170|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTGGAACCGGACGTACATGTCATTGAGCGATGCCCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTCTGGAACCGGAAAACTGGCAGGAGCAGCAGGCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTACATTTCCCACATATATATAGGGTACGTATATAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTGTTAAAGCTAATTCAAATCGACGACCCAGTGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTGGATAAAGTAGGTTTATCAAACGTTGAAATTATGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCATGAGCTGCCCAGCAATGCGGAACTGGATTATAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCACCATCTGCCCCGGCGTGCTGTCCACTCTCAGAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTGCTACGGGCGACTTATCCGCTATGTACATCGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCATGGGATCCCATATCGAGGAGTTGGTCAAGCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTGTTAAAGCTGATTCAGATTGACGACCCAGTGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGCTGCAATGGGATTTTTGCAAAACGGCGATTCAACCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTTCGCCGGTTTTCCACGAATCACAGGGGAATCCGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGTAATGATTGTTACCATGCTAGAAGGGCTGATTAAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATAGCCCGTAGATCATCAGCAGTTCCCGGTAGTTGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATAGACCTGGTATAAAGAGGAGGTGGGCGTAGATGTGTCGCCCCCGCAAGGGGGCGTGGATTGAAATAAACAAGTGTTAATCCTTGCAACGCGCCTGGACAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGGTGATGCGATGAAGGTTCAGTATCGCGATTCTGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGCCGGACTGACCATTGTAAACGCCATCCAGAACAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGGGACCATCGTCAAGGAACAGGACGGGAAAATCCTGTCGCCCCCGCAAGGGGGCGTGGATTGAAATACATTCCTGCTCATGGTCCAGGCTCTTGTGACAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTGTGATATTGGCCGCCGTCACCTTATCCCCGGCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATAGGACGTCCACCTTAAAGTACTTGGCAGCATCCTGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTTATTCTTCCAGCTCGGGGCATCGCTGTATTTGGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTACCACCACCTGGGACAAGGCAGGCGCCACCATCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTCATTATTCGACATTATGCGCCACCCCTCTGATGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTGGAACCAGGTGTACAGGGCATAGTAGAATTCACGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTCCATAAAAGCTACCACCAATTCCAATGAAGTGGTGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTAAAACCTGGGCCGGGGTGGCCAATGACCACGCCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCTGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCGTTACCGATTTGGTAACGGAACTGGAAAAAATTGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATGTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTCCCATAGGCTGAGCTGGTGGAGCATGGATTGGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCCGCTGACCACGCAGCTTGGCTTATGGATCATAAGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTGGCGGCGAATAAAGAAGAGATTGTGGACATCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATCTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTGGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTCCAGGGCAGGCTGTAGCCATAAGGTCACAATGCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATAGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATATTGTTTTGATGGTTTTATTGGCCCATTTTGGTCGTCGCCCCCGCAAGGGGGCGTGGATTGAAATATGGTATAATATAGGCGTGAGGTGATAGCATGAAGTCGCCCCCGCAAGGGGGCGTGGATTGAAATTTGAAGAGAAACATCAACACCATCTTCCTGATGCGTCGCCCCCGTATGGGGGCGTGGATTGAAATTGAGAATTGTATACATTGAAAACATGGACGGCGAGGTCGCCCCCGTATGGGGGCGTGGATTGAAATTGGCCGCTTGAATAGTCATGTTAGCCGGTATGAGTCGCCCCCGTATGGGGGCGTGGATTGAAATCACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTTGTCGCCCCCGTATGGGGGCGTGGATTGAAATGCAGTGAGCTACGACGAAAACCCGAGCTACATCGGTCGCCCCCGTATGGGGGCGTGAATTGAAATTCTGATACAGATCTGATTACTGCGTCCCAGCAAGGTCGCCCCCCGCAAGGGGGAGCGTAAATTGAAAT

>NC_013740|4|4|882151-886170|CRISPRCasFinder
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGGAACCGGACGTACATGTCATTGAGCGATGCCC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCTGGAACCGGAAAACTGGCAGGAGCAGCAGGC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTACATTTCCCACATATATATAGGGTACGTATATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTAATTCAAATCGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGATAAAGTAGGTTTATCAAACGTTGAAATTAT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGAGCTGCCCAGCAATGCGGAACTGGATTATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCATCTGCCCCGGCGTGCTGTCCACTCTCAGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGCTACGGGCGACTTATCCGCTATGTACATCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGGGATCCCATATCGAGGAGTTGGTCAAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTGATTCAGATTGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCTGCAATGGGATTTTTGCAAAACGGCGATTCAACC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCGCCGGTTTTCCACGAATCACAGGGGAATCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTAATGATTGTTACCATGCTAGAAGGGCTGATTAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCCCGTAGATCATCAGCAGTTCCCGGTAGTTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGACCTGGTATAAAGAGGAGGTGGGCGTAGATGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AAACAAGTGTTAATCCTTGCAACGCGCCTGGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGTGATGCGATGAAGGTTCAGTATCGCGATTCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCCGGACTGACCATTGTAAACGCCATCCAGAACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGGACCATCGTCAAGGAACAGGACGGGAAAATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ACATTCCTGCTCATGGTCCAGGCTCTTGTGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGTGATATTGGCCGCCGTCACCTTATCCCCGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGGACGTCCACCTTAAAGTACTTGGCAGCATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTATTCTTCCAGCTCGGGGCATCGCTGTATTTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTACCACCACCTGGGACAAGGCAGGCGCCACCATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCATTATTCGACATTATGCGCCACCCCTCTGATG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGGAACCAGGTGTACAGGGCATAGTAGAATTCAC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCATAAAAGCTACCACCAATTCCAATGAAGTGGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TAAAACCTGGGCCGGGGTGGCCAATGACCACGCCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGTTACCGATTTGGTAACGGAACTGGAAAAAATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCCATAGGCTGAGCTGGTGGAGCATGGATTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCTGACCACGCAGCTTGGCTTATGGATCATAAG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCGGCGAATAAAGAAGAGATTGTGGACATCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCAGGGCAGGCTGTAGCCATAAGGTCACAATGC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATTGTTTTGATGGTTTTATTGGCCCATTTTGGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATGGTATAATATAGGCGTGAGGTGATAGCATGAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTGAAGAGAAACATCAACACCATCTTCCTGATGC
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGAGAATTGTATACATTGAAAACATGGACGGCGAG
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGGCCGCTTGAATAGTCATGTTAGCCGGTATGA
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	CACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTT
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	GCAGTGAGCTACGACGAAAACCCGAGCTACATCG
GTCGCCCCCGTATGGGGGCGTGAATTGAAAT	TCTGATACAGATCTGATTACTGCGTCCCAGCAAGGTC
GCCCCCCGCAAGGGGGAGCGTAAATTGAAAT

>NC_013740|4|1|882151-886167|CRT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGGAACCGGACGTACATGTCATTGAGCGATGCCC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCTGGAACCGGAAAACTGGCAGGAGCAGCAGGC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTACATTTCCCACATATATATAGGGTACGTATATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTAATTCAAATCGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGATAAAGTAGGTTTATCAAACGTTGAAATTAT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGAGCTGCCCAGCAATGCGGAACTGGATTATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCATCTGCCCCGGCGTGCTGTCCACTCTCAGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGCTACGGGCGACTTATCCGCTATGTACATCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGGGATCCCATATCGAGGAGTTGGTCAAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTGATTCAGATTGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCTGCAATGGGATTTTTGCAAAACGGCGATTCAACC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCGCCGGTTTTCCACGAATCACAGGGGAATCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTAATGATTGTTACCATGCTAGAAGGGCTGATTAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCCCGTAGATCATCAGCAGTTCCCGGTAGTTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGACCTGGTATAAAGAGGAGGTGGGCGTAGATGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AAACAAGTGTTAATCCTTGCAACGCGCCTGGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGTGATGCGATGAAGGTTCAGTATCGCGATTCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCCGGACTGACCATTGTAAACGCCATCCAGAACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGGACCATCGTCAAGGAACAGGACGGGAAAATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ACATTCCTGCTCATGGTCCAGGCTCTTGTGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGTGATATTGGCCGCCGTCACCTTATCCCCGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGGACGTCCACCTTAAAGTACTTGGCAGCATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTATTCTTCCAGCTCGGGGCATCGCTGTATTTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTACCACCACCTGGGACAAGGCAGGCGCCACCATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCATTATTCGACATTATGCGCCACCCCTCTGATG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGGAACCAGGTGTACAGGGCATAGTAGAATTCAC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCATAAAAGCTACCACCAATTCCAATGAAGTGGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TAAAACCTGGGCCGGGGTGGCCAATGACCACGCCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGTTACCGATTTGGTAACGGAACTGGAAAAAATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCCATAGGCTGAGCTGGTGGAGCATGGATTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCTGACCACGCAGCTTGGCTTATGGATCATAAG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCGGCGAATAAAGAAGAGATTGTGGACATCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCAGGGCAGGCTGTAGCCATAAGGTCACAATGC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATTGTTTTGATGGTTTTATTGGCCCATTTTGGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATGGTATAATATAGGCGTGAGGTGATAGCATGAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTGAAGAGAAACATCAACACCATCTTCCTGATGC
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGAGAATTGTATACATTGAAAACATGGACGGCGAG
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGGCCGCTTGAATAGTCATGTTAGCCGGTATGA
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	CACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTT
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	GCAGTGAGCTACGACGAAAACCCGAGCTACATCG
GTCGCCCCCGTATGGGGGCGTGAATTGAAAT	TCTGATACAGATCTGATTACTGCGTCCCAGCAAG
GTCGCCCCCCGCAAGGGGGAGCGTAAATTGA

>NC_013740|4|1|882282-885776|PILER-CR
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTACATTTCCCACATATATATAGGGTACGTATATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTAATTCAAATCGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGATAAAGTAGGTTTATCAAACGTTGAAATTAT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGAGCTGCCCAGCAATGCGGAACTGGATTATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCATCTGCCCCGGCGTGCTGTCCACTCTCAGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGCTACGGGCGACTTATCCGCTATGTACATCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGGGATCCCATATCGAGGAGTTGGTCAAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTGATTCAGATTGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCTGCAATGGGATTTTTGCAAAACGGCGATTCAACC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCGCCGGTTTTCCACGAATCACAGGGGAATCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTAATGATTGTTACCATGCTAGAAGGGCTGATTAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCCCGTAGATCATCAGCAGTTCCCGGTAGTTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGACCTGGTATAAAGAGGAGGTGGGCGTAGATGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AAACAAGTGTTAATCCTTGCAACGCGCCTGGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGTGATGCGATGAAGGTTCAGTATCGCGATTCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCCGGACTGACCATTGTAAACGCCATCCAGAACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGGACCATCGTCAAGGAACAGGACGGGAAAATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ACATTCCTGCTCATGGTCCAGGCTCTTGTGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGTGATATTGGCCGCCGTCACCTTATCCCCGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGGACGTCCACCTTAAAGTACTTGGCAGCATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTATTCTTCCAGCTCGGGGCATCGCTGTATTTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTACCACCACCTGGGACAAGGCAGGCGCCACCATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCATTATTCGACATTATGCGCCACCCCTCTGATG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGGAACCAGGTGTACAGGGCATAGTAGAATTCAC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCATAAAAGCTACCACCAATTCCAATGAAGTGGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TAAAACCTGGGCCGGGGTGGCCAATGACCACGCCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGTTACCGATTTGGTAACGGAACTGGAAAAAATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCCATAGGCTGAGCTGGTGGAGCATGGATTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCTGACCACGCAGCTTGGCTTATGGATCATAAG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCGGCGAATAAAGAAGAGATTGTGGACATCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCAGGGCAGGCTGTAGCCATAAGGTCACAATGC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATTGTTTTGATGGTTTTATTGGCCCATTTTGGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATGGTATAATATAGGCGTGAGGTGATAGCATGAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAATTTGAAGAGAAACATCAACACCATCTTCCTGATGCGTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGAGAATTGTATACATTGAAAACATGGACGGCGAG
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGGCCGCTTGAATAGTCATGTTAGCCGGTATGA
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	CACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTT


>NC_013740|4|2|885811-886037|PILER-CR
	CTACATTTCCCACATATATATAGGGTACGTATATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTAATTCAAATCGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGATAAAGTAGGTTTATCAAACGTTGAAATTAT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGAGCTGCCCAGCAATGCGGAACTGGATTATA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCATCTGCCCCGGCGTGCTGTCCACTCTCAGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGCTACGGGCGACTTATCCGCTATGTACATCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CATGGGATCCCATATCGAGGAGTTGGTCAAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGTTAAAGCTGATTCAGATTGACGACCCAGTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCTGCAATGGGATTTTTGCAAAACGGCGATTCAACC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCGCCGGTTTTCCACGAATCACAGGGGAATCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTAATGATTGTTACCATGCTAGAAGGGCTGATTAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCCCGTAGATCATCAGCAGTTCCCGGTAGTTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGACCTGGTATAAAGAGGAGGTGGGCGTAGATGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AAACAAGTGTTAATCCTTGCAACGCGCCTGGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGTGATGCGATGAAGGTTCAGTATCGCGATTCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GCCGGACTGACCATTGTAAACGCCATCCAGAACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGGACCATCGTCAAGGAACAGGACGGGAAAATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ACATTCCTGCTCATGGTCCAGGCTCTTGTGACA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGTGATATTGGCCGCCGTCACCTTATCCCCGGCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGGACGTCCACCTTAAAGTACTTGGCAGCATCCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TTATTCTTCCAGCTCGGGGCATCGCTGTATTTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTACCACCACCTGGGACAAGGCAGGCGCCACCATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCATTATTCGACATTATGCGCCACCCCTCTGATG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTGGAACCAGGTGTACAGGGCATAGTAGAATTCAC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCATAAAAGCTACCACCAATTCCAATGAAGTGGT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TAAAACCTGGGCCGGGGTGGCCAATGACCACGCCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCT
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CGTTACCGATTTGGTAACGGAACTGGAAAAAATTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	GTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTCCCATAGGCTGAGCTGGTGGAGCATGGATTGG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CCGCTGACCACGCAGCTTGGCTTATGGATCATAAG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TGGCGGCGAATAAAGAAGAGATTGTGGACATCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	CTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTG
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	TCCAGGGCAGGCTGTAGCCATAAGGTCACAATGC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	AGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATTGTTTTGATGGTTTTATTGGCCCATTTTGGTC
GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT	ATGGTATAATATAGGCGTGAGGTGATAGCATGAA
GTCGCCCCCGCAAGGGGGCGTGGATTGAAATTTGAAGAGAAACATCAACACCATCTTCCTGATGCGTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGAGAATTGTATACATTGAAAACATGGACGGCGAG
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	TGGCCGCTTGAATAGTCATGTTAGCCGGTATGA
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	CACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTT
GTCGCCCCCGTATGGGGGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013740.1\|WP_012938148.1\|893830_895117_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133060
NC_013740.1\|WP_012938141.1\|887632_888793_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349881
NC_013740.1\|WP_012938139.1\|881738_882029_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_013740.1\|WP_012938149.1\|895800_898560_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319772
NC_013740.1\|WP_012938151.1\|898887_900132_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223884
NC_013740.1\|WP_012938135.1\|877363_879139_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_013740.1\|WP_012938137.1\|880031_880706_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NC_013740.1\|WP_012938140.1\|886448_887618_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_041666107.1\|892457_893123_+\|phosphatidylserine-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|235400
NC_013740.1\|WP_012938144.1\|889902_891513_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NC_013740.1\|WP_012938134.1\|876713_877367_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_013740.1\|WP_012938133.1\|874495_876682_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_013740.1\|WP_012938130.1\|871050_871605_+\|hypothetical-protein	unknown	unknown	unknown
NC_013740.1\|WP_012938143.1\|889016_889598_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_013740.1\|WP_012938136.1\|879138_880035_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_013740.1\|WP_012938138.1\|880702_881734_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_013740.1\|WP_012938147.1\|893119_893809_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NC_013740.1\|WP_041666105.1\|872480_872777_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226079
NC_013740.1\|WP_143068681.1\|872796_873846_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225635
NC_013740.1\|WP_012938145.1\|891641_892385_+\|WecB/TagA/CpsF-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|224833

Protein	Function_ID	Function_description	E-value
NC_013740.1\|WP_012938148.1\|893830_895117_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133060	cd06438, EpsO_like, EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.	2.70887e-96
NC_013740.1\|WP_012938141.1\|887632_888793_+\|M20-family-metallopeptidase	gnl\|CDD\|349881	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme. Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells.	2.14157e-119
NC_013740.1\|WP_012938139.1\|881738_882029_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.795e-32
NC_013740.1\|WP_012938149.1\|895800_898560_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|319772	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA. MgtA is a membrane protein which actively transports Mg(2+) into the cytosol with its electro-chemical gradient rather than against the gradient as other cation transporters do. It may act both as a transporter and as a sensor for Mg(2+). In Salmonella typhimurium and Escherichia coli, the two-component system PhoQ/PhoP regulates the transcription of the mgtA gene by sensing Mg(2+) concentrations in the periplasm. MgtA is activated by cardiolipin and it highly sensitive to free magnesium in vitro. It consists of a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_013740.1\|WP_012938151.1\|898887_900132_+\|amino-acid-permease	gnl\|CDD\|223884	COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism].	2.10744e-46
NC_013740.1\|WP_012938135.1\|877363_879139_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_013740.1\|WP_012938137.1\|880031_880706_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	8.34592e-25
NC_013740.1\|WP_041666107.1\|892457_893123_+\|phosphatidylserine-decarboxylase-family-protein	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	1.03477e-71
NC_013740.1\|WP_012938144.1\|889902_891513_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NC_013740.1\|WP_012938134.1\|876713_877367_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.01812e-92
NC_013740.1\|WP_012938133.1\|874495_876682_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.99761e-55
NC_013740.1\|WP_012938143.1\|889016_889598_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	2.70131e-37
NC_013740.1\|WP_012938136.1\|879138_880035_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.13531e-151
NC_013740.1\|WP_012938138.1\|880702_881734_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	9.51819e-173
NC_013740.1\|WP_012938147.1\|893119_893809_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	2.21744e-43
NC_013740.1\|WP_041666105.1\|872480_872777_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226079	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only].	1.99488e-09
NC_013740.1\|WP_143068681.1\|872796_873846_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	1.73026e-11
NC_013740.1\|WP_012938145.1\|891641_892385_+\|WecB/TagA/CpsF-family-glycosyltransferase	gnl\|CDD\|224833	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane].	1.31906e-85

>NC_013740.1|WP_012938139.1|881738_882029_+|CRISPR-associated-endonuclease-Cas2
MLILVTYDVNTETPAGRARLRKVAKCCVAHGQRVQNSVFECLLDQAQFVLLKGELEALIDKDHDSLRFYNLGNTYQNKIQHLGAKRTYDPEAPMVL
>NC_013740.1|WP_012938138.1|880702_881734_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKRLLNTLFILSEDLYLSLDNQNLTAWREGNVVQRIPLLNLESIFYFGYKGASPALLGACAEQNIGFTFLTPQGKFLARVSGTGQGNVLLRKAQYRKSDQEQASLQLAQWFLTGKIWNARVTLMRFLRDHPLSVNGEQFREAIQILKGALRDLQQAKDGDQLRGVEGNAAHVYFSLFDQLILGDKKTFFFRERNKRPPLDPMNALLSFAYTLLAADCAHALEAVGLDASVGFLHRDRPGRKSLALDLMEEFRSLAADRFVLSLVNTRSLTGKHFKKTETGAVLMNEEGRKIFLTRWQERKQEKLEHPFLKEKIPWGLFPYVQALLLAKWLREDLDGYPAFLGK
>NC_013740.1|WP_012938137.1|880031_880706_+|CRISPR-associated-protein-Cas4
MTWREEEYLMISGIQHFVFCRRQWALIHIEQQWAENRLTAEGQLIHKNAHNDRFVEKRAGVMTVRGLRISSRTLGASGICDVVEFTQTEPGEEGARLAGHRGLWKVLPVEYKRGKDKSDDCDILQLAAQVICLEEMLGCSIEKGCLYYHAIRHRRDIPITEELRQQVRDMFAEMHQYYERRYIPRVKPSRACTSCSLKDLCLPKLQKAGTVADYYAGRFQEEGL
>NC_013740.1|WP_012938136.1|879138_880035_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MEENKAIRNRYDFVVLFDVENGNPNGDPDAGNMPRVDPETGLGLVTDVCLKRKIRNYVEAAKEDQPGYQIYVRETVPLEVNDKKALEYLGVEDVKKIDKKKDPEADRKIRDFMCSNFYDIRTFGAVMTTFVKGALSCGQVRGPVQLGFAHSIDPIMPQEITITRVAITTTKRQEEGRSTEMGRKYIVPYGLYRVEGYVSANLARKSTGFSEEDLQLLWQAIINMFENDHSAARGNMAVRELIVFKHDSELGNAPSYKLFERVKVEKKDPRKAPRSYHDYQVTVDTENLPEGVACQRMV
>NC_013740.1|WP_012938135.1|877363_879139_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALVRYYETLLKQGKVEEPGWSVAKVSAEIQLDEEGKLLGILSLRNEVQRGKKTALTDSLLQVPEVFKRSSGVRPNFLYDNSSYFFGVDGKGKPKRSLQCFEASRAFHHQLLDGCDSPVARGILKFFDSWQPEKAEENPVFQQNRDAIVGASGLVFSVNGQEAQKDPEIRRRWMEYKKEGGGENSEKGQCLVTDKVAEIALIHPNIKNVRGAQSSGAALVSFNAPSLESFGHVDDQGLNAPVSEYAAFAYTTALNQLIREGNSLLCGDTTVVFWAQSAEPLYQQVYMNFLNPSGTGENREQTVKAVLDKMLQGVAADVDGITLSPDEPFYVLGLAPNAARLSVRFFWQNTFGVTLQHLQKHQKRLEIVQPSWEQASFLPLWRLLKESVNPNATKSQASPLLAGSLLRSILQDTPYPEAMYRQFLLRIKADSGDGKISYPRAAFVKAYLLKNHQEKWGGEITMNVNENCKAVPYVLGRMFAVLEGLQQDSSEVSATIKDRYFNAACATPGAVFPVLLKLANAHLNKLNRTNKGLAVIAQKKLGSLMEKITVPDEGNPIPSRLTLDEQGMFILGYYQETQARYTKKEEQA
>NC_013740.1|WP_012938134.1|876713_877367_+|type-I-C-CRISPR-associated-protein-Cas5
MSYGVRIDCWGKYACFTRPELKGERMSYDVMTPSAARGLVEAIFWHPGLRYVIDEIDVLSPIQFTNVRRNELKSKISGSTVLAGARGGKLLAQATHEDIMQRASTVLKNVHYCITLHFEMTEKANASDNPGKFREMLTRRARKGQCYHQPYFGTREFPASFRLVEDDEEIQPYPITQDLGLMLYDMDYRNLQNITPRFFRAKLVNGVLDLRNCEVHQ
>NC_013740.1|WP_012938133.1|874495_876682_+|CRISPR-associated-helicase/endonuclease-Cas3
MTNSLAKTIYLAHLDPEGKRAPQLLLDHLRQVSRLAEEFAPTPEMKEAARQCGLLHDVGKYSADFQNYLLGKKHGRVDHSTAGAQLLAGNGNLISSMEAFCIAGHHAGLSDLGSPTDLPGENTFSARVKKKVPDCSAWKQELEAPKPVQRIEQAISDFQSQGQMDFIGCGLWLRMLYSCLVDGDFLDTEAYMQGGAVQRGGFASLEQLHERFFSALEEKGFFHPQNALNRKRCEILQRCIQKGKDKEDRIYTLTVPTGGGKTISAFAWALEKARTCGKRHIIYVIPYTSIIEQTADILRSYLGEENVIEHHSQVEYEDKDEKMDPRRLATENWDAPVIVTTNVQFFESLFANRSSRCRKLHNVANSILLFDEAQMFPVEYMIPVLRSLEALVRHFSCSALLCSATQPRLDQFLQGKPQELMEDIPGLYDFFKRTQLVNEGLLSYDQVAEALDAQPQSLCICLTKGEAREIASRIRGEYLYLSTNLCPAHRQQVIHAMKEKLKRGEPCRVVSTSIISVGVDIDFPVVYVEENGVDALIQGAGRCNREGKRKAEDSLVHIFATENSRKSHFLEQERQSTHMVEQKFPDLAAPEAIAKYFDWLYHAKDAILDKKKIVELSGNGKYATIGQQFKLIEDHTKNVLIPWNKEAQEIIQQLQYGIRTRQLLRKAGRYMVSVWSQNGPQPGLYEQMLADGVTEALDEQMAVLRDLSVYKEATGLTYQAEEGRGLFS
>NC_013740.1|WP_143068681.1|872796_873846_+|helix-turn-helix-domain-containing-protein
MEESRHYIATPPGATIKEQIVDRGMTQKEFAIRMGMSEKHISKLINGDVHLTPDVAERLELVLGIPASFWNKLEAIYQEKLVKVRRDTELEQEESVAKRYPYKDICRWLGHEPSRKKGQEVIDLCRFFEVSRLQVLENQALTPIACRKMGDTEKSHYILLSLAQLAKRQARDMDVAAFSKEKMKKVITEIRRLTAKISLDFKEQLIHVFKGCGVALVFLPEVRGSFLHGITFEGENHKVVLGIGLRGKDADRFWFSLFHEIAHILLGHIYQEKGISEEDEASANAMAADLLIPRESIRKFYNERLFSIEKIKKFADEQGIGAGIVIGRLQHDGMIPFHMYNQYKSKYGV
>NC_013740.1|WP_041666105.1|872480_872777_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MDVRYKNKKLQKICTDAETARASYGNEMARKLHLRIDQLEAADSIQELILNHIGRCHGLSGNRQGQYAMDLAQPYRLIFKEVESGIQIVMVMEIVDYH
>NC_013740.1|WP_012938130.1|871050_871605_+|hypothetical-protein
MSALDQYSYLFFVCEGKNEEAIVKWLAEADAIDFPKKQYSLDFCRARTKSTRPKILRAATQFDYGGPVAIIYVCDSHGEKWSVGKDCMGNEIPVIKIVTSPEIEILLVHKAHCIEKWKSARAKNPKLHVSAFCRQMFKMDVKNGENFVQQFSSVKDFKKICLEYKSASDSRKFKNELTWYDLLK
>NC_013740.1|WP_012938140.1|886448_887618_+|hypothetical-protein
MGSIVSLTVLFCIYAVSELIAMRTRAILSTVLGISVILLAGFWSGILPQSIIKDAQVSGIGMGVVGMLIVSMGTTIDFAELKQEWKVVVTSILCVVFAVAAIILVGGFVMDPKIAIAGSPIFAGGNAATLIMLAAAKEKGLAYVGTFCLVLLVTQKFFGIPIASVALRHLARQLREDGEFVRRNCEASEEAVQAARKKPLAMPSVLDKPSVYLAKQGLVATLSFYAAKLTGGHIHYLVMCLILGTVFYALGFLDKGILGKTQSSGLIIFFVTIVIFSNLGATTPQQVLSVLPPLIWSAVLGVAGLCVAAALCSRLFRMPFTLAVSLGITCTFGFPTTMLISQEVATAMGETEEQRKALLNYLLPKMLVAGFVTVTITSVVLAGFVVNIL
>NC_013740.1|WP_012938141.1|887632_888793_+|M20-family-metallopeptidase
MEATDAQLKEYIEGKRQEMLDLWAEIVNTESGPKQLDGVNRVGDILQRELEKAGARVRRVKVDHAGDLIVGDWNPGSKEKPVVFMGHMDTVFPAGEAAKNPFRVDEEGNAYGPGVLDMKAGLVIGLYALKALQAIGWNRRPIRFLGVPDEETLHMFSNAKPLIAREAAGAAVVLNFEPGPVSDKLVIGRYGGGPVSITVHGVAAHSGSDPEKGRSAVLEAAHKILKLEAANDIPRGKLINCGAVEGGIGENTIPDFCKIRIGIRYRNQAIGDEIFALLRQVTEKCTVEGTWAELDTSRVMQCMETTEGVRALYGHVADTGEALGLGRIEGIQVGGLSDAGISAAAGIPTLCGMGVRGEGAHTDREFAQVESLYERCLLAAAAVRTL
>NC_013740.1|WP_012938143.1|889016_889598_+|flavodoxin-family-protein
MKVLLLNGSRREKGCTYTALSLVAKELEKAGIDTEIVYIGLNTVNGKLDELVKECAAKMKEADGLVVGSPVYYASPTGEIQVFLDRFAGVAGGDMRLKPAAAIASARRAGTSTTLDVLNKYLMYNEMPVVSSNYWNMVHGSKPEDVLQDKEGVQIMETLGKNMAWMLKCLEAGKKAGVEAPEKPVKVMTNFIR
>NC_013740.1|WP_012938144.1|889902_891513_+|peptide-chain-release-factor-3
MSELQEKIAKRRTFAIISHPDAGKTTLTEKLLLYGGAIHLAGSVKSRKANKHAVSDWMEIEKQRGISVTSSVLQFDYDGYRVNILDTPGHQDFSEDTYRTLIAADSAVMLIDAAKGVEPQTKKLFWVCHRRKLPIFTFVNKLDRYGRAPMDLMDEIEKVLHINAYPINWPIGTDGHYIGVYDRLKKQVELFDNDSSHGSKILKSTTGSLDDPAIKEAIGEANLQNLMDDIELLDMAGDEFDLAKVDAGELTPMFFGSAMTNFGVRSFLEKFLELSPEPQPRKLKDGGVVNPSDEDFTAFIFKIQANMNPAHRDRISFMRICSGVFEKGMTVWHVQGQKPVKLAQPQQFMAQERTTVEKAYPGDIIGVFDPGIFTIGDTLCNEKHPVQFEDFPIFPPEIFAKVQPKDSMKRKQFEKGIVQLAQEGAIQVFKQKDIGMESFVVGVVGVLQLEVLEYRLLNEYNAKLLLEQLPYSVARWVYADDPELIRNIKGLDNGMLVYDKLGRPVVLVSNEWNLNWILERNPGINFTQVPSEARAI
>NC_013740.1|WP_012938145.1|891641_892385_+|WecB/TagA/CpsF-family-glycosyltransferase
MDNKKPAMDILGVPVTPFSMAEAVAWLMARVEQELPTQVVTANAEIIMMAQQMPAYRALLQKTDLILADGAGTVWAGRTLGNQVPERVAGFDLFLELLKDGAHRGTKFFLFGAAPGIAEAAAAKAREIAPGVQIVGTRNGYFTKADEPEILRQINESDAQVLFAALGAPKQEFWLEEHRDALKPALRVGLGGSFDVLAGKMERAPKWMQEASLEWLFRLYKQPSRLGRMMALPKFVVKVLEAKHREK
>NC_013740.1|WP_041666107.1|892457_893123_+|phosphatidylserine-decarboxylase-family-protein
MGGGEVVTKYKYYIVKEGYPFIGTMLAVAVLAGYLAGPVFAVPPVVLMIYFVYFFRNRVLDVKQDPNILYSPADGTVMGVEEIFDKEFLNEPAKKVTIFLSVFNVHTNRAPMTGLIKYMRYTCGGYEPAFRDSAPIVNERMAIGLDNGSNRILVIQIAGILARRIVSWTSLGSRLKQGECYGMIKFGSCTELVVPRSVEILVRKGDKVQGGISIIGRQKAE
>NC_013740.1|WP_012938147.1|893119_893809_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MNYKRMVPNSISGLSQMLGLISIYLSMEKDFSLAAIFIILAILADSCDGRAARALGVSGPFGVEMDSLCDVCSFGMAPSVLIYTYSLHQLGVAGMIISGLFAFGAAMRLARFNVNVSAIHGYFQGMPAPAGACVIVTFVLGGMQISPVLTALLTVAVACLMYSDVKYPDFKGHGNPLFRVPVILAFILGALVLYSDVKAWPFVIMFTYTLCGVLNAVYVKVTGKQAVFK
>NC_013740.1|WP_012938148.1|893830_895117_+|glycosyltransferase-family-2-protein
MSTYFDIIMVPLQVLIVFFTIYYFVISLFGILPRKKEKKILTPKTTFAVIVAAHNEEKVIGELVENLHMLRYPDELYDIFVIADNCKDHTAEVARKAGALVYERFNQEEVGKGFALEWMFRQLFALDRQYDAVAIFDADNLVHPDFLKEMNNRFCKGERLIQGYLDVKNPNDSWVSGTFAINFWIVNHVWHLAKYTIGLSSVFGGTGMVIATEVLKKYGWKATCLTEDMEFTMKCLLEGIPTTWCQDAIIYDEKPQTFKASWNQRKRWAQGQFDVAGRYMWKLLKEGIRKRDIVILDGVIDVFQPYFMLISTFFVLCSTIYNFVPFYTNVLYALLPYHVWQVIGVAQYAIPAIILFKINAAPKSWFYTLFYPLLLYSWVPITILGFFHRHEHVWSHTIHTRSISFNDVLVPESAETGPKQIILPKEKR
>NC_013740.1|WP_012938149.1|895800_898560_+|magnesium-translocating-P-type-ATPase
MKKENMNKKIQAAAQVAQAKLQQAAALDVNGVLARYGASLTGLTEAQVEDSREKFGANRVTREKKKSLAARLIQAFVNPFTVILFVLAGVSTVTDIILPLKQGDMDSFNPVTVIIILTLLLISGVLRFVQETRSGDAAAKLLELITTTCTVIREGGKKQEIPLQDVTVGDLVFLSTGDMVPADLRILEAKDLFVSQSALTGESAPQEKVSQAVQDSEKKAVTELANLAFMGTNVISGSATGLVLGVGDHTLFGSMASSMAQEAPETNFTKGVNSVSWVLIRFMMAMVPLVFFINGITKGDWVAAFLFAISVAVGLTPEMLPMIVTTCLAKGAVSMSEKKTVVKSLNSIQSFGAMDVLCTDKTGTLTQDKVVLEYHLDANGRPSQRVLRYAYLNSYFQTGYKNFMDRAIIQKTEEEENADPRLVDLSENYRKVDEVPFDFARRRLSVVVIDPKGRTQMITKGAVEEMLGICSQVEQENGPVALTEDLRKRICQVADQLNDEGMRVIALARKINPSPVGAFGTKDERDMVLMGYLAFLDPPKETAAKAIEALKDHGVTTKVLTGDNEKTTRCICRQVGLPVEHILLGSDLEAMDRKQLEAEVERTTVFAKLSPDQKARVVEALQAKGHTVGFMGDGINDAPALKMADIGISVDSAVDVAKESADIILLEKSLMVLEEGIVEGRKTYANMIKYIKMTASSNFGNMFSVLAASALLPFLPMSSLQLLVLNLLYEISCIAIPWDNVDEDYLKVPRNWEASSIGSFMLWLGPTSSVFDWVTYLVLYFVICPQVLSGGLTYNHIAADAVVGQGPFAGMNLRDAYEALFQAGWFVESMWTQTLVIHMLRTPKLPFIQSHASAMLTALTCTGIALCTLLPFTGSLGRDLGFLPLPGWYFGFLALVIAGYMLLTTSIKKAYIRHYGSLL
>NC_013740.1|WP_012938151.1|898887_900132_+|amino-acid-permease
MEYTETEQMVADQEETGALEIRRLTFTEAVMLVVGATIGSGVLGLAYASRKAGWPVLLTWLLAAGFLSVASMLYVAETALRTRRPLQLSGLAEKYVGKTGSWLIFFSVGATSFCSLIAYITGCGKILSTFLGIPLEEASLLFSVGATAVVWLGLKVTGAAEKYLGLGMILMLLLLVGASFLRARVPMEEILYAHWSWGIPVFNIAVFCYAVQYIVPELARGFRDRPDKLVPAILGGTGISFLILALVPLAVFLMLPGEEITEVASLSWGRALKNPLFYLLVNFFAFCAMLTSFWAIAESFLTNCIERMGFRSERDIRSRALCLVFIVVPPIFLASSGLVGFVNAIFSAGTFGGIIMSVLPVFMVRSARKRGDQEPCWQCGWLAARPVQGLVLTVFLGSGIYALLSMAGMLPKGW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013740_2	2.1\|273839\|27\|NC_013740\|CRISPRCasFinder	273839-273865	27	MT234670	Pseudanabaena phage PA-SR01, complete genome	41289-41315	5	0.815
NC_013740_4	4.6\|882508\|34\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	882508-882541	34	NZ_CP015989	Sphingobium sp. EP60837 plasmid pEP2, complete sequence	76353-76386	7	0.794
NC_013740_4	4.5\|882443\|34\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	882443-882476	34	NZ_CP044456	Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence	175613-175646	8	0.765
NC_013740_4	4.5\|882443\|34\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	882443-882476	34	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	393286-393319	8	0.765
NC_013740_4	4.20\|883420\|33\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	883420-883452	33	NC_016571	Pseudomonas phage OBP, complete genome	74992-75024	8	0.758
NC_013740_4	4.44\|884992\|34\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	884992-885025	34	NZ_CP021407	Celeribacter manganoxidans strain DY25 plasmid pDY25-C, complete sequence	67758-67791	8	0.765
NC_013740_4	4.56\|885777\|34\|NC_013740\|CRISPRCasFinder,CRT	885777-885810	34	KC821622	Cellulophaga phage phi46:3, complete genome	52772-52805	8	0.765
NC_013740_4	4.56\|885777\|34\|NC_013740\|CRISPRCasFinder,CRT	885777-885810	34	NC_021794	Cellulophaga phage phi18:3, complete genome	52682-52715	8	0.765
NC_013740_4	4.56\|885777\|34\|NC_013740\|CRISPRCasFinder,CRT	885777-885810	34	NC_021803	Cellulophaga phage phi13:2, complete genome	52743-52776	8	0.765
NC_013740_4	4.56\|885777\|34\|NC_013740\|CRISPRCasFinder,CRT	885777-885810	34	NC_021789	Cellulophaga phage phi19:3, complete genome	56538-56571	8	0.765
NC_013740_4	4.51\|885450\|34\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	885450-885483	34	NZ_CP040820	Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence	160124-160157	9	0.735
NC_013740_4	4.6\|882508\|34\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	882508-882541	34	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	55348-55381	10	0.706
NC_013740_4	4.6\|882508\|34\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	882508-882541	34	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	62509-62542	10	0.706
NC_013740_4	4.56\|885777\|34\|NC_013740\|CRISPRCasFinder,CRT	885777-885810	34	NC_015963	UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS01, complete sequence	9751-9784	10	0.706
NC_013740_4	4.24\|883680\|35\|NC_013740\|CRISPRCasFinder,CRT,PILER-CR	883680-883714	35	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	117302-117336	11	0.686
NC_013740_4	4.56\|885777\|34\|NC_013740\|CRISPRCasFinder,CRT	885777-885810	34	NC_008607	Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence	136422-136455	12	0.647

1. spacer 2.1|273839|27|NC_013740|CRISPRCasFinder matches to MT234670 (Pseudanabaena phage PA-SR01, complete genome) position: , mismatch: 5, identity: 0.815

tcatttctgttcgtacttacacgatcc	CRISPR spacer
acatttctgctcgtacttacaccttcg	Protospacer
 ********.************  **

2. spacer 4.6|882508|34|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015989 (Sphingobium sp. EP60837 plasmid pEP2, complete sequence) position: , mismatch: 7, identity: 0.794

--tggctcgctttggcggcatcccttgcggcgattg	CRISPR spacer
cttgg--cgaactggcggcttcgcttgcggcgattg	Protospacer
  ***  **  .******* ** *************

3. spacer 4.5|882443|34|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 8, identity: 0.765

tggataaagtaggtttatcaaacgttgaaattat	CRISPR spacer
ttactcaaaaaggtttatcaaaagatgaaattat	Protospacer
* . * **. ************ * *********

4. spacer 4.5|882443|34|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 8, identity: 0.765

tggataaagtaggtttatcaaacgttgaaattat	CRISPR spacer
ttactcaaaaaggtttatcaaaagatgaaattat	Protospacer
* . * **. ************ * *********

5. spacer 4.20|883420|33|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NC_016571 (Pseudomonas phage OBP, complete genome) position: , mismatch: 8, identity: 0.758

agcccgtagatcatcagcagttcccggtagttg	CRISPR spacer
aggttgaagatcatcagcagttcccagcagtgt	Protospacer
** ..* ******************.*.***

6. spacer 4.44|884992|34|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021407 (Celeribacter manganoxidans strain DY25 plasmid pDY25-C, complete sequence) position: , mismatch: 8, identity: 0.765

cacggcggaaccggcagccgtgccaggcagcgct----	CRISPR spacer
cacggcggaactggcagcggtgc----ctgcgcatctg	Protospacer
***********.****** ****    * ****

7. spacer 4.56|885777|34|NC_013740|CRISPRCasFinder,CRT matches to KC821622 (Cellulophaga phage phi46:3, complete genome) position: , mismatch: 8, identity: 0.765

ttgaagagaaacatcaacaccatcttcctgatgc	CRISPR spacer
acgaagagaaacatcaaaacgatcttgaagaggc	Protospacer
 .*************** ** *****   ** **

8. spacer 4.56|885777|34|NC_013740|CRISPRCasFinder,CRT matches to NC_021794 (Cellulophaga phage phi18:3, complete genome) position: , mismatch: 8, identity: 0.765

ttgaagagaaacatcaacaccatcttcctgatgc	CRISPR spacer
acgaagagaaacatcaaaacgatcttgaagaggc	Protospacer
 .*************** ** *****   ** **

9. spacer 4.56|885777|34|NC_013740|CRISPRCasFinder,CRT matches to NC_021803 (Cellulophaga phage phi13:2, complete genome) position: , mismatch: 8, identity: 0.765

ttgaagagaaacatcaacaccatcttcctgatgc	CRISPR spacer
acgaagagaaacatcaaaacgatcttgaagaggc	Protospacer
 .*************** ** *****   ** **

10. spacer 4.56|885777|34|NC_013740|CRISPRCasFinder,CRT matches to NC_021789 (Cellulophaga phage phi19:3, complete genome) position: , mismatch: 8, identity: 0.765

ttgaagagaaacatcaacaccatcttcctgatgc	CRISPR spacer
acgaagagaaacatcaaaacgatcttgaagaggc	Protospacer
 .*************** ** *****   ** **

11. spacer 4.51|885450|34|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040820 (Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence) position: , mismatch: 9, identity: 0.735

cttggggcgatggcgggggcatcctttgcggctg	CRISPR spacer
tcggcggaactggcgggggcatcctgtgcggttg	Protospacer
.. * ** . *************** *****.**

12. spacer 4.6|882508|34|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 10, identity: 0.706

tggctcgctttggcggcatcccttgcggcgattg	CRISPR spacer
tctgccgctgtggcggcatcgcttgcggccgcgg	Protospacer
*   .**** ********** ******** .. *

13. spacer 4.6|882508|34|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 10, identity: 0.706

tggctcgctttggcggcatcccttgcggcgattg	CRISPR spacer
tctgccgctgtggcggcatcgcttgcggccgcgg	Protospacer
*   .**** ********** ******** .. *

14. spacer 4.56|885777|34|NC_013740|CRISPRCasFinder,CRT matches to NC_015963 (UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS01, complete sequence) position: , mismatch: 10, identity: 0.706

ttgaagagaaacatcaacaccatcttcctgatgc	CRISPR spacer
ctggccgaccacatcaacaccctgttcctgatgc	Protospacer
.**.  ..  *********** * **********

15. spacer 4.24|883680|35|NC_013740|CRISPRCasFinder,CRT,PILER-CR matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 11, identity: 0.686

cggaccggcagcggcgccaagaaatccctggatgg	CRISPR spacer
tcgaccggcagcggcgccaacagatccggcagcgc	Protospacer
. ****************** *.****   ...*

16. spacer 4.56|885777|34|NC_013740|CRISPRCasFinder,CRT matches to NC_008607 (Pelobacter propionicus DSM 2379 plasmid pPRO1, complete sequence) position: , mismatch: 12, identity: 0.647

ttgaagagaaacatcaacaccatcttcctgatgc	CRISPR spacer
aggaagaaaaacatcaacacgatcttttgagctg	Protospacer
  *****.************ *****.. ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

410828 : 419650

Staphylococcus_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012937744.1\|410828_411665_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	1.1e-21	36.2
WP_012937745.1\|411649_412513_+	energy-coupling factor transporter ATPase	W8CYL7	Bacillus_phage	7.4e-10	27.9
WP_012937746.1\|412506_413313_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_012937747.1\|413309_414047_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_012937748.1\|414287_416231_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	6.8e-11	30.0
WP_176767961.1\|416688_417768_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2I2L4R9	Orpheovirus	2.4e-50	35.2
WP_012937750.1\|417772_418411_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.4e-37	42.6
WP_012937751.1\|418423_419650_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-105	49.9

DBSCAN-SWA_2

769672 : 778307

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012938045.1\|769672_771007_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	5.1e-18	27.9
WP_012938046.1\|771027_771873_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	1.0e-19	30.3
WP_012938047.1\|771869_772472_+	energy-coupled thiamine transporter ThiT	NA	NA	NA	NA
WP_049763440.1\|772642_773170_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	7.0e-11	42.4
WP_012938049.1\|773188_773386_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_012938050.1\|773431_773785_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_012938051.1\|773883_774249_+	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	5.5e-15	41.7
WP_012938052.1\|774398_774665_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_012938053.1\|775415_776684_+	uracil permease	Q9KX94	Enterobacteria_phage	2.6e-72	41.3
WP_012938054.1\|776762_778307_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.7e-20	31.8

DBSCAN-SWA_3

858003 : 866179

Catovirus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012938121.1\|858003_859002_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.0e-22	31.5
WP_041666099.1\|859797_860100_+	hypothetical protein	NA	NA	NA	NA
WP_012938122.1\|860268_861132_+	LicD family protein	A0A1V0SD50	Indivirus	1.3e-06	43.8
WP_012938123.1\|861128_861851_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_012938124.1\|861865_862915_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9KZK0	Tupanvirus	8.7e-29	29.7
WP_012938125.1\|862979_863954_+	glycosyltransferase	A0A1V0SAH6	Catovirus	3.3e-14	35.3
WP_012938126.1\|864026_865010_+	glycosyltransferase	A0A1V0SAH6	Catovirus	2.4e-12	45.1
WP_012938127.1\|865204_866179_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	3.3e-14	28.3

DBSCAN-SWA_4

1206933 : 1216868

Erysipelothrix_phage(44.44%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012938430.1\|1206933_1207851_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.2e-13	25.4
WP_012938431.1\|1208121_1208478_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012938432.1\|1208474_1208768_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012938434.1\|1209073_1209517_-	hypothetical protein	NA	NA	NA	NA
WP_012938435.1\|1209677_1210574_-	amidoligase family protein	A0A2K9V489	Faecalibacterium_phage	4.9e-65	43.4
WP_012938436.1\|1210674_1210908_-	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	7.5e-18	57.5
WP_012938437.1\|1210891_1211698_-	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	1.4e-39	39.8
WP_012938438.1\|1211785_1213036_-	ParB N-terminal domain-containing protein	E4ZFL4	Streptococcus_phage	5.6e-99	45.3
WP_041666182.1\|1213048_1213594_-\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	3.3e-56	58.6
WP_012938440.1\|1213736_1214123_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	4.4e-39	58.1
WP_012938441.1\|1214250_1214679_+	hypothetical protein	NA	NA	NA	NA
WP_148213961.1\|1214770_1215205_-	hypothetical protein	NA	NA	NA	NA
WP_012938443.1\|1215219_1216569_-	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	6.1e-152	60.0
WP_012938444.1\|1216565_1216868_-	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	4.3e-21	55.6

DBSCAN-SWA_5

1251424 : 1296637

Streptococcus_phage(60.0%)

transposase,integrase

attL 1295686:1295701|attR 1296663:1296678

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012938478.1\|1251424_1252717_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	6.6e-79	40.1
WP_012938479.1\|1252785_1252995_-	helix-turn-helix domain-containing protein	A0A1S5SF07	Streptococcus_phage	7.5e-09	48.2
WP_143025783.1\|1253106_1253439_-	peptidase M24	NA	NA	NA	NA
WP_012938481.1\|1253656_1254211_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	2.9e-15	36.2
WP_012938482.1\|1254207_1254522_-	hypothetical protein	NA	NA	NA	NA
WP_012938483.1\|1254506_1254806_-	hypothetical protein	NA	NA	NA	NA
WP_012938484.1\|1254823_1255042_-	hypothetical protein	NA	NA	NA	NA
WP_012938485.1\|1255261_1256014_+	hypothetical protein	NA	NA	NA	NA
WP_012938486.1\|1256041_1256548_+	hypothetical protein	NA	NA	NA	NA
WP_012938487.1\|1256937_1258926_-	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	7.4e-263	66.0
WP_012938488.1\|1258986_1259166_-	hypothetical protein	NA	NA	NA	NA
WP_012938490.1\|1259650_1260799_-	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	1.7e-126	59.0
WP_012938491.1\|1260788_1261100_-	hypothetical protein	NA	NA	NA	NA
WP_012938492.1\|1261065_1261251_-	hypothetical protein	NA	NA	NA	NA
WP_012938493.1\|1261380_1261956_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012938494.1\|1262336_1263263_+	hypothetical protein	NA	NA	NA	NA
WP_012938495.1\|1263255_1263717_+	hypothetical protein	NA	NA	NA	NA
WP_012938496.1\|1265882_1266194_-	hypothetical protein	NA	NA	NA	NA
WP_081443263.1\|1267121_1267490_+	hypothetical protein	NA	NA	NA	NA
WP_012938498.1\|1267536_1268349_-	hypothetical protein	NA	NA	NA	NA
WP_012938499.1\|1268480_1269641_-	hypothetical protein	NA	NA	NA	NA
WP_012938501.1\|1270143_1270563_-	hypothetical protein	NA	NA	NA	NA
WP_012938502.1\|1270790_1271195_-	hypothetical protein	NA	NA	NA	NA
WP_012938503.1\|1271278_1271917_-	DUF1266 domain-containing protein	NA	NA	NA	NA
WP_012938504.1\|1272152_1272812_-	aquaporin	NA	NA	NA	NA
WP_012938505.1\|1272899_1279103_-	YadA-like family protein	NA	NA	NA	NA
WP_012938506.1\|1280665_1281964_-	recombinase family protein	M1NSJ1	Streptococcus_phage	1.4e-68	47.5
WP_012938507.1\|1282009_1282174_-	hypothetical protein	NA	NA	NA	NA
WP_012938508.1\|1282841_1283285_-	hypothetical protein	NA	NA	NA	NA
WP_012938509.1\|1283367_1283523_-	hypothetical protein	NA	NA	NA	NA
WP_148213934.1\|1283624_1284515_-	hypothetical protein	NA	NA	NA	NA
WP_012937547.1\|1284944_1285349_+\|transposase	transposase	NA	NA	NA	NA
WP_012938408.1\|1285360_1286359_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.2e-23	31.5
WP_012938510.1\|1286715_1287084_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012938511.1\|1287080_1287359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041666193.1\|1287773_1288838_+	Fic family protein	NA	NA	NA	NA
WP_012938513.1\|1289610_1290264_-	DsbA family protein	NA	NA	NA	NA
WP_012938514.1\|1290295_1291174_-	radical SAM protein	NA	NA	NA	NA
WP_041666194.1\|1291415_1292531_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	3.9e-88	47.9
WP_012938516.1\|1292532_1292928_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.5e-50	68.7
WP_012938517.1\|1293072_1293387_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_187287510.1\|1293656_1293812_-	hypothetical protein	NA	NA	NA	NA
WP_012938518.1\|1294052_1294676_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
1295686:1295701	attL	NA	NA	NA	NA
WP_012938520.1\|1295707_1296637_-\|integrase	site-specific integrase	A8ATM2	Listeria_phage	1.5e-80	48.9
WP_012938520.1\|1295707_1296637_-\|integrase	site-specific integrase	A8ATM2	Listeria_phage	1.5e-80	48.9
1296663:1296678	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1408649 : 1419189

Prochlorococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012938623.1\|1408649_1410161_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.8e-59	34.1
WP_012938624.1\|1410308_1411592_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_074704204.1\|1411605_1412205_-	IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	1.4e-52	57.9
WP_012938626.1\|1412220_1412832_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-28	42.5
WP_012938627.1\|1412824_1413880_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.7e-69	42.6
WP_012938628.1\|1413892_1415335_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.1e-61	34.7
WP_012938629.1\|1415351_1415855_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.3e-24	44.5
WP_012938630.1\|1416234_1416708_+	hypothetical protein	NA	NA	NA	NA
WP_012938631.1\|1416816_1419189_-	endonuclease MutS2	A0A1V0SC35	Catovirus	1.6e-17	32.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013740

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection