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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_013757 Geodermatophilus obscurus DSM 43160, complete sequence 10 crisprs cas3,DEDDh,Cas9_archaeal,csa3,RT,cas4,WYL,casR 2 4 5 0

Results visualization

1. NC_013757
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_1 515553-515643 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_2 1717208-1717295 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_3 2230406-2230614 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_4 2770029-2770179 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_5 3456002-3456105 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_6 3588876-3589084 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_7 4264354-4264465 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_8 5167306-5167417 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_9 5169075-5169236 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013757_10 5306878-5306978 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_013757.1 3589085-3589124 0 1.0
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_013757.1 3589130-3589169 0 1.0
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_013757.1 3589175-3589214 0 1.0
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_013757.1 3589265-3589304 0 1.0
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_013757.1 3589310-3589349 0 1.0
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_013757.1 3589220-3589259 1 0.975
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_013757.1 3589355-3589394 1 0.975
NC_013757_3 3.1|2230437|69|NC_013757|CRISPRCasFinder 2230437-2230505 69 NC_013757.1 2230337-2230405 9 0.87

1. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to position: 3589085-3589124, mismatch: 0, identity: 1.0

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
cccggcggcaccgacggcgagaccggcggaggcagcggaa	Protospacer
****************************************

2. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to position: 3589130-3589169, mismatch: 0, identity: 1.0

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
cccggcggcaccgacggcgagaccggcggaggcagcggaa	Protospacer
****************************************

3. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to position: 3589175-3589214, mismatch: 0, identity: 1.0

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
cccggcggcaccgacggcgagaccggcggaggcagcggaa	Protospacer
****************************************

4. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to position: 3589265-3589304, mismatch: 0, identity: 1.0

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
cccggcggcaccgacggcgagaccggcggaggcagcggaa	Protospacer
****************************************

5. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to position: 3589310-3589349, mismatch: 0, identity: 1.0

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
cccggcggcaccgacggcgagaccggcggaggcagcggaa	Protospacer
****************************************

6. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to position: 3589220-3589259, mismatch: 1, identity: 0.975

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
cccggcggcaccggcggcgagaccggcggaggcagcggaa	Protospacer
*************.**************************

7. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to position: 3589355-3589394, mismatch: 1, identity: 0.975

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
cccggcggcaccggcggcgagaccggcggaggcagcggaa	Protospacer
*************.**************************

8. spacer 3.1|2230437|69|NC_013757|CRISPRCasFinder matches to position: 2230337-2230405, mismatch: 9, identity: 0.87

cacccccctggaaggaccccgtcctccccacccctcgtgagaggaccccctgccccccgc	CRISPR spacer
cacccccctggaaggaccccgtcctccccacccctcgtgagaggaccccctgccccccgc	Protospacer
************************************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP054616 Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence 151819-151845 3 0.889
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_011961 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence 712805-712831 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP011665 Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence 357048-357074 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_LR594663 Variovorax sp. RA8 plasmid 2 346980-347006 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP024892 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence 67562-67588 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP018231 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3 49556-49582 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP016292 Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence 127010-127036 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP032703 Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence 335286-335312 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_008383 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence 115802-115828 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP015095 Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence 64073-64099 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP054841 Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence 206290-206316 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 MN369758 Gordonia phage NHagos, complete genome 23013-23039 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 1572188-1572214 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 1194720-1194746 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP022192 Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence 30128-30154 4 0.852
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_010849 Streptomyces sp. 44030 plasmid pRL1, complete sequence 24296-24322 4 0.852
NC_013757_8 8.2|5167367|28|NC_013757|CRISPRCasFinder 5167367-5167394 28 LN997843 Streptomyces reticuli genome assembly TUE45, plasmid : II 195926-195953 5 0.821
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_015685 Oligotropha carboxidovorans OM5 plasmid pOC167, complete sequence 138306-138332 5 0.815
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP029777 Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence 455863-455889 5 0.815
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 244823-244849 5 0.815
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_AP022578 Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence 98175-98201 5 0.815
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_016585 Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence 10085-10111 5 0.815
NC_013757_8 8.2|5167367|28|NC_013757|CRISPRCasFinder 5167367-5167394 28 NZ_CP042262 Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence 15437-15464 6 0.786
NC_013757_8 8.2|5167367|28|NC_013757|CRISPRCasFinder 5167367-5167394 28 NZ_CP032328 Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence 45028-45055 6 0.786
NC_013757_9 9.1|5169111|27|NC_013757|CRISPRCasFinder 5169111-5169137 27 NC_008712 Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence 216292-216318 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP016082 Streptomyces sp. SAT1 plasmid unnamed2, complete sequence 295448-295474 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 601363-601389 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 94809-94835 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP015094 Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence 48946-48972 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1016707-1016733 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_016624 Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence 269670-269696 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 1486338-1486364 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP046575 Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence 66883-66909 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 116249-116275 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_012520 Rhodococcus opacus B4 plasmid pROB01, complete sequence 223297-223323 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP029834 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence 100183-100209 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NC_013859 Azospirillum sp. B510 plasmid pAB510e, complete sequence 256345-256371 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP054620 Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence 426017-426043 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 106963-106989 6 0.778
NC_013757_9 9.2|5169174|27|NC_013757|CRISPRCasFinder 5169174-5169200 27 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 646036-646062 6 0.778
NC_013757_8 8.2|5167367|28|NC_013757|CRISPRCasFinder 5167367-5167394 28 NC_013856 Azospirillum sp. B510 plasmid pAB510b, complete sequence 18834-18861 7 0.75
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 640512-640551 10 0.75
NC_013757_6 6.2|3589024|40|NC_013757|PILER-CR 3589024-3589063 40 NC_020062 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence 703447-703486 11 0.725

1. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.889

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccgatcaccccggcggtcc	Protospacer
***********.***.********* *

2. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
ggccgctgccggtcatcccggcgggtg	Protospacer
 ***********************   

3. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccggtcatcccggcctgcc	Protospacer
**********************    *

4. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccggtcatcctggcgatct	Protospacer
******************.****.* .

5. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctggcgatcatcccggcggttt	Protospacer
******** **.************* .

6. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP018231 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
ctccgccgccggtcatcccggcggcgg	Protospacer
* ****.*****************.* 

7. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP016292 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
ctccgccgccggtcatcccggcggcgg	Protospacer
* ****.*****************.* 

8. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccgggcatcccgccggcgt	Protospacer
************ ******* ***.*.

9. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_008383 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
ctccgccgccggtcatcccggcggcgg	Protospacer
* ****.*****************.* 

10. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP015095 (Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgatgccggtgatcccggcgcagc	Protospacer
***** ******* *********  **

11. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccggtctgcccggcgccgc	Protospacer
**************  ******* .**

12. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to MN369758 (Gordonia phage NHagos, complete genome) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccgttgatcccggcgatac	Protospacer
*********** * *********.*.*

13. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccggtcatcaccgcgccgc	Protospacer
***************** * *** .**

14. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccggtcatcaccgcgccgc	Protospacer
***************** * *** .**

15. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP022192 (Yangia pacifica strain YSBP01 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgcaggtgatcccggcgatcc	Protospacer
********* *** *********.* *

16. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_010849 (Streptomyces sp. 44030 plasmid pRL1, complete sequence) position: , mismatch: 4, identity: 0.852

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgccgccggtcagcccggcgccgc	Protospacer
******.******** ******* .**

17. spacer 8.2|5167367|28|NC_013757|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 5, identity: 0.821

aacgggcggcctcgtcccgggtcccgcc	CRISPR spacer
tacgggccgcctcgtcccggttccgggc	Protospacer
 ****** ************ *** * *

18. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_015685 (Oligotropha carboxidovorans OM5 plasmid pOC167, complete sequence) position: , mismatch: 5, identity: 0.815

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
aaccgccgccggtcatcccggcggcgg	Protospacer
 .****.*****************.* 

19. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.815

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
tggcgctgcaggtcatcacggcggtgt	Protospacer
.* ****** ******* ********.

20. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.815

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgcccgtcatctcggcgacga	Protospacer
********** ******.*****..* 

21. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 5, identity: 0.815

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
ccaggctgccgatcatcccgccggtgc	Protospacer
*   *******.******** ******

22. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 5, identity: 0.815

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
ccgcgctgccggtcatcctggcgctga	Protospacer
*  ***************.**** ** 

23. spacer 8.2|5167367|28|NC_013757|CRISPRCasFinder matches to NZ_CP042262 (Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

aacgggcggcctcgtcccgggtcccgcc	CRISPR spacer
gccgggcggcctcgtcctgggtcatgcg	Protospacer
. ***************.***** .** 

24. spacer 8.2|5167367|28|NC_013757|CRISPRCasFinder matches to NZ_CP032328 (Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence) position: , mismatch: 6, identity: 0.786

aacgggcggcctcgtcccgggtcccgcc	CRISPR spacer
caccggcggcctcgtcccaggtccgcac	Protospacer
 ** **************.*****   *

25. spacer 9.1|5169111|27|NC_013757|CRISPRCasFinder matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 6, identity: 0.778

ggtcggtgccggaccctccgctggtct	CRISPR spacer
tgggtgtgccggacccgccgctggtcc	Protospacer
 *   *********** *********.

26. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
acgcgctgccggtcatcccgccggccc	Protospacer
   ***************** ***. *

27. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
gcgcgctgccggtctccccggcggtgg	Protospacer
   *********** .********** 

28. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
gttcgccgcccgtcatcccggcggtgt	Protospacer
  .***.*** ***************.

29. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP015094 (Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccgctgccggtcagcccgccgcccg	Protospacer
*************** **** ** .  

30. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccggtgccggtcatcccggacagga	Protospacer
***** ***************  . * 

31. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
tgccgctgccggtcatcccgcacctga	Protospacer
.*******************    ** 

32. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccggtgccggtcatcccggacagga	Protospacer
***** ***************  . * 

33. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP046575 (Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
gggtcatgccggtcattccggcggtgc	Protospacer
 * .  **********.**********

34. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccggtgccggtcatcccggacagga	Protospacer
***** ***************  . * 

35. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
gggtcatgccggtcattccggcggtgc	Protospacer
 * .  **********.**********

36. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
tgccgctgccggtcatcccgcatctga	Protospacer
.*******************    ** 

37. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
tgccgctgccggtcatcccgcatctga	Protospacer
.*******************    ** 

38. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
tgccgctgccggtcatcccgcacctga	Protospacer
.*******************    ** 

39. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccggtgccggtcatcccggacagga	Protospacer
***** ***************  . * 

40. spacer 9.2|5169174|27|NC_013757|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 6, identity: 0.778

cgccgctgccggtcatcccggcggtgc	CRISPR spacer
cgccggtgccggtcatcccggacagga	Protospacer
***** ***************  . * 

41. spacer 8.2|5167367|28|NC_013757|CRISPRCasFinder matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 7, identity: 0.75

aacgggcggcctcgtcccgggtcccgcc	CRISPR spacer
gcgcggcggcctcctcccgcgtcccgcg	Protospacer
.   ********* ***** ******* 

42. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 10, identity: 0.75

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
accggcggcaccgaaagcgagaccggcggccgtcccgcca	Protospacer
 ************* .*************  *.  **  *

43. spacer 6.2|3589024|40|NC_013757|PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 11, identity: 0.725

cccggcggcaccgacggcgagaccggcggaggcagcggaa	CRISPR spacer
accggcggcaccgaaagcgagaccggcggccgtccggcca	Protospacer
 ************* .*************  *.   *  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 657038 : 664275 8 Pandoravirus(33.33%) protease NA
DBSCAN-SWA_2 2047235 : 2109079 51 Mycobacterium_phage(33.33%) transposase,protease NA
DBSCAN-SWA_3 2639596 : 2745861 81 Mycobacterium_phage(18.18%) transposase,integrase attL 2643792:2643811|attR 2750038:2750055
DBSCAN-SWA_4 3043617 : 3116080 58 uncultured_Caudovirales_phage(20.0%) transposase,integrase attL 3088605:3088651|attR 3115032:3115078
DBSCAN-SWA_5 3653889 : 3716905 53 Mycobacterium_phage(28.57%) transposase,integrase attL 3654062:3654092|attR 3713952:3713982
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage