CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013956	Pantoea ananatis LMG 20103, complete sequence	2 crisprs	cas3,DinG,DEDDh,csa3	3	16	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013956_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013956_1

679514-680736

Orphan

Consensus_repeat	Method
GCCGGTTACGGCAGTACCCAGAC	CRISPRCasFinder

25 spacers

The CRISPR arrays of NC_013956_1

>merge|NC_013956|1|679514-680736|CRISPRCasFinder
GCCGGTTATGGTAGCACCGGTACAGCGGGATCAGACAGCACATTAGTCGCGGGCTACGGCAGTACCCAAACCGCAGGTGAAGAGAGCAGCCAGATGGCGGGTTACGGCAGCACGCAGACCGGCATGAAAGGCAGCGATCTCACCGCCGGTTACGGCAGTACCGGCACGGCGGGTGACGACAGCTCCCTGATCGCCGGTTACGGCAGTACCCAGACGGCGGGCGAAGACAGCTCGCTGACAGCCGGTTACGGCAGCACGCAGACCGCGCAGAAGGGCAGCGATCTTACCGCGGGTTATGGCAGTACCGGCACGGCGGGTGCCGACAGTTCACTAATCGCGGGCTACGGCAGCACCCAGACGGCCGGGGAAGAGAGCACTCAGACAGCCGGTTACGGCAGCACCCAGACCGCGCAGAAGGGCAGCGACCTTACGGCCGGTTACGGCAGTACCGGTACGGCGGGTGACGACAGCTCCCTGATCGCCGGTTACGGCAGTACCCAGACGGCGGGCGAAGACAGCTCGCTGACAGCCGGTTACGGCAGTACCCAGACCGCGCAGAAGGGCAGCGATCTTACTGCAGGTTATGGCAGTACCGGCACGGCGGGTGCCGACAGTTCATTAATCGCGGGCTACGGTAGCACCCAGACGGCCGGGGAAGAGAGCACCCAGACAGCCGGTTATGGCAGCACCCAGACCGCGCAGAAGGGCAGCGACCTTACGGCCGGTTACGGCAGTACCGGTACGGCGGGTGACGACAGCTCTCTGATCGCCGGTTACGGCAGTACCCAGACGGCGGGCGAAGACAGCTCACTGACAGCCGGTTACGGCAGTACCCAGACCGCGCAGAAGGGCAGCGATCTTACGGCCGGTTATGGTAGTACCTCTACGGCAGGCTATGAAAGTTCATTGATCGCGGGCTATGGCAGTACCCAGACAGCGGGTTACGGTAGCACGCTGACAGCGGGTTACGGCAGTACGCAGACCGCGCAGAACGAAAGCGATCTCATCACCGGCTATGGCAGTACGTCTACAGCCGGGGCAAATAGTTCACTGATCGCAGGCTATGGCAGCACGCAGACAGCCAGCTACAACAGTGTGCTAACGGCGGGCTACGGCAGTACCCAGACGGCGAGAGAAGGCAGTGACCTCACTGCCGGGTACGGCAGCACCGGCACGGCAGGCTCGGACAGCTCAATCATTGCAGGTTACGGCAGCACCCAGAC

>NC_013956|1|1|679514-680736|CRISPRCasFinder
GCCGGTTATGGTAGCACCGGTAC	AGCGGGATCAGACAGCACATTAGTC
GCGGGCTACGGCAGTACCCAAAC	CGCAGGTGAAGAGAGCAGCCAGATG
GCGGGTTACGGCAGCACGCAGAC	CGGCATGAAAGGCAGCGATCTCACC
GCCGGTTACGGCAGTACCGGCAC	GGCGGGTGACGACAGCTCCCTGATC
GCCGGTTACGGCAGTACCCAGAC	GGCGGGCGAAGACAGCTCGCTGACA
GCCGGTTACGGCAGCACGCAGAC	CGCGCAGAAGGGCAGCGATCTTACC
GCGGGTTATGGCAGTACCGGCAC	GGCGGGTGCCGACAGTTCACTAATC
GCGGGCTACGGCAGCACCCAGAC	GGCCGGGGAAGAGAGCACTCAGACA
GCCGGTTACGGCAGCACCCAGAC	CGCGCAGAAGGGCAGCGACCTTACG
GCCGGTTACGGCAGTACCGGTAC	GGCGGGTGACGACAGCTCCCTGATC
GCCGGTTACGGCAGTACCCAGAC	GGCGGGCGAAGACAGCTCGCTGACA
GCCGGTTACGGCAGTACCCAGAC	CGCGCAGAAGGGCAGCGATCTTACT
GCAGGTTATGGCAGTACCGGCAC	GGCGGGTGCCGACAGTTCATTAATC
GCGGGCTACGGTAGCACCCAGAC	GGCCGGGGAAGAGAGCACCCAGACA
GCCGGTTATGGCAGCACCCAGAC	CGCGCAGAAGGGCAGCGACCTTACG
GCCGGTTACGGCAGTACCGGTAC	GGCGGGTGACGACAGCTCTCTGATC
GCCGGTTACGGCAGTACCCAGAC	GGCGGGCGAAGACAGCTCACTGACA
GCCGGTTACGGCAGTACCCAGAC	CGCGCAGAAGGGCAGCGATCTTACG
GCCGGTTATGGTAGTACCTCTAC	GGCAGGCTATGAAAGTTCATTGATC
GCGGGCTATGGCAGTACCCAGAC	AGCGGGTTACGGTAGCACGCTGACA
GCGGGTTACGGCAGTACGCAGAC	CGCGCAGAACGAAAGCGATCTCATC
ACCGGCTATGGCAGTACGTCTAC	AGCCGGGGCAAATAGTTCACTGATC
GCAGGCTATGGCAGCACGCAGAC	AGCCAGCTACAACAGTGTGCTAACG
GCGGGCTACGGCAGTACCCAGAC	GGCGAGAGAAGGCAGTGACCTCACT
GCCGGGTACGGCAGCACCGGCAC	GGCAGGCTCGGACAGCTCAATCATT
GCAGGTTACGGCAGCACCCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013956.2\|WP_080561331.1\|691351_692062_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_013956.2\|WP_049791779.1\|672482_672992_-\|hypothetical-protein	unknown	unknown	unknown
NC_013956.2\|WP_148258813.1\|687987_688206_-\|hypothetical-protein	unknown	unknown	unknown
NC_013956.2\|WP_014595268.1\|690701_691208_+\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|378715
NC_013956.2\|WP_013024476.1\|668820_669582_-\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NC_013956.2\|WP_049791778.1\|670913_671504_-\|hypothetical-protein	unknown	unknown	unknown
NC_013956.2\|WP_041457465.1\|689427_690570_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_013956.2\|WP_013024488.1\|683819_684587_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NC_013956.2\|WP_013024482.1\|672997_673966_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215490
NC_013956.2\|WP_013024477.1\|669637_670474_-\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NC_013956.2\|WP_013024492.1\|688285_688954_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|236680
NC_013956.2\|WP_013024479.1\|671637_672291_-\|hypothetical-protein	unknown	unknown	unknown
NC_013956.2\|WP_041457942.1\|674356_674671_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274511
NC_013956.2\|WP_014595264.1\|685802_687200_+\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_013956.2\|WP_013024487.1\|682241_683495_-\|D-galactonate-dehydratase-family-member-RspA	unknown	unknown	gnl\|CDD\|239438
NC_013956.2\|WP_014595259.1\|677138_678476_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_013956.2\|WP_013024484.1\|675391_677128_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NC_013956.2\|WP_041457464.1\|684628_685660_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|182130
NC_013956.2\|WP_013024475.1\|667315_668395_-\|glycoside-hydrolase-family-88-protein	unknown	unknown	gnl\|CDD\|226678
NC_013956.2\|WP_013024491.1\|687299_688010_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097

Protein	Function_ID	Function_description	E-value
NC_013956.2\|WP_080561331.1\|691351_692062_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.13325e-26
NC_013956.2\|WP_014595268.1\|690701_691208_+\|RcnB-family-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	9.97795e-17
NC_013956.2\|WP_013024476.1\|668820_669582_-\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	1.86145e-168
NC_013956.2\|WP_041457465.1\|689427_690570_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.66629e-45
NC_013956.2\|WP_013024488.1\|683819_684587_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.59459e-101
NC_013956.2\|WP_041457464.1\|684628_685660_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NC_013956.2\|WP_013024477.1\|669637_670474_-\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NC_013956.2\|WP_013024492.1\|688285_688954_-\|YecA-family-protein	gnl\|CDD\|236680	PRK10396, PRK10396, hypothetical protein; Provisional.	4.1576e-147
NC_013956.2\|WP_013024482.1\|672997_673966_-\|hypothetical-protein	gnl\|CDD\|215490	PLN02903, PLN02903, aminoacyl-tRNA ligase.	0.00995516
NC_013956.2\|WP_041457942.1\|674356_674671_+\|hypothetical-protein	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	0.00946454
NC_013956.2\|WP_014595264.1\|685802_687200_+\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.01622e-144
NC_013956.2\|WP_013024487.1\|682241_683495_-\|D-galactonate-dehydratase-family-member-RspA	gnl\|CDD\|239438	cd03322, RspA, The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.	1.34263e-173
NC_013956.2\|WP_014595259.1\|677138_678476_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.10133e-115
NC_013956.2\|WP_013024484.1\|675391_677128_+\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	4.07419e-178
NC_013956.2\|WP_013024475.1\|667315_668395_-\|glycoside-hydrolase-family-88-protein	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	6.58791e-96
NC_013956.2\|WP_013024491.1\|687299_688010_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	5.11816e-52

>NC_013956.2|WP_014595259.1|677138_678476_+|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein
MLNNPPTLNPDVSNRKPEGRKAVLTVKDIKHGYDKTHGEVLILDDVNLTLQEGEIVGLLGRSGSGKSTLLRIISGLITPGSGAVEYLGKPLNGPAKGVAMVFQTFALFPWLTVLQNVEAGLEALGVEKAERRKRALAAIDLIGLDGFENAYPRELSGGMRQRVGFARALVVDPTLLLMDEPFSALDVLTAETLRTDLLDLWNEGQMPMKSVLIVTHNIEEAVFMCDRILVLSSNPGRVVAEIKVPFGHPRNRLDPAFRRLVDDVYTQMTARPTSDNVKKSLRLGTHLPQVSTNLMAGLIETLAAAPYHGRADMPDVARSLHLEVDELFPIAEVLQSLGFADVREGDIFLTPPARVFAESDTQQRKVMFADHLLRYVPLAALIKTVLDERPGHRAPRMRFEQELEDSLADSAAKETLDSVINWGRYAEIFSYNDQTEYFSLEDVEF
>NC_013956.2|WP_013024484.1|675391_677128_+|ABC-transporter-permease-subunit
MNFRFTMLAANRRLLPNVWDAVAFPLIICLIAMVAVGFHQTLMPIDSLKTQAISLDPTNLPEYAMRTTLRMLVAMLASLVFSLIYGTLAAKSRRAEKVLVPILDILQSVPVLGYISFTVTFFIALFPGQVLGVELAAIFALFTSQAWNMTFSFYQSLRTVPADLVEVSRGFHLTGWQRFWKLDAPFAVPGLVWNMMMSMSGGWFFIVASEAITVGNNTFTLPGVGGYLAQAILHKDIHAVGWVLLTMVIVILAYDQLLFRPLVAWADKFRMENTRSGNAPTSWVRDLMRRTRLIHQIFTPLRLLLSALARISWRWPTAAPVRFENNTRRASRLGDIVWGAFVILLTLYVVYRVITYVQIGVTLNEVKHVFTLGLITLLRVTVLILISSLIWVPLGVMIGLRPALAGKIQPVAQFLAAFPANLMFPVFVIMIVHFHLNPDIWLSPLIVLGTQWYILFNVVAGTTAFPNDYKEAAANFHIRGWQWWRQVMLPGIFPYYITGAITASGGAWNASIVSEFVQWGNTQVTAHGLGAYIAQTTAAGDFPKIILGIAVMSLFVTLFNRLLWRPLYVYAESKFRAN
>NC_013956.2|WP_041457942.1|674356_674671_+|hypothetical-protein
MKNRVLVAFSLLALSGCSTMSSNEAIPPLQAETAKMLGLSSSDEITVTNVSATKPDTLGSQMLSYRATTDKGRIFDCQSQMIPGILGQEPVVTVPKCTPVKVHN
>NC_013956.2|WP_013024482.1|672997_673966_-|hypothetical-protein
MALPGQSSNNLPDYNIARRLGMVSADDIDFTALANRLDCTRDFSQVGIIYSDGREQWLVRPSRRYASSNQSNVSHVVITKVPTVTSQTAAKSITDTLSKPSLANEITSTAFSCGAAVATAFLAIAAGSTVPLTAGATGVVAGIIAAGTFATVGQCINGGARLLLISAGHEESVNWIDSQGWYTATCTALDLISLAGAGAGLKGIFDTYKLMRGASSARAIEWLKTLSRAERKRITQEIIRIQNPGISNSGIKAIMHMGGYPKRFPTEALQKSLQKELANAIINTSAFAGSALTGTIRNPQTVSQSGKYIIGLLQSFNATGIN
>NC_013956.2|WP_049791779.1|672482_672992_-|hypothetical-protein
MLKKLKKTLTLSKSYSKKIDTFDIAKLEKVKDEMIDEMEEPVGWHTMGLPLVASCFLAIFSFVIPQTSLWQGIYTLMGWPKYALMIGIMVAAFFLCFPCCPVIVIYLERQLCFFKISSTCPCDNNFILFVLCLLLFLFMADRLRRACVTVWTFISGTVCCLSFLEVSGY
>NC_013956.2|WP_013024479.1|671637_672291_-|hypothetical-protein
MDEISTKFFNKNAHGRLIIMFKHLKNALALSEKFSAKIVKGNDEQLESVKDEMMNEMDASIGWHTMGIPLIISAILTVVSFSLPQISIWHGISKWMDWSKNAFFIGAMITDLVGCIIIIPLMAVVGKGQYLALKSYVYIAFSTATLAISFLIYTILGTLLGADIKTTHLIVSIIGVILIILSFMCINSLVFYRMIAYCLHNRAWRKQIEMQREKPHL
>NC_013956.2|WP_049791778.1|670913_671504_-|hypothetical-protein
MFYNLKSSLALSKKVTAQISKANDEQLESIKDEMTDKMEVPIGWHIMGIPLSSSLICSLFSCAMSLMPLGIKMIDNFNWPKYPTLTGVFITSIIYCLFVYISAFSIVRGFYHAIKIYLAIYVFTTTLASLNFIFDIVAIYQARMHSAWLISSSVISMLLIIFCIRSLNSRMFYKSVAYYLFARAWRKKLYRQKYKP
>NC_013956.2|WP_013024477.1|669637_670474_-|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSIHSAHANALDTQGLRDEFLIEKIFVPDEFTMVYSHIDRIIVGGVMPVGQAVAIGNDVGKQLGVSYFLERRELGMINIGGPGQVTIDGEDYEIGHREALYIGKGAREVLFSSLAPHRPAKFYYNCAPAHKTLPIRKVTAGDAAAVTLGDNLTSNRRTINKYLVPDVLETCQLSMGLTQLEPGNLWNTMPCHTHERRMEVYLYFDMDDDACVFHMMGEPQETRHLLVHNEQAVISPAWSIHSGVGTKAYTFIWGTVGENQVFDDMDHISVKDLR
>NC_013956.2|WP_013024476.1|668820_669582_-|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILNAFSLQDKIAVVSGCNTGLGQAMALGLAEAGCNIVGINQVEPDETIKQVTALGRRFLSLKADLRNIDVIPSLLDSAIACFDRIDILVNNAGMIRREDAINFSEQDWDDVMDLNIKSLFFMSQAAARHFIAQGDGGKIINIASMLSFQGGIRVPSYTASKSGVMGITRLLANEWAKHRINVNAIAPGYMATDNTQQLRADAQRSAEILDRIPAGRWGKPEDLMGPVVFLASRASDYMNGYTIAVDGGWLAR
>NC_013956.2|WP_013024475.1|667315_668395_-|glycoside-hydrolase-family-88-protein
MELLSTARQLDRLLNGFTQLKDEGKFNEPNMDGTAGDYISFAHWEWPQGVGLFGLVRLWELTRRDDIYQIIENWFQQNIQKGLPPLNINTTAPMLPLSLLWAHNRAPHYQAVLDSWADRVMTELPRTPEQGFQHVVSDGINPMEIWDDTLFMVVLFLGHYGVASGRQALVDEAVRQFLLHARYLNDPQTGLWFHGWSFTEKSHFAQARWARGNAWITVGIIEFLELTQLRGGVRDYLLECLKTQINSLITLQSESGAWHTLLDHPDSYEEISATAGFGYGLLKGVRLGYGDERWLQAGLQALGAVRRNIDSSGTVHNVSYGTRMGRTLQFYKDIPLQPTGYGQALAILCLTEGLRHFKK
>NC_013956.2|WP_013024487.1|682241_683495_-|D-galactonate-dehydratase-family-member-RspA
MSNLFITNVKTILTAPGGIDLVVVKIETNEPGLYGLGCATFTQRIYAVQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVNDKPGLGIDINEALAAKFPCEGGNPTWTMARTPDGTVWRP
>NC_013956.2|WP_013024488.1|683819_684587_+|SDR-family-oxidoreductase
MTAMFDLTGKTALITGSSRGLGFAYAEALAAAGADVILNGTREAVLNEAVEQLKNKGYRVSGRVFDVTCESAIEQVFASLDEQGIAVDIVINNAGIQYRKPMLELELENWQKVIDTNLTSAFLVSRAAAKRMIARNRGGKIINVGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNSALVDDARFDSWVKSSNPSQRWGRPEEVAGTAVFLSSPASDYINGQIIYVDGGWLAVL
>NC_013956.2|WP_041457464.1|684628_685660_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MTHACVAKGKKEIAVEQRELKYSDDDVVVQVECGGICGSDIHYYHEGRAGLSVIKQPLVIGHEFVGRIFQAPTASGLEPGQKVAINPSQPCGQCEYCRAGKQNACATMRFMGSAQFTPHVNGGFAQYVVVPAKQCVAYDEQVPASVMAVAEPTAVVIHALNVAGSIVGKRVLVMGAGPIGALAIAAASASGAAEIVAFDPSERCRRIAVEMGADAAVDASDRAAVARYGENRGYFDVTLEASGAEAAIESSILVTRPGGVVVQIGMGKSPLNFPVAQMLVKEISWKGSFRFIDEFDVAVKWLEKGIIDPRPILSGNYAYHDIEAALKAASDKTQHSKVLVQFS
>NC_013956.2|WP_014595264.1|685802_687200_+|MHS-family-MFS-transporter
MSHLNTNTTERNTSDLVRASVSGWLGTTLEFMDFQLYSLGAALVFHEVFFPEQSGAMALILAMGTYGAGYIARIVGAVFFGKMGDRVGRKKVLFITIALMGVCTTLIGVLPTYQQVGILAPLLLVALRIIQGLGAGAEISGASTMLAEYAPKGKKGIIASLVAMGTNCGTLSATAIWAAMFFFFTNDEVIAWAWRIPFLASFVVMGFAIWLRFNLKESPVFENVAESATVKPHDQPAQSVFQLIKGKAFWIATGLRFGQAGNSGIIQTFLAGYMVQTLLFNKAVPTDAIMVSSVIGFMTIPLIGWLSDRIGRRIPYRILTLGSIILAYPMISLIVDNAQAVSTIMVCLIVIHNIAVLGQAAIEGITMAEMFGSRNRFAQMAISKEIGGLFATGLGPLLAGIFCQLTGTWYPIAIMLIGYSCIGLLASLIMPEVVDRDLTAEADASGGVPDGCHPVAPSIRAGSGE
>NC_013956.2|WP_013024491.1|687299_688010_+|FadR-family-transcriptional-regulator
MSIKSIQKQNVVNEVFEQIKAKLLDGSWSAGTRLPSEAELTHSFNVSRVSIRSAVQRLRDLGIVITRQGSGSYVCEDFSPQMLNHNARPLMHLSREAFNDMMVFRQTVEFKCVELAVEHATEEDIGLLEQALNNMLINKGDYKKYSEADYEFHLAIIRASHNSVFYNVMKSIKDIYYYYLEELNRSLGITLESVEAHIKVFMAIKNRDASSAVQVLNEAMKHNVVAIDMIKKEEGE
>NC_013956.2|WP_148258813.1|687987_688206_-|hypothetical-protein
MANLPLRPHFLQNAGLLRAHDPDQRVTGDKTDQQGNGNKKPVTVNPVFLSLQKGWLFSRSRSAKQPIPPLLF
>NC_013956.2|WP_013024492.1|688285_688954_-|YecA-family-protein
MKEGPLSEKELQWLEDMLEKYGSEASILDVSELDGLLTAVLSGPTTVEPSRWLVAIWGGEKHIPKWSNEREMTRFMELSFQHMNDIADRLSEFPEQFEPLFGVREMEGLEFTVVEEWCYGYMRGVALTDWSALPAELQDSLDAIALHGTEENLEKVDALTPEEMESSIDAIRPAALALHDYWISQPEAIPQVQQPVTAEKQPGRNDPCPCGSGRKYKQCCLH
>NC_013956.2|WP_041457465.1|689427_690570_+|serine-hydrolase
MISALLLAACGTLSQTSAPAGDKLYLTHSDFHDNLDDLVRHYMQRKQVSGISIAIIHHLNPTLFYSAGVTDDVHRYPITPETLFALGSLSKGVTAEVIIELVNEGQLHWSDTLADLLPSDVRLSQDARQITLLQLVTHTSGLPRQDMDLPMFMQFMGYLRSGQNFYGNLDSDDVLEYLADFSAPRQRGAQYSNLGYALLGYILRERCHSDIETLAHQRIFRPLGMNNTSFVPERLSGFSTRALGHAGDQPKLIPRGELTPDWRFQRNMVAAGSLYSNARDLSVYLRAHLTAGSDPARNRAFAEINKGVYQQGAQTQNIAWVTDRLAGRNITYQVGYIGGYSAFIGFDKQAGNAIVVLQNAFNWSNYLGITLLLNLAEKDR
>NC_013956.2|WP_014595268.1|690701_691208_+|RcnB-family-protein
MRRTQIAFISAGLLFGSLSLIPAAQAAGETTDNVPPPPQIQPANPTAQPGDNNAQPGAAAPAQPQAPMSSDSNDGITPTTPSQSAGNPGKPNYDLSTIIIDYKEHKIGDTVPDKYRSKTYTITEWQKRNLPAPQPDTHWAYINANYILITNDTGKIVMGKSGDIFFRG
>NC_013956.2|WP_080561331.1|691351_692062_+|GNAT-family-N-acetyltransferase
MMSQHVNQYGQPVGQSMPDWQPRPLPQREVLQGQVCRLGPFSVASHAEALWQAWSLAEDGRDWTYLSDGPFNDEAAWLTHAATMEASQDPLHFSVIDVETGKAVGTLSLMRVDAQNGVMEVGYVTFSRLLKQTRMATEAHFLLMRYAFEQLGYRRYEWKCDSCNLPSRRAALRLGFRFEGEFRQARVYKGRTRDTSWFSIIDSEWPAVKNGLERWLAEANFTADGRQREKLETLRG

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Crispr_ID: NC_013956_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013956_2

1991693-1991776

Orphan

Consensus_repeat	Method
GCGGCTTTCTTCGCTTTGGCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013956_2

>merge|NC_013956|2|1991693-1991776|CRISPRCasFinder
GCGGCTTTCTTCGCTTTGGCACGCTGGCACATCCTCAGTACTTTCAGCGCTGGCGGCCTGCGCGGCTTTCTTCGCTCTGGCACG

>NC_013956|2|2|1991693-1991776|CRISPRCasFinder
GCGGCTTTCTTCGCTTTGGCACG	CTGGCACATCCTCAGTACTTTCAGCGCTGGCGGCCTGC
GCGGCTTTCTTCGCTCTGGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013956.2\|WP_014593626.1\|1998858_1999875_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_013956.2\|WP_013025657.1\|1988433_1989066_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NC_013956.2\|WP_013025669.1\|1999871_2000858_+\|sugar-ABC-transporter-permease-YjfF	unknown	unknown	gnl\|CDD\|183235
NC_013956.2\|WP_013025663.1\|1994197_1994779_-\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NC_013956.2\|WP_014605927.1\|1982617_1983892_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_013956.2\|WP_013025664.1\|1994902_1995346_-\|DUF2569-domain-containing-protein	unknown	unknown	gnl\|CDD\|371223
NC_013956.2\|WP_014605923.1\|1989062_1989767_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NC_013956.2\|WP_015700385.1\|1981823_1982480_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|235555
NC_013956.2\|WP_014605926.1\|1984837_1985443_-\|glutathione-transferase-GstA	unknown	unknown	gnl\|CDD\|182533
NC_013956.2\|WP_172796946.1\|1989759_1990392_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NC_013956.2\|WP_013025660.1\|1990395_1991454_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NC_013956.2\|WP_019105277.1\|2003049_2003508_-\|hypothetical-protein	unknown	unknown	unknown
NC_013956.2\|WP_013025656.1\|1987679_1988378_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|180452
NC_013956.2\|WP_013025653.1\|1983948_1984809_+\|pyridoxal-kinase-PdxY	unknown	unknown	gnl\|CDD\|235592
NC_013956.2\|WP_014605919.1\|1995452_1995668_-\|transcription-modulator-YdgT	unknown	unknown	gnl\|CDD\|182426
NC_013956.2\|WP_013025667.1\|1997345_1998866_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_013956.2\|WP_013025662.1\|1993619_1994198_-\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NC_013956.2\|WP_013025670.1\|2001384_2002965_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_013956.2\|WP_013025655.1\|1985595_1987080_-\|dipeptide/tripeptide-permease-DtpA	unknown	unknown	gnl\|CDD\|181969
NC_013956.2\|WP_013025666.1\|1996334_1997291_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380532

Protein	Function_ID	Function_description	E-value
NC_013956.2\|WP_014593626.1\|1998858_1999875_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	2.72663e-71
NC_013956.2\|WP_013025657.1\|1988433_1989066_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	1.71323e-148
NC_013956.2\|WP_013025669.1\|1999871_2000858_+\|sugar-ABC-transporter-permease-YjfF	gnl\|CDD\|183235	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional.	5.13233e-173
NC_013956.2\|WP_013025663.1\|1994197_1994779_-\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	3.04296e-112
NC_013956.2\|WP_014605927.1\|1982617_1983892_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_013956.2\|WP_013025664.1\|1994902_1995346_-\|DUF2569-domain-containing-protein	gnl\|CDD\|371223	pfam10754, DUF2569, Protein of unknown function (DUF2569). This family is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homolog thereof.	2.00808e-40
NC_013956.2\|WP_014605923.1\|1989062_1989767_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	3.9632e-127
NC_013956.2\|WP_015700385.1\|1981823_1982480_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|235555	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase.	1.23079e-130
NC_013956.2\|WP_014605926.1\|1984837_1985443_-\|glutathione-transferase-GstA	gnl\|CDD\|182533	PRK10542, PRK10542, glutathionine S-transferase; Provisional.	4.00183e-132
NC_013956.2\|WP_172796946.1\|1989759_1990392_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	3.04501e-139
NC_013956.2\|WP_013025660.1\|1990395_1991454_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NC_013956.2\|WP_013025656.1\|1987679_1988378_+\|CTP-synthase	gnl\|CDD\|180452	PRK06186, PRK06186, hypothetical protein; Validated.	1.13213e-137
NC_013956.2\|WP_013025653.1\|1983948_1984809_+\|pyridoxal-kinase-PdxY	gnl\|CDD\|235592	PRK05756, PRK05756, pyridoxal kinase PdxY.	0
NC_013956.2\|WP_014605919.1\|1995452_1995668_-\|transcription-modulator-YdgT	gnl\|CDD\|182426	PRK10391, PRK10391, transcription modulator YdgT.	4.86714e-47
NC_013956.2\|WP_013025667.1\|1997345_1998866_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_013956.2\|WP_013025662.1\|1993619_1994198_-\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	4.35037e-133
NC_013956.2\|WP_013025670.1\|2001384_2002965_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.55422e-53
NC_013956.2\|WP_013025655.1\|1985595_1987080_-\|dipeptide/tripeptide-permease-DtpA	gnl\|CDD\|181969	PRK09584, tppB, dipeptide/tripeptide permease DtpA.	0
NC_013956.2\|WP_013025666.1\|1996334_1997291_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380532	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.	6.02399e-136

>NC_013956.2|WP_013025660.1|1990395_1991454_-|electron-transport-complex-subunit-RsxD
MAFRIASSPYTHNRRSTGNIMMLVVLAALPGFAAQCYFFGVGTLLQVILASVTALLTEAAILRLRKSPVAANLADNSALLTAILLGISIPSLAPWWLVVIGTVFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWMPPDALQMIKPGMLDSLSMIFTGHTLAGDTMQQLQLGADGVSQATPLDTFKTGLRAGHSAAQLLAQPIYSGVLAGLGWQWVNLGYLVGGLFLLWKNAIRWHIPAAILLSLAFCATLGWLFSPATLNSPVIHLFSGATMLGAFFIATDPVTASTTDRGRLLYGALIGLLIWLIRSFGGYPDGVAFAVLLANICVPLIDYYTQPRVYGHQKD
>NC_013956.2|WP_172796946.1|1989759_1990392_-|electron-transport-complex-subunit-RsxG
MLDTIRKNGVTLALFAAITTGVTAIVNTVTKPTVEHQTQLQQKNLLDQVVPTDMYDNHIQQECYVVTNAALGNTNPHHLYLARKGNQPVAAALETTAPDGYSGAIQMLVGADFNGKVLGVRVIEHHETPGLGDKIELRISDWINSFNGKVVTGPDDKAFAVKKDGGEFDQFTGATITPRAVVNATKRTALLIESLKGKLSSLPECGDANE
>NC_013956.2|WP_014605923.1|1989062_1989767_-|electron-transport-complex-subunit-E
MSEAKNLLVGGLWKNNSALVQLLGLCPLLAVTATATNALGLGLATTLVLTLTNSFISASRRWVPSEIRIPIYVMIIASVVSCVQMLINAYAYGLYQSLGIFIPLIVTNCIVVGRAEAVASKSSIPLAALDGFAIGMGATCAMVVLGSLREIIGSGTLFNGADQLLGPWAKALKIEVIHLDSPMLLAMLPPGAFIGLGMMLAGKYLIDQKMKQRAVRRAEEQALAAPQGNTGKAV
>NC_013956.2|WP_013025657.1|1988433_1989066_-|endonuclease-III
MNQTKRTEILSRLQQANPHPTTELQFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLALGVDGVKEYIKTIGLFNSKAENVIKTCRILLEQHGGVVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTNFAPGKNVEQVEEKLLKVVPKAFKVDCHHWLILHGRYTCVARKPRCGACLIEDLCEYPDKVE
>NC_013956.2|WP_013025656.1|1987679_1988378_+|CTP-synthase
MPLPLRLALVGDYRPEAVAHQAIPLALSRAAAHLAIDIEPEWIPTPELGDLTAIRQSHAVWLVPGSPYKNDEGVFSMLRWVREGGKPFLGSCGGFQYAVIDYARHVLGWHDANHAETSDEGRMVIAPLSCSLVEQRGEVTFEPGSRIATAYDSLSSDEGYHCNFGVNPDFSAALEGNNLRITAWDLNGDVRGIELTDHPFYVATLFQSERAALQDKDSPLVIAWMQAALDQR
>NC_013956.2|WP_013025655.1|1985595_1987080_-|dipeptide/tripeptide-permease-DtpA
MSTANKHTDEAVSLNAFKQPKAFYLIFSIELWERFGYYGLQAIMAVYLVRQLGMSESDSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIVLGVLVLAIGYALVAFSGHNVSIVYVGMATIAVGSGLFKANPSSLLSTCYDKDDPRIDGAFTMFYMSINIGSLFSMMLTPWLAEKYGYNVAFSLSVVGLVITLLNFLFCKRLVKDFGSKPDFAPLQFGKLLMTLVGIVVLVALANWMLHHQSIARVLLGVIAFGIFVIFAKEAFALHGAARRRMIVAFLLMVEAIVFFVLYMQMPTSLNFFAIRNVEHSILGITFAPEQFQALNPFWIMLASPILAAVYNKLGDKLPMPHKFAIGMVLCSAAFLVLPVGAKFASDAGIVSVNWLILSYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAVIAGKVANLMAVPENVTDPLISLATYGRVFQQIGIATAVIAVLMLITAPLLNRMTQDTAADKA
>NC_013956.2|WP_014605926.1|1984837_1985443_-|glutathione-transferase-GstA
MKLFCKAGACSLSPHIVMRECGLDFTQVNVDLQTKLTERGEDFRQINPKGQVPALQLSDGNVLTEGAAIVQYLADLKPDRHLLAPVGSLTRYHTIEWLGYISSELHKSFSPLFRNDAPEEYKALVRRQLEAKFAWVNDELKDKQWLMGVHFSVADAYLFVVTRWAKALNLDLAARDHLQHWFERVAERPSVQAALKAEGLN
>NC_013956.2|WP_013025653.1|1983948_1984809_+|pyridoxal-kinase-PdxY
MKNVLAIQSHVVFGHAGNAAAEFPMRRMGVNVWPLNTVQFSNHTQYGHWTGTVMPATHLTDIVKGIADIDRLKTCDAVLSGYLGSAEQGENILEIVRQVKAANPEAWYFCDPVMGHPEKGCIVAPGVAEFHCKLALPASDIIAPNLLELEMLSERSVTSVETAVDAARMLISQGPKVVLIKHLARAGRRSDRFEMLLVTAGEAWHISRPLVDFGVRQPVGVGDLTSGLLLVDLLHGLSLQAALEHVTAAVYEVMLKTHEMGEYELQLVAAQDAIVRPTHVFPAEKL
>NC_013956.2|WP_014605927.1|1982617_1983892_+|tyrosine--tRNA-ligase
MTSSNLIQQLQERGLIAQVTDEDALVEKLAQGPISLYCGFDPTADSLHLGHLVPLLCLKRFQDAGHKPVALVGGATGLIGDPSFKAAERKLNTSETVGEWVEKIRTQVAPFLDFDCGANSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRDDQGISFTEFSYNLLQGYDFACLNALHGVSLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKSDGTKFGKTEGGAVWLDAKKTSPYKFYQFWINTADADVYRFLKFFTFLSIEEIHALEEEDKNSGTAPRAQYVLAEQVTRLVHGEEGLAAAKRITESLFSGALSDMTEADFEQLAQDGMPTITLSAEDDLQQALVKAELVPSRGQARTMIGSNAVSLNGEKQSDAEYRFSDSDKLFNRFTLLRRGKKHYCLINWQ
>NC_013956.2|WP_015700385.1|1981823_1982480_+|pyridoxamine-5'-phosphate-oxidase
MSDSDMLQTIAHLRREYTRGGLRRKDLPDNPLALFESWLKQACEAQLPDPTAMTVATVDEQGQPYQRIVLLKHYDEQGMVFYTNLGSRKAQQLGHNPRISLHFPWHFLERQVMVLGEVEKLSPLEVLKYFSSRPRDSQIGAWVSRQSSRISARGVLEGKFLELKQKFQQGDVPLPSFWGGYRVKFNTMEFWQGGEHRLHDRFLYQRDNDGWKIDRLAP
>NC_013956.2|WP_013025662.1|1993619_1994198_-|electron-transport-complex-subunit-RsxB
MSAIWIAVAVLSALSLVFGALLGYASRRFEVEEDPIVEQIDAVLPQSQCGQCGYPGCRPYADAVGNNGEAINKCAPGGEQTMLKLAALLNVEPQPIDGDEEAKAPVRTVAWIDEANCIGCTKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIEMRPVATTTANWKWDLETIPVRVIPVESHA
>NC_013956.2|WP_013025663.1|1994197_1994779_-|electron-transport-complex-subunit-RsxA
MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVITLASICAWLVNHLILVPLDLVYLRTMAYILVIAVVVQFTEMVVRKTSPSLYRLLGIFLPLITTNCAVLGVPLLSVNLNHTFLQAALYGFSASLGFSLVMVLFAGMRERLVLANVPAPFKGNSIALITAGLMALAFMGFTGLVKF
>NC_013956.2|WP_013025664.1|1994902_1995346_-|DUF2569-domain-containing-protein
MNTQDAAPRIGGWLLVPLAWLLMTLLTTALVMAMYLTPLFDTQWRATLFNHSSLVTTYWAISLFTATALWAYSMWVVWIFFKRSSRLPRHYIVWLLITVLLALKTFAFTPVSDARAIQTLLLSLAAAAIFVPYFKRSARVKATFTQR
>NC_013956.2|WP_014605919.1|1995452_1995668_-|transcription-modulator-YdgT
MTAHDYLLKFRKVNNLDSLEKLYDHLNYSLSDNTDIINMYRAADHRRAELVSGGRLFDLGCVPKSVWRYVV
>NC_013956.2|WP_013025666.1|1996334_1997291_+|ABC-transporter-substrate-binding-protein
MWKRLLLTTLVSAALSGSVLAAEMTVGFSQVGSESGWRSAETNVAKSEAKKRGINLKIADGQQKQENQIKAVRSFIAQGVDAIFIAPVVQTGWEPVLEEAKDAKIPVYLLDRAIVVKDNSLYQAVVTADNVLEGKLIGDWLVKTVGDKKCNVVELQGTVGASVAIDRKKGFAEAISGHPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMAIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMLAGEANANVELTPNMAGPAFDALEKFKKDGTLPPKIIRTQSKLFLPADAQAELDKKKNMGY
>NC_013956.2|WP_013025667.1|1997345_1998866_+|sugar-ABC-transporter-ATP-binding-protein
MTTHNEQPLLAISGVSKGFPGVKALDDVSFSLRKGEIMALLGENGAGKSTLIKVLTGVYTRDSGTVTLNGQAISPHSTAEAQDIGIGTVYQEVNLLPNMSVADNLYIGREPRRFGMIDRKRMVRDADALMRNYGFALDVTRPLGHYSVAMQQIIAICRAVDLSAQVLILDEPTASLDASEVEMLFTLMTQLKNRGMSLIFVTHFLDQVYRITDRITVLRNGKFIATHDTATLPQIELVKLMIGRELMATALQRQGSTLRSNQPVVSFEDYGKKGTIEPFSLQVRPGEVVGLAGLLGSGRTETAEVLFGIRRADRGTAKIKGKVEHIRTPAQASRLGMGFCPEDRKTDGIIGAASVRENIILALQAHRGWLRPIKKREQQAIAERFIKSLGIRTPHAEQPVELLSGGNQQKVLLSRWLVTKPQFLILDEPTRGIDVGAHAEIIRLIESLCADGLALLVISSELEELVGYADRVLIMRDLKQVAEIPLEQLSVAAIVNAIADGGTQHA
>NC_013956.2|WP_014593626.1|1998858_1999875_+|ABC-transporter-permease
MLESPVTATKPQRRKFRLPPGMPQIIALLLVLLVDSLVANNFFAIHLQDGRLFGSPIDIINRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATAATLTVAGHGVPFIIMVTLASGLACGIWNGILVALLRIQPFVATLILMVAGRGIAQLITQGQIVTFNNDSLGWFGNGALWLLPVPVWITVAVALLVWLLARKTALGLFIEAVGINLRAARNAGVNGWLVVMSTYAISGLCAAVAGLIVAADIRGADANNAGLWLELDAILAVVIGGASLMGGRFNIVLSLIGALIIQSMNTGILLSGFPPELNQVVKAIVVMCVLLLQSPRFIAMFKRRRPS
>NC_013956.2|WP_013025669.1|1999871_2000858_+|sugar-ABC-transporter-permease-YjfF
MIKRHLPLMITLLVFVMGYLFCLSQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGAVIAFSGVFLAKVIGDYHLNPVLAFALILGMGAMFGAMMGWLIDALKIPAFIITLAGMFFLRGCSYLVSENSIPIDHPLYATLSSMAWKVPGGGRLSLLALIMLVVVAGGIILAHRTRFGNQVYAIGGSLTSAQLMGVSTRATTIKIYMLSTTLATLAGIVFSIYTSAGYALAGLGVELDAIASVVIGGTLLSGGVGTVLGTLFGVLIQGLIQTWINFDGTLSSWWTKIAIGILLFAFIALQRLLTVMWDRQRNAPVKRLIQ
>NC_013956.2|WP_013025670.1|2001384_2002965_+|GGDEF-domain-containing-protein
MGMNKTYKPSLKGLLCLHSVCCIVITALMLILVVGVVLKVLTEKRIIESNTAYARKLADMTDSTFRTAQKELAYSATQIKRFDDKQALQQEADRLRLQSDMFSSVVMLTPDGYVAVSSPPGLLPVGTSLNVAPEQLMAVKKGAFVSEPLTPYTGNYLIFLSNPVYSSSGAYLGYIAGSIYLKRKSILSRLMSHHFYTDKTTISIVSDTGEVIYSPDETLTGKNNPLPGSLTTHLNQASSGGLKTTLEQRDCLLGYSDVIKTNWHVFVCVSPDVVTTTLTLIAKDVLVYGLVIALLLVGVSIFVSTQISKPLERLAGLTRSTTTKDLPPKIKDIKTWYKESDRLKKSFLAYSNTINKTLAILRDDAITDHLTKLYNRRGFEQLTAPYLSAKNEHSLASFDIDYFKRINDHYGHDIGDKTLVAVAMFLKKGCRTNDIVCRFGGEEFVVFFPNTQISEAESIANRIREHIACAQFSEIGKMTISAGVESLAHHKNDIEETLLSVDQWLYQAKHEGRNRVVSARSKLISS
>NC_013956.2|WP_019105277.1|2003049_2003508_-|hypothetical-protein
MNKILVLTGLCFIALLLYPFSGNREHRISCKADISYQWQDSTLNLFISQNIQNGKGILALSGTLHEKNKADGYLSKTISFSYREQGYYYHLNSDLVINSPQMTMSVQDQRKWLPDFFIEKGKPLLLKIRPYGDKAWLFYSETTPLFVCERSS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_013956_1	1.4\|679681\|25\|NC_013956\|CRISPRCasFinder	679681-679705	25	NC_013956.2	681292-681316	1	0.96
NC_013956_1	1.10\|679969\|25\|NC_013956\|CRISPRCasFinder	679969-679993	25	NC_013956.2	681292-681316	1	0.96
NC_013956_1	1.16\|680257\|25\|NC_013956\|CRISPRCasFinder	680257-680281	25	NC_013956.2	681292-681316	2	0.92

1. spacer 1.4|679681|25|NC_013956|CRISPRCasFinder matches to position: 681292-681316, mismatch: 1, identity: 0.96

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgccgacagctccctgatc	Protospacer
******** ****************

2. spacer 1.10|679969|25|NC_013956|CRISPRCasFinder matches to position: 681292-681316, mismatch: 1, identity: 0.96

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgccgacagctccctgatc	Protospacer
******** ****************

3. spacer 1.16|680257|25|NC_013956|CRISPRCasFinder matches to position: 681292-681316, mismatch: 2, identity: 0.92

ggcgggtgacgacagctctctgatc	CRISPR spacer
ggcgggtgccgacagctccctgatc	Protospacer
******** *********.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013956_1	1.2\|679585\|25\|NC_013956\|CRISPRCasFinder	679585-679609	25	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	466448-466472	3	0.88
NC_013956_1	1.4\|679681\|25\|NC_013956\|CRISPRCasFinder	679681-679705	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NC_013956_1	1.4\|679681\|25\|NC_013956\|CRISPRCasFinder	679681-679705	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NC_013956_1	1.4\|679681\|25\|NC_013956\|CRISPRCasFinder	679681-679705	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NC_013956_1	1.4\|679681\|25\|NC_013956\|CRISPRCasFinder	679681-679705	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NC_013956_1	1.10\|679969\|25\|NC_013956\|CRISPRCasFinder	679969-679993	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NC_013956_1	1.10\|679969\|25\|NC_013956\|CRISPRCasFinder	679969-679993	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NC_013956_1	1.10\|679969\|25\|NC_013956\|CRISPRCasFinder	679969-679993	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NC_013956_1	1.10\|679969\|25\|NC_013956\|CRISPRCasFinder	679969-679993	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NC_013956_1	1.18\|680353\|25\|NC_013956\|CRISPRCasFinder	680353-680377	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	3	0.88
NC_013956_1	1.23\|680593\|25\|NC_013956\|CRISPRCasFinder	680593-680617	25	NC_015465	Synechococcus phage S-CBS3, complete genome	16068-16092	3	0.88
NC_013956_1	1.5\|679729\|25\|NC_013956\|CRISPRCasFinder	679729-679753	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NC_013956_1	1.6\|679777\|25\|NC_013956\|CRISPRCasFinder	679777-679801	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NC_013956_1	1.6\|679777\|25\|NC_013956\|CRISPRCasFinder	679777-679801	25	MK290737	Pectobacterium phage Arno162, complete genome	39073-39097	4	0.84
NC_013956_1	1.6\|679777\|25\|NC_013956\|CRISPRCasFinder	679777-679801	25	MN270892	Pectobacterium phage Wc4-1, complete genome	70859-70883	4	0.84
NC_013956_1	1.6\|679777\|25\|NC_013956\|CRISPRCasFinder	679777-679801	25	MN270891	Pectobacterium phage Wc4, complete genome	70859-70883	4	0.84
NC_013956_1	1.9\|679921\|25\|NC_013956\|CRISPRCasFinder	679921-679945	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NC_013956_1	1.11\|680017\|25\|NC_013956\|CRISPRCasFinder	680017-680041	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NC_013956_1	1.12\|680065\|25\|NC_013956\|CRISPRCasFinder	680065-680089	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NC_013956_1	1.15\|680209\|25\|NC_013956\|CRISPRCasFinder	680209-680233	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NC_013956_1	1.17\|680305\|25\|NC_013956\|CRISPRCasFinder	680305-680329	25	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1413015-1413039	4	0.84
NC_013956_1	1.22\|680545\|25\|NC_013956\|CRISPRCasFinder	680545-680569	25	NC_047783	Klebsiella phage vB_KpnP_KpV48, complete genome	3937-3961	4	0.84
NC_013956_1	1.24\|680641\|25\|NC_013956\|CRISPRCasFinder	680641-680665	25	NZ_CP028972	Aminobacter sp. MSH1 plasmid pUSP4, complete sequence	38380-38404	4	0.84
NC_013956_1	1.3\|679633\|25\|NC_013956\|CRISPRCasFinder	679633-679657	25	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	163595-163619	5	0.8
NC_013956_1	1.21\|680497\|25\|NC_013956\|CRISPRCasFinder	680497-680521	25	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	540938-540962	5	0.8
NC_013956_1	1.21\|680497\|25\|NC_013956\|CRISPRCasFinder	680497-680521	25	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	380738-380762	5	0.8

1. spacer 1.2|679585|25|NC_013956|CRISPRCasFinder matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 3, identity: 0.88

cgcaggtgaagagagcagccagatg	CRISPR spacer
cgcaggtgaagagagcagccatcag	Protospacer
*********************   *

2. spacer 1.4|679681|25|NC_013956|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggccggtgacgacggctccctgagc	Protospacer
*** *********.********* *

3. spacer 1.4|679681|25|NC_013956|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

4. spacer 1.4|679681|25|NC_013956|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

5. spacer 1.4|679681|25|NC_013956|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

6. spacer 1.10|679969|25|NC_013956|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggccggtgacgacggctccctgagc	Protospacer
*** *********.********* *

7. spacer 1.10|679969|25|NC_013956|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

8. spacer 1.10|679969|25|NC_013956|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

9. spacer 1.10|679969|25|NC_013956|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

ggcgggtgacgacagctccctgatc	CRISPR spacer
ggcgggtgacgagagttccctgaac	Protospacer
************ **.******* *

10. spacer 1.18|680353|25|NC_013956|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

cgcgcagaagggcagcgatcttacg	CRISPR spacer
cgcgctgaagggcagcgatcttcgg	Protospacer
***** ****************  *

11. spacer 1.23|680593|25|NC_013956|CRISPRCasFinder matches to NC_015465 (Synechococcus phage S-CBS3, complete genome) position: , mismatch: 3, identity: 0.88

agccagctacaacagtgtgctaacg	CRISPR spacer
tgccaactacaacagcgtgctaacg	Protospacer
 ****.*********.*********

12. spacer 1.5|679729|25|NC_013956|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgggcgaagacagctcgctgaca	CRISPR spacer
ggcgggtgaagacagctcgccgagg	Protospacer
******.*************.** .

13. spacer 1.6|679777|25|NC_013956|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgatcttacc	CRISPR spacer
cgcgctgaagggcagcgatcttcgg	Protospacer
***** ****************

14. spacer 1.6|679777|25|NC_013956|CRISPRCasFinder matches to MK290737 (Pectobacterium phage Arno162, complete genome) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgatcttacc	CRISPR spacer
ccatcagaagggcagcggtcttacc	Protospacer
*   *************.*******

15. spacer 1.6|679777|25|NC_013956|CRISPRCasFinder matches to MN270892 (Pectobacterium phage Wc4-1, complete genome) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgatcttacc	CRISPR spacer
ccatcagaagggcagcggtcttacc	Protospacer
*   *************.*******

16. spacer 1.6|679777|25|NC_013956|CRISPRCasFinder matches to MN270891 (Pectobacterium phage Wc4, complete genome) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgatcttacc	CRISPR spacer
ccatcagaagggcagcggtcttacc	Protospacer
*   *************.*******

17. spacer 1.9|679921|25|NC_013956|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgaccttacg	CRISPR spacer
cgcgcagaagggcggcgaccataat	Protospacer
*************.****** **

18. spacer 1.11|680017|25|NC_013956|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgggcgaagacagctcgctgaca	CRISPR spacer
ggcgggtgaagacagctcgccgagg	Protospacer
******.*************.** .

19. spacer 1.12|680065|25|NC_013956|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgatcttact	CRISPR spacer
cgcgctgaagggcagcgatcttcgg	Protospacer
***** ****************

20. spacer 1.15|680209|25|NC_013956|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgcgcagaagggcagcgaccttacg	CRISPR spacer
cgcgcagaagggcggcgaccataat	Protospacer
*************.****** **

21. spacer 1.17|680305|25|NC_013956|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgggcgaagacagctcactgaca	CRISPR spacer
ggcgggcgatggcagctcactgagc	Protospacer
********* *.***********

22. spacer 1.22|680545|25|NC_013956|CRISPRCasFinder matches to NC_047783 (Klebsiella phage vB_KpnP_KpV48, complete genome) position: , mismatch: 4, identity: 0.84

agccggggcaaatagttcactgatc	CRISPR spacer
agccggggcaaatagttcaaagaaa	Protospacer
*******************  **

23. spacer 1.24|680641|25|NC_013956|CRISPRCasFinder matches to NZ_CP028972 (Aminobacter sp. MSH1 plasmid pUSP4, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgagagaaggcagtgacctcact	CRISPR spacer
ggcgagagaaggcagtgacacgacc	Protospacer
******************* . **.

24. spacer 1.3|679633|25|NC_013956|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.8

cggcatgaaaggcagcgatctcacc	CRISPR spacer
aattatgaaaggcagcgatctcaac	Protospacer
 . .******************* *

25. spacer 1.21|680497|25|NC_013956|CRISPRCasFinder matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 5, identity: 0.8

cgcgcagaacgaaagcgatctcatc	CRISPR spacer
cgcgcagaccgaaagcgatctatgt	Protospacer
******** ************   .

26. spacer 1.21|680497|25|NC_013956|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.8

cgcgcagaacgaaagcgatctcatc	CRISPR spacer
agcgcagaacgaaagcgatgtcgcg	Protospacer
 ****************** **..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1031467 : 1041554

Streptococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013024783.1\|1031467_1032601_-	porin OmpC	Q1MVN1	Enterobacteria_phage	2.9e-107	55.4
WP_041457496.1\|1032952_1034056_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.5e-60	42.4
WP_013024785.1\|1034065_1035319_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.6e-92	45.6
WP_013024786.1\|1035678_1036398_+	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	5.5e-43	35.4
WP_013024787.1\|1036819_1037098_+	hypothetical protein	NA	NA	NA	NA
WP_013024788.1\|1037294_1037762_+	hypothetical protein	H9C148	Vibrio_phage	1.3e-29	45.3
WP_013024789.1\|1037758_1038106_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.6e-17	45.1
WP_013024790.1\|1038102_1038393_+	hypothetical protein	NA	NA	NA	NA
WP_013024791.1\|1038592_1040341_+	amylovoran biosynthesis protein AsmF	A0A1S6L3G8	Erwinia_phage	1.6e-157	46.9
WP_013024792.1\|1040642_1041554_+	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	3.0e-33	35.8

DBSCAN-SWA_2

1900423 : 1914157

Tupanvirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013025576.1\|1900423_1902352_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.4e-125	36.8
WP_026020952.1\|1902355_1902907_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.9e-15	31.8
WP_004157374.1\|1903007_1903205_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_006118956.1\|1903249_1903606_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_106120997.1\|1903727_1903772_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_013025578.1\|1903920_1904904_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.1
WP_013025579.1\|1904918_1907306_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.6e-09	30.9
WP_006118960.1\|1907310_1907613_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.6e-13	40.0
WP_013025581.1\|1907712_1908702_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-14	27.2
WP_013025582.1\|1908735_1909281_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	1.8e-14	40.7
WP_013025583.1\|1909281_1910031_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
WP_013025584.1\|1910097_1910556_+	C40 family peptidase	A0A217EQL1	Bacillus_phage	5.5e-12	38.4
WP_019105318.1\|1910847_1911582_+	EAL domain-containing protein	NA	NA	NA	NA
WP_022622477.1\|1911672_1913109_+	YdiU family protein	NA	NA	NA	NA
WP_013025587.1\|1913110_1914157_-	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.0e-82	47.9

DBSCAN-SWA_3

3466937 : 3554238

Salmonella_phage(50.94%)

plate,capsid,tail,integrase,lysis,terminase,head,tRNA,portal

attL 3470553:3470570|attR 3556123:3556140

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013026960.1\|3466937_3467717_-\|tRNA	tRNA pseudouridine(65) synthase TruC	NA	NA	NA	NA
WP_013026961.1\|3467716_3468046_-	YqcC family protein	NA	NA	NA	NA
WP_013026962.1\|3468625_3469174_-	SecY-interacting protein	NA	NA	NA	NA
WP_041455829.1\|3469235_3470081_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	2.7e-41	39.6
WP_014605152.1\|3470250_3471615_+	LOG family protein	NA	NA	NA	NA
3470553:3470570	attL	NA	NA	NA	NA
WP_013026965.1\|3471648_3472407_+	flap endonuclease Xni	F8WQ40	Bacillus_phage	2.3e-07	31.8
WP_013026966.1\|3472449_3473550_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
WP_014605150.1\|3473542_3473938_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_014594466.1\|3473988_3474906_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_013026969.1\|3475242_3475464_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_013026970.1\|3475674_3476883_+	cysteine desulfurase CsdA	Q2XUY6	environmental_halophage	2.3e-73	36.3
WP_013026971.1\|3476885_3477335_+	cysteine desulfurase sulfur acceptor subunit CsdE	NA	NA	NA	NA
WP_014594469.1\|3477331_3478132_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	2.8e-19	34.1
WP_019104743.1\|3478181_3479330_-	murein transglycosylase A	NA	NA	NA	NA
WP_041457773.1\|3479943_3481272_+	D-serine ammonia-lyase	NA	NA	NA	NA
WP_013026975.1\|3481402_3482647_-	N-acetylmuramoyl-L-alanine amidase	A0A067ZJB6	Vibrio_phage	7.4e-11	26.2
WP_013026976.1\|3482880_3484209_+	amino-acid N-acetyltransferase	NA	NA	NA	NA
WP_013026977.1\|3484243_3486091_-	exodeoxyribonuclease V subunit alpha	A0A1P8DII4	Virus_Rctr197k	4.3e-23	27.6
WP_013026978.1\|3486087_3489627_-	exodeoxyribonuclease V subunit beta	G3MA40	Bacillus_virus	1.3e-07	20.9
WP_013026979.1\|3489623_3492515_-	pitrilysin	A0A1V0SJA4	Klosneuvirus	3.1e-60	24.3
WP_013026980.1\|3492616_3495994_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_013026981.1\|3496106_3496346_-	hypothetical protein	NA	NA	NA	NA
WP_013026982.1\|3496392_3496797_-	DUF2509 family protein	NA	NA	NA	NA
WP_080561343.1\|3496793_3497321_-	prepilin peptidase-dependent protein	NA	NA	NA	NA
WP_013026984.1\|3497317_3497788_-	prepilin peptidase-dependent protein	NA	NA	NA	NA
WP_014594480.1\|3497980_3498775_-	thymidylate synthase	A6M9A2	Geobacillus_virus	7.3e-121	74.6
WP_024471441.1\|3498771_3499653_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_013026987.1\|3499762_3502009_-	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	9.6e-09	24.6
WP_013026988.1\|3502021_3502549_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_013026989.1\|3503235_3503913_+	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA
WP_014605139.1\|3504013_3504724_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	2.0e-45	45.5
WP_013026992.1\|3505202_3506243_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA
WP_019104749.1\|3506312_3507563_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_013026994.1\|3507663_3508584_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041458023.1\|3508580_3509744_-	MFS transporter	NA	NA	NA	NA
WP_013026996.1\|3510111_3510738_+	hypothetical protein	NA	NA	NA	NA
WP_013026997.1\|3510734_3511229_-	cupin domain-containing protein	NA	NA	NA	NA
WP_013026998.1\|3511360_3512881_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	1.1e-85	38.7
WP_104933680.1\|3512890_3513989_-	peptide chain release factor 2	NA	NA	NA	NA
WP_013027000.1\|3514189_3515929_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.3e-65	30.0
WP_015699601.1\|3515932_3516646_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_013027002.1\|3516668_3517562_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	3.5e-31	30.3
WP_071822009.1\|3517807_3518026_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	5.2e-21	68.7
WP_013027003.1\|3518103_3519204_-	phage late control D family protein	E5G6Q3	Salmonella_phage	3.9e-149	73.8
WP_013027004.1\|3519203_3519686_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.2e-55	70.4
WP_013027005.1\|3519682_3522478_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	7.6e-189	46.4
WP_013027006.1\|3522470_3522593_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_013027007.1\|3522607_3522910_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	7.7e-31	72.0
WP_013027008.1\|3522968_3523484_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	3.4e-79	83.6
WP_013027009.1\|3523496_3524669_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.1e-185	82.8
WP_013027010.1\|3524786_3525389_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-24	35.4
WP_013027011.1\|3525388_3526732_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	5.4e-124	50.8
WP_041457775.1\|3526728_3527340_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.3e-85	74.4
WP_013027013.1\|3527336_3528251_-\|plate	baseplate J/gp47 family protein	A0A1S6KZY6	Salmonella_phage	5.7e-101	63.7
WP_039342076.1\|3528237_3528591_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	1.1e-36	59.8
WP_041457778.1\|3528590_3529169_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-68	69.1
WP_013027016.1\|3529266_3530181_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	2.6e-61	44.1
WP_013027017.1\|3530183_3530630_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.2e-40	58.2
WP_041457779.1\|3530622_3531063_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	4.6e-48	61.6
WP_041457780.1\|3531158_3531590_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	6.9e-33	54.2
WP_013027022.1\|3531586_3532102_-	lysozyme	E5G6N1	Salmonella_phage	4.3e-74	79.3
WP_013027023.1\|3532082_3532295_-	hypothetical protein	E5G6N0	Salmonella_phage	1.7e-16	58.8
WP_013027024.1\|3532298_3532502_-\|tail	tail protein X	E5G6M9	Salmonella_phage	3.1e-28	83.6
WP_013027025.1\|3532501_3532987_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.7e-54	65.2
WP_013027026.1\|3533084_3533729_-	hypothetical protein	E5G6M7	Salmonella_phage	4.7e-86	75.9
WP_041458025.1\|3533732_3534908_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	5.5e-133	67.2
WP_041457781.1\|3534952_3535816_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.1e-82	60.9
WP_013027029.1\|3535960_3537727_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	2.4e-305	84.5
WP_013027030.1\|3537726_3538776_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.1e-161	79.0
WP_013027031.1\|3538813_3539113_-	DUF1493 family protein	NA	NA	NA	NA
WP_041457783.1\|3539106_3539568_-	hypothetical protein	NA	NA	NA	NA
WP_013027033.1\|3540098_3541217_+	ParB N-terminal domain-containing protein	Q858T2	Yersinia_virus	1.5e-127	75.6
WP_041458026.1\|3541206_3542196_+	hypothetical protein	NA	NA	NA	NA
WP_013027035.1\|3542196_3543138_-	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	4.7e-143	74.4
WP_013027037.1\|3543585_3543774_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-18	73.8
WP_041457784.1\|3543857_3546146_-	replication endonuclease	F1BUS0	Erwinia_phage	0.0e+00	77.7
WP_013027039.1\|3546142_3547147_-	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	2.5e-65	42.9
WP_041457786.1\|3547143_3547980_-	DNA adenine methylase	E5G6L8	Salmonella_phage	5.6e-87	58.5
WP_013027041.1\|3547976_3548204_-	TraR/DksA family transcriptional regulator	F1BUS2	Erwinia_phage	3.3e-18	60.3
WP_013027042.1\|3548203_3548431_-	DUF2732 domain-containing protein	A0A218M4I9	Erwinia_phage	1.1e-13	56.0
WP_013027044.1\|3548500_3548884_-	hypothetical protein	F1BUS4	Erwinia_phage	3.6e-41	68.1
WP_013027045.1\|3548885_3549065_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-09	56.5
WP_013027046.1\|3549075_3549585_-	phage regulatory CII family protein	F1BUS6	Erwinia_phage	1.1e-61	71.6
WP_049791867.1\|3549612_3549894_-	hypothetical protein	NA	NA	NA	NA
WP_041457787.1\|3550033_3550597_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	6.9e-33	37.4
WP_013027049.1\|3550599_3551646_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.5e-97	52.4
WP_013027050.1\|3551716_3552235_+	flavodoxin FldB	NA	NA	NA	NA
WP_013027051.1\|3552373_3552787_-	hypothetical protein	NA	NA	NA	NA
WP_041457788.1\|3552761_3553028_-	FAD assembly factor SdhE	NA	NA	NA	NA
WP_013027053.1\|3553026_3554238_+\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
3556123:3556140	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3779459 : 3856995

Erwinia_phage(60.61%)

holin,plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013027257.1\|3779459_3780473_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.0e-106	58.0
WP_001144069.1\|3780751_3780967_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_013027258.1\|3781083_3782829_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	8.1e-72	37.3
WP_013027259.1\|3783267_3785112_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_022623182.1\|3785182_3785698_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_013027262.1\|3787068_3787689_+	hypothetical protein	NA	NA	NA	NA
WP_022623186.1\|3788186_3788552_+	hypothetical protein	R9TR46	Vibrio_phage	2.0e-20	63.4
WP_014604972.1\|3788866_3789088_-	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	8.2e-22	68.1
WP_041457813.1\|3789161_3790319_-	cytochrome c1	A0A0M5M5V5	Salmonella_phage	1.7e-81	43.2
WP_013027266.1\|3790320_3790824_-\|tail	phage tail protein	F1BUT6	Erwinia_phage	9.8e-55	73.8
WP_013027267.1\|3790830_3793077_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	2.4e-68	41.7
WP_013027268.1\|3793069_3793192_-\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	61.5
WP_013027270.1\|3793224_3793521_-\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.0e-28	72.2
WP_013027271.1\|3793575_3794088_-\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	3.3e-82	85.3
WP_014594650.1\|3794100_3795270_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.3e-202	89.7
WP_013027273.1\|3795371_3795605_-	hypothetical protein	NA	NA	NA	NA
WP_013027274.1\|3795962_3796502_-\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	8.1e-31	45.1
WP_013027275.1\|3796498_3798337_-\|tail	phage tail protein	F1BUP1	Erwinia_phage	6.1e-78	81.7
WP_013027276.1\|3798406_3798940_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.2e-79	78.5
WP_013027277.1\|3798932_3799841_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	5.0e-134	82.8
WP_013027278.1\|3799844_3800195_-	GPW/gp25 family protein	F1BUP4	Erwinia_phage	2.1e-48	81.9
WP_013027279.1\|3800191_3800776_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	9.9e-83	79.4
WP_013027281.1\|3800868_3801339_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.2e-48	62.5
WP_015699480.1\|3801425_3801860_-	hypothetical protein	F1BUQ1	Erwinia_phage	2.5e-38	59.0
WP_013027283.1\|3801856_3802366_-	lysozyme	E5G6N1	Salmonella_phage	3.6e-57	66.3
WP_014604962.1\|3802349_3802574_-	hypothetical protein	F1BUQ4	Erwinia_phage	9.8e-31	82.4
WP_014604961.1\|3802579_3802783_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	2.9e-26	80.6
WP_013027286.1\|3803475_3803700_-	hypothetical protein	F1BUR9	Erwinia_phage	2.6e-15	64.6
WP_013027287.1\|3803907_3805971_-	replication endonuclease	F1BUS0	Erwinia_phage	6.9e-264	70.8
WP_013027288.1\|3805967_3806195_-	TraR/DksA C4-type zinc finger protein	F1BUS2	Erwinia_phage	1.7e-14	51.4
WP_014604959.1\|3806194_3806413_-	DUF2732 family protein	F1BUS3	Erwinia_phage	6.0e-09	54.1
WP_014604958.1\|3806479_3806848_-	hypothetical protein	F1BUS4	Erwinia_phage	9.4e-39	58.3
WP_015699474.1\|3807271_3807856_+	phage repressor protein	A0A218M4J1	Erwinia_phage	2.5e-33	42.2
WP_013027293.1\|3808923_3810333_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_013027294.1\|3810353_3810827_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_071822013.1\|3810819_3812367_-	PRD domain-containing protein	NA	NA	NA	NA
WP_013027296.1\|3812537_3814016_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.4e-186	70.3
WP_013027297.1\|3814471_3816016_-	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_049791861.1\|3816196_3816433_-	hypothetical protein	NA	NA	NA	NA
WP_013027299.1\|3817127_3819056_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_015699470.1\|3819370_3819628_+	hypothetical protein	NA	NA	NA	NA
WP_071785155.1\|3819757_3819955_+	hypothetical protein	NA	NA	NA	NA
WP_014604950.1\|3820040_3820316_-	regulatory protein AriR	NA	NA	NA	NA
WP_013027302.1\|3820868_3821108_-	hypothetical protein	NA	NA	NA	NA
WP_013027303.1\|3821377_3821686_-	hypothetical protein	NA	NA	NA	NA
WP_013027304.1\|3822422_3822665_+	hypothetical protein	NA	NA	NA	NA
WP_014604946.1\|3825696_3825936_-	hypothetical protein	NA	NA	NA	NA
WP_015699462.1\|3826358_3827822_-	methyl-accepting chemotaxis sensory transducer	NA	NA	NA	NA
WP_014604945.1\|3828162_3829944_+	GGDEF and EAL domain-containing protein	NA	NA	NA	NA
WP_041457817.1\|3829960_3831538_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-17	35.8
WP_022622436.1\|3831902_3832256_+	anti-adapter protein IraP	NA	NA	NA	NA
WP_013027311.1\|3832354_3833452_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_041457818.1\|3833470_3834895_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.9e-19	31.9
WP_013027313.1\|3835156_3836632_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_013027314.1\|3836628_3837261_-	carbonic anhydrase	NA	NA	NA	NA
WP_013027315.1\|3837833_3838643_-	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_013027316.1\|3838751_3839459_+	polyphenol oxidase family protein	NA	NA	NA	NA
WP_041457819.1\|3839621_3841643_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_014594681.1\|3841643_3842762_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_014604939.1\|3842844_3843348_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_013027320.1\|3843344_3845033_-	chloride channel protein	NA	NA	NA	NA
WP_015699456.1\|3845168_3846149_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013027322.1\|3846409_3847381_+	TerC family protein	A0A291LBC5	Escherichia_phage	4.4e-35	36.4
WP_013027323.1\|3847435_3848926_-	altronate dehydratase	NA	NA	NA	NA
WP_013027324.1\|3848928_3850377_-	tagaturonate reductase	NA	NA	NA	NA
WP_013027326.1\|3852194_3853499_+	MFS transporter	NA	NA	NA	NA
WP_014594687.1\|3853586_3854363_+	transcriptional regulator ExuR	NA	NA	NA	NA
WP_014594688.1\|3854675_3855350_+	DedA family protein	NA	NA	NA	NA
WP_013027329.1\|3855346_3855694_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_013027330.1\|3855881_3856256_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_014604934.1\|3856291_3856597_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_013027332.1\|3856599_3856995_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection