CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017279	Campylobacter jejuni subsp. jejuni IA3902, complete sequence	2 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	0	4	2	0
NC_017284	Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017279_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017279_1

1344610-1344689

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017279_1

>merge|NC_017279|1|1344610-1344689|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NC_017279|1|1|1344610-1344689|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017279.1\|WP_002890766.1\|1349141_1350263_-\|hypothetical-protein	unknown	unknown	unknown
NC_017279.1\|WP_002825806.1\|1347019_1347367_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NC_017279.1\|WP_002855324.1\|1341373_1342576_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_017279.1\|WP_014516845.1\|1351516_1353586_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NC_017279.1\|WP_002855518.1\|1347367_1347787_-\|hypothetical-protein	unknown	unknown	unknown
NC_017279.1\|WP_002779147.1\|1336321_1336546_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NC_017279.1\|WP_002818256.1\|1353582_1354095_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498
NC_017279.1\|WP_002852383.1\|1344991_1346362_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NC_017279.1\|WP_002857989.1\|1333525_1334893_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NC_017279.1\|WP_002780456.1\|1339877_1340702_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NC_017279.1\|WP_002855429.1\|1346483_1347020_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NC_017279.1\|WP_002855470.1\|1343636_1344182_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NC_017279.1\|WP_002865443.1\|1336542_1338384_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NC_017279.1\|WP_002890768.1\|1350335_1351520_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NC_017279.1\|WP_002855528.1\|1340705_1341377_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_017279.1\|WP_002855339.1\|1344209_1344536_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NC_017279.1\|WP_002890764.1\|1347783_1349145_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_017279.1\|WP_002903876.1\|1338380_1339874_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NC_017279.1\|WP_002780453.1\|1342578_1343577_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NC_017279.1\|WP_014516846.1\|1354084_1354846_-\|CTP:phosphoglutamine-cytidylyltransferase	unknown	unknown	gnl\|CDD\|224134

Protein	Function_ID	Function_description	E-value
NC_017279.1\|WP_002825806.1\|1347019_1347367_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NC_017279.1\|WP_002855324.1\|1341373_1342576_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_017279.1\|WP_014516845.1\|1351516_1353586_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_017279.1\|WP_002779147.1\|1336321_1336546_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NC_017279.1\|WP_002818256.1\|1353582_1354095_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.09566e-100
NC_017279.1\|WP_002852383.1\|1344991_1346362_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_017279.1\|WP_002857989.1\|1333525_1334893_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NC_017279.1\|WP_002780456.1\|1339877_1340702_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_017279.1\|WP_002855429.1\|1346483_1347020_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NC_017279.1\|WP_002855470.1\|1343636_1344182_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.16494e-57
NC_017279.1\|WP_002865443.1\|1336542_1338384_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NC_017279.1\|WP_002890768.1\|1350335_1351520_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NC_017279.1\|WP_002855528.1\|1340705_1341377_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NC_017279.1\|WP_002855339.1\|1344209_1344536_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NC_017279.1\|WP_002890764.1\|1347783_1349145_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.49806e-79
NC_017279.1\|WP_002903876.1\|1338380_1339874_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	4.03495e-157
NC_017279.1\|WP_002780453.1\|1342578_1343577_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NC_017279.1\|WP_014516846.1\|1354084_1354846_-\|CTP:phosphoglutamine-cytidylyltransferase	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	2.7497e-74

>NC_017279.1|WP_002855339.1|1344209_1344536_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NC_017279.1|WP_002855470.1|1343636_1344182_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NC_017279.1|WP_002780453.1|1342578_1343577_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NC_017279.1|WP_002855324.1|1341373_1342576_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NC_017279.1|WP_002855528.1|1340705_1341377_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NC_017279.1|WP_002780456.1|1339877_1340702_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NC_017279.1|WP_002903876.1|1338380_1339874_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQNFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKTFGDNITKISSLKAS
>NC_017279.1|WP_002865443.1|1336542_1338384_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NC_017279.1|WP_002779147.1|1336321_1336546_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NC_017279.1|WP_002857989.1|1333525_1334893_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NC_017279.1|WP_002852383.1|1344991_1346362_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NC_017279.1|WP_002855429.1|1346483_1347020_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NC_017279.1|WP_002825806.1|1347019_1347367_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NC_017279.1|WP_002855518.1|1347367_1347787_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK
>NC_017279.1|WP_002890764.1|1347783_1349145_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NC_017279.1|WP_002890766.1|1349141_1350263_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKVDLSKIEKNEQFPFFQISCEGVQTTYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVVAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NC_017279.1|WP_002890768.1|1350335_1351520_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NC_017279.1|WP_014516845.1|1351516_1353586_-|capsular-polysaccharide-biosynthesis-protein
MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASLEFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINVKTGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NC_017279.1|WP_002818256.1|1353582_1354095_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NC_017279.1|WP_014516846.1|1354084_1354846_-|CTP:phosphoglutamine-cytidylyltransferase
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYGMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

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Crispr_ID: NC_017279_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017279_2

1452584-1452817

TypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT

3 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_017279_2

>merge|NC_017279|2|1452584-1452817|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTCCAAAGTTTCATTAGTTGAATTTAACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGGATATTTTGCTCAATCTGATGATGGCACGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTGATTTTAGGATTTGGGATAATAAATATAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017279|2|1|1452584-1452817|PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGATATTTTGCTCAATCTGATGATGGCAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTGATTTTAGGATTTGGGATAATAAATATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017279|2|2|1452584-1452817|CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGATATTTTGCTCAATCTGATGATGGCAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTGATTTTAGGATTTGGGATAATAAATATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NC_017279|2|1|1452584-1452817|CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGATATTTTGCTCAATCTGATGATGGCAC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTGATTTTAGGATTTGGGATAATAAATATA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017279.1\|WP_002781229.1\|1450823_1451270_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NC_017279.1\|WP_002858205.1\|1449058_1450600_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NC_017279.1\|WP_002858151.1\|1451273_1452464_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NC_017279.1\|WP_002851320.1\|1458896_1459886_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NC_017279.1\|WP_002851502.1\|1446769_1447483_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NC_017279.1\|WP_002851264.1\|1443161_1443803_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NC_017279.1\|WP_010891941.1\|1443799_1446604_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153
NC_017279.1\|WP_002851174.1\|1442232_1443165_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NC_017279.1\|WP_002851537.1\|1446603_1446795_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NC_017279.1\|WP_002851155.1\|1462000_1463038_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_017279.1\|WP_002851407.1\|1461272_1462004_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NC_017279.1\|WP_002851173.1\|1460548_1461298_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_017279.1\|WP_002851546.1\|1463102_1463552_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_017279.1\|WP_170876396.1\|1452961_1453375_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_017279.1\|WP_002858431.1\|1447786_1448935_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NC_017279.1\|WP_002858341.1\|1454272_1457227_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_017279.1\|WP_002857949.1\|1450601_1450823_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NC_017279.1\|WP_002851523.1\|1459946_1460552_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_017279.1\|WP_002855462.1\|1463681_1464902_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235168
NC_017279.1\|WP_002797819.1\|1453385_1454276_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
NC_017279.1\|WP_002781229.1\|1450823_1451270_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NC_017279.1\|WP_002858205.1\|1449058_1450600_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.73566e-121
NC_017279.1\|WP_002858151.1\|1451273_1452464_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NC_017279.1\|WP_002851320.1\|1458896_1459886_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_017279.1\|WP_002851502.1\|1446769_1447483_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NC_017279.1\|WP_002851264.1\|1443161_1443803_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NC_017279.1\|WP_010891941.1\|1443799_1446604_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_017279.1\|WP_002851174.1\|1442232_1443165_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NC_017279.1\|WP_002851537.1\|1446603_1446795_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NC_017279.1\|WP_002851155.1\|1462000_1463038_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NC_017279.1\|WP_002851407.1\|1461272_1462004_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NC_017279.1\|WP_002851173.1\|1460548_1461298_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.97072e-93
NC_017279.1\|WP_002851546.1\|1463102_1463552_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NC_017279.1\|WP_170876396.1\|1452961_1453375_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.67561e-55
NC_017279.1\|WP_002858431.1\|1447786_1448935_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NC_017279.1\|WP_002858341.1\|1454272_1457227_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_017279.1\|WP_002857949.1\|1450601_1450823_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
NC_017279.1\|WP_002851523.1\|1459946_1460552_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
NC_017279.1\|WP_002855462.1\|1463681_1464902_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NC_017279.1\|WP_002797819.1\|1453385_1454276_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121

>NC_017279.1|WP_002858151.1|1451273_1452464_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NC_017279.1|WP_002781229.1|1450823_1451270_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NC_017279.1|WP_002857949.1|1450601_1450823_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>NC_017279.1|WP_002858205.1|1449058_1450600_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NC_017279.1|WP_002858431.1|1447786_1448935_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NC_017279.1|WP_002851502.1|1446769_1447483_-|molecular-chaperone-TorD-family-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NC_017279.1|WP_002851537.1|1446603_1446795_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NC_017279.1|WP_010891941.1|1443799_1446604_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NC_017279.1|WP_002851264.1|1443161_1443803_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NC_017279.1|WP_002851174.1|1442232_1443165_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NC_017279.1|WP_170876396.1|1452961_1453375_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NC_017279.1|WP_002797819.1|1453385_1454276_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NC_017279.1|WP_002858341.1|1454272_1457227_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MVRILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NC_017279.1|WP_002851320.1|1458896_1459886_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NC_017279.1|WP_002851523.1|1459946_1460552_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>NC_017279.1|WP_002851173.1|1460548_1461298_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NC_017279.1|WP_002851407.1|1461272_1462004_+|glucosaminidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NC_017279.1|WP_002851155.1|1462000_1463038_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NC_017279.1|WP_002851546.1|1463102_1463552_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NC_017279.1|WP_002855462.1|1463681_1464902_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017279_2	2.1\|1452620\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452620-1452649	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
NC_017279_2	2.2\|1452686\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452686-1452715	30	MN530981	Campylobacter phage DA10, complete genome	9791-9820	1	0.967
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	MN530981	Campylobacter phage DA10, complete genome	30280-30309	1	0.967
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	KX229736	Campylobacter phage PC5, complete genome	24335-24364	2	0.933
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	MH107028	Campylobacter phage CP39, partial genome	12830-12859	2	0.933
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	71600-71629	4	0.867
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NC_019507	Campylobacter phage CP21, complete genome	32173-32202	4	0.867
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	MT932329	Campylobacter phage F379, complete genome	99341-99370	4	0.867
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	HE815464	Campylobacter phage CP21 complete sequence	32173-32202	4	0.867
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	KX879627	Campylobacter phage vB_CjeM_Los1, complete genome	70485-70514	5	0.833
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NC_042112	Campylobacter phage CP81, complete genome	56966-56995	5	0.833
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	KF148616	Campylobacter phage CP8, complete genome	71339-71368	5	0.833
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NC_016562	Campylobacter phage CPX, complete genome	71106-71135	5	0.833
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	JX569801	Campylobacter phage CP30A, complete genome	118322-118351	5	0.833
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP007767	Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence	44443-44472	5	0.833
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NC_027989	Campylobacter phage vB_CcoM-IBB_35 clone Contig1, complete genome	19211-19240	5	0.833
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP030935	Enterococcus gilvus strain CR1 plasmid pCR1C, complete sequence	14854-14883	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	99926-99955	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	594073-594102	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	358097-358126	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	358137-358166	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_CP045303	Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence	115760-115789	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	631050-631079	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	MK408758	Campylobacter phage CP20, complete genome	62368-62397	6	0.8
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	FN667789	Campylobacter phage CPt10, complete genome	62201-62230	6	0.8
NC_017279_2	2.2\|1452686\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452686-1452715	30	NZ_CP046263	Lactobacillus plantarum strain KCCP11226 plasmid pKCCP11226_01, complete sequence	23167-23196	7	0.767
NC_017279_2	2.1\|1452620\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452620-1452649	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
NC_017279_2	2.1\|1452620\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452620-1452649	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
NC_017279_2	2.3\|1452752\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452752-1452781	30	HM144385	Brochothrix phage NF5, complete genome	9643-9672	8	0.733
NC_017279_2	2.2\|1452686\|30\|NC_017279\|PILER-CR,CRISPRCasFinder,CRT	1452686-1452715	30	NZ_CP032755	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed4, complete sequence	23940-23969	9	0.7
NC_017279_1	1.1\|1344633\|34\|NC_017279\|CRISPRCasFinder	1344633-1344666	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1452620|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaact	CRISPR spacer
tttccaaagtttcattagttgaatttaact	Protospacer
******************************

2. spacer 2.2|1452686|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

aggatattttgctcaatctgatgatggcac	CRISPR spacer
aggatattttgctcaagctgatgatggcac	Protospacer
**************** *************

3. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.967

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataataaacata	Protospacer
**************************.***

4. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 2, identity: 0.933

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatacaaata	Protospacer
************************ * ***

5. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to MH107028 (Campylobacter phage CP39, partial genome) position: , mismatch: 2, identity: 0.933

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatacaaata	Protospacer
************************ * ***

6. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.867

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatattgaaa	Protospacer
************************   * *

7. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NC_019507 (Campylobacter phage CP21, complete genome) position: , mismatch: 4, identity: 0.867

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatattgaaa	Protospacer
************************   * *

8. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 4, identity: 0.867

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatattgaaa	Protospacer
************************   * *

9. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to HE815464 (Campylobacter phage CP21 complete sequence) position: , mismatch: 4, identity: 0.867

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatattgaaa	Protospacer
************************   * *

10. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to KX879627 (Campylobacter phage vB_CjeM_Los1, complete genome) position: , mismatch: 5, identity: 0.833

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatgttgaaa	Protospacer
***********************.   * *

11. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NC_042112 (Campylobacter phage CP81, complete genome) position: , mismatch: 5, identity: 0.833

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatgttgaaa	Protospacer
***********************.   * *

12. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to KF148616 (Campylobacter phage CP8, complete genome) position: , mismatch: 5, identity: 0.833

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatgttgaaa	Protospacer
***********************.   * *

13. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NC_016562 (Campylobacter phage CPX, complete genome) position: , mismatch: 5, identity: 0.833

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatgttgaaa	Protospacer
***********************.   * *

14. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to JX569801 (Campylobacter phage CP30A, complete genome) position: , mismatch: 5, identity: 0.833

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataatgttgaaa	Protospacer
***********************.   * *

15. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007767 (Campylobacter peloridis LMG 23910 plasmid pPEL1, complete sequence) position: , mismatch: 5, identity: 0.833

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttaggatttgggataaagatgaaa	Protospacer
********************** .*  * *

16. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NC_027989 (Campylobacter phage vB_CcoM-IBB_35 clone Contig1, complete genome) position: , mismatch: 5, identity: 0.833

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttagaatttgggataatattgaaa	Protospacer
**********.*************   * *

17. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030935 (Enterococcus gilvus strain CR1 plasmid pCR1C, complete sequence) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
atcaatggaggatatgggataataaatata	Protospacer
 * * *  ***** ****************

18. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
tggccattaggatttgggatattaattata	Protospacer
* * . *************** *** ****

19. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
tggccattaggatttgggatattaattata	Protospacer
* * . *************** *** ****

20. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
tggccattaggatttgggatattaattata	Protospacer
* * . *************** *** ****

21. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
tggccattaggatttgggatattaattata	Protospacer
* * . *************** *** ****

22. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
tagtttttagaatttgggataataaagctt	Protospacer
* * ******.***************  *

23. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
tggccattaggatttgggatattaattata	Protospacer
* * . *************** *** ****

24. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to MK408758 (Campylobacter phage CP20, complete genome) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttagaatttgggataagcatcaca	Protospacer
**********.***********  * .*.*

25. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to FN667789 (Campylobacter phage CPt10, complete genome) position: , mismatch: 6, identity: 0.8

ttgattttaggatttgggataataaatata	CRISPR spacer
ttgattttagaatttgggataagcatcaca	Protospacer
**********.***********  * .*.*

26. spacer 2.2|1452686|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046263 (Lactobacillus plantarum strain KCCP11226 plasmid pKCCP11226_01, complete sequence) position: , mismatch: 7, identity: 0.767

aggatattttgctcaatctgatgatggcac	CRISPR spacer
aggatattttgatcaatctgataaaatgat	Protospacer
*********** **********.* .  *.

27. spacer 2.1|1452620|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

28. spacer 2.1|1452620|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

29. spacer 2.3|1452752|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 8, identity: 0.733

ttgattttaggatttgggataataaatata	CRISPR spacer
gcctttttagcattagggataataaatact	Protospacer
 .  ****** *** *************.

30. spacer 2.2|1452686|30|NC_017279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032755 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

aggatattttgctcaatctgatgatggcac	CRISPR spacer
tggatattttgatcaatctgataaattagt	Protospacer
 ********** **********.*    ..

31. spacer 1.1|1344633|34|NC_017279|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

193692 : 202248

Streptococcus_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014516681.1\|193692_194874_-	AAA family ATPase	A0A127AWE7	Bacillus_phage	6.5e-49	34.0
WP_002915802.1\|194873_196001_-	hypothetical protein	NA	NA	NA	NA
WP_002915799.1\|196135_196483_-	hypothetical protein	NA	NA	NA	NA
WP_002782963.1\|197070_197709_+\|transposase	IS607-like element ISChh1 family transposase	A0A1S5RGS9	Helicobacter_phage	1.6e-97	86.8
WP_002915795.1\|197695_198988_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RFS3	Helicobacter_phage	7.2e-142	62.9
WP_002779755.1\|199362_199536_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	4.6e-28	100.0
WP_002915791.1\|199587_201507_-	tetracycline resistance ribosomal protection protein Tet(O)	A0A1B0RXH7	Streptococcus_phage	0.0e+00	98.4
WP_001129922.1\|201873_202248_-	TnpV protein	D0R0F4	Streptococcus_phage	6.6e-64	96.8

DBSCAN-SWA_2

1361319 : 1369783

Synechococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002903944.1\|1361319_1362042_-	glycosyltransferase family 2 protein	E3SJ89	Synechococcus_phage	2.9e-15	26.7
WP_002903942.1\|1362038_1363562_-	hypothetical protein	B2ZYD9	Ralstonia_phage	5.3e-35	27.5
WP_014516848.1\|1363558_1363957_-	capsule biosynthesis phosphatase	A0A2K9L0P7	Tupanvirus	1.7e-09	41.0
WP_014516849.1\|1363996_1365916_-	hypothetical protein	E3SJ94	Synechococcus_phage	2.9e-06	27.8
WP_025006610.1\|1365909_1367049_-	methyltransferase domain-containing protein	M4QRS6	Synechococcus_phage	1.8e-56	40.2
WP_002903930.1\|1367765_1368095_-	hypothetical protein	NA	NA	NA	NA
WP_014516850.1\|1368097_1368433_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_002903928.1\|1368425_1369151_-	glycosyltransferase family 2 protein	A0A1D8KNV9	Synechococcus_phage	9.2e-30	33.6
WP_002826458.1\|1369144_1369783_-	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	2.2e-35	43.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017279

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection