CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_014121	Enterobacter cloacae subsp. cloacae ATCC 13047, complete sequence	4 crisprs	csa3,DEDDh,WYL,DinG,cas3	4	12
NC_014108	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_B, complete sequence	0 crisprs	NA	0	0
NC_014107	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	1 crisprs	csa3	1	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014121_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014121_1

422993-423158

Orphan

Consensus_repeat	Method
GAGTCCGGAATCCGGACTCAGTC	CRT

3 spacers

The CRISPR arrays of NC_014121_1

>merge|NC_014121|1|422993-423158|CRT
GAGTCCGGAATCCGGACTCAGTCAAAAAAGCACCAAAAACATCCCGGAATCACTGAGTCCGGAAAACGGACTCAGTACCCCGTCAGTGGATAAAACACAGAGTCCGGAATCAGGACTCAGTCTGAAATCAACGAGTTACACCGGAGTCCGGAATCCGGACTGTAAC

>NC_014121|1|1|422993-423158|CRT
GAGTCCGGAATCCGGACTCAGTC	AAAAAAGCACCAAAAACATCCCGGAATCACT
GAGTCCGGAAAACGGACTCAGTA	CCCCGTCAGTGGATAAAACACA
GAGTCCGGAATCAGGACTCAGTC	TGAAATCAACGAGTTACACCG
GAGTCCGGAATCCGGACTGTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014121.1\|WP_023293471.1\|415008_415596_-\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_007372572.1\|418663_420370_+\|ParB-family-protein	unknown	unknown	gnl\|CDD\|213858
NC_014121.1\|WP_013095145.1\|416425_417310_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_014121.1\|WP_176682058.1\|432854_434135_+\|type-4b-pilus-protein-PilO2	unknown	unknown	gnl\|CDD\|369114
NC_014121.1\|WP_013095144.1\|413465_414662_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_014121.1\|WP_044158999.1\|417302_418667_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NC_014121.1\|WP_007372584.1\|428437_428722_+\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|226860
NC_014121.1\|WP_007372582.1\|427214_427706_+\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NC_014121.1\|WP_144340281.1\|412295_413416_-\|IS3-like-element-ISSen4-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_014121.1\|WP_007372575.1\|421437_422037_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NC_014121.1\|WP_013095151.1\|423830_424553_+\|TIGR03761-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274771
NC_014121.1\|WP_007372573.1\|420362_420620_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|222775
NC_014121.1\|WP_013095147.1\|420609_421353_+\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NC_014121.1\|WP_007372583.1\|427781_428282_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NC_014121.1\|WP_044159004.1\|428712_429195_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_014121.1\|WP_013095156.1\|429427_430714_+\|TcpQ-domain-containing-protein	unknown	unknown	gnl\|CDD\|163460
NC_014121.1\|WP_013095157.1\|431178_432852_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NC_014121.1\|WP_007372587.1\|430715_431159_+\|type-IV-pilus-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|369356
NC_014121.1\|WP_013095148.1\|422036_422267_+\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_013095159.1\|434121_434619_+\|type-IV-pilus-biogenesis-protein-PilP	unknown	unknown	gnl\|CDD\|274394

Protein	Function_ID	Function_description	E-value
NC_014121.1\|WP_007372583.1\|427781_428282_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	5.62478e-91
NC_014121.1\|WP_013095145.1\|416425_417310_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.15896e-22
NC_014121.1\|WP_176682058.1\|432854_434135_+\|type-4b-pilus-protein-PilO2	gnl\|CDD\|369114	pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body. This family does not seem to be related to pfam04350.	6.29457e-55
NC_014121.1\|WP_013095144.1\|413465_414662_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.58761e-34
NC_014121.1\|WP_044158999.1\|417302_418667_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_014121.1\|WP_007372584.1\|428437_428722_+\|DUF1778-domain-containing-protein	gnl\|CDD\|226860	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown].	5.96838e-20
NC_014121.1\|WP_007372582.1\|427214_427706_+\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.92784e-61
NC_014121.1\|WP_144340281.1\|412295_413416_-\|IS3-like-element-ISSen4-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.20101e-34
NC_014121.1\|WP_007372575.1\|421437_422037_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	3.09237e-67
NC_014121.1\|WP_013095151.1\|423830_424553_+\|TIGR03761-family-integrating-conjugative-element-protein	gnl\|CDD\|274771	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.	2.75731e-90
NC_014121.1\|WP_007372573.1\|420362_420620_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	6.17926e-12
NC_014121.1\|WP_013095147.1\|420609_421353_+\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	3.66896e-10
NC_014121.1\|WP_007372587.1\|430715_431159_+\|type-IV-pilus-biogenesis-protein-PilM	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	1.81612e-24
NC_014121.1\|WP_044159004.1\|428712_429195_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00414362
NC_014121.1\|WP_013095156.1\|429427_430714_+\|TcpQ-domain-containing-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	7.38231e-55
NC_014121.1\|WP_013095157.1\|431178_432852_+\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	1.02385e-122
NC_014121.1\|WP_007372572.1\|418663_420370_+\|ParB-family-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	2.01578e-142
NC_014121.1\|WP_013095159.1\|434121_434619_+\|type-IV-pilus-biogenesis-protein-PilP	gnl\|CDD\|274394	TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP. [Cell envelope, Surface structures].	1.0219e-18

>NC_014121.1|WP_013095148.1|422036_422267_+|hypothetical-protein
MEMGDFSPRQQVSPAVRRRAQQLFRAACGGQKVFRRLTMNGYLKIDVGPFWRILSKDGCRQWWLMDHETYNREIRR
>NC_014121.1|WP_007372575.1|421437_422037_+|DUF2857-domain-containing-protein
MSQHNLSQATTAILSSLLMDVKNGNIRRCESLGMSVEEIRALSHLSLDELHYLSQSHVSVLDVTLNHENFWLMLNQARNEQKRFMMIDRALELGGSMELIDRYFGLSPSEVSARRRLMGIESRQGRTQALTEPQDAALWAEWKAAGLSSPDSHQALEAMMLAAEQLGLSLTAVWSRVCQWCREANAAGRRAEIPVRKEA
>NC_014121.1|WP_013095147.1|420609_421353_+|DUF2786-domain-containing-protein
MSDNAKITARIRRLMALGTRNSNPHEAARAVALAQRLMQRHGLTPDMLSLSDVSESVCFSLTSDAEKVPAWLSSLATVVCMATGCRCWFGWHVHVSPQGVSSVRRSLHFYGFSERPEVALYIYTVLQRQLRAATDAHMSGYRTRRILLRTRRRRADQFREGWVSGVWQVLQSFAPSGEENAVLQRWLVRRHAGEPLEDMAVRSAGKCRGDRTARVAGFFAGRDIDLHHGLSGAQASRQITAGGHAHD
>NC_014121.1|WP_007372573.1|420362_420620_+|TraR/DksA-C4-type-zinc-finger-protein
MSDDLNDEMAQASTALFIQHGIDAIRAKVNSATPSKAFCECCGAAIPVARQLAVPGVELCAGCQEVKEMKNRHRADGGRGMRHVG
>NC_014121.1|WP_007372572.1|418663_420370_+|ParB-family-protein
MSNVRNLNLGAAMLQRGKTPAQGDAVPAAVPLPVSEMAMVLTLDQLRPNPDNPRKSRNPHFDEIKASIRACGLVQVPKVTRDPDGEDVYIFSDGGNTRYQILCELWQETGDERFYRVHTIFKPWPGRLKCLVGHLAENEVRGDLSYIDKAFGVHSARAIQEELMGRPVTLRELSDLLNLEGYPIDYSTISRMEDTIKYLWPCIPNLLNSGLARLQVLSLLRIRSQAGKVWSQFAHESSPQCSFDQVFEASCQGFDDPDSYAYETFRDEFIGQLVKALPHPSLNYDRWMIELDPREQKRREQFGEPPPLPVLTPPQEKAAGREPPEPQVTVLPPDTASETPVTGLRSGTLTTPGRPEPAPELPADAELPVNALMTAGSEPRREVQNDLFGGRPVISGETADPDSISLPDFSPDTLMSAFGEENASPAASVSSVAFAATGLEPVSDIWHIPALQDDIEHLQDMAYRLVFEIAEAMGCADNVREDKNPQSAGFAVSETGSEFVLFLAGLSGSLPNRQFNMFMFCLNFFGSQSPADMAVFDDITVVKTMRLIRVIRRLRELQRLAAKGGENV
>NC_014121.1|WP_044158999.1|417302_418667_+|replicative-DNA-helicase
MSDDRRNIPGIYSPDAEQSVIGGLMLDNDRWDEVALRLSADDFFQKVHKVIYQEMTRLVAAGKPLDLITLSESIESRGKDALEQLGGFAYLAELSKNTPSAANIVAYCDIVARTSRARQLASIGAEITESVRTPGTDIDRVMETAEQKITRLAERAEPEQGVTLLEGMERLLPELERRCNVPDGITGTPTGFEELDAMTSGLQAGDLVLIAARPSMGKTALLISLLLNSLMKKSGSKGQLYSMEQPTEQILMRMLASLGSIDLTHLKSGLMDDEDWARATDASALLMGDLNDSLIIDDTGSLTPAMLRIRARRNARRYGHPSIIGLDYLQLMRCPDQENRTQEIAEISRSLKALAKEMMCPVVALSQLNRQLESRADKRPNNGDLRDSGALEQDADVIVFIYRDEVYHENTEDKGIAEIIISKQRQGPTGTIRLQYEGRFTRFSDVAGRPGRSA
>NC_014121.1|WP_013095145.1|416425_417310_+|ParA-family-protein
MHSKTKVVPVVSTKGGEGKSTQAANLGGFLADAGIKTLIIDGDHAQPTASSIYPLAYEAPCGLYELLMQTVDLSKAENIISRTTIDNLDVIVSNDPRNLLPTYMLNVPDGRVRLRNALSNQVFSQYDVILIDSQGSRSVMSELIILAATGEMIGMVKPVLPDVREFMRGTVALMEELIPYMAFGISLPRIHMLVNCMDYTLLAKTTVEQAENIIVSGDYSQHADKIVIDMLQTRIYDLDVYKQGHAAGQPVHRLEKKTSRKSDSAFDSMHGLACELFPEWVSLFDTLAKGGERV
>NC_014121.1|WP_023293471.1|415008_415596_-|hypothetical-protein
MDTHTPYNCNDIARLALAMHGHSYFFSLRRHLNINFSRDLNGSGTQGLFIKKQNVDIDLIKVIFDYTDNKNDDFLYEADLIKDQRKDYEPTVNRGKHRFVAKQIELNIDWNGNEIQQWRADIERLTRSHDNLEDWLKNGSEMLVCCASGFFCRLPTILTLNDLKQYVAMGVTLEDLKTRLKCSKCGKRGSKVTVF
>NC_014121.1|WP_013095144.1|413465_414662_-|site-specific-integrase
MSSPKRFRFTNQLIKSLPPNTSDARSTDAEYSDTEISGLKCLVSRREGRKKFLLRYLYHGRKRAIAIGHWPEVDVNLARQIAIEHKRSLATGTDPKQERENKRMELTFDELFNQHYLPWAKSAKRSWGKDVQRYRDHIRPAIGQRLLSDITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLRENNARQRYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPETKNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVRRAGIFDKEVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQRLQNTSQLLAERITAQLPDLLPVD
>NC_014121.1|WP_144340281.1|412295_413416_-|IS3-like-element-ISSen4-family-transposase
MKKRFSDEQIISILREAEAGVPARELCRKHAISDATFYTWRKKYGSMEVPEVKRLKSLEEENARLKKLLAEAMLDKEALQVALGRKLLTTDQKREAVMLMCDATGLSQRRACRLTGLSLSTCRYEAHRPAADAHLSGRITELALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALSTGRRIKCLTCVDDFTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDIVHARKIINDWRQDYNECRPHSTLNYQTPSEFAAGWRKGHSENEDSDVTN
>NC_014121.1|WP_013095151.1|423830_424553_+|TIGR03761-family-integrating-conjugative-element-protein
MADKQVTKTGSLQSEMTIALHTNYAIGLWLGRKREKQEDNTPVKHGIIGMPQFFVRATLINQDSLNNNPWADEAMYRLEEKLRSATETMTGLIKQLDEEMSMLPAGITLTEVTSVEPLDIHVFTRTPLGYRCVFLLVGFDQFAKKVLQASHYGLITRNGRDNYLSEGGRLLRQIYGTVLSYRRVDATRLDAAENNEVWQKACQEAGEPDRAVLLGEKRSAFSPPVNEASVNLLRLRYQTV
>NC_014121.1|WP_007372582.1|427214_427706_+|DUF3577-domain-containing-protein
MTATTTTPASTGSASASQKKEFFNLNVNGIGYLSSIRRVQGGNGEFTCAVINALTGPTDNASYTRFDVTIAGAETTKLINRCQKAVDEEEKVLIGFVLSGLKADVFTLQTGDHAGESRPSLKARLIKVEFIKKGQDVVYQAPNASQTPESGSSAQKEYDPNSF
>NC_014121.1|WP_007372583.1|427781_428282_+|single-stranded-DNA-binding-protein
MSARGVNKVILVGHLGQDPEVRYMPDSTAVTTLSVATSETWRDKQTGENRENTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDTNGIERWTTEVRVGVNGTMQMLGGGRNNSTNTSGNNAQSGQQGGWGQPQQPQQTPSAPQNPQNEPPMDFDDDIPF
>NC_014121.1|WP_007372584.1|428437_428722_+|DUF1778-domain-containing-protein
MQTPVRKSVRDKQINIRATDEERAVIDYAASLVNKNRTDFIIERAVHEAQNIILDQRVFVLDDARYQAFIRQLEAPVQNVEGRQRLMDVKPEWK
>NC_014121.1|WP_044159004.1|428712_429195_+|GNAT-family-N-acetyltransferase
MEINVTAPALLTEEHVLHSFDCGNAVLDDWLRRRALKNQHLNASRTFVICPEGTACVVGYYSLATGSVSHVDLSRSLRQNMPDPVPVVLLGRLAVDVSTQGNNFGKWLLNDAVMRVSNLADQVGIKAIMVHAIDERAKAFYEYFGFVQSPVAANTLFYKI
>NC_014121.1|WP_013095156.1|429427_430714_+|TcpQ-domain-containing-protein
MAVPSRRVATGAALLACSVIQAGCSSAVSDPAPFANGRYQQPTRFDDIYRNRAPDVVRYDRYTLVSTRPDDAQRDPLNQIVDITMPAQLVKTVGEGFRYLLLESGYSLCSATTSAFSELLSRPLPAVQRDIGPVRLSEALQIVAGPAWRLKVDDVNREICFELRDQYRSFAAPLPAPVSLVSQHAPVSLPPVIQPARTGGAAGTVNAVPRNPFTGDTSINSTPGTLQKPVLTAQNQSVPSPVLTVAKTPAAQKSAALSPAGRPPVPPPAAAPKAASSQKTPVTAVHPVTVQPATVNAARQTVPVRPVTSLPPAPPVSGQTASSYIPGAPVTPQPVGQTWRAEPGSTLKETLTGWASKATCSNGGNWVVIWPVSLDYRIDAPLVFHGNFESVLVQVFDLYRKAEKPLFAEANRIQCLISVSDTPTGGGH
>NC_014121.1|WP_007372587.1|430715_431159_+|type-IV-pilus-biogenesis-protein-PilM
MGYALPVFVFCLVIALMAGDAQRHSAEHVRLSLQQTLPDQLATDMLRTADAVNNWRHGRTVADGTVTPAQAGIVPAPDSRIQTVIQGGRLWVWVPATDGVYAALRTQSVTSALALTVSGGRLRMADGTDMNLSLPSGVTEGSIVYLN
>NC_014121.1|WP_013095157.1|431178_432852_+|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MPRLPFCLTALVAALALSSCSLNEISKMDKEASGQADTAQRVLQSRQTLTQPTVVWSDKPWVNLQPVTPVISTPDEKNLPACQITINRPEGISLPELGQRITALCGIRVSITPDAFAALSSISTGSVVTSQMNGQLPAPDDNGRVPLSQMGTTSAQPVSVQSSPSLIRGLKYQGDIRGLLDMAASGLGLSWRIDSSGVYFYQQDTRTFQLVILNTKVNSSASINSGSGNQLGSGGGTSGGTTGDISSNQKTDYGMNSDLYDDIKKTVEQMVTPKSGRFWLSSATGTLSVTDTPDVLNRIGRYIEYQNKVLSRQVQLNIQIVSVNQTRNEQMGLDWGLVYKSLQNVGASLTGSMANASSSAASAGISILDTASGNAAKFSGSSLLIHALSEQGNVSMALNQTDPTANLTPVAYQLSKSTGMLTSSSSTATANVGVTSTMTTTNVTTGLFMTMLPFIQENGDVQLQFAFSYTSPPDIKSFVSRDGNTRNDTADTSTEGLARKVNLRSGQTLVLTGSEQQNVSADKQGTFTPGNFILGGGQTGSRGRTTLVIMITPVLLR
>NC_014121.1|WP_176682058.1|432854_434135_+|type-4b-pilus-protein-PilO2
MSSQKKTARRTGIRLTHHRRDWMAGLHWAPQHSVLSVRLRGRASPDTHCVTAGRGSASMAGVVSPGRVRHRLYALAVAFQLSEGGNAWGIYRLSRDEDLWVFFAASGGQLSVMGDVTGTRAFIESAAQNFLRFNDADAPGLRCAATAEDGRDATTLTDRLSGAQLRRCRLRKRLAPMSLILPAVVLTLATAAGVYWHDTVQQQADRDKAMEASRSRVAPKNDKPALPARAPHPWASQPPVSVLLSNCWLTREPVFASVAGWRFTDGECVPEGLRLRFVATPGSTVEDFSRRARELLGHAAVFNLQEGGKNGDVFIPFRKYLAGEYTDEALPGAEAQLMRFISHLQRRNLDVKFTEVKPPAVAPGQEKNTPVQDWREFTFSVSSRLQPERLLQDFDAAGLRLTSVSITMSPQGQFGYTMKGSIYAQN
>NC_014121.1|WP_013095159.1|434121_434619_+|type-IV-pilus-biogenesis-protein-PilP
MRRINPARTGLLLSVLLSGPALSATTADALPPNVTLGELEATQARNLILEQKVQTARLEQQLRESQSGQSTDRNYLATSLQPSAPLMTQPVPSQTAATSGTEKRAGSVRLQEIYGRGTQLRARIVLPDGGVTEVAKGDQIPGTAKRVTEVTSTLVRLSDNSELSF

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Crispr_ID: NC_014121_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014121_2

835526-835657

Orphan

Consensus_repeat	Method
TGTTGCCGCCATCGTCGGTATTGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_014121_2

>merge|NC_014121|2|835526-835657|CRISPRCasFinder
TGCCGCCGCCGTTATCGGTATTATTACCACCGTCGCCGTTATCATTGCCGCCGCTGTTGCCGCCATCGTCGGTATTGCTGCCATTGTCATTGTTACCGCCATTATCAGTGTTACCGCCATCGTCGGTATTGC

>NC_014121|2|1|835526-835657|CRISPRCasFinder
TGCCGCCGCCGTTATCGGTATTAT	TACCACCGTCGCCGTTATCATTGCCGCCGC
TGTTGCCGCCATCGTCGGTATTGC	TGCCATTGTCATTGTTACCGCCATTATCAG
TGTTACCGCCATCGTCGGTATTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014121.1\|WP_008502023.1\|840371_840851_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NC_014121.1\|WP_013095533.1\|834297_834531_+\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NC_014121.1\|WP_013095528.1\|826883_827333_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|237908
NC_014121.1\|WP_013095543.1\|845268_847620_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NC_014121.1\|WP_003856458.1\|821886_822150_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NC_014121.1\|WP_013095541.1\|842942_843929_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NC_014121.1\|WP_013095544.1\|847859_848678_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NC_014121.1\|WP_013095537.1\|838391_840257_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NC_014121.1\|WP_013095542.1\|843928_845215_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NC_014121.1\|WP_013095530.1\|828490_829312_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NC_014121.1\|WP_013095532.1\|830933_834158_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_014121.1\|WP_013095540.1\|842124_842946_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NC_014121.1\|WP_023620045.1\|829766_830915_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_014121.1\|WP_013095539.1\|841743_842121_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NC_014121.1\|WP_013095538.1\|840890_841739_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NC_014121.1\|WP_013095527.1\|826265_826766_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
NC_014121.1\|WP_013095529.1\|827334_828285_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NC_014121.1\|WP_013095526.1\|823449_826266_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NC_014121.1\|WP_020688470.1\|822477_823404_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_014121.1\|WP_013095536.1\|837868_838399_+\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852

Protein	Function_ID	Function_description	E-value
NC_014121.1\|WP_008502023.1\|840371_840851_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.13223e-126
NC_014121.1\|WP_013095533.1\|834297_834531_+\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	6.95711e-30
NC_014121.1\|WP_013095528.1\|826883_827333_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|237908	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	1.82359e-107
NC_014121.1\|WP_013095543.1\|845268_847620_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NC_014121.1\|WP_003856458.1\|821886_822150_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.02681e-26
NC_014121.1\|WP_013095541.1\|842942_843929_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NC_014121.1\|WP_013095544.1\|847859_848678_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	3.34124e-172
NC_014121.1\|WP_013095537.1\|838391_840257_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NC_014121.1\|WP_013095542.1\|843928_845215_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NC_014121.1\|WP_013095530.1\|828490_829312_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01161e-140
NC_014121.1\|WP_013095532.1\|830933_834158_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_014121.1\|WP_013095540.1\|842124_842946_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.09184e-146
NC_014121.1\|WP_023620045.1\|829766_830915_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_014121.1\|WP_013095539.1\|841743_842121_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	9.40134e-77
NC_014121.1\|WP_013095538.1\|840890_841739_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NC_014121.1\|WP_013095527.1\|826265_826766_+\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	3.46545e-76
NC_014121.1\|WP_013095529.1\|827334_828285_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NC_014121.1\|WP_013095526.1\|823449_826266_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_014121.1\|WP_020688470.1\|822477_823404_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.41429e-172
NC_014121.1\|WP_013095536.1\|837868_838399_+\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	3.31021e-134

>NC_014121.1|WP_013095533.1|834297_834531_+|YgdI/YgdR-family-lipoprotein
MQNKLLIASVLAATAMFTVAGCSSNQAVKTTDGRTIITDGKPQVDDDTGLVSYKNAETGQTEQINRDQVKSMGELDN
>NC_014121.1|WP_013095532.1|830933_834158_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGIAHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFSVNPKTGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAELGINGLDADFLRMLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSVDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKATGIPLAKVAARVMAGQTLAQQGVTKEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKSGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRQAIEDSKLIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQINK
>NC_014121.1|WP_023620045.1|829766_830915_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFIGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNAADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNLDAALALEKAKAFPGLNGMDLAKEVTTTEAYSWTQGSWTLSDDLPEAKKESELPFHVVAYDFGAKRNILRMLVDRGCRLTVVPAKTSAEDVLKMNPDGIFLSNGPGDPAPCDYAIDAIKSFLETDIPVFGICLGHQLLALASGANTIKMKFGHHGGNHPVKDIDNNTVMITAQNHGFAVDEASMPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NC_014121.1|WP_013095530.1|828490_829312_+|4-hydroxy-tetrahydrodipicolinate-reductase
MHDAQIRVAIAGAGGRMGRQLIQAALQMDGVALGAALEREGSSLLGADAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLTHLAFCRQHGKGMVIGTTGFDEAGKQAIQDASHEIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIVEAHHRYKVDAPSGTALAMGEAIAHALDKDLKDCAVYTREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERVEITHKASSRMTFANGAVRSALWLKGKENGLFDMRDVLDLNNL
>NC_014121.1|WP_013095529.1|827334_828285_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQILLANPRGFCAGVDRAISIVENALEIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPEDVLTLNVKNEARLSFMTQTTLSVDDTSDVIDALRQRFPKIVGPRKDDICYATTNRQEAVRALAEQADVVLVVGSKNSSNSNRLAELAQRMGKAAFLIDDATDIQEAWVKNAACVGVTAGASAPDILVQNVITRLQELGGGEAVPLEGREENIVFEVPKELRIDAREVE
>NC_014121.1|WP_013095528.1|826883_827333_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSKSVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDTSLSEGLEQQLLGLKEGEKKAFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGRTVHFDIEVLEIDPVLEA
>NC_014121.1|WP_013095527.1|826265_826766_+|signal-peptidase-II
MSKTLCSTGLRWLWLVVVVLIIDLGSKFLILQNFALGDTVPLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGICVVLAVLMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADSAICIGAALIVLEGFLPKPAAKEQA
>NC_014121.1|WP_013095526.1|823449_826266_+|isoleucine--tRNA-ligase
MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLAGYDSPYVPGWDCHGLPIELKVEQEFGKPGEKFTAAEFRAKCREYAATQVDGQRADFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFEAVDQDAIKGKFGLPGVSGPISLVIWTTTPWTLPANRAISLSGEFEYALVQIDGQALILAKDLVESVLKRANITDYTVLGTVKGDALELMRFKHPFLDFDVPAILGDHVTLEAGTGAVHTAGGHGPDDYNISLKYGLEIANPVGPDGSYLPGTYPSLDGINVFKANDIIVEMLRERGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLREQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKETHELHPNTLELMEEVAKRVEVDGIQAWWDLDARDILGADADNYEKVPDTLDVWFDSGSTHASVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDIVKAYESYDFHEVVQRLMRFCSIEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPIMSFTADEIWGYLPGEREKYVFTGEWYEGLFDLSTTEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALGDELRFVLLTSGAKVADYADASADAQQSELLKGLKVALSKAEGEKCPRCWHYTTDVGQVAEHADICGRCVSNVAGDGEKRKFA
>NC_014121.1|WP_020688470.1|822477_823404_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKLIRGIHNLSKAPHGCVLTIGNFDGVHRGHQALLQGLRKEGEARGLPVVVMIFEPQPLELFAGDKSPARLTRLREKLRYLAQSGVDYVLCVRFDRRFAALTAQNFVSDLLVKRLGVQFLAVGDDFRFGAGRQGDFLLLQKAGLEYGFDVTSAMTFCEGGVRVSSTAVRQALANDELETAENLLGHPFTISGRVVHGDALGRTIGFPTANIPLRRQVSPVKGVYAVEVAGLGEKPFYGVANIGTRPTVAGVRQQLEVHLLDVVMDLYGRHIDVILRKKIRNEQRFASLDELKAQIARDELTAREFFGL
>NC_014121.1|WP_003856458.1|821886_822150_-|30S-ribosomal-protein-S20
MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQNAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA
>NC_014121.1|WP_013095536.1|837868_838399_+|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQVRTLDNIEIRSLYQLYPDFNIDIAAEQEALTRADLIIWQHPMQWYSTPPLLKLWIDKVFSHGWAYGHNGHALKGKSLMWAVTTGGGESHFDIGSFPGFEVLAQPLQATALYCGLTWLPPFAMHCTFVCDDETLQAQARHYKQRLLEWQETHNG
>NC_014121.1|WP_013095537.1|838391_840257_+|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGAAALIVPVAVRLGLGSVLGYLIAGCVIGPWGFRLVTDAEAILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMAACGLLLGGFCILLGMDWKVAELIGMTLALSSTAIAMQAMNERNLTVSQMGRSAFSVLLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVVGALALVVLLGRYVTRPLLRFVARSGLREVFSAVALFLVFGFGLLLEEAGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLVTHPLRILILLVGFLVIKMVMLWLIARPLNVPGRQRLWFAVLLGQGSEFAFVVFGAAQMANVLDPEWAKALTLAVALSMAATPILLVLLTRLEKTGSEQEREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVILDHDPDHVDTLRKFDMKVFYGDATRVDLLESAGAAKAEVLINAIDDPQTSMQLVELVKEHFPNLTIISRARDVDHYIQLRQAGVDAPERETFEGALKSGRMALESLGLGAYEARERADLFRRFNTDMVEEMVAMAGSTATERAAVFKRTSAMLTEIINEDRNHLSLVQRHGWQGTEEGKHTGDPADEPESKPSA
>NC_014121.1|WP_008502023.1|840371_840851_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRTTLNKPVVMGRLTWESIGRPLPGRKNIVISSQPGTDDRVEWVKSVDEAIAACGNAEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NC_014121.1|WP_013095538.1|840890_841739_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLKQVDFTPGRDILWLTGDLVARGPGSLEVLRFVKSLGDSVRMVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELINWLRRQPLLQIDEEKKLVMAHAGITPQWDLETAKTCARDVEAVLASDSYPFFLDAMYGDMPNHWSEDLSGLARLRFITNAFTRMRFCFPNGQLDMYSKETPESAPAPLKPWFAIPGPVTSEYSVVFGHWAALEGKGTPEGIYGLDTGCCWGGDLTCLRWEDKTYFVQPSNRQLDLGEGEAVAS
>NC_014121.1|WP_013095539.1|841743_842121_-|Co2+/Mg2+-efflux-protein-ApaG
MIDSPRVCVQVQSVYVESQSSPDEERFVFAYTVTIRNLGRMPVQLLGRYWLITNGNGREIEVQGEGVVGEQPHIAPGEEYQYTSGAVIETPLGTMQGHYEMVDVDGNVFRVAIPVFRLAVTTLIH
>NC_014121.1|WP_013095540.1|842124_842946_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MTNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDELTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELSEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYFCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHKTMPYPVKDLRVLSRITTEAFNQRRKTIRNSLGNLFTVDVLAELGIDPAMRAENISVEQYCKLANYISENAPPKES
>NC_014121.1|WP_013095541.1|842942_843929_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKQHRVVITPGEPAGIGPDLVVQLAQRSWPVELVVCADATLLQDRASLLGLPLTLIPYVEGQQPAPQQAGTLTLLPVPLRTPVIPGQLSTENGHYVVETLARACDGCIKGEFAALITGPVHKGVINEAGIPFTGHTEFFEERSHSPKVVMMLATEAMRVALVTTHLPIKAIPDAITPELLREIIGILHHDLQTKFGIKQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLNEMRAKGMNLSGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALDLAGQGKADVGSFITALNLAIKMIVNTQ
>NC_014121.1|WP_013095542.1|843928_845215_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGVAMVANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMKSVKLNSGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKITDEQLDQAIANIAKQNNMTLDQMRSRLAYDGISYSTYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPENPTSDQAAEAESQARAIVEQARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARAKLQQIAADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQEQRASAYVKVLSN
>NC_014121.1|WP_013095543.1|845268_847620_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIGTALYSQQGLAADLASQCMLGVPSYNRPLVSGDTNSLPVTITADSSKGTYPDNATFTGSVDINQGNSRLQADEVQLHQKQPEGAAEPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILENGSFTSCLPGSNTWSVVGSEVIHDREEQVAEIWNARFKLGPVPVFYSPYLQLPVGDKRRSGFLIPNAKYSTSNYFEFYLPYYWNIAPNMDATITPHYIHKRGNVMWENEFRYLTQAGTGLMELDYLPSDKVFQDEHPTEGDKHRWMYFWRHAGVMDQVWRFNVDYTKVSDPYYFNDFDSKYGSSTDGYATQKFSVGYAIQNFNATVSTKQFQVFDSQTRSTYGAEPQLDVNWYQNDVGPFDTRVYAQAVHFVNTNSDMPEATRVHLEPTINLPVSNNWSSLNTEAKLMATHYQQKNVDWYNNRYGTDLDESVNRVLPQFKMDGKLIFERDMGLLADGYTQTLEPRMQYLYVPYRDQSKIQNYDSAFLQSDYSGLFRDRTYGGLDRIASANQLTTGVTTRVYDESAVERFNVSVGQIYYFTESRTGDDNINWEKDNKTGSLVWAGDTYWRMTDRWGLRGGLQYDTRLDNIATSSAAVEYRRDEDRMVQLTYRYASPEYIQATLPNYATSEQYKDGISQVGGAASWPIADRWSIVGAYYFDTNANKPADQMVGLQYNSCCYALRVGYERKLNGWDTQNNQSKYDNVIGFNVELRGLSSNYGLGTQQMLRSNILPYRSSL
>NC_014121.1|WP_013095544.1|847859_848678_+|co-chaperone-DjlA
MQYWGKIIGVAFAIIMGAGFWGIVLGLIIGHMFDKARSRKMAWFANQRERQSLFFSTTFEVMGHLTKSKGRVTEADIQIASVFMDRMNLHGESRVAAQNAFRIGKSDNYPLREKMRQFRSICFGRFDLIRMFLEIQIQAAFADGSLHPNERDVLYVIAEELGISRMQFDQFLRMMQGGAHFGGGYQQHQSSGGGWQQAQRGPTLEDACNVLGVKPSDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKNFK

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Crispr_ID: NC_014121_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014121_3

1247976-1248108

Orphan

Consensus_repeat	Method
GATTGCCGTTTTTAGTATTTATTCCCTCTCCCTGTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014121_3

>merge|NC_014121|3|1247976-1248108|CRISPRCasFinder
GATTGCCGTTTTTAGTATTTATTCCCTCTCCCTGTGGGAGAGGGCCAGGGTGAGGGCATCAGGCCGCACAAGGTAAAAGCAAAACGGCAATCCCTGATTGCCGTTTTTAGTATTTATTCCCTCTCCCTGTGGG

>NC_014121|3|2|1247976-1248108|CRISPRCasFinder
GATTGCCGTTTTTAGTATTTATTCCCTCTCCCTGTGGG	AGAGGGCCAGGGTGAGGGCATCAGGCCGCACAAGGTAAAAGCAAAACGGCAATCCCT
GATTGCCGTTTTTAGTATTTATTCCCTCTCCCTGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014121.1\|WP_013095880.1\|1253769_1254840_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|181929
NC_014121.1\|WP_013095867.1\|1240871_1241918_-\|PLP-dependent-cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|223110
NC_014121.1\|WP_013095864.1\|1237447_1238143_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|182967
NC_014121.1\|WP_013095874.1\|1249630_1250158_+\|YbaY-family-lipoprotein	unknown	unknown	gnl\|CDD\|225668
NC_014121.1\|WP_013095882.1\|1258069_1258873_-\|nickel/cobalt-efflux-protein-RcnA	unknown	unknown	gnl\|CDD\|236641
NC_014121.1\|WP_013095877.1\|1251279_1251495_+\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_013095865.1\|1238209_1239910_-\|SgrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226909
NC_014121.1\|WP_013095863.1\|1237115_1237445_+\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|226162
NC_014121.1\|WP_013095881.1\|1254943_1258036_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|236548
NC_014121.1\|WP_013095879.1\|1253080_1253692_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225239
NC_014121.1\|WP_013095878.1\|1251573_1252995_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_014121.1\|WP_013095869.1\|1242522_1244295_+\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182732
NC_014121.1\|WP_013095868.1\|1242033_1242492_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_014121.1\|WP_008503304.1\|1246291_1246630_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|182629
NC_014121.1\|WP_013095870.1\|1244287_1246069_+\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|182733
NC_014121.1\|WP_013095866.1\|1240011_1240830_+\|HMP-PP-phosphatase	unknown	unknown	gnl\|CDD\|185080
NC_014121.1\|WP_013095872.1\|1246665_1247952_+\|ammonium-transporter-AmtB	unknown	unknown	gnl\|CDD\|182630
NC_014121.1\|WP_013095876.1\|1251031_1251283_+\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_013095873.1\|1248566_1249427_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|182519
NC_014121.1\|WP_013095875.1\|1250187_1250499_-\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219

Protein	Function_ID	Function_description	E-value
NC_014121.1\|WP_013095880.1\|1253769_1254840_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|181929	PRK09526, lacI, lac repressor; Reviewed.	0
NC_014121.1\|WP_013095867.1\|1240871_1241918_-\|PLP-dependent-cysteine-synthase-family-protein	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	5.33529e-112
NC_014121.1\|WP_013095864.1\|1237447_1238143_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|182967	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional.	0
NC_014121.1\|WP_013095874.1\|1249630_1250158_+\|YbaY-family-lipoprotein	gnl\|CDD\|225668	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown].	8.00749e-53
NC_014121.1\|WP_013095882.1\|1258069_1258873_-\|nickel/cobalt-efflux-protein-RcnA	gnl\|CDD\|236641	PRK10019, PRK10019, nickel/cobalt efflux transporter RcnA.	4.13129e-163
NC_014121.1\|WP_013095865.1\|1238209_1239910_-\|SgrR-family-transcriptional-regulator	gnl\|CDD\|226909	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only].	0
NC_014121.1\|WP_013095863.1\|1237115_1237445_+\|putative-addiction-module-antidote-protein	gnl\|CDD\|226162	COG3636, COG3636, Predicted transcriptional regulator [Transcription].	3.03129e-24
NC_014121.1\|WP_013095881.1\|1254943_1258036_+\|beta-galactosidase	gnl\|CDD\|236548	PRK09525, lacZ, beta-galactosidase.	0
NC_014121.1\|WP_013095879.1\|1253080_1253692_+\|membrane-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	9.66804e-37
NC_014121.1\|WP_013095878.1\|1251573_1252995_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.26057e-88
NC_014121.1\|WP_013095869.1\|1242522_1244295_+\|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	0
NC_014121.1\|WP_013095868.1\|1242033_1242492_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.31658e-53
NC_014121.1\|WP_008503304.1\|1246291_1246630_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|182629	PRK10665, PRK10665, P-II family nitrogen regulator.	1.73427e-66
NC_014121.1\|WP_013095870.1\|1244287_1246069_+\|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein	gnl\|CDD\|182733	PRK10790, PRK10790, SmdB family multidrug efflux ABC transporter permease/ATP-binding protein.	0
NC_014121.1\|WP_013095866.1\|1240011_1240830_+\|HMP-PP-phosphatase	gnl\|CDD\|185080	PRK15126, PRK15126, HMP-PP phosphatase.	0
NC_014121.1\|WP_013095872.1\|1246665_1247952_+\|ammonium-transporter-AmtB	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	0
NC_014121.1\|WP_013095873.1\|1248566_1249427_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|182519	PRK10526, PRK10526, acyl-CoA thioesterase II; Provisional.	0
NC_014121.1\|WP_013095875.1\|1250187_1250499_-\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	5.40483e-51

>NC_014121.1|WP_013095872.1|1246665_1247952_+|ammonium-transporter-AmtB
MKIATIKTGLGSLALLPGLAMAAPAVADKADNAFMMISTALVLFMSIPGIALFYGGLIRGKNVLSMLTQVAVTFALVCVLWVVYGYSLAFGEGNAFFGNFNWAMLKNIELTAVMGSFYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYVPIAHMVWGGGLLASHGALDFAGGTVVHINAAVAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYFGWFGFNAGSASAANEIAALAFVNTVVATAGAILSWVFGEWAVRGKPSLLGACSGAIAGLVGITPACGYVGVGGALLVGLVSGLAGLWGVTALKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAAKSLGGVGYAEGVDMVHQVLVQLESIAITVVWSAVVAFIGYKLADMTVGLRVPEEQEREGLDVNSHGENAYNA
>NC_014121.1|WP_008503304.1|1246291_1246630_+|P-II-family-nitrogen-regulator
MKLVTVVIKPFKLEDVREALSSMGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDVISKAAYTGKIGDGKIFVAELQRVIRIRTGESDEAAL
>NC_014121.1|WP_013095870.1|1244287_1246069_+|SmdB-family-multidrug-efflux-ABC-transporter-permease/ATP-binding-protein
MRKSKTQWPTLKRLLAYGSPWRKPLALAVVLLWIAAIAEVSGPLLISYFIDNMVAKSYLPLGLVAGLGVAYVGLQLAAAGLHYAQSLLFNRAAVGVVQKLRTDVMDAALRQPLSEFDIQPVGQVISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIAIFPAVLIVMVIYQRYSTPIVRRVRTYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGLSPGGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDRPRQTYGEDTAPLQSGAITFDHVSFAYREDRLVLQDINLDVPSRGFVALVGHTGSGKSTLASLLMGYYPLTKGEIRLDGRPLASLSHSVLRKGVAMVQQDPVVLADTFYANVTLGRDYTEEQVWAVLEKVQLAELARGFSDGINTRLGEQGNNLSVGQKQLLALARVLIETPQVLILDEATASIDSGTEQAIQQALAAVRDHTTLVVIAHRLSTIVDADTILVLHRGQAVERGTHRALLEAKGRYWQMYQLQLAGEELAASVREEESLSA
>NC_014121.1|WP_013095869.1|1242522_1244295_+|SmdA-family-multidrug-ABC-transporter-permease/ATP-binding-protein
MRLFAQLSWYFRREWQRYLGAVLLLIIIAILQLIPPKVVGYVVDGVTEQHYTTARVLMWVGTLVLTAVIVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLIARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPLMALAINRYGEQLHERFKLAQAAFSSLNDRTQESMTSIRMIKAFGLEDRQSALFAADAADTGAKNMRVARIDARFDPTIYIAIGMANLLAVGGGSWMVVQGTLTLGQLTSFAMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLSEAPVVNDGTEPVPEGRGVMNVNIRTFVYPQTEHPVLENVSFTLQPGQMLGICGPTGSGKSTVLSLLQRHFDVTQGDIRFHNLPLTTLQLDDWRRRLAVVSQTPFLFSDTVANNIALGCPSATQEEIEHVARLASVHDDILRLPQGYETEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWSDGRTVIISAHRLSALTEASEILVLQHGHIAQRGQHDQLAEQPGWYRDMYRYQQLEAALDDAPEQEEEDANA
>NC_014121.1|WP_013095868.1|1242033_1242492_+|Lrp/AsnC-family-transcriptional-regulator
MLDKVDRKLLSLLQSDCTLSLQALADAVNLTTTPCWKRLKKLEDDGILLGRVALLDPEKLGLGLTAFVLIKTQHHSSEWYCRFVNQVSDMPEVLGFWRMAGEYDYLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTALPIE
>NC_014121.1|WP_013095867.1|1240871_1241918_-|PLP-dependent-cysteine-synthase-family-protein
MNSNWVKHAISEINADYQRSADTHLIRLALPGFAGIQLYLKDESTHPTGSLKHRLARSLFLYGLCNGWIKEGTTIIESSSGSTAVSEAYFARLLGLPFIAVMPSCTAKRKIEQIEFYGGRCHFVESACEIYAASEMLARELNGHYMDQFTFAERATDWRGNNNIADSIFRQMTHEPHPVPSYIVMSAGTGGTSATIGRYIRCQGYDTQLMVVDPQNSVFLDYWQSRNADLRSPVGSKIEGIGRPRVEPSFIPDVVDEMLRVPDAASVATAHWLETQLGRKVGASTGTNMWGALQLAARMREEGRTGSIVTLLCDSGERYLETYYNAEWVQANIGDIAPWQAQIAQLVK
>NC_014121.1|WP_013095866.1|1240011_1240830_+|HMP-PP-phosphatase
MARLAAFDMDGTLLMPDHRLGEKTLNTLKRLRERDVTLTFATGRHVLEMRHLLGAFSLDAFLITGNGTRIHSVEGEVLHRQDLNPEVADIVLHSTWDTQASVHVFNDNGWFTGREIPQLLHAHVYSGFRYQLMDLRRIPAHAVTKICFCGDHDDLCRLRIQLNEALGDRAHLTFSAVDCLEVLPVGCNKGSALAVLSDHLGLTLQECMAFGDAMNDREMLGSVGRGLIMENAMPQLISALPHLPVIGHCRNEAVSHFLTHWLDNNTLPYSPE
>NC_014121.1|WP_013095865.1|1238209_1239910_-|SgrR-family-transcriptional-regulator
MRQLNRLKQYQRLWQPSEGAPQQVTIAELASRCFCSERHVRTLLRQAQEAGWLNWHAQPGRGKRGELRFYVSPESLRNTMMEEALKHGQQHNALELAQLAPEELRELLHPFLGGQWQNDTPTLRIPYYRSLDALQPGFLPGRAEQHLAGQVFSGLTRFNGNSSEPTGDLAHHWEVTDGGLRWHFYIRSTLHWHNGDKIETTQLQRSLKALLMLPALRKLFQSVLDIEVTHPQCLTFTLHQPDYWLPHRLATYCSRLAHPDQPMTGSGPFRLSVFDSELVRLESHEQYHLSHPLIKAIEYWITPTLFDYGLGTSCRHPVQIAIGEPDELESLRLVSNSTSLGFCYLTLKQRDRMNELQARRLINIIHLSTLLHTLPLNEGLITPTEELLPGLPIPRWPDLTHVPLPAALTLVYHLPVELHTMANQLKQYLAQQGCELTVIFHDAKTWDGCPQLADADMMMGDRLIGEAPEYTLEQWLRCDTLWPHLLSAPQVAHLQATLDAVQTQADEQARHAGLRAIFTRLMDNAVLTPLFNYQYQISAPPGVNGIRLNTRGWFDFTEAWLPAPRS
>NC_014121.1|WP_013095864.1|1237447_1238143_-|7-cyano-7-deazaguanine-synthase-QueC
MKRAVVVFSGGQDSTTCLVQALHQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYKPDASGIPNTFVPGRNILFLTLTAIYAYQVQAEAVITGVCETDFSGYPDCRDEFVKALNHAVNLGMAKETRFETPLMWLDKAETWALADYWGKLDLVRSETLTCYNGIKGDGCGQCAACNLRANGLNHYLADKAGVMAAMQKKTGLK
>NC_014121.1|WP_013095863.1|1237115_1237445_+|putative-addiction-module-antidote-protein
MSTSKRHYSSSVNHHDAVVKMLRENPSYAQLYLQIALEEIYEDQGIPAYLIALRQVIESRGGIGEIAAKAGLSRQQLYRTLSDNGNPTLTTLMKVTRAAGVKLFDSTVK
>NC_014121.1|WP_013095873.1|1248566_1249427_-|acyl-CoA-thioesterase-II
MSQALNNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPADRLVHSFHSYFLRPGDSAKPIVYDVEVLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEPGYEHQKTMPAAPSPDDLKSETDIARALAHLLPPQVKEKFLCDKPLEIRPVEFHNPMKGHTAEPKRQVWIRANGTVPEDFRVHQYLLGYASDFNFLPVALQPHGVGFLEKGMQVATIDHSMWFHRPFNMNDWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNRG
>NC_014121.1|WP_013095874.1|1249630_1250158_+|YbaY-family-lipoprotein
MKLVPMLSGVAIAVALSACAGKSAQVPVPAADPNGINTLSQQSIQQPNVSGTIWIKQRVALPPDAVLTVTLSDASLADAPSKVVAQRAVRTEGKQAPFSFVLPYNPADVQPNARILLSAAVTINGKLVFITDTVQEAINNGGTKIDLNLVPVQQTEVPIAPQTNQPSVPTPPTQL
>NC_014121.1|WP_013095875.1|1250187_1250499_-|MGMT-family-protein
MDEHDSFPQRVWQIVASIPEGYVTTYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGAISLTGPDLQRQRQALLSEGVQVSGSGQIDLQKYRWVY
>NC_014121.1|WP_013095876.1|1251031_1251283_+|hypothetical-protein
MATAVLNVKIDEALKDRLRHYAEVNNENLSVTTEKLLLLAFEAADEVGVSEEDIDNQHTEEESVTPFTPKEIKALRKLLKKRK
>NC_014121.1|WP_013095877.1|1251279_1251495_+|hypothetical-protein
MKQQLSTASDYKEACDLLRSGYVKHVRLGWNVGSDEFFRIASDWCDTGAKIKKDGESFVISLKGFPIPPQH
>NC_014121.1|WP_013095878.1|1251573_1252995_-|PLP-dependent-aminotransferase-family-protein
MSSRRFGSQSLVRLLGHWQQTPSRTPLWRQLADALRLLILDGRLALSTRLPGERELATALDVSRTTISSALAHLREEGYLESRHGSGSRVILPDTRAIPTLSAASAALDLSTAALNAGPEIHQAYTWALAAITQHLTLTGYDQLGLAALRDAIAARYTARGLPTRADEVMVVNGAVSGFALVLRMMAGPGDRVVVDHPTYPLAIAAIQGASCRPVGVSLPESGWDTDGFAATLAQTAPRLAYLMPDFHNPTGRCMDIATRQAITDIAARTRTTLVVDETMVDLWFEAPPPPPLASFNSQATVITLGSAGKSFWGGLRLGWIRASSRTIATLAQTRDTLDLGSPLLEQLATLWLISNSETFLPARRKILKERRDRCGELLREHFPQWRFQEAEGGLSYWIELPGMLATQLAARAEMLGINLGTGTRFGLSGAFDRYLRMPFSLESAELEQALLRIKPVWLALNKTAPSVKRSLV
>NC_014121.1|WP_013095879.1|1253080_1253692_+|membrane-protein
MVRRLLQLYVGLGLYGLSTAMFIRSDLGVDPWDVFHLGVGLQLGMTIGTVIILTGAAVLLLWIPLRQMPGLGTLSNVVCIGLAADASMALIPELDLLPIRIALLVGGIVLNAIATGMYIGAGFGAGPRDGLMTGIHARLGWSIRSVRTSIEVSVLLIGCVLGGTFGVGTVLYALTIGPLIQLCLPWFRQKPRTDNVPQPERVV
>NC_014121.1|WP_013095880.1|1253769_1254840_+|substrate-binding-domain-containing-protein
MKAITLYDVALLAGVSYQTVSRVINDAEHVSARTREKVQQAMAELHYVPNRGAQQLAGKRIRTLGLITTDLALHAPSQIVSAVKSRAVEKGASVLISMVEHPQQCQTALQELLAQRVEALLVNVPLDDPHAEQLKALASPVPVLFLDVSPSAVVNSLVFNAEQGARLGVEHLLSLGHQRIALLSGPESSVSARARLAAWKAALAEAGLEAAAVAYGDWSAACGYEKGHALLSAATLPDAILVANDQMALGVMRACAEKGVTIPGQISIVGFDDTADSAWFSPPLTTIRQAFREAGEQSVEWLLAPARHEACWQVQLPVTLISRQSSARRTPQQADREDLAQQLRSLALLAEQLARQ
>NC_014121.1|WP_013095881.1|1254943_1258036_+|beta-galactosidase
MSNTVSLTLSALLARRDWENPGVTQWNRLAAHAPFHSWRNEHAAREDAASISRRSLNGEWRFSFFSAPEQVPQAWTGEDCPDAVAMPVPSNWQMQGVDTPVYTNVTYPIPVNPPFVPAENPIGCYSLTFEVEDAWLEGGQTRIIFDGVNSAFHLWCNGQWVGYSQDSRLPAEFDLSGVLRAGQNRLAVMVLRWCDGSYLEDQDMWRMSGIFRDVSLLHKPETYIADYQVVTDLNAELDRSVLKVDVSLAGAHFAECEVAITLWRNGERCASATRRPGSAIVDERGNWAERLTVAIPVASPALWSAETPALYRLTIALLDPQGEVLEIEACDVGFRRVEISNGLLKLNGKPLLIRGVNRHEHHPENGQVMDEATMRRDIEIMKQHNFNAVRCSHYPNHPLWYRLCDRYGLYVVDEANIETHGMVPMSRLADDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGHGANHDALYRWLKTADPTRPVQYEGGGANTAATDIICPMYARVDQDQPFPAVPKWSIKKWIGLPDETRPLILCEYAHAMGNSFGGFARYWQAFRSHPRLQGGFVWDWVDQALTKKDENGTPFWAYGGDFGDTPNDRQFCLNGLVFPDRTPHPALYEAQRAQQFFTFTRVSTSPLVVDVQSDYLFRHTDNELLRWSVTRDGTVLAKGEVTLSIAPQETQRLDISLPALTAEPGEVWLNVEVYQLKATPWSPENHRCAWDQWPLPAPLFIAPPAPVGVPPVLTQTDEMLTLTHQQQRWIVDRTSGHLTQWLNNGVETLLSPLTDNFTRAPLDNDIGVSEATRIDPNAWVERWKAAGMYDITPRLLRCEGEQHAREAVVTTLHAWEHLGKALFLSRKVWRVDDQGVLHGEVEVEVASDIPEPARIGLSMHLARPPEAVHWLGLGPHENYPDRKLAAQQGRWTLPLQAMHTPYIFPTENGLRCDTRELVLGTHQLNGQFHFSVSRYSQQQLRETTHHHLLRDEPGYWLNLDAFHMGVGGDDSWSPSVSPEFILQNCQLRYRFSWRQNLN
>NC_014121.1|WP_013095882.1|1258069_1258873_-|nickel/cobalt-efflux-protein-RcnA
MNDFASLLQQGNAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAIRGTLKQAVLLGLAATLSHTAVVWIIAMAGLWFGRGWDAQTSEPWFQLISGVLIVLIALWMAWRTWKENQPHDHHHHHDHDHHHDHHHHEHQLVAEEWQDVHQRAHAQDINRRFNGQNVTTGQIAMFGLTGGLIPCPASITVLLICLQLKHFALGATLVFSFSIGLALTLVASGAIAALSLKHATKRWPGFSEFSRKAPWFSAALIILVGGYMILHGLGGILA

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Crispr_ID: NC_014121_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014121_4

2752541-2752637

Orphan

Consensus_repeat	Method
TGCACTACCCCCTAGTGAATCTCCTGCACTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014121_4

>merge|NC_014121|4|2752541-2752637|CRISPRCasFinder
TGCACTACCCCCTAGTGAATCTCCTGCACTATGGGGTGAATCTCCTGCACCAGGTAGTGAACTATTTGCACTACCCCCTAGTGAATCTCCTGCACTA

>NC_014121|4|3|2752541-2752637|CRISPRCasFinder
TGCACTACCCCCTAGTGAATCTCCTGCACTA	TGGGGTGAATCTCCTGCACCAGGTAGTGAACTATT
TGCACTACCCCCTAGTGAATCTCCTGCACTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014121.1\|WP_013097272.1\|2745096_2746242_+\|FMNH2-dependent-alkanesulfonate-monooxygenase	unknown	unknown	gnl\|CDD\|234821
NC_014121.1\|WP_013097280.1\|2757670_2758249_+\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_044158720.1\|2758260_2759004_+\|ORF6N-domain-containing-protein	unknown	unknown	gnl\|CDD\|378443
NC_014121.1\|WP_013097278.1\|2756660_2757068_+\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_013097271.1\|2744137_2745100_+\|sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236929
NC_014121.1\|WP_013097276.1\|2750899_2751139_+\|DinI-family-protein	unknown	unknown	gnl\|CDD\|368780
NC_014121.1\|WP_006811079.1\|2756443_2756668_+\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_102135191.1\|2754491_2755277_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NC_014121.1\|WP_044158724.1\|2755950_2756337_+\|S24-family-peptidase	unknown	unknown	gnl\|CDD\|119397
NC_014121.1\|WP_013097268.1\|2741601_2742144_-\|cell-division-protein-ZapC	unknown	unknown	gnl\|CDD\|369220
NC_014121.1\|WP_013097274.1\|2747039_2747810_+\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NC_014121.1\|WP_072072180.1\|2754259_2754442_-\|transcriptional-regulator	unknown	unknown	unknown
NC_014121.1\|WP_013097270.1\|2743569_2744145_+\|NADPH-dependent-FMN-reductase	unknown	unknown	gnl\|CDD\|182557
NC_014121.1\|WP_013097279.1\|2757257_2757671_+\|hypothetical-protein	unknown	unknown	unknown
NC_014121.1\|WP_013097273.1\|2746251_2747043_+\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	unknown	unknown	gnl\|CDD\|183100
NC_014121.1\|WP_087451024.1\|2751241_2752362_+\|IS3-like-element-ISSen4-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_014121.1\|WP_013097275.1\|2747861_2750474_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NC_014121.1\|WP_013097269.1\|2742309_2743320_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_014121.1\|WP_088581786.1\|2753067_2754215_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_014121.1\|WP_044158727.1\|2755452_2755884_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|182039

Protein	Function_ID	Function_description	E-value
NC_014121.1\|WP_013097272.1\|2745096_2746242_+\|FMNH2-dependent-alkanesulfonate-monooxygenase	gnl\|CDD\|234821	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.	0
NC_014121.1\|WP_013097271.1\|2744137_2745100_+\|sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236929	PRK11553, PRK11553, alkanesulfonate transporter substrate-binding subunit; Provisional.	0
NC_014121.1\|WP_013097276.1\|2750899_2751139_+\|DinI-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	1.5259e-23
NC_014121.1\|WP_102135191.1\|2754491_2755277_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.00785e-17
NC_014121.1\|WP_044158724.1\|2755950_2756337_+\|S24-family-peptidase	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.54761e-10
NC_014121.1\|WP_013097268.1\|2741601_2742144_-\|cell-division-protein-ZapC	gnl\|CDD\|369220	pfam07126, ZapC, Cell-division protein ZapC. ZapC is one of four FtsZ-binding components of the Z ring in bacteria. Formation of the Z ring on the cytoplasmic surface of the membrane is the starting process for assembly of the cell-division apparatus. It binds directly to the Z ring, and although it is not essential for absolute cell division it contributes to it by enhancing the interactions between the FtsZ protofilaments (or polymers) which aggregate to form the ring conformation in the Z ring.	3.86419e-90
NC_014121.1\|WP_013097274.1\|2747039_2747810_+\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	1.81705e-173
NC_014121.1\|WP_013097270.1\|2743569_2744145_+\|NADPH-dependent-FMN-reductase	gnl\|CDD\|182557	PRK10569, PRK10569, NAD(P)H-dependent FMN reductase; Provisional.	2.67011e-130
NC_014121.1\|WP_044158720.1\|2758260_2759004_+\|ORF6N-domain-containing-protein	gnl\|CDD\|378443	pfam10543, ORF6N, ORF6N domain. This domain was identified by Iyer and colleagues.	1.26334e-13
NC_014121.1\|WP_013097273.1\|2746251_2747043_+\|aliphatic-sulfonate-ABC-transporter-permease-SsuC	gnl\|CDD\|183100	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC.	2.28771e-167
NC_014121.1\|WP_087451024.1\|2751241_2752362_+\|IS3-like-element-ISSen4-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.17692e-34
NC_014121.1\|WP_013097275.1\|2747861_2750474_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NC_014121.1\|WP_013097269.1\|2742309_2743320_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NC_014121.1\|WP_088581786.1\|2753067_2754215_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.09085e-73
NC_014121.1\|WP_044158727.1\|2755452_2755884_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|182039	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed.	2.67647e-10

>NC_014121.1|WP_087451024.1|2751241_2752362_+|IS3-like-element-ISSen4-family-transposase
MKKRFSDEQIISILREAEAGVPARELCRKHAISDATFYTWRKKYGGMEVPEVKRLKSLEEENARLKKLLAEAMLDKEALQVALGRKLLTTDQKREAVMLMCDATGLSQRRACRLTGLSLSTCRYEAHRPAADAHLSGRITELALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGLGVKRRRRRKGLATERLPLLRPAAPNLTWSMDFVMDALSTGRRIKCLTCVDDFTKECLTVTVAFGISGVQVTRILDSIALFRGYPATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSDIVHARKIINDWRQDYNECRPHSTLNYQTPSEFAAGWRKGHSENEDSDVTN
>NC_014121.1|WP_013097276.1|2750899_2751139_+|DinI-family-protein
MFVELVYDKRNVAGLEGAREIILAELTKRVHQIFPDAEVKVKPMQANALNSNASKSDREKLNRMLEEMFEDANMWLVND
>NC_014121.1|WP_013097275.1|2747861_2750474_-|aminopeptidase-N
MTQQPQAKYRHDYRAPDYLISDIDLTFDLDATKTVVTAVSQVTRQSATAVPLRLDGEDLTLVSLHINDAAWTDYKEEDNQLVIDNLPERFTLRIVNEISPAANTALEGLYQSGVALCTQCEAEGFRHITWYLDRPDVLARFTTKIIADKTLYPFLLSNGNRVGEGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFKTRSGREVALELFVDRGNLDRAPWAMTSLINSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDKVIEMNNFYTLTVYEKGAEIIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQAGTPIVTVKDDYNPETEQYTLTISQRTPPTAEQEEKYPLHIPFSIELYDNEGKVIPLQKGGHPVHHVLNVTQAEQTFIFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVNRHQQGQPLSLPVHVADAFRAVLLDEQIDPALAAEILTLPSATEIAELFETIDPIAIVAVREALTRTLAAELADEFLAIYNANKLDAYRVEHDDIGKRSLRNTCLRYLAFGETDLANTLVSKQYHEADNMTDALAALAASVAAELSCRDALMQEYDDKWHQDGLVMDKWFILQATSPAADALSNVRSLLKHRSFTMSNPNRVRSLIGAFASSNPAAFHAEDGSGYQFMVEMLTELNSRNPQVASRLIEPLIRLKRYDTQRQAKMRAALEQLKGLENLSGDLYEKISKALA
>NC_014121.1|WP_013097274.1|2747039_2747810_+|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MNTARLTKGTPLLLNGVTKRYGDKTILNALDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLEAPNGGEILAGTTPLANIQDDTRMMFQDARLLPWKTVIDNVGLGLKGHWREEARQALAAVGLEDRAGDWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIASLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDISRPRRVGSARLAELEAEVLERVMRRGVNERALITANA
>NC_014121.1|WP_013097273.1|2746251_2747043_+|aliphatic-sulfonate-ABC-transporter-permease-SsuC
MSLTTQKWLLRAAPWFLPVGIVLIWQLASSTGWLSNRILPSPEGVIEAFWSLSASGELWQHLAISSWRAVIGFSIGGSIGLTLGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGFALFINVLLPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQWLERSWLRWNPAYFSQEAKA
>NC_014121.1|WP_013097272.1|2745096_2746242_+|FMNH2-dependent-alkanesulfonate-monooxygenase
MSLNLFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRIGFTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRPSVVSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHTERYEASAEFTRVWRRLLEGETVTFDGKHIHVRDAKLYFPPVQQPRPPLYFGGSSDVAQDLAAEQVDLYLTWGEPPELVKEKIAQVQAKAAAHGRKVRFGIRLHVIVRETNEEAWQAADRLISHLDDETIAKAQAAFAKTDSVGQHRMASLHNGKRENLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYAELGIDSFILSGYPHLEEAYKVGELLFPHLDVAIPDIPQPRQLQLQGEAVANEFIPRKVAQS
>NC_014121.1|WP_013097271.1|2744137_2745100_+|sulfonate-ABC-transporter-substrate-binding-protein
MFKTLTRISLAGLLTLSSLTHAAETAPDSLRIGYQKGSVSMVLAKSHQLLEKRFPQTKFSWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVPENSAIKNVAELKGHKVAFQKGSSSHNLLLRALQEAGLKFTDIQPVYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTTLKQTGSFYLAARPYAEKNGAFVQDVLNTFTEADTLTQSQRPESITLLAKTMGLPEAVIASYLNHRPPTTIIPVDAHVAALQQQTADLFYQNRLVPKQVNIRERIWQPAAKEGAKS
>NC_014121.1|WP_013097270.1|2743569_2744145_+|NADPH-dependent-FMN-reductase
MRVITLAGSPRFPSRSSALLEYARERLNALDVEVCHWNLHNFEPEDLLYARFDSPALNTLIEQLKSADGLIVATPIYKASFSGALKTLLDLLPERALDGKVVLPLATGGTVAHLLAVDYALKPVLNALKAQEILHGVFADDSQVIDYQHKPHFTPNLQTRLDTALETFWHALHRRDIQAPAFGQPQGVAHV
>NC_014121.1|WP_013097269.1|2742309_2743320_-|quinone-dependent-dihydroorotate-dehydrogenase
MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPLAALVRQNVPEKPVQCMGLTFKNPLGLAAGLDKNGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVEAEGLINRMGFNNLGVDHLVENVKKAHFDGVLGINIGKNKDTPVEQGKDDYLICMEKVYAYAGYIAVNISSPNTPGLRSLQYGEALDDLLSAIKNKQNELQAIHHKYVPVAVKIAPDLSAEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDEAGGLSGRPVQLKSTEIIRALSAELKGRLPIIGVGGIDSVIAAREKMAAGASLVQIYSGFIFKGPPLIKEIVTHI
>NC_014121.1|WP_013097268.1|2741601_2742144_-|cell-division-protein-ZapC
MRIKPDDNWRWYFCEEHDRMMLDLANGMLFRSRFARRMLTPDAFSPSGFCVDDAALYFSFEEKCRDLLLSKEQRAELILNALVAIRFLKPQMPKSWHFLPHDMNWTPATGDAASVNLSDTAEEVSLLVVEPGENAALCLLAQPGVTIAGRTMQLGDAIKVMNDRLKPQLRVDSFSLEQAV
>NC_014121.1|WP_088581786.1|2753067_2754215_-|IS3-family-transposase
MSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAWIKKYGPDSSANKEQSDAQAEIRRLQKELKRVTDERDIFKKSRGVLRKAVRLRYAFIRDNTCCWPVRLLCRVLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDKRWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWRRNPQKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKSYGTREEARSDIFDYIEMFYNSKRRHGSSDQMSPTEYENQYYQRLGSV
>NC_014121.1|WP_072072180.1|2754259_2754442_-|transcriptional-regulator
MENELLSWRRASTKEEWHALAVKSGTSTGYLNLIAYGYRNASPKLATSIEAASRTESPRV
>NC_014121.1|WP_102135191.1|2754491_2755277_+|helix-turn-helix-transcriptional-regulator
MRQDKFIKLGIYHIAKKWEYLVMDIKNIRRQNLNRLIGEYIVEGYTKAQIAEKIGIPPSQLSQLSGSNASRNIGDIIARRIESSMGLPHGWMDSKRADVDASGTKPNFFINPLTKNQQQYRIEVMDTEFSCGSGRMNMDYPEIVKSIELDPEEAKRMFGGRSPTSLKICTVVGDSMLGTIFPGDLVVIDVTVNRLIGDGIYAFVYGDNFHIKRLQLLKDKLVVISDNSTYEKWFVSETDQSEFHIQGLVVGRWQMSYNRLG
>NC_014121.1|WP_044158727.1|2755452_2755884_+|helix-turn-helix-domain-containing-protein
MNTQITVAKTIGKRILNQRSSLRLSQDFLADHLGLTTETINNWETEKTVPFADQLIQLANILHSDVLWLISGNEQCGEFTEPTSIITSNQLNSWSADIGNCRMALSNAMDCMPPELSSIGTLTIVYEKLDDLQETICKQADKI
>NC_014121.1|WP_044158724.1|2755950_2756337_+|S24-family-peptidase
MQNSVAINQPIKTPQMLFGSDNINDFGNRVQSCRMEGYSMQPTIEPCEVVAFVDCGGHALTSGIYVYTMDAFGRPCLFIKRIEPLADGSLKIISDNHHYETFTLNTDEQKEIKIHGRVVASLAVRRFV
>NC_014121.1|WP_006811079.1|2756443_2756668_+|hypothetical-protein
MSLLKRQDIQVVNIKAEQLAGLSQTLFEYHDKLDHFQLKTICSLVYDIAGEIHDWTEKEEEIVMSLEEEARRNG
>NC_014121.1|WP_013097278.1|2756660_2757068_+|hypothetical-protein
MDKLIETYRRRILKAALLRHQRKTGSNCLVIKLNKGGINTVELTEILLDGLLRKFERLAISEYGNVEGVKAIKGIYSSAVDVNGSGEFLTDCGKELIDELISELVEFVKKQKVEAPKTEGHEMGGSDGTDSDTNS
>NC_014121.1|WP_013097279.1|2757257_2757671_+|hypothetical-protein
MNDKRTVSTIDLALQKHDTPVGPLFVAVRHGRIKKCFTRDTAIRYLAFFMTTEAFERSGFPQRHPRVRIDRDDMEVWRDGETKAEYLAAHQRCIRRLRRILARKREMEKWCEKWDAMHDRFIKEVDALQAIKPKGVY
>NC_014121.1|WP_013097280.1|2757670_2758249_+|hypothetical-protein
MIASAFTPEPTSTGIRFGNRVIGYSVAVRQLDNGNYDKRIPDGLDLLACIMEAIESGWFTPGIEKEIIIWRWMLVAVFITEEQAKNGTVEVANDSGGFDTAVIYSGQHGSISVYPAPERFALASHVEGLAIEKYGQELGQQMALRMYRDMLDTDAENGLQLSKMGREGFNLLHDSFIEQIQKEGMPDKPVMH
>NC_014121.1|WP_044158720.1|2758260_2759004_+|ORF6N-domain-containing-protein
MNTVTINNKQLPAVEYRGQRVVTFAMIDEAHQRPDGTAGRNFRENRNYFVEGVDYVELGSDAIRRDLPEGVFSKFAPSGIVLFESGYLMVAKSLTDDLAWQVQRELVNSYFRTRAPLTEIEMIAAMAADAVRQQKRLNHVEEQIETVTEAVENIKRGTMRAGYVGYRQVVAKSGMSDAKCRNLVNAYRIPTDTHEFMTPDGLLSRRAIVELEPFMAAFRQMMSEAEPRGTRWYHPKMGLFQAIGWEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014121_4	4.1\|2752572\|35\|NC_014121\|CRISPRCasFinder	2752572-2752606	35	MH178096	Aeromonas phage AsXd-1, complete genome	10852-10886	3	0.914
NC_014121_1	1.1\|423016\|31\|NC_014121\|CRT	423016-423046	31	LR135896	uncultured phage genomic DNA containing rbcL region region	68325-68355	5	0.839
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	49531-49560	6	0.8
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	436076-436105	6	0.8
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1386373-1386402	6	0.8
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	737346-737375	7	0.767
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	737376-737405	7	0.767
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	735787-735816	7	0.767
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	740034-740063	7	0.767
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	726935-726964	7	0.767
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	737376-737405	7	0.767
NC_014121_2	2.2\|835604\|30\|NC_014121\|CRISPRCasFinder	835604-835633	30	NZ_CP030129	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence	125951-125980	7	0.767
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	341179-341208	8	0.733
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	MF417874	Uncultured Caudovirales phage clone 3S_14, partial genome	5991-6020	9	0.7
NC_014121_2	2.1\|835550\|30\|NC_014121\|CRISPRCasFinder	835550-835579	30	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	707379-707408	9	0.7
NC_014121_2	2.2\|835604\|30\|NC_014121\|CRISPRCasFinder	835604-835633	30	MN228696	Sinorhizobium phage ort11, complete genome	49251-49280	9	0.7

1. spacer 4.1|2752572|35|NC_014121|CRISPRCasFinder matches to MH178096 (Aeromonas phage AsXd-1, complete genome) position: , mismatch: 3, identity: 0.914

tggggtgaatctcctgcaccaggtagtgaactatt	CRISPR spacer
cggggtgaatctgctgcaccaggtagtgaacgatt	Protospacer
.*********** ****************** ***

2. spacer 1.1|423016|31|NC_014121|CRT matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 5, identity: 0.839

aaaaaagcaccaaaaacatcccggaa-tcact	CRISPR spacer
agaaaagcacaaaaaacaacccggaagtcaa-	Protospacer
*.******** ******* ******* ***

3. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cagcgccgtcgccgtcatcatggccgccga	Protospacer
.* *.**********.***** *******

4. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cagcgccgtcgccgtcatcatggccgccga	Protospacer
.* *.**********.***** *******

5. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 6, identity: 0.8

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
tattgccaccgccgttaccattgccgccgc	Protospacer
**...**..********.************

6. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.*******

7. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.*******

8. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.*******

9. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.*******

10. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.*******

11. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 7, identity: 0.767

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
cgtctccgtcgccgtcatcatcgccgccgg	Protospacer
...* **********.*****.*******

12. spacer 2.2|835604|30|NC_014121|CRISPRCasFinder matches to NZ_CP030129 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

tgccattgtcattgttaccgccattatcag-	CRISPR spacer
ggccatggtcattgttgccgcca-tgtcgcc	Protospacer
 ***** *********.****** *.**.

13. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 8, identity: 0.733

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
ggtttcggtcgccgatatcatggccgccgc	Protospacer
 ... * ******* ****** ********

14. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to MF417874 (Uncultured Caudovirales phage clone 3S_14, partial genome) position: , mismatch: 9, identity: 0.7

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
gcccagcgtagccgttatcattgccaaacg	Protospacer
  *** *** ***************.

15. spacer 2.1|835550|30|NC_014121|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

taccaccgtcgccgttatcattgccgccgc	CRISPR spacer
aaagcccgtcgccgttatcatcgccgaaat	Protospacer
 *   ****************.****  ..

16. spacer 2.2|835604|30|NC_014121|CRISPRCasFinder matches to MN228696 (Sinorhizobium phage ort11, complete genome) position: , mismatch: 9, identity: 0.7

tgccattgtcattgttaccgccattatcag	CRISPR spacer
cctgtttgtcattgttattgccattatctc	Protospacer
. .  ************..*********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

472223 : 525014

uncultured_Caudovirales_phage(47.37%)

integrase,transposase

attL 500653:500708|attR 535483:535538

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099516394.1\|472223_473436_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.7e-100	57.8
WP_007372635.1\|473726_474236_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.5e-22	37.8
WP_007372636.1\|474308_474737_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.8e-49	70.7
WP_013095195.1\|474794_476084_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.3e-171	72.5
WP_013095196.1\|476124_477891_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_044158970.1\|477914_478280_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_013095198.1\|478302_478782_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.8e-34	51.3
WP_013095199.1\|478838_479192_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	47.2
WP_013095200.1\|479311_479494_+	hypothetical protein	NA	NA	NA	NA
WP_052768258.1\|479650_480160_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013095204.1\|480364_481366_+	permease	NA	NA	NA	NA
WP_013095205.1\|481379_481610_+	thioredoxin family protein	NA	NA	NA	NA
WP_013095206.1\|481720_481924_-	hypothetical protein	NA	NA	NA	NA
WP_007372648.1\|482005_482833_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	7.5e-52	39.9
WP_013095207.1\|482850_484329_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.2e-195	73.8
WP_007372650.1\|485081_485309_+	hypothetical protein	NA	NA	NA	NA
WP_001137910.1\|485594_485915_+	DUF134 domain-containing protein	NA	NA	NA	NA
WP_013095208.1\|485889_486351_+	hypothetical protein	NA	NA	NA	NA
WP_044158965.1\|487780_488218_+	PaaI family thioesterase	NA	NA	NA	NA
WP_013095212.1\|488331_488808_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	2.4e-18	32.4
WP_013095213.1\|489110_489461_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013095214.1\|489622_491281_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013095215.1\|491341_492499_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.3e-121	63.9
WP_013095218.1\|492946_493855_+	DHH family phosphoesterase	NA	NA	NA	NA
WP_013095219.1\|493851_494277_+	universal stress protein	NA	NA	NA	NA
WP_013095220.1\|494293_495583_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.5e-123	54.0
WP_044158961.1\|495664_496054_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	5.5e-29	58.0
WP_013095222.1\|496423_496843_+	universal stress protein	NA	NA	NA	NA
WP_044158959.1\|497105_498644_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
WP_013095225.1\|498640_500149_+	DNA mismatch repair protein MutS	A0A076FGT9	Aureococcus_anophage	1.2e-07	24.6
500653:500708	attL	NA	NA	NA	NA
WP_013087110.1\|500708_501677_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	6.1e-186	99.4
WP_077681925.1\|501698_502226_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_077270200.1\|502480_502945_-	hypothetical protein	NA	NA	NA	NA
WP_013095229.1\|505867_506752_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_099725561.1\|506825_507272_+	hypothetical protein	NA	NA	NA	NA
WP_013095231.1\|507558_507948_+	hypothetical protein	NA	NA	NA	NA
WP_013095232.1\|508030_508393_+	hypothetical protein	NA	NA	NA	NA
WP_013095233.1\|508516_508813_+	hypothetical protein	NA	NA	NA	NA
WP_099725666.1\|508896_509334_+	hypothetical protein	NA	NA	NA	NA
WP_013095235.1\|509443_510055_+	hypothetical protein	NA	NA	NA	NA
WP_013095236.1\|510127_511111_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	6.2e-53	38.9
WP_013095237.1\|511207_512158_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_013095238.1\|512284_512971_+	N-6 DNA methylase	A0A2K9V411	Faecalibacterium_phage	1.5e-29	37.6
WP_054442362.1\|513018_513432_-	hypothetical protein	NA	NA	NA	NA
WP_109455549.1\|513683_514891_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.8e-102	63.6
WP_109455548.1\|514966_515461_-	HNH endonuclease	E7EKU5	Edwardsiella_phage	1.8e-45	65.6
WP_164928065.1\|515488_516645_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_013095243.1\|516626_517451_-	hypothetical protein	NA	NA	NA	NA
WP_013095244.1\|517447_517927_-	macro domain-containing protein	NA	NA	NA	NA
WP_013095245.1\|517923_518577_-	hypothetical protein	NA	NA	NA	NA
WP_013095246.1\|518592_519129_-	hypothetical protein	NA	NA	NA	NA
WP_044158948.1\|519201_520419_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_099725667.1\|520504_521356_-	hypothetical protein	NA	NA	NA	NA
WP_013095250.1\|521668_522229_-	hypothetical protein	NA	NA	NA	NA
WP_086538577.1\|522433_524014_+	TraI domain-containing protein	NA	NA	NA	NA
WP_013095253.1\|524048_525014_+\|integrase	site-specific integrase	NA	NA	NA	NA
535483:535538	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1326594 : 1366738

Salmonella_phage(28.3%)

holin,lysis,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013095940.1\|1326594_1326921_-	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	3.9e-44	81.1
WP_013095941.1\|1326966_1327170_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	1.6e-24	76.1
WP_044158833.1\|1327147_1327486_-	DUF2591 family protein	R9VYJ6	Serratia_phage	1.1e-14	42.5
WP_164928057.1\|1327818_1328415_-	HNH endonuclease	A0A142IF90	Pseudomonas_phage	4.8e-24	42.3
WP_013095944.1\|1328404_1329046_-	DNA methyltransferase	G8C7S6	Escherichia_phage	7.2e-111	91.3
WP_013095946.1\|1329509_1330190_-	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	2.9e-126	94.2
WP_013095947.1\|1330186_1331032_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.6e-70	61.6
WP_013095948.1\|1331050_1331335_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.6e-49	96.8
WP_001752704.1\|1331413_1331620_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.6e-32	100.0
WP_013095950.1\|1331616_1331775_-	hypothetical protein	G8C7T3	Escherichia_phage	2.7e-19	86.5
WP_013095951.1\|1331771_1332128_-	hypothetical protein	NA	NA	NA	NA
WP_023330696.1\|1332292_1332523_-	hypothetical protein	NA	NA	NA	NA
WP_052429250.1\|1333135_1333411_-	hypothetical protein	NA	NA	NA	NA
WP_032656806.1\|1333442_1334147_-	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	1.5e-88	66.7
WP_013095954.1\|1334251_1334485_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.1e-21	67.6
WP_013095955.1\|1334514_1335060_+	hypothetical protein	K7P7P2	Enterobacteria_phage	6.2e-95	97.8
WP_013095956.1\|1335145_1335313_+	hypothetical protein	Q76H53	Enterobacteria_phage	2.1e-14	78.2
WP_013095957.1\|1335299_1336385_+	replication protein	E5AGE9	Erwinia_phage	3.0e-85	45.6
WP_013095958.1\|1336381_1337755_+	replicative DNA helicase	E5AGF0	Erwinia_phage	9.9e-166	63.5
WP_044159472.1\|1337759_1338059_+	hypothetical protein	M1FPD5	Enterobacteria_phage	2.2e-17	52.6
WP_013095961.1\|1338588_1338819_+	hypothetical protein	G8C7U9	Escherichia_phage	6.9e-32	92.1
WP_013095962.1\|1338815_1339373_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	1.6e-50	85.1
WP_006808975.1\|1340029_1340212_+	hypothetical protein	NA	NA	NA	NA
WP_013095964.1\|1340211_1340454_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	1.5e-37	96.2
WP_013095965.1\|1340456_1340678_+	hypothetical protein	G8C7V2	Escherichia_phage	6.4e-35	100.0
WP_013095966.1\|1340862_1341312_+	recombination protein NinB	I6R9D0	Salmonella_phage	7.2e-33	46.5
WP_013095967.1\|1341304_1341475_+	NinE family protein	K7P7K0	Enterobacteria_phage	4.2e-18	82.1
WP_013095968.1\|1341467_1342100_+	recombination protein NinG	S4TSR3	Salmonella_phage	6.5e-56	55.1
WP_013095969.1\|1342209_1342887_+	antitermination protein	I6PDF8	Cronobacter_phage	2.0e-55	51.6
WP_044158185.1\|1342883_1343369_+	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	2.3e-40	55.1
WP_013095970.1\|1343889_1344114_+\|holin	class II holin family protein	M9NZI9	Enterobacteria_phage	2.7e-33	94.6
WP_013095971.1\|1344091_1344586_+	lysozyme	M9P0E5	Enterobacteria_phage	1.9e-90	98.2
WP_013095972.1\|1344582_1345044_+\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	2.3e-58	77.8
WP_013095973.1\|1345293_1345821_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	2.3e-54	61.9
WP_013095974.1\|1345999_1346218_+	hypothetical protein	NA	NA	NA	NA
WP_013095975.1\|1346383_1347022_+	hypothetical protein	I6S676	Salmonella_phage	2.2e-115	93.4
WP_013095976.1\|1347054_1347513_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	3.3e-65	82.2
WP_044158824.1\|1347505_1348753_+\|terminase	terminase	I6RSK1	Salmonella_phage	1.0e-214	97.5
WP_013095979.1\|1349072_1350422_+	DUF1073 domain-containing protein	Q5G8Y4	Enterobacteria_phage	4.3e-214	82.0
WP_013095980.1\|1350381_1351308_+	hypothetical protein	Q5G8Y3	Enterobacteria_phage	7.1e-160	91.6
WP_044159460.1\|1351374_1352634_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	5.1e-217	90.7
WP_013095982.1\|1352646_1353096_+	hypothetical protein	H6WRT3	Salmonella_phage	9.3e-65	85.2
WP_013095983.1\|1353113_1354190_+	hypothetical protein	A0A1V0E5P6	Salmonella_phage	5.5e-188	90.8
WP_013095984.1\|1354199_1354493_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	2.7e-44	91.8
WP_013095985.1\|1354555_1354957_+	hypothetical protein	A0A1V0E5R0	Salmonella_phage	3.5e-55	80.8
WP_013095986.1\|1354956_1355130_+	hypothetical protein	I6R0P9	Salmonella_phage	3.9e-11	50.0
WP_013095987.1\|1355129_1355480_+	hypothetical protein	G0ZNE2	Cronobacter_phage	3.4e-38	66.1
WP_013095988.1\|1355494_1355683_+	hypothetical protein	NA	NA	NA	NA
WP_044158239.1\|1355725_1356094_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.7e-35	62.0
WP_044158236.1\|1356090_1356474_+	hypothetical protein	F1C5E4	Cronobacter_phage	4.4e-39	57.5
WP_044158234.1\|1356532_1357288_+	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	2.6e-51	48.2
WP_013095991.1\|1357338_1358082_+	hypothetical protein	G0ZNE7	Cronobacter_phage	2.9e-63	51.8
WP_013095992.1\|1358154_1358529_+	hypothetical protein	A0A0M4QWT0	Salmonella_phage	7.9e-25	46.8
WP_013095993.1\|1358586_1360887_+	tape measure protein	A0A1B1W284	Salmonella_phage	1.1e-97	40.2
WP_013095994.1\|1360886_1361384_+	hypothetical protein	F1C5F0	Cronobacter_phage	6.0e-89	90.9
WP_013095995.1\|1361383_1361854_+	hypothetical protein	F1C5F1	Cronobacter_phage	7.0e-79	92.9
WP_013095996.1\|1361867_1362233_+	C40 family peptidase	F1C5F2	Cronobacter_phage	2.2e-64	93.3
WP_013095997.1\|1362219_1364697_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.5
WP_013095998.1\|1364755_1366738_+	hypothetical protein	F1C5A8	Cronobacter_phage	2.7e-55	77.4

DBSCAN-SWA_3

1514737 : 1585398

Salmonella_phage(28.57%)

transposase,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013096140.1\|1514737_1515433_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_013096141.1\|1515470_1516052_+	Slp family lipoprotein	NA	NA	NA	NA
WP_013096142.1\|1516255_1517941_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	2.2e-34	25.8
WP_029882295.1\|1518012_1519140_+	ribonuclease D	NA	NA	NA	NA
WP_008500504.1\|1519213_1519483_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_013096144.1\|1519486_1520299_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_013096145.1\|1520322_1521030_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_013096146.1\|1521153_1521429_+	YcgL domain-containing protein	NA	NA	NA	NA
WP_013096147.1\|1521476_1522136_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_014832353.1\|1522228_1522669_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_028028084.1\|1522790_1523321_-	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_013096152.1\|1525108_1525828_+	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_013096153.1\|1525910_1527443_-	SpoVR family protein	NA	NA	NA	NA
WP_013096155.1\|1527763_1529062_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_013096156.1\|1529071_1530142_+	catabolic alanine racemase DadX	NA	NA	NA	NA
WP_013096157.1\|1530189_1531923_-	potassium/proton antiporter	NA	NA	NA	NA
WP_013096158.1\|1532020_1532935_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
WP_013096159.1\|1533031_1533643_+	membrane-bound lytic murein transglycosylase EmtA	NA	NA	NA	NA
WP_013096160.1\|1533681_1534413_-	flagellar brake protein	NA	NA	NA	NA
WP_013096161.1\|1534619_1534874_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_029882291.1\|1534987_1537090_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_013096163.1\|1537157_1538843_-	alpha,alpha-trehalase	NA	NA	NA	NA
WP_013096164.1\|1539208_1540567_+	MFS transporter	NA	NA	NA	NA
WP_013096165.1\|1540661_1542041_+	carbohydrate porin	NA	NA	NA	NA
WP_013096166.1\|1542054_1543011_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013096167.1\|1543126_1544314_+	MFS transporter	NA	NA	NA	NA
WP_013096168.1\|1544355_1545366_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_013096169.1\|1545444_1546425_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013096170.1\|1546589_1547561_+	fatty acid desaturase	NA	NA	NA	NA
WP_044158197.1\|1547553_1548345_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_013096172.1\|1548310_1550599_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_013096174.1\|1551461_1551956_+	hypothetical protein	NA	NA	NA	NA
WP_013096175.1\|1551979_1552483_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_013096176.1\|1552508_1553852_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_013096177.1\|1553869_1555108_+	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_013096178.1\|1555110_1558731_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_013096179.1\|1558747_1559464_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_013096180.1\|1559475_1560492_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_008502644.1\|1560567_1561092_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_013096181.1\|1561095_1562595_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_008502640.1\|1562930_1563413_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_013096182.1\|1563471_1563963_+	type VI secretion system amidase effector protein Tae4	NA	NA	NA	NA
WP_013096183.1\|1563959_1564313_+	hypothetical protein	NA	NA	NA	NA
WP_013096184.1\|1564400_1566170_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_013096185.1\|1566166_1566964_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_013096186.1\|1566980_1567967_+	hypothetical protein	NA	NA	NA	NA
WP_013096187.1\|1567976_1568789_+	type VI secretion system protein ImpE	NA	NA	NA	NA
WP_013096188.1\|1568781_1569345_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_038420938.1\|1569347_1571219_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_013096190.1\|1571215_1572259_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_013096191.1\|1572297_1574913_+	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.4e-80	31.3
WP_013096192.1\|1574937_1576371_+	serine/threonine protein kinase	M1HKB5	Acanthocystis_turfacea_Chlorella_virus	2.1e-09	27.8
WP_013096193.1\|1576407_1577826_+	hypothetical protein	NA	NA	NA	NA
WP_013096194.1\|1577822_1578584_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_164928058.1\|1578900_1579350_+	hypothetical protein	NA	NA	NA	NA
WP_013087110.1\|1579445_1580414_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	6.1e-186	99.4
WP_013096196.1\|1581562_1581910_+	hypothetical protein	NA	NA	NA	NA
WP_013096197.1\|1582006_1583935_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.4e-46	28.2
WP_082208141.1\|1583984_1584428_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	6.5e-18	60.8
WP_013087110.1\|1584429_1585398_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	6.1e-186	99.4

DBSCAN-SWA_4

1680991 : 1749519

Enterobacteria_phage(29.41%)

transposase,tail,integrase,holin,protease,terminase,portal

attL 1688838:1688855|attR 1719025:1719042

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013096290.1\|1680991_1682110_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21929	Phage_21	9.7e-79	45.0
WP_013096292.1\|1682408_1682651_-	DUF4060 family protein	NA	NA	NA	NA
WP_013096293.1\|1682637_1684539_-	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	6.6e-27	29.8
WP_013096295.1\|1684761_1685034_-	hypothetical protein	H6WRX2	Salmonella_phage	2.0e-14	48.1
WP_044158271.1\|1685492_1685789_+	hypothetical protein	NA	NA	NA	NA
WP_044158267.1\|1686184_1686580_-	hypothetical protein	NA	NA	NA	NA
WP_044158265.1\|1686674_1686932_+	helix-turn-helix domain-containing protein	K7PHA1	Enterobacteria_phage	3.3e-06	34.3
WP_013096297.1\|1686931_1687381_+	hypothetical protein	NA	NA	NA	NA
WP_013096299.1\|1688369_1689110_+	ATP-binding protein	H6WRX8	Salmonella_phage	8.7e-100	72.3
1688838:1688855	attL	NA	NA	NA	NA
WP_013096300.1\|1689127_1689784_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	4.6e-12	28.3
WP_013096301.1\|1689985_1690459_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.2e-67	78.8
WP_044158262.1\|1690462_1690810_+	hypothetical protein	NA	NA	NA	NA
WP_044158261.1\|1690996_1691320_+	hypothetical protein	K7PGV5	Enterobacterial_phage	4.1e-30	63.6
WP_044158259.1\|1691441_1691660_+	hypothetical protein	NA	NA	NA	NA
WP_013096305.1\|1691804_1692098_+	hypothetical protein	Q6V7S4	Burkholderia_virus	3.2e-21	57.0
WP_013096306.1\|1692090_1692447_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.1e-39	61.0
WP_013096307.1\|1692443_1693046_+	hypothetical protein	H9C175	Pectobacterium_phage	6.6e-74	65.3
WP_013096308.1\|1693383_1693632_+	hypothetical protein	I6PCV4	Cronobacter_phage	1.8e-30	85.4
WP_044158257.1\|1693635_1694466_+	hypothetical protein	I6PD67	Cronobacter_phage	1.3e-123	80.5
WP_044158255.1\|1694787_1694979_+	hypothetical protein	NA	NA	NA	NA
WP_013096310.1\|1695594_1695984_+\|holin	phage holin family protein	G8C7V8	Escherichia_phage	4.0e-64	100.0
WP_013096311.1\|1695973_1696252_+\|holin	phage holin family protein	G8C7V9	Escherichia_phage	2.1e-43	97.8
WP_044158253.1\|1696251_1696881_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.9e-108	92.8
WP_013096313.1\|1696888_1697164_+	hypothetical protein	K7PGW4	Enterobacterial_phage	1.1e-07	100.0
WP_131725267.1\|1697297_1697879_-	hypothetical protein	NA	NA	NA	NA
WP_013096315.1\|1697951_1699409_+	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	7.3e-268	89.5
WP_013096316.1\|1699420_1699756_+	hypothetical protein	NA	NA	NA	NA
WP_013096317.1\|1699709_1699967_-	hypothetical protein	K7P7V5	Enterobacteria_phage	3.2e-33	96.3
WP_044158251.1\|1700671_1701160_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	3.7e-75	92.0
WP_013096319.1\|1701159_1703262_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	97.7
WP_013096320.1\|1703258_1703474_+	hypothetical protein	K7PMB5	Enterobacterial_phage	1.6e-30	95.8
WP_013096321.1\|1703470_1704970_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.7e-286	99.0
WP_044158249.1\|1705449_1706685_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.7e-100	43.2
WP_044158246.1\|1706686_1706911_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_013096324.1\|1706976_1708326_-	hypothetical protein	A0A1W6JNS5	Morganella_phage	9.5e-230	85.7
WP_014883655.1\|1708349_1708544_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_072072172.1\|1708676_1708964_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_013096325.1\|1708956_1709136_+	hypothetical protein	NA	NA	NA	NA
WP_013096326.1\|1709140_1709464_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_013096327.1\|1709460_1710870_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.1e-135	70.5
WP_013096329.1\|1711325_1711814_+	hypothetical protein	NA	NA	NA	NA
WP_044158243.1\|1712313_1712526_+	hypothetical protein	NA	NA	NA	NA
WP_013096330.1\|1712522_1714439_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	1.3e-216	58.5
WP_072072171.1\|1714591_1714843_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.9e-06	44.8
WP_087776199.1\|1714930_1716138_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.6e-101	62.7
WP_044158375.1\|1716201_1716774_+\|tail	tail assembly protein	K7P6V1	Enterobacteria_phage	9.1e-73	78.3
WP_044158372.1\|1716824_1717478_-	hypothetical protein	NA	NA	NA	NA
WP_013096334.1\|1719343_1719670_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	4.4e-48	92.5
1719025:1719042	attR	NA	NA	NA	NA
WP_044067056.1\|1719662_1719938_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	5.2e-26	63.7
WP_013096336.1\|1719946_1720501_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	3.5e-69	84.7
WP_013096337.1\|1720497_1720896_+\|tail	tail protein	S5MW30	Escherichia_phage	2.5e-45	64.4
WP_013096338.1\|1720903_1721641_+\|tail	phage tail protein	O64327	Escherichia_phage	2.7e-130	98.8
WP_013096339.1\|1721679_1722102_+\|tail	phage minor tail protein G	K7P7M5	Enterobacteria_phage	9.1e-54	97.1
WP_013096340.1\|1722110_1722431_+\|tail	phage tail assembly protein T	K7P6V0	Enterobacteria_phage	1.4e-54	97.2
WP_013096341.1\|1722408_1724925_+\|tail	phage tail tape measure protein	K7P7A9	Enterobacteria_phage	0.0e+00	99.2
WP_013096342.1\|1724930_1725278_+\|tail	phage tail protein	K7P7G7	Enterobacteria_phage	1.4e-60	99.1
WP_000055651.1\|1725274_1726030_+\|tail	phage minor tail protein L	K7P6G9	Enterobacteria_phage	3.9e-148	99.6
WP_013096343.1\|1726031_1726763_+	C40 family peptidase	K7P7M8	Enterobacteria_phage	4.0e-150	99.6
WP_044158363.1\|1726750_1727338_+\|tail	tail assembly protein	K7P6V1	Enterobacteria_phage	2.2e-98	99.5
WP_013096345.1\|1727391_1731219_+\|tail	phage tail protein	K7PKR4	Enterobacteria_phage	0.0e+00	79.3
WP_013096346.1\|1731220_1732186_+	hypothetical protein	G1CSU0	Cronobacter_virus	3.6e-61	40.6
WP_013096348.1\|1733177_1733453_+	hypothetical protein	NA	NA	NA	NA
WP_077681905.1\|1733439_1734012_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_044159385.1\|1734136_1734685_+	recombinase family protein	A0A1S6L009	Salmonella_phage	6.4e-76	80.0
WP_123906383.1\|1735043_1735469_+	hypothetical protein	K7P834	Enterobacteria_phage	2.4e-25	47.2
WP_013096351.1\|1735555_1735795_-	DinI family protein	K7PKM2	Enterobacterial_phage	2.2e-33	89.9
WP_013096355.1\|1737554_1738364_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_013096356.1\|1738363_1739557_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_013096357.1\|1739567_1740926_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	9.5e-36	39.9
WP_013096358.1\|1740929_1742525_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	8.5e-52	37.3
WP_106993556.1\|1744181_1744226_-	trp operon leader peptide	NA	NA	NA	NA
WP_013096361.1\|1744365_1745247_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_013096362.1\|1745243_1745864_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_013096363.1\|1745960_1746836_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_013096364.1\|1746872_1747463_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_013096365.1\|1747459_1748221_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	2.3e-07	22.5
WP_013096366.1\|1748472_1749519_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	6.2e-19	28.7

DBSCAN-SWA_5

2232431 : 2240986

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013096791.1\|2232431_2233646_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	8.2e-47	29.2
WP_013096792.1\|2233757_2234084_-	YnfA family protein	A0A218MNG8	uncultured_virus	4.2e-22	55.6
WP_013096793.1\|2234237_2234576_+	DUF1283 family protein	NA	NA	NA	NA
WP_013096794.1\|2234575_2235133_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_077681884.1\|2235150_2235861_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_013096796.1\|2235966_2236260_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_013096797.1\|2236406_2238845_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	9.8e-217	49.4
WP_013096798.1\|2238855_2239473_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_013096799.1\|2239474_2240329_+	dimethyl sulfoxide reductase anchor subunit family protein	A0A077SK59	Escherichia_phage	6.2e-25	36.1
WP_013096800.1\|2240371_2240986_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.1e-30	37.3

DBSCAN-SWA_6

2747861 : 2765570

Salmonella_phage(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013097275.1\|2747861_2750474_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.4e-19	22.4
WP_013097276.1\|2750899_2751139_+	DinI family protein	K7PKM2	Enterobacterial_phage	6.5e-33	89.9
WP_087451024.1\|2751241_2752361_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_088581786.1\|2753067_2754215_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.0e-147	92.6
WP_072072180.1\|2754259_2754442_-	transcriptional regulator	NA	NA	NA	NA
WP_102135191.1\|2754491_2755277_+	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	3.9e-34	35.6
WP_044158727.1\|2755452_2755884_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_044158724.1\|2755950_2756337_+	S24 family peptidase	F1C5A0	Cronobacter_phage	4.9e-38	60.0
WP_006811079.1\|2756443_2756668_+	hypothetical protein	NA	NA	NA	NA
WP_013097278.1\|2756660_2757068_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	4.7e-47	86.6
WP_013097279.1\|2757257_2757671_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.1e-46	64.7
WP_013097280.1\|2757670_2758249_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	9.8e-75	68.2
WP_044158720.1\|2758260_2759004_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	3.4e-120	86.2
WP_044158718.1\|2759006_2759378_+	hypothetical protein	NA	NA	NA	NA
WP_013097283.1\|2759361_2759619_+	excisionase family protein	S4TND0	Salmonella_phage	1.8e-36	90.0
WP_013097284.1\|2759663_2760956_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	6.1e-242	95.6
WP_013097285.1\|2761140_2762343_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	3.8e-44	31.6
WP_029882977.1\|2762508_2763909_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.1e-79	36.2
WP_164928068.1\|2764517_2765570_+	porin OmpF	Q1MVN1	Enterobacteria_phage	3.0e-90	50.3

DBSCAN-SWA_7

2829866 : 2915086

Cronobacter_phage(56.82%)

transposase,tail,holin,integrase,head,plate,terminase,capsid,portal

attL 2881405:2881426|attR 2912885:2912906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088581786.1\|2829866_2831014_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.0e-147	92.6
WP_013097330.1\|2831208_2831904_+	aquaporin Z	NA	NA	NA	NA
WP_013097331.1\|2832061_2832961_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_013097332.1\|2833104_2834757_+	hydroxylamine reductase	NA	NA	NA	NA
WP_013097333.1\|2834767_2835736_+	NADH oxidoreductase	NA	NA	NA	NA
WP_013097334.1\|2835833_2836268_-	DoxX family protein	NA	NA	NA	NA
WP_013097335.1\|2836420_2838139_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.3e-31	24.2
WP_013097336.1\|2838177_2839179_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_013097337.1\|2839189_2840626_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013097338.1\|2840718_2841732_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013097339.1\|2841828_2843670_-	chitinase	NA	NA	NA	NA
WP_013097340.1\|2843806_2844259_-	type III secretion system invasion protein IagB	NA	NA	NA	NA
WP_013097341.1\|2844396_2847120_-	glycoside hydrolase	B0FDP2	Orgyia_leucostigma_nucleopolyhedrovirus	2.3e-190	60.1
WP_013097342.1\|2847383_2848181_-	prepilin peptidase	NA	NA	NA	NA
WP_013097343.1\|2848177_2848663_-	type II secretion system protein M	NA	NA	NA	NA
WP_013097344.1\|2848659_2849790_-	general secretion pathway protein GspL	NA	NA	NA	NA
WP_013097345.1\|2849805_2850822_-	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_013097346.1\|2850818_2851490_-	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA
WP_013097347.1\|2851486_2851861_-	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_013097348.1\|2851853_2852339_-	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_013097349.1\|2852338_2852788_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_013097350.1\|2852790_2853999_-	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_013097351.1\|2853998_2855477_-	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_013097352.1\|2855490_2857419_-	type II secretion system secretin GspD	NA	NA	NA	NA
WP_040022860.1\|2857431_2858163_-	type II secretion system protein GspC	NA	NA	NA	NA
WP_013097356.1\|2860015_2860642_+	hypothetical protein	NA	NA	NA	NA
WP_013097357.1\|2860638_2861262_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013097358.1\|2861525_2862356_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	3.7e-06	30.0
WP_006174327.1\|2862352_2862676_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_013097359.1\|2862783_2863302_+	lipoprotein	NA	NA	NA	NA
WP_013097360.1\|2863528_2864257_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.6e-29	37.1
WP_013097361.1\|2864277_2865009_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013097362.1\|2865015_2865732_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_013097363.1\|2865731_2866400_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_013097364.1\|2866555_2867287_+	ABC transporter substrate-binding protein ArtJ	NA	NA	NA	NA
WP_044158735.1\|2867373_2868843_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	2.4e-24	29.7
WP_013097367.1\|2869638_2870778_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	2.3e-27	27.3
WP_013097368.1\|2870818_2871292_-	YbjO family protein	NA	NA	NA	NA
WP_013097369.1\|2871357_2872203_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_013097370.1\|2872199_2873153_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_013097371.1\|2873163_2874297_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	6.5e-30	34.4
WP_013097372.1\|2874440_2875553_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_003858385.1\|2875904_2876381_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_013097373.1\|2876444_2877347_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	1.1e-37	33.6
WP_013097374.1\|2877398_2878121_-	nitroreductase NfsA	NA	NA	NA	NA
WP_006809455.1\|2878305_2878575_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	7.9e-27	71.8
WP_013097375.1\|2878921_2879305_-	inner membrane protein YbjM	NA	NA	NA	NA
WP_013097376.1\|2879575_2881261_+	aspartate:alanine antiporter	NA	NA	NA	NA
2881405:2881426	attL	NA	NA	NA	NA
WP_013097377.1\|2881515_2882634_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_164928060.1\|2882938_2883316_-	hypothetical protein	NA	NA	NA	NA
WP_013097379.1\|2883354_2885031_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.4e-206	63.7
WP_013097380.1\|2885033_2885582_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.1e-62	72.9
WP_013097381.1\|2885553_2886279_-	hypothetical protein	F1BUK1	Cronobacter_phage	4.5e-61	50.2
WP_044158745.1\|2886268_2886700_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	1.3e-23	46.0
WP_085929673.1\|2887079_2888247_+\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_013097383.1\|2888253_2890236_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	6.2e-153	81.5
WP_013097384.1\|2890245_2890833_-	hypothetical protein	F1BUK5	Cronobacter_phage	8.4e-90	79.5
WP_013097385.1\|2890825_2892010_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	2.0e-175	78.8
WP_013097386.1\|2892006_2892336_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	1.3e-36	70.6
WP_013097388.1\|2894829_2895090_-\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	2.1e-21	62.8
WP_013097389.1\|2895209_2895578_-	hypothetical protein	F1BUL2	Cronobacter_phage	1.8e-21	52.4
WP_013097390.1\|2895577_2895919_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	1.1e-49	90.1
WP_013097391.1\|2895915_2896212_-\|holin	phage holin family protein	S4TP56	Salmonella_phage	9.9e-15	46.9
WP_013097392.1\|2896221_2896677_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	3.5e-59	72.2
WP_013097393.1\|2896673_2897801_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	2.5e-175	82.9
WP_013097394.1\|2897797_2898505_-	hypothetical protein	F1BUL6	Cronobacter_phage	1.0e-102	78.6
WP_013097395.1\|2898501_2899008_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.6e-66	70.3
WP_013097396.1\|2899004_2899457_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.9e-57	76.7
WP_013097397.1\|2899555_2900257_-\|terminase	terminase	F1BUM0	Cronobacter_phage	4.4e-85	66.8
WP_013097398.1\|2900260_2901283_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	9.3e-153	79.4
WP_013097399.1\|2901342_2902137_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	2.2e-69	55.6
WP_013097400.1\|2902309_2904085_+	hypothetical protein	F1BUM5	Cronobacter_phage	5.4e-289	82.4
WP_013097401.1\|2904137_2905133_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.7e-157	81.0
WP_044158755.1\|2905129_2905453_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	7.4e-48	89.4
WP_013097403.1\|2905426_2905639_-	hypothetical protein	NA	NA	NA	NA
WP_131725270.1\|2905758_2907774_-	replication endonuclease	F1BUM9	Cronobacter_phage	3.3e-303	75.4
WP_013097405.1\|2907775_2907988_-	hypothetical protein	NA	NA	NA	NA
WP_013097406.1\|2907984_2908851_-	DNA adenine methylase	F1BUN1	Cronobacter_phage	7.2e-146	93.2
WP_013097407.1\|2908841_2909075_-	DUF2732 family protein	NA	NA	NA	NA
WP_013097408.1\|2909141_2909543_-	hypothetical protein	F1BUN2	Cronobacter_phage	6.0e-39	54.1
WP_013097409.1\|2909542_2909971_-	hypothetical protein	F1BUN5	Cronobacter_phage	5.8e-24	49.2
WP_013097410.1\|2909960_2910155_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_013097411.1\|2910164_2910668_-	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	1.9e-58	70.7
WP_013097412.1\|2910700_2910922_-	hypothetical protein	NA	NA	NA	NA
WP_044158758.1\|2911058_2911679_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	5.0e-32	37.8
WP_013097414.1\|2911757_2912807_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.1e-103	54.6
WP_044158760.1\|2912996_2913317_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	9.1e-22	54.9
2912885:2912906	attR	NA	NA	NA	NA
WP_013097417.1\|2913352_2914642_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.1e-169	71.4
WP_013097418.1\|2914654_2915086_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.4e-49	67.1

DBSCAN-SWA_8

3242751 : 3278289

Cronobacter_phage(30.0%)

transposase,tail,holin,lysis,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013097701.1\|3242751_3243582_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_032652866.1\|3244243_3244633_-	DNA polymerase V	K7P6F7	Enterobacteria_phage	6.4e-46	65.6
WP_032652865.1\|3244745_3245108_+	GtrA family protein	U5P0S6	Shigella_phage	3.7e-48	81.7
WP_013097703.1\|3245104_3246025_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	7.6e-154	86.8
WP_013097704.1\|3246021_3247521_+	glucosyltransferase domain-containing protein	A0A192Y7W8	Salmonella_phage	3.2e-24	24.7
WP_013097705.1\|3247549_3249523_-	hypothetical protein	F1C5A8	Cronobacter_phage	3.9e-54	75.9
WP_044158819.1\|3249581_3252059_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.2
WP_013097707.1\|3252045_3252438_-	C40 family peptidase	F1C5F2	Cronobacter_phage	9.6e-66	89.5
WP_013097708.1\|3252447_3252918_-	hypothetical protein	F1C5F1	Cronobacter_phage	3.1e-79	92.9
WP_013097709.1\|3252917_3253415_-	hypothetical protein	F1C5F0	Cronobacter_phage	4.6e-89	90.9
WP_013097710.1\|3253414_3256864_-	tape measure protein	R9TMK1	Aeromonas_phage	2.7e-236	57.4
WP_013097711.1\|3256922_3257606_-	hypothetical protein	F1C5E8	Cronobacter_phage	1.3e-78	61.1
WP_013097712.1\|3257665_3258409_-	Ig-like domain-containing protein	F1C5E5	Cronobacter_phage	6.3e-74	85.3
WP_013097713.1\|3258472_3258856_-	hypothetical protein	F1C5E4	Cronobacter_phage	4.4e-39	61.4
WP_044158821.1\|3258852_3259221_-	hypothetical protein	F1C5E3	Cronobacter_phage	9.4e-39	63.9
WP_013097714.1\|3259223_3259583_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.7e-37	65.8
WP_013097716.1\|3259734_3259905_-	hypothetical protein	I6R0P9	Salmonella_phage	3.8e-11	48.2
WP_013097717.1\|3259904_3260306_-	hypothetical protein	G0ZNE1	Cronobacter_phage	3.5e-55	78.9
WP_013097718.1\|3260368_3260662_-	hypothetical protein	A0A1V0E5P8	Salmonella_phage	2.2e-43	90.7
WP_013095983.1\|3260671_3261748_-	hypothetical protein	A0A1V0E5P6	Salmonella_phage	5.5e-188	90.8
WP_013095982.1\|3261765_3262215_-	hypothetical protein	H6WRT3	Salmonella_phage	9.3e-65	85.2
WP_044159460.1\|3262227_3263487_-	hypothetical protein	Q5G8Y2	Enterobacteria_phage	5.1e-217	90.7
WP_013095980.1\|3263553_3264480_-	hypothetical protein	Q5G8Y3	Enterobacteria_phage	7.1e-160	91.6
WP_013095979.1\|3264439_3265789_-	DUF1073 domain-containing protein	Q5G8Y4	Enterobacteria_phage	4.3e-214	82.0
WP_044158824.1\|3266108_3267356_-\|terminase	terminase	I6RSK1	Salmonella_phage	1.0e-214	97.5
WP_013095976.1\|3267348_3267807_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	3.3e-65	82.2
WP_013097719.1\|3267838_3268477_-	hypothetical protein	I6S676	Salmonella_phage	2.4e-114	92.0
WP_013097720.1\|3268480_3268699_-	hypothetical protein	NA	NA	NA	NA
WP_025759831.1\|3268800_3269250_-	hypothetical protein	NA	NA	NA	NA
WP_013097722.1\|3269714_3269999_-	hypothetical protein	G8C7W3	Escherichia_phage	1.9e-26	67.0
WP_013097723.1\|3270008_3270473_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	2.6e-46	66.7
WP_013095971.1\|3270469_3270964_-	lysozyme	M9P0E5	Enterobacteria_phage	1.9e-90	98.2
WP_013095970.1\|3270941_3271166_-\|holin	class II holin family protein	M9NZI9	Enterobacteria_phage	2.7e-33	94.6
WP_087776199.1\|3271927_3273134_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.6e-101	62.7
WP_164928062.1\|3273126_3273513_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	1.1e-26	53.4
WP_013097724.1\|3273509_3274187_-	antitermination protein	I6PDF8	Cronobacter_phage	2.9e-54	51.1
WP_088567025.1\|3274183_3274300_-	hypothetical protein	NA	NA	NA	NA
WP_044158181.1\|3274296_3274476_-	hypothetical protein	NA	NA	NA	NA
WP_013097725.1\|3274472_3275117_-	recombination protein NinG	S4TSR3	Salmonella_phage	3.9e-72	68.2
WP_072072169.1\|3275109_3275280_-	NinE family protein	G8C7V4	Escherichia_phage	2.2e-19	86.8
WP_013097726.1\|3275276_3275714_-	recombination protein NinB	G8C7V3	Escherichia_phage	1.6e-53	69.0
WP_072072168.1\|3275892_3276072_-	hypothetical protein	NA	NA	NA	NA
WP_013097727.1\|3276068_3276317_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	5.9e-37	95.0
WP_131725278.1\|3276386_3276635_-	hypothetical protein	A0A1I9KF90	Aeromonas_phage	3.5e-13	46.7
WP_013097728.1\|3276631_3277036_-	hypothetical protein	A0A248SKW5	Klebsiella_phage	1.0e-06	47.2
WP_085929673.1\|3277120_3278289_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1

DBSCAN-SWA_9

3402830 : 3410583

Bodo_saltans_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000954830.1\|3402830_3403442_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	6.0e-14	29.3
WP_013097848.1\|3403481_3404462_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_013097849.1\|3404654_3405659_+	NAD-dependent epimerase	A0A2K9L4U8	Tupanvirus	7.8e-35	30.7
WP_013097850.1\|3405710_3406877_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	2.7e-111	54.0
WP_013097851.1\|3407117_3407999_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.9e-104	63.1
WP_013097852.1\|3407995_3409084_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	5.0e-96	52.0
WP_000043519.1\|3409176_3410583_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.0e-37	28.3

DBSCAN-SWA_10

3614052 : 3623135

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013098011.1\|3614052_3616338_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2D1GNB1	Pseudoalteromonas_phage	6.0e-285	64.0
WP_013098012.1\|3616445_3617576_+	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	6.0e-177	79.4
WP_013098013.1\|3617575_3617830_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	5.1e-28	67.9
WP_109455534.1\|3617997_3619641_+	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0S9J5	Catovirus	1.7e-23	30.6
WP_044157966.1\|3619534_3621091_+	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0SI18	Klosneuvirus	2.2e-36	28.0
WP_013098016.1\|3621122_3622052_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013098017.1\|3622076_3623135_-	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	7.7e-09	50.9

DBSCAN-SWA_11

3638223 : 3682485

Enterobacteria_phage(22.03%)

transposase,holin,integrase,lysis,capsid,plate,terminase

attL 3632829:3632845|attR 3682595:3682611

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3632829:3632845	attL	NA	NA	NA	NA
WP_013098030.1\|3638223_3639246_-	hypothetical protein	K4HZC0	Acinetobacter_phage	5.5e-12	37.7
WP_013098031.1\|3639247_3639835_-	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	8.3e-37	44.2
WP_013098032.1\|3639831_3641064_-\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	1.7e-108	51.6
WP_044157974.1\|3641072_3641429_-	hypothetical protein	NA	NA	NA	NA
WP_013098033.1\|3641465_3642173_-	oxidoreductase	A0A077KAY0	Edwardsiella_phage	2.7e-34	38.5
WP_013098034.1\|3642173_3643034_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	2.2e-38	32.4
WP_013098035.1\|3643023_3643335_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	1.8e-19	44.4
WP_109455533.1\|3643334_3643991_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	6.6e-27	47.1
WP_013098037.1\|3644134_3645904_-	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.7e-48	40.7
WP_013098038.1\|3645903_3646101_-	hypothetical protein	NA	NA	NA	NA
WP_013098039.1\|3646115_3646520_-	hypothetical protein	H9C0W7	Aeromonas_phage	8.5e-17	47.2
WP_013098040.1\|3646528_3646870_-	hypothetical protein	NA	NA	NA	NA
WP_013098041.1\|3646969_3648448_-	DUF3383 domain-containing protein	A6N3B0	Burkholderia_virus	2.5e-74	37.5
WP_044159291.1\|3648448_3648940_-	hypothetical protein	A0A077KC88	Edwardsiella_phage	2.9e-11	28.6
WP_044157976.1\|3648996_3649365_-	hypothetical protein	A0A077KAW7	Edwardsiella_phage	9.8e-28	48.8
WP_044157978.1\|3649361_3649814_-	hypothetical protein	A0A077KC03	Edwardsiella_phage	2.1e-24	45.3
WP_044157982.1\|3649816_3650260_-	DUF4054 domain-containing protein	K4HYQ8	Acinetobacter_phage	5.3e-12	36.4
WP_013098045.1\|3650262_3650589_-	hypothetical protein	NA	NA	NA	NA
WP_013098046.1\|3650592_3651627_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	1.1e-87	51.4
WP_044157985.1\|3651626_3652109_-	hypothetical protein	A0A077KAW3	Edwardsiella_phage	1.8e-37	54.1
WP_044157986.1\|3652110_3653298_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	1.3e-57	35.7
WP_044159293.1\|3653310_3654000_-\|capsid	minor capsid protein	H9C0V1	Aeromonas_phage	1.3e-65	53.5
WP_013098050.1\|3654058_3655585_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.5e-101	44.8
WP_013098051.1\|3655585_3657244_-\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	5.2e-246	74.7
WP_013098052.1\|3657245_3657722_-\|terminase	phage terminase small subunit	C7U0W1	Enterobacteria_phage	3.2e-55	73.3
WP_044157989.1\|3657724_3657922_-	hypothetical protein	NA	NA	NA	NA
WP_007851400.1\|3657923_3658085_-	hypothetical protein	NA	NA	NA	NA
WP_013098054.1\|3658084_3658294_-	hypothetical protein	K4I3A7	Salmonella_phage	2.2e-08	66.0
WP_013098055.1\|3658587_3658875_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	1.7e-32	67.4
WP_013098056.1\|3658911_3659370_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	6.6e-42	60.5
WP_044159299.1\|3659366_3659855_-	lysozyme	A0A2H4FND7	Salmonella_phage	1.5e-79	88.9
WP_044157993.1\|3659832_3660036_-\|holin	phage holin family protein	I6R0S9	Salmonella_phage	3.4e-30	89.6
WP_013098059.1\|3660486_3661251_-	antitermination protein	Q5G8R6	Enterobacteria_phage	1.8e-137	93.7
WP_044157995.1\|3661247_3661670_-	HNH endonuclease	C6ZR29	Salmonella_phage	1.1e-51	68.8
WP_013098060.1\|3661666_3661852_-	hypothetical protein	NA	NA	NA	NA
WP_060568999.1\|3661839_3662037_-	protein ninH	A0A1R3Y5V4	Salmonella_virus	8.3e-18	68.3
WP_044158000.1\|3662113_3662356_-	hypothetical protein	A0A1V0E5R3	Salmonella_phage	6.8e-30	77.5
WP_044158002.1\|3662352_3662718_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	1.2e-46	77.5
WP_044158004.1\|3662714_3663005_-	DUF1364 domain-containing protein	K7P6U2	Enterobacteria_phage	1.0e-43	85.3
WP_044158005.1\|3662997_3663174_-	NinF family protein	NA	NA	NA	NA
WP_013098061.1\|3663166_3663535_-	DUF2591 family protein	A0A1J0GWC2	Alteromonas_phage	2.7e-17	42.1
WP_044158007.1\|3663536_3663764_-	hypothetical protein	NA	NA	NA	NA
WP_013098063.1\|3664133_3664544_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	1.8e-62	86.0
WP_044158012.1\|3664515_3664875_-	hypothetical protein	A0A193H1Z1	Shigella_phage	1.6e-22	47.0
WP_044158013.1\|3664877_3665129_-	hypothetical protein	A0A220NQX3	Salmonella_phage	6.5e-07	41.7
WP_013098064.1\|3665140_3665350_-	hypothetical protein	NA	NA	NA	NA
WP_044158017.1\|3665375_3665777_-	DUF2591 family protein	A0A1J0GUX1	Halomonas_phage	2.0e-05	35.1
WP_085929673.1\|3665810_3666979_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1
WP_013098065.1\|3666947_3667478_-	transcriptional regulator	NA	NA	NA	NA
WP_013098066.1\|3667481_3668816_-	DNA helicase	A0A2I7R8E4	Vibrio_phage	1.9e-76	37.6
WP_013098067.1\|3668815_3669715_-	replication protein	A0A1I9KG10	Aeromonas_phage	6.3e-28	43.4
WP_013098068.1\|3669701_3669860_-	hypothetical protein	Q76H53	Enterobacteria_phage	4.3e-17	86.3
WP_023972039.1\|3669904_3670195_-	hypothetical protein	I6RSP4	Salmonella_phage	1.9e-39	86.5
WP_013098070.1\|3670305_3670503_-	hypothetical protein	A4KWT7	Enterobacteria_phage	1.3e-23	85.7
WP_044158020.1\|3670603_3671317_+	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	1.2e-106	78.9
WP_013098071.1\|3671695_3672166_+	glycine zipper family protein	NA	NA	NA	NA
WP_013098072.1\|3672198_3672408_-	hypothetical protein	G8C7T7	Escherichia_phage	1.7e-16	67.2
WP_013098074.1\|3674233_3674599_+	antitermination protein	C6ZR44	Salmonella_phage	5.5e-47	80.2
WP_044157947.1\|3674602_3674905_+	hypothetical protein	NA	NA	NA	NA
WP_044157944.1\|3674950_3675145_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.2e-05	42.3
WP_044157941.1\|3675294_3675681_+	hypothetical protein	NA	NA	NA	NA
WP_013098076.1\|3675766_3675898_+	hypothetical protein	K7PHK2	Enterobacteria_phage	1.3e-06	65.0
WP_013098077.1\|3675882_3676029_+	host cell division inhibitory peptide Kil	K7PM80	Enterobacteria_phage	3.9e-12	69.8
WP_013098078.1\|3676104_3676275_+	hypothetical protein	A5VWA7	Enterobacteria_phage	2.0e-15	75.0
WP_013098079.1\|3676287_3677160_+	ATP-binding protein	A0A1B1P9H8	Acinetobacter_phage	8.7e-59	56.0
WP_044157939.1\|3677160_3677610_+	single-stranded DNA-binding protein	A0A220NRQ8	Escherichia_phage	2.7e-56	75.6
WP_013098081.1\|3677685_3678030_+	hypothetical protein	NA	NA	NA	NA
WP_013098082.1\|3678209_3678695_+	hypothetical protein	A0A0F6N6A6	Escherichia_phage	9.5e-31	66.4
WP_013098083.1\|3678691_3679168_+	ead/Ea22-like family protein	A0A0K2FJF6	Enterobacteria_phage	2.3e-37	50.6
WP_013098084.1\|3679164_3679764_+	DUF551 domain-containing protein	G8C7V0	Escherichia_phage	1.0e-29	65.8
WP_044157936.1\|3679979_3680180_+	hypothetical protein	G8C7S1	Escherichia_phage	1.8e-20	68.2
WP_013098086.1\|3680192_3680807_+	DUF5420 family protein	A0A220NQT7	Salmonella_phage	4.0e-82	69.7
WP_165444164.1\|3680842_3680995_+	hypothetical protein	W6B279	Escherichia_phage	2.3e-07	63.6
WP_071990016.1\|3681077_3681275_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_013098087.1\|3681243_3682485_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	4.0e-73	39.5
3682595:3682611	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4510315 : 4551234

Salmonella_phage(80.49%)

tail,integrase,lysis,protease,head,plate,terminase,capsid,tRNA,portal

attL 4519470:4519485|attR 4551274:4551289

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013098773.1\|4510315_4512310_-\|protease	serine protease	Q2A0D0	Sodalis_phage	3.1e-19	24.8
WP_029883055.1\|4512658_4513339_+	response regulator transcription factor	NA	NA	NA	NA
WP_013098775.1\|4513370_4514384_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.2e-109	58.6
WP_001144069.1\|4514620_4514836_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_013098776.1\|4514952_4516698_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.9e-77	39.2
WP_013098777.1\|4516863_4518711_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_013098778.1\|4518820_4519315_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
4519470:4519485	attL	NA	NA	NA	NA
WP_024146528.1\|4519652_4519871_-	DNA-binding transcriptional regulator	Q53ZE7	Salmonella_virus	4.9e-27	75.0
WP_013098779.1\|4519940_4521041_-	phage late control D family protein	E5G6Q3	Salmonella_phage	7.6e-185	92.1
WP_013098780.1\|4521037_4521523_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-72	94.4
WP_054442331.1\|4521519_4525056_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	62.2
WP_007848878.1\|4525048_4525168_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	3.3e-14	92.3
WP_007848877.1\|4525182_4525485_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.7e-41	91.0
WP_007848874.1\|4525539_4526055_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	7.6e-87	93.0
WP_013098782.1\|4526064_4527237_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.7e-209	92.8
WP_044157605.1\|4527372_4527801_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.8e-26	47.6
WP_013098785.1\|4529122_4529728_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	2.1e-112	95.0
WP_013098786.1\|4529720_4530629_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.6e-146	92.4
WP_013098787.1\|4530615_4530975_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	2.4e-55	92.4
WP_013098788.1\|4530971_4531550_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.2e-106	96.9
WP_044157606.1\|4531618_4532065_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.2e-65	88.4
WP_013098790.1\|4532057_4532489_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.1e-74	96.5
WP_164928070.1\|4532584_4533013_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.1e-67	98.6
WP_013098792.1\|4533009_4533387_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	4.4e-60	96.8
WP_001069919.1\|4533391_4533901_-	lysozyme	A0A1S6KZY9	Salmonella_phage	2.2e-94	98.8
WP_000171565.1\|4533881_4534097_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_013098793.1\|4534100_4534304_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.5e-33	98.5
WP_010835209.1\|4534303_4534768_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-85	98.7
WP_013098794.1\|4534861_4535512_-\|terminase	small terminase subunit	A0A1S6KZX1	Salmonella_phage	3.2e-114	99.1
WP_013098795.1\|4535515_4536577_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	7.8e-195	99.2
WP_013098796.1\|4536593_4537427_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	1.8e-125	96.4
WP_044157610.1\|4537569_4539336_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.7
WP_013098798.1\|4539335_4540370_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.0e-174	89.6
WP_013098799.1\|4540407_4541256_-	hypothetical protein	NA	NA	NA	NA
WP_013098800.1\|4541265_4541928_-	hypothetical protein	NA	NA	NA	NA
WP_013098801.1\|4541947_4542757_-	TIGR04255 family protein	NA	NA	NA	NA
WP_013098802.1\|4542874_4543024_-	hypothetical protein	NA	NA	NA	NA
WP_001217561.1\|4543119_4543353_-	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_001154443.1\|4543364_4543553_-	hypothetical protein	A0A1S6L006	Salmonella_phage	6.1e-26	98.4
WP_013098803.1\|4543714_4546123_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	97.0
WP_013098804.1\|4546113_4546974_-	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.7e-131	81.1
WP_013098805.1\|4546970_4547198_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	93.3
WP_013098806.1\|4547197_4547431_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	6.0e-23	79.2
WP_013098807.1\|4547498_4547840_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	7.6e-51	85.8
WP_072072160.1\|4547803_4548004_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	6.7e-31	92.4
WP_013098809.1\|4548011_4548521_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.5e-82	91.7
WP_013098810.1\|4548555_4548792_-	hypothetical protein	NA	NA	NA	NA
WP_072072161.1\|4548880_4549534_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	3.5e-28	33.8
WP_044157615.1\|4549526_4549961_+	hypothetical protein	NA	NA	NA	NA
WP_013098812.1\|4550148_4551234_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	6.5e-120	60.2
4551274:4551289	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_014107

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_014107_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014107_1

48047-48181

Orphan

Consensus_repeat	Method
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014107_1

>merge|NC_014107|1|48047-48181|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCACCTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGTCTGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

>NC_014107|1|1|48047-48181|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGTC
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_014107.1\|WP_013087140.1\|52223_52427_+\|hypothetical-protein	unknown	unknown	unknown
NC_014107.1\|WP_013087142.1\|52801_53269_+\|hypothetical-protein	unknown	unknown	unknown
NC_014107.1\|WP_099516394.1\|39197_40411_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_014107.1\|WP_013087134.1\|46742_47708_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
NC_014107.1\|WP_000993245.1\|37862_38075_+\|DUF3330-domain-containing-protein	unknown	unknown	gnl\|CDD\|288642
NC_014107.1\|WP_013087143.1\|53791_54484_+\|DNA-methylase	unknown	unknown	gnl\|CDD\|184255
NC_014107.1\|WP_013087136.1\|49628_50060_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NC_014107.1\|WP_013087126.1\|41376_41667_+\|hypothetical-protein	unknown	unknown	unknown
NC_014107.1\|WP_013087135.1\|48357_49629_-\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|179607
NC_014107.1\|WP_013087138.1\|51265_51928_+\|plasmid-partitioning/stability-family-protein	unknown	unknown	gnl\|CDD\|119304
NC_014107.1\|WP_013087145.1\|54757_55180_+\|DUF1380-family-protein	unknown	unknown	gnl\|CDD\|369222
NC_014107.1\|WP_013087127.1\|41797_42328_+\|hypothetical-protein	unknown	unknown	unknown
NC_014107.1\|WP_001087807.1\|37560_37797_+\|broad-spectrum-mercury-transporter-MerE	unknown	unknown	gnl\|CDD\|184297
NC_014107.1\|WP_015572055.1\|43825_44836_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NC_014107.1\|WP_013087133.1\|45576_46743_+\|plasmid-partitioning-protein-SopA	unknown	unknown	gnl\|CDD\|184261
NC_014107.1\|WP_077681920.1\|50291_51263_+\|StbA-family-protein	unknown	unknown	gnl\|CDD\|310773
NC_014107.1\|WP_013087123.1\|40630_40834_-\|hypothetical-protein	unknown	unknown	unknown
NC_014107.1\|WP_013087139.1\|51931_52195_+\|hypothetical-protein	unknown	unknown	unknown
NC_014107.1\|WP_013087144.1\|54480_54702_+\|hypothetical-protein	unknown	unknown	unknown
NC_014107.1\|WP_013087128.1\|42346_43123_+\|phage-integrase-family-protein	unknown	unknown	gnl\|CDD\|334163

Protein	Function_ID	Function_description	E-value
NC_014107.1\|WP_013087143.1\|53791_54484_+\|DNA-methylase	gnl\|CDD\|184255	PRK13699, PRK13699, putative methylase; Provisional.	1.45083e-159
NC_014107.1\|WP_099516394.1\|39197_40411_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.29798e-96
NC_014107.1\|WP_013087134.1\|46742_47708_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	0
NC_014107.1\|WP_000993245.1\|37862_38075_+\|DUF3330-domain-containing-protein	gnl\|CDD\|288642	pfam11809, DUF3330, Domain of unknown function (DUF3330). This family of proteins are functionally uncharacterized. This family is only found in bacteria.	6.39794e-25
NC_014107.1\|WP_077681920.1\|50291_51263_+\|StbA-family-protein	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	1.8072e-124
NC_014107.1\|WP_013087135.1\|48357_49629_-\|Y-family-DNA-polymerase	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NC_014107.1\|WP_013087138.1\|51265_51928_+\|plasmid-partitioning/stability-family-protein	gnl\|CDD\|119304	pfam10784, Plasmid_stab_B, Plasmid stability protein. This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.	6.6336e-22
NC_014107.1\|WP_013087145.1\|54757_55180_+\|DUF1380-family-protein	gnl\|CDD\|369222	pfam07128, DUF1380, Protein of unknown function (DUF1380). This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.	6.51315e-21
NC_014107.1\|WP_013087136.1\|49628_50060_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	1.2172e-56
NC_014107.1\|WP_001087807.1\|37560_37797_+\|broad-spectrum-mercury-transporter-MerE	gnl\|CDD\|184297	PRK13747, PRK13747, putative mercury resistance protein; Provisional.	2.67797e-48
NC_014107.1\|WP_015572055.1\|43825_44836_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	0.000207968
NC_014107.1\|WP_013087133.1\|45576_46743_+\|plasmid-partitioning-protein-SopA	gnl\|CDD\|184261	PRK13705, PRK13705, plasmid-partitioning protein SopA; Provisional.	0
NC_014107.1\|WP_013087128.1\|42346_43123_+\|phage-integrase-family-protein	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	5.76168e-38

>NC_014107.1|WP_013087134.1|46742_47708_+|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKRAPVIPKHTVKDIRPETEPSAAPAAPMVDSLIARVGAMARGNTILLPVCGREVKFILEAIPGESVETASRVWSGNERDQELLTEDALDDLIPSFMLSGQQTPAFGRRVEGVIEIADGSRRRKAAILTSSDYRVLVGDLDDEQMMALSRLGNDYRPVSAYERGNRYAQRLENDFNGNISALAEAENISRKIITRCINTAHLPKSVVALFTHPGELSARSGETLYKAFSGKEALLLQRTQQLHEQKKAGVIFESEEVIGLLTDVLKEPSGKKVNLNTRHQFVPGATALYKGDKVIFNLDKSRLPAECIEKIESILRDLQKV
>NC_014107.1|WP_013087133.1|45576_46743_+|plasmid-partitioning-protein-SopA
MGLMETLDQCITAGHEMTKAIAIAQFNDDSPEARKITRRWRVGEAADLIGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVFGTRLRRPDDSVPPVIAVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGERDDAAYAVKATCWPGLDIIPSCLALHRIETELMGRFDNGKLPTEPRMMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLGKNVDLQGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
>NC_014107.1|WP_015572055.1|43825_44836_-|replication-initiation-protein
MAMENNELPLNLQEVNKTTGEVVKLDVNSASTVQPVALMRLGLFVPTLKSTSRSKTNRKNVTDATEELVQLSIARSEGYTDVRITGSRLDMDTDFKVWLGIIRSMYDFGVKDDTLKLSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETKGWTTHLVQSAYYDITADVVEIRAEPKLFELYQMDRRVLLRLKAIDALQRKESAQALYTYIESLPQNPAPISMKRMRDRLNLTSNLYTQNHTVRKAMAQLKDIGYLDYTEFKRGRATYFSVHYRNPKLISSKVVVPREPEEEVPEQNYDEVIKALKAAGIDPQKLAKALASVKPGND
>NC_014107.1|WP_013087128.1|42346_43123_+|phage-integrase-family-protein
MMPALPGHSGAFSSAQLPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKMLLTTLWNTGARINEALALTRSDFSLAPPYPFVQLATLKQRVEKAARTAGRAPAGSQPHRNVPLSDPQYARQLEMMVATLKIPLERRNKRTGRTEKVRIWEITDRTVRTWLGEAVEAAAADGVTFSVPVTPHTFRHSYALHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFSMAQADAVAMLKKR
>NC_014107.1|WP_013087127.1|41797_42328_+|hypothetical-protein
MCKLTGFIMGLTILLGVTARDAGAATLSEMRMVNASQKPGMVIICSRTSEIPQKGESPVRIESLLRGVVLQNDGDRMMFDVTYTQRNAEESIPFRTEKYRLTTELEATRQKMAIDPETIELSLPRARGLEETFLAGMKASPVSFEDYTNYRVKSATEYLILPGPASPDAPVMHCTL
>NC_014107.1|WP_013087126.1|41376_41667_+|hypothetical-protein
MNMKITLSVLFEALIILGHDRVWMEESEFEHIYGYGCYREIHTWDDRTVAWWDDADDTWYLSTEVDVITPFLGPLPKKEGELSEEKCFQLMTLGRY
>NC_014107.1|WP_013087123.1|40630_40834_-|hypothetical-protein
MTVFLILTAIAYGIVSTGGYILLVDKGYQGWTLFWKNYDDLPHIYRSRWRYQRRFILRRIWKRLFNR
>NC_014107.1|WP_099516394.1|39197_40411_-|IS3-family-transposase
MIFSPQHKTGDLMNKKTKRTFPPEFRLECAQLIVDKGYSYRQASEAMNVGSTTLESWVRQLRRERQGITPSATPITPDQQRIRELEKQVRRLEEQNTIFKKGYRALNVRLAERFTIAARLSDSHTVVSLCSALEIHRSSYRYWRKRRDTVNPARVRLCSEIRRAWNQSRGSAGARTLAEMLTQNGVPMSRYRAGRLMKYLNLSSCQPGKHQYKNARQEHTSLPNLLERQFAVPEPDRVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRMAYETRGQPRDVMFHSDQGSQYTGLKYQQLLWRCRINQSVSRRGNCWDNSPMERFFRSLKTEWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENRYHFYCKTVASIT
>NC_014107.1|WP_000993245.1|37862_38075_+|DUF3330-domain-containing-protein
MNANAPNTASCTTCCVCCKEIPLDAAFTPEGAEYVEHFCGLDCYERFQARAKAATESDIAPVPGGSQPSD
>NC_014107.1|WP_001087807.1|37560_37797_+|broad-spectrum-mercury-transporter-MerE
MNSPEHLPSETHKPITGYLWGALAVLTCPCHLPILAIVLAGTTAGAFIGEHWGIAALTLTGLFVLSVTRLLRAFKGRS
>NC_014107.1|WP_013087135.1|48357_49629_-|Y-family-DNA-polymerase
MFALADVNSFYASCERVFRPDLKGKPVVVLSNNDGCVIARSAEAKPWIKMGMPWFQMKNETYPEKIYAFSSNYELYASMSARVMSCLEELAPRVEQYSIDEMFLDLTGVEHCMDLEDFGRQLRQHVYDCTRLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIRTALDLALTNPAFIRKNFSVVLERTVRELNGESCMSLEEAPPTKQQIVCSRSFGEKITEYDSLRQAVCQYAERASEKLRKERQYCRHISVFIKTSPFAVKEPYYGNVATEKLLTPTQDTRDIIAAATTALERIWKDGHLYAKAGVMLNDFTGSGVSQLQLFDERPPRPHSSELMKVLDGINHSGLGQIWFAGRGIAPSWQMKRDMLSPAYTTRWKDIPVARIR
>NC_014107.1|WP_013087136.1|49628_50060_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MKLQLFSTGKALPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDSAEKPRHGDIVVASVQGEFTVKRLLLTPRLTLQPMNAAWPPIYPDPDDLDIFGVVTHIIHRPREMY
>NC_014107.1|WP_077681920.1|50291_51263_+|StbA-family-protein
MNIYCDDGSTNVKLAWFEGNELQTRVSANSFRHGWKVAEFSAATFNYQVGTLKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNSGLEPQPVSLAVTLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKPGPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSVGVSQVTRAAAGALRAADSETSALIADTVIRNRNDRQYLQRVINDAGKIDDVLNKITEAITSLGARVTSELTVFRSVNRVFLVGGGASLIEEAIRQAWPLAPDRIEVIGDPQLALAREIALYNKED
>NC_014107.1|WP_013087138.1|51265_51928_+|plasmid-partitioning/stability-family-protein
MPDGQYSFYLHSDDRTDITAMATISTISQPLRGDFIRTAATAGAVMYQTDARLPALIPVFFDGHLSAIRLCAVMALVSGTWSSLSGLPDEPDGGVAALAMSPETEYQRRRYTLTLQDDRSSERVERVLTGVSSRLRGELLRNLIITGLALHTTAPELPRLLASMPVPPGTVSELQVLVQQMADTADVSMAAVPAKPAEPAAPVSAEATSIKKNMRRAFGD
>NC_014107.1|WP_013087139.1|51931_52195_+|hypothetical-protein
MSVIKQKAVQCIHNFLRARNVPESQWPERVKKTGRGMILAGVAVVVPGVLVDNISLPVTIAMQVCYASLIGLGVLLAFDEKKPEGRG
>NC_014107.1|WP_013087140.1|52223_52427_+|hypothetical-protein
MQLEELTGDERTLVVVALQALFRERLSASNAVFTVCSLSGKEQPPEDIFGLREVEDALRRIGAAPAR
>NC_014107.1|WP_013087142.1|52801_53269_+|hypothetical-protein
MFRLTCIEPDNGEFAVYINHHYLGSEDASGERLSLGEVLEQLSLLPGVELQTLLEPVPECDDWCWNDIADRVLPPRPACRDDVTVAGLIARLKQYPPDALCMGTFWLEDDFLSLDSSLSEEEIAEAMRIGDHSHDAGIGFNWDTLQFAIDHVKGR
>NC_014107.1|WP_013087143.1|53791_54484_+|DNA-methylase
MSRFILGDCVQVMSRFPARAVDFILTDPPYLVGYKDRTGRTLAGDNSAEWLQPACHEMYRVLKNDSLMVSFYAWNRADLFLNAWKTAGFRVVGHIVFAKSYASKSTFVGYTHESAYLLAKGRPQTPDRPIPDVIPWKYTGNRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYHAAGVRRLAQVERARRMPAANDGAFYPDWPEAA
>NC_014107.1|WP_013087144.1|54480_54702_+|hypothetical-protein
MNYPGLEHLRADVAALSNAMCDVRMLLNRLESQHRHDAATLTERMAAQTLRRINTLLLEAYREALVLDETFQD
>NC_014107.1|WP_013087145.1|54757_55180_+|DUF1380-family-protein
MYGTREELCVQLKNMFTFDEPLVLLVWTEEGISVACREAQPEPDGAEIRNLMKAIGEMKMTQYRQEGVNNLTVSDLLARQWEVANRQVSVPAVLLSRVLRNYECELENRIGMAWEAGRQEPESVRNELKDVHALQETLAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP012428	Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence	20127-20165	0	1.0
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NC_014107	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	48095-48133	0	1.0
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP046273	Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence	40032-40070	0	1.0
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP012169	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence	40032-40070	0	1.0
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP042541	Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence	40032-40070	0	1.0
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP031723	Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence	50311-50349	0	1.0
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP042567	Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence	40032-40070	0	1.0
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP035636	Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence	100226-100264	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1315-1353	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1402-1440	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP031569	Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence	7815-7853	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP050011	Citrobacter sp. Y3 plasmid unnamed2, complete sequence	27572-27610	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP019840	Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence	70340-70378	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP022149	Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence	50338-50376	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	14593-14631	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP008907	Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence	83191-83229	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP026851	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1	65584-65622	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_LT991956	Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2	52487-52525	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP029719	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence	1341-1379	1	0.974
NC_014107_1	1.1\|48095\|39\|NC_014107\|CRISPRCasFinder	48095-48133	39	NZ_CP039454	Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence	72766-72804	3	0.923

1. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP012428 (Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
***************************************

2. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
***************************************

3. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
***************************************

4. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
***************************************

5. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
***************************************

6. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
***************************************

7. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
***************************************

8. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

9. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

10. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

11. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

12. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP050011 (Citrobacter sp. Y3 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

13. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

14. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP022149 (Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

15. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

16. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

17. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

18. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

19. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
*************************************.*

20. spacer 1.1|48095|39|NC_014107|CRISPRCasFinder matches to NZ_CP039454 (Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence) position: , mismatch: 3, identity: 0.923

ctcctacttgcgtgtcagaactcatccttcaaccccgtc	CRISPR spacer
ctcctacttgcgtttcagaactcatccgtcaaccccgcc	Protospacer
************* ************* *********.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39197 : 89855

uncultured_Caudovirales_phage(31.58%)

transposase,integrase

attL 35844:35859|attR 70561:70576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
35844:35859	attL	NA	NA	NA	NA
WP_099516394.1\|39197_40411_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.7e-100	57.8
WP_013087123.1\|40630_40834_-	hypothetical protein	NA	NA	NA	NA
WP_013087126.1\|41376_41667_+	hypothetical protein	NA	NA	NA	NA
WP_013087127.1\|41797_42328_+	hypothetical protein	NA	NA	NA	NA
WP_013087128.1\|42346_43123_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.5e-51	89.4
WP_015572055.1\|43825_44836_-	replication initiation protein	J9Q7H0	Salmonella_phage	6.3e-85	55.2
WP_013087133.1\|45576_46743_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.8e-216	93.8
WP_013087134.1\|46742_47708_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	9.8e-136	76.9
WP_013087135.1\|48357_49629_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.7e-154	63.0
WP_013087136.1\|49628_50060_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	53.3
WP_077681920.1\|50291_51263_+	StbA family protein	A0A222YXF2	Escherichia_phage	8.2e-74	47.4
WP_013087138.1\|51265_51928_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_013087139.1\|51931_52195_+	hypothetical protein	NA	NA	NA	NA
WP_013087140.1\|52223_52427_+	hypothetical protein	NA	NA	NA	NA
WP_013087142.1\|52801_53269_+	hypothetical protein	NA	NA	NA	NA
WP_013087143.1\|53791_54484_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	7.5e-29	36.7
WP_013087144.1\|54480_54702_+	hypothetical protein	NA	NA	NA	NA
WP_013087145.1\|54757_55180_+	DUF1380 family protein	NA	NA	NA	NA
WP_013087148.1\|55536_55965_+	antirestriction protein	NA	NA	NA	NA
WP_013087149.1\|56007_56418_+	DUF1380 family protein	NA	NA	NA	NA
WP_071888820.1\|56468_56666_+	hypothetical protein	NA	NA	NA	NA
WP_013087154.1\|57435_57708_+	hypothetical protein	NA	NA	NA	NA
WP_013087155.1\|57751_58117_+	hypothetical protein	NA	NA	NA	NA
WP_013087156.1\|58184_60197_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_032669078.1\|60234_60669_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_013087158.1\|60665_61397_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_013087159.1\|61393_61624_+	hypothetical protein	NA	NA	NA	NA
WP_032669168.1\|61665_61845_+	hypothetical protein	NA	NA	NA	NA
WP_087654045.1\|62066_63435_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-78	69.7
WP_012540252.1\|63653_64004_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	5.3e-23	50.9
WP_012540111.1\|64051_64414_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_013087164.1\|64431_66183_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_012540054.1\|66230_67520_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	4.6e-173	74.5
WP_013087165.1\|67532_67958_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.5e-51	71.4
WP_013087166.1\|67992_68529_-	N-acetyltransferase	NA	NA	NA	NA
WP_162875198.1\|68653_70405_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_013087168.1\|70431_70794_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
70561:70576	attR	NA	NA	NA	NA
WP_013087169.1\|70869_71415_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013087170.1\|71423_72137_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.1e-95	72.3
WP_013087171.1\|72138_72462_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012540086.1\|72762_73029_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_013087172.1\|73016_73502_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000589001.1\|73920_75261_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_032072095.1\|75516_75939_-	nickel resistance OB fold protein NcrY	NA	NA	NA	NA
WP_004196366.1\|76100_77231_-	Ni(II)/Co(II) efflux transporter permease subunit NcrC	NA	NA	NA	NA
WP_004196355.1\|77243_77513_-	nickel-sensing transcriptional repressor NcrB	NA	NA	NA	NA
WP_004196314.1\|77618_78917_-	nickel resistance membrane nickel efflux protein NirA	NA	NA	NA	NA
WP_004196325.1\|79150_79909_-	hypothetical protein	NA	NA	NA	NA
WP_004196315.1\|79962_80883_-	hypothetical protein	NA	NA	NA	NA
WP_004196359.1\|80945_81317_-	hypothetical protein	NA	NA	NA	NA
WP_004196334.1\|81663_82641_+	chromate resistance protein	NA	NA	NA	NA
WP_004196363.1\|82597_83974_+	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	1.6e-27	64.6
WP_013087175.1\|84004_84694_-	hypothetical protein	NA	NA	NA	NA
WP_008460272.1\|84707_85445_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_009651956.1\|85488_85854_-	hypothetical protein	NA	NA	NA	NA
WP_087451024.1\|85889_87010_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_004196370.1\|87329_87569_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	9.1e-19	54.4
WP_000323025.1\|87568_87856_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_085929673.1\|88686_89855_-\|transposase	IS3-like element ISEc52 family transposase	Q716C2	Shigella_phage	1.9e-178	96.1

DBSCAN-SWA_2

132965 : 172174

Shigella_phage(16.67%)

protease,transposase,integrase

attL 139717:139733|attR 172715:172731

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013087234.1\|132965_133943_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.7e-47	39.7
WP_013087235.1\|134175_135327_+	hypothetical protein	NA	NA	NA	NA
WP_099516394.1\|136144_137357_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.7e-100	57.8
WP_032662300.1\|137368_138868_-	kinase	NA	NA	NA	NA
WP_013087238.1\|138893_140531_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
139717:139733	attL	NA	NA	NA	NA
WP_013087239.1\|140530_141571_-	VWA domain-containing protein	NA	NA	NA	NA
WP_013087240.1\|141656_142295_-	VWA domain-containing protein	NA	NA	NA	NA
WP_000116681.1\|142294_142936_-	TerD family protein	NA	NA	NA	NA
WP_001388628.1\|142958_143597_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001176767.1\|144060_144528_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_000506888.1\|144545_145754_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000797363.1\|145764_146721_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_001182415.1\|146720_147800_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	7.3e-39	34.4
WP_001040062.1\|147801_148575_-	hypothetical protein	NA	NA	NA	NA
WP_001282603.1\|148567_149710_-	phosphoribosyltransferase domain-containing protein	A0A172Q0Y1	Acinetobacter_phage	1.5e-29	34.5
WP_013087241.1\|149719_150802_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_000254136.1\|151098_151680_+	TerD family protein	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_001054787.1\|151679_152837_+	TerD family protein	NA	NA	NA	NA
WP_000007448.1\|152859_153315_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|153337_154378_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116677.1\|154426_155005_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	3.3e-06	40.0
WP_000301242.1\|155072_155648_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053338.1\|156076_157318_+	VWA domain-containing protein	NA	NA	NA	NA
WP_000077926.1\|157880_158162_-	hypothetical protein	NA	NA	NA	NA
WP_000398480.1\|158211_158403_-	hypothetical protein	NA	NA	NA	NA
WP_001151575.1\|158494_158836_-	hypothetical protein	NA	NA	NA	NA
WP_000341066.1\|159208_159601_+	hypothetical protein	NA	NA	NA	NA
WP_000427623.1\|160289_161294_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_003100847.1\|161372_161930_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|161923_162295_-	hypothetical protein	NA	NA	NA	NA
WP_044159268.1\|162291_162753_-	hypothetical protein	NA	NA	NA	NA
WP_003465068.1\|162884_164564_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	2.6e-06	25.4
WP_003465065.1\|164566_165475_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_013087245.1\|165471_166689_+	TniQ family protein	NA	NA	NA	NA
WP_000904941.1\|166749_167364_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.6e-37	50.3
WP_001087809.1\|167416_167653_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_003465059.1\|167649_168015_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000136268.1\|168031_169678_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-39	28.3
WP_000654684.1\|169674_169920_-	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_000735441.1\|169922_170198_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294667.1\|170213_170564_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000429838.1\|170635_171070_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000427623.1\|171169_172174_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
172715:172731	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014121

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_014107

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection