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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_013890 Dehalococcoides mccartyi GT, complete sequence 1 crisprs csa3,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL 0 16 2 0

Results visualization

1. NC_013890
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013890_1 1176477-1178766 TypeI-E I-B,III-A,III-B
37 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_013890_1 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1178585-1178616 32 NZ_CP017943 Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence 361915-361946 6 0.812
NC_013890_1 1.7|1176873|32|NC_013890|CRISPRCasFinder,CRT 1176873-1176904 32 MN693153 Marine virus AFVG_25M248, complete genome 7495-7526 7 0.781
NC_013890_1 1.7|1176873|32|NC_013890|CRISPRCasFinder,CRT 1176873-1176904 32 MN693225 Marine virus AFVG_25M249, complete genome 7449-7480 7 0.781
NC_013890_1 1.9|1176995|33|NC_013890|CRISPRCasFinder,CRT 1176995-1177027 33 NC_009231 Clostridium phage phiC2, complete genome 20355-20387 7 0.788
NC_013890_1 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177545-1177576 32 AP014389 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C77, *** SEQUENCING IN PROGRESS *** 8357-8388 7 0.781
NC_013890_1 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177913-1177944 32 MT375526 Pelagibacter phage Himinglaeva EXVC011P, complete genome 23484-23515 7 0.781
NC_013890_1 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177913-1177944 32 MT375531 Pelagibacter phage Unn EXVC019P, complete genome 5017-5048 7 0.781
NC_013890_1 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177913-1177944 32 MT375520 Pelagibacter phage Bylgja EXVC0, complete genome 23484-23515 7 0.781
NC_013890_1 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177913-1177944 32 AP013545 Uncultured phage_MedDCM-OCT-S46-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C10 6080-6111 7 0.781
NC_013890_1 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177913-1177944 32 MT375527 Pelagibacter phage Hroenn EXVC0, complete genome 33107-33138 7 0.781
NC_013890_1 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1178585-1178616 32 NZ_CP021461 Lactobacillus brevis strain ZLB004 plasmid p5, complete sequence 11193-11224 7 0.781
NC_013890_1 1.10|1177057|32|NC_013890|CRISPRCasFinder,CRT 1177057-1177088 32 NC_014533 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence 123506-123537 8 0.75
NC_013890_1 1.13|1177240|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177240-1177271 32 KC801932 Escherichia phage Lw1, complete genome 72841-72872 8 0.75
NC_013890_1 1.26|1178035|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1178035-1178066 32 MN855588 Bacteriophage sp. isolate 130, complete genome 14324-14355 8 0.75
NC_013890_1 1.7|1176873|32|NC_013890|CRISPRCasFinder,CRT 1176873-1176904 32 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 8396-8427 9 0.719
NC_013890_1 1.13|1177240|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177240-1177271 32 MN694417 Marine virus AFVG_250M100, complete genome 29022-29053 9 0.719
NC_013890_1 1.16|1177423|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177423-1177454 32 NC_013193 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence 46520-46551 9 0.719
NC_013890_1 1.16|1177423|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177423-1177454 32 MH622943 Myoviridae sp. isolate ctbc_4, complete genome 94774-94805 9 0.719
NC_013890_1 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177545-1177576 32 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 421706-421737 9 0.719
NC_013890_1 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177545-1177576 32 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 421714-421745 9 0.719
NC_013890_1 1.19|1177606|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177606-1177637 32 NZ_CP035513 Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence 145893-145924 9 0.719
NC_013890_1 1.21|1177728|33|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177728-1177760 33 KP282679 Sulfolobales virus YNP1 strain SYV1, complete genome 22256-22288 9 0.727
NC_013890_1 1.33|1178462|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1178462-1178493 32 NC_028999 Pseudomonas phage PhiPA3, complete genome 245916-245947 9 0.719
NC_013890_1 1.4|1176688|32|NC_013890|CRISPRCasFinder,CRT 1176688-1176719 32 MW145137 Providencia phage PSTNGR2lys, complete genome 23945-23976 10 0.688
NC_013890_1 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT 1177118-1177149 32 LR214956 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 2 464-495 10 0.688
NC_013890_1 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT 1177118-1177149 32 NZ_LR214999 Mycoplasma conjunctivae strain NCTC10147 plasmid 3 105974-106005 10 0.688
NC_013890_1 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT 1177118-1177149 32 LR214965 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11 95566-95597 10 0.688
NC_013890_1 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT 1177118-1177149 32 LR214959 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 5 12176-12207 10 0.688
NC_013890_1 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT 1177118-1177149 32 LR214960 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 6 8516-8547 10 0.688
NC_013890_1 1.12|1177179|32|NC_013890|CRISPRCasFinder,CRT 1177179-1177210 32 MN855825 Bacteriophage sp. isolate 166, complete genome 9812-9843 10 0.688
NC_013890_1 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177545-1177576 32 KM659092 Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence 89082-89113 10 0.688
NC_013890_1 1.25|1177974|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1177974-1178005 32 NZ_CP020005 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence 407005-407036 10 0.688
NC_013890_1 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1178585-1178616 32 MN695335 Synechococcus phage B23, complete genome 139685-139716 10 0.688
NC_013890_1 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR 1178585-1178616 32 MN695334 Synechococcus phage B3, complete genome 141174-141205 10 0.688

1. spacer 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

---cattctttttgactgatttttatctcggctgt	CRISPR spacer
gcgcatgc---ttgtctgatatttatctcggctgt	Protospacer
   *** *   *** ***** **************

2. spacer 1.7|1176873|32|NC_013890|CRISPRCasFinder,CRT matches to MN693153 (Marine virus AFVG_25M248, complete genome) position: , mismatch: 7, identity: 0.781

-cacgcagtaatataatattcattcacataagg	CRISPR spacer
acac-cagtaatataaaattcattaacaacata	Protospacer
 *** *********** ******* ***  * .

3. spacer 1.7|1176873|32|NC_013890|CRISPRCasFinder,CRT matches to MN693225 (Marine virus AFVG_25M249, complete genome) position: , mismatch: 7, identity: 0.781

-cacgcagtaatataatattcattcacataagg	CRISPR spacer
acac-cagtaatataaaattcattaacaacata	Protospacer
 *** *********** ******* ***  * .

4. spacer 1.9|1176995|33|NC_013890|CRISPRCasFinder,CRT matches to NC_009231 (Clostridium phage phiC2, complete genome) position: , mismatch: 7, identity: 0.788

-accagctagtgaattaactactaataatgcgac	CRISPR spacer
aggcaatta-tgaattaactattaataatgctac	Protospacer
 . **..** ***********.********* **

5. spacer 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to AP014389 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C77, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

gtctctggacatatcaccgctggccttgattt	CRISPR spacer
gcctctggacataccaacgctggccagcatat	Protospacer
*.***********.** ********   ** *

6. spacer 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MT375526 (Pelagibacter phage Himinglaeva EXVC011P, complete genome) position: , mismatch: 7, identity: 0.781

gtat-cccctatatattgccacaaaaatagcta	CRISPR spacer
-tatgcccctatattttgccaaaaaaatgcgaa	Protospacer
 *** ********* ****** ******.   *

7. spacer 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MT375531 (Pelagibacter phage Unn EXVC019P, complete genome) position: , mismatch: 7, identity: 0.781

gtat-cccctatatattgccacaaaaatagcta	CRISPR spacer
-tatgcccctatattttgccaaaaaaatgcgaa	Protospacer
 *** ********* ****** ******.   *

8. spacer 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MT375520 (Pelagibacter phage Bylgja EXVC0, complete genome) position: , mismatch: 7, identity: 0.781

gtat-cccctatatattgccacaaaaatagcta	CRISPR spacer
-tatgcccctatattttgccaaaaaaatgcgaa	Protospacer
 *** ********* ****** ******.   *

9. spacer 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to AP013545 (Uncultured phage_MedDCM-OCT-S46-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C10) position: , mismatch: 7, identity: 0.781

gtat-cccctatatattgccacaaaaatagcta	CRISPR spacer
-tatgcccctatattttgccaaaaaaatgcgaa	Protospacer
 *** ********* ****** ******.   *

10. spacer 1.24|1177913|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MT375527 (Pelagibacter phage Hroenn EXVC0, complete genome) position: , mismatch: 7, identity: 0.781

gtat-cccctatatattgccacaaaaatagcta	CRISPR spacer
-tatgcccctatattttgccaaaaaaatgcgaa	Protospacer
 *** ********* ****** ******.   *

11. spacer 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021461 (Lactobacillus brevis strain ZLB004 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

cattctttttgactgatttttatctcggctgt--	CRISPR spacer
tcttctttttgactgtttttgatct--gctgatt	Protospacer
. ************* **** ****  ****   

12. spacer 1.10|1177057|32|NC_013890|CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 8, identity: 0.75

caataggaaaagtcttgtcaattcccttccag	CRISPR spacer
caggagcaaaagtcttgacaattccctgtgat	Protospacer
**. ** ********** ********* . * 

13. spacer 1.13|1177240|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to KC801932 (Escherichia phage Lw1, complete genome) position: , mismatch: 8, identity: 0.75

tttgttctttgaaatatgccgcatcgctaggg	CRISPR spacer
tgtgttctttgaaatactccgcatcatacgcg	Protospacer
* **************. *******..  * *

14. spacer 1.26|1178035|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MN855588 (Bacteriophage sp. isolate 130, complete genome) position: , mismatch: 8, identity: 0.75

gggtctacagcgtgaaaatggtctaaacgcca	CRISPR spacer
gcatctacagcattaaaatggtctaacttccc	Protospacer
* .********.* ************ . ** 

15. spacer 1.7|1176873|32|NC_013890|CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cacgcagtaatataatattcattcacataagg	CRISPR spacer
ctattaggaatataatattcatccacatttag	Protospacer
*   .** **************.*****  .*

16. spacer 1.13|1177240|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MN694417 (Marine virus AFVG_250M100, complete genome) position: , mismatch: 9, identity: 0.719

tttgttctttgaaatatgccgcatcgctaggg	CRISPR spacer
tactctttttgaaaaatggcgcatcgctagtt	Protospacer
* . .*.******* *** ***********  

17. spacer 1.16|1177423|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 9, identity: 0.719

ttccaccagaacgaagcgtttttcataaccac	CRISPR spacer
caatagacgaacgaagcgtttttcacaaccaa	Protospacer
.  .*   *****************.***** 

18. spacer 1.16|1177423|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 9, identity: 0.719

ttccaccagaacgaagcgtttttcataaccac	CRISPR spacer
gagcaccagaacgaagagttttttatattgat	Protospacer
   ************* ******.*** . *.

19. spacer 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 9, identity: 0.719

----gtctctggacatatcaccgctggccttgattt	CRISPR spacer
caggatc----gacatatcaccgccggcctggatca	Protospacer
    .**    *************.***** ***. 

20. spacer 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 9, identity: 0.719

----gtctctggacatatcaccgctggccttgattt	CRISPR spacer
caggatc----gacatatcaccgccggcctggatca	Protospacer
    .**    *************.***** ***. 

21. spacer 1.19|1177606|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 9, identity: 0.719

gcagtagaggatatcccgtcttggcccgcgtt	CRISPR spacer
ccgaagaaggccatcccgtcttggcccgcgtc	Protospacer
 *.. ..*** .*******************.

22. spacer 1.21|1177728|33|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to KP282679 (Sulfolobales virus YNP1 strain SYV1, complete genome) position: , mismatch: 9, identity: 0.727

cctggtgaaactgaagaagacaaggaactgaca	CRISPR spacer
gatagtgaaactgaagaagagaagaaacaaaat	Protospacer
  *.**************** ***.*** .*  

23. spacer 1.33|1178462|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NC_028999 (Pseudomonas phage PhiPA3, complete genome) position: , mismatch: 9, identity: 0.719

gcgtccatcatatggctgtactg-gtgggtggt	CRISPR spacer
gcgaccatcaaatggctgtactgcaaaagcag-	Protospacer
*** ****** ************ . ..*..* 

24. spacer 1.4|1176688|32|NC_013890|CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 10, identity: 0.688

actgccgcaaatagtgcccacatggcgcctat	CRISPR spacer
aaccatgcaaatagtgcacacatagcgccatc	Protospacer
* .  .*********** *****.*****  .

25. spacer 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT matches to LR214956 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.688

accttcaatttcagaagctagtttgggagaga	CRISPR spacer
gtctttaatttcagaatctagtttgaataatt	Protospacer
..***.********** ********.. .*  

26. spacer 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 10, identity: 0.688

accttcaatttcagaagctagtttgggagaga	CRISPR spacer
gtctttaatttcagaatctagtttgaataatt	Protospacer
..***.********** ********.. .*  

27. spacer 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 10, identity: 0.688

accttcaatttcagaagctagtttgggagaga	CRISPR spacer
gtctttaatttcagaatctagtttgaataatt	Protospacer
..***.********** ********.. .*  

28. spacer 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT matches to LR214959 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 5) position: , mismatch: 10, identity: 0.688

accttcaatttcagaagctagtttgggagaga	CRISPR spacer
gtctttaatttcagaatctagtttgaataatt	Protospacer
..***.********** ********.. .*  

29. spacer 1.11|1177118|32|NC_013890|CRISPRCasFinder,CRT matches to LR214960 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 6) position: , mismatch: 10, identity: 0.688

accttcaatttcagaagctagtttgggagaga	CRISPR spacer
gtctttaatttcagaatctagtttgaataatt	Protospacer
..***.********** ********.. .*  

30. spacer 1.12|1177179|32|NC_013890|CRISPRCasFinder,CRT matches to MN855825 (Bacteriophage sp. isolate 166, complete genome) position: , mismatch: 10, identity: 0.688

actctctggctagttgttctatgattgcatca	CRISPR spacer
tctctttggttagttgttctatgacgaatttg	Protospacer
 ****.***.**************. .  *..

31. spacer 1.18|1177545|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to KM659092 (Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence) position: , mismatch: 10, identity: 0.688

gtctctggacatatcaccgctggccttgattt	CRISPR spacer
atacaaggacatatcacaactggccttgaaag	Protospacer
.* .  *********** .**********   

32. spacer 1.25|1177974|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

tactggctatggtgcatggaaacagatgaatt	CRISPR spacer
gaaatctgatgatgaatggaaacagatgaatg	Protospacer
 *    . ***.** **************** 

33. spacer 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MN695335 (Synechococcus phage B23, complete genome) position: , mismatch: 10, identity: 0.688

cattctttttgactgatttttatctcggctgt	CRISPR spacer
atttctttctgacttatttttatctaaaacat	Protospacer
  ******.***** ********** .. ..*

34. spacer 1.35|1178585|32|NC_013890|CRISPRCasFinder,CRT,PILER-CR matches to MN695334 (Synechococcus phage B3, complete genome) position: , mismatch: 10, identity: 0.688

cattctttttgactgatttttatctcggctgt	CRISPR spacer
atttctttctgacttatttttatctaaaacat	Protospacer
  ******.***** ********** .. ..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 232410 : 239188 7 uncultured_Mediterranean_phage(33.33%) tRNA NA
DBSCAN-SWA_2 426727 : 442148 15 Bacillus_phage(20.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage