CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013894	Thermocrinis albus DSM 14484, complete sequence	6 crisprs	cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	0	2	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013894_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013894_1

1-90

TypeIII

Consensus_repeat	Method
CAACTCCACACGGTACATTAGAAAC	CRISPRCasFinder

1 spacers

cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11

The CRISPR arrays of NC_013894_1

>merge|NC_013894|1|1-90|CRISPRCasFinder
CAACTCCACACGGTACATTAGAAACTCCAGCTCGGGCGTTTCCTCAGTCCCTTGTTCTTGCCTTTCAACTCCACACGGTACATTAGAAAC

>NC_013894|1|1|1-90|CRISPRCasFinder
CAACTCCACACGGTACATTAGAAAC	TCCAGCTCGGGCGTTTCCTCAGTCCCTTGTTCTTGCCTTT
CAACTCCACACGGTACATTAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013894.1\|WP_012991052.1\|5497_7357_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_013894.1\|WP_012991053.1\|7358_8357_+\|CRISPR-associated-protein,-Cmr3	cmr3gr5	cd09656_cmr3gr5_CAS-III-B	gnl\|CDD\|187787
NC_013894.1\|WP_174248487.1\|392_860_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012991051.1\|4397_5501_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_013894.1\|WP_012991049.1\|2261_3722_+\|SAVED-domain-containing-protein	unknown	unknown	gnl\|CDD\|380122
NC_013894.1\|WP_012991054.1\|8358_9279_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_013894.1\|WP_012991055.1\|9256_9640_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_013894.1\|WP_012991050.1\|3690_4410_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NC_013894.1\|WP_012991048.1\|1471_2278_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012991047.1\|831_1485_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013894.1\|WP_012991052.1\|5497_7357_+\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	4.55997e-52
NC_013894.1\|WP_012991049.1\|2261_3722_+\|SAVED-domain-containing-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	2.71956e-26
NC_013894.1\|WP_012991053.1\|7358_8357_+\|CRISPR-associated-protein,-Cmr3	gnl\|CDD\|187787	cd09656, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.51197e-22
NC_013894.1\|WP_012991051.1\|4397_5501_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.40062e-20
NC_013894.1\|WP_012991054.1\|8358_9279_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.73677e-66
NC_013894.1\|WP_012991055.1\|9256_9640_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	6.40275e-37
NC_013894.1\|WP_012991050.1\|3690_4410_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.48619e-33

>NC_013894.1|WP_174248487.1|392_860_+|hypothetical-protein
MAFVYNTYMGGQPIKGVEKLISKVEERFLGFVKLEGLRYLEGLLNVDLGSEKRKGRPFIGWYKNGCMFLVFLTTKRRAYKVFVNGCNKQELCQWIDEESYVFYDYRHRGYFVYKVKEDQLKWKEQIVFCGFCHPEATSAIDVLRSYYEGEDSCSH
>NC_013894.1|WP_012991047.1|831_1485_+|hypothetical-protein
MKEKILALINGDLKTKSFFLNLIMKEARLTQRDIFLKKYLGENYEEEVFSQLILKLLSIKDALSKKEEINFHYVKKLIRSAIEETLKLYSHRFVSLEKLTKETSDGKEIRYEELLGKDERLDINIEVNELVNAILSILSEKDMEVLCYYLEKELYGKSNIEPSMTKDALYKRWERLKTKIRKNVYVPDETTLRYALEKILSDFCSKGRFIKGGYGRD
>NC_013894.1|WP_012991048.1|1471_2278_+|hypothetical-protein
MVEIKKKLLNRFLRSIGDEVLEVPEESRISGKEGQIRLFLIDPPEYVLVLKRDLDLNIIVPLTPYFELLPEEAPILVLEGPAPDHPFFRGDKARLVLKPLPFWVHVHEKILTRYSTLINMHIVNEEVVGEIKEYIKLDIKSIKDKYVRKFVEKNLERWQDINWSSILYNVIKGEEEEEISEIVVQAPEVFKEGSYALAADISALRGDNWLGVKEENKLVIYPARKSAKIKVVYKDTIIYEGPFISKIVVEGIKDVPKDIEEGLHVEFF
>NC_013894.1|WP_012991049.1|2261_3722_+|SAVED-domain-containing-protein
MWSFSEIEERHFEVLLWSGKMDDLLDEVMREFYSLPAKSQFNLVWYIKEKRVHPSVNLMAEVWEVPEEDVEAWLNGPYRLFLVPVVDEKGEAHLVKGLSVKGAGQSIITNQKHLLKYMKELKEFLKEGFGLFFEEDIKGESFLLPAAVSLYIENPPEDAVFTGRVDREGKIYTVDNISKKRKAAQKEGKRLIDSSGIKSLQELKEWCDAKEHHVPFMVTTKGSEDWLSKWRDFLSYMKDSENIVRKLEIINGITAEDLVLYTEQLPKGDWTKYMMDFYRKLTDVEKRLKGKVIFHLAIDGPASFAFGLGILFGSQKPFTVYHYQNGKYYPIEVENVRELKQRMELSEITLKWSLESRDDRLAVVIDLAHHTSIGTVKAYIDDGMSLLHVEHPHKGNLKVEEISQIARQCASLLQEIRTERDYKEFHFFFSSPVVFAFMLGVAFGHYSPGYIYQYFDGTYVKVLDISHLKAIREGKNLALSGETKTP
>NC_013894.1|WP_012991050.1|3690_4410_+|CRISPR-associated-endoribonuclease-Cas6
MRFLVRLKPLKEQAVINVDYRRRFISLLKKILGTDYFESIKTKPYTFAVYMGKEAKFTQDKIEGVKTINLRFSTGDTMLAIRFYNGVLRFKRDNQKHLIGDTLFVIDLIREEKEKPITGVFKTLSPVVVERMGFTNSRDPEERYITPDEEGFQESFIENTLRRYYDVKGFPGNFGNFSLRVLEYKKEYVKHYGGVVKCFIGKFIVMSDNKEIQEFIYKYGAGLRTGQGFGYLEVEEWKS
>NC_013894.1|WP_012991051.1|4397_5501_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MEKLTSLEYTLEFVTPAFIGGADPEKAELRPASIVGMLRWWFRVLVGAFVESIEELFQLESELFGNQDKAGKIWVRVLEYPAPKSIETKTKDKDYNYLLGLSKRGKGFDKGEKVKLRILTPDNLKELTEFLVRFAFTFGNLGNRARKGFGSLDFSQGDLLIDPTKDLSIEKLKEILRPLMKEEDLTFHKNSKYPNISNMKVFKKSYRNLDSELSYLSEQYRNFRAPSGLTEEYKKVISLFMDRKPISDRDVVSVFKNHMFGLPIMFFSRKRNAKVMLSWTSEGQNGRKVGDRRRAAPFWISFKREKIYITLFRSSFLPEGSKIVLQPKGRHGNKKQFEETFPEDYDYLERFFKKIGFEEVFDGGSLK
>NC_013894.1|WP_012991052.1|5497_7357_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSYLLIFTFSPVQGFISTSRRTRDLFTGSLILSHLTEKLLDYLSSLSSKGNVKVIYPFRSEKEDSQETLANFPNRLVAKVEDEKLCKELKKKFYQEWKKLWSKTWEGIKKEAKDRKALDGAEEQFKLHVKNYFFCFCIKESMEGKSYAEVYDSAERKLGAVKSWRPYRGLKDYSTLEEDGKRIYPDGCTMCGERPHLAINWKKKDEIFGKSIASHIRDSEKLCGVCLVKRFAVKFCAEDLGLGEDKWNYPSTEEIAGIKFKEYLIKKVEEHPDIKEKLKKLSEKLKETPYYVRTLPLKVTDEQKEYLSFDSELLREEAWDALFQEEGLKELKKDLEDLYEQLKNLGLEHKNPYFAIMLSDGDSIGAWLGKNSSIRKEELNEEFHTEFSKRLSNYAKRVVEEPYPFRQVIYAGGDDLLALLHPHDAIFYARKCAQIFEEQLKSLAKEGGKPSVSAGILVAHAKTNFQMLLEKVRFLESKAKSVKGKGAVCMGFMTRTGDITYFVAKWDHLELYDELFKAFREKALSSRIVYDLRILSEVFNGEKEIDIITPLIKRSFKRHVNDKNNELVQKLSDISLKFIKETLDYWDTSDEEEKMRRSVNNYLNLLYVVRTVGVRIEEV
>NC_013894.1|WP_012991053.1|7358_8357_+|CRISPR-associated-protein,-Cmr3
MRLVKIRGYNAFWFGGLKHFTEEEHYLPRIQLPNIMRTFRLLKKGTPCYGVFFWKEEEKDIFFPVPADVVGVRKKKRFESGDLRIAYYNGRIPEIDDKEKAYETLEQYFISSEKLSIGWAKGKQDSLEVFGAEEFFVAEDKVGLKLNKDRMSGEEKMLYFHKRMRLKKGVSLCFLAKELDDSAKRFFGGERNPVEIEESTDLPQHFKELLKERSVKRDKQYKFYTLTHTFVEGGLMKEEDEKILLVFRDEEGREVKFQLLWLFSRGSELISGRGKPALEMLKPGAVMILKAMEDAESFGSLCQIKSHPEGFNTFLERGWNTGILVEDIKGGN
>NC_013894.1|WP_012991054.1|8358_9279_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MRKELYYLKVLTPLHVGTGQGMDHIDLPIYREAHTGFPAIPSSAIKGTLRTEEIKKLYMKKKQTNKELKLSEIEEQLDGFDPEDTKTEEDDDIKRLAKIFGSKKVEGEVVFTDARILLFPVKSLKGIYALITCPYVLERFAEESGKEKPHIDDLSESSCIVFKDSRNTINIKDKKAVVLEEFAFEVKREVEDDSKNTIAHLLQDPNIDKKRVVIVSDDVFTHMVKSFTEVQTHIKVDIEKGTVEEGALWTEEYVPSEAIFYFWIINYRDEEFSIENGENKKVLQLGGNTSTGKGFVEVWNDGSQKS
>NC_013894.1|WP_012991055.1|9256_9640_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MMAVKNLEQERMRIAYESVMRVKGENFESKYSILAKRLPAMISHNGLLTTLAFLKSKGKDEHKRLIEDICKYLSHRFGNEIRSYKELISMLFQADTTMYLFYTREVLSFAVWLKRIAEGELKSEREG

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Crispr_ID: NC_013894_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013894_2

177442-180135

Unclear

Consensus_repeat	Method
CTTTCAACTCCACACGGTACATTAGAAAC	CRISPRCasFinder
CTTTCAACTCCACACGGTACATTAGAAAC	CRT
CTTTCAACTCCACACGGTACATTAGAAAC	PILER-CR

40 spacers

cas3

The CRISPR arrays of NC_013894_2

>merge|NC_013894|2|177442-180135|CRISPRCasFinder,CRT,PILER-CR
TTTTCAACTCCACACGGTACGTTAGAAACTAGCTCTTGCAAGTTCAGATTTTCTTTGAAACTCAAACTTTCAACTCCACACGGTACATTAGAAACACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTACCTTTCAACTCCACACGGTACATTAGAAACTCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCATCTTTCAACTCCACACGGTACATTAGAAACTAGAAGATGATGAAAACTCGTTCCCTGTTGTCTCCCCTTTCAACTCCACACGGTACATTAGAAACCTGACTATAAAAACTTTTTCGTTGCTCAAATCATAACTTTCAACTCCACACGGTACATTAGAAACACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTACCTTTCAACTCCACACGGTACATTAGAAACTCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCATCTTTCAACTCCACACGGTACATTAGAAACCTCCACAGCTATGAAGCGTATGAGAAGTTAATGGATCTGAAGCTTTCAACTCCACACGGTACATTAGAAACCATGCGTGAGAGACTTATCTATGTAATTTATCCCCTCACTTTCAACTCCACACGGTACATTAGAAACAAGAAAACACGTTCTCCAAAGCTCCCGCCACTTCCTGCTTTCAACTCCACACGGTACATTAGAAACGGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTGCTTTCAACTCCACACGGTACATTAGAAACAGCCTAAAAGTCAGATGATTGGCACGATGTTTGCTATCTTTCAACTCCACACGGTACATTAGAAACACCCAGTGAAGGAAGTCCCCGTGTCAAAACTACTCCCATCTTTCAACTCCACACGGTACATTAGAAACAATACTAGACAAGGATGAAATCCGTAAGGCACTAAAGCTCTTTCAACTCCACACGGTACATTAGAAACGGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTGCTTTCAACTCCACACGGTACATTAGAAACTTTAACTATGAGCCTGTCGCATATTTCCTTGAGCATCCTTTCAACTCCACACGGTACATTAGAAACTGTCCACAATCTTCACTATCTGCGTTGGAATCACCTTCTTTCAACTCCACACGGTACATTAGAAACCCGTACACCGCTACCCGTAGTTCCTTACCCCAATGAGACTTTCAACTCCACACGGTACATTAGAAACAGGGACGTTTTTGTTGCGTGCGTGCGTGCGTGCCTTTCAACTCCACACGGTACATTAGAAACAAGGGCTTAATGCTATTAAATTCGGTCAAGGATAAAACTTTCAACTCCACACGGTACATTAGAAACCCTTTTAGGGACATCCCTCATGCCTTCTATGTCAAGCCTATGCTTTCAACTCCACACGGTACATTAGAAACAGAAATACATGTACTGCTGTTATGACAGTGTGTTTGCACTTTCAACTCCACACGGTACATTAGAAACCCATGATCACGGTGAGAGTTCTTGAAAAGAATAATGACTTTCAACTCCACACGGTACATTAGAAACGTGAAGATAGATAGCCCCGATGAGGCTCTGGATGCTTTCTTTCAACTCCACACGGTACATTAGAAACGACAGGTTCAAACTCCCACGACCTCATGGCTAAATACTGTCTTTCAACTCCACACGGTACATTAGAAACAGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGACTTTCAACTCCACACGGTACATTAGAAACAGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGACTTTCAACTCCACACGGTACATTAGAAACTCTTGATAGTGTTCCAACTCCTTGCCCGCCTTGAGGAGCTTTCAACTCCACACGGTACATTAGAAACTGTAATCTTGTCAATGCTTTCTTGATAAGATTTGACACTTTCAACTCCACACGGTACATTAGAAACTGCTTCCATAATGGTTATATGATTTTTACAATCAATAACCTTTCAACTCCACACGGTACATTAGAAACAAACGTCAGGTCTTTCGCTCAGTTATCATTACATTTACCTTTCAACTCCACACGGTACATTAGAAACACATCTACATAGTTCTTGCTGATTACATGCTTCCTTATTTTCCTTTCAACTCCACACGGTACATTAGAAACATTCCTCATAGAGGCTTTTCACCTCCTGAGGAATTTCCTTTCAACTCCACACGGTACATTAGAAACTGAATATGTGCCAGAAGACTCCGACGGCAAAAAACTCCTTTCAACTCCACACGGTACATTAGAAACTTTAGCCAGTCCTTGAATGGTAATGTTCTTAAATAGCTTTCAACTCCACACGGTACATTAGAAACAAGTATTAACTTCTTTAGCTTTTTGAGAGCAAGCTTGCTTTCAACTCCACACGGTACATTAGAAACGGTATGTTAATTGGAGGAATGGGTGGTGGCATGATGGGCTTTCAACTCCACACGGTACATTAGAAACCATCTTTTCTGCAAAAGACAGAGCAAGGGCATACATAGACTTTCAACTCCACACGGTACATTAGAAACCGAGGTAAAAGAACTGCTTGTCATAAGAAAGATAATGCTTTCAACTCCACACGGTACATTAGAAACGATATCTTTTTCAAAACAGATGAGAAATACCAACATCTTTCAACTCCACACGGTACATTAGAAAC

>NC_013894|2|2|177442-180135|CRISPRCasFinder
TTTTCAACTCCACACGGTACGTTAGAAAC	TAGCTCTTGCAAGTTCAGATTTTCTTTGAAACTCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	ACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC
CTTTCAACTCCACACGGTACATTAGAAAC	TCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT
CTTTCAACTCCACACGGTACATTAGAAAC	TAGAAGATGATGAAAACTCGTTCCCTGTTGTCTCCC
CTTTCAACTCCACACGGTACATTAGAAAC	CTGACTATAAAAACTTTTTCGTTGCTCAAATCATAA
CTTTCAACTCCACACGGTACATTAGAAAC	ACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC
CTTTCAACTCCACACGGTACATTAGAAAC	TCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT
CTTTCAACTCCACACGGTACATTAGAAAC	CTCCACAGCTATGAAGCGTATGAGAAGTTAATGGATCTGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	CATGCGTGAGAGACTTATCTATGTAATTTATCCCCTCA
CTTTCAACTCCACACGGTACATTAGAAAC	AAGAAAACACGTTCTCCAAAGCTCCCGCCACTTCCTG
CTTTCAACTCCACACGGTACATTAGAAAC	GGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG
CTTTCAACTCCACACGGTACATTAGAAAC	AGCCTAAAAGTCAGATGATTGGCACGATGTTTGCTAT
CTTTCAACTCCACACGGTACATTAGAAAC	ACCCAGTGAAGGAAGTCCCCGTGTCAAAACTACTCCCAT
CTTTCAACTCCACACGGTACATTAGAAAC	AATACTAGACAAGGATGAAATCCGTAAGGCACTAAAGCT
CTTTCAACTCCACACGGTACATTAGAAAC	GGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG
CTTTCAACTCCACACGGTACATTAGAAAC	TTTAACTATGAGCCTGTCGCATATTTCCTTGAGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TGTCCACAATCTTCACTATCTGCGTTGGAATCACCTT
CTTTCAACTCCACACGGTACATTAGAAAC	CCGTACACCGCTACCCGTAGTTCCTTACCCCAATGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	AGGGACGTTTTTGTTGCGTGCGTGCGTGCGTGC
CTTTCAACTCCACACGGTACATTAGAAAC	AAGGGCTTAATGCTATTAAATTCGGTCAAGGATAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTTTAGGGACATCCCTCATGCCTTCTATGTCAAGCCTATG
CTTTCAACTCCACACGGTACATTAGAAAC	AGAAATACATGTACTGCTGTTATGACAGTGTGTTTGCA
CTTTCAACTCCACACGGTACATTAGAAAC	CCATGATCACGGTGAGAGTTCTTGAAAAGAATAATGA
CTTTCAACTCCACACGGTACATTAGAAAC	GTGAAGATAGATAGCCCCGATGAGGCTCTGGATGCTTT
CTTTCAACTCCACACGGTACATTAGAAAC	GACAGGTTCAAACTCCCACGACCTCATGGCTAAATACTGT
CTTTCAACTCCACACGGTACATTAGAAAC	AGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	AGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	TCTTGATAGTGTTCCAACTCCTTGCCCGCCTTGAGGAG
CTTTCAACTCCACACGGTACATTAGAAAC	TGTAATCTTGTCAATGCTTTCTTGATAAGATTTGACA
CTTTCAACTCCACACGGTACATTAGAAAC	TGCTTCCATAATGGTTATATGATTTTTACAATCAATAAC
CTTTCAACTCCACACGGTACATTAGAAAC	AAACGTCAGGTCTTTCGCTCAGTTATCATTACATTTAC
CTTTCAACTCCACACGGTACATTAGAAAC	ACATCTACATAGTTCTTGCTGATTACATGCTTCCTTATTTTC
CTTTCAACTCCACACGGTACATTAGAAAC	ATTCCTCATAGAGGCTTTTCACCTCCTGAGGAATTTC
CTTTCAACTCCACACGGTACATTAGAAAC	TGAATATGTGCCAGAAGACTCCGACGGCAAAAAACTC
CTTTCAACTCCACACGGTACATTAGAAAC	TTTAGCCAGTCCTTGAATGGTAATGTTCTTAAATAG
CTTTCAACTCCACACGGTACATTAGAAAC	AAGTATTAACTTCTTTAGCTTTTTGAGAGCAAGCTTG
CTTTCAACTCCACACGGTACATTAGAAAC	GGTATGTTAATTGGAGGAATGGGTGGTGGCATGATGGG
CTTTCAACTCCACACGGTACATTAGAAAC	CATCTTTTCTGCAAAAGACAGAGCAAGGGCATACATAGA
CTTTCAACTCCACACGGTACATTAGAAAC	CGAGGTAAAAGAACTGCTTGTCATAAGAAAGATAATG
CTTTCAACTCCACACGGTACATTAGAAAC	GATATCTTTTTCAAAACAGATGAGAAATACCAACAT
CTTTCAACTCCACACGGTACATTAGAAAC

>NC_013894|2|1|177442-180135|CRT
TTTTCAACTCCACACGGTACGTTAGAAAC	TAGCTCTTGCAAGTTCAGATTTTCTTTGAAACTCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	ACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC
CTTTCAACTCCACACGGTACATTAGAAAC	TCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT
CTTTCAACTCCACACGGTACATTAGAAAC	TAGAAGATGATGAAAACTCGTTCCCTGTTGTCTCCC
CTTTCAACTCCACACGGTACATTAGAAAC	CTGACTATAAAAACTTTTTCGTTGCTCAAATCATAA
CTTTCAACTCCACACGGTACATTAGAAAC	ACAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTAC
CTTTCAACTCCACACGGTACATTAGAAAC	TCTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCAT
CTTTCAACTCCACACGGTACATTAGAAAC	CTCCACAGCTATGAAGCGTATGAGAAGTTAATGGATCTGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	CATGCGTGAGAGACTTATCTATGTAATTTATCCCCTCA
CTTTCAACTCCACACGGTACATTAGAAAC	AAGAAAACACGTTCTCCAAAGCTCCCGCCACTTCCTG
CTTTCAACTCCACACGGTACATTAGAAAC	GGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG
CTTTCAACTCCACACGGTACATTAGAAAC	AGCCTAAAAGTCAGATGATTGGCACGATGTTTGCTAT
CTTTCAACTCCACACGGTACATTAGAAAC	ACCCAGTGAAGGAAGTCCCCGTGTCAAAACTACTCCCAT
CTTTCAACTCCACACGGTACATTAGAAAC	AATACTAGACAAGGATGAAATCCGTAAGGCACTAAAGCT
CTTTCAACTCCACACGGTACATTAGAAAC	GGGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTG
CTTTCAACTCCACACGGTACATTAGAAAC	TTTAACTATGAGCCTGTCGCATATTTCCTTGAGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TGTCCACAATCTTCACTATCTGCGTTGGAATCACCTT
CTTTCAACTCCACACGGTACATTAGAAAC	CCGTACACCGCTACCCGTAGTTCCTTACCCCAATGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	AGGGACGTTTTTGTTGCGTGCGTGCGTGCGTGC
CTTTCAACTCCACACGGTACATTAGAAAC	AAGGGCTTAATGCTATTAAATTCGGTCAAGGATAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTTTAGGGACATCCCTCATGCCTTCTATGTCAAGCCTATG
CTTTCAACTCCACACGGTACATTAGAAAC	AGAAATACATGTACTGCTGTTATGACAGTGTGTTTGCA
CTTTCAACTCCACACGGTACATTAGAAAC	CCATGATCACGGTGAGAGTTCTTGAAAAGAATAATGA
CTTTCAACTCCACACGGTACATTAGAAAC	GTGAAGATAGATAGCCCCGATGAGGCTCTGGATGCTTT
CTTTCAACTCCACACGGTACATTAGAAAC	GACAGGTTCAAACTCCCACGACCTCATGGCTAAATACTGT
CTTTCAACTCCACACGGTACATTAGAAAC	AGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	AGTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	TCTTGATAGTGTTCCAACTCCTTGCCCGCCTTGAGGAG
CTTTCAACTCCACACGGTACATTAGAAAC	TGTAATCTTGTCAATGCTTTCTTGATAAGATTTGACA
CTTTCAACTCCACACGGTACATTAGAAAC	TGCTTCCATAATGGTTATATGATTTTTACAATCAATAAC
CTTTCAACTCCACACGGTACATTAGAAAC	AAACGTCAGGTCTTTCGCTCAGTTATCATTACATTTAC
CTTTCAACTCCACACGGTACATTAGAAAC	ACATCTACATAGTTCTTGCTGATTACATGCTTCCTTATTTTC
CTTTCAACTCCACACGGTACATTAGAAAC	ATTCCTCATAGAGGCTTTTCACCTCCTGAGGAATTTC
CTTTCAACTCCACACGGTACATTAGAAAC	TGAATATGTGCCAGAAGACTCCGACGGCAAAAAACTC
CTTTCAACTCCACACGGTACATTAGAAAC	TTTAGCCAGTCCTTGAATGGTAATGTTCTTAAATAG
CTTTCAACTCCACACGGTACATTAGAAAC	AAGTATTAACTTCTTTAGCTTTTTGAGAGCAAGCTTG
CTTTCAACTCCACACGGTACATTAGAAAC	GGTATGTTAATTGGAGGAATGGGTGGTGGCATGATGGG
CTTTCAACTCCACACGGTACATTAGAAAC	CATCTTTTCTGCAAAAGACAGAGCAAGGGCATACATAGA
CTTTCAACTCCACACGGTACATTAGAAAC	CGAGGTAAAAGAACTGCTTGTCATAAGAAAGATAATG
CTTTCAACTCCACACGGTACATTAGAAAC	GATATCTTTTTCAAAACAGATGAGAAATACCAACAT
CTTTCAACTCCACACGGTACATTAGAAAC

>NC_013894|2|1|177443-180135|PILER-CR
TTTCAACTCCACACGGTACGTTAGAAACT	AGCTCTTGCAAGTTCAGATTTTCTTTGAAACTCAAAC
TTTCAACTCCACACGGTACATTAGAAACA	CAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTACC
TTTCAACTCCACACGGTACATTAGAAACT	CTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCATC
TTTCAACTCCACACGGTACATTAGAAACT	AGAAGATGATGAAAACTCGTTCCCTGTTGTCTCCCC
TTTCAACTCCACACGGTACATTAGAAACC	TGACTATAAAAACTTTTTCGTTGCTCAAATCATAAC
TTTCAACTCCACACGGTACATTAGAAACA	CAGAGAGGTCTTAGTAAATTCTGGGCTGAACGTTACC
TTTCAACTCCACACGGTACATTAGAAACT	CTCCCCGTAAAGCGGATACTTCATCTGTCAGAGCATC
TTTCAACTCCACACGGTACATTAGAAACC	TCCACAGCTATGAAGCGTATGAGAAGTTAATGGATCTGAAGC
TTTCAACTCCACACGGTACATTAGAAACC	ATGCGTGAGAGACTTATCTATGTAATTTATCCCCTCAC
TTTCAACTCCACACGGTACATTAGAAACA	AGAAAACACGTTCTCCAAAGCTCCCGCCACTTCCTGC
TTTCAACTCCACACGGTACATTAGAAACG	GGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTGC
TTTCAACTCCACACGGTACATTAGAAACA	GCCTAAAAGTCAGATGATTGGCACGATGTTTGCTATC
TTTCAACTCCACACGGTACATTAGAAACA	CCCAGTGAAGGAAGTCCCCGTGTCAAAACTACTCCCATC
TTTCAACTCCACACGGTACATTAGAAACA	ATACTAGACAAGGATGAAATCCGTAAGGCACTAAAGCTC
TTTCAACTCCACACGGTACATTAGAAACG	GGGCAGTTTAGGAGCTTCGGCGGGTTGGGTAGTTTGC
TTTCAACTCCACACGGTACATTAGAAACT	TTAACTATGAGCCTGTCGCATATTTCCTTGAGCATCC
TTTCAACTCCACACGGTACATTAGAAACT	GTCCACAATCTTCACTATCTGCGTTGGAATCACCTTC
TTTCAACTCCACACGGTACATTAGAAACC	CGTACACCGCTACCCGTAGTTCCTTACCCCAATGAGAC
TTTCAACTCCACACGGTACATTAGAAACA	GGGACGTTTTTGTTGCGTGCGTGCGTGCGTGCC
TTTCAACTCCACACGGTACATTAGAAACA	AGGGCTTAATGCTATTAAATTCGGTCAAGGATAAAAC
TTTCAACTCCACACGGTACATTAGAAACC	CTTTTAGGGACATCCCTCATGCCTTCTATGTCAAGCCTATGC
TTTCAACTCCACACGGTACATTAGAAACA	GAAATACATGTACTGCTGTTATGACAGTGTGTTTGCAC
TTTCAACTCCACACGGTACATTAGAAACC	CATGATCACGGTGAGAGTTCTTGAAAAGAATAATGAC
TTTCAACTCCACACGGTACATTAGAAACG	TGAAGATAGATAGCCCCGATGAGGCTCTGGATGCTTTC
TTTCAACTCCACACGGTACATTAGAAACG	ACAGGTTCAAACTCCCACGACCTCATGGCTAAATACTGTC
TTTCAACTCCACACGGTACATTAGAAACA	GTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGAC
TTTCAACTCCACACGGTACATTAGAAACA	GTGGTCAGGGAGGAGTTTGACCCCAGACAACTGAGAC
TTTCAACTCCACACGGTACATTAGAAACT	CTTGATAGTGTTCCAACTCCTTGCCCGCCTTGAGGAGC
TTTCAACTCCACACGGTACATTAGAAACT	GTAATCTTGTCAATGCTTTCTTGATAAGATTTGACAC
TTTCAACTCCACACGGTACATTAGAAACT	GCTTCCATAATGGTTATATGATTTTTACAATCAATAACC
TTTCAACTCCACACGGTACATTAGAAACA	AACGTCAGGTCTTTCGCTCAGTTATCATTACATTTACC
TTTCAACTCCACACGGTACATTAGAAACA	CATCTACATAGTTCTTGCTGATTACATGCTTCCTTATTTTCC
TTTCAACTCCACACGGTACATTAGAAACA	TTCCTCATAGAGGCTTTTCACCTCCTGAGGAATTTCC
TTTCAACTCCACACGGTACATTAGAAACT	GAATATGTGCCAGAAGACTCCGACGGCAAAAAACTCC
TTTCAACTCCACACGGTACATTAGAAACT	TTAGCCAGTCCTTGAATGGTAATGTTCTTAAATAGC
TTTCAACTCCACACGGTACATTAGAAACA	AGTATTAACTTCTTTAGCTTTTTGAGAGCAAGCTTGC
TTTCAACTCCACACGGTACATTAGAAACG	GTATGTTAATTGGAGGAATGGGTGGTGGCATGATGGGC
TTTCAACTCCACACGGTACATTAGAAACC	ATCTTTTCTGCAAAAGACAGAGCAAGGGCATACATAGAC
TTTCAACTCCACACGGTACATTAGAAACC	GAGGTAAAAGAACTGCTTGTCATAAGAAAGATAATGC
TTTCAACTCCACACGGTACATTAGAAACG	ATATCTTTTTCAAAACAGATGAGAAATACCAACATC
TTTCAACTCCACACGGTACATTAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013894.1\|WP_148209113.1\|174560_175049_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012991226.1\|169891_170371_-\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|224317
NC_013894.1\|WP_012991243.1\|188575_189874_-\|succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|223123
NC_013894.1\|WP_012991233.1\|175974_176700_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|211337
NC_013894.1\|WP_041434049.1\|182542_183298_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012991225.1\|168606_169863_-\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|235488
NC_013894.1\|WP_012991242.1\|187547_188573_-\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|223152
NC_013894.1\|WP_012991236.1\|180499_181081_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_013894.1\|WP_041434148.1\|175020_175245_+\|DUF167-domain-containing-protein	unknown	unknown	gnl\|CDD\|376843
NC_013894.1\|WP_012991241.1\|186081_187551_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NC_013894.1\|WP_041434149.1\|189964_191977_+\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|225127
NC_013894.1\|WP_012991235.1\|180325_180472_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012991232.1\|175265_175982_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NC_013894.1\|WP_012991227.1\|170395_171388_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NC_013894.1\|WP_041434046.1\|171365_172877_+\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|223108
NC_013894.1\|WP_012991239.1\|183285_185637_-\|ATP-dependent-DNA-helicase-RecG	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|236794
NC_013894.1\|WP_012991237.1\|181077_182508_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NC_013894.1\|WP_012991234.1\|176784_177231_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274229
NC_013894.1\|WP_012991240.1\|185614_186085_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_013894.1\|WP_012991229.1\|172879_174577_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|237783

Protein	Function_ID	Function_description	E-value
NC_013894.1\|WP_012991226.1\|169891_170371_-\|DUF177-domain-containing-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	1.1135e-25
NC_013894.1\|WP_012991243.1\|188575_189874_-\|succinate--CoA-ligase-subunit-beta	gnl\|CDD\|223123	COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion].	3.21934e-121
NC_013894.1\|WP_012991233.1\|175974_176700_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	4.97339e-100
NC_013894.1\|WP_012991241.1\|186081_187551_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NC_013894.1\|WP_012991225.1\|168606_169863_-\|adenosylhomocysteinase	gnl\|CDD\|235488	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional.	0
NC_013894.1\|WP_012991242.1\|187547_188573_-\|CoA-binding-protein	gnl\|CDD\|223152	COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion].	5.5171e-104
NC_013894.1\|WP_012991236.1\|180499_181081_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	2.77021e-67
NC_013894.1\|WP_041434148.1\|175020_175245_+\|DUF167-domain-containing-protein	gnl\|CDD\|376843	pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872.	3.92521e-23
NC_013894.1\|WP_041434149.1\|189964_191977_+\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NC_013894.1\|WP_012991232.1\|175265_175982_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.06561e-45
NC_013894.1\|WP_012991227.1\|170395_171388_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.12752e-135
NC_013894.1\|WP_041434046.1\|171365_172877_+\|L-aspartate-oxidase	gnl\|CDD\|223108	COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].	0
NC_013894.1\|WP_012991239.1\|183285_185637_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_013894.1\|WP_012991237.1\|181077_182508_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	1.05481e-32
NC_013894.1\|WP_012991234.1\|176784_177231_+\|hypothetical-protein	gnl\|CDD\|274229	TIGR02608, hypothetical_protein, delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.	3.7715e-19
NC_013894.1\|WP_012991240.1\|185614_186085_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.40166e-55
NC_013894.1\|WP_012991229.1\|172879_174577_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|237783	PRK14667, uvrC, excinuclease ABC subunit C; Provisional.	0

>NC_013894.1|WP_012991234.1|176784_177231_+|hypothetical-protein
MKRYVGYFVFGLIAMGIVFSGYGGGGGGGGRVITAPSGSLDTTFGRGGIVTTDIGTNREDEAKALAIQSDGKIVVVGYSYNGTNTDFAVVRYNPDGSLDTSFGTNGIVTTDIGTNSEDKAYALAIQRDGKIVVAGTSDGDFAIVRYWP
>NC_013894.1|WP_012991233.1|175974_176700_+|tRNA-pseudouridine(38-40)-synthase-TruA
MFNYGLILSFVGTHFHGWQIQPSLRTVQGELSSCLSKIFDRTIKPIGCCRTDAGVHAKEYAANFKAPTFIEPDKLLKALNSLLPHDIGVKKVWLAEEKWNSRYSIKGKTYVYRIHMSHARDPFLEPFVWRIPYTLQVDKMREISQLLVGTHDFSGFSKKEDDKNPIIDLEELVLLQEGDILILSFRARRFLRYMVRRMVGALVQVGLEKIGKEEIERYLSGENCPYTAPAKGLTLEKIHFS
>NC_013894.1|WP_012991232.1|175265_175982_+|serine/threonine-protein-phosphatase
MVVYFYTHRGKQRTNNEDALLVNGRVFQTEAMDVVQSENFQGGWLVVADGLGGHARGEVASRIVLEILQERNPQDKESLMSTLWEAKDVLLEYARQHPQAYGLGTALAGFLVREEDVLVFNVGDCRVYGYSKGWVRLTKDHTVVEDLIDKGQLTPQEAKNHPRRHILTSALTGDMSDFEIYIRQVDIPVALLACSDGFWEEMEDDLNACGTDVNLIMEVLKEKPQKDNVSFLLLKRNV
>NC_013894.1|WP_041434148.1|175020_175245_+|DUF167-domain-containing-protein
MVIHVKAKPKASKEYVKELSPNFYEVAVKEPPEDGKANERILELLSKHLKVPKSRIKLLRGTSSRIKVFCISQL
>NC_013894.1|WP_148209113.1|174560_175049_+|hypothetical-protein
MIKGVNFPSYVFASLVAGYVMMGVDIMLEGFLGLFGSYRQYVEIVSYTGLFRGYEDLAMVIGHTFNSMIFAIFFVTPQVYHRLPSPWGAVKGLFFGICWHALALAFLVITSLLGARMSELMLPHHLHQHLTLLLLHVVWGVTLGALYNLKDDNDSYTRESKT
>NC_013894.1|WP_012991229.1|172879_174577_+|excinuclease-ABC-subunit-UvrC
MIDLETLKRAPESCGVYLFQRKGRPIYIGKAKNIKERLLQHYRASTSDPREKAILEQADSVDWFITRNEFEALTLEIDLIQTHKPKYNILHKYGAGYPMLLITEDPFPTLRVVRGAHHRGKLFGPFFTASKAYKVKRLVHSLFKLRTCDPMPIRKEPCMDYHLGLCSGPCCGKIDREDYLLSVMSAESMLSGEVGEVLPLLYQRIDQLMVNMEFEKCAVIRDQIQALERLGQGQKVSPLPYASADVFYRMGNVVGIFLIRSHKLVDKQIHTLESESQLEEMLAGFYYANVLPQVLLVNFPISEELIQWLQKRGACKILPLEDPELEKLLRENVGAAVPYQVLREEFLKTLSVPLPEVIEGFDVSHFYGEYVVGSCVVWEKGFMNKKRYRRYRIKSFEGINDYMALEEILSRRARRLKEGEEKMPDIWLIDGGVGQLNVGIRVRDRWDLPIKVMALAKEEELLITEDGRKIPLKENPLLYKVFGLIRDEAHRFALSYNRQLRLKNALTDILDKVKGIGEVKKRIIYRNFDNLYEFLQADPNYLKQLGIDPSLKQEVEKYLAGDKGS
>NC_013894.1|WP_041434046.1|171365_172877_+|L-aspartate-oxidase
MTYFMNFDTSLLPEEREEILICGSGIAGLVCAITLAELGREPLLLTRGLGNTYYSQGGVACAFHPKDSTYLHFMDTVKAGRGLCHHQAVTTMVEEGVQRIGDLIRWGVTFDAETTTEGGHSFPRVLKVKDYTGRAIYQVLWKKVQELGIRVLRGELVEILGDDKVEGVLYVEDGSIRFLRVKAVVLATGGAASLYLHTSNPSPTRGDAIGIAIRKGIPLVNPEFVQFHPTVLDGTSFLISEAVRGEGATLIDERGERFVDELLPRDQVARAIYRKLKEGHRVFLDMRPIVGKGVNIEERFPTIVSYLREKGIDPLKDPIPVVPAAHYYIGGLEVDLWGRTRLPGLYAVGEVACTGVHGANRLASNSLLEGLVFGFRVAHRVLHDLSTLTFSSSSFRNMHEGKEEPPFTLTHLKELMWEYCGLERDEEGLKHAIGILTEWLHSWKSWRRTPENRALLDISLTALGTLQGALNRRESRGVHFRKDYPYQDDRYRKDTLISVGLNW
>NC_013894.1|WP_012991227.1|170395_171388_+|YvcK-family-protein
MRVVAVGGGTGLSTLLRGLKRYTGEQIKDLSAIVTVADSGGSTGRLRKAYSIPAPGDIRNCLVALSESEEILQALFQYRFKGSELDGHAFGNLFLVALTDITGSFMSAIRIASQILRTKGEIIPATLENVNLCASFEDGTVVKGEEEITKYGRENRKRVKKIWLEPQDVKPPIDAIAKIEAADVLVFGPGSLFTSILPNLLIEDLRDAVKRSLALKVLVVNAMTQPGETDGYTAYDHYRAFLEHSSLEKLDVVVVNTRMPSSHVLKRYVEQGQEPVVPDVAKIAKEGVLVYAEDLIGEKDDFVRHDPERLADLLIRVYQQRVSNDVLYEL
>NC_013894.1|WP_012991226.1|169891_170371_-|DUF177-domain-containing-protein
MVILNLKEIFKRSNRFTGYYRLSPSEIKLPADIGEITKPVEVQVEITKERGGYRLHLHIQGEVTLECSRCLQVYQKDISGQEVIRLERYPEEHVIHIRPQDLNVSFYEDEEAFDLVSLVREQIILSIPTKPLCDPNCEGIPYQKEEESPFASLKNLLKK
>NC_013894.1|WP_012991225.1|168606_169863_-|adenosylhomocysteinase
MEYHVRDLQLAELGKRRIEWAERDMPVLRSIRERFAKEKPFVGVRISACLHVTTETANLMITLKEGGAEVFLTASNPLSTQDDVAAALVHYFGIPVFAIKGEDRDTYYSHLHAVIRKEPHIVIDDGADLISTLHREYPQLAQKILGGMEETTTGVIRLRAMAERGVLLFPVIAVNDAMTKHMFDNRYGTGQSTIDGILRATNRLIAGSTFVVAGYGWCGKGVAQRARGMGATVVVTEVDPIKALEAKMDGFLVMPMIEAAKIGDFFVTVTGNTSVIREEHFKVMKDGAIISNAGHFDVEIDIKALEKLSVGKREVRNFVEEYTLYDGRRIYLLAQGRLVNLASAEGHPASVMDMSFANQALCAEYILKHHSQLERKVYKVPREIDTQVAQLKLASMGVQIDQLTPEQLSYLSSWEIGT
>NC_013894.1|WP_012991235.1|180325_180472_+|hypothetical-protein
MPKSHSCKEIPTLYSVAKITRVLCGPSVLVDIIYQKEEDDKVLLDPLH
>NC_013894.1|WP_012991236.1|180499_181081_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MDSILLVLLAYLYGSVLFGEHIAKWKGVDIRSVGSGNVGATNVARALGKKYALLVFLLDMSKGLVPVWLARFYMGIDSWTVFLVGVASVLGHMYPIFHNWKGGKGVATAFGVLLGISPFLAFLTLLVWLMVFKWKGYVSLASLTACVFAVVFSLFFMPAKIFLLALVITVLIFYRHKDNIKRLMEGRELKVGS
>NC_013894.1|WP_012991237.1|181077_182508_+|glycosyltransferase-family-39-protein
MRGLLFFLSSITFFRILYVIFYPLDLFPEEAQYWDWSRDLDLSYYSKPPMVAYLNFISRTILGNTEIAVRVWPIFFSFLLSVFTYIFVKRLFDEKTALVASVIPQLSVGFSVNSLLMTTDAPFLFFWSLSVMTIYHASEKNSLRLWLLAGFLAGLAFLSKYPAVFLLPCTLLYLLLYRRNVLLSYKPYVALLPAFFLATPVIYWNMKHGMVSFLHVSTLATKGGGSVWEHILEYLGGQMLILSVIPFFFMLMGWLKGWKNSTTAFLSLYSLPVFLFFSMLSLHKRVEANWPGFAYFTGSILASYHLARSRWLVPSFGLSLFLFLFLHFTPLLDVVGLRKILPPQRDPTKMGVGWSLLGDEVSRLYTGEEMVFSPQYQISAELAFYTKGNPRTFCVNLGRRMNQYDLWREGMKNYVGKDAIFVDLKPIDSRVLSGFEGIIEERSLVVKWRGEEVRRFYIYKLRKFNGHMEESMPEGY
>NC_013894.1|WP_041434049.1|182542_183298_+|hypothetical-protein
MYHLYPVSFFSSTNYSPLRPSPIPYSRECRVALGVRTVYNAPLGNPHKLQQELSLLGIHKEVPYQEGYGFEDIGVIRWFSYFLFDFIPSYLLRAEPPDPYQLLPKGDCKPILSDIPVLISVWNWDFPSYSFILGKRYNLLLRCDEEDMSKAVPVVGRNLSVYIYSPKGFFLGDKEVPLQSVLTLNTEGNTLVLVWKNQELWGVYPQSGLSLVLTEEGIYRVEIFSYKLRVWNIFMGLRFVSCLPPFKVQAM
>NC_013894.1|WP_012991239.1|183285_185637_-|ATP-dependent-DNA-helicase-RecG
MERLEKAKDFIKQLEEQNYLRLKRSWGAGMYLFNLLKEYLEPSCLELLKEFDKLPFEKKVAVLRLIKEAIKEPTVPAVSFQNEEKYPLEWFLEPLDKVKGLDFKEKKLLKSLGVEDILSALWFLPVRYEDRRLSTSVRTALPGKRYALKVKVVELREDSSDTYPLRVVCTDGTGYLVLRFRYKDPRVKLRFKPSTQLIVYGRVKEFQGEKYMVHPEILSEEEAGSILPFYNIRTKNEQSLSAKTRHKRVRKAMFHITELAKHMPEYIPREILQKYNFLEIGESFYLTHRPPTGDEETLNSFLAPFQRRLVYDELFIFQLALQLRRSEIRSQKAPTLKEGKEWVEQFVSSLPFELTGAQKRVIQEILTDVEKEVPMSRLLQGDVGSGKTVVAMAISYAFAKEGYQTAVMVPTEILARQHYENFRKFLEPMGVRVGLLTSSVKGRERLSVKYHTARGHLHILIGTHALLQEEVEFNRLGFVVVDEQHRFGVLQRKILLQKGRGFYPHCLVMSATPIPRTLALSLYGDLDVSFLDQMPAGRKPVITTIVFESRTEEMLEVIRRELQAGHRVYVIYPLIEESERLSLKAATTEYERWKNLFPERNVLLLHGKMKDSEKIAIMEEFREKGDILVSTSVVEVGVDVPTATVMVIESAHRFGLSQLHQLRGRVGRSNLTSYCFLVVPDQERYSPAMRRLKVLVSTYDGFKIAEEDMLMRGPGELLGESQSGFFGFRVANFMREQDRRLLELAREDASELIKKDPFLLNHADLRKMVLYRYGDKMDLSHIA
>NC_013894.1|WP_012991240.1|185614_186085_-|nucleoside-deaminase
MKDSHEPFVKACLLEAHRAFRKGEIPVGCVVVKEGRIIARAHNRTIALKDPTAHAEILAIRKALKKLGESFLYGCTLYVTLEPCAMCAYALVLARVDKVIFLAQDEKLGAVMSLYNLLDETAFNHRVRWEFLPVEEAGRLLRDFFKNLRHGKAGEG
>NC_013894.1|WP_012991241.1|186081_187551_-|methionine--tRNA-ligase
MKFYVTTPIYYVNDVPHIGHAYTTVAADTLARFYRMRGYEVFFLTGTDEHGLKIQKTAEEKGVHPKDLADQNASNFMELWRFMNISYDRFIRTTDPDHQEVVREMFQKSWERGDIYLGEYEGWYCVGCEEFKSESELLEGKLCPLHLKPCEYVREPSYFFRLSKYQEALLKLYEEMPDFVRPEHRLREVVSFVSMGLRDLSVTRPASRVRWGIRVPFDEEHTIYVWFDALFNYVSAVRERMHLWPADLHLVGKDILRFHAVYWPAFLMSVGLDIPRTVFAHGWWKVEGQKMSKSLGNVVSPVDLVKEYGLDPVRYFLLRDMPFGDDGDLRRDNILKRINGELANEIGNLVSRVLSMVLKYTQGKATGGKDAQYEKVCGETIKRYEELMGRVDFYNALEEVLKFSSYLNKYVDSKAPWQMAKVGDPSLDDVLYTLVDGCFVVGYLLYPFVPQSMEKLMQAIGIEKLPQQIRPYSFAGYTVREKVNLFPRI
>NC_013894.1|WP_012991242.1|187547_188573_-|CoA-binding-protein
MVGTVYLNDQTRILVMGITGREASQVVTESEALYPGFVVAGVTPGKGGSQVAGKPVYNTVREALQNHPEINTGLVYVPPTSVKDAVIELVDAGIKLIYIITEHVPIRDTVYFYHYAKERGVIIVGPTSLGCIVPRIPARIGAIGGKDPSIAYADGGLVILSKSGGLTTTTAEMFKRRGWGVYMALALGGDVISCTTFADVLEKIADDPNVKGVIIQGEVGGSYEEQAAQTILRLYKEGKWNKPVAAFVAGRFQEKLEGVSFGHAGAIVERGKGKATDKIRAFNEVGKETGLVMVAEFYHDLVHCIEELGVPRDFEDSTPEGRVKPLYSTIDEETCSFKPSV
>NC_013894.1|WP_012991243.1|188575_189874_-|succinate--CoA-ligase-subunit-beta
MNLYEYEAYDKIFKKFGIPVPRYMFADHVNDQLVEFINQLGECVVKSQVLVGKRGKAGAVKVCKNPEEAVETVEALLQYPVYGEMPVGVLVVEKANILKELYASITYSTEVRAPVVTLSLEGGMDIEEVPPEKVRSWVIDPLKGLYPHMVRNYLLELGFPQEYMGVLRELSEVIANMWRAFWESEARLLEINPLAICQVGDKQKVLALDAVVTIDDDASVPPTKIYGVRTALKRPPTEREIQASLIDRDDHRGKAGSYVEMDGDIAMMTFGGGGSTVTIETAYAVGLKPANFTDIGGNPPAEKMYKITRIILSKPGIRGVLVCGGTANNTRIDVTLGEGVANAIRDLYKEGKLDPNWIWVVRRNGPEAEKGLRMLYEAFKECGVKGEIYDSTLPLTEAPIRLKELLDKCQSVAKEKQEDRALTEEQAKDLGV
>NC_013894.1|WP_041434149.1|189964_191977_+|cadmium-translocating-P-type-ATPase
MRLSLKVSGMTCVNCARAIELNLRRLHGVKDVKVSFELGRVWVEIEEELISPQDVVAVIESLGYRVEDSLTGRDFSAVVLALCYILSVPIVFLMFLHQPWSLYLQALLAGVVQLVGGWSFYRSAYLSARAGVGNMDLLVAVGSTTAYLYSLLSLVGFLKAHPMFETSALLITFVRTGKWVEDRFKKRATRKLRDLFGFQTVKVRVLGPKGEEEKSPSEVFKGDRVILRKGDLIPVDGHLQEGTVWLDQSLITGESEPVKMEAGALLLSGSLVVDGYGVMKVEKTFSGSYVSFLIKLVEKALSEKPNIQRISDKIAHYFVQGVLILALLVFAFWMWRTHDLERSLTYALAVVVVSCPCAFGIAVPLAIVVGLSRAYSRGILIKEPSIFEREVDVVFLDKTGTVTEGKPKVVKVRVRDEEALRVAHALSSLSNHPYSKAIREYTANLGISADPPSHCKEVVGVGILCDEYALKGKENGWVAIYRGEEVLAEFYVEDTLREDAPQAVDQLKRMGLKVVMLTGDREERAKSISDALGIEEWYASVKPEDKMQVLEEYQKRGYRVCMVGDGINDAPALAKADMSVAMGSGTEVAKLVGDVVLLGGIGGLVELFRIKKTVSRRIKQNLFWAFSYNVLLIPVAAGGLASFGISLKPEWAGLLMVLSSVAVVINSVRP

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Crispr_ID: NC_013894_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013894_3

246542-250335

Orphan

Consensus_repeat	Method
CTTTCAACTCCACACGGTACATTAGAAAC	PILER-CR
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CRISPRCasFinder
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CRT
CTTTCAACTCCACACGGTACATTAGAAAC	PILER-CR
CTTTCAACTCCACACGGTACATTAGAAAC	PILER-CR
TTTCAACTCCACACGGTACATTAGAAAC	PILER-CR

56 spacers

The CRISPR arrays of NC_013894_3

>merge|NC_013894|3|246542-250335|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
GTTTCTAATGTACCGTGTGGAGTTGAAAGTTTACTAAATGGGCACTCTGCACAATACTGTGCAGGGGTTTCTAATGTACCGTGTGGAGTTGAAAGAGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTTGTTTCTAATGTACCGTGTGGAGTTGAAAGGTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGTGTTTCTAATGTACCGTGTGGAGTTGAAAGTTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCACGTTTCTAATGTACCGTGTGGAGTTGAAAGCTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCTGTTTCTAATGTACCGTGTGGAGTTGAAAGTGATCTTGGATACAATCATGAGAACGCTGTAATACTGTTTCTAATGTACCGTGTGGAGTTGAAAGTCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATCGTTTCTAATGTACCGTGTGGAGTTGAAAGAATCTGAAAGCTTCACACCTACCACCGTAGTAGCTCGTTTCTAATGTACCGTGTGGAGTTGAAAGTATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTAGTTTCTAATGTACCGTGTGGAGTTGAAAGCCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTCGTTTCTAATGTACCGTGTGGAGTTGAAAGTGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAGGTTTCTAATGTACCGTGTGGAGTTGAAAGAACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATAGTTTCTAATGTACCGTGTGGAGTTGAAAGAAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCGGTTTCTAATGTACCGTGTGGAGTTGAAAGGATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTAGTTTCTAATGTACCGTGTGGAGTTGAAAGCGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGCGTTTCTAATGTACCGTGTGGAGTTGAAAGTCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCCGTTTCTAATGTACCGTGTGGAGTTGAAAGTGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCATGTTTCTAATGTACCGTGTGGAGTTGAAAGGAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTTGTTTCTAATGTACCGTGTGGAGTTGAAAGTTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGAGTTTCTAATGTACCGTGTGGAGTTGAAAGGAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGAGTTTCTAATGTACCGTGTGGAGTTGAAAGGATAGAACATTAGAGGATAGGATCAACAGAATGGTGAGTTTCTAATGTACCGTGTGGAGTTGAAAGGTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCTGTTTCTAATGTACCGTGTGGAGTTGAAAGGTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAAGTTTCTAATGTACCGTGTGGAGTTGAAAGTACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATAGTTTCTAATGTACCGTGTGGAGTTGAAAGCAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATGGTTTCTAATGTACCGTGTGGAGTTGAAAGAGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTTGTTTCTAATGTACCGTGTGGAGTTGAAAGTTCTGAACATCCAGAGCTTGCCAAACATCAAAACGATGTTTCTAATGTACCGTGTGGAGTTGAAAGCATTAACAGAACCAACGAGATAACCCGCCAGACTCTGTTTCTAATGTACCGTGTGGAGTTGAAAGGATAGAACATTAGAGGATAGGATCAACAGAATGGTGAGTTTCTAATGTACCGTGTGGAGTTGAAAGGATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAAGTTTCTAATGTACCGTGTGGAGTTGAAAGAAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGGGTTTCTAATGTACCGTGTGGAGTTGAAAGTTGATTGTTCTACATGATGGTCCATCAGTCTTCACCTGTTTCTAATGTACCGTGTGGAGTTGAAAGCTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTTGTTTCTAATGTACCGTGTGGAGTTGAAAGTTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTATGTTTCTAATGTACCGTGTGGAGTTGAAAGATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGATATTTCTAATGTACCGTGTGGAGTTGAAAGCAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATTGTTTCTAATGTACCGTGTGGAGTTGAAAGCTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTTGTTTCTAATGTACCGTGTGGAGTTGAAAGAGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATGGTTTCTAATGTACCGTGTGGAGTTGAAAGGATATAGAGAAAGTATGATCTAAATCATAATCAACCGTTTCTAATGTACCGTGTGGAGTTGAAAGATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATTGTTTCTAATGTACCGTGTGGAGTTGAAAGGTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTGGTTTCTAATGTACCGTGTGGAGTTGAAAGTCTTCAGTAACAAACAAGCTATCAGTGTCAACATATGTTTCTAATGTACCGTGTGGAGTTGAAAGGTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAGGTTTCTAATGTACCGTGTGGAGTTGAAAGTCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGTGTTTCTAATGTACCGTGTGGAGTTGAAAGAGCAACAAATCCGCACACCAGACCAAACACTACAAATGTTTCTAATGTACCGTGTGGAGTTGAAAGAGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTCGTTTCTAATGTACCGTGTGGAGTTGAAAGGATCTACTTAGGCAATGCTTTCTCACTATCCATGCTACGTTTCTAATGTACCGTGTGGAGTTGAAAGGATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGAGTTTCTAATGTACCGTGTGGAGTTGAAAGAAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGTGTTTCTAATGTACCGTGTGAAGTTGAAAGCAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGAGTTTCTAATGTACCGTGTGGAGTTGAAAGGTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGAGTTTCTAATGTACCGTGTGGAGTTGAAAGCACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAGGTTTCTAATGTACCGTGTGGAGTTGAAAA

>NC_013894|3|2|246542-246905|PILER-CR
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAGTGATCTTGGATACAATCATGAGAACGCTGTAATACTGTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC
GTTTCTAATGTACCGTGTGGAGTTGAAAGTCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATGGTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA
GTTTCTAATGTACCGTGTGGAGTTGAAAGTACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATAGTTTCTAATGTACCGTGTGGAGTTGAAA	GCAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCATTAACAGAACCAACGAGATAACCCGCCAGACTCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT
ATTTCTAATGTACCGTGTGGAGTTGAAA	GCAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATATAGAGAAAGTATGATCTAAATCATAATCAACC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAACAAATCCGCACACCAGACCAAACACTACAAAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT
GTTTCTAATGTACCGTGTGAAGTTGAAA	GCAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG


>NC_013894|3|3|246542-250335|CRISPRCasFinder
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGATCTTGGATACAATCATGAGAACGCTGTAATACT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CATTAACAGAACCAACGAGATAACCCGCCAGACTCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT
ATTTCTAATGTACCGTGTGGAGTTGAAAG	CAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATATAGAGAAAGTATGATCTAAATCATAATCAACC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCAACAAATCCGCACACCAGACCAAACACTACAAAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT
GTTTCTAATGTACCGTGTGAAGTTGAAAG	CAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAA

>NC_013894|3|2|246542-250335|CRT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGATCTTGGATACAATCATGAGAACGCTGTAATACT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CATTAACAGAACCAACGAGATAACCCGCCAGACTCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT
ATTTCTAATGTACCGTGTGGAGTTGAAAG	CAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATATAGAGAAAGTATGATCTAAATCATAATCAACC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCAACAAATCCGCACACCAGACCAAACACTACAAAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT
GTTTCTAATGTACCGTGTGAAGTTGAAAG	CAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAA

>NC_013894|3|3|246942-247646|PILER-CR
	TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAGTGATCTTGGATACAATCATGAGAACGCTGTAATACTGTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC
GTTTCTAATGTACCGTGTGGAGTTGAAAGTCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATGGTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA
GTTTCTAATGTACCGTGTGGAGTTGAAAGTACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATAGTTTCTAATGTACCGTGTGGAGTTGAAA	GCAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCATTAACAGAACCAACGAGATAACCCGCCAGACTCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT
ATTTCTAATGTACCGTGTGGAGTTGAAA	GCAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATATAGAGAAAGTATGATCTAAATCATAATCAACC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAACAAATCCGCACACCAGACCAAACACTACAAAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT
GTTTCTAATGTACCGTGTGAAGTTGAAA	GCAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG


>NC_013894|3|4|247760-248318|PILER-CR
	TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAGTGATCTTGGATACAATCATGAGAACGCTGTAATACTGTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC
GTTTCTAATGTACCGTGTGGAGTTGAAAGTCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATGGTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA
GTTTCTAATGTACCGTGTGGAGTTGAAAGTACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATAGTTTCTAATGTACCGTGTGGAGTTGAAA	GCAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCATTAACAGAACCAACGAGATAACCCGCCAGACTCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT
ATTTCTAATGTACCGTGTGGAGTTGAAA	GCAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATATAGAGAAAGTATGATCTAAATCATAATCAACC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAACAAATCCGCACACCAGACCAAACACTACAAAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT
GTTTCTAATGTACCGTGTGAAGTTGAAA	GCAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG


>NC_013894|3|5|248357-250334|PILER-CR
	TTTACTAAATGGGCACTCTGCACAATACTGTGCAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGCTGTCAGGTCTTGTATAAAGGTATTCACGCATTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATGTTTTTACTTGCAAGGTTTATCGTGTGTGGCGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTCTTTATCGTAAGGATACTTATTGACAAACTTAAGCAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTTCCGTCCTTGCATTATAAATTGCAACTTTGAACCT
GTTTCTAATGTACCGTGTGGAGTTGAAAGTGATCTTGGATACAATCATGAGAACGCTGTAATACTGTTTCTAATGTACCGTGTGGAGTTGAAAG	TCAACTGTTAACTCATCAATAAAGATAGGTTCTGTACTACCATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATCTGAAAGCTTCACACCTACCACCGTAGTAGCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TATACTTGGTGAAACTTCCACCACCAGCTTCAAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CCTAAAAAGAAGGTGGGAATACGTTCAGGAAGGTGCTTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAAATGTACTGCGTGGTTCTTGGAATCCTTCTGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AACTGTGCAACAAATTGCGTTGCTTTTTCTTGCGATA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAGGTCTTGACTTCTACGTCCTCACCGCCCACTCCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAAAGGTGGAGAGAATGTTTAACCTGCTGTCTATGTCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGGATGTTGCAATTGAGGTGGGTAGAAGGTTTGTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CGCTTACGCATGGCTAATGCGAATTTGTCCGCTTACGC
GTTTCTAATGTACCGTGTGGAGTTGAAAGTCAGGTGCGGTTGTACTGTCTGGTGAATTGGATGGTGTGGTTTCTAATGTACCGTGTGGAGTTGAAAGGTTGAAAGGTTGGCATCTATAAGAGTAAATGCTTCTTTTCTTATGGTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAAAGCGTTAAGGCTACTATTCTTGCCATAGTCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAAGGAAAAACTTCTGAGCCACTTTCTAAGAAGCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGGAGCAAAGATGAGGAAGTTGATGGTAGCTATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCACAGTGAGCATTCCTAAGGAGAGACAGGACAGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAAGGTGTGGTAAATGAAGTCTGTCCAGCGTTGAAGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTGATCTTTCCACCCAAGAGCTTTAAGAACATCAATCCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAGAGAGCTACGAGGAGCTTCTCAATGCAGTGGTAA
GTTTCTAATGTACCGTGTGGAGTTGAAAGTACAGTGAATTCATAAAGATTTTGTAAAAGTACGCATAGTTTCTAATGTACCGTGTGGAGTTGAAA	GCAAGACCCTACCATTTTAGCAAAGAAGGGCTCTCTCTTGAGTAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGTAATAGAACCGAGAAATCAAGGAAGGATAAAAGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTCTGAACATCCAGAGCTTGCCAAACATCAAAACGAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCATTAACAGAACCAACGAGATAACCCGCCAGACTCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATAGAACATTAGAGGATAGGATCAACAGAATGGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATTATAAAAAATCCTCTTCAACTCCTTGCGCAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAAGAAAGGGTTAAACTTAATACTCATGGCAGGTGTAGG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTGATTGTTCTACATGATGGTCCATCAGTCTTCACCT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACTATCGCGTCTACTTTTGCAGATACTTCGCAAGATGCTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTTTGAGTTACAGAGAAAATCAGAACTTGCAAGAGCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATCTGGTTAAAAGATCATGTGCTTCTTGTTCTGTGAT
ATTTCTAATGTACCGTGTGGAGTTGAAA	GCAAAGGCTCTGTGGAAGTCTTCCATCCGCTCCCAATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCTACCTAAACGGTGCGGTTTCGTGCCGTGCCGCGCTTTTT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCTTGTCAAGGCTTGGCAAAACTACGGTAGGAGGTGCG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGTACTCAATTGGTAGTCTCCTGAATACATTCACTGCAAATG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATATAGAGAAAGTATGATCTAAATCATAATCAACC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GATATGGTTCTTACGGTGTTGGTGTTGCTATACAGACATT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTATCTGTTTTCTGTATAGCTCTACTATGTTCTCTGCTG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCTTCAGTAACAAACAAGCTATCAGTGTCAACATAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTTTGTTATCTGCACCTTCCCTACCGCCTGCCCATTAAG
GTTTCTAATGTACCGTGTGGAGTTGAAA	GTCATGTGGCTCGCTCCCGACTTAAGAGGCTTACAAAGGT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAACAAATCCGCACACCAGACCAAACACTACAAAT
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAGCAAGTAAATCATGTGCTTCTTGTTCTGTGATGTC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCTACTTAGGCAATGCTTTCTCACTATCCATGCTAC
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGATCCTAAGATACTCCAAAACATCCTCGCAAAAGCAGTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GAAAGAGCATCAGAGACAGATATGTGAAGAAGTTTGT
GTTTCTAATGTACCGTGTGAAGTTGAAA	GCAGAGCACACTCCGTCAAAGCACAGGAAACTTCCCTGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GGTGGGACCCTACAGGTGGAACTTCTTCAGGATGGGA
GTTTCTAATGTACCGTGTGGAGTTGAAA	GCACCGTACCGTTAGGTTAGGAGGAGGAAGGATGGGAG
GTTTCTAATGTACCGTGTGGAGTTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013894.1\|WP_012991291.1\|244616_245624_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NC_013894.1\|WP_012991287.1\|240246_241149_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_013894.1\|WP_012991284.1\|236766_237426_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|223675
NC_013894.1\|WP_012991301.1\|259537_260761_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NC_013894.1\|WP_012991303.1\|261181_261598_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012991300.1\|258501_259533_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NC_013894.1\|WP_012991298.1\|256769_257819_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NC_013894.1\|WP_012991290.1\|242308_244633_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|227116
NC_013894.1\|WP_012991299.1\|257831_258449_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_013894.1\|WP_012991293.1\|246204_246351_-\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012991288.1\|241165_241546_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NC_013894.1\|WP_012991297.1\|256077_256779_-\|NAD-dependent-deacylase	unknown	unknown	gnl\|CDD\|238703
NC_013894.1\|WP_012991292.1\|245616_246174_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|224431
NC_013894.1\|WP_012991286.1\|238592_240242_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NC_013894.1\|WP_148209114.1\|237382_238582_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_013894.1\|WP_012991295.1\|250707_253707_-\|DUF2309-domain-containing-protein	unknown	unknown	gnl\|CDD\|225548
NC_013894.1\|WP_012991289.1\|241475_242309_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NC_013894.1\|WP_012991296.1\|253711_255991_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|223941
NC_013894.1\|WP_012991302.1\|260762_261185_+\|metal-binding-protein	unknown	unknown	gnl\|CDD\|370771
NC_013894.1\|WP_012991294.1\|250357_250711_-\|DUF190-domain-containing-protein	unknown	unknown	gnl\|CDD\|223424

Protein	Function_ID	Function_description	E-value
NC_013894.1\|WP_012991291.1\|244616_245624_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	1.09059e-161
NC_013894.1\|WP_012991287.1\|240246_241149_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	2.66671e-167
NC_013894.1\|WP_012991284.1\|236766_237426_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|223675	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones].	1.04242e-52
NC_013894.1\|WP_012991301.1\|259537_260761_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	0
NC_013894.1\|WP_012991300.1\|258501_259533_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.07102e-154
NC_013894.1\|WP_012991298.1\|256769_257819_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.90778e-136
NC_013894.1\|WP_012991295.1\|250707_253707_-\|DUF2309-domain-containing-protein	gnl\|CDD\|225548	COG3002, COG3002, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_013894.1\|WP_012991299.1\|257831_258449_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	1.32426e-104
NC_013894.1\|WP_012991296.1\|253711_255991_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|223941	COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism].	6.53941e-72
NC_013894.1\|WP_012991288.1\|241165_241546_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	1.89899e-38
NC_013894.1\|WP_012991292.1\|245616_246174_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|224431	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis].	4.58548e-46
NC_013894.1\|WP_012991286.1\|238592_240242_-\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	7.20801e-35
NC_013894.1\|WP_148209114.1\|237382_238582_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.98921e-67
NC_013894.1\|WP_012991290.1\|242308_244633_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	1.19995e-172
NC_013894.1\|WP_012991297.1\|256077_256779_-\|NAD-dependent-deacylase	gnl\|CDD\|238703	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. .	4.98941e-130
NC_013894.1\|WP_012991289.1\|241475_242309_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	6.68702e-144
NC_013894.1\|WP_012991302.1\|260762_261185_+\|metal-binding-protein	gnl\|CDD\|370771	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227). Members of this family of hypothetical bacterial proteins possess metal binding properties; however, their exact function has not, as yet, been determined.	1.43914e-28
NC_013894.1\|WP_012991294.1\|250357_250711_-\|DUF190-domain-containing-protein	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	4.25035e-18

>NC_013894.1|WP_012991293.1|246204_246351_-|hypothetical-protein
MPKSHSCKEIPTLYSVAKITRVLCGPSVLVDIIYQKEDYDKVLLDPLH
>NC_013894.1|WP_012991292.1|245616_246174_-|RNA-2',3'-cyclic-phosphodiesterase
MVRVFVGSFTTKRIQEQVELIKEKAERHIKGKWVEPQNYHITYQFIGEVEESKLLDIVKALQEVVQKQKPVKVKYRSLGVFPDVERARVLWIGVAEGHNQLKNLARDVINATRRVGIKTDGKPFYPHVTVCRIKEYDKRWLKNFLRQHQNTFFGEDTIESIALVKSSLTSVGPIYTVLEEFYFHG
>NC_013894.1|WP_012991291.1|244616_245624_-|phosphoribosylformylglycinamidine-cyclo-ligase
MGKLTYKQAGVDEEKAQRFVNFIKERVSSMPFEVKLLGSFASGVKIPPMKRPVVMMSTDGVGTKLLVAQKVGIHSTVGIDLVAMNVNDVITSGAIPIAFLDYIAFGDVTEEVLRSVMEGILEGCRRAEVPLVGGETAQMPDFYPLGVYDLVGFCVGICEEDELITGSSIREGDLLLAIPSSGFHSNGYSLIRKVLEVKKVDYHHYLQEWGKTVAEVLLEPTRIYWEDIKKLRTAKLMPKAMVHVTGGGIPGNLIRVLPEGIKARVDRSVIGERFPFSWIKKLGEIEEEEMFRVFNMGVGFILVVDKDHLDKVTETLPDAFIIGEVLRGERSVEIL
>NC_013894.1|WP_012991290.1|242308_244633_-|outer-membrane-protein-assembly-factor-BamA
MWRSFSLILISVWFAFSQVIGRVEVSGNRYVPDELILSIIRAREGVTYTPDLVREDIRRLYRTGFFDKVEVYGEKVGDKINLYYRVEDLPVIYRIEFVGNKKIKSEDLEKKIGIETEVGKINIEELTKGYTSSPAVEEKVEIQRRLTLGRVLSKEEMEIIKRRIIQAYAREGYPNVEVYYQLVPKKGASKLVYIIKEGEPEYVGSITFEGNKSFRSGRLKDLMETKEPSLLAFRFRPPFSEEILKDDVQKIKEFYKSEGFLEADVSYSIKKEGNRYSITIKVKEGPRYKLKELKLEGNTYFSTTELVGNTLKKNKGGYFREEVIQKIIQNIKDKYSQLGFLMVNVQEEPQVDPEKKEVSVLMRIEEGEPVYADRIEVRGNYETRDYVIRRELRFQEGDLVNQKEIDRSRTRIFNLGYYQDVDIEPFPADRNKWDFVAKVRERFTGQFSVGLGYNQITKVSGFVALRKGNFLGTGDIAGISVSYGSHYKDNSFSYTRKWFLNKPIDLTGSVYDRRIDYTTYTVSRTGLDLSLSREIKEYWRFTVGTSIQRVRYSNISPSASVVLRQEEGTRQSRKLFLGITRDTRDNYLFPTKGSITDISYSVAVPVLGGTERFNKVVLSHQRFIKDTWLDTGLIFSFKGVLGVVEPYGGKTVPLDERFFVGGDFTIRGYKYGYAGPLDPNVHEPVGAKKELILSFEANYPIYKNVLYGAVFYDTGLGFNDWKELKTQNLRGGFGVGVRFITPFAPIKLDLAFKTKKVPGDTSRTKLHFVLGVFF
>NC_013894.1|WP_012991289.1|241475_242309_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MLPRALTIAGSDSGGGAGIQADLKTFTVLGVYGMTAITCVTVQNTVGVFGVVEIPPEVVYQQIKVVAEDIGVDALKTGMLYSQQTVEAVAKAVKELKLNNLVVDPVMRAKSGDPLLKPEAVEALVEHLIPLATLITPNIPEAEDLTGMRIRSVEDMEKACLRLMEYGCKAVLLKGGHMEGDKVTDVFYDGKSFEYIQHEKVTTKNTHGTGCTLSAAITAFLAKGLPLEKAVRMGVSYLLRAISTAPSLGKGHGPLNHMWPLPSLTEPQLPNNPFHEI
>NC_013894.1|WP_012991288.1|241165_241546_+|holo-ACP-synthase
MLGVDIVSNRRIKEAVEKFGERFLRRVYTQREIEYCFSQRDPYPCLAARWACKEAVMKAVYAELKTMLTWKDIEVNGVRFHPPDVKILRQDLRERLKLYKLVVSISHERDYSVAVAQLMRVGATCD
>NC_013894.1|WP_012991287.1|240246_241149_-|hydroxymethylbilane-synthase
MHIRIGTRRSQLALWQANYVKRKLEDMGHTVELVPITTTGDKITDAPLAKIGGKGLFVKEIEEALLRGDIDVAVHSLKDVPTKLPDGLTLGAITERELPYDVLISRDGQRLENLPTGAVVGTSSLRRKVQIKRMRRDLVIKDLRGNVDTRIRKLDEGQYDAIVLAYAGIRRMGWENRIVQILEDFIPAVGQGSMAVEIREDDEKIREVISLLDHRESRIRVEAERAFLEVMEGGCQVPMGAIAWLDGSRLFMKGFLSDLEGENFVEAYVEGNVEKAQLLGRELAEKILSQGGRSILESIL
>NC_013894.1|WP_012991286.1|238592_240242_-|ATP-binding-protein
MQIGLVLGTRPISPLEFWIGVDEGRVIELDQVVYAVTDLGDKEVKFYGIIQEVQKFLEGPSMVYEDRLFREGACPANVAYVAKVSVTRVEPEFFVPPQPGDPVYLAEGEELERALYYDQMKVRIPAGLTRNGQIVYLNYHFLNGVEGAHVSISGMSGVATKTSYALFLLYSVLKKGSDIRKHGIIFNVKGKDLLWIDKRNKNLSPEDEDALRKMGFEPEPFSDVRFYVPPHKNDPYKPDCERYDDRVTPFYWSMLDFAENGLIRFMFAEEEEGKSQVPYVVEKIATQLHIRAQRSKSLGVLTDSYGREIDSLQKLEELLKEAIEESEKGNKDIYREWFGDSSLQTARAFLRRFSRASMHIGRFVRGTVSSPIDWESSKVSVIDISGLHHIAQMFVVGAVLKRLFEEKESRSTPEPKVFVVLDELNKYAPRDGWSPIKDVILDIAERGRSLGVILIGAQQTASEIEKRVLANSAIKVVGRLDSSEVLSKEYEFLMGNFRQRALLLKKGSMILHQPDIPTPLMVRFPKPPWATRREEVKEEISVPEEFGNF
>NC_013894.1|WP_148209114.1|237382_238582_-|N-acetylmuramoyl-L-alanine-amidase
MFSLLLGVCWARGEASIEVGFRRALYPDKERIVLVLGERVDYRVLLLENPKRIVVDIIGVSVKLPQGIATRVGKHQWGTRLVLERNYGTVKAFSLEDPFRIVLDIYAPSEKEKADDDSLIAILDPTVLKVLGYTHEHQKKERVISERVKTRVISQLKTVVIDPGHGGHDPGAIGVDGIKEKDVNLAIAKKLAKLLAEDGRFRVVMTRKDDTFVTLQERAHIALRNRADLLVSIHANASPKGVSEHARGTYIFAISSEAAQKKKEQIVRNDSYAKLALGVADLPISARKVLADLAMDVTLYESVAFAQKLAKAINTELGRNVEFKGVQRAGFAVLKTPGIPSVLVEVGFITNPTEARLMTQEDFQEKMAKAIYGAIVEYFFPSSQKVTSVQEAYEAEAKP
>NC_013894.1|WP_012991284.1|236766_237426_+|7-carboxy-7-deazaguanine-synthase-QueE
MLRGEVRRKTALKVSEIYPSLQGEGLLVGTPSVFVRLQGCNLRCPWCDQPESLHPGGGALMSVEDVIGKVREYPHRHVVITGGEPFTQSFLTLLVEELLKEGFSVQIETNGTLWQKGMDTLASHIHITLSPKGVASWFVHPKVLLYARELKWVVDHLLTLDIILMPSFRRFLEEERVVLQPEGNKEIFLQKALSLQEELLSLGYRVRVLPQLHKLLGLK
>NC_013894.1|WP_012991294.1|250357_250711_-|DUF190-domain-containing-protein
MKSVKLYEMKKVEIIVRGEDLDFVLDLLDRAGATGYTIIHNLSGKGSHGFHEGHLLFNEEDTLVMVISVMPENLVEAVLEGITPFLNKHSGVVFVSSVMVSRVGKFGDVPTKADGGT
>NC_013894.1|WP_012991295.1|250707_253707_-|DUF2309-domain-containing-protein
MEKGRKLYIRSLVNMAAEPIAYFWPMRTFITRNPLRGLEDKPFKDALKEGELLFGGRGYLRREDYRYLYSKGYMKDEFLREGIRKFLSSMELKLELPYEELLFTLFVDNIKEPALNDLYKGKVDEKILNALMEHFTEDPAQVCRDILLSIGLKHTLQDIIELLTGKNLSQTIDELTIKTAFDFLDEGQSTIDMPGRGAGFYKAWRELAKRNLRFFLWAGKSLKDMVEAFQEPEPAIEYVLTSFELPQALWEGYISLELARLKGIAGFIKWRSHNKFYYWQKVHPVDMVDYTAIRLLIAKAVIDAHKKGLPFEPTYRALEEFLNKERARAYLLYELGTKRCPPQLWDRMKDYLKKPHEKVEEYVRAKAEILALSYYLFLTNWTRKVGIDINSLTADHLLELMKVYEKFKEEEGYIYLRALEDTHIDKLVKLIRAPQEETQERPLAQAFFCIDVRSERFRRHLESLGRYQTYGIAGFFGVPVAMVNLQKGHEEFLCPVIVTPRNVVFEVPYNKRGVEKERVASHIFHSVKDHVLAPFVAVEMLGFAFGFDFLGKTFLPEKYLRFKDLAFKDYTKTSLIVNKLSDEEIQQIIQSYYSTLIRTVLRERFGMQTINDEMVNQVYEACLNGGNTLSENLKEVVELLREKYKVERGYVELFRERLKSVGFTKEEQAFLISTALKSIGLTKEFAPIVLVLGHESRSENNPYESALDCGACGGASGIYNARIFCIMANDHVVRQIMAQRYGLEIPPYTVFIPGVHNTTTDEVFLYDLEFLPAEYIPLIDKIIQDLQVAKDLTLQERAKTLDTKNTQDVYKKAYDWSEVRPEWGLSGNYAFIIGRRSITKLANLDGRVFLHSYDYRVDKKGFLLENILAGPAVVGQWINSEYYFSTVDNEVYGSGSKVYHNVVGRIGVMTGNYSDLRTGLPAQTVLKEGKPFHIPIRYTLIVEAPFELARNAINKIRKIRDLMQNGWINLLIFDPEKEIFYRYLEGVWVEYFKKEEVKA
>NC_013894.1|WP_012991296.1|253711_255991_-|2-hydroxyacid-dehydrogenase
MFPEVAIVIIPLLSMITSLFTEKRTYAKVSTLFTGMAFLLSLYVLIFTNKESSLLFLRFDGLGTLLASYILLVSTVIHKYSENYMKDEQGFKRYFLLLDLMTWNLLLLVLSNHLIILFASWHLMGVILYFLLTFNNRREQAVQSGRTALFTHRIADVPLLVAILLLYQQYGTFEISKLAQMITTGPSDTLWIVTLLVILSGIIKSAQIPFHVWLVYSMEGPTPVSALMHAGIVNAGAFIANRFAFMFPHDLYGLSLSFLIGLITAIVGSTLMLMQNDVKKALGYSTVGQMGYMMMEIGVGAFALALYHMMAHGIFKATLFLSSGGVIHEARRDTNIPRDEVYDALVKREMSFKEIPTVFYGAVTLIVPFVLVLVTHLFFEQDVFRYKAPLILLFFGWVTSAQILFNLFKMGKEKPLLTIFLGGFSLFLLLSVYTFMSHILQVFVFTYEGLQEEIYRRAFSNAPLFFLSMILSLILVLAGWVLIYFANEEKPLKLHLSLYAHLSRELYFPDLYKLTGKLFLRLARVLSITSSSVVPVYGFFYQGGSSGSFLLKVFLLSLFIPLFPISLITSYLIKRFWIYSYPTIALLGFITLKLTHLPAYEPLHYLAALTLIFHSVRATLSENFKESVSELYPALLSITWISGDDHFVLLLLPSLLLYLLGVYIKKVLQTDSFYYAGGLMEKMPIYSLLLVIVSLQACLTPVMPSFYSFFEALLRSNTLQIILLVMGWFTLGVAVALSVWRLLHGKPRDDIRYADILRR
>NC_013894.1|WP_012991297.1|256077_256779_-|NAD-dependent-deacylase
MRVVILTGAGVSAESGVPTFRGPSGLWRGFDPSKLATPQAFQENPKLVWEWYDWRRSIIAKAEPNKAHLIIAQMEELFKDFILITQNVDGLHQKAGSRKVVELHGNIWMVRCLSCGDLYEDRRVPLPEIPPHCRRCKGLVRPNVVWFGEALPEDALRTAIDWSQSCDVMVVVGTSGVVYPAAHLPYLAAQRGATVIEVNPEPTPISSLAHITVRKPASEGMVEVLEKLKKMGI
>NC_013894.1|WP_012991298.1|256769_257819_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MIRIIEPRFSEEEKEAILRVLESQQITRGEFTKRFQEEFAHYLGVEYVFTVCSGTVALFIALKAIGVEGQRVVVPALSFMATIDAVYLAGGIPVVVDVDDYYTMDVQQLEDAVKKYRPKVVIPVHLYGQMADMESIMFLSEKYGFYVLEDAAQAHGASFKGKKAGAWGHIAAFSFYASKNVPMGEGGAVVTNDSNLAREVRKWIDFGDHPAFNVRITEFQAAIGTVQLKHLDERNRRRREIARKYASALDINGHLIHPSEREGAYHVFHLYTLRHPMRDKIIEVLKEREIDARVYYPYLLSELRKAEHLPLPRAERFKRELFSIPVHPYLTDREVDYIVESLASVVACV
>NC_013894.1|WP_012991299.1|257831_258449_-|endonuclease-III
MSHVKEIIERLEKVFPNKLELNFSNPFQLLVAVILSAQTTDAKVNQITPKLFERFPTPKDLAEAPLEEIEEYIRSVNYYRNKAKFLKEASRILVEKYGGEVPKTIDELVALPGIGRKSASMILYNAYGINEGIAVDTHVARVSQRLGLTSHTDPQKIEKDLMQITPKEDWGKLSNLLILLGRYVCTAKNPQHHKCVLRDICPSAV
>NC_013894.1|WP_012991300.1|258501_259533_+|Mrp/NBP35-family-ATP-binding-protein
MAVKDIMDALRKEHVDNTPLSELVKDIKLVGSTLEIVFRLPQKHLEEEIRRKTVQALESVPDVEKVNVRFVEGPPAQFLQAPVFQRRKVQGVKHLIAVGSGKGGVGKSTVAVNLALALSRLGARTGLLDADIYGPSVPTMLGLKGQRVYVNDQNKIIPLEKFGLKTLSIGFLLPSEDTPVIWRGPMLMKALTQFLFDVEWGELDVLVLDLPPGTGDVQLTLAQNVDMSGAIIVTTPQDVALADVRKATSMFKEVGIPVLGVIENMAYFVCPESGKKYYIFGKGKVLEFAQAYGLKILGSIPIDPQVAEGSDLGLPIVEAYPHSEVAQAFLGIARLVLEELNRR
>NC_013894.1|WP_012991301.1|259537_260761_+|cysteine-desulfurase
MFLQKAGKRVVYLDHIATTPVAQEVIEAMLPYFRERFGNPTSLHSFGQVAKKAINEAREKIASLIKAGSPEEIIFTSGGIEANNLAIKGISKAYEKRGRHIVSTEIEHHSILHPLKTLEREGWEVTYLKPDKYGLIDPDQVREAVREDTVLVSIGHSNREIGTIQNIKELVKAAKEKNPRVIFHTDACPTLGHYPVDLQEWGVDAASFTAHLMYGPKGVGALWTRKGVKIRPLIEGGTQERGVRAGTENVPGIVGFGAAAELTMKELDDRMKRLSYYRDKLKKALEEKLDYIEFTGHPTQRLPHHLSLIVHLIEGEAMLLRLDLMGIETASGSACVSLALKQSHVLFAIGVPKEVANGSLVFSFGRDNTEEDVDYVIEEFPKTVKLLRELSPFTPENWEQYVKGKKG
>NC_013894.1|WP_012991302.1|260762_261185_+|metal-binding-protein
MALGRVHEVVNLLALPAFLYFIPKEHYLTFVAGYLIGTFLLSPDLDLKVSKPTKRWGPFRYLWRPYQKKSRHRGLSHVPFFGTFLRLSYITAVLLFISWLLGFREPFRILSEASLWEGSFYFLIGILLSEIMHLIMDVLR
>NC_013894.1|WP_012991303.1|261181_261598_+|hypothetical-protein
MMKDLSHLIKDSRPDLREHLVKYLLSIINIEVTSLPPDSWEKTLQTWKKILLLADQLRQTEPSKRQELYGKWKMDGMMVSLLENLIDTINRARQEGLLKEKERAYHLLRLAAQYALEREDLLRAEGISHQLLDLILKT

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Crispr_ID: NC_013894_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013894_4

389627-392006

Orphan

Consensus_repeat	Method
CTTTCAACTCCACACGGTACATTAGAAAC	PILER-CR
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CRISPRCasFinder
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CRT

35 spacers

The CRISPR arrays of NC_013894_4

>merge|NC_013894|4|389627-392006|PILER-CR,CRISPRCasFinder,CRT
GTTTCTAATGTACCGTGTGGAGTTGAAAGGGTATTTGCTGGCTGGTCTAAAAGCATGTTTAAAGTCTGTTTCTAATGTACCGTGTGGAGTTGAAAGGGTTTTGACTTCATACACTAAGCGCTCGTGGTAATATGTTTCTAATGTACCGTGTGGAGTTGAAAGGTCATGCTTTGAAATTTTACTTCTTCCTGCTATAATTGTGTTTCTAATGTACCGTGTGGAGTTGAAAGATATACTGGTTTAACTCTACAGGTTTTACTGGGCGACCCTTGCTGTGTTTCTAATGTACCGTGTGGAGTTGAAAGGTAAACATCTTCTACTATTATTTCCATTCCTGAAGCTAGTTTCTAATGTACCGTGTGGAGTTGAAAGTGATATGGGTATATCCCCCCTATACTCAGGAAAATCGTTTCTAATGTACCGTGTGGAGTTGAAAGGATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGCGTTTCTAATGTACCGTGTGGAGTTGAAAGGATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGCGTTTCTAATGTACCGTGTGGAGTTGAAAGGCACATGTGTATAGCCGATAGTGGCTTTCAAGCCCGTTTCTAATGTACCGTGTGGAGTTGAAAGGAGGAGTGTCTCCTGGCTCTCGGAAGAGAACGGCTGGAGTTTCTAATGTACCGTGTGGAGTTGAAAGAAAGAAGTTTGTAAGGAAGAGCTTTCACCTCTTCTTCGCGTTTCTAATGTACCGTGTGGAGTTGAAAGCTATAGCGATTTATGTGCTCCTCTGTAAGTTCGTAGAGGTTTCTAATGTACCGTGTGGAGTTGAAAGTCATCTATGAGATAGATGGCACTCTCATACACGGACATCTTGTTTCTAATGTACCGTGTGGAGTTGAAAGTGAGGGCGAAGAAGCTCAATCCTGTATTTCCGTAAAAGTTTCTAATGTACCGTGTGGAGTTGAAAGGACGGGCGTTCACTGAAAGAGTGTTCTTTTGTGGCTGTTTCTAATGTACCGTGTGGAGTTGAAAGTGTTAGCTAAAATGCCTGACCTGTAAATTGCCCTAATTTGGTTTCTAATGTACCGTGTGGAGTTGAAAGACTATCTGCTGATAGAGGTAGCATCTAGGGCATACAGGTTTCTAATGTACCGTGTGGAGTTGAAAGTTCATATAAGGATGTGTGCTTCTGTTTGTGATAGGGACGTTTCTAATGTACCGTGTGGAGTTGAAAGTTTTGTCCCAGTTGAGAAAAAAATTTTTTTTGTCGGAAAGTTTCTAATGTACCGTGTGGAGTTGAAAGATGTAGTTAACATGCTTGAGATACTCAAAAGCATAGGGGTTTCTAATGTACCGTGTGGAGTTGAAAGTCTGCTTTCCATTTACGCCCTATATCGTAGTATTCATGTTTCTAATGTACCGTGTGGAGTTGAAAGAGACCATTCTTGAGAGAGCAGTAAAGGTAGAAATAGCGTTTCTAATGTACCGTGTGGAGTTGAAAGATGGACATCAGGAAAGGTGTCGGCTTTGCTAATGTATGGGTTTCTAATGTACCGTGTGGAGTTGAAAGAATAGTGTGCTTAGGATCCTTGCGGTGGACTCGTGACCCACCGGTTTCTAATGTACCGTGTGGAGTTGAAAGGCTATCTTTTCTATTGTTTCATCCTACCAGTAACGAGGTTTCTAATGTACCGTGTGGAGTTGAAAGTCTGATACGAGCTGGTCAGCTATCTGATAAGCCATTCTGGTTTCTAATGTACCGTGTGGAGTTGAAAGTTAGTCAATGAAATGATGACACGGTTGATGAAGTCCTCGTTTCTAATGTACCGTGTGGAGTTGAAAGTCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTATGTTTCTAATGTACCGTGTGGAGTTGAAAGTTCTCAGCCTGCATAAAGGCTTTGAGGAGAAGCCCGGGGTTTCTAATGTACCGTGTGGAGTTGAAAGTTAGGATCTATGCTCATTATCCCAAGCCCCTTGTCAAGTTTCTAATGTACCGTGTGGAGTTGAAAGTGTCTTTCAAAGCTTTCCTAAAATCACCACTCTCAAAGTTTCTAATGTACCGTGTGGAGTTGAAAGTCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTATGTTTCTAATGTACCGTGTGGAGTTGAAAGATGGGGATAGTGCTGACGAGAGGTCTTCCTACGCTGGGGTTTCTAATGTACCGTGTGGAGTTGAAAGTTCTGTATCTATTTTTTCGTCTGTCCAGTACTCCCGGTTTCTAATGTACCGTGTGGAGTTGGAAGCAGGCTTATGATAAATCGGTAAAAATCCTTTGCTCAAAGTTTCTAACGTACCATGTGGAGTTGAGAG

>NC_013894|4|6|389627-391673|PILER-CR
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GGTATTTGCTGGCTGGTCTAAAAGCATGTTTAAAGTCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GGTTTTGACTTCATACACTAAGCGCTCGTGGTAATAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTCATGCTTTGAAATTTTACTTCTTCCTGCTATAATTGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATATACTGGTTTAACTCTACAGGTTTTACTGGGCGACCCTTGCTGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAACATCTTCTACTATTATTTCCATTCCTGAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGATATGGGTATATCCCCCCTATACTCAGGAAAATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GCACATGTGTATAGCCGATAGTGGCTTTCAAGCCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGAGTGTCTCCTGGCTCTCGGAAGAGAACGGCTGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAAGAAGTTTGTAAGGAAGAGCTTTCACCTCTTCTTCGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTATAGCGATTTATGTGCTCCTCTGTAAGTTCGTAGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCATCTATGAGATAGATGGCACTCTCATACACGGACATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAGGGCGAAGAAGCTCAATCCTGTATTTCCGTAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GACGGGCGTTCACTGAAAGAGTGTTCTTTTGTGGCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGTTAGCTAAAATGCCTGACCTGTAAATTGCCCTAATTTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ACTATCTGCTGATAGAGGTAGCATCTAGGGCATACAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCATATAAGGATGTGTGCTTCTGTTTGTGATAGGGAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTTGTCCCAGTTGAGAAAAAAATTTTTTTTGTCGGAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGTAGTTAACATGCTTGAGATACTCAAAAGCATAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTGCTTTCCATTTACGCCCTATATCGTAGTATTCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGACCATTCTTGAGAGAGCAGTAAAGGTAGAAATAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGGACATCAGGAAAGGTGTCGGCTTTGCTAATGTATGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATAGTGTGCTTAGGATCCTTGCGGTGGACTCGTGACCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GCTATCTTTTCTATTGTTTCATCCTACCAGTAACGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTGATACGAGCTGGTCAGCTATCTGATAAGCCATTCTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTAGTCAATGAAATGATGACACGGTTGATGAAGTCCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCTCAGCCTGCATAAAGGCTTTGAGGAGAAGCCCGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTAGGATCTATGCTCATTATCCCAAGCCCCTTGTCAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG

>NC_013894|4|4|389627-392006|CRISPRCasFinder
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GGTATTTGCTGGCTGGTCTAAAAGCATGTTTAAAGTCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GGTTTTGACTTCATACACTAAGCGCTCGTGGTAATAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTCATGCTTTGAAATTTTACTTCTTCCTGCTATAATTGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATATACTGGTTTAACTCTACAGGTTTTACTGGGCGACCCTTGCTGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAACATCTTCTACTATTATTTCCATTCCTGAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGATATGGGTATATCCCCCCTATACTCAGGAAAATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GCACATGTGTATAGCCGATAGTGGCTTTCAAGCCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGAGTGTCTCCTGGCTCTCGGAAGAGAACGGCTGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAAGAAGTTTGTAAGGAAGAGCTTTCACCTCTTCTTCGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTATAGCGATTTATGTGCTCCTCTGTAAGTTCGTAGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCATCTATGAGATAGATGGCACTCTCATACACGGACATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAGGGCGAAGAAGCTCAATCCTGTATTTCCGTAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GACGGGCGTTCACTGAAAGAGTGTTCTTTTGTGGCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGTTAGCTAAAATGCCTGACCTGTAAATTGCCCTAATTTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ACTATCTGCTGATAGAGGTAGCATCTAGGGCATACAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCATATAAGGATGTGTGCTTCTGTTTGTGATAGGGAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTTGTCCCAGTTGAGAAAAAAATTTTTTTTGTCGGAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGTAGTTAACATGCTTGAGATACTCAAAAGCATAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTGCTTTCCATTTACGCCCTATATCGTAGTATTCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGACCATTCTTGAGAGAGCAGTAAAGGTAGAAATAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGGACATCAGGAAAGGTGTCGGCTTTGCTAATGTATGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATAGTGTGCTTAGGATCCTTGCGGTGGACTCGTGACCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GCTATCTTTTCTATTGTTTCATCCTACCAGTAACGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTGATACGAGCTGGTCAGCTATCTGATAAGCCATTCTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTAGTCAATGAAATGATGACACGGTTGATGAAGTCCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCTCAGCCTGCATAAAGGCTTTGAGGAGAAGCCCGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTAGGATCTATGCTCATTATCCCAAGCCCCTTGTCAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGTCTTTCAAAGCTTTCCTAAAATCACCACTCTCAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGGGGATAGTGCTGACGAGAGGTCTTCCTACGCTGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCTGTATCTATTTTTTCGTCTGTCCAGTACTCCCG
GTTTCTAATGTACCGTGTGGAGTTGGAAG	CAGGCTTATGATAAATCGGTAAAAATCCTTTGCTCAAA
GTTTCTAACGTACCATGTGGAGTTGAGAG

>NC_013894|4|3|389627-392006|CRT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GGTATTTGCTGGCTGGTCTAAAAGCATGTTTAAAGTCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GGTTTTGACTTCATACACTAAGCGCTCGTGGTAATAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTCATGCTTTGAAATTTTACTTCTTCCTGCTATAATTGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATATACTGGTTTAACTCTACAGGTTTTACTGGGCGACCCTTGCTGT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GTAAACATCTTCTACTATTATTTCCATTCCTGAAGCTA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGATATGGGTATATCCCCCCTATACTCAGGAAAATC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GATGGGAACTTTTTTCATTGTGCCATCCTTTACCAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GCACATGTGTATAGCCGATAGTGGCTTTCAAGCCC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GAGGAGTGTCTCCTGGCTCTCGGAAGAGAACGGCTGGA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AAAGAAGTTTGTAAGGAAGAGCTTTCACCTCTTCTTCGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	CTATAGCGATTTATGTGCTCCTCTGTAAGTTCGTAGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCATCTATGAGATAGATGGCACTCTCATACACGGACATCTT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGAGGGCGAAGAAGCTCAATCCTGTATTTCCGTAAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GACGGGCGTTCACTGAAAGAGTGTTCTTTTGTGGCT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGTTAGCTAAAATGCCTGACCTGTAAATTGCCCTAATTTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ACTATCTGCTGATAGAGGTAGCATCTAGGGCATACAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCATATAAGGATGTGTGCTTCTGTTTGTGATAGGGAC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTTTGTCCCAGTTGAGAAAAAAATTTTTTTTGTCGGAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGTAGTTAACATGCTTGAGATACTCAAAAGCATAGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTGCTTTCCATTTACGCCCTATATCGTAGTATTCAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AGACCATTCTTGAGAGAGCAGTAAAGGTAGAAATAGC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGGACATCAGGAAAGGTGTCGGCTTTGCTAATGTATGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	AATAGTGTGCTTAGGATCCTTGCGGTGGACTCGTGACCCACCG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	GCTATCTTTTCTATTGTTTCATCCTACCAGTAACGAG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTGATACGAGCTGGTCAGCTATCTGATAAGCCATTCTG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTAGTCAATGAAATGATGACACGGTTGATGAAGTCCTC
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCTCAGCCTGCATAAAGGCTTTGAGGAGAAGCCCGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTAGGATCTATGCTCATTATCCCAAGCCCCTTGTCAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TGTCTTTCAAAGCTTTCCTAAAATCACCACTCTCAAA
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TCTTGGTTCTGTCTGGATAAACCTTTGCTCAAACTCTAT
GTTTCTAATGTACCGTGTGGAGTTGAAAG	ATGGGGATAGTGCTGACGAGAGGTCTTCCTACGCTGGG
GTTTCTAATGTACCGTGTGGAGTTGAAAG	TTCTGTATCTATTTTTTCGTCTGTCCAGTACTCCCG
GTTTCTAATGTACCGTGTGGAGTTGGAAG	CAGGCTTATGATAAATCGGTAAAAATCCTTTGCTCAAA
GTTTCTAACGTACCATGTGGAGTTGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_013894.1\|WP_012991438.1\|392515_394024_-\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226132
NC_013894.1\|WP_012991440.1\|394979_395426_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224648
NC_013894.1\|WP_012991439.1\|394051_394945_+\|bile-acid:sodium-symporter-family-protein	unknown	unknown	gnl\|CDD\|223462
NC_013894.1\|WP_083762875.1\|387230_388055_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|223469
NC_013894.1\|WP_012991446.1\|399162_399651_+\|4-vinyl-reductase-4VR	unknown	unknown	gnl\|CDD\|367208
NC_013894.1\|WP_012991447.1\|399647_400874_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NC_013894.1\|WP_012991441.1\|395422_396577_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341464
NC_013894.1\|WP_012991432.1\|383725_385435_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NC_013894.1\|WP_012991444.1\|397467_397698_-\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_148209088.1\|380637_381279_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224505
NC_013894.1\|WP_041434068.1\|385445_386585_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NC_013894.1\|WP_012991430.1\|382194_383082_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|223882
NC_013894.1\|WP_012991443.1\|397115_397466_-\|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|376501
NC_013894.1\|WP_012991429.1\|381365_382232_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NC_013894.1\|WP_012991436.1\|388014_389286_-\|nodulation-protein-NfeD	unknown	unknown	gnl\|CDD\|223961
NC_013894.1\|WP_012991445.1\|397694_399086_-\|TldD/PmbA-family-protein	unknown	unknown	gnl\|CDD\|223389
NC_013894.1\|WP_012991427.1\|379387_380641_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|273483
NC_013894.1\|WP_012991434.1\|386616_387222_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NC_013894.1\|WP_012991431.1\|383081_383729_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NC_013894.1\|WP_012991442.1\|396658_397114_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369463

Protein	Function_ID	Function_description	E-value
NC_013894.1\|WP_012991438.1\|392515_394024_-\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226132	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].	0
NC_013894.1\|WP_012991440.1\|394979_395426_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	5.58459e-22
NC_013894.1\|WP_012991439.1\|394051_394945_+\|bile-acid:sodium-symporter-family-protein	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	1.6601e-69
NC_013894.1\|WP_083762875.1\|387230_388055_+\|flippase-like-domain-containing-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	2.15427e-05
NC_013894.1\|WP_012991446.1\|399162_399651_+\|4-vinyl-reductase-4VR	gnl\|CDD\|367208	pfam02830, V4R, V4R domain. The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.	1.42656e-13
NC_013894.1\|WP_012991447.1\|399647_400874_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	5.83218e-82
NC_013894.1\|WP_012991441.1\|395422_396577_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341464	cd08185, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase-like (ADH) proteins. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized.	7.83385e-166
NC_013894.1\|WP_012991432.1\|383725_385435_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NC_013894.1\|WP_148209088.1\|380637_381279_-\|hypothetical-protein	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	0.00526007
NC_013894.1\|WP_041434068.1\|385445_386585_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NC_013894.1\|WP_012991430.1\|382194_383082_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|223882	COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane].	7.3977e-108
NC_013894.1\|WP_012991443.1\|397115_397466_-\|6-carboxytetrahydropterin-synthase	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	2.6406e-35
NC_013894.1\|WP_012991429.1\|381365_382232_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	6.29834e-142
NC_013894.1\|WP_012991436.1\|388014_389286_-\|nodulation-protein-NfeD	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	7.8265e-133
NC_013894.1\|WP_012991445.1\|397694_399086_-\|TldD/PmbA-family-protein	gnl\|CDD\|223389	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only].	6.1854e-139
NC_013894.1\|WP_012991427.1\|379387_380641_-\|cell-division-protein-FtsA	gnl\|CDD\|273483	TIGR01174, Cell_division_protein_FtsA, cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. [Cellular processes, Cell division].	2.62256e-128
NC_013894.1\|WP_012991434.1\|386616_387222_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	4.83668e-13
NC_013894.1\|WP_012991431.1\|383081_383729_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	7.62988e-101
NC_013894.1\|WP_012991442.1\|396658_397114_+\|hypothetical-protein	gnl\|CDD\|369463	pfam07682, SOR, Sulphur oxygenase reductase. The sulphur oxygenase/reductase (SOR) of the thermo-acidophilic archaeon Acidianus ambivalens is an unusual enzyme consisting of 24 identical subunits arranged in a perfectly symmetrical hollow sphere and containing a mononuclear non-heme iron centre (personal communication: A. Kletzin). At 85 degrees C in vitro, elemental sulphur is oxidized to sulphite, thiosulphate and hydrogen sulphide with no external cofactors needed. The proposed equation is: 4S + O2 + 4 H2O ---> 2 HSO3- + 2 H2S + 2 H+.	0.00701085

>NC_013894.1|WP_012991436.1|388014_389286_-|nodulation-protein-NfeD
MRILLILFVLLVQGWGKVLIGQWDDVVSPVMEEYVKRAIREAEEGSFQIFVLKLNTPGGLETSMRKILQEIEKTPVVVVVYVYPPGGRAASAGAIITTFADVAAMAPGTNIGAAHPVQMGGDGEDKTLKEKALQDMLAFVRSMSQKKGRNATVLERMVKESLALTPQEALREGVIDLIASDEKELLRLLDGRTVVKHGRSIQLKTKDTQVVYIEQSFKEKFLMTVTNPTVAYLLLLIGFYGIFFELYNPGTVLPGAVGIISLLLGLYGLGIIGINWLGLLLLLAGIVLLVLELVTPFSGALAVAGSLAVAIGSFILVDPNSPYGRIPISLVVSMAVFTALFFLFIGRLGLQAQKRKKMTGAEELIGEEAEVITDFVKGKGKVMVKGEIWNAVSQEDLRKGDRVKILDVKGLTLYVGYKGEEEP
>NC_013894.1|WP_083762875.1|387230_388055_+|flippase-like-domain-containing-protein
MVPTFLFLASALLLHFLIPHETLWHIWQQLSPTSVFYAFLFYTLSQIVRSLRWKILLKELSTVDVFLINSANVFLNNLLPARTGELSWFFYASRAGVNLTASFWTFLVGRLYDFLALLLLLAHYMWFALPILLFLSLFLYKLVFLLPSVGWLKQLREHVSNNMNLSVSFLLLLFSSLSVILKLAAVLVLLGIKPSVPIVLGFVGGELSTVLPIHSLGGLGTYEFAFALPVKLLGESIRPFLAHAFTVHSFLLVSSALLGIPSMVLLHLYNPRRG
>NC_013894.1|WP_012991434.1|386616_387222_+|NAD(P)/FAD-dependent-oxidoreductase
MKYDVIVVGGGASGLSCILTLVSSRSRGWAWAENRKYALFDTNGSDLYKAYLKNVPGVEPKTGSQLIEFIRKQIQEWGGAEFFQEKVSRIERTEDGWKLSTELGKEYEASFVVLATGFHSFDIEVKGADIQVVENPRSPKPGRIMIKHVDFEVAPNLFVTGTLAGLSSHFTSCAGSGVEVAAEILSRMAGKRIVIHDVPQE
>NC_013894.1|WP_041434068.1|385445_386585_-|methionine-adenosyltransferase
MGISVRMAESPTEGHPDKLADLIADALLDEFLKKDPYSRVSLEVVVISGMTFVAGHVSTEGYVDIPTVVRNTIKEVGYTRPEYGFDADASAVITSIEEQSPDIALGISGEGAGDTATVVGYACNETDSYMPLPITLAHSISKRLADIRKSGKAPFLRPDGKVLITVLYENHKPVSAKDIIVYTQHDPDVSPEKLREFIYEEVIKKVLPEKYMTSHTRVLVNPSGRFVLGGPVADVGQTGRKIVSDAYGDTAYSGGSAFSGKDPTKTDRSASYLARMMAKHVVASGLADRCLVQMAYAFGVSEMIAFDVETYGTEKLEKEKIVKALLEIFPTSPRQIIEFLDLRKPIYKKTACYGHFGKEGLPWEELRYLEKLRDIATAL
>NC_013894.1|WP_012991432.1|383725_385435_-|lysine--tRNA-ligase
MERSRLEKLLRLKEQGKAYPYRYPTSGSIGDIRREWEEDPKGENLRVRGVVKRVSALQEGSFYVRLADPEGGELVVITTESLQTGEECVLEGSLVRKDGKLTLLQACRSQDPALSVKEILRRYDKDPDNREVSVAGRLISLRFMGKAVFGHLQDATGKIQIYIRKDLLGEEAFKEFEDTVDPGDVIGVKGKLFRTSTGELTVEVQEYTLLAKSLHPLPEKWHGLKDVEVRYRQRYLDLIANPKTREILLLRSRVITEVRRFLESKGFVEVETPILQPVASGANAKPFVTYHNYLEQNLYLRIAPELYLKRLIVGGLLKVYELGKNFRNEGVDTTHNPEFTMVEFYCAYWDYKDLMAFTEELFTHILTEVMGGLTITYQGRLLDFTPPYRVYRYFDLLKEKTGKDKDFFLRDEEGVRKLALDIGIPNAEKLTHAKLIDKIFDRLVEEELWGPCFVIDFPALLSPLAKRHREDPDLVERFELFVAGSELANAYSELNDPIEQRERFLQQLREKEMGDEEAMELDEDFVKALEYGMPPTAGEGIGIDRLVMILADVDSIREVILFPALRRRE
>NC_013894.1|WP_012991431.1|383081_383729_-|phosphoribosylglycinamide-formyltransferase
MKVGVLVSGRGSNLQALIDAMEQGKLGASIVFVISDREDALAIKRCENHRIPYAVVRRKDFKDKVEFEKRMVDLLRERDVELVVLAGFMRVLSSVFLSAFPHKVINIHPSLIPAFQGVRAQKQAVEYGVLISGCSVHFVTEELDNGPVIIQACVPLLPHDDEESLSQRILSYEHRVLPQAVRWIAEGRVKLEGRRVRVEGAKYGTLPVNPQLEHF
>NC_013894.1|WP_012991430.1|382194_383082_-|UDP-N-acetylmuramate-dehydrogenase
MQKEEKVSLSPFTTLKIGGVADLFCSPQREEELRQCIQMAKVKDVPILVMGRGANLLVGDVEGLVVSTRYMRGMWVREEKDGLKVKVMAGEPLKTLIQLALKENLEGLYRLAGFPATVGGAVAMNAGAFGYEISQHLTHVAFLDWDGRLHRVPAKEINFSYRHSPFPRWGIVVWAEFLFPRSEKPVYEEYLQIRERRKKTQPIHQPTCGSTFKNPPGDYAGRLIQLVGLKGYRLGRVAFSEIHANFIINLGGATFQEATELIQIAKDKVYRELGITLEEEVRIVEGRRSDGWKIL
>NC_013894.1|WP_012991429.1|381365_382232_-|D-alanine--D-alanine-ligase
MKVVVLMGGRSYEREISLKTGEAILRALRQLGHEAVPLDVTEDLCQRLLEIKPDKVFIALHGPYGEDGRVQAVLDLLGIPYVGSGVLASALAMDKDFTKKILAFHGIPVPRWIAVKRNAPFRWNLFPAVVKPADQGSSIGLHVVEKEEDLTLALEEVWKVSQKALIEEFIQGKDVTVGILKDKPLPPIEIRPKKGVYDYESKYTKGMTEYVFVEDPSVVEKLQEIALKVHTLLELKDMSRIDFRLSDDGTPYVLEVNTIPGMTELSLFPMACNKAGIDFAQMVHILLS
>NC_013894.1|WP_148209088.1|380637_381279_-|hypothetical-protein
MAGFFLPYFLDSIEFFKVRGVYLEGNRFLPQDVFFKTLMYFKNNWLFMTEDRFLRTLQSYSGNSVKSLHIKRTFQKDGVYLTIQVQEREPLFAAMVEDKVLYFDTDGQPFYYPTFPTPPIIVYTHSQTYLLEVSKKLVQLTSSLKKLSEDKWEIYLTDGATVLYGEGKKLVLPPCQEIEEPILSTIERVYNVSKGVKEIVVLRENLAVVKEKP
>NC_013894.1|WP_012991427.1|379387_380641_-|cell-division-protein-FtsA
MKLLMSLDAGTSKTVALVGEMDSYGDIHIIGIGETPSKGIDRGYITRLDLAVQTVTRSVKEAQEMAGTRVDNIIVGVASAGIKSQNEKDTISVAPQPVEIDESHIERLIERATTRAREEGYEIIAAIPRKFILDDQEGVIDPVGLLGSRLSAEVHVTKVHVSSLRNMEKVLHTAGLKIAGRYLSVLASAEAVLSQEEKEEGVLLLDMGAGLTSFILFVEGSPLLTGSVPMGGNSITKDIAHFMKITTEQAEKIKLEHGFALADLVSESDRIKIKPRGEEKETTVSKRSLSEVIQIRLEEIMDSVLQSVEYQGISLSSLHAGVVVTGGGAKLAGMREFLERYTDLPVRVGYPTGVIGLKERVQDPSYATAVGLIKMGFQDIERVKRSTSSPNVNKLQDSKKGFTSLLERIKSFFKEVL
>NC_013894.1|WP_012991438.1|392515_394024_-|sigma-54-interacting-transcriptional-regulator
MRHSIEGRSLSVINQVAKTMSRTLSFKESVEEVLKTLYSFWDVKHSYVALYDKQSRLLRIVGAFGLTEEEIERGLFKKGEGIVGKVYKSGVPTVLSDLSIASYLNRTGLRNRLEGDETFIAVPIRVGEEIIGVLAIFKRFEKESVEEGLQLALILGTMLGMMYKLSQRVDEERREWEEEKRMLTEALSERYNLEGIIGRSTAMRNIMELVKKVAPTDITVLITGESGTGKSLLAKVIHFLSRRKDKPFVTINCSAIPETLLEAELFGYEKGAFTGAYTSKKGKFELADGGTVFLDEIGDMPLSLQPKLLRVIQDKEVEKLGGERTVKVDVRVIAATNRDLGQLVKNGLFREDLYYRLNVFPLHIPPLRERREDIPLLIDHFLRVLSARYNKKVSISPRAVELMMEYPWYGNVRELENLLERLVILKEGTITEKDLPSYFWVELQKDKPRSIPELVQNTEREEILKALQMTGYVKSRAAKLLGLTLRQLDYRIKKYGIEIKKI
>NC_013894.1|WP_012991439.1|394051_394945_+|bile-acid:sodium-symporter-family-protein
MREIVGILVILGFVLIGFFFSSTLANLKGFVVPLLVLVMWSVGFSMREEDLMKVIKSPLLVTYGAFVHYTVMPLLAYVLSHLLKLDKDLYVGMILVGASPSGTASNVLTYMAGGNLPYAVGVTVFSTLLSPIMTPLWTYLLAGHVVEVDLLKLAKEALAVVVLPVVLGFSLRRTFPQLSKLESFFPVFSILVIGLIVGVVVAVSKDRILQVSVPLFVAVFLHNLMGLALGFFIGKLTGLDRYMARTLSIEVGTQNSGLAVALALSNFSPSSALPGAVFSVVQNVNGLLLAHIYRRWL
>NC_013894.1|WP_012991440.1|394979_395426_+|TraR/DksA-family-transcriptional-regulator
MYSSQELSELKEKLLEEKRKLLERVQKMEDTQARIGEEVKEPGDLEDISQMTYTQEVLDNLSSREVFLLREIDYALQKMQAGTYGICEYCGEYIELERLRAIPWTRYHAQCAEKVEEEGIMPTYTVPGGFEGTIPEDIEIQREDITEA
>NC_013894.1|WP_012991441.1|395422_396577_+|iron-containing-alcohol-dehydrogenase
MKFEFYLPVEVIFGVGSLNRLGEVARRFGFKAILVTGRQSARKSGALEKAIDSLKRHGIKEVLVFDEVEPNPTDTTVNQLSRLIVEEKVDFIVGLGGGSALDVAKASSLVSSNEGSAWDYVNYPEGPRLIPFLNRPVICVPTTAGTGSEVNRYSVISSPVRKEKMVISHSLNYPKAAIVDPELTVSMSRKLTAVTGVDAFMHALEAFTNRVEDTFADHLAITALSIIKEWLPIALEEPENLKARAQMSYAATLAGIAIDRKRVALIHGMEHPVSAHYPHVAHGEGLAALAPAVTEFNYRGNPEKYKVVAEVLGCGSEPHRAVDCVVRFLEKVGLLITLKDLGVEKEKLERLAEDVYLLARGLFLINPVEPSIEDIYKLYEKAYG
>NC_013894.1|WP_012991442.1|396658_397114_+|hypothetical-protein
MYGNPLIPGIPDDAVVNINYVVLKEGVDLDEVMERAAYLCEHVKTYHSDDGFYGGFVVLNTGGVSLEGSTAGKATEHPLKGREILIITFWKDLDSHEKSHRSDRFNQLFKELTQLAESTYEVVYKMLWQGRAYDPETARKAREAKLSAQAG
>NC_013894.1|WP_012991443.1|397115_397466_-|6-carboxytetrahydropterin-synthase
MPWRVVVKRQFNAAHFLTDYHGAPEPLHGHTWCVEIHIRADSLDKGGMGVDFVEIDRFLKDILPDYKLLNEVFEFSPSAENVARWLFEKVKERFPTLEKVVVWETENCGAEYWEEE
>NC_013894.1|WP_012991444.1|397467_397698_-|hypothetical-protein
MRELPVPTHIKEEVIKRVSNKRLAEEAFRYIKLVEKEDGTLWVKEELPSTDNHALMFMVLACVNYTQRLLRGEELD
>NC_013894.1|WP_012991445.1|397694_399086_-|TldD/PmbA-family-protein
MDAKELLKEKAGYILSRLMGSGGQYGEIFYERSRICRMHLEDNRIQKIQWGIDEGVGLRLIKDGNTYYGYTTNITFENLMELAKLVSRGEDHGPIAIGKIYRKSFNPVLLDPDQLDLSYRKEILLRANDAARRLGGRIKQVTAVLMDKTRDIMVINTLGERAEDLQKRVVFFTEVVASDGQQLQRGYESLGGTKGFEIFEEKPPEMIAEIAARRALLLLEAKPAPAGSFTVVMSAQAGGTMIHEAVGHGLEADLVQKGLSVYAGKLGERVASPLVTVLDDATLEGLNGSFGVDDEGVPAQRKVLIENGYLVGFMYDRMTALKEGKSSTGNGRRQSYAHIPIVRMTNTFIQAGDTDPQDIIKDTKKGVLVVKMGGGEVNTVTGDFVFEVMEGYLIENGEITYPIKSATLIGNGPKALQDVDAVGRDLGWAIGTCGKDGQGVPVSDAQPTIRIRSLVVGGTEVIS
>NC_013894.1|WP_012991446.1|399162_399651_+|4-vinyl-reductase-4VR
MKELEAVSKIRVFLKEEGFIVPKKPLQEFYSNIVRLSGLGIGGILHMSGKKAGKIAGNLLKDIMGPGESSVEEIELYLKVFLEEAGICRVKSWEHVDGLIRLRIEGSVFAEGQESKKPVCIPLQGALAGVLEELTGKRWECKELECEAQGKDSCLFELRVEK
>NC_013894.1|WP_012991447.1|399647_400874_+|NAD(P)/FAD-dependent-oxidoreductase
MIKSYDVIVVGSGPGGFNVSLPLARAGLKVALVEGNLLGGTCLNRGCIPKEGMYRIAREVLSLRRKLGTKVKPDFMKALDYVRRRVEKIRENARFLLKREGVEFIEGYAYMVDEQTVKVSRNRYLKGKFLVLACGSLPLEEPSVEDVLTGKLVPKGKVMVVGSGASACELAFILSVFGFDTYLKVQDRLLKDYPVEEDIVEKLERELELCGVKITTTEVDADIRIMATGRRPGLHRELFPFLQMDEDGYVKVDDTMRTNLPYVYAVGDVTRPMGATHALAKARVACQAILGLETKYEPHRVPTVICSALELAFVGKGTKGKKYIKTFNANTKSYVNGWGGVVQLIVDEDGRLSHVTLLGVDVSEVINAVCPFIDNPLWYDRMYSMVFSHPSLCEIFTDFAQDVFLPRD

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Crispr_ID: NC_013894_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013894_5

1389508-1389604

Orphan

Consensus_repeat	Method
ATCAATCAATTACTTATACATCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013894_5

>merge|NC_013894|5|1389508-1389604|CRISPRCasFinder
ATCAATCAATTACTTATACATCTAAGCAGTTAGGTATTTCTTCTGAAGGTCTTAATTCCAATATTTCTAGTTATCAATCAATTACTTATACATTTAA

>NC_013894|5|5|1389508-1389604|CRISPRCasFinder
ATCAATCAATTACTTATACATCTAA	GCAGTTAGGTATTTCTTCTGAAGGTCTTAATTCCAATATTTCTAGTT
ATCAATCAATTACTTATACATTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013894.1\|WP_012992524.1\|1391314_1392115_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012992532.1\|1398353_1398989_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|273783
NC_013894.1\|WP_012992529.1\|1396444_1397053_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NC_013894.1\|WP_148209107.1\|1392071_1392473_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274186
NC_013894.1\|WP_012992520.1\|1387072_1387780_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NC_013894.1\|WP_012992531.1\|1398157_1398364_+\|DUF2892-domain-containing-protein	unknown	unknown	gnl\|CDD\|378561
NC_013894.1\|WP_012992516.1\|1383543_1384296_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_013894.1\|WP_012992513.1\|1380563_1381391_+\|heme-A-synthase	unknown	unknown	gnl\|CDD\|224528
NC_013894.1\|WP_012992528.1\|1395340_1396384_+\|hypothetical-protein	unknown	unknown	unknown
NC_013894.1\|WP_012992517.1\|1384307_1385177_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|376546
NC_013894.1\|WP_012992530.1\|1397082_1398132_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_013894.1\|WP_012992521.1\|1387801_1388350_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_013894.1\|WP_012992515.1\|1382285_1383572_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238830
NC_013894.1\|WP_012992527.1\|1393957_1395322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379080
NC_013894.1\|WP_012992522.1\|1388349_1389105_+\|ChaN-family-lipoprotein	unknown	unknown	gnl\|CDD\|377239
NC_013894.1\|WP_012992518.1\|1385263_1386100_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NC_013894.1\|WP_012992514.1\|1381392_1382283_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NC_013894.1\|WP_012992533.1\|1398942_1399599_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273953
NC_013894.1\|WP_174248495.1\|1392630_1393968_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133049
NC_013894.1\|WP_012992519.1\|1386212_1387073_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491

Protein	Function_ID	Function_description	E-value
NC_013894.1\|WP_012992532.1\|1398353_1398989_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|273783	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam00561). Members of this family are restricted to the Proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	4.17507e-20
NC_013894.1\|WP_012992529.1\|1396444_1397053_-\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	6.97016e-82
NC_013894.1\|WP_148209107.1\|1392071_1392473_+\|hypothetical-protein	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	3.53295e-10
NC_013894.1\|WP_012992520.1\|1387072_1387780_+\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	2.41714e-143
NC_013894.1\|WP_012992531.1\|1398157_1398364_+\|DUF2892-domain-containing-protein	gnl\|CDD\|378561	pfam11127, DUF2892, Protein of unknown function (DUF2892). This family is conserved in bacteria. The function is not known.	2.84784e-06
NC_013894.1\|WP_012992516.1\|1383543_1384296_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.0407e-133
NC_013894.1\|WP_012992513.1\|1380563_1381391_+\|heme-A-synthase	gnl\|CDD\|224528	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones].	1.45467e-27
NC_013894.1\|WP_012992517.1\|1384307_1385177_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|376546	pfam01430, HSP33, Hsp33 protein. Hsp33 is a molecular chaperone, distinguished from all other known chaperones by its mode of functional regulation. Its activity is redox regulated. Hsp33 is a cytoplasmically localized protein with highly reactive cysteines that respond quickly to changes in the redox environment. Oxidising conditions like H2O2 cause disulfide bonds to form in Hsp33, a process that leads to the activation of its chaperone function.	8.40444e-80
NC_013894.1\|WP_012992530.1\|1397082_1398132_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	5.94807e-168
NC_013894.1\|WP_012992521.1\|1387801_1388350_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	5.3058e-86
NC_013894.1\|WP_012992515.1\|1382285_1383572_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238830	cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.	2.27891e-08
NC_013894.1\|WP_012992527.1\|1393957_1395322_+\|hypothetical-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	0.00401106
NC_013894.1\|WP_012992522.1\|1388349_1389105_+\|ChaN-family-lipoprotein	gnl\|CDD\|377239	pfam04187, Cofac_haem_bdg, Haem-binding uptake, Tiki superfamily, ChaN. This is a family of putative bacterial lipoproteins necessary for the uptake of haem-iron. The structure of UniProtKB:Q0PBW2, Structure 2g5g, comprises a large parallel beta-sheet with flanking alpha-helices and a smaller domain consisting of alpha-helices. Two cofacial haem groups (~3.5 Angstom apart with an inter-iron distance of 4.4 Angstrom) bind in a pocket formed by a dimer of two ChaN monomers.	1.71753e-59
NC_013894.1\|WP_012992518.1\|1385263_1386100_+\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	9.57871e-154
NC_013894.1\|WP_012992514.1\|1381392_1382283_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	9.1917e-114
NC_013894.1\|WP_012992533.1\|1398942_1399599_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	5.85808e-23
NC_013894.1\|WP_174248495.1\|1392630_1393968_+\|glycosyltransferase	gnl\|CDD\|133049	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of glucan.	3.01574e-158
NC_013894.1\|WP_012992519.1\|1386212_1387073_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	6.47502e-124

>NC_013894.1|WP_012992522.1|1388349_1389105_+|ChaN-family-lipoprotein
MLSLLLTISLLIGDARVIYIPEEHTSKEDHAFQLEVIRKIWESGEKLVIAMEMFQQPFQTFLDQYISCDISEEEMLQKTQYRKRWGYDPSFYAPIWRYAKEKGIKIYAINIPTELVKKVREEGLEKVRDPALPYPPMEPTQQEKDLLLGVLKEHPKVDVHSFLDVQTAWDSGMALAIARILEKEKDSRVVVLVGGMHAPSLEEGVPRRVALLVPGVKQKILRRENYQRLFSMDLSKDRSSANSMRDPNCRP
>NC_013894.1|WP_012992521.1|1387801_1388350_+|ribosome-recycling-factor
MLEDIFKSAEEDMKKAVNHFKNEIAGLRTGRASTALVEELKVDYYGSKVPIKQLGSITIPEPNQILIQVWDSNAVSAIEKAIMENLQLTPQKQGNTLRITLPPPTEERRREMVRLLHKMAEEARVAVRNARRDAKEMIEDMEGISEDEIKRALERLQKLTDKYIDEINKLTEAKETEILGKI
>NC_013894.1|WP_012992520.1|1387072_1387780_+|UMP-kinase
MYTRVLVKLSGEAFAGKQGFGIDSEFLAYISEEIKSLVTAGVQTAVVIGGGNIFRGLEGTSMGIDRATGDYMGMLATVINALALQSALERLAQIPTRVLSAIEMRQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFSTDTAAALRAAEIEAQLLIKATKVDGIYTGDPQKDPNVEFIEEITYKEVINRNLRVMDHTALTLCMENKIPIMVLNIHKPGNLLKAVSGQRVGSLVRE
>NC_013894.1|WP_012992519.1|1386212_1387073_+|elongation-factor-Ts
MITSDLVKKLREMTGAGMLDCKKALEEAGGDLEKAKEILRIKGLAKAEKKAGRETKEGVIYAYVSEDRKRGVLLELNCETDFVAKNEEFSRLALQLAKHIANVDENSDRQGTGEDIASQPFYQDPSIKVDELIKSAIAKIGENIRLSRWTRYDAKGYVHAYVHGIGRVGVLLEFEAPTLEEKVLRTVQDIAMQIAAMKAEYVKVEDIPADVLERERRILAEQTRQEGKPENLIDRIVEGKLKRFYQEKVLLEQAFIKDEKKTVKQYLEEVGNVHIVRFVRYELGGL
>NC_013894.1|WP_012992518.1|1385263_1386100_+|30S-ribosomal-protein-S2
MAVVSMRELLEAGVHFGHTKSRWNPKMAPFLYGVRHDIHIIDLNKTLVYLEQAYHFVADSVARGAEVLFVGTKKQAKDVIKEEAERAGVHYINERWVGGLLTNFRTVRKSILKLKTLERMEAEGVFDVLPKKEVRALKRKMERLRKLYGGIVNMTRLPDIIWVVDTVREHIAVQEARKLGITVVAILDSNCDPDLVDYPVPGNDDAIKSIKLLTSKIADAIIEGKTRRESLGEEAATMEVVRKRVITVEEEERALFEKAMEMSEKYEYIDKGAEEDMD
>NC_013894.1|WP_012992517.1|1384307_1385177_+|Hsp33-family-molecular-chaperone-HslO
MLYRELNDESRKELRDYFEDRDYMVIAVPRHEPIRMYVVRANRTVETARRVHNLAPPEALLLGEALLAALLLSSLVKHATHQKVLFKLNLEEGSVVAEADGKGRVRGFIEGQVTGYWKGDLTVIKELRLGVPYTSIVPVVGNSVKDTLQYYFHQSEQIKTVVDMAVKLDDEGRVRFAGAYMVQMMGGTSPKAEELMEKRLKELPPLEKFLEEGKRPEDIATEVLGDMEPRLVGLKEVEYYCPCTEDIAKASLLLLSEEELNEVLQQGPAEVVCKFCGRIYRFTREELML
>NC_013894.1|WP_012992516.1|1383543_1384296_+|5'/3'-nucleotidase-SurE
MPVFLITNDDGYFSPGIQALREELKKLGRVVTVAPDRNLSGVGHSLTFNMPLRIRRVDEDFWTVIGGTPADCVHLGYYVILEGKKPDLVCSGINEGPNLGEDITYSGTVSGAMEGRILGIPSVAFSAFGRDEVDFRSVAQVCKEVVLKVLQYGMPEDTYLNVNIPNLPPDEIRGFMFTRQGKRAYKEKVLRLLDPQRRPLYWITAEEFGWELEEGTDYWAVYHGYVSITPLQLDLTNHRALRSLQERWRV
>NC_013894.1|WP_012992515.1|1382285_1383572_+|cbb3-type-cytochrome-c-oxidase-subunit-I
MERWWFYLAVLSLGVGGFFAFLVAMARTPGVEHLFPPGYFYHALTGHVDLAIVVFLLSFTMLLWNQYYPKEEKVTFPLASLGAVLIGMSSLLGLGLPVSNNYLPTLVHPLFFTGAGLFFTAFWLSAFLRLKEAIADFRSDDPKRSSLSTSVILSLLMLVAFVFSSLRAGDPAEVYRFYERLYWAPGHIHQFINGSVLIHTWYRLLYLTGKGVRSSRLWMSFVPFLLFGVLLTSVPLVFSDPISRDAIVFTEISYAVGLGIPIFFHMFYVVRNLRPLSFTHLYPTALFISLLLYFLGVIIAYGGIKADLRVPAHYHGAVTSLTLALMTLSYHLMQEWGILRRISRSFSLTQVYLYGVGMVLFILGLYLAGLKGAPRKTYGTAYTQDPFVLGALLLMGLGTLLAVIGGVMFVLYVLKSTLSHARFSYNQR
>NC_013894.1|WP_012992514.1|1381392_1382283_+|protoheme-IX-farnesyltransferase
MVVKSFGKVAEYSHVVRDCLVLTKPGIVLLVLITTLTGMYIAKRGFPEPSLVLWTLVGTGLASAGSASLNQFLDRDIDARMSRTSHRPLPSGSLPPLVALIMGVLLLIASLTVMVLAVNLLAAFLTGLASLFYVVVYTLLFKRRSPWAVEIGGVSGAMPPVIGYAAVKGTLTPEAAILFAIMFFWQPPHSWVLAIKYLEDYRKAGIPVLPVVKGVEYTKIRTLLYTSALLPLSLLPYFYGMAGKVYLLGAFVLSALYIILTLRFVFSRRENGMFLFTYSIFYIALLFSLMVFNMER
>NC_013894.1|WP_012992513.1|1380563_1381391_+|heme-A-synthase
MRRALLLLAILFTYVVMIWGGMVRSTDSGLACPSWPLCYGDFSLPKDLSARMEMGHRTVSGLAGLFVFLSTVAVWRNIGGPAKLTTGIALLFTLSAALTGMKMIKSEAPHLKYVEHMLLESFHIYESMIILGALVVTYRLLYKKEGESYIPIWVYVPALVTIMTGVLVRYTGSGEACGHEWPTCAGYLVPPMDDWKVALQFTHRNLAYITWLMFLAYLLRFRDKLALFAFLLINVQFVFAVSMVLSGFFLPLVFLDTASGFFLFAFLTYHVRVRL
>NC_013894.1|WP_012992524.1|1391314_1392115_+|hypothetical-protein
MKKFLLIIIFFAIFYPIKRIYAGAFGREEGELFISLTPRFYKADKFFDKNGNRKPIGCSFKKEEIELYAEYGISSKDTLIFKVPYQWLSCGDAKTSGFSDIEAGIIRKLVKNNSYVLSAYGVAILPTGYSIHDNPRLGYGRIGLEGGILYGRGFGKGFIDTGIGYRYYFGYPSDQIRGYLMGGYSITKNFQLLGIIDAQIGLGNGKRKNLGYNITLEPDYKLIQIYIGPRILLNNNISINFGLHKVIFGRNTGDGAGAYGSLWIKF
>NC_013894.1|WP_148209107.1|1392071_1392473_+|hypothetical-protein
MMGQEPMGAYGSNFKKIGQILIEKGLITQQQLEEALQYQRKYGGRLGWILASLGYIKRLDLYKVLSEQLNLELNFYPNVTKFIDLNFLKKFDPYILARYECIPAKEEGENVLVYTSYPDSEKLREFSEKYLKK
>NC_013894.1|WP_174248495.1|1392630_1393968_+|glycosyltransferase
MAILIFLALLWLYFDPISLAIFSLSIVQFFYLISLLFKFIVSLAGATTEMTQFITDEEVKNLEEENLPVYTILVPVYKEPEVIGILINSLKKMDYPQNKLDIILLLEEDDKETLEAAKAHQPPANWRFIIVPTSQPKTKPKACNYGLFFARGKYLTIYDAEDIPEPDQLKKAVIAFKKGGDKYICFQAQLNYFNKDENFLTKMFTLEYSYWFDYLLPGLFKLGLPIPLGGTSNHFDVEKLKEIGAWDSFNTTEDADLGVRAFSKGYKVGVINSTTYEEANARYRNWIRQRSRWIKGYMQTWLVHSRNLGKLYKAVGLKGFIGFNLLIGGTVFTFLVNPIMWFIFIVWLITQTQILQPIFPPVVLYISLFNLLFGNFIGIYLNMIAVFRRRYYELLPYAFLNPVYWVLHSIASYKALYELFVKPFYWQKTQHGITKYKPPIISHAS
>NC_013894.1|WP_012992527.1|1393957_1395322_+|hypothetical-protein
MLAKKSFWYFTVFLTFFALYYIILSVFIEEKNYIHLNLLFFAEKAKLATEGMPPRLENIGFVYPPLVFLFFLIFKNIPTAVAFLSASINTIFLFTVQRKFSLYLSILFLLSFLYLFLSTQMPSLLLFYMFLIWTVIFIIRFIEERLSLYLFLAGLLYGFSFFVDFRTVFLIPFWILLFVFLIRTENWKEKIAIMTVFNTPIFFFSLSWMYLNWVFVGDPLNFIHSKYSYFKSFPSSSILKISFPLIIFYFLPFIFPYVFGFFYLKNKTYKFLYLLPAYTFFIFLKLKMIEGFFVNAVLFSIFFMLFYSEAKKLKFVFLITIIFSFVLIPFSPDYNERTFARAILGMKIEENLVEYKKVADFINTRSDGHILMDDSWGFPIVYFSKDTKRFILPYMYEFYSAITSPQLFAEWIIVNIASESDRVLNSLPELKSEKSIYYYPVYKDEEIKIYMRLK
>NC_013894.1|WP_012992528.1|1395340_1396384_+|hypothetical-protein
MNRREFIIALGSLVLSSCGGSSSNSSGSISFNSIPFGLGEDPAKLIDAQDPDGRRVFDLLRPDFVQAWLNGAVDTNGNVYSPSMSYFEQWYNQGKFKTWSSLNLGFMIISWENYDGQNPALGGPTYGNYHISRQFLEDVEKLCIWLKDYKSQLYFVLAAEQSTYTACRYDRTCSNPLAYSDVINNTTEEYFSRLRDNLLSAIDIIQSYHPSAYVGTCFGGWLVEFERGQSFINYFKPVIEKSNAIFFQSMMDKKSEENNGYGNPQRILANLNYFSRFGKPVGLAFYMPHNKRADVIADDMIQMSQQDYIKTLKKYRLLTFGFMEYGVLKDNLFDCLYKTSHFRKLLR
>NC_013894.1|WP_012992529.1|1396444_1397053_-|recombination-protein-RecR
MAYQEYIPPVLKRALEVLTYIPTYGERSASRFVYNFLKLSPEERDEILKTLFELSRSARKCSECGLVSDTDPCRICSDTKRNKRFLCVVEESQDAYAIERLERYTGVYHVLGGRIAPLEGISAEDLNIEGLLRRIENYGVKEVILATNPNVEGEATANYILSLIKKRFPSVKVSRISHGLQFGSLIELADDLSLERSIENRR
>NC_013894.1|WP_012992530.1|1397082_1398132_+|tRNA-2-thiouridine(34)-synthase-MnmA
MRIAVGMSGGVDSSVTALLLKEEGHEVIGVTLRFYKAVCNTEDLRVCCSPQDVKDAVLVSQRLGIPHITLDWEKIFYERVIKYFVEGYKEGITPNPCAVCNREVKTGFLARYLRNVALIDRLATGHYVRKIQYMGYSLLARGKDTTRDQSYFMALVRGEDIPLLEFPLGDKTKEEVRKIAEEKGLPTARKRDSQEVCFLMGRSPGEYMKDILGEREGPIVYKGKVVGKHRGYYAYTVGQRRGLSVALGKPVYVTGIDPITNTVFVGDEEELYKDWLLLEDINFHLPMHLWSRPAVQTRYRSKTVEVRDIEKLPNGYKVYLKEPVRAITPGQVCAFYEGDVLLGGGIIRI
>NC_013894.1|WP_012992531.1|1398157_1398364_+|DUF2892-domain-containing-protein
MTMDRVLRLTSGGVLLLVFLVAILPSDIHWFWKAFILFMAINQIQSAFTNWCPVMVLYRKMGIKECEC
>NC_013894.1|WP_012992532.1|1398353_1398989_+|alpha/beta-fold-hydrolase
MSANVFLHGWGFSSKVFRHFEGIKIDLPYHGRSSLRYTSLDKLVEEIALRVPPHSLLVGWSLGGSVALLLAHRFPKKVKSLILIGTTAHFRRYWPEKNLRGFLLKVRQKRDSFLWHFRRLAYGREFTDALDIDGATELLEDYMNLNLFPLLPTIRKPVIILHGVLDQVVPLRAALDLYRRLPKAKFLSFAGGHFPLHEDTIRKVLKGVSQL
>NC_013894.1|WP_012992533.1|1398942_1399599_+|methyltransferase-domain-containing-protein
MRILSVRFSRACHSYDRWAIPQRESAQILRSIRPLYGRVLDAGCGTGMASQGVAEAVGVDISSGMARRYRETGRTAVVGDLHHLPFKDKSFDFAISNFSLHWTDLTKSIPEILRVVRKGFLGALPVEGSLPHTGFPFPQKDVVLYHLEKWGGKIAVSFIREIAIPFRGMDLVRFLHYTGSTYNPAREPGRVLSRKALADLISKIDSTSFVVLFFYCEV

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Crispr_ID: NC_013894_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013894_6

1496455-1500535

Orphan

Consensus_repeat	Method
CTTTCAACTCCACACGGTACATTAGAAAC	PILER-CR
CTTTCAACTCCACACGGTACATTAGAAAC	CRISPRCasFinder
CTTTCAACTCCACACGGTACATTAGAAAC	CRT

60 spacers

The CRISPR arrays of NC_013894_6

>merge|NC_013894|6|1496455-1500535|PILER-CR,CRISPRCasFinder,CRT
CTTTCAACTCCACACGGTACATTAGAAACACTATCCTGAACTTCTCACACAGTATGCAAAACAGCGCTTTCAACTCCACACGGTACATTAGAAACTGCTGGACAAGGCACTGGCAAGGATGAGACAAAGATCTTTCAACTCCACACGGTACATTAGAAACTACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAGCTTTCAACTCCACACGGTACATTAGAAACTATCAATGACTTGAGGGCTGACACCACCTTCTTTTTTCTTTCAACTCCACACGGTACATTAGAAACGTGGTAGAGAAAGAGGTCTCTTTGTAGCAATTGATTGCACTTTCAACTCCACACGGTACATTAGAAACTACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAGCTTTCAACTCCACACGGTACATTAGAAACGGGAACGAGGGTGGAGCTTGGTAGCATAGTACAAGAGACTTTCAACTCCACACGGTACATTAGAAACCCGCCATTACCCATTTTGGGAAGTGATGGCGGAAGCAACTTTCAACTCCACACGGTACATTAGAAACGAGATAATGCAGATTGTTTTACAGTACAATGAGCAACCTTTCAACTCCACACGGTACATTAGAAACCCTTGAGGAGCTAATCAGGGAAGAGCTTGGTCCGATGGGGGTCTTTCAACTCCACACGGTACATTAGAAACTATCCCATCTCCCCAGCTATCTTTTCAAGCACAGCAAACTTTCAACTCCACACGGTACATTAGAAACCATTAGCTTTTTCATGCCTAAGTCATTAAAAGAGGAGCCTTTCAACTCCACACGGTACATTAGAAACGCCAGTATGCATATATAATGTGTAGGAAAATACCTACTTTCAACTCCACACGGTACATTAGAAACACGAGTCCACCGCCAGAGTATTAAGTACATTGTTGGGGACTTTCAACTCCACACGGTACATTAGAAACAAAGATACAAAGCCCCGCCAGTAGCTATGCAAACATACTTTCAACTCCACACGGTACATTAGAAACAGAAAATTACGGAAATGGAGAATGATCCAAAACTCATGCTTTCAACTCCACACGGTACATTAGAAACCCACACGGTACATTAGAAACGTCCGAGATCCTCTTTGAAGAAGTGTTGTATCTCCTGCGCTTTCAACTCCACACGGTACATTAGAAACAAAAAGGAAGAAGGGATAATAGTTGGTAGCGTGGACATAACTTTCAACTCCACACGGTACATTAGAAACTTGTCTCACCCCACGGAGATGTGATAGGATCAGCATCCTTTCAACTCCACACGGTACATTAGAAACTCACCAAACACCTTAATCCCAAAAGCTTCATAGAGTTTCCTTTCAACTCCACACGGTACATTAGAAACACTTAGGAGTGGCATGCCTGCCTGATAGGTCTTGCCATATTCTTTCAACTCCACACGGTACATTAGAAACGCAACGCCTTCCCGCTTTTTACAAAAGCAAAAAACCAAACTTTCAACTCCACACGGTACATTAGAAACGCTGAGGAAGCACTCGTGGATGAGGATAACAGCATAGCTTTCAACTCCACACGGTACATTAGAAACATAGTGAAAAAGAGGCTCCCTTCATTCAATCTCCACCAACGCTTTCAACTCCACACGGTACATTAGAAACTCATAAACCGCCCCAGTTTGCACTGCTATCCTCAGCTTTCAACTCCACACGGTACATTAGAAACGACCCCTCAGTTCTTGCCTCACTTCCTCAATGCTGGACTTTCAACTCCACACGGTACATTAGAAACCTTGTTATCTCATGAGTTTCCCCTATCTTCACAATGCTTTCAACTCCACACGGTACATTAGAAACATCCCTATACACCACTAACAGCTTTTGTGGTTTAGTAGAGAACTTTCAACTCCACACGGTACATTAGAAACGGGTAGTGCGGAAAGGCTTGAGAAGAAGTTTTTAAGACTTTCAACTCCACACGGTACATTAGAAACAGACAGGAGGTGAGAGAAATGAAGAAGTTCATTTTAACTTTCAACTCCACACGGTACATTAGAAACCTGAAAGGGAAGATTGACCCCCACTCCTAAGGCACTCTTTCAACTCCACACGGTACATTAGAAACTAATTCCACTATCAGAATGGTTCTTGAAGAAGTTCAACTTTCAACTCCACACGGTACATTAGAAACTGAAGGAAGAGAAGGAAGTTATACCTTCCATTTTTACTTTCAACTCCACACGGTACATTAGAAACTTGAGTAGCCCCTTTGCTTGCATACTCTCGTTAGCCTGCCCTTTCAACTCCACACGGTACATTAGAAACAAAACAAGTTCTACGAGCTTTACAGTGATGCTAAGAGCTTTCAACTCCACACGGTACATTAGAAACTTTTTCAACAAACTACTTGTATTTGTCTCAGTATCATGCTTTCAACTCCACACGGTACATTAGAAACTGAAAAGTAGTTCTGCTTTCATTACAAAAAAACTTTTAAACTTTCAACTCCACACGGTACATTAGAAACAAATCAAGTAGCAATTAAAAAAATCCAAATCCAATAAAACTTTCAACTCCACACGGTACATTAGAAACTATCGCTGAACACCTCTCCAGTTAGAGTGCATCTGAAGCTTTCAACTCCACACGGTACATTAGAAACTTCAAGTATTTACAGAGAGATGCAGGATATCTCTTAGCTTTCAACTCCACACGGTACATTAGAAACCCTTGGAGGGTCAGAAAGGTTTGATGCATAACAAGTATGCTTTCAACTCCACACGGTACATTAGAAACTCCTGTGAGGGATGTAGAGGTGGAAAGTAAAGACTTTTCAACTTTCAACTCCACACGGTACATTAGAAACAAGGGATTGAAACTGAAAAATCCGCCACCACAGAACACTTTCAACTCCACACGGTACATTAGAAACATGCTTGGAAAGGCTCTGAAAGAAGGAACTCTCACAACTTTCAACTCCACACGGTACATTAGAAACGAAGATGGGCTAAATGTTTTCGTGGATACTGCAGAAAACTTTCAACTCCACACGGTACATTAGAAACTCTGTTCCTGTCAGTCCTTCCTCTTTCTCTGATACGTCAGCTTTCAACTCCACACGGTACATTAGAAACTGTTGTAGGGGTGGCGGGTTCTGTCTGTTGTTGCGCTTTCAACTCCACACGGTACATTAGAAACCTGAATTCTGTACCTTTCCAACTTTTTTCTGTTGTTCCTTTCAACTCCACACGGTACATTAGAAACAATCTCAGTGTTTGCTGGTACATCCGCCCCGAACGGAAAACTCTTTCAACTCCACACGGTACATTAGAAACGGGCAAAGGAAGGAAGCGTAAAATAGTTAAAAAACTTCAAACTTTCAACTCCACACGGTACATTAGAAACGTGGTTGAAGTATCTGCTGGAAGAAGGGTGACGATACTGACTTTCAACTCCACACGGTACATTAGAAACCAGAGTGATGTCACACAAGATGTGAGACTTGTTGCATCCTTTCAACTCCACACGGTACATTAGAAACTGAAGCTGATGAGGAATGCATCAAAGAAAATTTCAGGACTTTCAACTCCACACGGTACATTAGAAACACTCTCTCCACCGCATCAGCACCACCTGTGTCCTCTGCTTTCAACTCCACACGGTACATTAGAAACCACGGAAAAACCGCACCGCACCGAAAAAGGTTAGGAAGCTTTCAACTCCACACGGTACATTAGAAACCATGTATCTTTTCCACCGCACAGTTTCCAGAGACTCACTTTCAACTCCACACGGTACATTAGAAACTTGCGAATTTGTCCGCTTACGCGGACCGAACCTTTAAGCTTTCAACTCCACACGGTACATTAGAAACAATGATTTTGTTTCGTTGTATACGCGTGTCTTCAATGACTTTCAACTCCACACGGTACATTAGAAACGGATACAAGGTACAAGATAGTACAGGTTGCAATAGAGCTCTTTCAACTCCACACGGTACATTAGAAACTGTAGTCTGTACTTCTTTAATAACCTGTTCTATTGATGCCTTTCAACTCCACACGGTACATTAGAAAC

>NC_013894|6|7|1496455-1500467|PILER-CR
CTTTCAACTCCACACGGTACATTAGAAAC	ACTATCCTGAACTTCTCACACAGTATGCAAAACAGCG
CTTTCAACTCCACACGGTACATTAGAAAC	TGCTGGACAAGGCACTGGCAAGGATGAGACAAAGAT
CTTTCAACTCCACACGGTACATTAGAAAC	TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG
CTTTCAACTCCACACGGTACATTAGAAAC	TATCAATGACTTGAGGGCTGACACCACCTTCTTTTTT
CTTTCAACTCCACACGGTACATTAGAAAC	GTGGTAGAGAAAGAGGTCTCTTTGTAGCAATTGATTGCA
CTTTCAACTCCACACGGTACATTAGAAAC	TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG
CTTTCAACTCCACACGGTACATTAGAAAC	GGGAACGAGGGTGGAGCTTGGTAGCATAGTACAAGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	CCGCCATTACCCATTTTGGGAAGTGATGGCGGAAGCAA
CTTTCAACTCCACACGGTACATTAGAAAC	GAGATAATGCAGATTGTTTTACAGTACAATGAGCAAC
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTGAGGAGCTAATCAGGGAAGAGCTTGGTCCGATGGGGGT
CTTTCAACTCCACACGGTACATTAGAAAC	TATCCCATCTCCCCAGCTATCTTTTCAAGCACAGCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	CATTAGCTTTTTCATGCCTAAGTCATTAAAAGAGGAGC
CTTTCAACTCCACACGGTACATTAGAAAC	GCCAGTATGCATATATAATGTGTAGGAAAATACCTA
CTTTCAACTCCACACGGTACATTAGAAAC	ACGAGTCCACCGCCAGAGTATTAAGTACATTGTTGGGGA
CTTTCAACTCCACACGGTACATTAGAAAC	AAAGATACAAAGCCCCGCCAGTAGCTATGCAAACATA
CTTTCAACTCCACACGGTACATTAGAAAC	AGAAAATTACGGAAATGGAGAATGATCCAAAACTCATG
CTTTCAACTCCACACGGTACATTAGAAAC	CCACACGGTACATTAGAAACGTCCGAGATCCTCTTTGAAGAAGTGTTGTATCTCCTGCG
CTTTCAACTCCACACGGTACATTAGAAAC	AAAAAGGAAGAAGGGATAATAGTTGGTAGCGTGGACATAA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGTCTCACCCCACGGAGATGTGATAGGATCAGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TCACCAAACACCTTAATCCCAAAAGCTTCATAGAGTTTC
CTTTCAACTCCACACGGTACATTAGAAAC	ACTTAGGAGTGGCATGCCTGCCTGATAGGTCTTGCCATATT
CTTTCAACTCCACACGGTACATTAGAAAC	GCAACGCCTTCCCGCTTTTTACAAAAGCAAAAAACCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	GCTGAGGAAGCACTCGTGGATGAGGATAACAGCATAG
CTTTCAACTCCACACGGTACATTAGAAAC	ATAGTGAAAAAGAGGCTCCCTTCATTCAATCTCCACCAACG
CTTTCAACTCCACACGGTACATTAGAAAC	TCATAAACCGCCCCAGTTTGCACTGCTATCCTCAG
CTTTCAACTCCACACGGTACATTAGAAAC	GACCCCTCAGTTCTTGCCTCACTTCCTCAATGCTGGA
CTTTCAACTCCACACGGTACATTAGAAAC	CTTGTTATCTCATGAGTTTCCCCTATCTTCACAATG
CTTTCAACTCCACACGGTACATTAGAAAC	ATCCCTATACACCACTAACAGCTTTTGTGGTTTAGTAGAGAA
CTTTCAACTCCACACGGTACATTAGAAAC	GGGTAGTGCGGAAAGGCTTGAGAAGAAGTTTTTAAGA
CTTTCAACTCCACACGGTACATTAGAAAC	AGACAGGAGGTGAGAGAAATGAAGAAGTTCATTTTAA
CTTTCAACTCCACACGGTACATTAGAAAC	CTGAAAGGGAAGATTGACCCCCACTCCTAAGGCACT
CTTTCAACTCCACACGGTACATTAGAAAC	TAATTCCACTATCAGAATGGTTCTTGAAGAAGTTCAA
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAGGAAGAGAAGGAAGTTATACCTTCCATTTTTA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGAGTAGCCCCTTTGCTTGCATACTCTCGTTAGCCTGCC
CTTTCAACTCCACACGGTACATTAGAAAC	AAAACAAGTTCTACGAGCTTTACAGTGATGCTAAGAG
CTTTCAACTCCACACGGTACATTAGAAAC	TTTTTCAACAAACTACTTGTATTTGTCTCAGTATCATG
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAAAGTAGTTCTGCTTTCATTACAAAAAAACTTTTAAA
CTTTCAACTCCACACGGTACATTAGAAAC	AAATCAAGTAGCAATTAAAAAAATCCAAATCCAATAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	TATCGCTGAACACCTCTCCAGTTAGAGTGCATCTGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	TTCAAGTATTTACAGAGAGATGCAGGATATCTCTTAG
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTGGAGGGTCAGAAAGGTTTGATGCATAACAAGTATG
CTTTCAACTCCACACGGTACATTAGAAAC	TCCTGTGAGGGATGTAGAGGTGGAAAGTAAAGACTTTTCAA
CTTTCAACTCCACACGGTACATTAGAAAC	AAGGGATTGAAACTGAAAAATCCGCCACCACAGAACA
CTTTCAACTCCACACGGTACATTAGAAAC	ATGCTTGGAAAGGCTCTGAAAGAAGGAACTCTCACAA
CTTTCAACTCCACACGGTACATTAGAAAC	GAAGATGGGCTAAATGTTTTCGTGGATACTGCAGAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	TCTGTTCCTGTCAGTCCTTCCTCTTTCTCTGATACGTCAG
CTTTCAACTCCACACGGTACATTAGAAAC	TGTTGTAGGGGTGGCGGGTTCTGTCTGTTGTTGCG
CTTTCAACTCCACACGGTACATTAGAAAC	CTGAATTCTGTACCTTTCCAACTTTTTTCTGTTGTTC
CTTTCAACTCCACACGGTACATTAGAAAC	AATCTCAGTGTTTGCTGGTACATCCGCCCCGAACGGAAAACT
CTTTCAACTCCACACGGTACATTAGAAAC	GGGCAAAGGAAGGAAGCGTAAAATAGTTAAAAAACTTCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	GTGGTTGAAGTATCTGCTGGAAGAAGGGTGACGATACTGA
CTTTCAACTCCACACGGTACATTAGAAAC	CAGAGTGATGTCACACAAGATGTGAGACTTGTTGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAGCTGATGAGGAATGCATCAAAGAAAATTTCAGGA
CTTTCAACTCCACACGGTACATTAGAAAC	ACTCTCTCCACCGCATCAGCACCACCTGTGTCCTCTG
CTTTCAACTCCACACGGTACATTAGAAAC	CACGGAAAAACCGCACCGCACCGAAAAAGGTTAGGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	CATGTATCTTTTCCACCGCACAGTTTCCAGAGACTCA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGCGAATTTGTCCGCTTACGCGGACCGAACCTTTAAG
CTTTCAACTCCACACGGTACATTAGAAAC	AATGATTTTGTTTCGTTGTATACGCGTGTCTTCAATGA
CTTTCAACTCCACACGGTACATTAGAAAC	GGATACAAGGTACAAGATAGTACAGGTTGCAATAGAGCT
CTTTCAACTCCACACGGTACATTAGAAAC

>NC_013894|6|6|1496455-1500535|CRISPRCasFinder
CTTTCAACTCCACACGGTACATTAGAAAC	ACTATCCTGAACTTCTCACACAGTATGCAAAACAGCG
CTTTCAACTCCACACGGTACATTAGAAAC	TGCTGGACAAGGCACTGGCAAGGATGAGACAAAGAT
CTTTCAACTCCACACGGTACATTAGAAAC	TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG
CTTTCAACTCCACACGGTACATTAGAAAC	TATCAATGACTTGAGGGCTGACACCACCTTCTTTTTT
CTTTCAACTCCACACGGTACATTAGAAAC	GTGGTAGAGAAAGAGGTCTCTTTGTAGCAATTGATTGCA
CTTTCAACTCCACACGGTACATTAGAAAC	TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG
CTTTCAACTCCACACGGTACATTAGAAAC	GGGAACGAGGGTGGAGCTTGGTAGCATAGTACAAGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	CCGCCATTACCCATTTTGGGAAGTGATGGCGGAAGCAA
CTTTCAACTCCACACGGTACATTAGAAAC	GAGATAATGCAGATTGTTTTACAGTACAATGAGCAAC
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTGAGGAGCTAATCAGGGAAGAGCTTGGTCCGATGGGGGT
CTTTCAACTCCACACGGTACATTAGAAAC	TATCCCATCTCCCCAGCTATCTTTTCAAGCACAGCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	CATTAGCTTTTTCATGCCTAAGTCATTAAAAGAGGAGC
CTTTCAACTCCACACGGTACATTAGAAAC	GCCAGTATGCATATATAATGTGTAGGAAAATACCTA
CTTTCAACTCCACACGGTACATTAGAAAC	ACGAGTCCACCGCCAGAGTATTAAGTACATTGTTGGGGA
CTTTCAACTCCACACGGTACATTAGAAAC	AAAGATACAAAGCCCCGCCAGTAGCTATGCAAACATA
CTTTCAACTCCACACGGTACATTAGAAAC	AGAAAATTACGGAAATGGAGAATGATCCAAAACTCATG
CTTTCAACTCCACACGGTACATTAGAAAC	CCACACGGTACATTAGAAACGTCCGAGATCCTCTTTGAAGAAGTGTTGTATCTCCTGCG
CTTTCAACTCCACACGGTACATTAGAAAC	AAAAAGGAAGAAGGGATAATAGTTGGTAGCGTGGACATAA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGTCTCACCCCACGGAGATGTGATAGGATCAGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TCACCAAACACCTTAATCCCAAAAGCTTCATAGAGTTTC
CTTTCAACTCCACACGGTACATTAGAAAC	ACTTAGGAGTGGCATGCCTGCCTGATAGGTCTTGCCATATT
CTTTCAACTCCACACGGTACATTAGAAAC	GCAACGCCTTCCCGCTTTTTACAAAAGCAAAAAACCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	GCTGAGGAAGCACTCGTGGATGAGGATAACAGCATAG
CTTTCAACTCCACACGGTACATTAGAAAC	ATAGTGAAAAAGAGGCTCCCTTCATTCAATCTCCACCAACG
CTTTCAACTCCACACGGTACATTAGAAAC	TCATAAACCGCCCCAGTTTGCACTGCTATCCTCAG
CTTTCAACTCCACACGGTACATTAGAAAC	GACCCCTCAGTTCTTGCCTCACTTCCTCAATGCTGGA
CTTTCAACTCCACACGGTACATTAGAAAC	CTTGTTATCTCATGAGTTTCCCCTATCTTCACAATG
CTTTCAACTCCACACGGTACATTAGAAAC	ATCCCTATACACCACTAACAGCTTTTGTGGTTTAGTAGAGAA
CTTTCAACTCCACACGGTACATTAGAAAC	GGGTAGTGCGGAAAGGCTTGAGAAGAAGTTTTTAAGA
CTTTCAACTCCACACGGTACATTAGAAAC	AGACAGGAGGTGAGAGAAATGAAGAAGTTCATTTTAA
CTTTCAACTCCACACGGTACATTAGAAAC	CTGAAAGGGAAGATTGACCCCCACTCCTAAGGCACT
CTTTCAACTCCACACGGTACATTAGAAAC	TAATTCCACTATCAGAATGGTTCTTGAAGAAGTTCAA
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAGGAAGAGAAGGAAGTTATACCTTCCATTTTTA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGAGTAGCCCCTTTGCTTGCATACTCTCGTTAGCCTGCC
CTTTCAACTCCACACGGTACATTAGAAAC	AAAACAAGTTCTACGAGCTTTACAGTGATGCTAAGAG
CTTTCAACTCCACACGGTACATTAGAAAC	TTTTTCAACAAACTACTTGTATTTGTCTCAGTATCATG
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAAAGTAGTTCTGCTTTCATTACAAAAAAACTTTTAAA
CTTTCAACTCCACACGGTACATTAGAAAC	AAATCAAGTAGCAATTAAAAAAATCCAAATCCAATAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	TATCGCTGAACACCTCTCCAGTTAGAGTGCATCTGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	TTCAAGTATTTACAGAGAGATGCAGGATATCTCTTAG
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTGGAGGGTCAGAAAGGTTTGATGCATAACAAGTATG
CTTTCAACTCCACACGGTACATTAGAAAC	TCCTGTGAGGGATGTAGAGGTGGAAAGTAAAGACTTTTCAA
CTTTCAACTCCACACGGTACATTAGAAAC	AAGGGATTGAAACTGAAAAATCCGCCACCACAGAACA
CTTTCAACTCCACACGGTACATTAGAAAC	ATGCTTGGAAAGGCTCTGAAAGAAGGAACTCTCACAA
CTTTCAACTCCACACGGTACATTAGAAAC	GAAGATGGGCTAAATGTTTTCGTGGATACTGCAGAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	TCTGTTCCTGTCAGTCCTTCCTCTTTCTCTGATACGTCAG
CTTTCAACTCCACACGGTACATTAGAAAC	TGTTGTAGGGGTGGCGGGTTCTGTCTGTTGTTGCG
CTTTCAACTCCACACGGTACATTAGAAAC	CTGAATTCTGTACCTTTCCAACTTTTTTCTGTTGTTC
CTTTCAACTCCACACGGTACATTAGAAAC	AATCTCAGTGTTTGCTGGTACATCCGCCCCGAACGGAAAACT
CTTTCAACTCCACACGGTACATTAGAAAC	GGGCAAAGGAAGGAAGCGTAAAATAGTTAAAAAACTTCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	GTGGTTGAAGTATCTGCTGGAAGAAGGGTGACGATACTGA
CTTTCAACTCCACACGGTACATTAGAAAC	CAGAGTGATGTCACACAAGATGTGAGACTTGTTGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAGCTGATGAGGAATGCATCAAAGAAAATTTCAGGA
CTTTCAACTCCACACGGTACATTAGAAAC	ACTCTCTCCACCGCATCAGCACCACCTGTGTCCTCTG
CTTTCAACTCCACACGGTACATTAGAAAC	CACGGAAAAACCGCACCGCACCGAAAAAGGTTAGGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	CATGTATCTTTTCCACCGCACAGTTTCCAGAGACTCA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGCGAATTTGTCCGCTTACGCGGACCGAACCTTTAAG
CTTTCAACTCCACACGGTACATTAGAAAC	AATGATTTTGTTTCGTTGTATACGCGTGTCTTCAATGA
CTTTCAACTCCACACGGTACATTAGAAAC	GGATACAAGGTACAAGATAGTACAGGTTGCAATAGAGCT
CTTTCAACTCCACACGGTACATTAGAAAC	TGTAGTCTGTACTTCTTTAATAACCTGTTCTATTGATGC
CTTTCAACTCCACACGGTACATTAGAAAC

>NC_013894|6|4|1496455-1500535|CRT
CTTTCAACTCCACACGGTACATTAGAAAC	ACTATCCTGAACTTCTCACACAGTATGCAAAACAGCG
CTTTCAACTCCACACGGTACATTAGAAAC	TGCTGGACAAGGCACTGGCAAGGATGAGACAAAGAT
CTTTCAACTCCACACGGTACATTAGAAAC	TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG
CTTTCAACTCCACACGGTACATTAGAAAC	TATCAATGACTTGAGGGCTGACACCACCTTCTTTTTT
CTTTCAACTCCACACGGTACATTAGAAAC	GTGGTAGAGAAAGAGGTCTCTTTGTAGCAATTGATTGCA
CTTTCAACTCCACACGGTACATTAGAAAC	TACTTATCAAGCGTTTCCTTGATAGCTTTTTTGACGTAG
CTTTCAACTCCACACGGTACATTAGAAAC	GGGAACGAGGGTGGAGCTTGGTAGCATAGTACAAGAGA
CTTTCAACTCCACACGGTACATTAGAAAC	CCGCCATTACCCATTTTGGGAAGTGATGGCGGAAGCAA
CTTTCAACTCCACACGGTACATTAGAAAC	GAGATAATGCAGATTGTTTTACAGTACAATGAGCAAC
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTGAGGAGCTAATCAGGGAAGAGCTTGGTCCGATGGGGGT
CTTTCAACTCCACACGGTACATTAGAAAC	TATCCCATCTCCCCAGCTATCTTTTCAAGCACAGCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	CATTAGCTTTTTCATGCCTAAGTCATTAAAAGAGGAGC
CTTTCAACTCCACACGGTACATTAGAAAC	GCCAGTATGCATATATAATGTGTAGGAAAATACCTA
CTTTCAACTCCACACGGTACATTAGAAAC	ACGAGTCCACCGCCAGAGTATTAAGTACATTGTTGGGGA
CTTTCAACTCCACACGGTACATTAGAAAC	AAAGATACAAAGCCCCGCCAGTAGCTATGCAAACATA
CTTTCAACTCCACACGGTACATTAGAAAC	AGAAAATTACGGAAATGGAGAATGATCCAAAACTCATGCTTTCAACTCCACACGGTAC
ATTAGAAACCCACACGGTACATTAGAAAC	GTCCGAGATCCTCTTTGAAGAAGTGTTGTATCTCCTGCG
CTTTCAACTCCACACGGTACATTAGAAAC	AAAAAGGAAGAAGGGATAATAGTTGGTAGCGTGGACATAA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGTCTCACCCCACGGAGATGTGATAGGATCAGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TCACCAAACACCTTAATCCCAAAAGCTTCATAGAGTTTC
CTTTCAACTCCACACGGTACATTAGAAAC	ACTTAGGAGTGGCATGCCTGCCTGATAGGTCTTGCCATATT
CTTTCAACTCCACACGGTACATTAGAAAC	GCAACGCCTTCCCGCTTTTTACAAAAGCAAAAAACCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	GCTGAGGAAGCACTCGTGGATGAGGATAACAGCATAG
CTTTCAACTCCACACGGTACATTAGAAAC	ATAGTGAAAAAGAGGCTCCCTTCATTCAATCTCCACCAACG
CTTTCAACTCCACACGGTACATTAGAAAC	TCATAAACCGCCCCAGTTTGCACTGCTATCCTCAG
CTTTCAACTCCACACGGTACATTAGAAAC	GACCCCTCAGTTCTTGCCTCACTTCCTCAATGCTGGA
CTTTCAACTCCACACGGTACATTAGAAAC	CTTGTTATCTCATGAGTTTCCCCTATCTTCACAATG
CTTTCAACTCCACACGGTACATTAGAAAC	ATCCCTATACACCACTAACAGCTTTTGTGGTTTAGTAGAGAA
CTTTCAACTCCACACGGTACATTAGAAAC	GGGTAGTGCGGAAAGGCTTGAGAAGAAGTTTTTAAGA
CTTTCAACTCCACACGGTACATTAGAAAC	AGACAGGAGGTGAGAGAAATGAAGAAGTTCATTTTAA
CTTTCAACTCCACACGGTACATTAGAAAC	CTGAAAGGGAAGATTGACCCCCACTCCTAAGGCACT
CTTTCAACTCCACACGGTACATTAGAAAC	TAATTCCACTATCAGAATGGTTCTTGAAGAAGTTCAA
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAGGAAGAGAAGGAAGTTATACCTTCCATTTTTA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGAGTAGCCCCTTTGCTTGCATACTCTCGTTAGCCTGCC
CTTTCAACTCCACACGGTACATTAGAAAC	AAAACAAGTTCTACGAGCTTTACAGTGATGCTAAGAG
CTTTCAACTCCACACGGTACATTAGAAAC	TTTTTCAACAAACTACTTGTATTTGTCTCAGTATCATG
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAAAGTAGTTCTGCTTTCATTACAAAAAAACTTTTAAA
CTTTCAACTCCACACGGTACATTAGAAAC	AAATCAAGTAGCAATTAAAAAAATCCAAATCCAATAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	TATCGCTGAACACCTCTCCAGTTAGAGTGCATCTGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	TTCAAGTATTTACAGAGAGATGCAGGATATCTCTTAG
CTTTCAACTCCACACGGTACATTAGAAAC	CCTTGGAGGGTCAGAAAGGTTTGATGCATAACAAGTATG
CTTTCAACTCCACACGGTACATTAGAAAC	TCCTGTGAGGGATGTAGAGGTGGAAAGTAAAGACTTTTCAA
CTTTCAACTCCACACGGTACATTAGAAAC	AAGGGATTGAAACTGAAAAATCCGCCACCACAGAACA
CTTTCAACTCCACACGGTACATTAGAAAC	ATGCTTGGAAAGGCTCTGAAAGAAGGAACTCTCACAA
CTTTCAACTCCACACGGTACATTAGAAAC	GAAGATGGGCTAAATGTTTTCGTGGATACTGCAGAAAA
CTTTCAACTCCACACGGTACATTAGAAAC	TCTGTTCCTGTCAGTCCTTCCTCTTTCTCTGATACGTCAG
CTTTCAACTCCACACGGTACATTAGAAAC	TGTTGTAGGGGTGGCGGGTTCTGTCTGTTGTTGCG
CTTTCAACTCCACACGGTACATTAGAAAC	CTGAATTCTGTACCTTTCCAACTTTTTTCTGTTGTTC
CTTTCAACTCCACACGGTACATTAGAAAC	AATCTCAGTGTTTGCTGGTACATCCGCCCCGAACGGAAAACT
CTTTCAACTCCACACGGTACATTAGAAAC	GGGCAAAGGAAGGAAGCGTAAAATAGTTAAAAAACTTCAAA
CTTTCAACTCCACACGGTACATTAGAAAC	GTGGTTGAAGTATCTGCTGGAAGAAGGGTGACGATACTGA
CTTTCAACTCCACACGGTACATTAGAAAC	CAGAGTGATGTCACACAAGATGTGAGACTTGTTGCATC
CTTTCAACTCCACACGGTACATTAGAAAC	TGAAGCTGATGAGGAATGCATCAAAGAAAATTTCAGGA
CTTTCAACTCCACACGGTACATTAGAAAC	ACTCTCTCCACCGCATCAGCACCACCTGTGTCCTCTG
CTTTCAACTCCACACGGTACATTAGAAAC	CACGGAAAAACCGCACCGCACCGAAAAAGGTTAGGAAG
CTTTCAACTCCACACGGTACATTAGAAAC	CATGTATCTTTTCCACCGCACAGTTTCCAGAGACTCA
CTTTCAACTCCACACGGTACATTAGAAAC	TTGCGAATTTGTCCGCTTACGCGGACCGAACCTTTAAG
CTTTCAACTCCACACGGTACATTAGAAAC	AATGATTTTGTTTCGTTGTATACGCGTGTCTTCAATGA
CTTTCAACTCCACACGGTACATTAGAAAC	GGATACAAGGTACAAGATAGTACAGGTTGCAATAGAGCT
CTTTCAACTCCACACGGTACATTAGAAAC	TGTAGTCTGTACTTCTTTAATAACCTGTTCTATTGATGC
CTTTCAACTCCACACGGTACATTAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013894.1\|WP_012992632.1\|1491312_1491885_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_013894.1\|WP_012992635.1\|1493511_1494558_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_013894.1\|WP_012992637.1\|1495898_1496219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215598
NC_013894.1\|WP_012992631.1\|1490234_1490807_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225833
NC_013894.1\|WP_012992634.1\|1492760_1493531_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NC_013894.1\|WP_012992636.1\|1494547_1495654_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_013894.1\|WP_012992625.1\|1483212_1485963_+\|DUF1156-domain-containing-protein	unknown	unknown	gnl\|CDD\|224657
NC_013894.1\|WP_012992626.1\|1486007_1488563_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224400
NC_013894.1\|WP_012992633.1\|1491897_1492764_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274043
NC_013894.1\|WP_012992628.1\|1489294_1489459_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236179

Protein	Function_ID	Function_description	E-value
NC_013894.1\|WP_012992632.1\|1491312_1491885_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.21923e-05
NC_013894.1\|WP_012992635.1\|1493511_1494558_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.33835e-56
NC_013894.1\|WP_012992637.1\|1495898_1496219_+\|hypothetical-protein	gnl\|CDD\|215598	PLN03138, PLN03138, Protein TOC75; Provisional.	3.25356e-05
NC_013894.1\|WP_012992631.1\|1490234_1490807_+\|hypothetical-protein	gnl\|CDD\|225833	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown].	0.00958058
NC_013894.1\|WP_012992634.1\|1492760_1493531_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	6.70768e-110
NC_013894.1\|WP_012992636.1\|1494547_1495654_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_013894.1\|WP_012992625.1\|1483212_1485963_+\|DUF1156-domain-containing-protein	gnl\|CDD\|224657	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair].	1.85133e-144
NC_013894.1\|WP_012992626.1\|1486007_1488563_+\|ATP-binding-protein	gnl\|CDD\|224400	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only].	5.47803e-43
NC_013894.1\|WP_012992633.1\|1491897_1492764_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.7109e-25
NC_013894.1\|WP_012992628.1\|1489294_1489459_+\|hypothetical-protein	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0.0096227

>NC_013894.1|WP_012992637.1|1495898_1496219_+|hypothetical-protein
MKRYVGYLVFGLIVMGIVLSGCGGGGGSGYYGGGGGGGSGGGGGGGGGVVTAPSGSLDTTFGTNGKVRTDIGGREDGARALAIQSDGKIVVAGFSSGDFAVVRYCY
>NC_013894.1|WP_012992636.1|1494547_1495654_-|redox-regulated-ATPase-YchF
MSLSCGIVGLPNVGKSTLFNALTQTAKAQAANYPFCTIEPNVGLVEVPDPRLYEIARRENSRKITPTFVEFVDIAGLVRNASKGEGLGNQFLAHIREVDAIVQVLRCFEDPSVVHVEGDVNPVRDAQIIDIELIAKDLQTVEKRLEKVQKMARLGDKQALQELGMLEDIKKILENLEPLRRYRSHLSEETWHYAQKTLFLLTTKPVLYVANVGESDLPEGNRWVKELEEYAKGEGAPVVMVCAKLEAELVELAPEEKEELLRVYGFDEPGLNRLVREAYRTLGLITFFTAGEKETRAWTVLKGTKAPQAAGKIHSDMERGFIAAEVISYEDYIKVGSLSKAKEKGLVRLEGKDYVVQDGDIMYFRFNV
>NC_013894.1|WP_012992635.1|1493511_1494558_+|glycosyltransferase-family-4-protein
MRILWVNGNPNPHFGGTELHTVSMVKELKNMGVDLVLACAPGSFVDKHTHHVKKFYVSFPRSLHIPGMWSLYKAMREVDPHIVIANNGKEYPDVVYLSKLFGKKVVLFRHMDRMKQITVRKLVFPLVDLFLAVSGHVKENLLKEGVSPDKIQVIYNLIDEGRFKPSQKPEHPINILFVGKVDEGKGVWDLLRAFERLTKTRDDVRLYIVGDGRELPRVRAYVEDKAIKDRVHMVGYTDKVEEYYSLSHICVVPSREREAFPRVAIEALASGCALVVSHIGGTKEAVREKENGFVFRAGDVEDLYQKLLLSIENWRVFTQNSLELYRKNFSKERTLSKFLSVLEDLLKR
>NC_013894.1|WP_012992634.1|1492760_1493531_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKFFVLTIFPQMIEDYCRYGIVRKAIKVGALEVFPINLRDFAPKGQVDDTPYGGFPGMVIKPEPIFEAHHYVTQNWGKPYVLLPQPWGKKISQKDLDRWANMENLMVICGRYEGVDERVTALVDEEISLGDFVLAGGELVAMVILEGVARLLPGVLNDPESLRRDSFRRWLGAPVYTRPPEYMGMKVPSVLISGHHQLIELWALWHSIERTLRYRPDLVPSDLSPLEKDMLESIRKGMSFEEWLRTKNKSHENPVG
>NC_013894.1|WP_012992633.1|1491897_1492764_+|tyrosine-type-recombinase/integrase
MGILELWRRSLERSRSERTVITYSKCLELFARNTGLTEDELLNTEPVHLYQHIDSSSLSPASVLTHLSALKHFFKFAVRRGYMSREAYTKLEAAIEELRDEIGRRNVRRAPKALTREELSRIMESTKNTVYERVYTLFLYSGIRLSEYKHLKKDNFFMDKSGIYWLRLPAYATKGNKERMAPIMGPTKEETYQVTEKLARWLENYEENLVVNAGSLQVYTYRLSHRLNIPFSLHSFRHTYITNLINSGFPAEVVKEFAGHSHVKTTIDIYYRFSPERARKLVEEFLRV
>NC_013894.1|WP_012992632.1|1491312_1491885_+|hypothetical-protein
MDYVKMKASEYATLTGLSLNTVKNRIRAGVLKGEKAEDGLWYVYVPGDEYQHLLKREEDVKEVQERIKESMEKLRSHLEGNLIATYMELLLQKEKQKDELLHELASLYALLAIREKEIEILNESIQRMKKELSELEDLRKSLREKEKELAKLERDLKSAELECQKKLLEKEKELMEKETQLKLLRGEIDR
>NC_013894.1|WP_012992631.1|1490234_1490807_+|hypothetical-protein
MKQLNIDVKKKSIFRSITAVVVIGLSMFIAGITPNTATILGFVVAFVWAIIYADTDPSPGLYKNGKYLGKIYKAFIKVGDNVALGKKRDTETIGYLKILKDGKEVAKLYLTAEGFMELKPDKIWEVFPEIKGKVERFERLFKVGDYTLEYRFFQGIANASYVYEDDDDARKKRLHPIYDIYASNIHHRDD
>NC_013894.1|WP_012992628.1|1489294_1489459_+|hypothetical-protein
MECFDGFDEKEWLKKQLEEIFKPPTDDWDKLRAWVYRFGDEWDIFLIELTIPEF
>NC_013894.1|WP_012992626.1|1486007_1488563_+|ATP-binding-protein
MKPFVQIAQPHRDIVEGKLTMDVFAADLWEVVKGTAKQDYQDPHLFFSKTYMTNGLKNILDIAKERLEGKRGDAIIQLQTPFGGGKTHTLIALYHKAREWGAKVAVFDGTAPDPRDVRPWEEIERQLTGEVKLTKGDISPGKEKLAKLLEENAPVLILMDEILAYATKSAGVKIGDSDLSAQTLAFIQELTGAVSSVGNALLVLTLPSSILELYDENAQRILETLTKIIGRTAKIYAPVGDEEIEHVVRARLFEKVDESEAKKVVNEFVEYAKREGLLSEDEAENYRQKFLRSYPFKPEVIDVLYKRWGSFPTFQRTRGVLRLLSLVIYDLMKENKPFIRLGDFNLNNKEIRRELIEHIGSEWDSIIAQDITSDDAGAKKVDAAIGSAYTSYKLGTKVSTTIFMMSFSGRGERGTSIREIKHSVALPELPSSVIDTTINHLKEKLYYLSDDGLFFTNQANLNKIIVDREGVISDDEIYEEEKNIVNKYLPKSSPVFKWYINPQFSRDVPDSPELKLIILDRSKPEDEFLEKCGELPRVYKNTLIFLCIDENQKSSFHSYLRKMLALRSIENDKSLNLSEAQRKEVKSKLKDYEQREYEELRKLYRRVFVPAKDGFKEVKDNGGMGLPTVGKNSLDGEVYSYLKGKGEVLEQIIPELIAERYLKEKDYVEIKNLYESFLRTPGEIRPASKDVFLRSIEEGVKKGLFGFGYIVNGQIECKYIKETPSVNLTDEEVIIKPDLCEKTPKEITQNENKAVIKAPSSSLYEKQTTLEREEPADKNTFSEITLELVVPVGQISTIAKIINYLKDKFQKNNVEVTLHASDGKITKEDYEDKVIEALKQAGIKIIRENLS
>NC_013894.1|WP_012992625.1|1483212_1485963_+|DUF1156-domain-containing-protein
MTHKKSFIESSFPVKEVSEIASKEKNIRHGHISTLHIWWARRPLAASRATIYASLIPEDEVKWNSIRKFIIELSKWENSLSLKVIQKAREDILKANGGKVLRMLDPFSGGGSIPLEALRLGLEVHAMDYNPVATIILKCTLEYPQRYAKPGETKVEVNNFGKSEKVKRKTDNLLLEDVKRWGNWVLEEAKKEIGRFYPEDPDGSIPVGYIWARTIPCQNPSCGAEIPLMRQFWLAKKENKKVSLYPYVEGKEVKFKIVGTGYEPMPNNFNPEDGTVRRAVAVCPVCRSAVDDKTVRKLFQNGKAGQRMVAVVLQHPKKSGKIYRLATEKDIEVFREAEKYMEEKRQKLMEEWGIDPVPDEETPEGKGKGAERAFSVRNFGLNTYGDLFNARQKLALITFTEKVRLAYQKMLEEGYDKEYAKAVVSYLALGVNRMADYMSNLCVHDNTQERTVHVFGRQALPMVWDYSELNPLSEAVGSWESMLVRRILLTLSHLSQIPPVYIQENGTSKQIIPAVRQGSATELPYPDNYFDAVFTDPPYYDNVPYSYLSDFFYVWLKRSIGDLYPELFITPLTPKSKEIVAYSHLPGGYEAGKQFFENMLKKAFKEISRVLKPEGIAVIVYTHKSTSGWETLINSLLDSDLVITASWPIDTEMKSRLRAKESAALASSIYLVCRKMKREETGWLKEVEEELEKHLYKKLEDLWNEGVSGADFFVAGIGASIEIFGKYKRIMDYSGNEVDVSKLLEIVRELVTDYAVKQVLHNGITGYLSPLTKFYLLYRWAYGESKVHFDEARKLAHSVGVNLEKEWNRGFIRKEGENIAVLGPQDRSIKTLEKSEELIDVLHFVLLLWKAGAKEEMKKVLKETGYGEKEYFYRVAQAISETLPNDSKEKKLLDGFLSDRDRLMEEIKKQQRGLYG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013894_2	2.22\|178867\|38\|NC_013894\|CRISPRCasFinder,CRT	178867-178904	38	MN693308	Marine virus AFVG_25M475, complete genome	13636-13673	10	0.737
NC_013894_2	2.22\|178867\|38\|NC_013894\|CRISPRCasFinder,CRT	178867-178904	38	MN693437	Marine virus AFVG_25M476, complete genome	13628-13665	10	0.737
NC_013894_2	2.62\|178868\|38\|NC_013894\|PILER-CR	178868-178905	38	MN693308	Marine virus AFVG_25M475, complete genome	13636-13673	10	0.737
NC_013894_2	2.62\|178868\|38\|NC_013894\|PILER-CR	178868-178905	38	MN693437	Marine virus AFVG_25M476, complete genome	13628-13665	10	0.737

1. spacer 2.22|178867|38|NC_013894|CRISPRCasFinder,CRT matches to MN693308 (Marine virus AFVG_25M475, complete genome) position: , mismatch: 10, identity: 0.737

agaaatacatgtactgctgttatgacagtgtgtttgca-----	CRISPR spacer
tcaaatacatttactgctgttatggcag-----ttggagaaag	Protospacer
  ******** *************.***     *** *

2. spacer 2.22|178867|38|NC_013894|CRISPRCasFinder,CRT matches to MN693437 (Marine virus AFVG_25M476, complete genome) position: , mismatch: 10, identity: 0.737

agaaatacatgtactgctgttatgacagtgtgtttgca-----	CRISPR spacer
tcaaatacatttactgctgttatggcag-----ttggagaaag	Protospacer
  ******** *************.***     *** *

3. spacer 2.62|178868|38|NC_013894|PILER-CR matches to MN693308 (Marine virus AFVG_25M475, complete genome) position: , mismatch: 10, identity: 0.737

agaaatacatgtactgctgttatgacagtgtgtttgca-----	CRISPR spacer
tcaaatacatttactgctgttatggcag-----ttggagaaag	Protospacer
  ******** *************.***     *** *

4. spacer 2.62|178868|38|NC_013894|PILER-CR matches to MN693437 (Marine virus AFVG_25M476, complete genome) position: , mismatch: 10, identity: 0.737

agaaatacatgtactgctgttatgacagtgtgtttgca-----	CRISPR spacer
tcaaatacatttactgctgttatggcag-----ttggagaaag	Protospacer
  ******** *************.***     *** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

337721 : 344543

Lake_Baikal_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012991378.1\|337721_338066_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	3.6e-16	38.7
WP_012991379.1\|338078_338564_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_041434159.1\|338472_339501_-	PhoH family protein	A0A223LII3	Erwinia_phage	2.2e-45	40.5
WP_052293037.1\|339504_340377_-	DUF89 family protein	NA	NA	NA	NA
WP_012991382.1\|340360_341206_-	deoxyribonuclease IV	M1PMK4	Moumouvirus	3.6e-25	27.6
WP_012991383.1\|341205_342186_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	G3MA01	Bacillus_virus	1.2e-27	30.2
WP_012991384.1\|342198_343086_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.9e-35	36.7
WP_012991385.1\|343070_344543_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	9.2e-61	30.8

DBSCAN-SWA_2

354738 : 364436

Catovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012991397.1\|354738_355671_+	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	A0A2H4N7X4	Lake_Baikal_phage	1.4e-17	28.2
WP_012991398.1\|355667_355997_+	YraN family protein	NA	NA	NA	NA
WP_012991399.1\|355988_356228_-	KH domain-containing protein	NA	NA	NA	NA
WP_012991400.1\|356241_356481_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_012991401.1\|356506_357586_-	DnaJ domain-containing protein	A0A1V0SBY2	Catovirus	9.9e-20	27.4
WP_012991402.1\|357708_358245_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	5.9e-50	56.8
WP_012991403.1\|358241_359207_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	8.8e-44	34.0
WP_012991404.1\|359203_360331_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_012991405.1\|360338_360941_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_012991406.1\|361013_361388_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_052293051.1\|361393_361996_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	1.3e-21	38.2
WP_012991408.1\|361949_364436_-	AMP-binding protein	A0A1V0SBX8	Catovirus	4.1e-45	26.8

DBSCAN-SWA_3

1350269 : 1359022

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012992480.1\|1350269_1351907_-	chaperonin GroEL	A0A219YK78	uncultured_virus	3.9e-169	56.9
WP_012992481.1\|1351926_1352223_-	co-chaperone GroES	A0A221S322	uncultured_virus	1.2e-15	46.8
WP_012992482.1\|1352413_1353385_+	thioredoxin-disulfide reductase	A0A2K9L162	Tupanvirus	6.1e-45	35.8
WP_012992483.1\|1353381_1354662_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	7.6e-43	37.9
WP_012992484.1\|1354667_1355543_+	ATP phosphoribosyltransferase regulatory subunit	A0A1V0SFH3	Hokovirus	1.7e-09	27.2
WP_012992485.1\|1355551_1356835_+	histidinol dehydrogenase	NA	NA	NA	NA
WP_012992486.1\|1356831_1357386_+	hypothetical protein	NA	NA	NA	NA
WP_012992487.1\|1357385_1358189_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_052293059.1\|1358185_1359022_+	signal peptide peptidase SppA	Q7Y411	Yersinia_phage	7.7e-20	33.2

DBSCAN-SWA_4

1363691 : 1374219

Escherichia_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012992495.1\|1363691_1363901_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.6e-14	62.3
WP_012992496.1\|1364034_1365183_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_012992497.1\|1365171_1366032_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.6e-31	33.5
WP_012992498.1\|1366028_1366985_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.5e-75	42.0
WP_012992499.1\|1366986_1367559_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.4e-44	50.6
WP_012992500.1\|1367568_1368480_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.9e-90	53.1
WP_012992501.1\|1368480_1368897_-	hypothetical protein	NA	NA	NA	NA
WP_012992502.1\|1368928_1369402_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.8e-29	44.7
WP_012992503.1\|1369398_1370283_+	aspartate carbamoyltransferase catalytic subunit	M1HQL8	Paramecium_bursaria_Chlorella_virus	8.4e-25	30.9
WP_012992504.1\|1370275_1371439_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	9.3e-40	31.4
WP_012992505.1\|1371428_1373021_-	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	1.9e-43	33.2
WP_012992506.1\|1373109_1374219_+	inositol-3-phosphate synthase	A0A0H4IPK5	Stenotrophomonas_phage	1.9e-82	47.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013894

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection