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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_013921 Thermoanaerobacter italicus Ab9, complete sequence 5 crisprs RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1 2 10 7 0

Results visualization

1. NC_013921
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013921_1 759928-763624 TypeIII NA
55 spacers
cmr3gr5,cas10,cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013921_2 1389800-1391699 TypeIII NA
28 spacers
cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013921_3 1417978-1418079 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013921_4 2330986-2331286 TypeI-B NA
4 spacers
cas4,cas1,cas2,cas3,cas5,cas7,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013921_5 2332916-2334204 TypeI-B NA
19 spacers
cas4,cas1,cas2,cas3,cas5,cas7,cas8b1

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_013921_2 2.16|1390835|36|NC_013921|CRISPRCasFinder 1390835-1390870 36 NC_013921.1 440685-440720 0 1.0
NC_013921_2 2.16|1390835|36|NC_013921|CRISPRCasFinder 1390835-1390870 36 NC_013921.1 653860-653895 0 1.0
NC_013921_2 2.16|1390835|36|NC_013921|CRISPRCasFinder 1390835-1390870 36 NC_013921.1 1170186-1170221 0 1.0
NC_013921_2 2.23|1391300|39|NC_013921|CRISPRCasFinder 1391300-1391338 39 NC_013921.1 2141970-2142008 0 1.0

1. spacer 2.16|1390835|36|NC_013921|CRISPRCasFinder matches to position: 440685-440720, mismatch: 0, identity: 1.0

gatttctcatgatagcttcaaaatttgtccaaaata	CRISPR spacer
gatttctcatgatagcttcaaaatttgtccaaaata	Protospacer
************************************

2. spacer 2.16|1390835|36|NC_013921|CRISPRCasFinder matches to position: 653860-653895, mismatch: 0, identity: 1.0

gatttctcatgatagcttcaaaatttgtccaaaata	CRISPR spacer
gatttctcatgatagcttcaaaatttgtccaaaata	Protospacer
************************************

3. spacer 2.16|1390835|36|NC_013921|CRISPRCasFinder matches to position: 1170186-1170221, mismatch: 0, identity: 1.0

gatttctcatgatagcttcaaaatttgtccaaaata	CRISPR spacer
gatttctcatgatagcttcaaaatttgtccaaaata	Protospacer
************************************

4. spacer 2.23|1391300|39|NC_013921|CRISPRCasFinder matches to position: 2141970-2142008, mismatch: 0, identity: 1.0

tgatattgatggcacaaacttttacataaagctcaaaat	CRISPR spacer
tgatattgatggcacaaacttttacataaagctcaaaat	Protospacer
***************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_013921_5 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR 2334140-2334174 35 NC_004979 Thermoanaerobacterium thermosaccharolyticum plasmid pNB2, complete sequence 238-272 3 0.914
NC_013921_1 1.16|760961|35|NC_013921|PILER-CR,CRISPRCasFinder,CRT 760961-760995 35 NC_004979 Thermoanaerobacterium thermosaccharolyticum plasmid pNB2, complete sequence 991-1025 5 0.857
NC_013921_5 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR 2334140-2334174 35 NC_007110 Rickettsia felis URRWXCal2 plasmid pRF, complete sequence 56664-56698 7 0.8
NC_013921_5 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR 2334140-2334174 35 NC_007111 Rickettsia felis URRWXCal2 plasmid pRFdelta, complete sequence 33098-33132 7 0.8
NC_013921_5 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR 2334140-2334174 35 NC_019229 Rickettsia felis plasmid pRF, complete sequence 56688-56722 7 0.8
NC_013921_1 1.17|761026|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT 761026-761062 37 MN552143 Lactococcus phage P1046, complete genome 2835-2871 8 0.784
NC_013921_1 1.17|761026|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT 761026-761062 37 NC_010576 Lactococcus phage 1706, complete genome 4029-4065 8 0.784
NC_013921_1 1.22|761358|35|NC_013921|PILER-CR,CRISPRCasFinder,CRT 761358-761392 35 NC_002132 Flavobacterium sp. KP1 plasmid pFL1 DNA, complete sequence 181-215 8 0.771
NC_013921_1 1.43|762755|38|NC_013921|PILER-CR,CRISPRCasFinder,CRT 762755-762792 38 NZ_CP023400 Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence 8076-8113 8 0.789
NC_013921_1 1.17|761026|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT 761026-761062 37 MK779875 Lactococcus phage CHPC971, complete genome 3800-3836 9 0.757
NC_013921_2 2.21|1391167|36|NC_013921|CRISPRCasFinder 1391167-1391202 36 NZ_CP048879 Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence 76878-76913 10 0.722
NC_013921_2 2.28|1391636|34|NC_013921|CRISPRCasFinder 1391636-1391669 34 NC_009036 Shewanella baltica OS155 plasmid pSbal02, complete sequence 30456-30489 10 0.706
NC_013921_2 2.28|1391636|34|NC_013921|CRISPRCasFinder 1391636-1391669 34 NC_017578 Shewanella baltica OS117 plasmid pSBAL11703, complete sequence 66813-66846 10 0.706
NC_013921_2 2.49|1391167|37|NC_013921|PILER-CR,CRT 1391167-1391203 37 NZ_CP048879 Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence 76878-76914 10 0.73
NC_013921_1 1.40|762555|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT 762555-762591 37 LN846931 Carnobacterium maltaromaticum strain LMA28 megaplasmid, complete genome 93117-93153 11 0.703
NC_013921_1 1.46|762956|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT 762956-762992 37 NC_011961 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence 207974-208010 11 0.703

1. spacer 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR matches to NC_004979 (Thermoanaerobacterium thermosaccharolyticum plasmid pNB2, complete sequence) position: , mismatch: 3, identity: 0.914

tctttcctattctgttttaatactatagaactaat	CRISPR spacer
ttcttcttattctgttttaatactatagaactaat	Protospacer
*..***.****************************

2. spacer 1.16|760961|35|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to NC_004979 (Thermoanaerobacterium thermosaccharolyticum plasmid pNB2, complete sequence) position: , mismatch: 5, identity: 0.857

aaaataggcgtttggttagttctttgggtattctt	CRISPR spacer
agaataggcggttggttagttctttaggtattttg	Protospacer
*.******** **************.******.* 

3. spacer 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR matches to NC_007110 (Rickettsia felis URRWXCal2 plasmid pRF, complete sequence) position: , mismatch: 7, identity: 0.8

tctttcctattctgttttaatacta-tagaactaat	CRISPR spacer
actttccttttctattttaatactattaagattaa-	Protospacer
 ******* ****.*********** **..*.*** 

4. spacer 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR matches to NC_007111 (Rickettsia felis URRWXCal2 plasmid pRFdelta, complete sequence) position: , mismatch: 7, identity: 0.8

tctttcctattctgttttaatacta-tagaactaat	CRISPR spacer
actttccttttctattttaatactattaagattaa-	Protospacer
 ******* ****.*********** **..*.*** 

5. spacer 5.19|2334140|35|NC_013921|CRISPRCasFinder,CRT,PILER-CR matches to NC_019229 (Rickettsia felis plasmid pRF, complete sequence) position: , mismatch: 7, identity: 0.8

tctttcctattctgttttaatacta-tagaactaat	CRISPR spacer
actttccttttctattttaatactattaagattaa-	Protospacer
 ******* ****.*********** **..*.*** 

6. spacer 1.17|761026|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to MN552143 (Lactococcus phage P1046, complete genome) position: , mismatch: 8, identity: 0.784

actctagact----tagaagaaggatcatagtaaacatttt	CRISPR spacer
----tagccttctatagcagaaggatcatagtaaaaatttg	Protospacer
    *** **    *** ***************** **** 

7. spacer 1.17|761026|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to NC_010576 (Lactococcus phage 1706, complete genome) position: , mismatch: 8, identity: 0.784

actctagact----tagaagaaggatcatagtaaacatttt	CRISPR spacer
----tagccttctatagcagaaggatcatagtaaaaatttg	Protospacer
    *** **    *** ***************** **** 

8. spacer 1.22|761358|35|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to NC_002132 (Flavobacterium sp. KP1 plasmid pFL1 DNA, complete sequence) position: , mismatch: 8, identity: 0.771

atttcacaatttgataatttacttacttctgtgaa	CRISPR spacer
ttatcataatttgataatttactttcttttttata	Protospacer
 * ***.***************** ***.* *. *

9. spacer 1.43|762755|38|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 8, identity: 0.789

ttgactactgcttctttttgttcagctatctctttttc	CRISPR spacer
ctagccccagcttctgtttgttcagctatttctttttc	Protospacer
.*..*. * ****** *************.********

10. spacer 1.17|761026|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to MK779875 (Lactococcus phage CHPC971, complete genome) position: , mismatch: 9, identity: 0.757

actctagact----tagaagaaggatcatagtaaacatttt	CRISPR spacer
----taaccttctatagcagaaggatcatagtaaaaatttg	Protospacer
    **. **    *** ***************** **** 

11. spacer 2.21|1391167|36|NC_013921|CRISPRCasFinder matches to NZ_CP048879 (Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence) position: , mismatch: 10, identity: 0.722

cagcgcctaaagcattttttgactacacgggtgctc	CRISPR spacer
ttgtacataaagctttttttgactacatgggtgact	Protospacer
. *..* ****** *************.***** ..

12. spacer 2.28|1391636|34|NC_013921|CRISPRCasFinder matches to NC_009036 (Shewanella baltica OS155 plasmid pSbal02, complete sequence) position: , mismatch: 10, identity: 0.706

aagcaggataatcagcaagattaacagttgcact	CRISPR spacer
ctttaccataatcagccagattaacatttgcggt	Protospacer
   .*  ********* ********* ****. *

13. spacer 2.28|1391636|34|NC_013921|CRISPRCasFinder matches to NC_017578 (Shewanella baltica OS117 plasmid pSBAL11703, complete sequence) position: , mismatch: 10, identity: 0.706

aagcaggataatcagcaagattaacagttgcact	CRISPR spacer
ctttaccataatcagccagattaacatttgcggt	Protospacer
   .*  ********* ********* ****. *

14. spacer 2.49|1391167|37|NC_013921|PILER-CR,CRT matches to NZ_CP048879 (Oceanospirillales bacterium S2-4-1H plasmid pA, complete sequence) position: , mismatch: 10, identity: 0.73

cagcgcctaaagcattttttgactacacgggtgctcg	CRISPR spacer
ttgtacataaagctttttttgactacatgggtgactg	Protospacer
. *..* ****** *************.***** ..*

15. spacer 1.40|762555|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to LN846931 (Carnobacterium maltaromaticum strain LMA28 megaplasmid, complete genome) position: , mismatch: 11, identity: 0.703

gggtttaataatgcttcctcaattttttctggggtga	CRISPR spacer
gttaaaaataatgctttctcatttttttctggagcat	Protospacer
*     **********.**** **********.*.. 

16. spacer 1.46|762956|37|NC_013921|PILER-CR,CRISPRCasFinder,CRT matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.703

cgctcggcgagctcctggagcatctcccactcggtag	CRISPR spacer
tgctcggcgagctcctggaggacctccttgaggccac	Protospacer
.******************* *.****.    * .* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22591 : 31497 9 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_2 523288 : 534832 11 Synechococcus_phage(25.0%) NA NA
DBSCAN-SWA_3 614168 : 622941 9 Moraxella_phage(16.67%) NA NA
DBSCAN-SWA_4 1356990 : 1423835 63 Geobacillus_phage(20.0%) tail,portal,tRNA,integrase,head,transposase attL 1396371:1396430|attR 1402205:1404102
DBSCAN-SWA_5 1427113 : 1433864 13 Bacillus_virus(22.22%) NA NA
DBSCAN-SWA_6 1479922 : 1488186 10 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_7 1880831 : 1943350 53 Streptococcus_phage(16.67%) transposase,integrase attL 1912491:1912507|attR 1939037:1939053
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage