CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013959	Sideroxydans lithotrophicus ES-1, complete sequence	1 crisprs	RT,cas3,DEDDh,DinG,cas6,csa3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013959_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013959_1

2424284-2424368

Orphan

Consensus_repeat	Method
GCTAACCATCGACTTGGCTGGTGTATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013959_1

>merge|NC_013959|1|2424284-2424368|CRISPRCasFinder
GCTAACCATCGACTTGGCTGGTGTATTTTGACAGCCTAGTCGAATGGCTATGCAAAGCTAACCATCGACTTGGCTGGCGTATTTT

>NC_013959|1|1|2424284-2424368|CRISPRCasFinder
GCTAACCATCGACTTGGCTGGTGTATTTT	GACAGCCTAGTCGAATGGCTATGCAAA
GCTAACCATCGACTTGGCTGGCGTATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013959.1\|WP_013030531.1\|2430225_2430627_+\|DUF3106-domain-containing-protein	unknown	unknown	gnl\|CDD\|378633
NC_013959.1\|WP_013030520.1\|2421988_2422696_+\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NC_013959.1\|WP_013030522.1\|2423335_2423758_+\|DUF1841-family-protein	unknown	unknown	gnl\|CDD\|370177
NC_013959.1\|WP_013030518.1\|2420319_2421348_+\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NC_013959.1\|WP_013030528.1\|2427446_2429153_-\|acetolactate-synthase-3-catalytic-subunit	unknown	unknown	gnl\|CDD\|180780
NC_013959.1\|WP_013030527.1\|2426953_2427445_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NC_013959.1\|WP_013030519.1\|2421344_2421992_+\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NC_013959.1\|WP_013030533.1\|2431768_2432902_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NC_013959.1\|WP_013030513.1\|2414814_2415501_+\|response-regulator	unknown	unknown	gnl\|CDD\|182522
NC_013959.1\|WP_013030529.1\|2429275_2429875_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236367
NC_013959.1\|WP_013030526.1\|2425888_2426905_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NC_013959.1\|WP_013030514.1\|2415514_2417383_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NC_013959.1\|WP_013030530.1\|2429871_2430222_+\|DUF3619-family-protein	unknown	unknown	gnl\|CDD\|378835
NC_013959.1\|WP_013030521.1\|2422703_2423336_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NC_013959.1\|WP_013030517.1\|2418606_2420310_+\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|235334
NC_013959.1\|WP_013030525.1\|2425160_2425799_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|235400
NC_013959.1\|WP_013030532.1\|2430695_2431772_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NC_013959.1\|WP_150103092.1\|2424396_2425131_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NC_013959.1\|WP_013030515.1\|2417483_2418059_+\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NC_013959.1\|WP_013030516.1\|2418055_2418610_+\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347

Protein	Function_ID	Function_description	E-value
NC_013959.1\|WP_013030531.1\|2430225_2430627_+\|DUF3106-domain-containing-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	2.45075e-24
NC_013959.1\|WP_013030520.1\|2421988_2422696_+\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	3.746e-115
NC_013959.1\|WP_013030522.1\|2423335_2423758_+\|DUF1841-family-protein	gnl\|CDD\|370177	pfam08897, DUF1841, Domain of unknown function (DUF1841). This family of proteins are functionally uncharacterized.	1.63894e-74
NC_013959.1\|WP_013030518.1\|2420319_2421348_+\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	7.14959e-158
NC_013959.1\|WP_013030528.1\|2427446_2429153_-\|acetolactate-synthase-3-catalytic-subunit	gnl\|CDD\|180780	PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated.	0
NC_013959.1\|WP_013030527.1\|2426953_2427445_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	9.20892e-96
NC_013959.1\|WP_013030519.1\|2421344_2421992_+\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.10139e-72
NC_013959.1\|WP_013030533.1\|2431768_2432902_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	5.66321e-122
NC_013959.1\|WP_013030513.1\|2414814_2415501_+\|response-regulator	gnl\|CDD\|182522	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional.	6.06267e-98
NC_013959.1\|WP_013030529.1\|2429275_2429875_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	1.94194e-88
NC_013959.1\|WP_013030526.1\|2425888_2426905_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NC_013959.1\|WP_013030514.1\|2415514_2417383_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NC_013959.1\|WP_013030530.1\|2429871_2430222_+\|DUF3619-family-protein	gnl\|CDD\|378835	pfam12279, DUF3619, Protein of unknown function (DUF3619). This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.	6.23613e-13
NC_013959.1\|WP_013030521.1\|2422703_2423336_+\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	4.52076e-117
NC_013959.1\|WP_013030517.1\|2418606_2420310_+\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
NC_013959.1\|WP_013030525.1\|2425160_2425799_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	7.80459e-117
NC_013959.1\|WP_013030532.1\|2430695_2431772_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	4.69226e-126
NC_013959.1\|WP_150103092.1\|2424396_2425131_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	4.87196e-64
NC_013959.1\|WP_013030515.1\|2417483_2418059_+\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	1.6519e-100
NC_013959.1\|WP_013030516.1\|2418055_2418610_+\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	2.21251e-106

>NC_013959.1|WP_013030522.1|2423335_2423758_+|DUF1841-family-protein
MFNPSRDEARLFLFESWRKRRTGELLTPLEDLTAQLIDKHPEYHTLFDDPERNQDKDYAPDGNVVNPFLHLMMHLTIEEQISIGQPQGIREQFVRLTRKYESEHEAQHAIMDCLGEMIWQAQRNKTAPDAAVYISCLEKQ
>NC_013959.1|WP_013030521.1|2422703_2423336_+|endonuclease-III
MNPAKRREIFLRLQAANPHPTTELEHASPFELLVAVILSAQATDKSVNIATRELFPVANTPQKFLDLGEVELREYVQRIGLYQTKSKHIIQMCRILLEQHDGQVPQTRAALEALPGVGRKTANVILNTAFGQPTIAVDTHIFRVSNRTGLAPGKDVTEVEKKLLKFVPDEFKLDAHHWLILHGRYVCQARKPKCGACIIESLCEYKEKVF
>NC_013959.1|WP_013030520.1|2421988_2422696_+|electron-transport-complex-subunit-E
MNLQEYKDIVHNGLWKQNPGVVQLLGLCPLLAVSSTVVNGVSLGLATSLVMALSGASIAPIRSYVPNEIRIPVFILIIAVLVTVVQYLMNAYMYGLYVVLGIFIPLIVTNCIVLARVEAFASKNNALSSALDGFAMGLGLTAVLGVLGAMRELLGKGTLFSGIDLALGDVAKDWVLHIIPNYKGFLIAILPPGAFIGLGLLIAGRNWLNLRAAQKRQGPTAVPAPVDGGCSPAMH
>NC_013959.1|WP_013030519.1|2421344_2421992_+|electron-transport-complex-subunit-RsxG
MKRIARSTLQTAINLVFFAVIGTAILASVFFMTHDKIVKSEEAEKLKLIMQIVPPALFDNDIIQDTLSIPASDLLGTDEVTTAYRARLKGEPSAVVLSAIAPDGYGGKISLILAVKASGELAGVRVVAHKETPGLGDYIELPKSPWIKGFDGKSREVYKDADWKVKKDGGKFDYMAGATITPRAVVKAVHKALVYFGENRDQLFAPDEARKEKSK
>NC_013959.1|WP_013030518.1|2420319_2421348_+|electron-transport-complex-subunit-RsxD
MWSSPFITQPSSVSQIMLRVLLALIPGIALYVWYFGPAILVSIVLASATALATEAAMLKLRQRPLKPFLTDNSALLTAWLLALSIPPLAPWWLVVVGTAFAIAVSKHLYGGLGNNPFNPAMIGYAVLIISFPAHMTHWLTPHALAGTELTFGEQLDYIFNSVLPKGLSLDAVTMATPLDTLKTQLHLGLSVDNIRDMPIYGRLAGKGSEMVSIGFAIGGIYLLLTRIISWHLPVAFLATLFATAGIFHLLDPAHYVTPLFHWFSGAAMLGAFFILTDPVTSPTTTKGKLYFAFGAGLLTYLIRAFGGFPDGIAFATLLMNICVPLIDAWTQPKVFGKKGGGK
>NC_013959.1|WP_013030517.1|2418606_2420310_+|electron-transport-complex-subunit-RsxC
MRPLFKFHGGIHPPTHKAESTGSPIAQAALPSKLVISLHQHVGNRAVPVVQVGERVLKGQIIGRPEGRLSSAVHASTSGTVSAIDMQLVAHQSGLPDLCVTLVPDGKEEWIPHSGVDYKQVAHTDLRHMLRQAGVVGLGGAVFPSDMKSYSHKHKIRTLVLNGAECEPYITCDDMLMRERAGDILRGAEVLRELLYAEEVLIGIEDNKPEAIAAMQQAVLGDKHAHMEVIAVPTLYPGGGAKQLIRVLTGIEVAAGVRSTEMGVQCFNVATAYCVWRAITYGEPLLSRIVTVTGNVEHAQNFEVLLGTPVDELVAQAGSKPDTERHIMGGPMMGVDLPSGSVGVTKATNCIIEASSRLFPPPPPALPCIRCTRCADVCPAELQPQDLYWFAKAKDFGKAQEYHLFDCIECGACAYVCPSQIPLVQYYRFAKSEIWQREREAQAAELARERHEFRLTRIEREKQEKAERLAQKEKAALAAKTAAPAPTPEPAAVAKAATDPDDTLQMRIDAAVARAKEQAAVAQPKNTDTLTPEQQAEIAAIEARRANIREMAAHAGADDEPPKSNQG
>NC_013959.1|WP_013030516.1|2418055_2418610_+|electron-transport-complex-subunit-RsxB
MISALWVMVGISLLLGAVLGYSAIKFKVEGNPLVEKIDAVLPQTQCGQCGYPGCKPYAEAIAKGEAGINKCPPGGEEGIRKLADLLGVEYVPFGEGVAPKGKAVAFIDEQTCIGCTLCLQACPVDAIVGAAKQMHTIIASECTGCELCIAPCPVDCISMLPIGEDISNWKWQYPTIPIVEVAAR
>NC_013959.1|WP_013030515.1|2417483_2418059_+|electron-transport-complex-subunit-RsxA
MTDYLLILVSTVLVNNIVMVKILGLCPFMGVSKKLEAAIGMGAATTFVLTLGSGASYLIQHYLLGPDLAYLTTLSFIVVIAGIVQFTEMAIKKTSPELYQILGIYLPLITTNCAVLGIPLLNVQAKHDFMQSLLFGFGGAVGFTLVMILFAGIRERLEGADVPGIFKGSAIAMVTAGLMSLSFMGFSGLVK
>NC_013959.1|WP_013030514.1|2415514_2417383_+|potassium-transporter-Kup
MSQQHKAGTGALALAALGVVYGDIGTSPLYAFKEAFSGTHALAVTEFNVLATLSSMFWAMMLIISCKYVWIMLKFDNDGEGGVLALTALANRSAKGEGRLKLMIVTAGIFAAALFYGDALITPAISVLSAVEGLSVATPAFEKFIIPITVGILAGLFFIQRHGTGSMGKLFGPITLLWFTALAVLGALSIAQTPSVLNAINPVYAIDFALTHPAAMFLLLSAVFLALTGGEALYADMGHFGARPVRLAWYGLVCPALLINYFGQGALVLRSAEAIQNPFYLLSPDWFLLPLVALATAATVIASQATISGAYSMTLQAMRMGYLPRLFIQHTSDSQRGQIYIPAVNWMMMVGVIVLVFQFGSSSALASAYGIAVSGTMIITTLLTISIALMMPGRARILMLPALLIFVLLELMFFSSNLTKVASGGWMPLVLGLFLFLLLSTWKRGSTLIAEQRRKLDIPMSMFITGTQPEVPRVPGTAIYLTADPTFVPSALFHNLKHFKVLHEQTLFLHVVTEDVPYIELKHRLKVTQLAAGMYDIAVHFGFRQEADIPSALEGLPAHGIELEPMNTTFFIARSNVVDGPGGMSAWRCALFSWMTRQSEGAASFFNLPANQVVELGTKVML
>NC_013959.1|WP_013030513.1|2414814_2415501_+|response-regulator
MSEPAILLIEDEAQIRRLVRAALEEEGYRVLECGTLKEGLSQLHADNIQLLILDLGLPDGDGIAFIRELRTQFALPVLVLSARSAEGEKIRALDAGADDYLTKPYSTGELLARVRAQLRRAPQEGATVETQFRFGDIEVDLAQRNVTRKGAAVRLTPIEYTLLCAMLAAPGKVLTYRHLLRTVWGNAFVESNHYLRIYVSHLRQKLEDDPAQPEHFLTETGIGYRFQP
>NC_013959.1|WP_150103092.1|2424396_2425131_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MDLRRRSIYLLPNLFTTAALFAGFYAIVQAMNGKFEFAAVAIFIAMVLDGLDGRVARLTHTQSEFGAEYDSLSDMVSFGVAPSILMYEWAFRDLGKWGWFAAFIYCAGAALRLARFNTNIDVVDKRYFQGLPSPAAAALVAGFVWVMLDNSFTGFELRWYAALLTVFAGLSMVSNLKYYSFKSFNMRKSVPFIVIFLFALFFIFVAQNPPLNLFLLFFGYCLSGYVMWLLGLRKPKTPPPSPQP
>NC_013959.1|WP_013030525.1|2425160_2425799_-|phosphatidylserine-decarboxylase
MNNYPHPIIAREGWPFLAISLVLAVAATVWCATWSIPLWIIFVFVLQFFRDPAREIPQETGIVLSPADGRVIKVERTQDPYAKRDAILVSVFMNVFNVHSNRSPVDGKVEKIEYFPGKFVNADLDKASTENERNAVVLTTTDGQTVTFVQVAGLIARRILCYIKAGDVLSRGQRYGFIRFGSRVDVYLPLTATVKVAIGDKVSATTTILAKL
>NC_013959.1|WP_013030526.1|2425888_2426905_-|ketol-acid-reductoisomerase
MKVYYDKDADLSLIKGKQVTIIGYGSQGHAHAQNLKESGVNVTVALRKNGASWKKAEGAGLKVAEVAAAVKGADVVMMLLPDENIPEVYNTEVAPNMKAGAALAFAHGFNVHYNQVVPRADVDVIMIAPKGPGHTVRSEYLKGGGVPTLIAVYQDKSGKAKDIALSYAAANGGTKGGVIETNFREETETDLFGEQAVLCGGAVELVKAGFETLTEAGYAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGQRVIGDQARAAMKECLNNIQNGSYAKQFILEGRTNYPEMTARRRLNAVHPIEVVGGQLRAMMPWIGKNKLVDQSKN
>NC_013959.1|WP_013030527.1|2426953_2427445_-|acetolactate-synthase-small-subunit
MRHIISLLMENEAGALSRVSGLFSARGYNIESLTVAPTEDPTMSRMTIVTSGSDEVIEQITKQLNKLVDVVTVMDLTDGDHIERELMLVKVRAAGDDREELKRMTDIFRGRVIDVTDKTYTIELTGTGHKLDRFLQAIDQGLILETVRTGASGIGRGDRILKL
>NC_013959.1|WP_013030528.1|2427446_2429153_-|acetolactate-synthase-3-catalytic-subunit
MELTGAEITIRCLQEEGVEYVFGYPGGAVLFIYDELFKQEQVKHVLVRHEQAAVHAADGYARSTEKVGVALVTSGPGVTNAVTGIATAYMDSIPLVVISGQVPTSYIGEDAFQEVDAVGITRPCVKHNFLVKDAKDIASTLKKAFYLAKSGRPGPVLVDIPKDVSQQKAEYSYPATVSIRSYNPQTHGDIGQIKRAAQLLLEAKRPMVYAGGGVILSDAARQLTELVRLLGVPCTNTLMGLGGYPASDKQFVGMLGMHGTYEANLGMQNCDVLLAVGARFDDRVIGNVAHFNSVPRKIIHIDIDPASISKRVKVDVPIVGNVADVLSDLLAVLNSSKQKPDTAALKDWWKQIDEWRGANSLSYKNSTEIIKPQFVIETLHRITHGDAFVTSDVGQHQMWAAQYYKFDQPRRWINSGGLGTMGFGLPAAMGVQLAHPGATVACVTGEGSIQMNIQELSTCKQYNLPVKVIALNNRYLGMVRQWQEFFHGNRYSHSYMDALPDFVKVAEAYGHVGILVEKPSDVEGALKEAFALKDRLVFLDFRTDSTENVYPMVPGGKGLSEVILAEDL
>NC_013959.1|WP_013030529.1|2429275_2429875_+|RNA-polymerase-sigma-factor
MRAEYSGATDLSTPQQLSEFLAQAERRAYKQAQFAVRDEHAALDIVQDAMMKLAERYGDHPAEEFPMLFQRILQNTIRDYYRRQKVRSFWTTLMSALTPQHDVEDFDPLDTLQDEDNESQPAHPDEALAQSQLIEIIEEVLDKLPARQREAFLLRYWEELDTSETAAAMGCSEGSVKTHCSRATHALAALLRERGVDLS
>NC_013959.1|WP_013030530.1|2429871_2430222_+|DUF3619-family-protein
MKNRLTNKDIGHLLNLSANQLDRDIANSLYAARQQALQRQRASTPIWTNQNGLLHGHLRLSPRALNWVIAAVVVSLLAINLSYWNRMVERDHSDIDIAILTDDLPVDMYVDTTNTD
>NC_013959.1|WP_013030531.1|2430225_2430627_+|DUF3106-domain-containing-protein
MPFLLRNIFALLFVAVSCLPVAALAQSWASLTPHQKDALAPLADTWDTLSEKQHVNFLSIARRYPRLSPEKQKRLHAQMTKWSKLTPEQRDHARAKYRAFNKVPAEQREAVKRMVREQQAQAASGVPPAPASP
>NC_013959.1|WP_013030532.1|2430695_2431772_-|LPS-export-ABC-transporter-permease-LptG
MRLLTRYLRREIYASVALVFAALIMLFALLDLVNELNSMGRGDYRLGYVLLFVTLTIPGHIYELFPVAVLIGTIFALVQMAASSELTVYRSSGVSLKQMIVMLVKIGLPLVVLCFLFGEVIAPPSERMAQELRMKAQNLKVSVKEFRSGVWAKDERSFINVRSMLPDTSLLDVSIYEFDATYHLRSITSAEHASYLDEDRWQLDGVRQTLFSKQGATTDNRPRAEWHTSLNPDILSVLLVVPEQMSAWNLYQYTMHLRENHQKTSRYEIAMWNKLVYPLAVLVMMLLALPFSAYQRREGGISGKIFMGIVLGLSFHFVGRLFANVGALNDWSPLLSATAMSWLFLALAMGMLWRTERR
>NC_013959.1|WP_013030533.1|2431768_2432902_-|LPS-export-ABC-transporter-permease-LptF
MTDYPQSLPQKSKKPRPHGIFYWALVREFASTGLLVSSILLGIVVFTQLIRLLGESVSGMLAVDGVLAMLGFTSLNYLPVLLSISLFLSVLLTLSRSYRDSEMVVWFTSGIGLTRWIRPVLGYAIPVTLLIALLSLVLSPWALSKADEFKRRLDSRDDVSAATPGVFRESKQADRVFFLEDVDSQKKRVGNIFVQSTQNGKEGTMVAKEGYQETAPNGDRFLVMLNGTRYEGIPGRADFRIVEFERYAMRIEPAELREDLPHLQAFSTLYLLQNPTAWNLSELEWRIGLPLSALILSLLAIPLSYVNPRAGRSLNLIAAMVIYMFYNNMISVTNSWVARGKISPSAGLLGIHLLMFGVMLVLFYHRSSASSWRRLKR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1618 : 16478

Bacillus_virus(25.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013028143.1\|1618_2722_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	1.7e-38	33.5
WP_013028144.1\|2757_5187_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	2.8e-115	35.3
WP_041420704.1\|5179_5380_+	hypothetical protein	NA	NA	NA	NA
WP_013028145.1\|5671_8302_-	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	1.6e-111	33.4
WP_013028146.1\|8307_8763_-	DUF494 domain-containing protein	NA	NA	NA	NA
WP_013028147.1\|8777_9842_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.7e-27	34.6
WP_013028148.1\|9845_10925_-	LysM peptidoglycan-binding domain-containing protein	G3MBQ1	Bacillus_virus	2.9e-11	47.0
WP_013028149.1\|11015_11519_+	peptide deformylase	Q6VSW0	Vibrio_phage	4.6e-12	38.3
WP_013028150.1\|11529_12459_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.7e-10	28.5
WP_013028151.1\|12461_13736_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_013028152.1\|13710_14343_+	DUF4390 domain-containing protein	NA	NA	NA	NA
WP_013028153.1\|14339_16478_+	PAS-domain containing protein	A0A1V0SGX0	Hokovirus	2.7e-08	25.4

DBSCAN-SWA_2

188485 : 276834

102

uncultured_Caudovirales_phage(15.91%)

transposase,capsid,holin,terminase,tRNA,head,plate,integrase,tail,protease

attL 194895:194915|attR 259796:259816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013028310.1\|188485_189340_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.7e-103	70.9
WP_013028311.1\|189401_190727_+	hypothetical protein	NA	NA	NA	NA
WP_013028312.1\|190747_191215_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_013028313.1\|191247_191796_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	1.5e-16	40.6
WP_013028314.1\|191991_193338_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.1e-112	58.3
WP_013028315.1\|193334_194177_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_013028316.1\|194142_194535_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_013028317.1\|194605_196024_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	7.8e-41	29.4
194895:194915	attL	NA	NA	NA	NA
WP_013028318.1\|196145_197309_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.1e-124	60.9
WP_013028319.1\|197393_198257_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_013028320.1\|198256_199126_+	lipid A biosynthesis acyltransferase	A0A1W6JP29	Morganella_phage	1.2e-28	30.6
WP_041420928.1\|199187_199538_+	endonuclease domain-containing protein	NA	NA	NA	NA
WP_013028322.1\|199575_201039_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
WP_013028323.1\|201096_201717_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_013028324.1\|201909_203394_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_041420930.1\|203390_204740_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA
WP_013028326.1\|204809_205709_+	TIGR01777 family protein	NA	NA	NA	NA
WP_013028327.1\|205885_206176_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	6.1e-17	53.3
WP_013028328.1\|206209_207856_+	chaperonin GroEL	A0A219YK78	uncultured_virus	2.5e-171	60.5
WP_150102911.1\|208537_209272_-	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	9.7e-11	26.9
WP_013028330.1\|209474_209819_+	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	3.8e-10	50.0
WP_013028331.1\|209820_210264_+	hypothetical protein	R9U2Q7	Rhizobium_phage	6.7e-07	30.6
WP_013028332.1\|210260_212375_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1C6ZDN4	Pseudomonas_phage	6.1e-122	40.9
WP_013028333.1\|212440_213187_+	AAA family ATPase	R9U430	Rhizobium_phage	2.7e-32	37.6
WP_013028334.1\|213187_213775_+	hypothetical protein	NA	NA	NA	NA
WP_150103030.1\|213783_214089_+	LacI family transcriptional regulator	A0A0A1IWY8	Pseudomonas_phage	1.7e-09	34.7
WP_150102912.1\|214085_214376_+	hypothetical protein	NA	NA	NA	NA
WP_013028337.1\|214372_214654_+	hypothetical protein	NA	NA	NA	NA
WP_013028338.1\|214650_214896_+	hypothetical protein	NA	NA	NA	NA
WP_013028339.1\|214885_215398_+	hypothetical protein	NA	NA	NA	NA
WP_013028340.1\|215394_215931_+	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	4.1e-27	49.6
WP_013028341.1\|215948_216320_+	hypothetical protein	NA	NA	NA	NA
WP_013028342.1\|216351_216723_+	hypothetical protein	NA	NA	NA	NA
WP_013028343.1\|216748_217117_+	four helix bundle protein	NA	NA	NA	NA
WP_190272156.1\|217320_218517_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	9.5e-48	33.6
WP_013028345.1\|218503_218821_+	hypothetical protein	NA	NA	NA	NA
WP_013028346.1\|218835_219357_+	hypothetical protein	NA	NA	NA	NA
WP_013028348.1\|219469_219802_+	hypothetical protein	NA	NA	NA	NA
WP_013028349.1\|219805_220198_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	1.4e-27	44.5
WP_013028350.1\|220265_220547_+	HU family DNA-binding protein	A0A1P8CWT5	Bacillus_phage	2.7e-09	41.3
WP_013028351.1\|220608_220803_+	hypothetical protein	NA	NA	NA	NA
WP_013028352.1\|220807_221239_+	hypothetical protein	NA	NA	NA	NA
WP_013028353.1\|221240_221675_+	regulatory protein GemA	A0A0M5MRZ7	Ralstonia_phage	3.5e-16	42.7
WP_013028354.1\|221671_222061_+	hypothetical protein	NA	NA	NA	NA
WP_013028355.1\|222092_222452_+	hypothetical protein	NA	NA	NA	NA
WP_013028356.1\|222453_222786_+	hypothetical protein	NA	NA	NA	NA
WP_041420715.1\|223035_223335_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	4.1e-16	43.9
WP_150103031.1\|223388_223958_+	transglycosylase SLT domain-containing protein	Q6QIC7	Burkholderia_phage	1.5e-64	65.5
WP_013028359.1\|223948_224476_+	hypothetical protein	NA	NA	NA	NA
WP_013028360.1\|224472_224691_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_013028361.1\|224691_225102_+	hypothetical protein	NA	NA	NA	NA
WP_013028362.1\|225098_225401_+	hypothetical protein	NA	NA	NA	NA
WP_013028363.1\|225387_225888_+	DUF1804 family protein	I6PBD1	Pseudomonas_phage	3.3e-42	54.8
WP_013028364.1\|225880_227500_+\|terminase	phage terminase large subunit	Q6TM76	Pseudomonas_phage	1.8e-238	74.1
WP_013028365.1\|227493_229071_+	DUF935 domain-containing protein	A0A0M5MS00	Ralstonia_phage	4.5e-154	52.8
WP_013028366.1\|229057_229864_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	2.9e-80	57.0
WP_013028367.1\|229863_230343_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.1e-14	38.1
WP_190272142.1\|230616_231726_+\|protease	phage protease	A0A0M5N0Q6	Ralstonia_phage	3.1e-69	44.5
WP_013028369.1\|231748_232150_+	hypothetical protein	A0A0U5KRP3	unidentified_phage	2.1e-31	57.6
WP_013028370.1\|232176_233085_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2H4J778	uncultured_Caudovirales_phage	1.8e-91	56.7
WP_013028371.1\|233174_233603_+	hypothetical protein	NA	NA	NA	NA
WP_013028372.1\|233602_233977_+	hypothetical protein	A0A2H4J3Y5	uncultured_Caudovirales_phage	1.1e-34	64.1
WP_013028373.1\|233973_234396_+	DUF1320 domain-containing protein	A0A2K9VH41	Faecalibacterium_phage	1.9e-11	39.3
WP_013028374.1\|234392_234995_+	DUF1834 family protein	NA	NA	NA	NA
WP_013028375.1\|235003_235180_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_013028376.1\|235182_236601_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B7SDP8	Haemophilus_phage	1.2e-89	45.4
WP_013028377.1\|236620_236995_+	hypothetical protein	A0A2H4J9F8	uncultured_Caudovirales_phage	4.8e-22	46.5
WP_013028378.1\|236991_237309_+	hypothetical protein	NA	NA	NA	NA
WP_013028380.1\|237490_239404_+\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	2.4e-85	42.4
WP_013028381.1\|239458_240682_+	DNA circularization N-terminal domain-containing protein	A0A2H4JGT4	uncultured_Caudovirales_phage	2.2e-47	32.0
WP_013028382.1\|240665_241790_+\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	4.7e-73	41.4
WP_150103032.1\|241789_242350_+\|plate	phage baseplate assembly protein V	F6MIL4	Haemophilus_phage	6.5e-23	47.8
WP_013028384.1\|242349_242721_+	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	6.0e-25	52.0
WP_013028385.1\|242723_243782_+\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	6.7e-37	33.8
WP_013028386.1\|243778_244333_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_013028387.1\|244345_245671_+	hypothetical protein	NA	NA	NA	NA
WP_013028388.1\|245673_246201_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_013028389.1\|246200_246659_+	hypothetical protein	NA	NA	NA	NA
WP_013028390.1\|246791_246977_+	Com family DNA-binding transcriptional regulator	Q5ZQW8	Pseudomonas_phage	7.6e-05	59.0
WP_013028391.1\|246951_247740_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	8.3e-109	69.9
WP_013028392.1\|247881_248265_+	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA
WP_013028393.1\|248434_250477_+	adenylate/guanylate cyclase domain-containing protein	A0A2H4N7Z5	Lake_Baikal_phage	2.1e-71	28.2
WP_013028394.1\|250551_254307_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_013028395.1\|254355_254751_+	hypothetical protein	NA	NA	NA	NA
WP_013028396.1\|254845_256099_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_013028397.1\|256095_257178_+	peptide chain release factor 1	NA	NA	NA	NA
WP_013028398.1\|257182_258043_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_013028399.1\|258296_259682_-	argininosuccinate lyase	NA	NA	NA	NA
WP_013028400.1\|259718_260750_+	histidine kinase	NA	NA	NA	NA
259796:259816	attR	NA	NA	NA	NA
WP_013028401.1\|260755_261520_+	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	1.1e-09	24.7
WP_013028402.1\|261523_262216_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.5e-24	29.3
WP_013028403.1\|262199_263450_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_013028404.1\|263670_264984_+	hypothetical protein	NA	NA	NA	NA
WP_013028405.1\|265588_266908_+	hypothetical protein	NA	NA	NA	NA
WP_013028406.1\|267345_268683_+	hypothetical protein	NA	NA	NA	NA
WP_013028407.1\|268829_271598_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_013028408.1\|271697_272642_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_013028409.1\|272634_273411_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_013028410.1\|273407_274487_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_013028411.1\|274483_275644_+	heme biosynthesis protein HemY	NA	NA	NA	NA
WP_150102914.1\|275783_276200_+	hypothetical protein	NA	NA	NA	NA
WP_013028413.1\|276267_276834_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA

DBSCAN-SWA_3

655163 : 664403

Staphylococcus_phage(25.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013028787.1\|655163_655568_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.3e-17	43.2
WP_013028788.1\|655628_656498_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	5.5e-37	36.3
WP_013028789.1\|656669_657917_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.4e-94	52.2
WP_013028790.1\|657926_658403_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_150103043.1\|658423_659491_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	3.6e-46	35.9
WP_013028792.1\|659493_660090_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.0e-30	38.1
WP_013028793.1\|660280_661381_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-47	32.8
WP_013028794.1\|661377_661830_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	4.6e-11	35.2
WP_013028795.1\|661826_662279_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_013028796.1\|662294_663242_+	thiamine-phosphate kinase	NA	NA	NA	NA
WP_013028797.1\|663225_663729_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_013028798.1\|663725_664403_+	thermonuclease family protein	A0A218ML12	uncultured_virus	1.8e-06	31.4

DBSCAN-SWA_4

1952422 : 1963294

Burkholderia_phage(44.44%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_190272127.1\|1952422_1953778_-\|terminase	phage terminase large subunit	A0A1X9SGU8	Bradyrhizobium_phage	1.3e-72	36.8
WP_013030050.1\|1953851_1954328_-	DUF2280 domain-containing protein	A9YWZ5	Burkholderia_phage	1.2e-33	53.9
WP_041420838.1\|1954360_1955017_-	hypothetical protein	A9YWZ4	Burkholderia_phage	1.3e-59	54.8
WP_013030052.1\|1955436_1955715_-	hypothetical protein	NA	NA	NA	NA
WP_013030053.1\|1955711_1956083_-	hypothetical protein	NA	NA	NA	NA
WP_013030054.1\|1956079_1956274_-	hypothetical protein	NA	NA	NA	NA
WP_013030056.1\|1956380_1956611_-	hypothetical protein	NA	NA	NA	NA
WP_013030057.1\|1956607_1957039_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	2.6e-32	50.7
WP_150102990.1\|1957035_1957395_-	hypothetical protein	NA	NA	NA	NA
WP_013030061.1\|1957767_1958307_-	DUF1367 family protein	A0A0M3LPN2	Mannheimia_phage	2.5e-16	38.1
WP_013030062.1\|1958303_1958954_-	hypothetical protein	Q3HQZ7	Burkholderia_phage	1.7e-51	48.5
WP_013030063.1\|1958940_1959687_-	hypothetical protein	I3PUZ7	Vibrio_phage	1.4e-33	58.8
WP_013030064.1\|1959689_1962221_-	DNA methylase N-4	A0A1J0GPR3	Mycobacterium_phage	5.3e-306	61.5
WP_013030065.1\|1962217_1962520_-	hypothetical protein	NA	NA	NA	NA
WP_013030066.1\|1962516_1962900_-	hypothetical protein	NA	NA	NA	NA
WP_041421213.1\|1963054_1963294_-	helix-turn-helix domain-containing protein	A0A2D1GND2	Pseudomonas_phage	5.0e-09	49.2

DBSCAN-SWA_5

1972747 : 1988494

Bacillus_phage(18.18%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013030080.1\|1972747_1973683_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	1.7e-39	33.1
WP_150102992.1\|1973736_1973922_+	hypothetical protein	NA	NA	NA	NA
WP_013030082.1\|1973915_1975745_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	1.8e-138	52.6
WP_013030083.1\|1975741_1976965_+	phosphoadenosine phosphosulfate reductase family protein	R9TRT5	Rhizobium_phage	3.5e-154	66.3
WP_013030084.1\|1976961_1977558_+	hypothetical protein	NA	NA	NA	NA
WP_013030085.1\|1977554_1977911_+	hypothetical protein	NA	NA	NA	NA
WP_013030086.1\|1977903_1978899_+	phage Gp37/Gp68 family protein	A0A0F6SJL4	Mycobacterium_phage	1.3e-74	48.0
WP_013030087.1\|1978895_1979390_+	DUF1643 domain-containing protein	A0A0U1W068	Pseudomonas_phage	7.2e-26	41.3
WP_013030088.1\|1979556_1979949_+	hypothetical protein	F8TUL1	EBPR_podovirus	1.2e-31	48.0
WP_013030089.1\|1979945_1980509_+	hypothetical protein	A0A218M303	Acidovorax_phage	2.2e-34	38.9
WP_013030090.1\|1980505_1980766_+	DUF4031 domain-containing protein	A0A291LA06	Bordetella_phage	2.9e-18	58.0
WP_013030091.1\|1980746_1981049_+	hypothetical protein	NA	NA	NA	NA
WP_013030092.1\|1981135_1981624_+	single-stranded DNA-binding protein	A0A291LA01	Bordetella_phage	2.2e-35	65.5
WP_013030095.1\|1982045_1983620_+	recombinase family protein	A0A0S2SXR4	Bacillus_phage	9.0e-22	26.7
WP_150102993.1\|1983814_1984192_+	hypothetical protein	NA	NA	NA	NA
WP_013030097.1\|1984331_1985420_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013030098.1\|1985419_1988494_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	7.8e-78	24.3

DBSCAN-SWA_6

2386621 : 2396745

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013030484.1\|2386621_2387359_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.8e-26	32.3
WP_013030485.1\|2387355_2388102_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013030486.1\|2388098_2389427_+	GldG family protein	NA	NA	NA	NA
WP_013030487.1\|2389430_2390246_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	F8WPX6	Bacillus_phage	2.3e-21	29.6
WP_190272133.1\|2390247_2392530_-	bacteriohemerythrin	G3MA91	Bacillus_virus	8.5e-21	33.3
WP_013030489.1\|2392745_2393000_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	5.5e-22	61.8
WP_013030490.1\|2393011_2393488_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.1e-26	41.7
WP_013030491.1\|2393484_2394024_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_013030492.1\|2394020_2395391_-	insulinase family protein	NA	NA	NA	NA
WP_013030493.1\|2395380_2396745_-	insulinase family protein	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	8.4e-24	24.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage