CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_007576	Lactobacillus sakei subsp. sakei 23K, complete genome	1 crisprs	csa3,cas3,DinG,DEDDh	0	0	7	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_007576_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_007576_1

205396-205955

Orphan

Consensus_repeat	Method
TTAGATGTTTCAAATTGGGATAC	CRISPRCasFinder
ATTACCGAATTAGATGTTTCAAATTGGGATAC	PILER-CR

7 spacers

csa3

The CRISPR arrays of NC_007576_1

>merge|NC_007576|1|205396-205955|CRISPRCasFinder,PILER-CR
TTAAATAGTACGAATTGGGACACTTCTAATATTCAAAATATGAATAATACATTTTTCAATTGTACGGCCTTAACGAACTTAGATGTTTCAAAATGGCAGACGGCAAAAATGACTAATCTGGGGAGTACCTTTTCACAATCGGGCATTACTGTTTTAGATGTTTCAAATTGGGATACCAGTCACGTTACTAATTTAAGTAGTACTTTTCTGAATACTAGTATTGCCGAATTAGATGTTTCGAATTGGGATACAAGCCAAGTGACGACAATGGCTTATACTTTTTCGGGATGTTCAAGACTTGAAACCTTAGATGTCTCAAAATGGCAGCTCGGCAAAAATACATCGTTGTCTTACACGTTCAGCGGTGATCAAAGATTAACGCAGTTAGACGTTTCTAAGTGGCAAACCGCTAATGTGACGAATATGGCTTCAACATTTTCCGGGACTGTCGGTGTTAAGACTTTAGCGGTTAAAGATTGGCAGACCACTAAAGTGATAACCATGGCGGGCATGTTTGCCAAGAGTGGCGTTGATCAGTTAGAAATTGCTGATTGGGATAC

>NC_007576|1|1|205396-205955|CRISPRCasFinder
TTAAATAGTACGAATTGGGACAC	TTCTAATATTCAAAATATGAATAATACATTTTTCAATTGTACGGCCTTAACGAAC
TTAGATGTTTCAAAATGGCAGAC	GGCAAAAATGACTAATCTGGGGAGTACCTTTTCACAATCGGGCATTACTGTT
TTAGATGTTTCAAATTGGGATAC	CAGTCACGTTACTAATTTAAGTAGTACTTTTCTGAATACTAGTATTGCCGAA
TTAGATGTTTCGAATTGGGATAC	AAGCCAAGTGACGACAATGGCTTATACTTTTTCGGGATGTTCAAGACTTGAAACC
TTAGATGTCTCAAAATGGCAGCT	CGGCAAAAATACATCGTTGTCTTACACGTTCAGCGGTGATCAAAGATTAACGCAG
TTAGACGTTTCTAAGTGGCAAAC	CGCTAATGTGACGAATATGGCTTCAACATTTTCCGGGACTGTCGGTGTTAAGACT
TTAGCGGTTAAAGATTGGCAGAC	CACTAAAGTGATAACCATGGCGGGCATGTTTGCCAAGAGTGGCGTTGATCAG
TTAGAAATTGCTGATTGGGATAC

>NC_007576|1|1|205474-205646|PILER-CR
TTAGATGTTTCAAAATGGCAGACGGCAAAAAT	GACTAATCTGGGGAGTACCTTTTCACAATCGGGCATTACTGTTTTAGA
TGTTTCAAATTGGGATACCAGTCACGTTACTA	ATTTAAGTAGTACTTTTCTGAATACTAGTATTGCCGAATTAGA
TGTTTCGAATTGGGATAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_007576.1\|WP_011373920.1\|203427_204420_+\|choloylglycine-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238303
NC_007576.1\|WP_011373916.1\|198756_199446_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|172606
NC_007576.1\|WP_011373926.1\|211636_211906_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_007576.1\|WP_011373917.1\|199841_201965_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NC_007576.1\|WP_011373852.1\|210684_211605_+\|IS30-like-element-ISLsa1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_007576.1\|WP_011373929.1\|213406_213964_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_007576.1\|WP_011373914.1\|196550_197105_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NC_007576.1\|WP_011373927.1\|212039_212696_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238089
NC_007576.1\|WP_011373915.1\|197101_198661_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_007576.1\|WP_099769415.1\|215917_216987_+\|IS3-like-element-IS1520-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_007576.1\|WP_011373918.1\|202005_202542_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225786
NC_007576.1\|WP_011373928.1\|212783_213101_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NC_007576.1\|WP_011373924.1\|209193_209346_+\|hypothetical-protein	unknown	unknown	unknown
NC_007576.1\|WP_157769662.1\|204585_204741_-\|hypothetical-protein	unknown	unknown	unknown
NC_007576.1\|WP_011373919.1\|202613_203231_-\|DUF1361-domain-containing-protein	unknown	unknown	gnl\|CDD\|369208
NC_007576.1\|WP_011373923.1\|208153_209191_+\|DUF916-and-DUF3324-domain-containing-protein	unknown	unknown	gnl\|CDD\|371730
NC_007576.1\|WP_157859367.1\|195399_196407_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_007576.1\|WP_082267982.1\|214070_215201_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NC_007576.1\|WP_011373912.1\|194411_195320_+\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NC_007576.1\|WP_011373925.1\|209407_210391_+\|cell-surface-protein	unknown	unknown	gnl\|CDD\|372694

Protein	Function_ID	Function_description	E-value
NC_007576.1\|WP_011373920.1\|203427_204420_+\|choloylglycine-hydrolase-family-protein	gnl\|CDD\|238303	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which PVA belongs. This nucleophilic cysteine is exposed by post-translational prossessing of the PVA precursor. PVA forms a homotetramer.	4.69946e-149
NC_007576.1\|WP_011373916.1\|198756_199446_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|172606	PRK14116, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	1.12494e-164
NC_007576.1\|WP_011373926.1\|211636_211906_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.69959e-12
NC_007576.1\|WP_011373917.1\|199841_201965_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NC_007576.1\|WP_011373852.1\|210684_211605_+\|IS30-like-element-ISLsa1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.37768e-76
NC_007576.1\|WP_011373929.1\|213406_213964_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.31956e-13
NC_007576.1\|WP_011373914.1\|196550_197105_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	3.48625e-10
NC_007576.1\|WP_011373927.1\|212039_212696_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.44372e-21
NC_007576.1\|WP_011373915.1\|197101_198661_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.83511e-67
NC_007576.1\|WP_011373918.1\|202005_202542_+\|membrane-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	1.60915e-13
NC_007576.1\|WP_011373928.1\|212783_213101_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.27741e-39
NC_007576.1\|WP_099769415.1\|215917_216987_+\|IS3-like-element-IS1520-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.9979e-35
NC_007576.1\|WP_011373919.1\|202613_203231_-\|DUF1361-domain-containing-protein	gnl\|CDD\|369208	pfam07099, DUF1361, Protein of unknown function (DUF1361). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.	1.50209e-27
NC_007576.1\|WP_011373923.1\|208153_209191_+\|DUF916-and-DUF3324-domain-containing-protein	gnl\|CDD\|371730	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324). This family consists of several hypothetical bacterial proteins of unknown function.	5.84184e-43
NC_007576.1\|WP_157859367.1\|195399_196407_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.62929e-103
NC_007576.1\|WP_082267982.1\|214070_215201_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.19463e-142
NC_007576.1\|WP_011373912.1\|194411_195320_+\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	1.63609e-126
NC_007576.1\|WP_011373925.1\|209407_210391_+\|cell-surface-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	0.00107555

>NC_007576.1|WP_157769662.1|204585_204741_-|hypothetical-protein
MIVSEDALAGASTAFTSVVITELANMFTINNKVMHNLNSLNTYHLNHLLPI
>NC_007576.1|WP_011373920.1|203427_204420_+|choloylglycine-hydrolase-family-protein
MCTSLTYSTVDGHHFLARTMDFSFELNGNPLFLPRQHQWQPVLEKQAIQNQYALMGAGAKLGDQYLVADGFNEHGLGCAELYFAHAAVYEPQPVPNKLNLVAEEFIVWVLGNHQTLEEVAADLDNVRIIESDQGVMGANQPLHWILSDRSGKTMVIEPRGNGLQLIDDPVGVMTNTPDLDWHIKNLSNYLNLQPQPFMERPFGNYQAGLFSQGTGTQALPGSYTPPDRFVRAAYSRQYMPEANNVAEGVNHILHILDNVTIPKGVNIGSGGSSDYTQYQGISGLNNLAYYMVNYDNRHVYQTNLTTDLIENQKEPLIYHLPQGQQNTILN
>NC_007576.1|WP_011373919.1|202613_203231_-|DUF1361-domain-containing-protein
MSKKVLTIHAIILLFFALILLYQSRFAFLIWNIILALIPFDLSLLGRLFKNSRWRYLIGVVWLLFFPNALYMITDFSHLSSIGVGLSTAFQFVEYAILAGGIFIGVTLGLTSLFILYPLFIPNHQRLINQVATFGVLSVCSSVAIYIGRFLRINSWDVFYQLHTTIASVLSILNQSDFWIFVVAFSILQLILMLMGYQLAQSDDL
>NC_007576.1|WP_011373918.1|202005_202542_+|membrane-protein
MLSKNISNKLRQATGVNGLLSLILGLLILFLPGQSAMGVTVMVGVVFIIIGLFDILSIFKEVDENTWVRLGHLLLGLLYLIVGIFVCVNLAASATYLFLLVGIFVGITWLVEGFVELGTVQLAVSKGWTIFSAVLSIVAGIILLMTPLYGAVMLWTLLGAILVVLGIFKVAHYLAWQK
>NC_007576.1|WP_011373917.1|199841_201965_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEKLGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIVAGKVPETIKDKEIYSIDLSSLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRNTILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHLAAKRPETDKAKLAAELKQLEADKAEAVEAENYQTAEDLKVRIEKIKTQLENNDQHAAVMIATVDDIAQSVERLTGIPVAKMGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAIIRLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDFKNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKELTLVVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAADSEN
>NC_007576.1|WP_011373916.1|198756_199446_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MAKLVFIRHGQSEWNLSNQFTGWVDVNLSEEGVRQAQNAGALLKKEGILFDQAYTSVLTRAIKTLHYALEGSDQLWIPETKSWRLNERHYGALQGQNKAEAAEKWGDEQVHIWRRSYDTLPPLLDASDEGSAANDRRYAHLDPKAIPGGENLKVTLERVIPFWEDEIAPKLIDGQNIIVAAHGNSLRALTKYIENISDEDIMDVEMATGEPVVYDLDENLNVVSKKKLN
>NC_007576.1|WP_011373915.1|197101_198661_+|MFS-transporter
MKKTTNRWIALVAMSLGVFMGLLDVTVVNVALPSMAVDFKTTFSNLQWVLNAYTLMYAVSLLIVSKLGDMFGRKKIFIMSMILFTAASVVNGLAPNLLVLDIGRAIQAIGGSGMMSLSMALVASNFEGRERGTALGILGSVIGFSTAIGPLVGGFLVESFGWPSIFFVNLPVGIISVYLVIRNVKETPAYGAGESIDFMGMFLSAIGLFSGIYGLIQKEQHMHWAWTDMRIMGWLVASVLILALFVFVELKAKAPMMNLTLLTNRHFVGVVILAFSLGAGIFALAAYQTSLMQNYMGYSAFSTGVHQLPMSLWSLVLGPFTGVLGYKFGKKWLIAFGFTVSALGLLIFRQVTTTDFTYMQLLPLLALTGLGNAIINPMINTAAMDNINPQEIGMASGLLNVFRQIGITVGVVILGLSQTNAYESSLSTGFSGSSIPKAAATGIHQSLVEAGAFSGHAIAWGQQLVKTPYAAKVQQMVVTAFDKGMIAVVTTSLVLMVIAILAALFLLKETKSVDQKPQK
>NC_007576.1|WP_011373914.1|196550_197105_+|PadR-family-transcriptional-regulator
MYELLMLSALMSRNMSGYKLRIILENAMLPRRKISNGVLYPLLDKLENKGCIGFDEADQDSRGTKIAHITEEGRRYFAELMTKPVAHDAKWDDAYRFKMRGMHYIDSEEQISILQDYRNELAEDLHVYLGIKNHLTDLRDEEGTNTNYYQWQVRSMDFVITTLKAKVDWLEAQIKEIEKMEIVK
>NC_007576.1|WP_157859367.1|195399_196407_+|LacI-family-transcriptional-regulator
MVRKVTIKDVAALAQTSVTTVSLILNNKGQRFSAETIARVRAAREKISYEPDYFAQNMVNKETKTIAVLVPDINNPFFSQFIQGVEEVAYQYDFIPLIYSAGQNNQKVNYYLKELVRRNVDGFILAVSHIEEETLEGHLKQRKIPYILLDQSEKQHQSDEIAVADTEGGRMAANYLIEKGHRQIGIVLPEQRAWNIEQRFIGYQVALVSHQITVNPDWQITTPLSKQGGYQVAQQVIDSGVSAVFAVNDELAIGLARGLAELGHAVPESISIIGYDDIDWCEYVTPRLTTIKQPILALGQEATRLLLNRIEKPTLGMQQKMLSVELVERDSVQAQ
>NC_007576.1|WP_011373912.1|194411_195320_+|ribokinase
MKKVIVLGSTNVDTILNVQRFPQPGETLAMDGRAVAGGGKGANQAIAAVRSGAQTAFISKVGKEGAADFMIDTFKKDGMNVDHVRCSETAGTGQAYIMVDAHGQNSILIYGGANQDVTVEDVHEAETAIKAADRIVAQFEVPIPAIIEAFKIARANGVQTILNPAPAIKNIPTELLAVTDMIVPNETEAEIITGIKVTDEASMQANAEAMFKLGIKVVIITVGSKGSFYATPTATGFVPAFKVNAVDTTAAGDTFIGALSTKLELDYSNIEAAMTYANKASSIAVQTKGAQNSIPYEKDIQL
>NC_007576.1|WP_011373923.1|208153_209191_+|DUF916-and-DUF3324-domain-containing-protein
MRLRKWTTGLAVGLFGWLLLASNQPVSAAQEHIDFEVEKVKSNRQVDQENRFFDLGIEPGKKETIQVLVHNFSDKNIKVHSEIDNSLTQQGGGIIYRPTKDGIIKETSHTLMDVAKVHRADRVITLGPNEVKKVSATITMPSEQTKGMIYGAWHFIEYGQKETDNHSNVSGSYAYNMGIVLRGKPYEIYPELKYQGVNPTVRNGHPALGIQLNNTKPMAIKNAKVKAVVYKNGFFKDKRVYETDSVDVAPNSQWTVPISWAFDRLKPGRYNISISVKGNSYWNQLPMSWHFRKKITINQQQADKINQASVKKPVNKWAYVATASGVLMMVSFWFVYRVLKLTRGL
>NC_007576.1|WP_011373924.1|209193_209346_+|hypothetical-protein
MQHLITKWGPKKARLATFIVSGGLTIWFVLTLYLAIKFYLDLQKITIITM
>NC_007576.1|WP_011373925.1|209407_210391_+|cell-surface-protein
MKFTKLTSTVLTASTLLAILAPATIASAATPKDDAAANGGTKLPMTDTTDAGISFGDTHDNGNSGYLRLQMVPKTLDFGNHAKYDAAHTNFDATGANLGVVGNDTHASYDQQDSNKTETLTTSDANLKAVQGTAWVTVVDKQVTRQHADGMDAATTQKAGDWDLKVSTAEPLKTTSGQEIDGANLLFKHTKYALTSGVYELTNSDQDKTFAKDLADYKASIATPPATPKADGDDGDPAPAPSAGDVAINETAKDAITDTFSLSLAAPTSKLGTAAGTVVGKADTDTGTGANVFAWAPEDIQLVMPTDAAVANAIYKTSLTWTLETGK
>NC_007576.1|WP_011373852.1|210684_211605_+|IS30-like-element-ISLsa1-family-transposase
MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLSTASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNTAFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIERFRACSD
>NC_007576.1|WP_011373926.1|211636_211906_+|MarR-family-transcriptional-regulator
MEGTQSPSELAMVFKISSPIVTRKLNVLQDKKMIEKLRGERQDQRLVNITITDEGRKIYKKVNRDITEWEEHRQSTAVPTLGRSFLGQQ
>NC_007576.1|WP_011373927.1|212039_212696_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MEEQILQYRDAVYEQVVKVGKSLGNVTRLRILDLLVQGPKTVENLANTIGLSVATTSRNLQILKKARLVEIERHKNFVTYRLTSDQIKQLISLLVTVAEQSQPELAAIQTTFKQQTGSPQALTISALKAKLTAESTYLVDLRPNDEYETQHLPGAHNIPYDELPQHLAELPQDKEIVVYCRGRLCAYANVASQALHDAGFKVATFNQSVWEWNQLMSS
>NC_007576.1|WP_011373928.1|212783_213101_+|thioredoxin
MTAQILNEANFNDEIKEGVTLVDFWATWCPPCKMQGPIVEQLADDYAGKAKIAKVDVDQNQNLAAQFGIQAIPTLLIMKDGQLQEQLVGLQRKEALATKLDATLA
>NC_007576.1|WP_011373929.1|213406_213964_+|helix-turn-helix-transcriptional-regulator
MSSNNNIVNNIGEQIKQLRQSKKISVEKLSELSGLSSLTITKIENGKSNPTINTLWKLTKCLEAPLMSLFKNRGSNVVFSTENHGYFLEDENHKWEVEPIVGQFDFEVYKVRLKANSKYYLDSQTSNTLEVITVLSGTLNLRVEHDSYIVHEHNTIYFINNNSHEYINDTNEDILMNIVVKYENL
>NC_007576.1|WP_082267982.1|214070_215201_+|MFS-transporter
MIFVATNLRAPLTAVGPLTGLIKDNIGISGTIAGFLTTIPLLAFAILSPVAPKIAEKLSLEYTIGYSTIVLVIGLFIRSIPQTSTLLFGTILVGSAIAMCNVLIPSLIKREFNHRLGLITGIYSISMNLCGAIASGVSFPLANNLNLGWNNSLRIWLILALIACIAWIPQLKRHDKPDKIEELPIENSIWHSKTAWQVTIFMGLQSLVFYVLVAWLPEMLIQKGFTAEQAGYLLSMMQLFLLPFTFIIPIIAGRVKRQSKIAINTSILMCLGISGLFINNTIIIIIGIAFIGISGGCAFGLSMMFFNLKTRNAREGAELSGMAQSIGYLLAAIGPTLFGFMHDMTHNWNVSLIILIVTAILLGGFGFFAGEDNYIN
>NC_007576.1|WP_099769415.1|215917_216987_+|IS3-like-element-IS1520-family-transposase
MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIKQADPNNTKVLSSNERALIKENKRLKEELDIFKTSGGAHGKKLIIKGRALVLEVVNANLLAGHRITRILSVLKIPRSTYYDYLHWQPSRTERRRHLIKQEVLTAWLRYPMYGYPRLTILLNQQSDIHVSQRLVYQQMCELGIRSRMVKRINKPTTQTDYDQRPNLIKQLTDQSGILLTDITYIPLNHTWCYLASVYNPVTRRVIAYQLNTQMTKELATNVITQVMAQAVKPQIIHSDMGSQYTSDLFENTLSKYGIKHSYSRKGQPGDNARIESFHSILKREYVNFQDFKTIHEAIAGIDNYIRWYNSDRISLVA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

532112 : 584611

Streptococcus_phage(25.0%)

bacteriocin,protease,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011374223.1\|532112_532487_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_011374224.1\|532624_533566_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_041821019.1\|533693_534521_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_011374226.1\|534538_535561_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_099712946.1\|535733_536081_+	hypothetical protein	NA	NA	NA	NA
WP_011374228.1\|536197_537118_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	4.4e-85	51.1
WP_011374229.1\|537273_538998_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	9.5e-182	55.0
WP_011374230.1\|539122_539755_+	HD domain-containing protein	NA	NA	NA	NA
WP_011374231.1\|539962_541966_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_011374232.1\|541975_544828_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.7e-305	54.8
WP_011374233.1\|544949_545486_+	membrane protein	NA	NA	NA	NA
WP_011374234.1\|545611_546496_+	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	8.4e-09	31.0
WP_011374235.1\|546492_547527_+	YvcK family protein	A1IMD5	Streptococcus_phage	1.5e-94	54.8
WP_011374236.1\|547529_548474_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.3e-52	39.0
WP_011374237.1\|548566_549022_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011374238.1\|549135_549660_-	DsbA family protein	NA	NA	NA	NA
WP_004265909.1\|549883_550468_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.3e-52	53.9
WP_011374239.1\|551010_551592_-	glycoside hydrolase family 73 protein	A0A0A7RUS8	Clostridium_phage	2.6e-22	43.3
WP_011374240.1\|551807_552767_+	nucleoside hydrolase	NA	NA	NA	NA
WP_011374241.1\|552958_558922_+	hypothetical protein	NA	NA	NA	NA
WP_011374242.1\|559647_560292_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_011374243.1\|560391_560772_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011374244.1\|560935_561682_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_011374247.1\|562707_563562_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011374248.1\|563677_564796_-	NAD(P)-dependent alcohol dehydrogenase	M1PHA2	Moumouvirus	4.2e-13	30.2
WP_011374249.1\|564906_565548_-	3-methyladenine DNA glycosylase	NA	NA	NA	NA
WP_011374250.1\|565686_566559_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	9.8e-18	29.1
WP_011374251.1\|566562_567306_+	ABC transporter permease	NA	NA	NA	NA
WP_011374252.1\|567305_567506_+	hypothetical protein	NA	NA	NA	NA
WP_011374254.1\|567709_568429_+	sensor histidine kinase	NA	NA	NA	NA
WP_011374255.1\|568421_569027_+	response regulator transcription factor	NA	NA	NA	NA
WP_011374256.1\|569096_569423_+	hypothetical protein	NA	NA	NA	NA
WP_011374257.1\|569546_571187_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011374258.1\|571266_571674_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_011374259.1\|571739_572036_-	hypothetical protein	NA	NA	NA	NA
WP_011374260.1\|572241_572604_+	hypothetical protein	NA	NA	NA	NA
WP_011374261.1\|572732_573623_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.1e-19	33.3
WP_011374262.1\|573622_574489_+	ABC transporter permease	NA	NA	NA	NA
WP_011374263.1\|574515_574968_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_011374264.1\|574973_575381_+	DUF3021 domain-containing protein	NA	NA	NA	NA
WP_011374265.1\|575440_575788_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_011374266.1\|575964_576099_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_041820756.1\|576113_576956_+	hypothetical protein	NA	NA	NA	NA
WP_011374268.1\|576892_577444_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_011374269.1\|577445_578192_+	response regulator transcription factor	NA	NA	NA	NA
WP_011374270.1\|578357_578501_+	hypothetical protein	NA	NA	NA	NA
WP_011374271.1\|578522_578687_+	hypothetical protein	NA	NA	NA	NA
WP_011374272.1\|578712_579381_+	hypothetical protein	NA	NA	NA	NA
WP_011374273.1\|580227_580398_+	hypothetical protein	NA	NA	NA	NA
WP_011374274.1\|580430_580613_+	hypothetical protein	NA	NA	NA	NA
WP_011374275.1\|580754_581087_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_041820762.1\|581096_581393_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_011374278.1\|581624_581861_+	hypothetical protein	NA	NA	NA	NA
WP_011374279.1\|581933_582257_-	hypothetical protein	NA	NA	NA	NA
WP_011374280.1\|582340_582625_+	hypothetical protein	NA	NA	NA	NA
WP_011374281.1\|582794_583835_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	A0A1W6JHY1	Lactococcus_phage	5.1e-13	33.8
WP_011374282.1\|583978_584611_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

595886 : 603628

Streptococcus_phage(42.86%)

integrase

attL 595772:595786|attR 605261:605275

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
595772:595786	attL	NA	NA	NA	NA
WP_011374295.1\|595886_597044_-\|integrase	site-specific integrase	P97010	Streptococcus_pyogenes_phage	5.2e-59	39.5
WP_011374297.1\|597220_597478_-	prophage lsa1 protein	Q9JMN3	Wolbachia_phage	1.4e-12	51.2
WP_011374298.1\|597575_598355_-	helix-turn-helix transcriptional regulator	L0P7E1	Lactobacillus_phage	1.2e-11	54.1
WP_011374299.1\|598495_598687_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011374300.1\|598689_598962_+	hypothetical protein	NA	NA	NA	NA
WP_011374302.1\|599318_599573_+	hypothetical protein	NA	NA	NA	NA
WP_101494628.1\|599562_600354_+	DNA primase	A0A0B5A5U2	Streptococcus_phage	9.1e-39	36.4
WP_011374304.1\|600344_601838_+	DNA primase	A0A1P8VVM0	Streptococcus_phage	3.2e-69	34.9
WP_011374305.1\|602117_602510_+	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	5.5e-13	41.7
WP_011374306.1\|602653_602959_+	hypothetical protein	NA	NA	NA	NA
WP_101494090.1\|602984_603104_+	DUF2292 domain-containing protein	NA	NA	NA	NA
WP_011374308.1\|603205_603628_+	transcriptional regulator	A0A141E173	Streptococcus_phage	4.7e-10	34.3
605261:605275	attR	NA	NA	NA	NA

DBSCAN-SWA_3

658094 : 666388

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011374363.1\|658094_659390_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	8.0e-16	29.6
WP_011374364.1\|659502_660228_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	4.1e-38	40.4
WP_011374365.1\|660220_660481_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_011374366.1\|660477_661164_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_011374367.1\|661153_663379_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.2e-150	41.5
WP_011374368.1\|663354_664788_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.5e-51	33.9
WP_011374369.1\|664793_665822_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.3e-65	44.6
WP_011374370.1\|665818_666388_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.4

DBSCAN-SWA_4

990581 : 998025

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025015768.1\|990581_991427_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.7e-20	44.2
WP_011374702.1\|991622_992123_-	dihydrofolate reductase	G3MBI7	Bacillus_virus	2.7e-28	38.7
WP_011374703.1\|992133_993084_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	7.9e-122	64.0
WP_011374704.1\|993279_995169_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	8.8e-48	29.3
WP_011374705.1\|995281_995743_-	hypothetical protein	NA	NA	NA	NA
WP_011374706.1\|995811_997005_-\|tRNA	CCA tRNA nucleotidyltransferase	A0A249XS88	Mycobacterium_phage	2.3e-33	33.0
WP_011374707.1\|997152_998025_+	YitT family protein	M1Q1P6	Streptococcus_phage	2.2e-57	41.5

DBSCAN-SWA_5

1134935 : 1142684

Mycobacterium_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011374846.1\|1134935_1135946_-	serine hydrolase	S5Z991	Mycobacterium_phage	1.8e-07	27.1
WP_011374847.1\|1136043_1137921_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.6e-60	33.0
WP_011374848.1\|1137920_1139651_-	ABC transporter ATP-binding protein	F2Y165	Organic_Lake_phycodnavirus	1.0e-18	29.1
WP_011374849.1\|1139674_1140316_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011374850.1\|1140520_1141249_+	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	1.6e-37	44.9
WP_011373852.1\|1141270_1142191_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_004270328.1\|1142483_1142684_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.1e-22	78.5

DBSCAN-SWA_6

1148424 : 1156842

Enterococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011374860.1\|1148424_1149729_-	Y-family DNA polymerase	Q6DMX4	Streptococcus_phage	1.3e-85	39.9
WP_011374861.1\|1149728_1149974_-	hypothetical protein	NA	NA	NA	NA
WP_101494639.1\|1149993_1150260_-	hypothetical protein	NA	NA	NA	NA
WP_011374863.1\|1150394_1151120_-	LysM peptidoglycan-binding domain-containing protein	A0A096XT26	Enterococcus_phage	8.4e-15	60.0
WP_011374864.1\|1151362_1153405_-	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	8.9e-70	35.5
WP_011374865.1\|1153562_1153736_+	hypothetical protein	NA	NA	NA	NA
WP_011374866.1\|1153868_1154348_+	nucleoside deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	3.8e-16	37.2
WP_011374867.1\|1154399_1155773_-	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	5.1e-45	30.4
WP_011374868.1\|1156122_1156842_-	aquaporin family protein	M1HCP3	Acanthocystis_turfacea_Chlorella_virus	1.7e-28	34.1

DBSCAN-SWA_7

1253853 : 1261962

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011374969.1\|1253853_1255599_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.5e-46	27.9
WP_011374970.1\|1255740_1255971_-	YneF family protein	NA	NA	NA	NA
WP_011374971.1\|1256051_1256294_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_011374972.1\|1256428_1257043_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.1e-15	58.2
WP_011374973.1\|1257176_1257695_-	adenine phosphoribosyltransferase	A0A2K9L2N8	Tupanvirus	5.6e-13	32.2
WP_011374974.1\|1257718_1260031_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.8e-77	30.9
WP_011374975.1\|1260175_1261168_+	UDP-glucose 4-epimerase GalE	A0A1V0SG19	Hokovirus	1.3e-47	36.6
WP_011374976.1\|1261253_1261619_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_011374977.1\|1261635_1261962_+	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	5.4e-06	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage