CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011740	Escherichia fergusonii ATCC 35469, complete genome	5 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,PD-DExK,RT	0	17	10	0
NC_011743	Escherichia fergusonii ATCC 35469 plasmid pEFER, complete sequence	0 crisprs	WYL,csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011740_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011740_1

311193-312197

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

16 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_011740_1

>merge|NC_011740|1|311193-312197|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTTTTCGAAACCGGCACCCCCTGCGCCTCCGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGGAATAAATGATCATGACACAGCGTTGCACAATGAGTTCCCCGCGCCAGCGGGGATAAACCGGTCCTACCTGTTGGCGATTTCAGCATCATCATGAGTTCCCCGCGCCAGCGGGGATAAACCGTGATCCGGGTGTCTAACGAACTGCTGAGCGATGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGCAAAGTGGAACTCGGCGCAGAACGTTATGGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCGCCGCACCGGATTCCTGAACTAACTTCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGCTACAAAAAACCCATCAGGCAATTCAACGGCAGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGTATTTTGGTATTTTGCCTGGCGCTAAAACGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGGCGCGGATCTACAACCCTGACTGACGGGGGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTGAGCCAGCCTGGATTGTTGAGGCGCGTAAGAGTTCCCCGCGCCAGCGGGGATAAACCGGCTGAAAAATTGGGGCATGAACTGGATGTTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGACGGCGCATTTTTGAGTTCCGTGTACTGCTCGGAGTTCCCCGCGCCAGCGGGGATAAACCGGCCTTGGATACGGGCAGGGCGTCCGACTGGTCGAGTTCCCCGCGCCAGCGGGGATAAACCGAAATTTCATAACGTCAATTTCGACGGCTGCGGGAGTTCCCCACGCCAGCGGGGATAAACCGTTGGCGAGATTGTTAACGTTGCGATGTCTCAAGAGTTCCCCGCGCCAGTGAGGATAAACCGGCTTCAGATACATATACTTTAAGTGCAGCGCTGAGTTCCCAGCTCCAACACGAATAATCCG

>NC_011740|1|1|311193-312136|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAATAAATGATCATGACACAGCGTTGCACAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCTACCTGTTGGCGATTTCAGCATCATCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGATCCGGGTGTCTAACGAACTGCTGAGCGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAAAGTGGAACTCGGCGCAGAACGTTATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGCACCGGATTCCTGAACTAACTTCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTACAAAAAACCCATCAGGCAATTCAACGGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGCGCGGATCTACAACCCTGACTGACGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGAAAAATTGGGGCATGAACTGGATGTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTTGGATACGGGCAGGGCGTCCGACTGGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTTCATAACGTCAATTTCGACGGCTGCGG
GAGTTCCCCACGCCAGCGGGGATAAACCG	TTGGCGAGATTGTTAACGTTGCGATGTCTCAA
GAGTTCCCCGCGCCAGTGAGGATAAACCG

>NC_011740|1|1|311193-312197|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAATAAATGATCATGACACAGCGTTGCACAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCTACCTGTTGGCGATTTCAGCATCATCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGATCCGGGTGTCTAACGAACTGCTGAGCGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAAAGTGGAACTCGGCGCAGAACGTTATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGCACCGGATTCCTGAACTAACTTCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTACAAAAAACCCATCAGGCAATTCAACGGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGCGCGGATCTACAACCCTGACTGACGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGAAAAATTGGGGCATGAACTGGATGTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTTGGATACGGGCAGGGCGTCCGACTGGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTTCATAACGTCAATTTCGACGGCTGCGG
GAGTTCCCCACGCCAGCGGGGATAAACCG	TTGGCGAGATTGTTAACGTTGCGATGTCTCAA
GAGTTCCCCGCGCCAGTGAGGATAAACCG	GCTTCAGATACATATACTTTAAGTGCAGCGCT
GAGTTCCCAGCTCCAACACGAATAATCCG

>NC_011740|1|1|311193-312197|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAATAAATGATCATGACACAGCGTTGCACAAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCTACCTGTTGGCGATTTCAGCATCATCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGATCCGGGTGTCTAACGAACTGCTGAGCGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCAAAGTGGAACTCGGCGCAGAACGTTATG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGCACCGGATTCCTGAACTAACTTCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTACAAAAAACCCATCAGGCAATTCAACGGCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGCGCGGATCTACAACCCTGACTGACGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGAAAAATTGGGGCATGAACTGGATGTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTTGGATACGGGCAGGGCGTCCGACTGGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTTCATAACGTCAATTTCGACGGCTGCGG
GAGTTCCCCACGCCAGCGGGGATAAACCG	TTGGCGAGATTGTTAACGTTGCGATGTCTCAA
GAGTTCCCCGCGCCAGTGAGGATAAACCG	GCTTCAGATACATATACTTTAAGTGCAGCGCT
GAGTTCCCAGCTCCAACACGAATAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011740.1\|WP_000752794.1\|322815_323298_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NC_011740.1\|WP_000039850.1\|317141_317876_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011740.1\|WP_001217995.1\|307322_308471_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NC_011740.1\|WP_000108294.1\|312885_313248_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_011740.1\|WP_001003081.1\|315365_317078_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_011740.1\|WP_000944221.1\|309407_310010_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NC_011740.1\|WP_000064441.1\|323310_324402_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NC_011740.1\|WP_000547318.1\|304999_306328_-\|IS4-like-element-IS4-family-transposase	unknown	unknown	gnl\|CDD\|379017
NC_011740.1\|WP_001258267.1\|324404_325079_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_011740.1\|WP_000254732.1\|300496_300832_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NC_011740.1\|WP_000036723.1\|303646_304945_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_011740.1\|WP_001050409.1\|321314_322823_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NC_011740.1\|WP_000211943.1\|313566_315366_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_011740.1\|WP_001199973.1\|310182_310854_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_011740.1\|WP_001071671.1\|300902_301694_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_011740.1\|WP_000433148.1\|318233_320900_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_011740.1\|WP_000105745.1\|312261_312525_+\|hypothetical-protein	unknown	unknown	unknown
NC_011740.1\|WP_048814525.1\|308485_309394_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NC_011740.1\|WP_024256376.1\|306444_307317_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NC_011740.1\|WP_000210878.1\|301921_303559_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NC_011740.1\|WP_000752794.1\|322815_323298_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.48331e-31
NC_011740.1\|WP_000039850.1\|317141_317876_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137
NC_011740.1\|WP_001217995.1\|307322_308471_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.92726e-56
NC_011740.1\|WP_000108294.1\|312885_313248_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.01593e-59
NC_011740.1\|WP_001003081.1\|315365_317078_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_011740.1\|WP_000944221.1\|309407_310010_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	8.18643e-76
NC_011740.1\|WP_000064441.1\|323310_324402_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.74795e-152
NC_011740.1\|WP_001258267.1\|324404_325079_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.40172e-99
NC_011740.1\|WP_000254732.1\|300496_300832_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.32154e-73
NC_011740.1\|WP_000036723.1\|303646_304945_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_011740.1\|WP_001050409.1\|321314_322823_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NC_011740.1\|WP_000211943.1\|313566_315366_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_011740.1\|WP_001199973.1\|310182_310854_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NC_011740.1\|WP_001071671.1\|300902_301694_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.09719e-157
NC_011740.1\|WP_000433148.1\|318233_320900_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NC_011740.1\|WP_024256376.1\|306444_307317_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.12818e-101
NC_011740.1\|WP_048814525.1\|308485_309394_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.27812e-87
NC_011740.1\|WP_000547318.1\|304999_306328_-\|IS4-like-element-IS4-family-transposase	gnl\|CDD\|379017	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal. This family represents the N-terminal region of proteins carrying the transposase enzyme, DDE_Tnp_1 (that was Transposase_11), pfam01609, at the C-terminus. The full-length members are Insertion Element 4, IS4. Within the collection of E.coli strains, ECOR, the number of IS4 elements varies from zero to 14, with an average of 5 copies/strain.	1.06045e-37
NC_011740.1\|WP_000210878.1\|301921_303559_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>NC_011740.1|WP_001199973.1|310182_310854_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_011740.1|WP_000944221.1|309407_310010_-|LemA-family-protein
MLRIFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSSHEQEVLEAVTLARSQANRASSALQQTPGDEQKLQTWQQAQAQVSRTLGQLTIFSERYPELKAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKTPTIDFSQNTNAH
>NC_011740.1|WP_048814525.1|308485_309394_-|YgcG-family-protein
MRNFIFLMAFFCSSVFAIQIPVPESPRYVNDLTGKLTNDEVNTLTNQIKELTQKSHAQLVVLVVETTGDETIEQYATRVFDSWKPGDKDRDDGVLLLVAWQDQAVRIEIGYGLEGVITDAQSGKIIRNSIIPAFKNGDLAGGLQKGISDIDNRLTGNNLATITPTVHPLPFNGWWALLVWAIVLTFISARGYFKTLGLICFTAIVLAFVLPIAGFSGSWGVLATLLCFATPFLAVAIAFTPFGKKVRDSMRSANRPSHYERSNSASRRSSSSSSSSSSSSFDNDNFSGGGGSSGGGGASGRW
>NC_011740.1|WP_001217995.1|307322_308471_-|YgcG-family-protein
MRIFLLLLMLYGFQAFAEQLPSVTDLTGTLTTEEQTALNQQLQTLEQQNHFQVAVLVTPTTGGKDIKLAASQSYGLYHWKPVGEKRYGEGILILVVWPEGLASMKIGHGLEEMLPPEQAAQIVHYHMQPEFKKNNLFSGLTQGIEGIAQFTYIKANLSPLDALANHLFANPQRSLPCLAWTLLIIVAIVVLWRFTTHPGPGIWMISMITPMVWFFCFQDDVIIRRVSVVCFSLFFAATCWQRLAVIFHMCRVFPMMLAPKNKNAKVKKQKTTQQVSQSERNSLFVVLLIIVVGWCLVFASNKDIAFISTIIGLIDHFIGPITIAGIVLLIIVAKFTGNLKLGSGHKSNRKTGNRNAHSRSSSKNSFRGGGGSSGGGGSSDRW
>NC_011740.1|WP_024256376.1|306444_307317_-|YgcG-family-protein
MRIILFLLTLWCLPVLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITQKTRAQVAVLIVPSTGDDSIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGNIIRSIMIPAFKKQKLAKGLELAIIALNNQLTSQHQYSSNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGNNFCRAFKSSVCISTVYLIDLFLFSDKTFSIAVFSFFFAFTIIMVFTWLCVPQKKASGRSYHSDSGGSGGGSSGGGFSGGGGSSGGGGASGRW
>NC_011740.1|WP_000547318.1|304999_306328_-|IS4-like-element-IS4-family-transposase
MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPQWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHQKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA
>NC_011740.1|WP_000036723.1|303646_304945_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_011740.1|WP_000210878.1|301921_303559_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NC_011740.1|WP_001071671.1|300902_301694_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDELRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAGSSAENSNEVLARWEEIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NC_011740.1|WP_000254732.1|300496_300832_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSDQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NC_011740.1|WP_000105745.1|312261_312525_+|hypothetical-protein
MSTLMEKECLLNGVSQNIAFLSKLSEMVYNSQNEELQHEIYELVSYKDYLYSTGHELVDFQEGVLRFQKIRIKYRQELKELGYPVGN
>NC_011740.1|WP_000108294.1|312885_313248_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NC_011740.1|WP_000211943.1|313566_315366_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALTATPAPAAEMPGITIISASQTGNARRVAETLRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKSKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NC_011740.1|WP_001003081.1|315365_317078_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MNEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMHKENITEPEILATLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NC_011740.1|WP_000039850.1|317141_317876_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011740.1|WP_000433148.1|318233_320900_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNAFCRNEMLSKQKVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTDTFLFKEDAPSGIQALRKYFQDRQQDACRVLELSGLVSNKRSYDGVHALLDNGYQPRQLQVLVDALPTAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRIEANASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGGVILLSATLPMKQKQKLLDTYGLHTDPEENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQLEPIYLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISDFGKNGERNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVFEHLSHEQQYEALALNRVNVPSTWKRSFSEVVDEDGLLWLEGKQNQDGWIWQGNSIVIIYTREEGMTRAIPANPK
>NC_011740.1|WP_001050409.1|321314_322823_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGKVQILNLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQRLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVCGIDLRSTVLLNVLTIPRLQKQFPNESNTENQPTWIKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDMLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFVEGIKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NC_011740.1|WP_000752794.1|322815_323298_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDDLRDIPAFYRLVQPFGWEKLRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLAHAEPVLDWSLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NC_011740.1|WP_000064441.1|323310_324402_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFEQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKILKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATNVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NC_011740.1|WP_001258267.1|324404_325079_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGLPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQVLSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVAIWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTQPLFLGTCQASDPQKALLNYEPVGGDIYSEESVDGHHLKFTVRDEPMITLPRQFASREWYVIKGGMDVSQ

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Crispr_ID: NC_011740_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011740_2

326990-328178

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

19 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_011740_2

>merge|NC_011740|2|326990-328178|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTGATCCGGGTGTCTAACGAACTGCTGAGCGATGAGTTCCCCGCGCCAGCGGGGATAAACCGAATCAATAAAACAATTTAGAAATATAATGGGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGCAATGCGTCGTGCGGATTCTCACGTCATTCCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCTGTTGAAACAGATATTCCCTACGCGCTGGTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGGCCGCAGTTGTACTCTTGGTGCTGCTTCCTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCCTGAAATCATCGTTCTGTAGTTGTCTAGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCTATCAGAATTGGCGGTGAACTTTTATTTGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCAGCAGATGCAGGCAGCACAGCAGCAGCAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTCTCTCATCTGGTCAGGCATTGGCCCTTGCATGAGTTCCCCGCGCCAGCGGGGATAAACCGGTCACTTCGTTTTTATCAACGGCCAGCACGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCATGCATTGCTCAGCCAGTTTTATGGCAGCCCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGGTTATCACAGAGCTGAAACAGAACTGGAAAAGAGTTCCCCGCGCCAGCGGGGATAAACCGGCAAACAGAACGGGCACGTAAAATGGAATGACGAGTTCCCCGCGCCAGCGGGGATAAACCGGTTTACATGCAGGCGCTGGTCACGTGGGCTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGTAATAGCCGCCCTCTTTCTGATTCTCTTCAACGAGTTCCCCGCGCCAGCGGGGATAAACCGGCTGTAAACCTTGCTGTAAAAGGCCATCGTTTGAGTTCCCCGCGCCAGCGGGGATAAACCGGATGGCTGTCATAAAAATTTCTCCGCTATTTGGAGTTCCCCGCGCCAGCGGGGATAAACCGCATTACGTAAAAGCGTAGAAGGCGAAAATCACGAGTTCCCCGCGCCAGCAGGGATAAATCGGCAACGACGGTGAGATTTCACGCCTGACGCTGGTGTTCCCCGCATCAGCGGGGATAAACCG

>NC_011740|2|2|326990-328056|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGATCCGGGTGTCTAACGAACTGCTGAGCGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATCAATAAAACAATTTAGAAATATAATGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAATGCGTCGTGCGGATTCTCACGTCATTCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGTTGAAACAGATATTCCCTACGCGCTGGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGCCGCAGTTGTACTCTTGGTGCTGCTTCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTGAAATCATCGTTCTGTAGTTGTCTAGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTATCAGAATTGGCGGTGAACTTTTATTTGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGCAGATGCAGGCAGCACAGCAGCAGCAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTCATCTGGTCAGGCATTGGCCCTTGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACTTCGTTTTTATCAACGGCCAGCACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGCATTGCTCAGCCAGTTTTATGGCAGCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTTATCACAGAGCTGAAACAGAACTGGAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGAACGGGCACGTAAAATGGAATGAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACATGCAGGCGCTGGTCACGTGGGCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAATAGCCGCCCTCTTTCTGATTCTCTTCAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATGGCTGTCATAAAAATTTCTCCGCTATTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NC_011740|2|2|326990-328178|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGATCCGGGTGTCTAACGAACTGCTGAGCGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATCAATAAAACAATTTAGAAATATAATGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAATGCGTCGTGCGGATTCTCACGTCATTCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGTTGAAACAGATATTCCCTACGCGCTGGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGCCGCAGTTGTACTCTTGGTGCTGCTTCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTGAAATCATCGTTCTGTAGTTGTCTAGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTATCAGAATTGGCGGTGAACTTTTATTTGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGCAGATGCAGGCAGCACAGCAGCAGCAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTCATCTGGTCAGGCATTGGCCCTTGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACTTCGTTTTTATCAACGGCCAGCACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGCATTGCTCAGCCAGTTTTATGGCAGCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTTATCACAGAGCTGAAACAGAACTGGAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGAACGGGCACGTAAAATGGAATGAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACATGCAGGCGCTGGTCACGTGGGCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAATAGCCGCCCTCTTTCTGATTCTCTTCAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATGGCTGTCATAAAAATTTCTCCGCTATTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTACGTAAAAGCGTAGAAGGCGAAAATCAC
GAGTTCCCCGCGCCAGCAGGGATAAATCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

>NC_011740|2|2|326990-328178|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGATCCGGGTGTCTAACGAACTGCTGAGCGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AATCAATAAAACAATTTAGAAATATAATGGGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAATGCGTCGTGCGGATTCTCACGTCATTCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGTTGAAACAGATATTCCCTACGCGCTGGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGCCGCAGTTGTACTCTTGGTGCTGCTTCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCTGAAATCATCGTTCTGTAGTTGTCTAGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCTATCAGAATTGGCGGTGAACTTTTATTTGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGCAGATGCAGGCAGCACAGCAGCAGCAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTCATCTGGTCAGGCATTGGCCCTTGCAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACTTCGTTTTTATCAACGGCCAGCACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATGCATTGCTCAGCCAGTTTTATGGCAGCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTTATCACAGAGCTGAAACAGAACTGGAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACAGAACGGGCACGTAAAATGGAATGAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACATGCAGGCGCTGGTCACGTGGGCTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAATAGCCGCCCTCTTTCTGATTCTCTTCAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GATGGCTGTCATAAAAATTTCTCCGCTATTTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTACGTAAAAGCGTAGAAGGCGAAAATCAC
GAGTTCCCCGCGCCAGCAGGGATAAATCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011740.1\|WP_012599884.1\|326599_326884_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_011740.1\|WP_000741662.1\|333368_334079_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_011740.1\|WP_000752794.1\|322815_323298_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NC_011740.1\|WP_001219242.1\|334078_334558_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_011740.1\|WP_001003081.1\|315365_317078_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_011740.1\|WP_000490452.1\|328259_329297_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_011740.1\|WP_001050409.1\|321314_322823_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NC_011740.1\|WP_000372392.1\|329548_330457_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_011740.1\|WP_000064441.1\|323310_324402_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NC_011740.1\|WP_001173682.1\|331885_332491_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_011740.1\|WP_001258267.1\|324404_325079_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_011740.1\|WP_001098966.1\|330458_331886_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_011740.1\|WP_001221544.1\|335584_336346_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_011740.1\|WP_000281395.1\|325065_325665_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_011740.1\|WP_000433148.1\|318233_320900_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_011740.1\|WP_000220067.1\|325680_326598_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011740.1\|WP_000517469.1\|333038_333350_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_011740.1\|WP_000039850.1\|317141_317876_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011740.1\|WP_000568909.1\|334554_335604_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_011740.1\|WP_001246060.1\|332540_332864_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891

Protein	Function_ID	Function_description	E-value
NC_011740.1\|WP_012599884.1\|326599_326884_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.05725e-61
NC_011740.1\|WP_000741662.1\|333368_334079_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	6.72692e-122
NC_011740.1\|WP_000752794.1\|322815_323298_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	5.48331e-31
NC_011740.1\|WP_001219242.1\|334078_334558_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NC_011740.1\|WP_001003081.1\|315365_317078_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_011740.1\|WP_000490452.1\|328259_329297_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_011740.1\|WP_001050409.1\|321314_322823_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NC_011740.1\|WP_000372392.1\|329548_330457_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_011740.1\|WP_000064441.1\|323310_324402_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.74795e-152
NC_011740.1\|WP_001173682.1\|331885_332491_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	5.35432e-148
NC_011740.1\|WP_001258267.1\|324404_325079_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.40172e-99
NC_011740.1\|WP_001098966.1\|330458_331886_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_011740.1\|WP_001221544.1\|335584_336346_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	2.87824e-150
NC_011740.1\|WP_000281395.1\|325065_325665_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.98387e-100
NC_011740.1\|WP_000433148.1\|318233_320900_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NC_011740.1\|WP_000220067.1\|325680_326598_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.34057e-159
NC_011740.1\|WP_000517469.1\|333038_333350_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.1114e-62
NC_011740.1\|WP_000039850.1\|317141_317876_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137
NC_011740.1\|WP_000568909.1\|334554_335604_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_011740.1\|WP_001246060.1\|332540_332864_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	5.35907e-46

>NC_011740.1|WP_012599884.1|326599_326884_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSILVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>NC_011740.1|WP_000220067.1|325680_326598_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTVNQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NC_011740.1|WP_000281395.1|325065_325665_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKIIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGEGKNGKIQTVCFEGVLTINDAPALIDLLQQGIGPAKSMGCGLLSLAPL
>NC_011740.1|WP_001258267.1|324404_325079_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGLPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQVLSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVAIWLTPQATMVMSELEKAVLKPRYTPYLGRRSCPLTQPLFLGTCQASDPQKALLNYEPVGGDIYSEESVDGHHLKFTVRDEPMITLPRQFASREWYVIKGGMDVSQ
>NC_011740.1|WP_000064441.1|323310_324402_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFEQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKILKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATNVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NC_011740.1|WP_000752794.1|322815_323298_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDDLRDIPAFYRLVQPFGWEKLRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLAHAEPVLDWSLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NC_011740.1|WP_001050409.1|321314_322823_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGKVQILNLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQRLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVCGIDLRSTVLLNVLTIPRLQKQFPNESNTENQPTWIKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDMLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFVEGIKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NC_011740.1|WP_000433148.1|318233_320900_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNAFCRNEMLSKQKVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTDTFLFKEDAPSGIQALRKYFQDRQQDACRVLELSGLVSNKRSYDGVHALLDNGYQPRQLQVLVDALPTAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRIEANASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGGVILLSATLPMKQKQKLLDTYGLHTDPEENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQLEPIYLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISDFGKNGERNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVFEHLSHEQQYEALALNRVNVPSTWKRSFSEVVDEDGLLWLEGKQNQDGWIWQGNSIVIIYTREEGMTRAIPANPK
>NC_011740.1|WP_000039850.1|317141_317876_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011740.1|WP_001003081.1|315365_317078_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MNEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMHKENITEPEILATLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NC_011740.1|WP_000490452.1|328259_329297_-|aminopeptidase
MFSALRHRTAALALGVCFILPVQAATVRPGDIANTQTRHLATFFPGRMTGTPAEMLSADYINQQFQQMGYRSDIRTFNSRYIFTDKNKRKSWHNVTGSTVIAAHEGKVPQQIIIMAHLDTYAPQSDADIDANLGGLTLQGVDDNAAGLGVMLELAERLKDIPTEYGIRFIATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARNHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVETTNWNLGNKDGYQQRSKTPAFPMGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NC_011740.1|WP_000372392.1|329548_330457_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NC_011740.1|WP_001098966.1|330458_331886_+|sulfate-adenylyltransferase-subunit-CysN
MNTVLAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLIVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMLWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVQVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEVLPAVQSASVAVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLSLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAASEFSAFELELNALVRRHFPHWGARDLLGDK
>NC_011740.1|WP_001173682.1|331885_332491_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEINLNGEQLVTNLVQQLLDLLRQNDIIRS
>NC_011740.1|WP_001246060.1|332540_332864_+|DUF3561-family-protein
MRNSDNITFTKSEAFAVDDETTWSLSGAAVGFVSWLFALAIPFLVYGPNTLFFFLYTWPFFLALMPVAVVAGIALHSLTGGKLLYTILLTLLIVGVMFGALFLWLLG
>NC_011740.1|WP_000517469.1|333038_333350_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYSRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTKPGETFYRLVPDASKRAQTAGQNNR
>NC_011740.1|WP_000741662.1|333368_334079_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATNIDVCAVVPAAGYGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVIIVISPGDSRFAQLPLANHPQITVVDGGEERADSVLAGIKAVGDAEWVLVHDAARPCLHQDDLARLLTLSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRSGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NC_011740.1|WP_001219242.1|334078_334558_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NC_011740.1|WP_000568909.1|334554_335604_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWFCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLRDVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAEETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGEYAHIAE
>NC_011740.1|WP_001221544.1|335584_336346_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGSRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPDTDFAAVDEGYVSITPLHVDLTAHNAQDVVSDWLNSVGVGTQW

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Crispr_ID: NC_011740_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011740_3

1059916-1060065

Orphan

I-F

Consensus_repeat	Method
GAGTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_011740_3

>merge|NC_011740|3|1059916-1060065|CRISPRCasFinder
GAGTTCACTGCCGTACAGGCAGCTTAGAAAAATGGTGAATATGGCAGAAAAGCCCTTTGCGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACTGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGGCAGATAAAATG

>NC_011740|3|3|1059916-1060065|CRISPRCasFinder
GAGTTCACTGCCGTACAGGCAGCTTAGAAA	AATGGTGAATATGGCAGAAAAGCCCTTTGC
GAGTTCACTGCCGTACAGGCAGCTTAGAAA	TTCACTGGTAACATACTCCACCCGCCCACC
ATGTTCACTGCCGTACAGGCAGATAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011740.1\|WP_000047741.1\|1057074_1057395_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_011740.1\|WP_002431630.1\|1052139_1053090_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NC_011740.1\|WP_001241696.1\|1060952_1061657_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NC_011740.1\|WP_001043632.1\|1063420_1065187_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NC_011740.1\|WP_000067755.1\|1072062_1073406_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NC_011740.1\|WP_000076980.1\|1067436_1071282_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NC_011740.1\|WP_000934073.1\|1057425_1059705_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NC_011740.1\|WP_000599778.1\|1050484_1052143_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NC_011740.1\|WP_001040187.1\|1060449_1060668_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NC_011740.1\|WP_000488716.1\|1049367_1050063_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NC_011740.1\|WP_001242896.1\|1053251_1054367_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NC_011740.1\|WP_000410783.1\|1056530_1056752_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NC_011740.1\|WP_000868863.1\|1047824_1048850_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NC_011740.1\|WP_000537409.1\|1065309_1066275_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NC_011740.1\|WP_000886674.1\|1073496_1074789_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NC_011740.1\|WP_000228473.1\|1066807_1067302_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NC_011740.1\|WP_000188205.1\|1054363_1056310_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NC_011740.1\|WP_001295343.1\|1071440_1072052_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NC_011740.1\|WP_001202152.1\|1061698_1063420_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NC_011740.1\|WP_000491145.1\|1046586_1047486_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287

Protein	Function_ID	Function_description	E-value
NC_011740.1\|WP_000047741.1\|1057074_1057395_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	5.73364e-49
NC_011740.1\|WP_002431630.1\|1052139_1053090_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	9.48386e-123
NC_011740.1\|WP_001241696.1\|1060952_1061657_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.4794e-138
NC_011740.1\|WP_001043632.1\|1063420_1065187_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_011740.1\|WP_000067755.1\|1072062_1073406_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_011740.1\|WP_000076980.1\|1067436_1071282_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NC_011740.1\|WP_000934073.1\|1057425_1059705_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NC_011740.1\|WP_000599778.1\|1050484_1052143_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NC_011740.1\|WP_001040187.1\|1060449_1060668_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NC_011740.1\|WP_000488716.1\|1049367_1050063_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NC_011740.1\|WP_001242896.1\|1053251_1054367_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NC_011740.1\|WP_000410783.1\|1056530_1056752_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	7.06328e-45
NC_011740.1\|WP_000868863.1\|1047824_1048850_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.311e-46
NC_011740.1\|WP_000537409.1\|1065309_1066275_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NC_011740.1\|WP_000886674.1\|1073496_1074789_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NC_011740.1\|WP_000228473.1\|1066807_1067302_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NC_011740.1\|WP_000188205.1\|1054363_1056310_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NC_011740.1\|WP_001295343.1\|1071440_1072052_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NC_011740.1\|WP_001202152.1\|1061698_1063420_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_011740.1\|WP_000491145.1\|1046586_1047486_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.08463e-118

>NC_011740.1|WP_000934073.1|1057425_1059705_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSSDSASQPGSEEQTGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKPEAAH
>NC_011740.1|WP_000047741.1|1057074_1057395_+|ATP-dependent-Clp-protease-adapter-ClpS
MSKTNDWLDFDQLAEDKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYQGKAICGVFTAEVAETKVAMVNNYARENEHPLLCTLEKA
>NC_011740.1|WP_000410783.1|1056530_1056752_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIKMDGYRTLKAGQPVQFDVTQGPKGNHASVIVPYEAEAIA
>NC_011740.1|WP_000188205.1|1054363_1056310_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELSNIRRSFPSGEDVVEVLKGINLTINAGEMVAIVGASGSGKSTLMNILGCLDKPTSGIYKVAGQDVSTLDSDSLAQLRREHFGFIFQRYHLLSHLTALQNVEVPAVYAGIERKQREARAQALLQRLGLGERVDYRPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRERGHTVIIVTHDPHVAAQAERVIEIRDGEIVSNPPAKNSAIAQTFSDSSAQPRSGWRQFIAGFREALTMAWLALATNKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDIYPGKDFGDDDPQYQQALKYDDLAAIQKQSWVASATPAVSQNVRLRYGNIDVAAAANGVSGDYFNVYGMTFSEGNTFNKEQLNARAQVVVLDNNTRRQLFPHKANVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTMASRVMGQSWLNSITVRVKEGYDSAQAEQQLTRLMTLRHGKKDFFTWNMDGILKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVMVCLIGGALGICLSLLIAFTLQLFLPGWEIGFSPVALLTAFLCSTITGILFGWLPARNASRLDPVEALARE
>NC_011740.1|WP_001242896.1|1053251_1054367_+|macrolide-transporter-subunit-MacA
MRMRERFKKRYLIAAIVILGGLMVLWKTLNAPEPKYQTLIVRPGELQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGIIDPEQAQNQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQKLAQTQAISQQDLDTAVTELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGRIKDVLPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLAEVKNVLTIPLSALGDPVGDNRYKVTLLRNGETREREVVIGARNDTDVEIVKGLEAGDEVVIGEGNPGAAK
>NC_011740.1|WP_002431630.1|1052139_1053090_-|DUF535-domain-containing-protein
MSQLTENTFSPGKSLNSRTLFFRLASGELRPGKFWHRRKFRQKFLLRSLLMPRLSIEWMNELCQMPHINALLVRQPRLPVRLHRPYLTVSFNRQQLLAALRYHYALLRNVMSAEEFNCYLNTPGLQLAQLEGKNGERYTLELTMMISMDKEGDSTILLRNDEGIPLAEITFTLCEYQGKRTLFIGGLQGAKPEIPHQAIQDATKACSGLFPKRLVLEAACRLANRLRVEQILAVSNETHIYRSLRYRDKDEKIHADYNAFWAAVGGECDKQHFYHIPAKIPRKDMAEIASKKRAEYRRRYLLLDTIEEQMSMLFHA
>NC_011740.1|WP_000599778.1|1050484_1052143_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFDRDDFWFPPGDVGGREHHLQIILTFRESLPGRHRVRRYQPLAECWTPCRDGYHRVFYRLEGESHDDGSVMTLRSFLDGDGHPLAIADINEQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARELDYLARELATRPQNLTDAQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRGNNDQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTIRLDRDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRITTTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDRDAEHEHLTALPALDMEHFMYRQGFSDVFHRVAQIPQNVPMNMRKIISKAIHRSSKPDLAIEVAMEAGRRGVDAVPVLFKKMFSRVVWLARGRAD
>NC_011740.1|WP_000488716.1|1049367_1050063_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NC_011740.1|WP_000868863.1|1047824_1048850_+|IS110-family-transposase
MKVSTLGIDLAKNVFQLHGVDHEGHTILRKKLTRAKFVQFVIQLEPCLIGMEACSSSHYFARLFTRYGHEVKLIPPQYVKPYVKTNKTDAADAEAICEAVTRPNMRFVQIKTEEQQAVLALHTERGILIRERIACANSLRATLAEFGITIAAGQSHLTRELPAILEDGENGLSPFVRTSIYRQSKHIRELEEQVKQVEEALASWYRTQEACQRMAKIPGVGMLTATYVVAAVGNARQFSTAKQFASWLGLTPKEHSSGGKQQLGGISKRGDGYFRYLLVHGARALTAWVNRNGAVEENSWLQGLLERKHYNVAVVAMAAKTARIMWSMLSHNTEYQPRQLA
>NC_011740.1|WP_000491145.1|1046586_1047486_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIVALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLGFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELLAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NC_011740.1|WP_001040187.1|1060449_1060668_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NC_011740.1|WP_001241696.1|1060952_1061657_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPTRLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWRKDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NC_011740.1|WP_001202152.1|1061698_1063420_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAILTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNTQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADCVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHMAILGRTGCGKSTLLQLLTRAWDPQQGEILINDSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEVLAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NC_011740.1|WP_001043632.1|1063420_1065187_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMESIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELTSTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVNEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVANGPFATLLAHRQEEI
>NC_011740.1|WP_000537409.1|1065309_1066275_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDHISKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDSLADAK
>NC_011740.1|WP_000228473.1|1066807_1067302_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NC_011740.1|WP_000076980.1|1067436_1071282_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLKPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNLLTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKKHESRRARILRGALARRKRLADKFINPVGRHTDTALFSGKRMDDEEEITYTARGIAADPDDVLFSGNRATQPEYDEYDPLLNGTPITEPVAQAAAATTATQSLAASVEPTNQIPPVTATGISPAQPDIDWQPVPGPQTGEPVIATTPDGYPQQPQYAQPAVHYNEPPQPTAPVQQPYYASAPEQSVAENSWQAEPQQSAYAPHSTYQAEQTSQVEQNYQPDVGHVAPHPDVGLQPTSDETKPSRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPQPIKPASVAPVSSSVLPVEPAVAVTSLASGVKKATLATGEAATVAAPIFSLANSGAPRPQVKEGIGPQLPRPKRVRVPTRRELASYGIKLPSQRAAEEKAREAQRRQYEGNEQYSDDEIDAMQQDELARQFAQTQQQRYGEQYQHDSADNQQDEDVAAEAELARQFAQTQQQRYSGEQPAGANPFTLDDFEFSPMKVLLDDGPHEPLFTPSVEPEPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQSVSQPQDTLLHPLLMRNGDNRPLQKPTTPLPSLDLLAPPPSEVEPVDTFALEQMARLVEARLADFRIKAEVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFLDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMEKRYKRMSALGVRNLAGYNEKIAEAAQMGRPIPDPFWKPGDSMDVEHPVLTKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTIPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NC_011740.1|WP_001295343.1|1071440_1072052_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NC_011740.1|WP_000067755.1|1072062_1073406_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NC_011740.1|WP_000886674.1|1073496_1074789_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALAQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: NC_011740_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011740_4

1069604-1069706

Orphan

Consensus_repeat	Method
AACCTGTAGCGCCGCAACAGCAGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011740_4

>merge|NC_011740|4|1069604-1069706|CRISPRCasFinder
AACCTGTAGCGCCGCAACAGCAGTACCAGCAGCCACAGCAACCTGTAGCGCCGCAACAGCAGTACCAACAGCCACAGCAACCTGTAGCGCCGCAGCAGCAGTA

>NC_011740|4|4|1069604-1069706|CRISPRCasFinder
AACCTGTAGCGCCGCAACAGCAGTA	CCAGCAGCCACAGCAACCTGTAGCGCCGCAACAGCAGTACCAACAGCCACAGC
AACCTGTAGCGCCGCAGCAGCAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011740.1\|WP_000047741.1\|1057074_1057395_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_011740.1\|WP_000113473.1\|1077141_1078572_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NC_011740.1\|WP_001043632.1\|1063420_1065187_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NC_011740.1\|WP_000067755.1\|1072062_1073406_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NC_011740.1\|WP_000934073.1\|1057425_1059705_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NC_011740.1\|WP_001202152.1\|1061698_1063420_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NC_011740.1\|WP_000111043.1\|1078781_1079522_-\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NC_011740.1\|WP_000029922.1\|1075785_1076934_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NC_011740.1\|WP_000537409.1\|1065309_1066275_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NC_011740.1\|WP_000410783.1\|1056530_1056752_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NC_011740.1\|WP_001040187.1\|1060449_1060668_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NC_011740.1\|WP_000886674.1\|1073496_1074789_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NC_011740.1\|WP_001292805.1\|1079714_1081997_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NC_011740.1\|WP_000198078.1\|1074846_1075473_-\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NC_011740.1\|WP_000228473.1\|1066807_1067302_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NC_011740.1\|WP_001241696.1\|1060952_1061657_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NC_011740.1\|WP_001295343.1\|1071440_1072052_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NC_011740.1\|WP_015953311.1\|1083314_1085075_-\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	unknown	unknown	gnl\|CDD\|132588
NC_011740.1\|WP_002431623.1\|1082052_1082910_-\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|182746
NC_011740.1\|WP_000188205.1\|1054363_1056310_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528

Protein	Function_ID	Function_description	E-value
NC_011740.1\|WP_000047741.1\|1057074_1057395_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	5.73364e-49
NC_011740.1\|WP_000113473.1\|1077141_1078572_+\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	2.87592e-39
NC_011740.1\|WP_001043632.1\|1063420_1065187_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_011740.1\|WP_000067755.1\|1072062_1073406_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_011740.1\|WP_000934073.1\|1057425_1059705_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NC_011740.1\|WP_001202152.1\|1061698_1063420_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_011740.1\|WP_000111043.1\|1078781_1079522_-\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NC_011740.1\|WP_000029922.1\|1075785_1076934_+\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NC_011740.1\|WP_000537409.1\|1065309_1066275_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NC_011740.1\|WP_000410783.1\|1056530_1056752_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	7.06328e-45
NC_011740.1\|WP_001040187.1\|1060449_1060668_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NC_011740.1\|WP_000886674.1\|1073496_1074789_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NC_011740.1\|WP_001292805.1\|1079714_1081997_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NC_011740.1\|WP_000198078.1\|1074846_1075473_-\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	5.838e-71
NC_011740.1\|WP_000228473.1\|1066807_1067302_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NC_011740.1\|WP_001241696.1\|1060952_1061657_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.4794e-138
NC_011740.1\|WP_001295343.1\|1071440_1072052_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NC_011740.1\|WP_015953311.1\|1083314_1085075_-\|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0
NC_011740.1\|WP_002431623.1\|1082052_1082910_-\|formate-transporter-FocA	gnl\|CDD\|182746	PRK10805, PRK10805, formate transporter; Provisional.	0
NC_011740.1\|WP_000188205.1\|1054363_1056310_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0

>NC_011740.1|WP_000228473.1|1066807_1067302_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NC_011740.1|WP_000537409.1|1065309_1066275_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDHISKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDSLADAK
>NC_011740.1|WP_001043632.1|1063420_1065187_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMESIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELTSTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVNEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVANGPFATLLAHRQEEI
>NC_011740.1|WP_001202152.1|1061698_1063420_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAILTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNTQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADCVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHMAILGRTGCGKSTLLQLLTRAWDPQQGEILINDSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEVLAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NC_011740.1|WP_001241696.1|1060952_1061657_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPTRLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWRKDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NC_011740.1|WP_001040187.1|1060449_1060668_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NC_011740.1|WP_000934073.1|1057425_1059705_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSSDSASQPGSEEQTGGEDRMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIDETVQIINGLKPKYEAHHDVRYTAKAIRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKSLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKPEAAH
>NC_011740.1|WP_000047741.1|1057074_1057395_+|ATP-dependent-Clp-protease-adapter-ClpS
MSKTNDWLDFDQLAEDKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYQGKAICGVFTAEVAETKVAMVNNYARENEHPLLCTLEKA
>NC_011740.1|WP_000410783.1|1056530_1056752_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIKMDGYRTLKAGQPVQFDVTQGPKGNHASVIVPYEAEAIA
>NC_011740.1|WP_000188205.1|1054363_1056310_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELSNIRRSFPSGEDVVEVLKGINLTINAGEMVAIVGASGSGKSTLMNILGCLDKPTSGIYKVAGQDVSTLDSDSLAQLRREHFGFIFQRYHLLSHLTALQNVEVPAVYAGIERKQREARAQALLQRLGLGERVDYRPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRERGHTVIIVTHDPHVAAQAERVIEIRDGEIVSNPPAKNSAIAQTFSDSSAQPRSGWRQFIAGFREALTMAWLALATNKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDIYPGKDFGDDDPQYQQALKYDDLAAIQKQSWVASATPAVSQNVRLRYGNIDVAAAANGVSGDYFNVYGMTFSEGNTFNKEQLNARAQVVVLDNNTRRQLFPHKANVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTMASRVMGQSWLNSITVRVKEGYDSAQAEQQLTRLMTLRHGKKDFFTWNMDGILKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVMVCLIGGALGICLSLLIAFTLQLFLPGWEIGFSPVALLTAFLCSTITGILFGWLPARNASRLDPVEALARE
>NC_011740.1|WP_001295343.1|1071440_1072052_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NC_011740.1|WP_000067755.1|1072062_1073406_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NC_011740.1|WP_000886674.1|1073496_1074789_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALAQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NC_011740.1|WP_000198078.1|1074846_1075473_-|hydrolase
MTRPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFKLPTILTTSFETGPNGPLVPELKAQFPDAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRDWRNDIEGLATLFSNHIPDYRNLMTSYDTLTKQK
>NC_011740.1|WP_000029922.1|1075785_1076934_+|MFS-transporter
MSIYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAHEHLPTWQVGMVSSSYFTGNLVGTLLTGYLIKRLGFNRSYYLASLVFAAGCLGLGLMIGFWSWMAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMIYYVGTFLGQLLVSKVSTELMNVLPWVTALILAGILPLLFTRILSQQTESRKTTSITSMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGISNSNIGFWMAVLVSAGIVGQWPIGRLADKFGRLLVLRVQIFVVILGSIAMLTHTAMAPALFILGAAGFTLYPVAMAWSCEKVSQDQLVAMNQALLLSYTIGSLLGPSFTAMLMQHYSDNLLFIMIASVSFIYLLMLLRNARHTSNPVAHV
>NC_011740.1|WP_000113473.1|1077141_1078572_+|amino-acid-permease
MARNGQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWLFIFILYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQTILIALGWAVKGDGSLIKEYSVVVLQGLTLVLFVFFMWVASRGMKSLKTVGSIAGIAMFVMSLLYVAMAVAAPAITEVHIATTNITSETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTCNPGKEFPKGMLCLAAMVAVCAILGSLAMGMMFDSRHIPDDLMTNGQYYAFQKLGEYYNMGNSLMVIYAIANTLGHVAALVFSIDAPLKVLLGDADRKYIPARLCRTNDSGTPVNGYILTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNRWLAMIVGIWCFAFTAFACLTGIFPKMEAFTTEWTFQLALNIATPFVLVGLGLIFPLLARKANSE
>NC_011740.1|WP_000111043.1|1078781_1079522_-|pyruvate-formate-lyase-1-activating-protein
MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMF
>NC_011740.1|WP_001292805.1|1079714_1081997_-|formate-C-acetyltransferase
MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATDATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKALEKIVGLQTEAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKYAQFTSLQADLENGVNLEATIRLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM
>NC_011740.1|WP_002431623.1|1082052_1082910_-|formate-transporter-FocA
MKADNPFDLILPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGAGAMPYGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFGNLIGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKMHHTFIEAVALGILANLMVCLAVWMSYSGRSLMDKSFIMILPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAIGSSPENFSHLTVMGFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRDNDHH
>NC_011740.1|WP_015953311.1|1083314_1085075_-|30S-ribosomal-protein-S12-methylthiotransferase-accessory-protein-YcaO
MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTEEEFATLMAIFNNEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLGLATGPDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFIRMYGAEAVEAASAAMSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAKATFWTK

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Crispr_ID: NC_011740_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011740_5

1416779-1416902

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011740_5

>merge|NC_011740|5|1416779-1416902|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NC_011740|5|5|1416779-1416902|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011740.1\|WP_000098871.1\|1419339_1420488_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NC_011740.1\|WP_000190995.1\|1423025_1424051_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NC_011740.1\|WP_000948890.1\|1407005_1407752_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|181965
NC_011740.1\|WP_000843205.1\|1411847_1412084_-\|murein-lipoprotein-Lpp	unknown	unknown	gnl\|CDD\|185294
NC_011740.1\|WP_000817108.1\|1410792_1411794_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NC_011740.1\|WP_001174929.1\|1417060_1418434_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NC_011740.1\|WP_000212672.1\|1416337_1416643_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NC_011740.1\|WP_000007279.1\|1425816_1426398_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NC_011740.1\|WP_000751455.1\|1412392_1413805_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NC_011740.1\|WP_000101158.1\|1426603_1427443_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NC_011740.1\|WP_000493936.1\|1418651_1419299_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NC_011740.1\|WP_000701020.1\|1424604_1425771_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_011740.1\|WP_000907953.1\|1407726_1408998_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|236804
NC_011740.1\|WP_001252600.1\|1414566_1416177_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NC_011740.1\|WP_000279739.1\|1410227_1410644_+\|cysteine-desulfuration-protein-SufE	unknown	unknown	gnl\|CDD\|181767
NC_011740.1\|WP_000269508.1\|1422096_1423029_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NC_011740.1\|WP_001182330.1\|1420777_1421983_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NC_011740.1\|WP_000144590.1\|1408994_1410215_+\|cysteine-desulfurase-SufS	unknown	unknown	gnl\|CDD\|181766
NC_011740.1\|WP_000528120.1\|1414318_1414528_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NC_011740.1\|WP_046077524.1\|1424347_1424437_+\|YnhF-family-membrane-protein	unknown	unknown	gnl\|CDD\|341227

Protein	Function_ID	Function_description	E-value
NC_011740.1\|WP_000098871.1\|1419339_1420488_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NC_011740.1\|WP_000190995.1\|1423025_1424051_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NC_011740.1\|WP_000948890.1\|1407005_1407752_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|181965	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.	0
NC_011740.1\|WP_000843205.1\|1411847_1412084_-\|murein-lipoprotein-Lpp	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	3.04582e-36
NC_011740.1\|WP_000817108.1\|1410792_1411794_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	2.1386e-85
NC_011740.1\|WP_001174929.1\|1417060_1418434_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NC_011740.1\|WP_000212672.1\|1416337_1416643_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	2.06435e-62
NC_011740.1\|WP_000007279.1\|1425816_1426398_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	5.23446e-137
NC_011740.1\|WP_000751455.1\|1412392_1413805_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NC_011740.1\|WP_000101158.1\|1426603_1427443_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.62236e-45
NC_011740.1\|WP_000493936.1\|1418651_1419299_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.14492e-124
NC_011740.1\|WP_000701020.1\|1424604_1425771_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.57646e-98
NC_011740.1\|WP_000907953.1\|1407726_1408998_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|236804	PRK10948, PRK10948, Fe-S cluster assembly protein SufD.	0
NC_011740.1\|WP_001252600.1\|1414566_1416177_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NC_011740.1\|WP_000279739.1\|1410227_1410644_+\|cysteine-desulfuration-protein-SufE	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	9.17104e-103
NC_011740.1\|WP_000269508.1\|1422096_1423029_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NC_011740.1\|WP_001182330.1\|1420777_1421983_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NC_011740.1\|WP_000144590.1\|1408994_1410215_+\|cysteine-desulfurase-SufS	gnl\|CDD\|181766	PRK09295, PRK09295, cysteine desulfurase SufS.	0
NC_011740.1\|WP_000528120.1\|1414318_1414528_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11719e-35
NC_011740.1\|WP_046077524.1\|1424347_1424437_+\|YnhF-family-membrane-protein	gnl\|CDD\|341227	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated.	0.00257469

>NC_011740.1|WP_000212672.1|1416337_1416643_-|monooxygenase
MATLLQLHFAFNGPFGNEMAEQLRPLAETINQEPGFLWKVWTESEKNHEAGGIYLFASEETALAYLEKHTARLKNLGVEEVIAKVFDVNIPLSQINKAKLD
>NC_011740.1|WP_001252600.1|1414566_1416177_-|FAD-NAD(P)-binding-protein
MRRIAIVGGGPTGIYTLNSLLEQQTPVSVTLFEQADEAGVGMPYSDEDNSKIMLANIASIEIPPVNITYLEWLQQQSDEHLARYGIQRATLHDRQFLPRILLGEYFRAQFLQLVKRAKAQHFIVNIHESCRVTDIEATTKGVRIWAENSSDAGEFDLAVIATGHVWPDETQATRCYFPSPWSGLMEAKIPPCKVGIMGTSLSGLDAAMAVAIQHGKFTESANKQLRFHLNENSDNLELTLMSRTGVLPEADFYCPIPYESLTIVTAAAIEQEIAAGSQGLLNRIFRLIVAELEVADPAWCQSIALNTLDADSFATAWFAERKSHDPFLWAEANLQEVERNKRQKYTVPWRYTILRLHEVVQEIVPHLNEEDSQRFSKGLARVFIDNYAAIPSESIRRLLALHKAGLITVLALGNEYEMTVNETETVITTTECKYTFDLFIDARGQRPLKINDLPFPRLRKQLAASGEDIPDIGSDYTLQSPEIVRGRIAFAALPWLMHDRPFVQGLTACADIAESMAKAISQSAPSRRKYLIYTEE
>NC_011740.1|WP_000528120.1|1414318_1414528_+|fumarate-hydratase-FumD
MGNQTKEDDLYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANQRIKRTELEKQAMETVIKALAG
>NC_011740.1|WP_000751455.1|1412392_1413805_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLTKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKQAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGNNEIVAVTYEGLTSDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVEEIRAHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMTSRLDFNNDSRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAQKGDVVVMVSGALVPSGTTNTASVHVL
>NC_011740.1|WP_000843205.1|1411847_1412084_-|murein-lipoprotein-Lpp
MKSTKLVLGAVILASTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYKK
>NC_011740.1|WP_000817108.1|1410792_1411794_+|L,D-transpeptidase-family-protein
MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKGVDQKLVDKALYRRAGYPVAVSEGGAVTGGAPVINSAQNAPSVAGVQEQVTQ
>NC_011740.1|WP_000279739.1|1410227_1410644_+|cysteine-desulfuration-protein-SufE
MAVLPDKEKLLRNFLRCANWEEKYLYIIELGQRMPELHDEDKSPQNSVQGCQSQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS
>NC_011740.1|WP_000144590.1|1408994_1410215_+|cysteine-desulfurase-SufS
MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLVEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLLG
>NC_011740.1|WP_000907953.1|1407726_1408998_+|Fe-S-cluster-assembly-protein-SufD
MAGLPNSSNALQQWHHLFEAEGAKRSPQAQQHLQQLLRTGLPTRKHEHWKYTPLEGLTNSQFVSIAGEIFPQQRDALALTLDAVRLVFVDGRYVPELSDTTEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVVGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPVSHHFAHNDLLLADDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQMFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGGAR
>NC_011740.1|WP_000948890.1|1407005_1407752_+|Fe-S-cluster-assembly-ATPase-SufC
MLSIKDLHVSVEDKTILRGLSLDVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ
>NC_011740.1|WP_001174929.1|1417060_1418434_-|multidrug-efflux-MATE-transporter-MdtK
MQKYINEARQLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSLLIMLVLWNAGYIIRAMDNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYVFIYGHFGMPELGGVGCGVATAAVYWVMFVAMLSYVKNARSMRDIRNQQHSGKPDTAVMKRLVQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPLSLSAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATVTAIFTVSFREQIALLYNDNPQVITLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITFTAYWVLGLPSGYILALTDLVVQPMGPAGFWIGFIIGLTSAAIMMMLRMRYLQRLPSAIILQRAAR
>NC_011740.1|WP_000493936.1|1418651_1419299_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHIVELPDYMLDGLETGASVAHNGCCLTVTEIKGNQVSFDLMKETLRITNLGELQPGDWVNVERAAKFSDEIGGHLMSGHIMTTAEIAKILTSENNRQIWFKVQDKQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGEHVNIEIDPQTQAVVDTVERVLAARENALKEPGSETQV
>NC_011740.1|WP_000098871.1|1419339_1420488_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDDWYRIANELLSRADITINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPRHLKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCAYWKDADNLEAAQQAKLKMICEKLHLKPGMRVLDIGCGWGGLSQYLATHYGASVVGVTISAEQQKMAQERCAGLDVEILLEDYRDLNDQFDRIVSVGMFEHVGPKNYNTYFEVVDRNLKPDGLFLLHTIGSKKTDHNVDPWINKYIFPNGCLPSVRQIACASEPHFIMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVEHGLRVPR
>NC_011740.1|WP_001182330.1|1420777_1421983_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKGFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAVAQLLWGPLSDRYGRKPILLLGLTIFALGSLGMLWVTNAVGLLVLRFIQAIGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLVGSWLLVHFSWQSIFATLFAITVLLMIPALRLKPARKNQENKQQSLTFTTLLRSKAYRGNVLIYAACSASFFAWLTGSPFILSEMGYTPAVIGLSYVPQTIAFLIGGYGCRAALQKWHGQQMLPWLLVLFALSVIATWATSFINHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSWLISTPLLTTTSVMLATVVLVTVGYKMQSHAETANECCQRSDMAHGESH
>NC_011740.1|WP_000269508.1|1422096_1423029_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGAWFLKEGRSVIKKMQITRQQCQQIANGWRGELAIAVDNIVRPERTRQLIVDFYRHFDDVELRVFQEVFNGVWDALADGRVELAIGATQAIPVGGRYTFRDMGMLSWCCVVASHHPLAAMPGPLSDDTLRNWPSLVREDTSRNLPKRITWLLDNQKRVVVPDWESSATCISAGLCMAMVPTHFAKPWIDSGKWVALQLENPFPDAACCLTWQQNDMSPALAWLLDYLGDSETLNKEWLREPESAPTKTS
>NC_011740.1|WP_000190995.1|1423025_1424051_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLTMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALIKVPENWIVQGDFEPESGYRAMQQILAQTHRPTAVFCGGDIMAMGALCAADEMGLRVPQDISVIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NC_011740.1|WP_046077524.1|1424347_1424437_+|YnhF-family-membrane-protein
MSNDLKYSLITTLIVLALIVAGGLTAALH
>NC_011740.1|WP_000701020.1|1424604_1425771_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRNALIFLMAIFTLGNVLSAIAPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFMATAVLGVVSMVSLWFSLPKGGAGARPDVKKELGVLLRPQVLSALLTTVLGAGAMFTLYTYISPVLQTITHATPVFVTAMLVLIGVGFSIGNYLGGKFADRSVNGTLKGFLFLLMVIMLLIPFLARNEYGAAVAMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAGVALLLVFISARKQPEAVCVAG
>NC_011740.1|WP_000007279.1|1425816_1426398_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKLAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDAKPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFAAKNFAE
>NC_011740.1|WP_000101158.1|1426603_1427443_-|C40-family-peptidase
MARINRISITLCALLFTTLPFTPMAHASKQARATSATTHVTQKAEKKKSTTTTKKTAKASKNTNKKAVSKNKTSSKTASSSKKRLNTSPAKVSKTASHKAKATTKKVTTVAWTEKCTPRKGRKPVCVKVRNAAPGTIADAHKARVQKATKTAMNKLMQQIGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQEIKITSLSEDYWQRHYVGARRVMTPQTIR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	73616-73647	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	175138-175169	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	172916-172947	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	87094-87125	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	227950-227981	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	50515-50546	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	160607-160638	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	150728-150759	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	141575-141606	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	125039-125070	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	200394-200425	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	19424-19455	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	69289-69320	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	239970-240001	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	166134-166165	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	21763-21794	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	187184-187215	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	152559-152590	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	221210-221241	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	243334-243365	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	158760-158791	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	215042-215073	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	149852-149883	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	171490-171521	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	147268-147299	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	111062-111093	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_002305	Salmonella typhi plasmid R27, complete sequence	61928-61959	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	148416-148447	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	107086-107117	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	91436-91467	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	198021-198052	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	178981-179012	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	155328-155359	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	87566-87597	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	162752-162783	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	143205-143236	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	9362-9393	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	103716-103747	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	171490-171521	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	184240-184271	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	149853-149884	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	230030-230061	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	87397-87428	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	19770-19801	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	98313-98344	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	259889-259920	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	165970-166001	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	87530-87561	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	2019-2050	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	12725-12756	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	235960-235991	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	251491-251522	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	203026-203057	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	118043-118074	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_MF072964	Citrobacter freundii strain P10159 plasmid pP10159-4, complete sequence	202234-202265	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	103813-103844	0	1.0
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP026242	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence	152740-152771	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP009883	Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence	320743-320774	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	116859-116890	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP026171	Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence	85655-85686	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	KP899803	Salmonella enterica strain 8025 plasmid p8025, complete sequence	198218-198249	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP026196	Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence	124224-124255	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	CP009869	Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence	67804-67835	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	34064-34095	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	81494-81525	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP026391	Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence	320494-320525	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP029142	Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence	272667-272698	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	63902-63933	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP011635	Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence	326439-326470	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NC_019360	Citrobacter freundii plasmid pNDM-CIT, complete sequence	194453-194484	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	KY320277	Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence	303280-303311	1	0.969
NC_011740_2	2.10\|327568\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327568-327599	32	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	400405-400436	1	0.969
NC_011740_5	5.1\|1416822\|38\|NC_011740\|CRISPRCasFinder	1416822-1416859	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NC_011740_1	1.6\|311527\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311527-311558	32	NC_009705	Yersinia pseudotuberculosis IP 31758 plasmid p_153kb, complete sequence	58526-58557	5	0.844
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	43613-43644	6	0.812
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	43613-43644	6	0.812
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	665787-665818	6	0.812
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	MF403005	Agrobacterium phage Atu_ph02, complete genome	20150-20181	6	0.812
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NC_047846	Agrobacterium phage Atu_ph03, complete genome	20169-20200	6	0.812
NC_011740_1	1.1\|311222\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311222-311253	32	MT939492	Xanthomonas phage Xoo-sp14, complete genome	223853-223884	7	0.781
NC_011740_1	1.3\|311344\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311344-311375	32	MN062720	Microbacterium phage FuzzBuster, complete genome	20724-20755	7	0.781
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	AP014008	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S41-C20, * SEQUENCING IN PROGRESS *	38339-38370	7	0.781
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	AP014009	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S45-C17, * SEQUENCING IN PROGRESS *	34728-34759	7	0.781
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_047711	Uncultured phage_MedDCM-OCT-S28-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-C62A-MedDCM-OCT-S28-C10	40768-40799	7	0.781
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	8828-8859	7	0.781
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	12062-12093	7	0.781
NC_011740_2	2.17\|327996\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327996-328027	32	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	520884-520915	7	0.781
NC_011740_2	2.18\|328057\|32\|NC_011740\|CRISPRCasFinder,CRT	328057-328088	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	487012-487043	7	0.781
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	265852-265883	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	455482-455513	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	213476-213507	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	425421-425452	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	417065-417096	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	351457-351488	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	221700-221731	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	330512-330543	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	49339-49370	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	179240-179271	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	425423-425454	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	278332-278363	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	264347-264378	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	24940-24971	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	307134-307165	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	178386-178417	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	538090-538121	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	353812-353843	8	0.75
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	330510-330541	8	0.75
NC_011740_1	1.9\|311710\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311710-311741	32	CP045780	Cronobacter sakazakii strain CFSAN068773 plasmid p2CFSAN068773, complete sequence	7696-7727	8	0.75
NC_011740_1	1.9\|311710\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311710-311741	32	EF537008	Phormidium phage Pf-WMP3, complete genome	11873-11904	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	265852-265883	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	455482-455513	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	213476-213507	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	425421-425452	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	417065-417096	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	351457-351488	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	221700-221731	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	330512-330543	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	49339-49370	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	179240-179271	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	425423-425454	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	278332-278363	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	264347-264378	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	24940-24971	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	307134-307165	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	178386-178417	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	538090-538121	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	353812-353843	8	0.75
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	330510-330541	8	0.75
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	AP014129	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S34-C46, * SEQUENCING IN PROGRESS *	4713-4744	8	0.75
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NZ_CP026559	Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p2_tig3, complete sequence	17921-17952	8	0.75
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NZ_LT985190	Pseudomonas syringae group genomosp. 3 strain CFBP 3800 plasmid PP1, complete sequence	12735-12766	8	0.75
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	597020-597051	8	0.75
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NZ_CP026565	Pseudomonas avellanae strain R2leaf plasmid p3_tig6, complete sequence	25503-25534	8	0.75
NC_011740_2	2.19\|328118\|32\|NC_011740\|CRISPRCasFinder,CRT	328118-328149	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
NC_011740_3	3.2\|1060006\|30\|NC_011740\|CRISPRCasFinder	1060006-1060035	30	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9738-9767	8	0.733
NC_011740_3	3.2\|1060006\|30\|NC_011740\|CRISPRCasFinder	1060006-1060035	30	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9739-9768	8	0.733
NC_011740_3	3.2\|1060006\|30\|NC_011740\|CRISPRCasFinder	1060006-1060035	30	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9738-9767	8	0.733
NC_011740_1	1.1\|311222\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311222-311253	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1344615-1344646	9	0.719
NC_011740_1	1.1\|311222\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311222-311253	32	NC_011962	Rhodobacter sphaeroides KD131 plasmid pRSKD131A, complete sequence	86300-86331	9	0.719
NC_011740_1	1.1\|311222\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311222-311253	32	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1150867-1150898	9	0.719
NC_011740_1	1.4\|311405\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311405-311436	32	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	402153-402184	9	0.719
NC_011740_2	2.1\|327019\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327019-327050	32	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	402153-402184	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY705285	Streptococcus phage P9852, complete genome	25189-25220	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_017543	Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence	284429-284460	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554775	Lactococcus phage AM11, complete genome	60361-60392	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554773	Lactococcus phage AM8, complete genome	60358-60389	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554768	Lactococcus phage AM1, complete genome	60588-60619	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554769	Lactococcus phage AM2, complete genome	60585-60616	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554772	Lactococcus phage AM5, complete genome	61496-61527	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554770	Lactococcus phage AM3, complete genome	60962-60993	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	HM029250	Lactococcus phage 949, complete genome	59291-59322	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_049856	Lactococcus phage AM4, complete genome	43541-43572	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554776	Lactococcus phage AM12, complete genome	60342-60373	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_027341	Lactococcus phage WRP3, complete genome	63533-63564	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY554774	Lactococcus phage AM9, complete genome	60359-60390	9	0.719
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_049857	Lactococcus phage P1048, complete genome	57188-57219	9	0.719
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	504254-504285	9	0.719
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	MN693133	Marine virus AFVG_25M54, complete genome	15545-15576	9	0.719
NC_011740_2	2.14\|327813\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327813-327844	32	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	55186-55217	9	0.719
NC_011740_3	3.1\|1059946\|30\|NC_011740\|CRISPRCasFinder	1059946-1059975	30	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	644947-644976	9	0.7
NC_011740_3	3.1\|1059946\|30\|NC_011740\|CRISPRCasFinder	1059946-1059975	30	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	828923-828952	9	0.7
NC_011740_3	3.1\|1059946\|30\|NC_011740\|CRISPRCasFinder	1059946-1059975	30	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	931573-931602	9	0.7
NC_011740_1	1.1\|311222\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311222-311253	32	MF893341	Ralstonia phage RPSC1, complete genome	20135-20166	10	0.688
NC_011740_1	1.1\|311222\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311222-311253	32	NZ_CP034472	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence	47954-47985	10	0.688
NC_011740_1	1.1\|311222\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311222-311253	32	NZ_CP034477	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence	133077-133108	10	0.688
NC_011740_1	1.3\|311344\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311344-311375	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1100107-1100138	10	0.688
NC_011740_1	1.3\|311344\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	311344-311375	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	544304-544335	10	0.688
NC_011740_1	1.16\|312137\|32\|NC_011740\|CRISPRCasFinder,CRT	312137-312168	32	NZ_CP050185	Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence	75474-75505	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	MH937473	Streptococcus phage CHPC929, complete genome	28631-28662	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	MH937498	Streptococcus phage CHPC1057, complete genome	25933-25964	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	MH892360	Streptococcus phage SW11, complete genome	36188-36219	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_007019	Streptococcus phage 2972, complete genome	26255-26286	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	AY699705	Streptococcus thermophilus bacteriophage 2972, complete genome	26255-26286	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_000871	Streptococcus phage Sfi19, complete genome	26528-26559	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	AF158601	Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds	3597-3628	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_010353	Streptococcus phage 858, complete genome	26833-26864	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	MH937484	Streptococcus phage CHPC1008, complete genome	25913-25944	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	AF115102	Streptococcus thermophilus bacteriophage Sfi19, complete genome	26528-26559	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	KY705286	Streptococcus phage P9853, complete genome	24862-24893	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	MH937469	Streptococcus phage CHPC919, complete genome	24848-24879	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP019922	Borreliella burgdorferi strain PAbe plasmid p_lp17, complete sequence	15441-15472	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP019923	Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence	25007-25038	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP019926	Borreliella burgdorferi strain PAbe plasmid p_lp56, complete sequence	51578-51609	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_011781	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-3, complete sequence	27105-27136	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_011782	Borreliella burgdorferi ZS7 plasmid ZS7_lp17, complete sequence	1945-1976	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_017405	Borreliella burgdorferi JD1 plasmid JD1 lp28-3, complete sequence	1393-1424	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	LR217706	Candidatus Erwinia sp. (ex Cinara spp.) strain ErCisplendens/pseudotsugae genome assembly, plasmid: pBioThi	7724-7755	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP031402	Borreliella burgdorferi strain MM1 plasmid plsm_lp28-3, complete sequence	707-738	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	62529-62560	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_001853	Borreliella burgdorferi B31 plasmid lp28-3, complete sequence	1387-1418	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_000956	Borreliella burgdorferi B31 plasmid lp56, complete sequence	51578-51609	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP019851	Borreliella burgdorferi plasmid lp17, complete sequence	15461-15492	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP019855	Borreliella burgdorferi plasmid lp56, complete sequence	51579-51610	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP019761	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp17, complete sequence	15462-15493	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP019766	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp56, complete sequence	51558-51589	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_004988	Borrelia burgdorferi ATCC 35210 plasmid lp16.9, complete sequence	1358-1389	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	73245-73276	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_001849	Borreliella burgdorferi B31 plasmid lp17, complete sequence	1329-1360	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NC_001851	Borreliella burgdorferi B31 plasmid lp28-1, complete sequence	3120-3151	10	0.688
NC_011740_2	2.2\|327080\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327080-327111	32	NZ_CP015730	Bacillus cereus strain A1 plasmid pBCA1, complete sequence	11138-11169	11	0.656
NC_011740_2	2.8\|327446\|32\|NC_011740\|PILER-CR,CRISPRCasFinder,CRT	327446-327477	32	NZ_CP029775	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed1, complete sequence	13757-13788	11	0.656

1. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

2. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

3. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

4. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

5. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

6. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

7. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

8. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

9. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

10. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

11. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

12. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

13. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

14. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

15. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

16. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

17. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

18. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

19. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

20. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

21. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

22. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

23. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

24. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

25. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

26. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

27. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

28. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

29. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

30. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

31. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

32. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

33. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

34. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

35. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

36. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

37. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

38. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

39. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

40. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

41. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

42. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

43. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

44. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

45. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

46. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

47. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

48. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

49. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

50. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

51. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

52. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

53. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

54. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

55. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

56. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

57. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

58. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

59. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

60. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

61. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

62. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

63. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

64. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

65. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

66. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

67. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

68. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

69. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

70. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

71. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

72. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF072964 (Citrobacter freundii strain P10159 plasmid pP10159-4, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

73. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggccagcacggc	Protospacer
********************************

74. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

75. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

76. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

77. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

78. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KP899803 (Salmonella enterica strain 8025 plasmid p8025, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

79. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

80. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

81. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

82. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

83. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

84. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

85. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

86. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

87. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_019360 (Citrobacter freundii plasmid pNDM-CIT, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

88. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY320277 (Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

89. spacer 2.10|327568|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 1, identity: 0.969

gtcacttcgtttttatcaacggccagcacggc	CRISPR spacer
gtcacttcgtttttatcaacggtcagcacggc	Protospacer
**********************.*********

90. spacer 5.1|1416822|38|NC_011740|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

91. spacer 1.6|311527|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_009705 (Yersinia pseudotuberculosis IP 31758 plasmid p_153kb, complete sequence) position: , mismatch: 5, identity: 0.844

--cccgccgcaccggattcctgaactaacttctt	CRISPR spacer
ataccgc--caccgtattcctgaactaacttctc	Protospacer
   ****  ***** ******************.

92. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 6, identity: 0.812

tgatc-cgggtgtctaacgaactgctgagcgat	CRISPR spacer
-gaccgctggtgtctatcgaactgctgatcgag	Protospacer
 **.* * ******** *********** ***

93. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 6, identity: 0.812

tgatc-cgggtgtctaacgaactgctgagcgat	CRISPR spacer
-gaccgctggtgtctatcgaactgctgatcgag	Protospacer
 **.* * ******** *********** ***

94. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 6, identity: 0.812

cgcagcagatgcaggcagcacagca-gcagcaa	CRISPR spacer
ggcagcagatgcagccagcccagcatgccgcg-	Protospacer
 ************* **** ***** ** **.

95. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MF403005 (Agrobacterium phage Atu_ph02, complete genome) position: , mismatch: 6, identity: 0.812

cgcagcagatgcaggcagcacagca-gcagcaa	CRISPR spacer
aacagcagatgcaggcagaacaacaggctgca-	Protospacer
 .**************** ***.** ** ***

96. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_047846 (Agrobacterium phage Atu_ph03, complete genome) position: , mismatch: 6, identity: 0.812

cgcagcagatgcaggcagcacagca-gcagcaa	CRISPR spacer
aacagcagatgcaggcagaacaacaggctgca-	Protospacer
 .**************** ***.** ** ***

97. spacer 1.1|311222|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgaaaccggcaccccctgcgcctccgtc	CRISPR spacer
tgttcgaaaccggcagcacctgcgccagctgc	Protospacer
* ************* * ********  *  *

98. spacer 1.3|311344|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 7, identity: 0.781

gtcctacctgttggcgatttcagcatcatcat	CRISPR spacer
ggcggatcggttggcgatgtcagcatcaccat	Protospacer
* *  *.* ********* *********.***

99. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to AP014008 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S41-C20, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
aatcaagaaaacaatttagaaatacaagaaaa	Protospacer
****** *****************.** ....

100. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to AP014009 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C62A-MedDCM-OCT-S45-C17, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
aatcaagaaaacaatttagaaatacaagaaaa	Protospacer
****** *****************.** ....

101. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_047711 (Uncultured phage_MedDCM-OCT-S28-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-C62A-MedDCM-OCT-S28-C10) position: , mismatch: 7, identity: 0.781

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
aatcaagaaaacaatttagaaatacaagaaaa	Protospacer
****** *****************.** ....

102. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
aatcattaaaacaatttagaaaaatctatgga	Protospacer
***** **************** **    **.

103. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 7, identity: 0.781

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
agacgataaaagaatttagatatataattgtg	Protospacer
*. *.****** ******** ******* * *

104. spacer 2.17|327996|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.781

gatggctgtcataaaaatttctccgctatttg	CRISPR spacer
aatggctgtcatggaaatttctccgctctccc	Protospacer
.***********..************* *..

105. spacer 2.18|328057|32|NC_011740|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 7, identity: 0.781

-cattacgtaaaagcgtagaaggcgaaaatcac	CRISPR spacer
gcgtt-cgtaaaagcttaaaaggcgaaaaactg	Protospacer
 *.** ********* **.********** *

106. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

107. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

108. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

109. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

110. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

111. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

112. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

113. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

114. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

115. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

116. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

117. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

118. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

119. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

120. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

121. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

122. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

123. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

124. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

125. spacer 1.9|311710|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to CP045780 (Cronobacter sakazakii strain CFSAN068773 plasmid p2CFSAN068773, complete sequence) position: , mismatch: 8, identity: 0.75

ttggcgcggatctacaaccctgactgacgggg	CRISPR spacer
ttggcgcagatctgcaaccctgagcggctccg	Protospacer
*******.*****.********* .*.*   *

126. spacer 1.9|311710|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to EF537008 (Phormidium phage Pf-WMP3, complete genome) position: , mismatch: 8, identity: 0.75

ttggcgcgg----atctacaaccctgactgacgggg	CRISPR spacer
----ggcagcactatctacaaccctgacgtacgggg	Protospacer
     **.*    ***************  ******

127. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

128. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

129. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

130. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

131. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

132. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

133. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

134. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

135. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

136. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

137. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

138. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

139. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

140. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

141. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

142. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgcgtgtctatcgaactgctgatcgag	Protospacer
  * *.* ******* *********** ***

143. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

144. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctgagtgtctatcgaactgctgatcgag	Protospacer
.*. *.*.******* *********** ***

145. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 8, identity: 0.75

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
acagctgagtgtctatcgaactgctgatcgag	Protospacer
  * *.*.******* *********** ***

146. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to AP014129 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C44-MedDCM-OCT-S34-C46, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ctacaagaaaagaatttagaaatataacagga	Protospacer
   *** **** ***************..**.

147. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026559 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p2_tig3, complete sequence) position: , mismatch: 8, identity: 0.75

cgcagcagatgcaggcagcacagcagcagcaa	CRISPR spacer
tgcagcaaatgcaggcaggacagcacaaggct	Protospacer
.******.********** ******  **

148. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT985190 (Pseudomonas syringae group genomosp. 3 strain CFBP 3800 plasmid PP1, complete sequence) position: , mismatch: 8, identity: 0.75

cgcagcagatgcaggcagcacagcagcagcaa	CRISPR spacer
tgcagcaaatgcaggcaggacagcacaaggct	Protospacer
.******.********** ******  **

149. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 8, identity: 0.75

cgcagcagatgcaggcagcacagcagcagcaa	CRISPR spacer
accagcagatgcaggaagcacggcagaacgca	Protospacer
  ************* *****.**** *   *

150. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026565 (Pseudomonas avellanae strain R2leaf plasmid p3_tig6, complete sequence) position: , mismatch: 8, identity: 0.75

cgcagcagatgcaggcagcacagcagcagcaa	CRISPR spacer
tgcagcaaatgcaggcaggacagcacaaggct	Protospacer
.******.********** ******  **

151. spacer 2.19|328118|32|NC_011740|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaacgacggtgagatttcacgcctgacgctg	CRISPR spacer
tcaacgacggtaagatgtcacgcctaaagaat	Protospacer
 **********.**** ********.* *

152. spacer 3.2|1060006|30|NC_011740|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 8, identity: 0.733

ttcactggtaacatactccacccgcccacc	CRISPR spacer
tgtcctggtaacatgttccacccgcccggt	Protospacer
* . **********..***********. .

153. spacer 3.2|1060006|30|NC_011740|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 8, identity: 0.733

ttcactggtaacatactccacccgcccacc	CRISPR spacer
tgtcctggtaacatgttccacccgcccggt	Protospacer
* . **********..***********. .

154. spacer 3.2|1060006|30|NC_011740|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 8, identity: 0.733

ttcactggtaacatactccacccgcccacc	CRISPR spacer
tgtcctggtaacatgttccacccgcccggt	Protospacer
* . **********..***********. .

155. spacer 1.1|311222|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.719

ttttcgaaaccggcaccccctgcgcctccgtc	CRISPR spacer
ccttcgaatccggcacccccagcgccgcacga	Protospacer
..****** *********** ***** *

156. spacer 1.1|311222|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_011962 (Rhodobacter sphaeroides KD131 plasmid pRSKD131A, complete sequence) position: , mismatch: 9, identity: 0.719

ttttcgaaaccggcaccccctgcgcctccgtc	CRISPR spacer
ccatcgagaccggcaccccctccgccagcgcg	Protospacer
.. ****.************* ****  **.

157. spacer 1.1|311222|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 9, identity: 0.719

ttttcgaaaccggcaccccctgcgcctccgtc	CRISPR spacer
tggtcgaaaccggcacgcccagcgccgaagca	Protospacer
*  ************* *** *****   *.

158. spacer 1.4|311405|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 9, identity: 0.719

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctaagtgtctatcgaactgctgatcgag	Protospacer
.*. *...******* *********** ***

159. spacer 2.1|327019|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 9, identity: 0.719

tgatccgggtgtctaacgaactgctgagcgat	CRISPR spacer
cgggctaagtgtctatcgaactgctgatcgag	Protospacer
.*. *...******* *********** ***

160. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY705285 (Streptococcus phage P9852, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttttaataaaacaatttaaaaatataactaaa	Protospacer
  *.**************.********. ...

161. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ctactataaaataatttagaaataaaatcacg	Protospacer
   * ******.************ *** . *

162. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

163. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

164. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554768 (Lactococcus phage AM1, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

165. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

166. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554772 (Lactococcus phage AM5, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
actcaattaaagaatttagaaatatccatgat	Protospacer
* ***** *** *************    *.

167. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

168. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgat	Protospacer
* ***** *** *************    *.

169. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
actcaattaaagaatttagaaatatccatgat	Protospacer
* ***** *** *************    *.

170. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

171. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_027341 (Lactococcus phage WRP3, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

172. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

173. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 9, identity: 0.719

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
attcaattaaagaatttagaaatatccatgac	Protospacer
* ***** *** *************    *.

174. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 9, identity: 0.719

cgcagcagatgcaggcagcacagcagcagcaa	CRISPR spacer
accagcagattcaggcagcgcagcagggtgga	Protospacer
  ******** ********.****** .  .*

175. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MN693133 (Marine virus AFVG_25M54, complete genome) position: , mismatch: 9, identity: 0.719

-cgcagcagatgcaggcagcacagcagcagcaa	CRISPR spacer
acgt-gcaggcgcaggcagcacagcagcttttt	Protospacer
 **. ****..*****************  .

176. spacer 2.14|327813|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.719

gtttacatgcaggcgctggtcacgtgggctgc	CRISPR spacer
cggtgggtgcaggcgctggtcacgcgcgctgg	Protospacer
   *. .*****************.* ****

177. spacer 3.1|1059946|30|NC_011740|CRISPRCasFinder matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 9, identity: 0.7

aatggtgaatatggcagaaaagccctttgc	CRISPR spacer
cgtggtgaatctggcagaaaagcatacgcc	Protospacer
 .******** ************ . .  *

178. spacer 3.1|1059946|30|NC_011740|CRISPRCasFinder matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 9, identity: 0.7

aatggtgaatatggcagaaaagccctttgc	CRISPR spacer
cgtggtgaatctggcagaaaagcatacgcc	Protospacer
 .******** ************ . .  *

179. spacer 3.1|1059946|30|NC_011740|CRISPRCasFinder matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 9, identity: 0.7

aatggtgaatatggcagaaaagccctttgc	CRISPR spacer
cgtggtgaatctggcagaaaagcatacgcc	Protospacer
 .******** ************ . .  *

180. spacer 1.1|311222|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MF893341 (Ralstonia phage RPSC1, complete genome) position: , mismatch: 10, identity: 0.688

ttttcgaaaccggcaccccctgcgcctccgtc	CRISPR spacer
ggcggacaaccgccacaccctgcgcctccgta	Protospacer
  .  . ***** *** **************

181. spacer 1.1|311222|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034472 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcgaaaccggcaccccctgcgcctccgtc	CRISPR spacer
gcagcgaaaccggccgcccctgcgccttttcc	Protospacer
 .  **********  ***********.. .*

182. spacer 1.1|311222|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034477 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcgaaaccggcaccccctgcgcctccgtc	CRISPR spacer
gcagcgaaaccggccgcccctgcgccttttcc	Protospacer
 .  **********  ***********.. .*

183. spacer 1.3|311344|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 10, identity: 0.688

gtcctacctgttggcgatttcagcatcatcat	CRISPR spacer
ataagctctgttggcgatttcaacttcatcgg	Protospacer
.*    .***************.* *****.

184. spacer 1.3|311344|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 10, identity: 0.688

gtcctacctgttggcgatttcagcatcatcat	CRISPR spacer
ataagctctgttggcgatttcaacttcatcgg	Protospacer
.*    .***************.* *****.

185. spacer 1.16|312137|32|NC_011740|CRISPRCasFinder,CRT matches to NZ_CP050185 (Bacillus thuringiensis strain HER1410 plasmid pLUSID2, complete sequence) position: , mismatch: 10, identity: 0.688

gcttcagatacatatactttaagtgcagcgct	CRISPR spacer
tgtacagatacatatactatcagtgcaaaagc	Protospacer
  * ************** * ******. . .

186. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

187. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MH937498 (Streptococcus phage CHPC1057, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

188. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MH892360 (Streptococcus phage SW11, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

189. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_007019 (Streptococcus phage 2972, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

190. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to AY699705 (Streptococcus thermophilus bacteriophage 2972, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

191. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_000871 (Streptococcus phage Sfi19, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

192. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to AF158601 (Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

193. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_010353 (Streptococcus phage 858, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

194. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MH937484 (Streptococcus phage CHPC1008, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

195. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to AF115102 (Streptococcus thermophilus bacteriophage Sfi19, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

196. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to KY705286 (Streptococcus phage P9853, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

197. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to MH937469 (Streptococcus phage CHPC919, complete genome) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
ttgtaataaaacaatttaaaaatataactaaa	Protospacer
   .**************.********. ...

198. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019922 (Borreliella burgdorferi strain PAbe plasmid p_lp17, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

199. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019923 (Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaatcaatttagaaatataaatgta	Protospacer
 .. *** ** ****************  * .

200. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019926 (Borreliella burgdorferi strain PAbe plasmid p_lp56, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

201. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_011781 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-3, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

202. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_011782 (Borreliella burgdorferi ZS7 plasmid ZS7_lp17, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

203. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_017405 (Borreliella burgdorferi JD1 plasmid JD1 lp28-3, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

204. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to LR217706 (Candidatus Erwinia sp. (ex Cinara spp.) strain ErCisplendens/pseudotsugae genome assembly, plasmid: pBioThi) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
gcttaataaaacaatctaaaaatataaacata	Protospacer
. *.***********.**.********  . .

205. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031402 (Borreliella burgdorferi strain MM1 plasmid plsm_lp28-3, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

206. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
caattataaaacaatttggtaatataatactt	Protospacer
 * . ************.* ********.

207. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_001853 (Borreliella burgdorferi B31 plasmid lp28-3, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

208. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_000956 (Borreliella burgdorferi B31 plasmid lp56, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

209. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019851 (Borreliella burgdorferi plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

210. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019855 (Borreliella burgdorferi plasmid lp56, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

211. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019761 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp17, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

212. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019766 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp56, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

213. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_004988 (Borrelia burgdorferi ATCC 35210 plasmid lp16.9, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

214. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
caattataaaacaatttggtaatataatactt	Protospacer
 * . ************.* ********.

215. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_001849 (Borreliella burgdorferi B31 plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaagcaatttagaaatataaatgta	Protospacer
 .. *** **.****************  * .

216. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NC_001851 (Borreliella burgdorferi B31 plasmid lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
tgcaaattaatcaatttagaaatataaatgta	Protospacer
 .. *** ** ****************  * .

217. spacer 2.2|327080|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015730 (Bacillus cereus strain A1 plasmid pBCA1, complete sequence) position: , mismatch: 11, identity: 0.656

aatcaataaaacaatttagaaatataatgggg	CRISPR spacer
gcaaaataaaacaatttatatatataaattca	Protospacer
.   ************** * ******    .

218. spacer 2.8|327446|32|NC_011740|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029775 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

cgcagcagatgcaggcagcacagcagcagcaa	CRISPR spacer
actggcagaggcaggcagcccagcagcgtgcc	Protospacer
  ..***** ********* *******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

446951 : 459200

Enterobacteria_phage(77.78%)

integrase

attL 442953:442966|attR 465189:465202

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
442953:442966	attL	NA	NA	NA	NA
WP_000497434.1\|446951_447194_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	79.2
WP_000783677.1\|448501_450835_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	98.6
WP_000856727.1\|450849_451170_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000459294.1\|451305_451761_-	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
WP_001244665.1\|451753_452041_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_000980239.1\|452033_452633_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.3e-49	80.3
WP_001149160.1\|452629_452896_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_001283019.1\|453449_454184_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	7.2e-131	99.6
WP_000638633.1\|454180_454681_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000446139.1\|454754_455327_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.4e-94	96.2
WP_000258270.1\|455526_457977_-	hypothetical protein	NA	NA	NA	NA
WP_012599910.1\|458000_459200_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	4.5e-106	48.8
465189:465202	attR	NA	NA	NA	NA

DBSCAN-SWA_2

574754 : 663509

Shigella_phage(50.0%)

head,protease,terminase,integrase,tRNA,holin,plate,portal,capsid,tail

attL 584746:584762|attR 644887:644903

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295836.1\|574754_575378_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_001110563.1\|575348_576035_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.5e-34	36.1
WP_000561906.1\|576031_578446_+	ABC transporter permease	NA	NA	NA	NA
WP_000115620.1\|578682_578898_+	hypothetical protein	NA	NA	NA	NA
WP_001158011.1\|580594_581689_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_048814526.1\|581814_582621_+	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000855349.1\|582617_583511_+	carbamate kinase	NA	NA	NA	NA
WP_012599929.1\|584718_585228_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
584746:584762	attL	NA	NA	NA	NA
WP_001188444.1\|585323_585653_-	hypothetical protein	NA	NA	NA	NA
WP_000212257.1\|585763_586486_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_000256002.1\|586488_586983_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_000912350.1\|587156_588542_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143514.1\|588577_589099_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|589206_589419_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729174.1\|589420_590287_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.9e-31	37.7
WP_012599930.1\|590640_591804_-\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	1.1e-197	85.9
WP_000206731.1\|592030_592336_-	hypothetical protein	U5P0J0	Shigella_phage	4.4e-50	99.0
WP_001242749.1\|592335_592698_-	phage protein	U5P092	Shigella_phage	2.1e-67	100.0
WP_000008200.1\|592688_593225_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	4.3e-101	100.0
WP_000081291.1\|593352_594177_-	DUF2303 family protein	U5P439	Shigella_phage	1.7e-149	99.6
WP_000135682.1\|594242_594605_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_000016389.1\|595073_595508_+	hypothetical protein	U5P096	Shigella_phage	8.4e-79	100.0
WP_000549626.1\|595479_595686_-	hypothetical protein	NA	NA	NA	NA
WP_000389078.1\|595951_596842_+	BRCT domain-containing protein	U3PB51	Vibrio_phage	4.5e-34	31.6
WP_000853318.1\|596824_597511_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	2.7e-39	42.0
WP_000187185.1\|597646_597895_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000515874.1\|597917_598469_+	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
WP_001250269.1\|598644_598824_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104943.1\|598813_599755_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.9e-140	93.0
WP_012599936.1\|599751_600246_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	3.1e-85	96.3
WP_024256389.1\|600245_600899_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	3.6e-126	98.6
WP_000210160.1\|600895_601222_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	1.0e-52	98.1
WP_000767113.1\|601218_601608_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061398.1\|601627_602425_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	9.8e-150	99.2
WP_021535407.1\|602432_603422_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	5.6e-195	99.4
WP_001204747.1\|603439_603802_+	antitermination protein Q	A5LH77	Enterobacteria_phage	2.5e-60	95.0
WP_001406331.1\|603852_604599_-	hypothetical protein	NA	NA	NA	NA
WP_001120496.1\|604865_605192_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	1.2e-56	99.1
WP_001197743.1\|605195_605672_+	glycoside hydrolase family protein	U5P0A9	Shigella_phage	9.2e-87	98.1
WP_012599940.1\|605655_606048_+	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	1.4e-53	86.2
WP_000264700.1\|606573_607008_+	hypothetical protein	NA	NA	NA	NA
WP_001135210.1\|607135_607486_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	3.1e-63	96.6
WP_000929192.1\|607611_608106_+\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	2.3e-88	99.4
WP_072011717.1\|608339_609836_+\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	7.4e-300	99.8
WP_000605606.1\|609847_610030_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_000466255.1\|610029_611271_+\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
WP_001193631.1\|611248_611899_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_000257486.1\|611913_613119_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.6e-223	99.5
WP_000601368.1\|613168_613369_+	hypothetical protein	S5FNU1	Shigella_phage	6.5e-26	97.0
WP_000927709.1\|613371_613695_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.7e-55	98.1
WP_000702383.1\|613691_614102_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	3.6e-71	95.6
WP_000235782.1\|614076_614583_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.2e-89	98.8
WP_000779303.1\|614579_615140_+	hypothetical protein	Q8SBH4	Shigella_phage	4.0e-105	98.9
WP_000497750.1\|615148_615319_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	2.7e-25	98.2
WP_000178797.1\|615302_616799_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1FN90	Enterobacteria_phage	1.6e-270	98.0
WP_000090998.1\|616798_617155_+\|tail	phage tail tube protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000661051.1\|617154_617424_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	6.0e-43	98.9
WP_000807180.1\|617565_619398_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	6.1e-304	99.0
WP_012599943.1\|619479_619992_+	hypothetical protein	NA	NA	NA	NA
WP_000219918.1\|620082_621411_+	DNA circularization N-terminal domain-containing protein	Q8SBG8	Shigella_phage	3.2e-246	99.1
WP_000999492.1\|621407_622487_+	hypothetical protein	Q8SBG7	Shigella_phage	7.7e-206	99.2
WP_001259077.1\|622486_623035_+\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	1.6e-95	98.4
WP_000424732.1\|623034_623460_+	phage GP46 family protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_000785293.1\|623446_624505_+\|plate	baseplate J/gp47 family protein	U5P424	Shigella_phage	2.6e-198	98.0
WP_000383568.1\|624495_625080_+	YmfQ family protein	O22003	Shigella_phage	2.4e-113	99.0
WP_000970412.1\|626009_626549_+\|tail	tail fiber assembly protein	M1SNQ2	Escherichia_phage	3.0e-25	75.3
WP_000379299.1\|626946_628074_-	acyltransferase	NA	NA	NA	NA
WP_000979449.1\|628429_629941_-	hypothetical protein	NA	NA	NA	NA
WP_000703650.1\|629927_630860_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	1.2e-159	91.1
WP_000915537.1\|630856_631219_-	bactoprenol glucosyl transferase	U5P0S6	Shigella_phage	2.4e-55	92.5
WP_000883105.1\|631590_632781_-	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_000919150.1\|633108_634362_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.0e-101	53.0
WP_001094737.1\|634410_634833_-	DoxX family protein	NA	NA	NA	NA
WP_000244165.1\|635061_636201_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000982949.1\|636192_637473_-	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_000634373.1\|637668_638520_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000553451.1\|638653_639457_-	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000940026.1\|639575_640316_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_001241357.1\|640585_641074_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_012599947.1\|641314_642529_+	cysteine desulfurase	A0A1X7C038	Faustovirus	8.8e-33	31.8
WP_000331707.1\|642556_642943_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.4e-53	78.9
WP_000028953.1\|642959_643283_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.4e-22	48.6
WP_000384413.1\|643378_643894_+	co-chaperone HscB	NA	NA	NA	NA
WP_001196583.1\|643910_645761_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.5e-103	41.7
644887:644903	attR	NA	NA	NA	NA
WP_001124471.1\|645762_646098_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_000523616.1\|646109_646310_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_000133572.1\|646487_647771_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	2.9e-34	37.8
WP_012599948.1\|647889_648666_+	enhanced serine sensitivity protein SseB	NA	NA	NA	NA
WP_000214208.1\|649430_650276_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_001228873.1\|650481_655461_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_001253400.1\|655461_657774_+	peptidoglycan glycosyltransferase PbpC	NA	NA	NA	NA
WP_000963837.1\|657921_658353_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	3.7e-18	37.9
WP_000003319.1\|658502_659657_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_001090875.1\|659947_660964_+	cytoskeleton protein RodZ	NA	NA	NA	NA
WP_000551807.1\|660990_662109_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_000037895.1\|662219_663509_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_3

1136665 : 1181711

Bacillus_phage(33.33%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156542.1\|1136665_1138426_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877154.1\|1138610_1139066_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_024256413.1\|1139120_1140176_-	porin OmpA	NA	NA	NA	NA
WP_000288735.1\|1140532_1141042_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000793790.1\|1141258_1141888_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_032243386.1\|1141850_1144004_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_002431615.1\|1144023_1144470_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420507.1\|1144592_1146647_+	DNA helicase IV	A7KV33	Bacillus_phage	1.0e-20	27.9
WP_000424177.1\|1146678_1147137_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000643580.1\|1147232_1147895_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665266.1\|1148067_1148481_+	CoA-binding protein	NA	NA	NA	NA
WP_000561985.1\|1148527_1148845_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116320.1\|1148902_1150093_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048252.1\|1150187_1150466_+	acylphosphatase	NA	NA	NA	NA
WP_000904443.1\|1150462_1150792_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375129.1\|1150882_1151542_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
WP_024256417.1\|1152129_1152885_+	hypothetical protein	NA	NA	NA	NA
WP_002431613.1\|1153194_1154313_+	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_000107363.1\|1154309_1156103_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186414.1\|1156121_1156829_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003626.1\|1156825_1157413_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_000063963.1\|1157409_1157808_+	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA
WP_000004880.1\|1157804_1158659_+	hydrogenase expression/formation protein	NA	NA	NA	NA
WP_001091689.1\|1158752_1159418_+	YecA family protein	NA	NA	NA	NA
WP_024256419.1\|1159457_1160669_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000094892.1\|1160863_1161103_+	YecH family protein	NA	NA	NA	NA
WP_000909918.1\|1161140_1161638_-	non-heme ferritin	NA	NA	NA	NA
WP_000706230.1\|1161767_1162103_-	hypothetical protein	NA	NA	NA	NA
WP_000246690.1\|1162248_1162752_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000548664.1\|1163709_1164699_+	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_002432082.1\|1164793_1166308_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A285PWH2	Cedratvirus	1.1e-11	29.2
WP_000100214.1\|1166322_1167309_+	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_000165652.1\|1167462_1168266_+	trehalose-phosphatase	NA	NA	NA	NA
WP_000089024.1\|1168240_1169665_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_000332011.1\|1169671_1170100_-	universal stress protein UspC	NA	NA	NA	NA
WP_002431607.1\|1170917_1171268_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_001291584.1\|1171270_1171849_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_000905460.1\|1171972_1172860_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_000796096.1\|1172856_1173771_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_072274242.1\|1173775_1175731_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_001098482.1\|1175747_1176242_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_001038662.1\|1176511_1177081_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_032242962.1\|1177159_1177633_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_000836025.1\|1177645_1178392_+	molecular chaperone	NA	NA	NA	NA
WP_002431605.1\|1178367_1180755_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000638294.1\|1180751_1181711_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_4

2019593 : 2054275

uncultured_Caudovirales_phage(50.0%)

holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000201154.1\|2019593_2020949_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_123059606.1\|2020951_2021455_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000829652.1\|2021481_2022762_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000907476.1\|2022785_2023823_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000895889.1\|2023786_2025619_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000877049.1\|2025624_2026062_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000058010.1\|2026064_2027546_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000098291.1\|2027560_2028061_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142958.1\|2028752_2029271_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001114047.1\|2029480_2031427_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	5.4e-24	39.4
WP_001106814.1\|2031448_2031868_+	DUF1795 domain-containing protein	NA	NA	NA	NA
WP_000534321.1\|2031894_2036526_+	RHS domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	4.7e-26	36.2
WP_000104379.1\|2036532_2036805_+	hypothetical protein	NA	NA	NA	NA
WP_001016369.1\|2037983_2039438_-	AMP nucleosidase	NA	NA	NA	NA
WP_000378536.1\|2039565_2040870_-	shikimate transporter	NA	NA	NA	NA
WP_001027998.1\|2041420_2042857_-	EmmdR/YeeO family multidrug/toxin efflux MATE transporter	NA	NA	NA	NA
WP_000926369.1\|2043438_2044017_+	TetR family transcriptional regulator	A0A0R6PIB6	Moraxella_phage	3.4e-11	32.1
WP_001270146.1\|2044039_2044858_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001217010.1\|2044857_2045376_+	hypothetical protein	NA	NA	NA	NA
WP_000502008.1\|2045895_2046174_+	BMC domain-containing protein	NA	NA	NA	NA
WP_000502010.1\|2046191_2046476_+	BMC domain-containing protein	NA	NA	NA	NA
WP_001206281.1\|2046490_2046769_+	BMC domain-containing protein	NA	NA	NA	NA
WP_000570987.1\|2046822_2048409_+	acetaldehyde dehydrogenase (acetylating)	NA	NA	NA	NA
WP_000599365.1\|2048435_2048693_+	EutN/CcmL family microcompartment protein	NA	NA	NA	NA
WP_001288714.1\|2048708_2049863_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_000035050.1\|2049889_2053276_+\|holin	choline trimethylamine-lyase	A0A1S6UAD4	Serratia_phage	9.7e-05	45.0
WP_001275638.1\|2053327_2054275_+\|holin	choline TMA-lyase-activating enzyme	NA	NA	NA	NA

DBSCAN-SWA_5

2080367 : 2120400

Enterobacteria_phage(36.84%)

terminase,protease,integrase,holin,lysis,coat,portal

attL 2090067:2090081|attR 2120913:2120927

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000843775.1\|2080367_2082317_+	acyltransferase	W6MVL2	Pseudomonas_phage	2.6e-58	37.3
WP_024256482.1\|2084926_2086768_-	hypothetical protein	A0A192Y934	Salmonella_phage	1.7e-245	73.7
WP_000246965.1\|2086767_2088180_-	phage DNA ejection protein	I6RSG0	Salmonella_phage	1.7e-128	56.1
WP_000904613.1\|2088192_2088846_-	hypothetical protein	G5DA80	Enterobacteria_phage	4.2e-58	61.9
WP_000403515.1\|2088820_2089300_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	8.4e-64	73.4
WP_000785524.1\|2089299_2090148_-	Packaged DNA stabilization protein gp26	Q716G6	Shigella_phage	2.4e-93	88.7
2090067:2090081	attL	NA	NA	NA	NA
WP_001122409.1\|2090147_2091566_-	packaged DNA stabilization protein gp10	Q716G7	Shigella_phage	2.7e-275	99.2
WP_001054833.1\|2091566_2092067_-	packaged DNA stabilization protein p27	G8EYJ2	Enterobacteria_phage	3.6e-89	98.2
WP_024256483.1\|2092044_2092317_-	hypothetical protein	A0A2D1GLK1	Escherichia_phage	4.4e-25	96.7
WP_001196942.1\|2092361_2093657_-\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	2.7e-242	99.3
WP_000373006.1\|2093656_2094568_-	scaffold protein	A0A2D1GLN7	Escherichia_phage	1.3e-161	100.0
WP_000752838.1\|2094581_2096747_-\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	0.0e+00	99.7
WP_000417851.1\|2096747_2098247_-\|terminase	terminase large subunit	A0A2D1GLW6	Escherichia_phage	4.8e-307	100.0
WP_000729922.1\|2098224_2098713_-	DNA-packaging protein	A0A0M3ULC0	Salmonella_phage	5.0e-88	100.0
WP_000091987.1\|2098736_2098916_-	hypothetical protein	A0A088CPS9	Enterobacteria_phage	3.7e-25	100.0
WP_000807785.1\|2098917_2099160_-	DUF2560 family protein	A0A0M4R322	Salmonella_phage	7.5e-37	100.0
WP_001016386.1\|2099512_2100031_-	Rha family transcriptional regulator	A0A2D1GLJ3	Escherichia_phage	3.2e-93	100.0
WP_015953503.1\|2100233_2100386_-	hypothetical protein	K7PHR3	Enterobacteria_phage	1.2e-21	100.0
WP_000092286.1\|2100373_2100841_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	2.5e-73	94.2
WP_001504512.1\|2100837_2101335_-	lysozyme RrrD	I6R0P2	Salmonella_phage	2.9e-91	99.4
WP_000286100.1\|2101312_2101516_-\|holin	phage holin family protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_001235473.1\|2102186_2102810_-	antitermination protein	K7PM87	Enterobacteria_phage	6.8e-114	99.5
WP_001271141.1\|2102806_2103472_-	serine/threonine protein phosphatase	A0A2D1GLI5	Escherichia_phage	6.5e-131	98.6
WP_000144614.1\|2103449_2103656_-	phage NinH family protein	Q716C0	Shigella_phage	7.3e-33	100.0
WP_001108032.1\|2103652_2104264_-	recombination protein NinG	K7PHM2	Enterobacterial_phage	6.0e-99	99.0
WP_000237094.1\|2104256_2104649_-	hypothetical protein	A0A077SL57	Escherichia_phage	1.3e-14	35.2
WP_000950976.1\|2104638_2104818_-	protein ninF	Q76H71	Enterobacteria_phage	3.4e-26	98.3
WP_000386650.1\|2104817_2105195_-	DUF2591 family protein	A0A2D1GLI3	Escherichia_phage	4.6e-65	99.2
WP_001254255.1\|2105197_2105374_-	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_000814599.1\|2105370_2105781_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	8.0e-71	97.8
WP_024256485.1\|2105783_2106056_-	hypothetical protein	K7PKU8	Enterobacteria_phage	2.6e-25	62.9
WP_000806595.1\|2106744_2108121_-	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	1.8e-252	99.1
WP_000431322.1\|2108117_2109005_-	replication protein	A5VW95	Enterobacteria_phage	2.9e-142	96.3
WP_001244625.1\|2109067_2109340_-	hypothetical protein	G9L679	Escherichia_phage	7.9e-43	98.9
WP_000438533.1\|2109362_2109659_-	hypothetical protein	G9L678	Escherichia_phage	2.6e-47	96.9
WP_001180318.1\|2109765_2109993_-	helix-turn-helix domain-containing protein	G9L677	Escherichia_phage	7.8e-36	100.0
WP_000250471.1\|2110071_2110779_+	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	1.3e-132	98.3
WP_001280592.1\|2110885_2111263_+	hypothetical protein	NA	NA	NA	NA
WP_061360317.1\|2111243_2111723_+	hypothetical protein	NA	NA	NA	NA
WP_024256487.1\|2112183_2112525_+	hypothetical protein	E7C9Q7	Salmonella_phage	4.8e-29	64.6
WP_000915090.1\|2112533_2112671_+	hypothetical protein	Q716D9	Shigella_phage	1.3e-22	100.0
WP_000213975.1\|2112795_2112996_+	antirestriction Ral family protein	A0A0K2FJE6	Enterobacteria_phage	1.4e-33	100.0
WP_000005777.1\|2113168_2114137_+	hypothetical protein	K7P7J7	Enterobacteria_phage	1.3e-55	99.4
WP_000638547.1\|2114160_2114292_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
WP_001243350.1\|2114276_2114429_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	1.1e-20	98.0
WP_000050554.1\|2114504_2114675_+	hypothetical protein	K7PJW0	Enterobacteria_phage	3.0e-24	100.0
WP_000031368.1\|2114685_2115291_+	ERF family protein	K7P6W7	Enterobacteria_phage	2.7e-107	99.5
WP_000951333.1\|2115290_2115674_+	hypothetical protein	K7P7T7	Enterobacteria_phage	1.1e-66	99.2
WP_001111304.1\|2115697_2115994_+	DUF2856 family protein	A5VWB0	Enterobacteria_phage	7.8e-52	100.0
WP_000855558.1\|2116004_2116295_+	hypothetical protein	K7P7M4	Enterobacteria_phage	3.7e-46	100.0
WP_001214454.1\|2116291_2116459_+	DUF2737 family protein	Q716F2	Shigella_phage	8.6e-24	98.2
WP_000004318.1\|2116455_2116725_+	hypothetical protein	Q1MVG1	Enterobacteria_phage	2.5e-17	54.0
WP_000034181.1\|2116711_2117266_+	ead/Ea22-like family protein	A5VWB3	Enterobacteria_phage	1.6e-42	85.8
WP_000829409.1\|2117270_2117927_+	DUF551 domain-containing protein	A0A0N7KZ94	Stx2-converting_phage	9.2e-37	92.0
WP_000092026.1\|2117923_2118199_+	hypothetical protein	NA	NA	NA	NA
WP_000286787.1\|2118198_2118483_+	DUF4752 family protein	G9L657	Escherichia_phage	9.4e-47	94.7
WP_000002099.1\|2118475_2118757_+	ASCH domain-containing protein	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	3.8e-48	95.7
WP_000545718.1\|2118851_2119019_+	hypothetical protein	A0A2D1GM11	Escherichia_phage	2.9e-27	98.2
WP_000132739.1\|2119049_2119241_+	AlpA family phage regulatory protein	A0A0P0ZBL0	Stx2-converting_phage	1.7e-31	100.0
WP_024256491.1\|2119221_2120400_-\|integrase	site-specific integrase	A0A088CQ72	Enterobacteria_phage	4.0e-232	99.7
2120913:2120927	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2137768 : 2146897

Ostreococcus_lucimarinus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000043515.1\|2137768_2139175_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.1e-37	28.3
WP_065757558.1\|2139548_2140586_-	acyltransferase	Q716G0	Shigella_phage	1.1e-57	43.3
WP_001016780.1\|2140609_2141422_-	glycosyltransferase	NA	NA	NA	NA
WP_000736842.1\|2141495_2142863_-	colanic acid biosynthesis phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	3.4e-33	27.9
WP_001286273.1\|2142866_2144315_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.2e-57	32.1
WP_024256493.1\|2144307_2144808_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_000043593.1\|2144810_2145776_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	3.8e-87	50.5
WP_000861363.1\|2145778_2146897_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.1e-133	65.6

DBSCAN-SWA_7

2262573 : 2272031

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015953548.1\|2262573_2263710_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	2.0e-164	98.4
WP_001087238.1\|2263706_2265701_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	88.4
WP_000643203.1\|2265848_2266307_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	2.4e-52	69.9
WP_001295430.1\|2266349_2266820_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598631.1\|2266866_2267586_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_002431447.1\|2267582_2269268_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	3.3e-288	93.8
WP_001240385.1\|2269489_2270221_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.5e-109	97.0
WP_001216963.1\|2270280_2270388_+	protein YohO	NA	NA	NA	NA
WP_000783140.1\|2270368_2271100_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569379.1\|2271104_2272031_-	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	7.5e-08	27.3

DBSCAN-SWA_8

2755064 : 2798925

Enterobacteria_phage(41.3%)

protease,terminase,integrase,lysis,portal,plate,tail

attL 2777224:2777238|attR 2797175:2797189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000885617.1\|2755064_2755649_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.8e-100	91.2
WP_000852873.1\|2755648_2757337_-\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	2.0e-59	37.7
WP_000130019.1\|2757329_2757893_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	1.1e-27	41.7
WP_001133967.1\|2757882_2758803_-\|plate	baseplate J/gp47 family protein	A0A088FQL4	Escherichia_phage	2.2e-68	51.5
WP_001014710.1\|2758786_2759140_-	GPW/gp25 family protein	R9TRM1	Vibrio_phage	7.7e-22	48.7
WP_000254605.1\|2759180_2760299_-\|tail	tail protein	D4HTW7	Vibrio_phage	8.1e-33	35.0
WP_001142388.1\|2760300_2760516_-\|tail	tail protein X	NA	NA	NA	NA
WP_000008045.1\|2760490_2760949_-\|tail	phage tail protein	D4HTW5	Vibrio_phage	1.6e-16	34.1
WP_000508975.1\|2760957_2762868_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.3e-25	32.0
WP_000898670.1\|2762970_2763270_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001280988.1\|2763328_2763835_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_000080449.1\|2763831_2765301_-\|tail	phage tail sheath subtilisin-like domain-containing protein	R9TMQ0	Vibrio_phage	2.7e-76	38.0
WP_001280447.1\|2765338_2765956_-\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	1.5e-12	35.4
WP_000830100.1\|2765948_2766500_-	hypothetical protein	NA	NA	NA	NA
WP_000090670.1\|2766510_2767167_-	hypothetical protein	D5LGZ7	Escherichia_phage	1.2e-15	33.8
WP_000526276.1\|2767168_2767525_-	hypothetical protein	NA	NA	NA	NA
WP_000042408.1\|2767524_2767854_-	DUF2190 family protein	NA	NA	NA	NA
WP_001186832.1\|2767925_2770004_-\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	2.4e-203	54.1
WP_015953643.1\|2769960_2771472_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.3e-150	55.9
WP_000167306.1\|2771480_2771696_-	hypothetical protein	NA	NA	NA	NA
WP_001248153.1\|2771692_2773810_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	1.8e-307	71.4
WP_000368263.1\|2773813_2774320_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.9e-48	64.6
WP_000738422.1\|2774912_2775206_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_077626317.1\|2775296_2775479_-	hypothetical protein	K7PHU6	Enterobacteria_phage	2.0e-13	84.5
WP_001135259.1\|2775695_2776193_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	4.2e-90	97.6
WP_000839582.1\|2776192_2776408_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
WP_001146305.1\|2776596_2777328_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
2777224:2777238	attL	NA	NA	NA	NA
WP_000592546.1\|2777677_2778637_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000780581.1\|2778829_2779354_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_001204777.1\|2779508_2779886_-	antitermination protein	Q777W5	Enterobacteria_phage	7.3e-55	84.2
WP_000971076.1\|2779971_2780112_-	YlcG family protein	K7PHH3	Enterobacteria_phage	8.5e-09	69.8
WP_001099519.1\|2780108_2780471_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	3.3e-60	97.4
WP_000774501.1\|2780467_2780758_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	9.6e-47	94.8
WP_000224916.1\|2780750_2780921_-	hypothetical protein	K7P7K0	Enterobacteria_phage	1.5e-12	67.9
WP_001053010.1\|2780920_2781376_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.1e-60	66.9
WP_072096799.1\|2781372_2781474_-	hypothetical protein	NA	NA	NA	NA
WP_000017329.1\|2781563_2782073_-	hypothetical protein	NA	NA	NA	NA
WP_000065088.1\|2783581_2783812_-	hypothetical protein	Q286X0	Escherichia_phage	2.3e-27	78.9
WP_000062289.1\|2783808_2784009_-	hypothetical protein	NA	NA	NA	NA
WP_000145944.1\|2784005_2784299_-	hypothetical protein	A0A0P0ZCJ0	Stx2-converting_phage	1.0e-40	90.3
WP_000788820.1\|2784295_2784997_-	hypothetical protein	A0A0P0ZD31	Stx2-converting_phage	2.7e-127	98.3
WP_001492866.1\|2784993_2785923_-	replication protein	M1FN81	Enterobacteria_phage	1.0e-110	67.6
WP_001182890.1\|2786009_2786549_-	toxin YdaT domain-containing protein	M9NZI6	Enterobacteria_phage	8.9e-62	66.7
WP_000184665.1\|2786579_2786807_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	3.8e-22	69.0
WP_001295669.1\|2786917_2787610_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.5e-109	86.1
WP_000741702.1\|2787739_2788879_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_000581649.1\|2788875_2789388_+	DUF4411 family protein	NA	NA	NA	NA
WP_000233576.1\|2789866_2790073_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995439.1\|2790148_2790445_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000100847.1\|2790450_2791236_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186796.1\|2791232_2791913_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	6.7e-131	98.7
WP_000682308.1\|2791909_2792071_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	1.2e-22	100.0
WP_000129280.1\|2792063_2792621_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	5.4e-62	62.9
WP_077626318.1\|2792631_2792913_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	2.5e-44	95.7
WP_000763364.1\|2793011_2793230_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	1.8e-34	95.8
WP_000488407.1\|2793277_2793556_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000023575.1\|2793848_2795009_+\|integrase	site-specific integrase	K7P7R5	Enterobacteria_phage	1.2e-228	100.0
WP_000893302.1\|2795213_2796467_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.5e-93	46.5
WP_001285289.1\|2796478_2797582_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	8.2e-62	40.4
2797175:2797189	attR	NA	NA	NA	NA
WP_015953653.1\|2797869_2798925_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-117	60.6

DBSCAN-SWA_9

4144641 : 4239215

Burkholderia_phage(32.0%)

tRNA,plate,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000499772.1\|4144641_4146531_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_000763745.1\|4146909_4147353_-	FMN-binding protein MioC	NA	NA	NA	NA
WP_000432970.1\|4147442_4147901_-	transcriptional regulator AsnC	NA	NA	NA	NA
WP_000845109.1\|4148052_4149045_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	3.8e-50	37.7
WP_000956659.1\|4149049_4150501_-	ATPase RavA stimulator ViaA	NA	NA	NA	NA
WP_000940971.1\|4150494_4151991_-	ATPase RavA	NA	NA	NA	NA
WP_000102682.1\|4152212_4154081_+	low affinity potassium transporter Kup	M1I6H8	Paramecium_bursaria_Chlorella_virus	6.0e-65	30.6
WP_000715936.1\|4154247_4154667_+	D-ribose pyranase	NA	NA	NA	NA
WP_000387771.1\|4154674_4156180_+	ribose ABC transporter ATP-binding protein RbsA	G3M9Y6	Bacillus_virus	5.1e-14	27.7
WP_000211851.1\|4156184_4157150_+	ribose ABC transporter permease	NA	NA	NA	NA
WP_001056273.1\|4157174_4158065_+	ribose ABC transporter substrate-binding protein RbsB	C6ZCU4	Enterobacteria_phage	4.3e-05	23.4
WP_001361088.1\|4158190_4159120_+	ribokinase	NA	NA	NA	NA
WP_015953906.1\|4159123_4160116_+	ribose operon transcriptional repressor RbsR	NA	NA	NA	NA
WP_001131158.1\|4160156_4160861_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_000237010.1\|4166476_4166920_-	acetyltransferase	NA	NA	NA	NA
WP_001122791.1\|4167076_4168006_+	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_001075631.1\|4168274_4169876_+	malate synthase A	NA	NA	NA	NA
WP_000857847.1\|4169905_4171210_+	isocitrate lyase	NA	NA	NA	NA
WP_001137284.1\|4171258_4172992_+	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
WP_072271684.1\|4173082_4174474_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	2.9e-104	50.4
WP_000226428.1\|4174521_4175346_-	glyoxylate bypass operon transcriptional repressor IclR	NA	NA	NA	NA
WP_000096028.1\|4175545_4179229_+	methionine synthase	A0A140XBC7	Dickeya_phage	2.9e-26	88.5
WP_000590029.1\|4179288_4179609_+	hypothetical protein	NA	NA	NA	NA
WP_001189568.1\|4179651_4180101_+	hypothetical protein	NA	NA	NA	NA
WP_000956838.1\|4180271_4181903_+	Na/Pi cotransporter family protein	NA	NA	NA	NA
WP_000164234.1\|4182004_4182544_+	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_001195085.1\|4182696_4183917_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_000437889.1\|4183970_4184795_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_000406329.1\|4184805_4185603_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
WP_001027841.1\|4185670_4186162_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000245619.1\|4186161_4186569_-	PTS sorbose transporter subunit IIA	NA	NA	NA	NA
WP_001192383.1\|4186578_4187373_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000257635.1\|4187442_4188396_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_000936340.1\|4188744_4189617_+	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA
WP_001201929.1\|4189617_4189842_-	DUF3811 domain-containing protein	NA	NA	NA	NA
WP_000227796.1\|4189892_4191035_-	lipopolysaccharide N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_001207638.1\|4192209_4192482_-	DUF3811 domain-containing protein	NA	NA	NA	NA
WP_000592038.1\|4193011_4194139_+	slipin family protein	NA	NA	NA	NA
WP_001122142.1\|4194144_4194936_+	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	1.1e-47	45.9
WP_000471230.1\|4194965_4195694_-	hypothetical protein	NA	NA	NA	NA
WP_002431754.1\|4195907_4196363_-	hypothetical protein	F6MIM0	Haemophilus_phage	2.3e-26	43.3
WP_001091606.1\|4196359_4197067_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000135571.1\|4197063_4198644_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	3.7e-84	40.5
WP_000359521.1\|4198643_4199363_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.9e-22	37.2
WP_000951748.1\|4199355_4200471_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.5e-100	51.7
WP_001093497.1\|4200461_4200821_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.1e-34	63.3
WP_000679386.1\|4200919_4201621_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	1.1e-11	40.0
WP_000808051.1\|4201630_4202671_-	phage late control D family protein	A4JWL3	Burkholderia_virus	3.9e-74	45.4
WP_001269713.1\|4202658_4202868_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	5.7e-17	61.8
WP_000271437.1\|4202867_4203821_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	4.3e-35	50.8
WP_001262475.1\|4203820_4206196_-\|tail	tail protein	A4JWL0	Burkholderia_virus	8.5e-56	27.4
WP_015953918.1\|4206296_4206425_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000658216.1\|4206384_4206702_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907502.1\|4206752_4207277_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
WP_000729836.1\|4207276_4208701_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	9.2e-191	70.0
WP_000875309.1\|4208690_4208888_-	hypothetical protein	NA	NA	NA	NA
WP_000404766.1\|4208884_4209340_-	hypothetical protein	NA	NA	NA	NA
WP_000777271.1\|4209457_4209772_-	hypothetical protein	Q6QIC4	Burkholderia_phage	7.1e-19	47.2
WP_000266450.1\|4209784_4210390_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-57	56.6
WP_000724378.1\|4210392_4210680_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.6
WP_000619863.1\|4211217_4211562_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	6.3e-21	47.6
WP_000212698.1\|4211733_4212663_-	zeta toxin family protein	NA	NA	NA	NA
WP_001112915.1\|4212807_4214157_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000790002.1\|4214449_4216099_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000757333.1\|4216453_4216696_+	polysaccharide production threonine-rich protein	NA	NA	NA	NA
WP_015953922.1\|4216810_4217449_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000595511.1\|4217445_4218183_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_000745723.1\|4218182_4220279_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_000202902.1\|4220399_4220810_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000107424.1\|4220853_4222329_-	D-xylose transporter XylE	NA	NA	NA	NA
WP_001252083.1\|4222717_4223608_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_015953923.1\|4223620_4225165_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695373.1\|4225318_4226509_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179181.1\|4226886_4228002_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	9.6e-18	31.7
WP_000989133.1\|4228076_4229417_+	maltoporin	NA	NA	NA	NA
WP_000782489.1\|4229523_4230456_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000019212.1\|4230633_4231131_+	chorismate lyase	NA	NA	NA	NA
WP_000455219.1\|4231143_4232016_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017352.1\|4232072_4234493_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002903.1\|4234663_4235032_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646099.1\|4235141_4235750_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000874974.1\|4235822_4237148_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001030605.1\|4237279_4237489_+	CsbD family protein	NA	NA	NA	NA
WP_000426182.1\|4237539_4238055_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001272044.1\|4238219_4239215_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

DBSCAN-SWA_10

4513202 : 4560278

Enterobacteria_phage(44.68%)

protease,terminase,integrase,holin,portal,tail

attL 4512011:4512025|attR 4521326:4521340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4512011:4512025	attL	NA	NA	NA	NA
WP_001218281.1\|4513202_4514426_+\|integrase	site-specific integrase	A5LH57	Enterobacteria_phage	9.5e-237	99.0
WP_001317460.1\|4514686_4515019_-	FlxA-like family protein	NA	NA	NA	NA
WP_071821821.1\|4515221_4515497_-	hypothetical protein	NA	NA	NA	NA
WP_000008231.1\|4515731_4516268_-	5'-deoxynucleotidase	S5MW55	Escherichia_phage	5.3e-99	98.3
WP_000081304.1\|4516396_4517221_-	YfdQ family protein	U5P439	Shigella_phage	9.5e-148	98.9
WP_000135674.1\|4517286_4517649_-	hypothetical protein	Q8SBF8	Shigella_phage	1.1e-60	99.2
WP_000559917.1\|4518118_4518634_+	hypothetical protein	NA	NA	NA	NA
WP_000450739.1\|4518861_4519488_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	2.5e-47	48.8
WP_000205495.1\|4519586_4519787_+	cell division protein	NA	NA	NA	NA
WP_048814586.1\|4519824_4520376_+	hypothetical protein	S5FXP0	Shigella_phage	4.2e-99	96.7
WP_001250269.1\|4520551_4520731_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104982.1\|4520720_4521662_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.2e-139	91.1
4521326:4521340	attR	NA	NA	NA	NA
WP_015953975.1\|4521658_4522153_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.1e-85	97.5
WP_000210160.1\|4522152_4522479_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	1.0e-52	98.1
WP_000767113.1\|4522475_4522865_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_001061398.1\|4522884_4523682_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	9.8e-150	99.2
WP_024256582.1\|4523689_4524679_+	DUF968 domain-containing protein	S5FV02	Shigella_phage	1.2e-194	99.4
WP_001047084.1\|4524692_4525445_+	antitermination protein	K7PGU5	Enterobacteria_phage	1.1e-131	96.4
WP_000087756.1\|4525860_4526073_-	cold shock-like protein CspF	NA	NA	NA	NA
WP_000066482.1\|4526375_4526591_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	2.6e-25	76.5
WP_000839581.1\|4527343_4527559_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	7.9e-30	90.1
WP_000189905.1\|4527563_4528115_+	YdfR family protein	Q08JA0	Stx2-converting_phage	1.9e-35	51.1
WP_001306174.1\|4528062_4528323_-	hypothetical protein	NA	NA	NA	NA
WP_001101174.1\|4528436_4528970_+	lysozyme	K7PLY1	Enterobacteria_phage	3.2e-96	93.2
WP_001071778.1\|4528966_4529464_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_000066495.1\|4529827_4530040_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071528545.1\|4530050_4530239_+	cold-shock protein	NA	NA	NA	NA
WP_001443523.1\|4530385_4530541_+	hypothetical protein	NA	NA	NA	NA
WP_024256583.1\|4530713_4530887_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000548593.1\|4531182_4531389_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_000349509.1\|4531941_4532433_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
WP_000934084.1\|4532432_4534535_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	97.0
WP_001072975.1\|4534531_4534744_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_015953980.1\|4534671_4536252_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	4.3e-290	100.0
WP_077626326.1\|4536196_4538224_+\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.5
WP_001097050.1\|4538310_4538634_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001283153.1\|4538626_4538902_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_000677109.1\|4538913_4539492_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	4.7e-101	99.5
WP_001079398.1\|4539488_4539890_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000211109.1\|4539901_4540645_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
WP_001300035.1\|4540705_4541092_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
WP_001161009.1\|4541100_4541430_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_000372016.1\|4541401_4544467_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.8
WP_000447253.1\|4544466_4544796_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152389.1\|4544805_4545504_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	3.0e-134	99.6
WP_000140749.1\|4545509_4546253_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.2e-151	99.2
WP_000741577.1\|4546150_4546798_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.1e-111	97.2
WP_000515509.1\|4546858_4550347_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	86.9
WP_001233184.1\|4550414_4551014_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.6e-99	88.9
WP_000279178.1\|4551078_4554453_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3GML4	Enterobacteria_phage	1.4e-11	35.5
WP_000874134.1\|4554452_4555028_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-98	91.1
WP_000086511.1\|4555125_4555716_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.2e-24	38.3
WP_000836769.1\|4556095_4556329_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	6.4e-33	88.3
WP_001372053.1\|4556397_4556511_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	1.4e-06	77.8
WP_001217539.1\|4556937_4557186_-	DinI-like family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_000202563.1\|4557405_4558992_+	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.4e-30	25.2
WP_001295410.1\|4559384_4559990_+	molecular chaperone OsmY	NA	NA	NA	NA
WP_000490275.1\|4560116_4560278_+	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011740

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection