CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011748	Escherichia coli 55989, complete genome	4 crisprs	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL	0	14	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011748_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011748_1

579161-579257

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011748_1

>merge|NC_011748|1|579161-579257|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NC_011748|1|1|579161-579257|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011748.1\|WP_001143543.1\|583826_584348_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NC_011748.1\|WP_000006887.1\|567040_568402_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NC_011748.1\|WP_000912345.1\|582405_583791_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_011748.1\|WP_000540946.1\|571055_571841_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|225796
NC_011748.1\|WP_000255997.1\|581737_582232_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NC_011748.1\|WP_000190288.1\|584455_584668_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NC_011748.1\|WP_000495400.1\|576151_577411_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NC_011748.1\|WP_000815551.1\|579321_580389_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_011748.1\|WP_000729154.1\|584669_585536_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NC_011748.1\|WP_000580807.1\|574474_576142_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NC_011748.1\|WP_001295318.1\|580385_580895_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NC_011748.1\|WP_001306952.1\|577421_578237_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NC_011748.1\|WP_000212252.1\|581012_581735_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NC_011748.1\|WP_001298987.1\|568458_569760_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NC_011748.1\|WP_000855388.1\|578233_579127_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NC_011748.1\|WP_000776555.1\|586016_586559_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NC_011748.1\|WP_000706355.1\|569781_570927_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NC_011748.1\|WP_000988366.1\|586778_587471_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NC_011748.1\|WP_001306951.1\|571851_573087_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NC_011748.1\|WP_000703879.1\|573108_574158_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985

Protein	Function_ID	Function_description	E-value
NC_011748.1\|WP_001143543.1\|583826_584348_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	7.12373e-31
NC_011748.1\|WP_000006887.1\|567040_568402_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NC_011748.1\|WP_000912345.1\|582405_583791_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_011748.1\|WP_000540946.1\|571055_571841_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|225796	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only].	4.36926e-152
NC_011748.1\|WP_000255997.1\|581737_582232_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NC_011748.1\|WP_000190288.1\|584455_584668_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NC_011748.1\|WP_000495400.1\|576151_577411_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.67788e-130
NC_011748.1\|WP_000815551.1\|579321_580389_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.30115e-179
NC_011748.1\|WP_000729154.1\|584669_585536_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NC_011748.1\|WP_000580807.1\|574474_576142_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NC_011748.1\|WP_001295318.1\|580385_580895_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NC_011748.1\|WP_001306952.1\|577421_578237_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.28312e-37
NC_011748.1\|WP_000212252.1\|581012_581735_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
NC_011748.1\|WP_001298987.1\|568458_569760_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NC_011748.1\|WP_000855388.1\|578233_579127_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NC_011748.1\|WP_000776555.1\|586016_586559_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
NC_011748.1\|WP_000706355.1\|569781_570927_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NC_011748.1\|WP_000988366.1\|586778_587471_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.84958e-149
NC_011748.1\|WP_001306951.1\|571851_573087_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NC_011748.1\|WP_000703879.1\|573108_574158_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0

>NC_011748.1|WP_000855388.1|578233_579127_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NC_011748.1|WP_001306952.1|577421_578237_+|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWMLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NC_011748.1|WP_000495400.1|576151_577411_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNPGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMEHGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NC_011748.1|WP_000580807.1|574474_576142_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTDFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLMENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NC_011748.1|WP_000703879.1|573108_574158_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAEQNGVAVVGISRMGHSGAISYFVQQAARAGLIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPLAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NC_011748.1|WP_001306951.1|571851_573087_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCESEKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NC_011748.1|WP_000540946.1|571055_571841_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYRDDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NC_011748.1|WP_000706355.1|569781_570927_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NC_011748.1|WP_001298987.1|568458_569760_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NC_011748.1|WP_000006887.1|567040_568402_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NC_011748.1|WP_000815551.1|579321_580389_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFERLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNSPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NC_011748.1|WP_001295318.1|580385_580895_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NC_011748.1|WP_000212252.1|581012_581735_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NC_011748.1|WP_000255997.1|581737_582232_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NC_011748.1|WP_000912345.1|582405_583791_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NC_011748.1|WP_001143543.1|583826_584348_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLICCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>NC_011748.1|WP_000190288.1|584455_584668_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NC_011748.1|WP_000729154.1|584669_585536_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NC_011748.1|WP_000776555.1|586016_586559_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NC_011748.1|WP_000988366.1|586778_587471_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Crispr_ID: NC_011748_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011748_2

2697313-2697401

Orphan

Consensus_repeat	Method
CGTTGGACAACCGTTGGACAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011748_2

>merge|NC_011748|2|2697313-2697401|CRISPRCasFinder
TTATGGACAACCGTTGGACAACCGTTGGACAATCTCCGCTGAGATCCGCGCCATTACTGGTGTTTGCGTTGGACAACCGTTGGACAACC

>NC_011748|2|2|2697313-2697401|CRISPRCasFinder
TTATGGACAACCGTTGGACAACC	GTTGGACAATCTCCGCTGAGATCCGCGCCATTACTGGTGTTTG
CGTTGGACAACCGTTGGACAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011748.1\|WP_000856967.1\|2698631_2699282_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
NC_011748.1\|WP_000344570.1\|2694865_2695180_-\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_000050554.1\|2701272_2701443_+\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_000131505.1\|2695479_2696916_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NC_011748.1\|WP_000002235.1\|2692904_2693195_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NC_011748.1\|WP_000167595.1\|2700361_2700832_+\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_001008199.1\|2692545_2692908_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NC_011748.1\|WP_000994516.1\|2692360_2692549_-\|protein-ninH	unknown	unknown	gnl\|CDD\|283883
NC_011748.1\|WP_000424164.1\|2697978_2698257_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|336083
NC_011748.1\|WP_001254251.1\|2694076_2694259_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NC_011748.1\|WP_000807325.1\|2695197_2695404_-\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_000566861.1\|2693909_2694080_-\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NC_011748.1\|WP_000276886.1\|2698365_2698551_-\|Cro/Cl-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|373126
NC_011748.1\|WP_000814617.1\|2694255_2694666_-\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NC_011748.1\|WP_000219331.1\|2700053_2700353_+\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_000166961.1\|2697782_2697944_-\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_000951329.1\|2702058_2702442_+\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_001003987.1\|2693194_2693917_-\|phage-antirepressor-KilAC-domain-containing-protein	unknown	unknown	gnl\|CDD\|226171
NC_011748.1\|WP_000031367.1\|2701453_2702059_+\|ERF-family-protein	unknown	unknown	gnl\|CDD\|377346
NC_011748.1\|WP_001183771.1\|2701026_2701197_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011748.1\|WP_000856967.1\|2698631_2699282_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	1.53208e-37
NC_011748.1\|WP_000994516.1\|2692360_2692549_-\|protein-ninH	gnl\|CDD\|283883	pfam06322, Phage_NinH, Phage NinH protein. This family consists of several phage NinH proteins. The function of this family is unknown.	7.68087e-23
NC_011748.1\|WP_000131505.1\|2695479_2696916_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NC_011748.1\|WP_000002235.1\|2692904_2693195_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	1.01266e-49
NC_011748.1\|WP_000424164.1\|2697978_2698257_-\|transcriptional-regulator	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	6.54898e-38
NC_011748.1\|WP_000566861.1\|2693909_2694080_-\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	3.20189e-15
NC_011748.1\|WP_001254251.1\|2694076_2694259_-\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	1.63787e-22
NC_011748.1\|WP_001008199.1\|2692545_2692908_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	4.00861e-41
NC_011748.1\|WP_000276886.1\|2698365_2698551_-\|Cro/Cl-family-transcriptional-regulator	gnl\|CDD\|373126	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro. Bacteriophage P22 Cro protein represses genes normally expressed in early phage development and is necessary for the late stage of lytic growth. It does this by binding to the OL and OR operator-regions normally used by the repressor protein for lysogenic maintenance.	4.0721e-24
NC_011748.1\|WP_000814617.1\|2694255_2694666_-\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	1.05372e-58
NC_011748.1\|WP_001003987.1\|2693194_2693917_-\|phage-antirepressor-KilAC-domain-containing-protein	gnl\|CDD\|226171	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown].	8.66077e-49
NC_011748.1\|WP_000031367.1\|2701453_2702059_+\|ERF-family-protein	gnl\|CDD\|377346	pfam04404, ERF, ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	6.20094e-42

>NC_011748.1|WP_000131505.1|2695479_2696916_-|AAA-family-ATPase
MTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVRKVLAMLKPDSFYSRPHKIIFDEITRMHREQKPVDGLTLFDELERKSLTASVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
>NC_011748.1|WP_000807325.1|2695197_2695404_-|hypothetical-protein
MAEFMLVAFKCVGVGWILLTFFIVLHSYIRLVNDGKDPWYTLFGAAFVWVIIGVMPVVVAKMAWRFVS
>NC_011748.1|WP_000344570.1|2694865_2695180_-|hypothetical-protein
MDESRKQFEEYVAKKLRLPFEMITEARNGDRYFAFSSMDIRHSLNEWWALWQASRAAIEIIAPKFIDSREALAKGFTVDYSNGFGDAMDAYEENIRAAGIKVKE
>NC_011748.1|WP_000814617.1|2694255_2694666_-|recombination-protein-NinB
MKQTIFLRTKQQQQAAINAILATPLDKDKPVTIRITDYKRNLDQNAKFHAMVADIARQVQWRDKWLKPEQWKVLLISGHAVATKQEADVLPGLEGEYVNIRESSAQMSVKRMASLIEYTTAWAIGQGVRFTDRRYE
>NC_011748.1|WP_001254251.1|2694076_2694259_-|NinE-family-protein
MRRQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRERARKTR
>NC_011748.1|WP_000566861.1|2693909_2694080_-|protein-ninF
MIDPNRSYEQESVERALTCANCGQKLHMLEVHVCSDCCAELMSDPNSSMYEEEDDE
>NC_011748.1|WP_001003987.1|2693194_2693917_-|phage-antirepressor-KilAC-domain-containing-protein
MNELINGNAIKMTSIEIAELVGKRHDNVKRTIETLAKNGVIRLPQIEVSERINNLGFNVQYEHYVFEGEQGKRDSIVVVAQLSPEFTARLVDRWRELEEAAVNIPKTLPEALRLAADLAEQKMQLENQLAIAAPKVEFADRVGEASGILIGNYAKVVGIGPNKLFAWMRDHKILIASGSRRNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA
>NC_011748.1|WP_000002235.1|2692904_2693195_-|DUF1364-domain-containing-protein
MANLRKEARGRECQVRIYGICNGNPETTVLAHYRMAGICGTGMKPEDLIGAWACSACHDEIDRRTHNLDNKDARLYHLEGVIRTQAILLKEGKIKS
>NC_011748.1|WP_001008199.1|2692545_2692908_-|RusA-family-crossover-junction-endodeoxyribonuclease
MNEYQFVLPYPPSVNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVIADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELENA
>NC_011748.1|WP_000994516.1|2692360_2692549_-|protein-ninH
MNATIQTIPELLIQTRGNQTEVARMLSCARGTVLKYNRDSKGERHVIVNGVLMVKQGKRGRR
>NC_011748.1|WP_000166961.1|2697782_2697944_-|hypothetical-protein
MTKRRKKYQEKEEIRHPDSPEGLVVAAANNRAFAERLVGVYRLAKAGVKHGRR
>NC_011748.1|WP_000424164.1|2697978_2698257_-|transcriptional-regulator
MELTSTRKKANAITSNILNRIAVRGQRKVADALGINESQISRWKDSFIPKMGMLLAVLEWGVEDEELAELAKKVARMLTKEKAPKNGEFFEA
>NC_011748.1|WP_000276886.1|2698365_2698551_-|Cro/Cl-family-transcriptional-regulator
MYKKDVIDHFGTQRAVAKALGISDAAVSQWKEVIPEKDAYRLEVVTAGALKYQESAYRKAA
>NC_011748.1|WP_000856967.1|2698631_2699282_+|LexA-family-transcriptional-regulator
MKTQLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDYLMKGEESLSNIAYHSRHDPRGSYPLISWVSAGCWMEAVEPYHKRAIDNWYDTTVDCSEDSFWLDVKGDSMTAPAGLSIPEGMIILVDPEVEPRNGKLVVAKLEGENEATFKKLVIDAGRKFLKPLNPQYPMIEINGNCKIIGVVVDAKLANLP
>NC_011748.1|WP_000219331.1|2700053_2700353_+|hypothetical-protein
MTVVITYLADDNARNRRRAHRQAQREQAMQEQRLARKIALKLSGCVRADKAASLGSLRCKKAEEVESKQNRIYYRKPRSEMGVTCVGRQKMKLGSKPLI
>NC_011748.1|WP_000167595.1|2700361_2700832_+|hypothetical-protein
MTKSWSVPFPESETEHDGMPVFWRFQATVEEDGIKIFALQYIAFHQTEHYAWLVPAHWIVNFKPAPNQWLQEWKQRRNRYAIKKVAKNAERSFAFPTKKLAIESLLRRKKYHLMRIKQDLAVVSTLVDGMKNIDTSTPDIEYNFGHNQETENWVFY
>NC_011748.1|WP_001183771.1|2701026_2701197_+|hypothetical-protein
MQQFAIAGAASVRPFNPILSVQHSRKNILTGADFKQPRMKSLLEKLWDILKQQGRP
>NC_011748.1|WP_000050554.1|2701272_2701443_+|hypothetical-protein
MSLATTVKESKLQRRMYTQQALMYRQKGDREGVRVFLNAAKTEVLNQRYFLGPCPF
>NC_011748.1|WP_000031367.1|2701453_2702059_+|ERF-family-protein
MSKEFYARLAAIQENLNAPKNQYNSFGKYKYRSCEDILEGVKPLLNGLFLSISDEVVLIGDRYYVKATATITDGENSHTATALAREEESKKGMDSAQVTGATSSYARKYCLNGLFGIDDAKDADTDEHKHQQNAAAKQSKPSPTPEQVLKAFTDAALQKNTVEELKQAFAKAWKMLEGTPEQHKAQDVYNIRRDELEGAAA
>NC_011748.1|WP_000951329.1|2702058_2702442_+|hypothetical-protein
MAHSITVRLNKPAREFQAGENIGFNIRAGVQYYDRQTKKKEWTNYSTVVFAKPGAQADYYRSVLVEGGIVEITGENIRVDVYQGQNGQSITLELLNAKIGFATSGNSPQQQSSNQQNTPVYDDSIPF

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Crispr_ID: NC_011748_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011748_3

3094212-3094301

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

1 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_011748_3

>merge|NC_011748|3|3094212-3094301|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACACCTGAAACCAGTTGGCTCGTTGTTCTTCTTTGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011748|3|3|3094212-3094301|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGAAACCAGTTGGCTCGTTGTTCTTCTTTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011748.1\|WP_000490426.1\|3093092_3094130_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_011748.1\|WP_000029329.1\|3098063_3098600_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_011748.1\|WP_001090348.1\|3090503_3091931_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_011748.1\|WP_000144875.1\|3094690_3095611_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011748.1\|WP_000372108.1\|3091932_3092841_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_011748.1\|WP_000039843.1\|3103566_3104301_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011748.1\|WP_000956458.1\|3103149_3103302_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NC_011748.1\|WP_001219242.1\|3087812_3088292_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_011748.1\|WP_001084093.1\|3098596_3100159_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011748.1\|WP_001295182.1\|3086024_3086786_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_011748.1\|WP_000517476.1\|3089020_3089332_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_011748.1\|WP_001173673.1\|3089898_3090504_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_011748.1\|WP_001233957.1\|3100256_3102956_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_011748.1\|WP_000568956.1\|3086766_3087816_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_011748.1\|WP_001246104.1\|3089525_3089849_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_011748.1\|WP_000281434.1\|3095607_3096258_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_011748.1\|WP_000246138.1\|3088291_3089002_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_011748.1\|WP_000085069.1\|3096239_3096986_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_011748.1\|WP_000206433.1\|3096996_3098052_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NC_011748.1\|WP_000063179.1\|3094397_3094691_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
NC_011748.1\|WP_000490426.1\|3093092_3094130_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_011748.1\|WP_000029329.1\|3098063_3098600_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NC_011748.1\|WP_001090348.1\|3090503_3091931_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_011748.1\|WP_000144875.1\|3094690_3095611_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.70125e-157
NC_011748.1\|WP_000372108.1\|3091932_3092841_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_011748.1\|WP_000039843.1\|3103566_3104301_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NC_011748.1\|WP_000956458.1\|3103149_3103302_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NC_011748.1\|WP_001219242.1\|3087812_3088292_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NC_011748.1\|WP_001084093.1\|3098596_3100159_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011748.1\|WP_001295182.1\|3086024_3086786_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NC_011748.1\|WP_000517476.1\|3089020_3089332_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NC_011748.1\|WP_001173673.1\|3089898_3090504_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NC_011748.1\|WP_001233957.1\|3100256_3102956_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.04462e-175
NC_011748.1\|WP_000568956.1\|3086766_3087816_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_011748.1\|WP_001246104.1\|3089525_3089849_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NC_011748.1\|WP_000281434.1\|3095607_3096258_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	5.16907e-91
NC_011748.1\|WP_000246138.1\|3088291_3089002_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NC_011748.1\|WP_000085069.1\|3096239_3096986_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.67461e-49
NC_011748.1\|WP_000206433.1\|3096996_3098052_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.3024e-155
NC_011748.1\|WP_000063179.1\|3094397_3094691_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.5781e-65

>NC_011748.1|WP_000490426.1|3093092_3094130_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NC_011748.1|WP_000372108.1|3091932_3092841_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NC_011748.1|WP_001090348.1|3090503_3091931_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NC_011748.1|WP_001173673.1|3089898_3090504_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NC_011748.1|WP_001246104.1|3089525_3089849_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NC_011748.1|WP_000517476.1|3089020_3089332_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NC_011748.1|WP_000246138.1|3088291_3089002_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NC_011748.1|WP_001219242.1|3087812_3088292_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NC_011748.1|WP_000568956.1|3086766_3087816_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPELSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NC_011748.1|WP_001295182.1|3086024_3086786_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NC_011748.1|WP_000063179.1|3094397_3094691_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGKNRRIPVDLDGLRLVSFLPVDNQ
>NC_011748.1|WP_000144875.1|3094690_3095611_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLINKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRG
>NC_011748.1|WP_000281434.1|3095607_3096258_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQARPAESETFTIECRPFVSELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVKGQAEGRDIWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENTRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NC_011748.1|WP_000085069.1|3096239_3096986_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHEGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NC_011748.1|WP_000206433.1|3096996_3098052_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWSAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQSSEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NC_011748.1|WP_000029329.1|3098063_3098600_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NC_011748.1|WP_001084093.1|3098596_3100159_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKNHGRWDDIWEDGLEAEKLREALLSLEHAFQFGADSPSFMQDFEALKGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWPNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLKKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NC_011748.1|WP_001233957.1|3100256_3102956_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQESARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKALFPRIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAQAMDIKHYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLIAAGKAHGLFFGLPTMATANAMYDRLVKTWLSFYSPESRPSLVLAHSARTLMDRFNESLWSGDLIGSEEPDEQAFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVG
>NC_011748.1|WP_000956458.1|3103149_3103302_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NC_011748.1|WP_000039843.1|3103566_3104301_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NC_011748_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011748_4

3120001-3120944

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

15 spacers

The CRISPR arrays of NC_011748_4

>merge|NC_011748|4|3120001-3120944|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCACGGGGAACTCGCCTGACATTGCAGACGTTACAAATTGAGAGGCGGTTTATCCCCGCTGGCGCGGGGAACTCTAATCACGTTTTAGCGCGCCCTCGTCCGGTTTCGGTTTATCCCCGCTGGCGCGGGGAACTCATCTTCTTGTTCAGGAACGTCAGTAGAGGTGTCGGTTTATCCCCGCTGGCGCGGGGAACTCTAATCACGTTTTAGCGCGCCCTCGTCCGGTTTCGGTTTATCCCCGCTGGCGCGGGGAACTCATCTTCTTGTTCAGGAACGTCAGTAGAGGTGTCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCATTAACCCCCACCAGCTCGACGTGTGTGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGGGCGTTAACGCGGTGATACTGTTTGACGGCGGTTTATCCCCGCTGGCGCGGGGAACTCACCGAGCGCCGCTGGGAGGCGTATCTCACGTTCGGTTTATCCCCGCTGGCGCGGGGAACTCTGAATGATCGGAAAGACGCTGCAAAGGCAATGCGGTTTATCCCCGCTGGCGCGGGGAACTCATTAAAGGATTATTTTGATGAGTCTGAAAAATCGGTTTATCCCCGCTGGCGCGGGGAACTCTGATTTTGGTGGCGGGGGTGACTGGGGGAATACGGTTTATCCCCGCTGGCGCGGGGAACTCTACCGGTGTGAATTACAGCACCACCGCCACCCCGGTTTATCCCCGCTGGCGCGGGGAACTCCAAACAGGTCGACATGTTTGGCTAACAGCTAACGGTTTATCCCCGCTGGCGCGGGGAACTCCGATAACACAGGGCCGTCAATGCGGCCCTTTTCGGTTTATCCCCGCTGGCGCGGGGAACTCATACCGGGTTTTGCTCCAGCAGCGCCAGTTCCTGGTTTATCCCCGCTGGCGCGGGGAACTC

>NC_011748|4|4|3120001-3120944|CRISPRCasFinder
TGGTTTATCCCCGCTGGCACGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCATTAACCCCCACCAGCTCGACGTGTGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACCGAGCGCCGCTGGGAGGCGTATCTCACGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGAATGATCGGAAAGACGCTGCAAAGGCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATTAAAGGATTATTTTGATGAGTCTGAAAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGATTTTGGTGGCGGGGGTGACTGGGGGAATA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCGGTGTGAATTACAGCACCACCGCCACCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAAACAGGTCGACATGTTTGGCTAACAGCTAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGATAACACAGGGCCGTCAATGCGGCCCTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATACCGGGTTTTGCTCCAGCAGCGCCAGTTCC
TGGTTTATCCCCGCTGGCGCGGGGAACTC

>NC_011748|4|1|3120001-3120944|CRT
TGGTTTATCCCCGCTGGCACGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATCACGTTTTAGCGCGCCCTCGTCCGGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCATTAACCCCCACCAGCTCGACGTGTGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACCGAGCGCCGCTGGGAGGCGTATCTCACGTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGAATGATCGGAAAGACGCTGCAAAGGCAATG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATTAAAGGATTATTTTGATGAGTCTGAAAAAT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGATTTTGGTGGCGGGGGTGACTGGGGGAATA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TACCGGTGTGAATTACAGCACCACCGCCACCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CAAACAGGTCGACATGTTTGGCTAACAGCTAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CGATAACACAGGGCCGTCAATGCGGCCCTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATACCGGGTTTTGCTCCAGCAGCGCCAGTTCC
TGGTTTATCCCCGCTGGCGCGGGGAACTC

>NC_011748|4|1|3120002-3120944|PILER-CR
GGTTTATCCCCGCTGGCACGGGGAACTC	GCCTGACATTGCAGACGTTACAAATTGAGAGGC
GGTTTATCCCCGCTGGCGCGGGGAACTC	TAATCACGTTTTAGCGCGCCCTCGTCCGGTTTC
GGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGTC
GGTTTATCCCCGCTGGCGCGGGGAACTC	TAATCACGTTTTAGCGCGCCCTCGTCCGGTTTC
GGTTTATCCCCGCTGGCGCGGGGAACTC	ATCTTCTTGTTCAGGAACGTCAGTAGAGGTGTC
GGTTTATCCCCGCTGGCGCGGGGAACTC	AGCATTAACCCCCACCAGCTCGACGTGTGTGGC
GGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGCGTTAACGCGGTGATACTGTTTGACGGC
GGTTTATCCCCGCTGGCGCGGGGAACTC	ACCGAGCGCCGCTGGGAGGCGTATCTCACGTTC
GGTTTATCCCCGCTGGCGCGGGGAACTC	TGAATGATCGGAAAGACGCTGCAAAGGCAATGC
GGTTTATCCCCGCTGGCGCGGGGAACTC	ATTAAAGGATTATTTTGATGAGTCTGAAAAATC
GGTTTATCCCCGCTGGCGCGGGGAACTC	TGATTTTGGTGGCGGGGGTGACTGGGGGAATAC
GGTTTATCCCCGCTGGCGCGGGGAACTC	TACCGGTGTGAATTACAGCACCACCGCCACCCC
GGTTTATCCCCGCTGGCGCGGGGAACTC	CAAACAGGTCGACATGTTTGGCTAACAGCTAAC
GGTTTATCCCCGCTGGCGCGGGGAACTC	CGATAACACAGGGCCGTCAATGCGGCCCTTTTC
GGTTTATCCCCGCTGGCGCGGGGAACTC	ATACCGGGTTTTGCTCCAGCAGCGCCAGTTCCT
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011748.1\|WP_001299097.1\|3110906_3111767_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NC_011748.1\|WP_000210878.1\|3124565_3126203_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_011748.1\|WP_001071648.1\|3126430_3127222_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_011748.1\|WP_000147666.1\|3112520_3113930_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NC_011748.1\|WP_000109532.1\|3109906_3110167_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NC_011748.1\|WP_000098237.1\|3135357_3136698_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NC_011748.1\|WP_000226815.1\|3127953_3130188_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_011748.1\|WP_001130266.1\|3110183_3110759_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NC_011748.1\|WP_000046785.1\|3130235_3131537_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NC_011748.1\|WP_000039681.1\|3117883_3119362_+\|kinase	unknown	unknown	gnl\|CDD\|212662
NC_011748.1\|WP_000254745.1\|3127292_3127628_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NC_011748.1\|WP_000059312.1\|3113951_3115406_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_011748.1\|WP_000581937.1\|3127627_3127876_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NC_011748.1\|WP_001288227.1\|3122093_3122234_+\|hypothetical-protein	unknown	unknown	unknown
NC_011748.1\|WP_000036723.1\|3123179_3124478_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_011748.1\|WP_000021321.1\|3115475_3116261_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NC_011748.1\|WP_001199973.1\|3121283_3121955_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_011748.1\|WP_001299652.1\|3111763_3112543_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NC_011748.1\|WP_001164557.1\|3116579_3117857_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NC_011748.1\|WP_001295150.1\|3108644_3109916_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194

Protein	Function_ID	Function_description	E-value
NC_011748.1\|WP_001299097.1\|3110906_3111767_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
NC_011748.1\|WP_000210878.1\|3124565_3126203_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_011748.1\|WP_001071648.1\|3126430_3127222_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NC_011748.1\|WP_000147666.1\|3112520_3113930_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NC_011748.1\|WP_000109532.1\|3109906_3110167_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
NC_011748.1\|WP_000098237.1\|3135357_3136698_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NC_011748.1\|WP_000226815.1\|3127953_3130188_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_011748.1\|WP_001130266.1\|3110183_3110759_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NC_011748.1\|WP_000046785.1\|3130235_3131537_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NC_011748.1\|WP_000039681.1\|3117883_3119362_+\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	5.94468e-108
NC_011748.1\|WP_000254745.1\|3127292_3127628_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NC_011748.1\|WP_000059312.1\|3113951_3115406_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NC_011748.1\|WP_000581937.1\|3127627_3127876_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NC_011748.1\|WP_000036723.1\|3123179_3124478_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_011748.1\|WP_000021321.1\|3115475_3116261_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.84461e-140
NC_011748.1\|WP_001199973.1\|3121283_3121955_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NC_011748.1\|WP_001299652.1\|3111763_3112543_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NC_011748.1\|WP_001164557.1\|3116579_3117857_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	4.01972e-29
NC_011748.1\|WP_001295150.1\|3108644_3109916_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125

>NC_011748.1|WP_000039681.1|3117883_3119362_+|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTLAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWTWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NC_011748.1|WP_001164557.1|3116579_3117857_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQFSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NC_011748.1|WP_000021321.1|3115475_3116261_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NC_011748.1|WP_000059312.1|3113951_3115406_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NC_011748.1|WP_000147666.1|3112520_3113930_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NC_011748.1|WP_001299652.1|3111763_3112543_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NC_011748.1|WP_001299097.1|3110906_3111767_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NC_011748.1|WP_001130266.1|3110183_3110759_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NC_011748.1|WP_000109532.1|3109906_3110167_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NC_011748.1|WP_001295150.1|3108644_3109916_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>NC_011748.1|WP_001199973.1|3121283_3121955_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_011748.1|WP_001288227.1|3122093_3122234_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NC_011748.1|WP_000036723.1|3123179_3124478_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_011748.1|WP_000210878.1|3124565_3126203_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NC_011748.1|WP_001071648.1|3126430_3127222_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NC_011748.1|WP_000254745.1|3127292_3127628_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NC_011748.1|WP_000581937.1|3127627_3127876_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NC_011748.1|WP_000226815.1|3127953_3130188_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NC_011748.1|WP_000046785.1|3130235_3131537_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPKLEALLPKVRACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NC_011748.1|WP_000098237.1|3135357_3136698_-|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_019715	Enterobacterial phage mEp234, complete genome	30416-30458	0	1.0
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_019768	Enterobacteria phage HK106, complete genome	32712-32754	0	1.0
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_016160	Escherichia phage HK75, complete genome	28600-28642	1	0.977
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_019705	Enterobacteria phage mEpX2, complete genome	29054-29096	1	0.977
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	KY979108	Escherichia phage ECP1, complete genome	435-477	1	0.977
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_019719	Enterobacteria phage HK633, complete genome	31748-31790	1	0.977
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	JF974339	Enterobacteria phage IME10, complete genome	9731-9773	1	0.977
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_005344	Enterobacteria phage Sf6, complete genome	28418-28460	1	0.977
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_019711	Enterobacteria phage HK629, complete genome	37177-37219	2	0.953
NC_011748_2	2.1\|2697336\|43\|NC_011748\|CRISPRCasFinder	2697336-2697378	43	NC_019769	Enterobacteria phage HK542, complete genome	29183-29225	2	0.953
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	MN693005	Marine virus AFVG_117M50, complete genome	6262-6293	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP038598	Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence	2052-2083	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP033827	Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence	693-724	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP029125	Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence	518-549	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_AP019693	Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence	2812-2843	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP030192	Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence	1835-1866	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP039274	Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence	118-149	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP016528	Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence	53-84	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP030227	Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence	3124-3155	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NC_013090	Endophytic bacterium LOB-07 plasmid pLK39, complete sequence	53-84	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP030009	Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence	2572-2603	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP011606	Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence	3835-3866	7	0.781
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NZ_CP044113	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence	3639-3670	7	0.781
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP038598	Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence	2051-2083	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP033827	Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence	692-724	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP029125	Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence	518-550	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_AP019693	Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence	2811-2843	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP030192	Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence	1835-1867	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP039274	Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence	118-150	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP016528	Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence	52-84	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP030227	Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence	3123-3155	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NC_013090	Endophytic bacterium LOB-07 plasmid pLK39, complete sequence	52-84	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP030009	Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence	2572-2604	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP011606	Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence	3835-3867	7	0.788
NC_011748_4	4.29\|3120823\|33\|NC_011748\|PILER-CR	3120823-3120855	33	NZ_CP044113	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence	3638-3670	7	0.788
NC_011748_4	4.3\|3120152\|32\|NC_011748\|CRISPRCasFinder,CRT	3120152-3120183	32	MK016501	Mycobacterium phage Nebkiss, complete genome	21454-21485	8	0.75
NC_011748_4	4.3\|3120152\|32\|NC_011748\|CRISPRCasFinder,CRT	3120152-3120183	32	NC_026590	Mycobacterium phage Gaia, complete genome	21453-21484	8	0.75
NC_011748_4	4.5\|3120274\|32\|NC_011748\|CRISPRCasFinder,CRT	3120274-3120305	32	MK016501	Mycobacterium phage Nebkiss, complete genome	21454-21485	8	0.75
NC_011748_4	4.5\|3120274\|32\|NC_011748\|CRISPRCasFinder,CRT	3120274-3120305	32	NC_026590	Mycobacterium phage Gaia, complete genome	21453-21484	8	0.75
NC_011748_4	4.7\|3120396\|32\|NC_011748\|CRISPRCasFinder,CRT	3120396-3120427	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	121002-121033	8	0.75
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	MK295204	Shigella phage vB_SdyM_006, complete genome	16122-16153	8	0.75
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	MG696114	Proteus phage phiP4-3, complete genome	149804-149835	8	0.75
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	NZ_CP017949	Tenericutes bacterium MO-XQ plasmid unnamed, complete sequence	58006-58037	8	0.75
NC_011748_4	4.12\|3120701\|32\|NC_011748\|CRISPRCasFinder,CRT	3120701-3120732	32	AB452989	Serratia phage KSP20 orf7 to orf11 genes for scaffolding protein, major capsid protein, terminase, head completion protein, hypothetical protein, complete and partial cds	1966-1997	8	0.75
NC_011748_4	4.14\|3120823\|32\|NC_011748\|CRISPRCasFinder,CRT	3120823-3120854	32	NC_019341	Pseudomonas syringae plasmid pNCPPB880-40, complete sequence	6612-6643	8	0.75
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	26063-26094	8	0.75
NC_011748_4	4.18\|3120152\|33\|NC_011748\|PILER-CR	3120152-3120184	33	MK016501	Mycobacterium phage Nebkiss, complete genome	21453-21485	8	0.758
NC_011748_4	4.18\|3120152\|33\|NC_011748\|PILER-CR	3120152-3120184	33	NC_026590	Mycobacterium phage Gaia, complete genome	21452-21484	8	0.758
NC_011748_4	4.20\|3120274\|33\|NC_011748\|PILER-CR	3120274-3120306	33	MK016501	Mycobacterium phage Nebkiss, complete genome	21453-21485	8	0.758
NC_011748_4	4.20\|3120274\|33\|NC_011748\|PILER-CR	3120274-3120306	33	NC_026590	Mycobacterium phage Gaia, complete genome	21452-21484	8	0.758
NC_011748_4	4.25\|3120579\|33\|NC_011748\|PILER-CR	3120579-3120611	33	MN693005	Marine virus AFVG_117M50, complete genome	6262-6294	8	0.758
NC_011748_4	4.30\|3120884\|33\|NC_011748\|PILER-CR	3120884-3120916	33	NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	26062-26094	8	0.758
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	AP022649	Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence	5394-5425	9	0.719
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	KC821606	Cellulophaga phage phi12:2, complete genome	1257-1288	9	0.719
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	KT070867	Bacillus phage PBC2, complete genome	154855-154886	9	0.719
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	460266-460297	9	0.719
NC_011748_4	4.25\|3120579\|33\|NC_011748\|PILER-CR	3120579-3120611	33	MK295204	Shigella phage vB_SdyM_006, complete genome	16121-16153	9	0.727
NC_011748_4	4.25\|3120579\|33\|NC_011748\|PILER-CR	3120579-3120611	33	MG696114	Proteus phage phiP4-3, complete genome	149804-149836	9	0.727
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	KC821631	Cellulophaga phage phi48:1, complete genome	1257-1288	10	0.688
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	KC821628	Cellulophaga phage phi18:4, complete genome	1257-1288	10	0.688
NC_011748_4	4.10\|3120579\|32\|NC_011748\|CRISPRCasFinder,CRT	3120579-3120610	32	NC_021805	Cellulophaga phage phi12a:1, complete genome	1257-1288	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1538980-1539011	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1187025-1187056	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1615960-1615991	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1459996-1460027	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1531874-1531905	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1459018-1459049	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1526371-1526402	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1526372-1526403	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1459988-1460019	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1459341-1459372	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1459978-1460009	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1539145-1539176	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1539126-1539157	10	0.688
NC_011748_4	4.15\|3120884\|32\|NC_011748\|CRISPRCasFinder,CRT	3120884-3120915	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1539107-1539138	10	0.688
NC_011748_4	4.25\|3120579\|33\|NC_011748\|PILER-CR	3120579-3120611	33	AP022649	Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence	5394-5426	10	0.697
NC_011748_4	4.6\|3120335\|32\|NC_011748\|CRISPRCasFinder,CRT	3120335-3120366	32	KU160664	Arthrobacter phage Salgado, complete genome	140-171	11	0.656
NC_011748_4	4.6\|3120335\|32\|NC_011748\|CRISPRCasFinder,CRT	3120335-3120366	32	MF140418	Arthrobacter phage LiSara, complete genome	140-171	11	0.656
NC_011748_4	4.6\|3120335\|32\|NC_011748\|CRISPRCasFinder,CRT	3120335-3120366	32	KU160654	Arthrobacter phage Laroye, complete genome	140-171	11	0.656

1. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 0, identity: 1.0

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagatccgcgccattactggtgtttg	Protospacer
*******************************************

2. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 0, identity: 1.0

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagatccgcgccattactggtgtttg	Protospacer
*******************************************

3. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************* *********************

4. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************* *********************

5. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************* *********************

6. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************* *********************

7. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************* *********************

8. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 1, identity: 0.977

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcgccattactggtgtttg	Protospacer
********************* *********************

9. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 2, identity: 0.953

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagacgcgccattactggtgtttg	Protospacer
*********************  ********************

10. spacer 2.1|2697336|43|NC_011748|CRISPRCasFinder matches to NC_019769 (Enterobacteria phage HK542, complete genome) position: , mismatch: 2, identity: 0.953

gttggacaatctccgctgagatccgcgccattactggtgtttg	CRISPR spacer
gttggacaatctccgctgagagccgcaccattactggtgtttg	Protospacer
********************* ****.****************

11. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to MN693005 (Marine virus AFVG_117M50, complete genome) position: , mismatch: 7, identity: 0.781

attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
agttatagattattttgatgagtatgaacaaa	Protospacer
* * * .**************** **** **

12. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP038598 (Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

13. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP033827 (Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

14. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP029125 (Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

15. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_AP019693 (Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

16. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP030192 (Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

17. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP039274 (Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

18. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP016528 (Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

19. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP030227 (Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

20. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NC_013090 (Endophytic bacterium LOB-07 plasmid pLK39, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

21. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP030009 (Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

22. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP011606 (Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

23. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP044113 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

----cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
tctccga----aaagggccgctaatgcggccctttt	Protospacer
    ***    * *******..**************

24. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP038598 (Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.3, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

25. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP033827 (Klebsiella sp. FDAARGOS_511 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

26. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP029125 (Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

27. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_AP019693 (Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 plasmid pSL180013-1, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

28. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP030192 (Salmonella enterica strain SA20104250 plasmid pSA20104250.2, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

29. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP039274 (Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.4, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

30. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP016528 (Salmonella enterica subsp. enterica serovar Heidelberg strain 09-036813-1A plasmid p09-036813-1A_4, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

31. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP030227 (Salmonella enterica strain SA20041605 plasmid pSA20041605.2, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

32. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NC_013090 (Endophytic bacterium LOB-07 plasmid pLK39, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

33. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP030009 (Enterobacter hormaechei subsp. xiangfangensis strain Pb204 plasmid pPb204002, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

34. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP011606 (Citrobacter freundii strain CAV1321 plasmid pCAV1321-4310, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

35. spacer 4.29|3120823|33|NC_011748|PILER-CR matches to NZ_CP044113 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.788

----cgataacacagggccgtcaatgcggcccttttc	CRISPR spacer
tctccga----aaagggccgctaatgcggcccttttc	Protospacer
    ***    * *******..***************

36. spacer 4.3|3120152|32|NC_011748|CRISPRCasFinder,CRT matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

37. spacer 4.3|3120152|32|NC_011748|CRISPRCasFinder,CRT matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

38. spacer 4.5|3120274|32|NC_011748|CRISPRCasFinder,CRT matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

39. spacer 4.5|3120274|32|NC_011748|CRISPRCasFinder,CRT matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.75

atcttcttgttcaggaacgtcagtagaggtgt	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgt	Protospacer
**   . .***********.****.*******

40. spacer 4.7|3120396|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

41. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to MK295204 (Shigella phage vB_SdyM_006, complete genome) position: , mismatch: 8, identity: 0.75

-----attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
tggtcat-----gattattttgatgattatgaaaaac	Protospacer
     **     ************** * *******.

42. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to MG696114 (Proteus phage phiP4-3, complete genome) position: , mismatch: 8, identity: 0.75

-----attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
tggtcat-----gattattttgatgattatgaaaaac	Protospacer
     **     ************** * *******.

43. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP017949 (Tenericutes bacterium MO-XQ plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaggattattttgatgagtctgaaaaat-----	CRISPR spacer
attaaaggattatttagatgggtt-----aatcactg	Protospacer
*************** ****.**.     ***

44. spacer 4.12|3120701|32|NC_011748|CRISPRCasFinder,CRT matches to AB452989 (Serratia phage KSP20 orf7 to orf11 genes for scaffolding protein, major capsid protein, terminase, head completion protein, hypothetical protein, complete and partial cds) position: , mismatch: 8, identity: 0.75

taccggtgtgaattacagcaccaccgccaccc	CRISPR spacer
ggccggtgtgaacaacagcaccaccacgcgcc	Protospacer
 .**********. ***********.*   **

45. spacer 4.14|3120823|32|NC_011748|CRISPRCasFinder,CRT matches to NC_019341 (Pseudomonas syringae plasmid pNCPPB880-40, complete sequence) position: , mismatch: 8, identity: 0.75

cgataacacagggccgtcaatgcggccctttt	CRISPR spacer
caaattaaaagggccgctaatgcggccctttt	Protospacer
*.*    * *******..**************

46. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP012265 (Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence) position: , mismatch: 8, identity: 0.75

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
ctttgcggattttctccagcagcgccagttct	Protospacer
 * .  ** *** ******************.

47. spacer 4.18|3120152|33|NC_011748|PILER-CR matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.758

atcttcttgttcaggaacgtcagtagaggtgtc	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgtc	Protospacer
**   . .***********.****.********

48. spacer 4.18|3120152|33|NC_011748|PILER-CR matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.758

atcttcttgttcaggaacgtcagtagaggtgtc	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgtc	Protospacer
**   . .***********.****.********

49. spacer 4.20|3120274|33|NC_011748|PILER-CR matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 8, identity: 0.758

atcttcttgttcaggaacgtcagtagaggtgtc	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgtc	Protospacer
**   . .***********.****.********

50. spacer 4.20|3120274|33|NC_011748|PILER-CR matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 8, identity: 0.758

atcttcttgttcaggaacgtcagtagaggtgtc	CRISPR spacer
atgaatacgttcaggaacgccagtggaggtgtc	Protospacer
**   . .***********.****.********

51. spacer 4.25|3120579|33|NC_011748|PILER-CR matches to MN693005 (Marine virus AFVG_117M50, complete genome) position: , mismatch: 8, identity: 0.758

attaaaggattattttgatgagtctgaaaaatc	CRISPR spacer
agttatagattattttgatgagtatgaacaaag	Protospacer
* * * .**************** **** **

52. spacer 4.30|3120884|33|NC_011748|PILER-CR matches to NZ_CP012265 (Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence) position: , mismatch: 8, identity: 0.758

ataccgggttttgctccagcagcgccagttcct	CRISPR spacer
ctttgcggattttctccagcagcgccagttctt	Protospacer
 * .  ** *** ******************.*

53. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to AP022649 (Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
cgcaaaggattattttgatgaatatgataggg	Protospacer
  .******************.* *** *..

54. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to KC821606 (Cellulophaga phage phi12:2, complete genome) position: , mismatch: 9, identity: 0.719

attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
ggtaggttattattttgatgagtttaaaaaac	Protospacer
. **..  ***************.*.*****.

55. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 9, identity: 0.719

attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
ttccgactgttcttttgataagtctgaaaaat	Protospacer
 *. .*  .** *******.************

56. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
ggtccgggttctgttccagcagcgccttggcc	Protospacer
.  *******.**.************    **

57. spacer 4.25|3120579|33|NC_011748|PILER-CR matches to MK295204 (Shigella phage vB_SdyM_006, complete genome) position: , mismatch: 9, identity: 0.727

-----attaaaggattattttgatgagtctgaaaaatc	CRISPR spacer
tggtcat-----gattattttgatgattatgaaaaacg	Protospacer
     **     ************** * *******.

58. spacer 4.25|3120579|33|NC_011748|PILER-CR matches to MG696114 (Proteus phage phiP4-3, complete genome) position: , mismatch: 9, identity: 0.727

-----attaaaggattattttgatgagtctgaaaaatc	CRISPR spacer
tggtcat-----gattattttgatgattatgaaaaacg	Protospacer
     **     ************** * *******.

59. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to KC821631 (Cellulophaga phage phi48:1, complete genome) position: , mismatch: 10, identity: 0.688

attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
ggtgggttattattttgatgagtttaaaaaac	Protospacer
. *...  ***************.*.*****.

60. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to KC821628 (Cellulophaga phage phi18:4, complete genome) position: , mismatch: 10, identity: 0.688

attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
ggtgggttattattttgatgagtttaaaaaac	Protospacer
. *...  ***************.*.*****.

61. spacer 4.10|3120579|32|NC_011748|CRISPRCasFinder,CRT matches to NC_021805 (Cellulophaga phage phi12a:1, complete genome) position: , mismatch: 10, identity: 0.688

attaaaggattattttgatgagtctgaaaaat	CRISPR spacer
ggtgggttattattttgatgagtttaaaaaac	Protospacer
. *...  ***************.*.*****.

62. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

63. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
ccgcggggttctgctccagcaccgccagcagg	Protospacer
 ..* *****.********** ******.

64. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

65. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

66. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

67. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

68. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

69. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

70. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

71. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

72. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

73. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

74. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

75. spacer 4.15|3120884|32|NC_011748|CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ataccgggttttgctccagcagcgccagttcc	CRISPR spacer
gccgctcgttgtcctccagcagcgccagttga	Protospacer
..  *  *** * *****************

76. spacer 4.25|3120579|33|NC_011748|PILER-CR matches to AP022649 (Bacillus wiedmannii PL1 plasmid pBwiPL1-6 DNA, complete sequence) position: , mismatch: 10, identity: 0.697

attaaaggattattttgatgagtctgaaaaatc	CRISPR spacer
cgcaaaggattattttgatgaatatgataggga	Protospacer
  .******************.* *** *..

77. spacer 4.6|3120335|32|NC_011748|CRISPRCasFinder,CRT matches to KU160664 (Arthrobacter phage Salgado, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

78. spacer 4.6|3120335|32|NC_011748|CRISPRCasFinder,CRT matches to MF140418 (Arthrobacter phage LiSara, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

79. spacer 4.6|3120335|32|NC_011748|CRISPRCasFinder,CRT matches to KU160654 (Arthrobacter phage Laroye, complete genome) position: , mismatch: 11, identity: 0.656

agcattaacccccaccagctcgacgtgtgtgg	CRISPR spacer
tacattcacccccaccagcccgacgccccgtt	Protospacer
 .**** ************.*****. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

195810 : 259057

Emiliania_huxleyi_virus(11.11%)

transposase,plate,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001346129.1\|195810_197163_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|197192_199625_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|199746_200232_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139279.1\|200235_201261_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|201365_201821_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|201824_202613_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139667.1\|202612_203761_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569430.1\|203757_204354_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_001294757.1\|204390_207873_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055741.1\|207885_208845_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020973.1\|208943_211085_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|211141_211531_+	VOC family protein	NA	NA	NA	NA
WP_000176578.1\|211595_212894_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|212942_213203_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|213189_213390_-	YaeP family protein	NA	NA	NA	NA
WP_001185290.1\|213555_214101_+	YaeQ family protein	NA	NA	NA	NA
WP_000635545.1\|214097_214520_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239154.1\|214533_215244_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_000399656.1\|215493_216474_+\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_001260716.1\|217553_219272_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094011.1\|219383_220091_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|220087_220492_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|220609_221425_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|221464_222118_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|222110_223142_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140174.1\|223329_223902_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997043.1\|229799_230603_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	3.2e-39	36.6
WP_001352368.1\|230713_231922_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_000648601.1\|231937_232852_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|233092_233893_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211710.1\|233970_234741_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|234788_236147_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052751.1\|236218_236974_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001298887.1\|237007_237730_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917888.1\|237726_238194_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001297205.1\|238258_238990_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
WP_001086142.1\|239525_240311_+	aminopeptidase	NA	NA	NA	NA
WP_001236649.1\|240447_240927_-	hypothetical protein	NA	NA	NA	NA
WP_000908057.1\|240936_241851_-	hypothetical protein	NA	NA	NA	NA
WP_001284200.1\|241894_242377_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001087741.1\|242400_243753_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_122987046.1\|243763_247198_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240544.1\|247306_248722_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000088873.1\|248726_249470_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_000614396.1\|249466_252226_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	9.4e-83	30.6
WP_000343303.1\|252234_252996_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246421.1\|253000_254332_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|254334_254859_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113725.1\|254855_256136_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348793.1\|256160_257243_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000393853.1\|257206_259057_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

821225 : 864801

Enterobacteria_phage(57.69%)

head,integrase,capsid,lysis,tail,portal

attL 819503:819518|attR 843796:843811

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
819503:819518	attL	NA	NA	NA	NA
WP_000533642.1\|821225_822296_-\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	5.1e-202	100.0
WP_001303849.1\|822273_822492_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000545745.1\|822531_822699_-	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
WP_000120064.1\|822941_823544_+	hypothetical protein	NA	NA	NA	NA
WP_000763367.1\|823754_823976_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.9e-35	100.0
WP_001386642.1\|824074_824356_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_000548541.1\|824366_824558_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	4.7e-26	98.4
WP_000682318.1\|824530_824713_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	1.3e-28	98.3
WP_000186833.1\|824709_825390_-	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	5.1e-131	98.2
WP_000100847.1\|825386_826172_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995433.1\|826177_826474_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_000233576.1\|826549_826756_-	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000858975.1\|827353_828043_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|828147_828378_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182903.1\|828447_828987_+	hypothetical protein	M9NZI6	Enterobacteria_phage	1.2e-61	66.1
WP_000147903.1\|828983_830003_+	replication protein	A0A0M5M7Y1	Salmonella_phage	9.7e-110	63.4
WP_000788812.1\|829999_830701_+	hypothetical protein	M1FJ72	Enterobacteria_phage	1.4e-128	98.7
WP_000145901.1\|830697_831000_+	protein ren	M1FPD5	Enterobacteria_phage	6.1e-44	97.8
WP_001070442.1\|831067_831400_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_044168796.1\|831448_831559_+	hypothetical protein	NA	NA	NA	NA
WP_000709099.1\|831655_833182_+	recombinase family protein	Q3HQV4	Burkholderia_phage	1.0e-30	27.5
WP_000338663.1\|833293_833533_+	hypothetical protein	NA	NA	NA	NA
WP_001391403.1\|834109_834361_+	hypothetical protein	NA	NA	NA	NA
WP_072147432.1\|834457_834559_+	hypothetical protein	NA	NA	NA	NA
WP_001053034.1\|834555_835011_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	4.9e-61	67.5
WP_000224912.1\|835010_835181_+	hypothetical protein	K7P7K0	Enterobacteria_phage	1.4e-13	69.8
WP_000774504.1\|835173_835464_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
WP_000971074.1\|835818_835959_+	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
WP_001204791.1\|836044_836428_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000737263.1\|836616_837699_-	porin OmpD	Q1MVN1	Enterobacteria_phage	4.4e-161	78.7
WP_000839596.1\|838287_838503_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135297.1\|838502_839000_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	3.2e-90	97.6
WP_000092234.1\|838996_839434_+\|lysis	lysis protein	K7P710	Enterobacteria_phage	3.0e-68	94.5
WP_001028465.1\|839639_840161_+	KilA-N domain-containing protein	K7P7K9	Enterobacteria_phage	1.5e-93	100.0
WP_000079508.1\|840510_840921_-	DUF1398 family protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
WP_000105084.1\|840977_841211_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.3e-21	94.4
WP_000453580.1\|841599_842145_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.8e-95	100.0
WP_000198149.1\|844040_844247_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
843796:843811	attR	NA	NA	NA	NA
WP_012601934.1\|844243_845845_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.0e-310	99.6
WP_000123216.1\|845825_847145_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.4e-230	97.7
WP_001299443.1\|847154_847487_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_000063238.1\|847542_848568_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	4.7e-189	97.9
WP_000158875.1\|848609_849005_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.1e-58	95.5
WP_000785282.1\|849016_849370_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
WP_000975081.1\|849381_849960_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
WP_000683129.1\|849956_850352_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
WP_001390429.1\|850359_851100_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	6.8e-129	97.2
WP_000479200.1\|851115_851538_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.4e-59	85.0
WP_000459457.1\|851519_851954_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840297.1\|851946_854508_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	97.8
WP_000847379.1\|854504_854834_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152576.1\|854833_855532_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.7e-132	98.3
WP_000140717.1\|855537_856281_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.1e-146	96.8
WP_000090917.1\|856217_856850_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.9e-97	100.0
WP_000515639.1\|856910_860408_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	97.6
WP_001233090.1\|860478_861078_+	Ail/Lom family protein	A5LH44	Enterobacteria_phage	8.2e-109	97.5
WP_001387657.1\|861142_864217_+\|tail	prophage tail fiber N-terminal domain-containing protein	U5N099	Enterobacteria_phage	2.5e-68	82.1
WP_000885623.1\|864216_864801_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.2e-105	95.4

DBSCAN-SWA_3

1079406 : 1145024

Escherichia_phage(40.0%)

protease,integrase,holin,terminase,lysis,tail,portal

attL 1094491:1094550|attR 1140290:1140351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000156526.1\|1079406_1081167_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877161.1\|1081352_1081805_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000750416.1\|1081880_1082921_-	porin OmpA	NA	NA	NA	NA
WP_000288710.1\|1083277_1083787_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|1084005_1084635_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875044.1\|1084597_1086760_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261243.1\|1086769_1087216_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420536.1\|1087338_1089393_+	DNA helicase IV	A7KV33	Bacillus_phage	1.0e-20	27.9
WP_001386685.1\|1089424_1089883_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847785.1\|1089978_1090641_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|1090813_1091227_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1091271_1091589_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116288.1\|1091646_1092837_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048243.1\|1092931_1093210_+	acylphosphatase	NA	NA	NA	NA
WP_000904442.1\|1093206_1093536_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375136.1\|1093626_1094286_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
1094491:1094550	attL	NA	NA	NA	NA
WP_001299351.1\|1094693_1095713_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.3e-85	49.7
WP_000273151.1\|1095690_1095933_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000048485.1\|1096000_1098493_-	exonuclease	K7PLW7	Enterobacteria_phage	7.3e-58	59.8
WP_000199480.1\|1098588_1098777_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449172.1\|1098773_1098962_-	cell division inhibitor	NA	NA	NA	NA
WP_001440583.1\|1099361_1099481_+	hypothetical protein	NA	NA	NA	NA
WP_001171958.1\|1099529_1099748_-	hypothetical protein	NA	NA	NA	NA
WP_000379557.1\|1099907_1100063_-	DUF1391 family protein	M4QQ57	Salicola_phage	2.3e-07	53.2
WP_000787428.1\|1100270_1100678_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_000912294.1\|1100754_1100982_+	transcriptional regulator	NA	NA	NA	NA
WP_000705383.1\|1100965_1101517_+	hypothetical protein	NA	NA	NA	NA
WP_000020540.1\|1101488_1102529_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	2.4e-87	84.6
WP_072130322.1\|1102440_1102983_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_000450707.1\|1103016_1103787_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	6.7e-87	68.4
WP_001151117.1\|1103802_1104225_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.3e-64	90.6
WP_001275729.1\|1104221_1104710_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	9.2e-66	76.8
WP_000520323.1\|1104702_1104957_+	hypothetical protein	A0A0U2RK51	Escherichia_phage	1.5e-40	90.5
WP_001002676.1\|1104949_1105261_+	hypothetical protein	A0A0U2QV73	Escherichia_phage	3.4e-58	96.1
WP_001224665.1\|1105389_1105572_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	9.1e-27	98.3
WP_000753058.1\|1105564_1105741_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	4.3e-26	93.1
WP_001290001.1\|1105737_1106253_+	hypothetical protein	A0A076GCN9	Escherichia_phage	1.0e-35	76.5
WP_000813254.1\|1107588_1107744_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000980988.1\|1107960_1108212_+	hypothetical protein	NA	NA	NA	NA
WP_001405664.1\|1108278_1108557_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	5.1e-05	37.1
WP_001265110.1\|1108558_1109614_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.0e-89	48.1
WP_000140010.1\|1109614_1109995_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	64.5
WP_000762888.1\|1109991_1110813_+	antitermination protein	K7P7B9	Enterobacteria_phage	3.2e-79	60.1
WP_000917767.1\|1111039_1111237_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_000935509.1\|1111387_1112437_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	6.8e-199	95.7
WP_000143130.1\|1113225_1115088_+	DUF1737 domain-containing protein	Q08JA2	Stx2-converting_phage	0.0e+00	90.2
WP_000284510.1\|1115237_1115453_+\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000731189.1\|1115457_1116264_+	YdfR family protein	Q08JA0	Stx2-converting_phage	3.2e-148	97.4
WP_000551290.1\|1116273_1116588_-	hypothetical protein	Q08J99	Stx2-converting_phage	4.7e-55	100.0
WP_001092910.1\|1116716_1117250_+	lysozyme	Q08J98	Stx2-converting_phage	1.1e-101	96.6
WP_032140280.1\|1117804_1117891_+	hypothetical protein	NA	NA	NA	NA
WP_001342872.1\|1117892_1118360_+\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	1.0e-69	90.9
WP_000348552.1\|1118812_1119289_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.9e-80	95.6
WP_001077619.1\|1119285_1121409_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	99.7
WP_000102415.1\|1121405_1121618_+	hypothetical protein	S5MBY8	Escherichia_phage	3.0e-29	98.6
WP_000974569.1\|1121617_1123120_+\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	1.6e-289	99.6
WP_148713112.1\|1123109_1125089_+\|protease	ATP-dependent Clp protease proteolytic subunit	Q8VNN5	Enterobacteria_phage	0.0e+00	99.7
WP_001097059.1\|1125176_1125503_+	DUF2190 family protein	S5MQJ5	Escherichia_phage	1.8e-49	99.1
WP_001281345.1\|1125495_1125777_+	DNA breaking-rejoining protein	S5MDP9	Escherichia_phage	2.7e-46	98.9
WP_000974955.1\|1125779_1126403_+\|tail	phage tail protein	Q8VNN3	Enterobacteria_phage	7.5e-105	99.0
WP_000682719.1\|1126415_1126814_+\|tail	tail protein	Q9EYD7	Enterobacteria_phage	2.9e-70	98.5
WP_001007216.1\|1126821_1127568_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.6e-120	91.4
WP_000479075.1\|1127586_1128018_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.2e-42	68.1
WP_000533397.1\|1128044_1128449_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	6.9e-43	78.4
WP_000918285.1\|1128438_1131042_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.0
WP_000847345.1\|1131041_1131371_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_001152484.1\|1131370_1132069_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.1e-131	98.3
WP_000140709.1\|1132073_1132817_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.9e-143	93.5
WP_000090896.1\|1132753_1133386_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.1e-95	98.6
WP_000515510.1\|1133446_1136842_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	88.2
WP_001228258.1\|1136909_1137509_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.7e-101	90.5
WP_000216474.1\|1137660_1139064_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A2D1UII2	Escherichia_phage	8.0e-54	92.2
WP_000227780.1\|1139072_1139681_+	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	2.2e-37	44.7
WP_001058323.1\|1140805_1141924_+	hydrogenase 1 small subunit	NA	NA	NA	NA
1140290:1140351	attR	NA	NA	NA	NA
WP_000107384.1\|1141920_1143714_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186424.1\|1143732_1144440_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003662.1\|1144436_1145024_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_4

1408279 : 1472109

Enterobacteria_phage(32.65%)

protease,head,integrase,capsid,terminase,holin,lysis,tail,portal

attL 1408116:1408143|attR 1458304:1458331

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1408116:1408143	attL	NA	NA	NA	NA
WP_000113667.1\|1408279_1409410_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|1409387_1409636_-	excisionase	NA	NA	NA	NA
WP_000048525.1\|1409700_1412172_-	exonuclease	A0A192Y6E0	Salmonella_phage	2.3e-56	55.5
WP_001090200.1\|1412264_1412456_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|1412452_1412641_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001295058.1\|1413207_1413402_+	hypothetical protein	NA	NA	NA	NA
WP_000394541.1\|1413390_1413729_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-06	51.0
WP_000379548.1\|1413740_1413893_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.0e-08	55.3
WP_001003382.1\|1414085_1414493_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	3.3e-24	46.2
WP_000476993.1\|1414570_1414798_+	transcriptional regulator	NA	NA	NA	NA
WP_000705349.1\|1414781_1415303_+	hypothetical protein	NA	NA	NA	NA
WP_000054487.1\|1415283_1416249_+	hypothetical protein	U5P0A0	Shigella_phage	2.6e-56	60.8
WP_001151218.1\|1416289_1416712_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	91.8
WP_000566846.1\|1416964_1417864_+	SMEK domain-containing protein	NA	NA	NA	NA
WP_001373963.1\|1418178_1418832_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_000892866.1\|1418844_1419540_-	hypothetical protein	NA	NA	NA	NA
WP_000967408.1\|1420225_1420438_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.1e-26	94.3
WP_000980987.1\|1420654_1420906_+	hypothetical protein	NA	NA	NA	NA
WP_001515373.1\|1420972_1421251_+	hypothetical protein	I6PCV7	Cronobacter_phage	9.7e-12	48.4
WP_001265117.1\|1421252_1422302_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-108	54.3
WP_000904125.1\|1422314_1422674_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.6e-35	62.8
WP_001064911.1\|1422670_1423360_+	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	3.1e-51	45.1
WP_001336255.1\|1423431_1424271_+	serine/threonine protein kinase	I6PD73	Cronobacter_phage	1.8e-45	40.2
WP_000615423.1\|1424267_1425011_+	protein phosphatase 2C domain-containing protein	I6PCV8	Cronobacter_phage	1.6e-48	43.1
WP_077466990.1\|1425121_1425448_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.0e-45	96.8
WP_000874529.1\|1426723_1428580_+	DUF1737 domain-containing protein	Q08JA2	Stx2-converting_phage	0.0e+00	88.4
WP_000284510.1\|1428730_1428946_+\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000193273.1\|1428950_1429265_+	YdfR family protein	K7PGU6	Enterobacteria_phage	8.3e-52	99.0
WP_001274715.1\|1429320_1429854_+	lysozyme	K7PLY1	Enterobacteria_phage	2.5e-101	98.9
WP_000091923.1\|1429850_1430309_+\|lysis	lysis protein	K7PJW6	Enterobacteria_phage	3.3e-65	87.5
WP_000654791.1\|1430725_1431346_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	2.3e-53	53.7
WP_000077906.1\|1431287_1432355_-	beta family protein	NA	NA	NA	NA
WP_001102145.1\|1432759_1433308_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	6.1e-58	82.7
WP_024174608.1\|1433279_1435208_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	9.4e-263	67.7
WP_000259002.1\|1435191_1435398_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_005104612.1\|1435394_1436987_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	3.8e-185	61.1
WP_001253900.1\|1436976_1438482_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	8.7e-99	52.6
WP_000256824.1\|1438518_1438866_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.8e-23	58.1
WP_000522589.1\|1438923_1439952_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.3e-113	61.6
WP_000201501.1\|1440003_1440387_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_001204556.1\|1440379_1440733_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.1e-41	70.1
WP_000975016.1\|1440747_1441323_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-47	56.3
WP_000798775.1\|1441319_1441715_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	9.7e-58	81.7
WP_000235111.1\|1441722_1442475_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.7e-133	98.0
WP_000479111.1\|1442488_1442920_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.8e-41	68.1
WP_000533402.1\|1442946_1443360_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000082387.1\|1443340_1445914_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.2
WP_000847298.1\|1445910_1446240_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_012601969.1\|1446239_1446938_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	3.2e-128	96.1
WP_000194724.1\|1446948_1447692_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.1e-147	97.6
WP_072129443.1\|1447637_1448270_+\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	2.1e-102	98.6
WP_000514729.1\|1448612_1452086_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	90.3
WP_001233190.1\|1452153_1452753_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.7e-106	93.5
WP_000216491.1\|1452904_1456075_+\|tail	prophage tail fiber N-terminal domain-containing protein	X2KTY7	Enterobacteria_phage	2.0e-84	59.3
WP_000885567.1\|1456074_1456659_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.1e-101	93.8
WP_000240999.1\|1456713_1457382_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937495.1\|1457438_1457708_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000251936.1\|1457822_1457993_+	hypothetical protein	A0A0U2RK60	Escherichia_phage	9.4e-10	62.5
WP_001079509.1\|1458481_1458988_-	ferritin-like domain-containing protein	NA	NA	NA	NA
1458304:1458331	attR	NA	NA	NA	NA
WP_001056491.1\|1459033_1459534_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1459619_1459799_-	general stress protein	NA	NA	NA	NA
WP_000443069.1\|1460179_1460986_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209520.1\|1460985_1462179_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000983912.1\|1462190_1463552_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	1.1e-36	40.2
WP_000763511.1\|1463552_1465148_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_001194599.1\|1465147_1466710_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001386774.1\|1466801_1466846_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|1466983_1467865_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1467861_1468482_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001291216.1\|1468582_1469455_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278904.1\|1469494_1470085_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559283.1\|1470081_1470840_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	8.8e-07	23.4
WP_000422045.1\|1471059_1472109_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_5

1757735 : 1804588

Enterobacteria_phage(43.18%)

protease,integrase,transposase,terminase,lysis,tail,portal

attL 1770958:1770973|attR 1809501:1809516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012601982.1\|1757735_1758317_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-102	94.8
WP_000279144.1\|1758316_1761280_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.6e-54	92.3
WP_001230274.1\|1761344_1761944_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	7.0e-108	96.5
WP_000515371.1\|1762013_1765427_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.0
WP_012601983.1\|1765487_1766135_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	5.6e-111	96.3
WP_012601984.1\|1766032_1766776_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.7e-151	98.8
WP_001152385.1\|1766781_1767480_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.0e-135	100.0
WP_000447253.1\|1767489_1767819_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_000372012.1\|1767818_1770875_-\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	0.0e+00	97.9
WP_001161009.1\|1770846_1771176_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
1770958:1770973	attL	NA	NA	NA	NA
WP_001420256.1\|1771184_1771571_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	8.0e-65	98.4
WP_000211095.1\|1771631_1772375_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	5.0e-132	99.2
WP_001079416.1\|1772385_1772787_-\|tail	phage tail protein U	A5LH34	Enterobacteria_phage	4.1e-72	98.5
WP_000677112.1\|1772783_1773362_-\|tail	phage tail protein	A0A291AWZ0	Escherichia_phage	9.4e-102	99.5
WP_001283152.1\|1773373_1773649_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	8.6e-45	98.9
WP_001097046.1\|1773641_1773965_-	DUF2190 family protein	A5LH31	Enterobacteria_phage	8.5e-52	100.0
WP_001136591.1\|1774051_1776079_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	0.0e+00	99.8
WP_000985943.1\|1776023_1777532_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	3.5e-289	99.8
WP_001072975.1\|1777531_1777744_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000934127.1\|1777740_1779843_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	97.4
WP_000373425.1\|1779842_1780337_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_000548585.1\|1780889_1781096_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	7.6e-22	77.9
WP_012601992.1\|1781383_1781794_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.6e-55	78.5
WP_001082503.1\|1782113_1782578_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	5.9e-62	84.2
WP_001274706.1\|1782876_1783410_-	lysozyme	Q08J98	Stx2-converting_phage	1.7e-97	95.5
WP_000192454.1\|1783465_1783780_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	9.1e-51	97.1
WP_000839561.1\|1783784_1784000_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	5.9e-33	95.8
WP_001348108.1\|1784251_1784626_-	hypothetical protein	NA	NA	NA	NA
WP_000506936.1\|1784797_1785226_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_029380182.1\|1785592_1785721_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	4.7e-06	96.4
WP_000762863.1\|1786619_1787441_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.2e-78	59.0
WP_000904112.1\|1787437_1787812_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.4e-35	62.7
WP_001265278.1\|1787824_1788874_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	6.5e-109	54.6
WP_032213612.1\|1788875_1789154_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.3e-11	48.4
WP_012601996.1\|1789220_1789472_-	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|1789688_1789844_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_122083109.1\|1789945_1790053_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	3.8e-09	100.0
WP_000379313.1\|1790431_1791457_-	hypothetical protein	NA	NA	NA	NA
WP_001151219.1\|1791684_1792110_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	1.8e-62	91.0
WP_000054487.1\|1792150_1793116_-	hypothetical protein	U5P0A0	Shigella_phage	2.6e-56	60.8
WP_000705359.1\|1793096_1793618_-	hypothetical protein	NA	NA	NA	NA
WP_000921596.1\|1793601_1793829_-	transcriptional regulator	NA	NA	NA	NA
WP_000381212.1\|1793909_1794317_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-32	51.9
WP_000379589.1\|1794485_1794641_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_000344944.1\|1794642_1795218_+	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|1795704_1795893_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083282.1\|1795889_1796081_+	DUF1482 family protein	NA	NA	NA	NA
WP_000048303.1\|1796174_1798646_+	exonuclease	A0A192Y6E0	Salmonella_phage	1.1e-58	56.7
WP_000005552.1\|1798718_1798970_+	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_000876979.1\|1799004_1800285_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	8.6e-156	62.3
WP_001360138.1\|1800304_1800415_-	hypothetical protein	NA	NA	NA	NA
WP_001352368.1\|1801317_1802526_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_001295394.1\|1802841_1804056_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|1804261_1804588_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
1809501:1809516	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2104499 : 2196379

106

Enterobacteria_phage(66.67%)

head,integrase,plate,capsid,transposase,terminase,holin,tail,tRNA,portal

attL 2142027:2142086|attR 2177671:2177794

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000564745.1\|2104499_2105471_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000176815.1\|2105635_2108065_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_001214304.1\|2108089_2109190_-	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_001185740.1\|2109577_2110324_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001326063.1\|2110337_2110904_-	VOC family protein	NA	NA	NA	NA
WP_001025327.1\|2111119_2112853_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	6.8e-87	33.7
WP_001299676.1\|2113029_2113518_+	lysozyme inhibitor LprI family protein	NA	NA	NA	NA
WP_001259583.1\|2113637_2114030_-	flagellar protein FlhE	NA	NA	NA	NA
WP_000066983.1\|2114029_2116108_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001278936.1\|2116100_2117249_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000983609.1\|2117450_2118095_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763867.1\|2118105_2118495_-	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000036379.1\|2118509_2119559_-	protein-glutamate methylesterase/protein glutamine deamidase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000204335.1\|2119561_2120422_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000483221.1\|2120440_2122042_-	methyl-accepting chemotaxis protein IV	A0A2H4J162	uncultured_Caudovirales_phage	8.3e-15	29.7
WP_001370571.1\|2122087_2123749_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	7.6e-11	38.4
WP_000147302.1\|2123893_2124397_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_001300654.1\|2124417_2126382_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_000795630.1\|2126386_2127313_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_000906340.1\|2127309_2128197_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_001291603.1\|2128323_2128902_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_001295647.1\|2128904_2129255_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000122437.1\|2130033_2130462_+	universal stress protein UspC	NA	NA	NA	NA
WP_001295646.1\|2130468_2131893_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_001299673.1\|2131867_2132668_-	trehalose-phosphatase	NA	NA	NA	NA
WP_000100205.1\|2132834_2133821_-	arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001187819.1\|2133835_2135350_-	arabinose ABC transporter ATP binding protein AraG	A0A2H4PQG7	Staphylococcus_phage	4.3e-13	27.1
WP_000548675.1\|2135419_2136409_-	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_000179469.1\|2137205_2137709_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000082127.1\|2137787_2138039_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_010723106.1\|2138153_2138240_-	stress response protein AzuC	NA	NA	NA	NA
WP_001237875.1\|2138502_2138826_+	hypothetical protein	NA	NA	NA	NA
WP_000917208.1\|2138997_2139495_+	non-heme ferritin	NA	NA	NA	NA
WP_000377224.1\|2139532_2139772_-	YecH family protein	NA	NA	NA	NA
WP_000797573.1\|2139961_2141173_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000847876.1\|2141234_2141900_-	UPF0149 family protein YecA	NA	NA	NA	NA
2142027:2142086	attL	NA	NA	NA	NA
WP_000116244.1\|2142256_2143258_-\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	4.2e-105	58.5
WP_000865209.1\|2143263_2143611_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_000290355.1\|2143640_2144291_-	membrane protein	NA	NA	NA	NA
WP_000786769.1\|2144306_2144711_-	transcriptional regulator	Q6QID2	Burkholderia_phage	1.6e-23	53.8
WP_001673482.1\|2144800_2144938_-	hypothetical protein	NA	NA	NA	NA
WP_000014504.1\|2145009_2145213_+	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
WP_000159466.1\|2145596_2145875_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	6.2e-35	81.5
WP_000514281.1\|2145886_2146129_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	4.4e-37	98.8
WP_000021670.1\|2146125_2146239_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	5.8e-08	89.2
WP_000985146.1\|2146325_2146529_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	1.1e-25	85.1
WP_000153684.1\|2146525_2146771_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.4e-37	91.4
WP_000599413.1\|2146912_2147278_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.1e-60	96.7
WP_000123434.1\|2147284_2150107_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.9
WP_000686557.1\|2150183_2151143_+	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	8.4e-180	99.4
WP_000211293.1\|2151147_2151462_+	plasmid partitioning/stability family protein	A0A0A7NPT5	Enterobacteria_phage	3.5e-18	51.9
WP_000201254.1\|2151481_2151913_+	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	4.7e-21	43.3
WP_000224220.1\|2151914_2152178_+	hypothetical protein	A0A2P0P958	Salmonella_phage	6.7e-31	73.6
WP_000087799.1\|2152689_2153736_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.3e-206	99.7
WP_000613804.1\|2153735_2155487_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_001262681.1\|2155641_2156478_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	3.0e-149	99.3
WP_001055095.1\|2156501_2157554_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	2.7e-187	93.4
WP_000632367.1\|2157599_2158400_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	7.9e-123	86.8
WP_000063074.1\|2158503_2158998_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-90	100.0
WP_000864893.1\|2158997_2159198_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	3.0e-31	98.5
WP_000104351.1\|2159200_2159524_+\|holin	phage holin, lambda family	A0A0A7NRY9	Enterobacteria_phage	3.6e-50	98.1
WP_000072319.1\|2159520_2159913_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	3.2e-69	96.9
WP_000780566.1\|2159909_2160317_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	7.2e-64	95.6
WP_000202153.1\|2160455_2162336_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.1e-299	81.0
WP_000921130.1\|2162359_2162827_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.3e-82	95.5
WP_000356335.1\|2162819_2163455_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	9.0e-114	99.1
WP_077626052.1\|2163466_2164033_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.8e-98	96.8
WP_001067548.1\|2164050_2164380_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	2.2e-55	100.0
WP_001111919.1\|2164383_2165280_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	2.3e-155	98.7
WP_000071727.1\|2165272_2165881_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	7.6e-86	74.4
WP_000125666.1\|2165877_2167893_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.9e-93	42.0
WP_000885636.1\|2167892_2168471_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.7e-96	90.1
WP_000954200.1\|2168514_2169087_-	serine acetyltransferase	NA	NA	NA	NA
WP_000979946.1\|2169243_2169732_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	8.8e-85	99.4
WP_001388248.1\|2169744_2172552_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	92.5
WP_000333503.1\|2172538_2172694_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	9.7e-22	96.1
WP_000651572.1\|2172702_2173077_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	9.0e-37	73.2
WP_000290462.1\|2173132_2173645_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
WP_000005382.1\|2173644_2174829_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	2.0e-223	98.5
WP_000132825.1\|2174986_2176096_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	9.0e-194	94.3
WP_000488112.1\|2176138_2176399_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078920.1\|2176590_2176731_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
WP_001303543.1\|2176919_2177201_-	hypothetical protein	NA	NA	NA	NA
WP_001160187.1\|2178193_2178742_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
2177671:2177794	attR	NA	NA	NA	NA
WP_001283421.1\|2178798_2180631_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_000611335.1\|2180627_2181284_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_000590344.1\|2181579_2181756_+	hypothetical protein	NA	NA	NA	NA
WP_000106474.1\|2181742_2181967_+	DUF2594 family protein	NA	NA	NA	NA
WP_001152713.1\|2182034_2182757_-	transcriptional regulator SdiA	NA	NA	NA	NA
WP_001272991.1\|2182986_2183739_-	L-cystine ABC transporter ATP-binding protein YecC	G3M9Y6	Bacillus_virus	3.8e-26	34.9
WP_001158220.1\|2183735_2184404_-	cystine ABC transporter permease	NA	NA	NA	NA
WP_001128215.1\|2184418_2185405_-	D-cysteine desulfhydrase	NA	NA	NA	NA
WP_001317901.1\|2185509_2186310_-	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001386865.1\|2186397_2186949_-	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA
WP_001087467.1\|2186994_2187714_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_000079759.1\|2187877_2188927_-	flagellin FliC	NA	NA	NA	NA
WP_000146830.1\|2189174_2190590_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_000270663.1\|2190605_2191016_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_001057844.1\|2191015_2191381_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_001245699.1\|2191458_2192946_+	alpha-amylase	NA	NA	NA	NA
WP_001295642.1\|2192979_2193393_-	lipoprotein	NA	NA	NA	NA
WP_000118890.1\|2193579_2194785_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_000790504.1\|2194781_2195015_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000334575.1\|2195123_2195621_+	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	3.8e-51	64.5
WP_001336494.1\|2195502_2195832_-	helix-turn-helix domain-containing protein	A0A1B0VCD8	Salmonella_phage	8.1e-42	86.6
WP_048814997.1\|2195854_2196379_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-32	59.2

DBSCAN-SWA_7

2632434 : 2710113

Enterobacteria_phage(43.75%)

head,integrase,transposase,terminase,lysis,tRNA,portal

attL 2662248:2662264|attR 2712566:2712582

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001283590.1\|2632434_2633247_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_001289162.1\|2633246_2634260_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000699126.1\|2634325_2635462_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	2.6e-23	29.1
WP_000615821.1\|2635560_2636556_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_000127781.1\|2636552_2637731_-	MFS transporter	NA	NA	NA	NA
WP_000817178.1\|2638023_2639244_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_000683791.1\|2639402_2641409_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_000559764.1\|2641529_2641808_-	YfcL family protein	NA	NA	NA	NA
WP_001089235.1\|2641841_2642390_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_000447361.1\|2642389_2643199_-	TSUP family transporter	NA	NA	NA	NA
WP_001043820.1\|2643198_2644023_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_000918470.1\|2644026_2645112_-	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-90	48.4
WP_001295704.1\|2645146_2646079_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000730807.1\|2646244_2646796_+	endonuclease SmrB	NA	NA	NA	NA
WP_000399648.1\|2646989_2647970_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_001356216.1\|2648196_2649069_-	DUF2544 domain-containing protein	NA	NA	NA	NA
WP_000730291.1\|2649055_2649580_-	fimbrial protein	NA	NA	NA	NA
WP_000822649.1\|2649576_2650047_-	fimbrial protein	NA	NA	NA	NA
WP_000842082.1\|2650043_2650592_-	fimbrial protein	NA	NA	NA	NA
WP_001281615.1\|2650566_2651319_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_001296855.1\|2651338_2653981_-	fimbrial usher protein YfcU	NA	NA	NA	NA
WP_000033328.1\|2654062_2654626_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_001195819.1\|2655300_2655786_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_000426166.1\|2655988_2658133_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_000531990.1\|2658132_2659443_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_000030901.1\|2659622_2659907_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_001296861.1\|2660278_2661619_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_000937848.1\|2661984_2663043_+	hypothetical protein	NA	NA	NA	NA
2662248:2662264	attL	NA	NA	NA	NA
WP_000776768.1\|2663224_2663980_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_000368131.1\|2664273_2665206_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
WP_000958672.1\|2665517_2666675_+\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	5.3e-221	100.0
WP_000178979.1\|2666895_2668806_+	acyltransferase	C6ZR20	Salmonella_phage	4.7e-57	32.6
WP_000129896.1\|2668876_2670856_-\|head	phage head-binding domain-containing protein	A5VW57	Enterobacteria_phage	2.8e-60	93.5
WP_001407254.1\|2670958_2671246_+	Arc family DNA-binding protein	A0A088CPT2	Enterobacteria_phage	7.9e-25	64.2
WP_001085225.1\|2671260_2671482_-	hypothetical protein	NA	NA	NA	NA
WP_000143223.1\|2671481_2672210_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	4.0e-81	66.8
WP_001525195.1\|2672298_2673009_-	hypothetical protein	H6WRU8	Salmonella_phage	1.1e-86	71.0
WP_000655894.1\|2672998_2673172_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	1.5e-18	89.1
WP_000033146.1\|2673283_2673604_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	8.7e-41	92.9
WP_001085430.1\|2673702_2673882_+	hypothetical protein	B8K1I9	Salmonella_phage	2.1e-28	100.0
WP_000757526.1\|2673895_2674261_-	hypothetical protein	A0A192Y6W5	Salmonella_phage	2.1e-67	100.0
WP_000832790.1\|2674291_2674519_+	hypothetical protein	NA	NA	NA	NA
WP_000179846.1\|2674515_2676639_-	hypothetical protein	A0A0A0P1R1	Enterobacteria_phage	1.6e-50	29.5
WP_000257027.1\|2676623_2677967_-	DNA transfer protein	A0A0M5M1J8	Salmonella_phage	2.2e-218	89.7
WP_000964864.1\|2677977_2678670_-	hypothetical protein	A0A2H4FUQ9	Salmonella_phage	3.0e-118	100.0
WP_000614037.1\|2678672_2679128_-	DUF2824 family protein	A0A088CQ57	Enterobacteria_phage	8.8e-87	99.3
WP_000785535.1\|2679127_2679976_-	Packaged DNA stabilization protein gp26	Q716G6	Shigella_phage	5.8e-100	92.9
WP_001122376.1\|2679975_2681394_-	packaged DNA stabilization protein gp10	Q9AYZ4	Salmonella_phage	1.6e-275	99.2
WP_000246749.1\|2681402_2681885_-	packaged DNA stabilization protein p27	Q716G8	Shigella_phage	8.4e-88	99.4
WP_000375637.1\|2681859_2682045_-	hypothetical protein	Q716G9	Shigella_phage	2.7e-26	100.0
WP_001133485.1\|2682087_2683359_-\|head	head protein	Q9AYZ7	Salmonella_phage	1.2e-239	99.5
WP_000426730.1\|2683370_2684255_-	hypothetical protein	Q716H1	Shigella_phage	2.0e-143	99.0
WP_000852331.1\|2684268_2686395_-\|portal	portal protein	Q9AYZ9	Salmonella_phage	0.0e+00	99.2
WP_000200764.1\|2686397_2687810_-\|terminase	PBSX family phage terminase large subunit	Q716H3	Shigella_phage	1.5e-278	100.0
WP_000179914.1\|2687806_2688232_-	hypothetical protein	Q716H4	Shigella_phage	3.2e-67	90.1
WP_000807788.1\|2688311_2688554_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_000999675.1\|2688657_2689038_-	hypothetical protein	Q716B1	Shigella_phage	3.2e-66	98.4
WP_000191869.1\|2689271_2689751_-	DUF2829 domain-containing protein	A0A1Y0T2L3	Pseudomonas_phage	1.1e-55	60.4
WP_032350523.1\|2689832_2689985_-	hypothetical protein	K7PKL2	Enterobacteria_phage	6.8e-20	96.0
WP_001407257.1\|2689972_2690410_-\|lysis	lysis protein	Q716B4	Shigella_phage	3.8e-71	98.6
WP_001504512.1\|2690406_2690904_-	lysozyme RrrD	I6R0P2	Salmonella_phage	2.9e-91	99.4
WP_000286100.1\|2690881_2691085_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_000027552.1\|2691875_2692364_-	late gene antiterminator protein	M1FPN0	Enterobacteria_phage	1.7e-88	98.8
WP_000994516.1\|2692360_2692549_-	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_001008199.1\|2692545_2692908_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	9.2e-63	100.0
WP_000002235.1\|2692904_2693195_-	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	2.9e-51	97.9
WP_001003987.1\|2693194_2693917_-	phage antirepressor KilAC domain-containing protein	K7P7L0	Enterobacteria_phage	1.6e-130	99.2
WP_000566861.1\|2693909_2694080_-	protein ninF	K7P6X0	Enterobacteria_phage	5.5e-26	100.0
WP_001254251.1\|2694076_2694259_-	NinE family protein	Q716C5	Shigella_phage	1.3e-28	100.0
WP_000814617.1\|2694255_2694666_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	1.1e-69	97.8
WP_000344570.1\|2694865_2695180_-	hypothetical protein	K7PKU8	Enterobacteria_phage	1.4e-51	95.2
WP_000807325.1\|2695197_2695404_-	hypothetical protein	K7P7Y0	Enterobacteria_phage	6.9e-31	97.1
WP_000131505.1\|2695479_2696916_-	AAA family ATPase	G5DA90	Enterobacteria_phage	5.1e-274	99.4
WP_000539338.1\|2696905_2697796_-	hypothetical protein	K7PH45	Enterobacterial_phage	1.4e-160	100.0
WP_000166961.1\|2697782_2697944_-	hypothetical protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
WP_000424164.1\|2697978_2698257_-	transcriptional regulator	A0A220NRS4	Escherichia_phage	3.6e-43	100.0
WP_000276886.1\|2698365_2698551_-	Cro/Cl family transcriptional regulator	A5VW97	Enterobacteria_phage	1.6e-26	100.0
WP_000856967.1\|2698631_2699282_+	LexA family transcriptional regulator	A5VW98	Enterobacteria_phage	1.1e-122	100.0
WP_000219331.1\|2700053_2700353_+	hypothetical protein	A5VW99	Enterobacteria_phage	3.4e-31	87.9
WP_000167595.1\|2700361_2700832_+	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_001183771.1\|2701026_2701197_+	hypothetical protein	A0A192Y6R1	Salmonella_phage	1.3e-24	100.0
WP_000050554.1\|2701272_2701443_+	hypothetical protein	K7PJW0	Enterobacteria_phage	3.0e-24	100.0
WP_000031367.1\|2701453_2702059_+	ERF family protein	K7P6W7	Enterobacteria_phage	4.1e-108	100.0
WP_000951329.1\|2702058_2702442_+	hypothetical protein	K7P7R8	Enterobacteria_phage	1.2e-65	97.6
WP_001111299.1\|2702465_2702762_+	DUF2856 family protein	A5VWB0	Enterobacteria_phage	3.9e-51	99.0
WP_032159494.1\|2702781_2703063_+	hypothetical protein	K7P7M4	Enterobacteria_phage	9.7e-44	98.9
WP_001214454.1\|2703059_2703227_+	DUF2737 family protein	Q716F2	Shigella_phage	8.6e-24	98.2
WP_000034245.1\|2703223_2703895_+	ead/Ea22-like family protein	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	3.0e-83	73.2
WP_000951713.1\|2704257_2704467_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	1.3e-32	91.2
WP_000208008.1\|2704463_2705093_+	DUF550 domain-containing protein	K7P7E3	Enterobacteria_phage	1.1e-55	58.6
WP_001277767.1\|2705189_2705369_+	Eag protein	K7PL40	Enterobacteria_phage	2.5e-29	100.0
WP_001163428.1\|2705500_2705701_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_001197025.1\|2706230_2707478_-	oligosaccharide MFS transporter	NA	NA	NA	NA
WP_001274887.1\|2707549_2708464_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000194515.1\|2708679_2710113_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	7.0e-29	25.4
2712566:2712582	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3070715 : 3077855

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3070715_3073277_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141316.1\|3073382_3074039_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	1.5e-50	46.8
WP_001297141.1\|3074089_3074857_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847985.1\|3075052_3075961_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590392.1\|3075957_3077220_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|3077216_3077855_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_9

3310508 : 3365085

Staphylococcus_phage(20.0%)

transposase,tRNA,protease,integrase

attL 3311493:3311510|attR 3355658:3355675

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000701841.1\|3310508_3311267_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105559.1\|3311472_3312393_-	agmatinase	NA	NA	NA	NA
3311493:3311510	attL	NA	NA	NA	NA
WP_000758915.1\|3312528_3313260_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3313405_3315382_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3315390_3315522_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001303650.1\|3315657_3315873_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3316176_3317331_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001112301.1\|3317766_3319161_+	galactose/proton symporter	NA	NA	NA	NA
WP_000858396.1\|3319237_3319735_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286500.1\|3319829_3320537_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001222508.1\|3320616_3321348_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593273.1\|3321360_3322311_+	glutathione synthase	NA	NA	NA	NA
WP_001053178.1\|3322419_3322983_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017106.1\|3322982_3323399_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001349546.1\|3323574_3324555_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3324572_3325277_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3325294_3325861_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|3325857_3326148_+	YggU family protein	NA	NA	NA	NA
WP_001174743.1\|3326155_3326749_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239939.1\|3326741_3327878_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000745217.1\|3328032_3329040_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394125.1\|3329156_3330203_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|3330378_3331098_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107564.1\|3331281_3331608_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|3331607_3332327_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001297399.1\|3332487_3333540_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|3333567_3333843_+	oxidative damage protection protein	NA	NA	NA	NA
WP_001298916.1\|3333907_3334987_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001049791.1\|3335188_3336445_+	nucleoside permease NupG	NA	NA	NA	NA
WP_000839766.1\|3336494_3338630_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234526.1\|3339027_3339735_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218809.1\|3340113_3341376_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	6.9e-81	43.1
WP_000286652.1\|3343586_3346436_+	DEAD/DEAH box helicase	A0A2H4J643	uncultured_Caudovirales_phage	2.2e-183	39.6
WP_001273465.1\|3346461_3347442_+	ATP-binding protein	A0A1B2RW50	Lymphocystis_disease_virus	4.2e-17	30.2
WP_000126412.1\|3347451_3349839_+	S8 family peptidase	NA	NA	NA	NA
WP_000105162.1\|3349848_3351477_+	site-specific DNA-methyltransferase	A0A0K1LNZ9	Escherichia_phage	4.6e-85	42.6
WP_000081335.1\|3351479_3354350_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_001091149.1\|3354438_3354732_+	hypothetical protein	NA	NA	NA	NA
WP_000747051.1\|3354801_3355152_+\|transposase	transposase	Q716C1	Shigella_phage	1.8e-39	98.9
WP_001254932.1\|3355071_3356223_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
3355658:3355675	attR	NA	NA	NA	NA
WP_000624688.1\|3359213_3359564_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.2e-40	63.8
WP_001309734.1\|3359560_3359995_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-19	60.3
WP_001045649.1\|3360966_3365085_-\|protease	serine protease autotransporter toxin Pic	Q9LA54	Enterobacteria_phage	0.0e+00	45.8

DBSCAN-SWA_10

3376122 : 3427057

uncultured_marine_virus(25.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154665.1\|3376122_3377535_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_000152747.1\|3377553_3378105_-	type VI secretion lipoprotein TssJ	NA	NA	NA	NA
WP_001033155.1\|3378112_3379189_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_001390299.1\|3379192_3379492_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_000005080.1\|3379501_3379969_-	hypothetical protein	NA	NA	NA	NA
WP_000198270.1\|3379979_3381962_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.2e-12	35.6
WP_001173973.1\|3381974_3382907_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001390300.1\|3382897_3384700_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000555549.1\|3384692_3385115_-	hypothetical protein	NA	NA	NA	NA
WP_000233190.1\|3385124_3385631_-	type VI secretion system protein AaiC/Hcp2	NA	NA	NA	NA
WP_000215053.1\|3385640_3387119_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000072549.1\|3387121_3387598_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001352368.1\|3388043_3389252_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_001420591.1\|3390353_3390479_-	hypothetical protein	NA	NA	NA	NA
WP_014966195.1\|3390456_3390843_-	hypothetical protein	NA	NA	NA	NA
WP_001387054.1\|3391662_3391986_-	hypothetical protein	NA	NA	NA	NA
WP_001387055.1\|3392051_3392696_-	hypothetical protein	NA	NA	NA	NA
WP_000226517.1\|3392716_3392986_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_000502863.1\|3393064_3393709_-	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	3.0e-56	53.0
WP_001204642.1\|3393693_3394926_-	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	2.3e-60	32.3
WP_000370895.1\|3394966_3395797_-	hypothetical protein	NA	NA	NA	NA
WP_000586175.1\|3395799_3396360_-	hypothetical protein	NA	NA	NA	NA
WP_000200211.1\|3396574_3397942_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_001390303.1\|3398366_3400112_-	AAA family ATPase	NA	NA	NA	NA
WP_044168561.1\|3400347_3401550_-	GIY-YIG nuclease family protein	Q9MC01	Enterobacteria_phage	7.8e-66	60.6
WP_001403987.1\|3401746_3402148_-	hypothetical protein	A0A0R6PKW9	Moraxella_phage	1.5e-05	71.9
WP_001137932.1\|3402304_3402736_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000974469.1\|3402738_3403275_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000553781.1\|3403255_3404356_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000342463.1\|3404310_3406074_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000115357.1\|3406081_3406774_-	hypothetical protein	NA	NA	NA	NA
WP_000146515.1\|3406775_3408374_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_001037088.1\|3408373_3411763_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_001403985.1\|3411755_3412904_-	hypothetical protein	NA	NA	NA	NA
WP_000033410.1\|3412907_3413174_-	PAAR domain-containing protein	E5E3Y0	Burkholderia_phage	6.9e-07	39.0
WP_000196357.1\|3413205_3413883_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-EAEC	NA	NA	NA	NA
WP_000196359.1\|3414026_3414704_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-EAEC	NA	NA	NA	NA
WP_000170556.1\|3414723_3416406_-	T6SS effector phospholipase Tle1-EAEC	NA	NA	NA	NA
WP_001054503.1\|3416402_3418928_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_000148361.1\|3419450_3420017_-	hypothetical protein	NA	NA	NA	NA
WP_000431645.1\|3420013_3422671_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.7e-93	32.5
WP_001007313.1\|3422839_3423331_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000558483.1\|3423336_3425067_-	OmpA family protein	NA	NA	NA	NA
WP_001040045.1\|3425069_3425723_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000708637.1\|3425719_3427057_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_11

4737449 : 4807925

Pseudomonas_phage(33.33%)

transposase,tRNA,protease,integrase

attL 4739616:4739630|attR 4809207:4809221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295074.1\|4737449_4738967_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.7e-87	38.0
WP_000856837.1\|4739203_4740661_-	dipeptide/tripeptide permease DtpC	A0A0P0IY73	Acinetobacter_phage	5.2e-48	29.4
4739616:4739630	attL	NA	NA	NA	NA
WP_001295383.1\|4740719_4742867_-	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000092909.1\|4742946_4744281_-	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001187182.1\|4744646_4746185_-	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA
WP_001290187.1\|4746933_4747776_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000772029.1\|4747860_4748058_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000761715.1\|4748077_4748566_-	hypothetical protein	NA	NA	NA	NA
WP_001094430.1\|4748562_4748940_-	toxin	NA	NA	NA	NA
WP_001285620.1\|4748986_4749364_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000692350.1\|4749443_4749665_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001387238.1\|4749751_4750228_-	RadC family protein	NA	NA	NA	NA
WP_000855057.1\|4750243_4750717_-	antirestriction protein	A9J566	Pseudomonas_phage	1.1e-12	30.3
WP_001189118.1\|4752652_4754161_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.2e-44	31.8
WP_001387241.1\|4755125_4757321_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_000750143.1\|4757326_4758664_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_001015711.1\|4758660_4760403_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_001287497.1\|4760402_4761350_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001387605.1\|4761350_4763075_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000074478.1\|4763210_4764404_+	MFS transporter	NA	NA	NA	NA
WP_001387604.1\|4764353_4765280_-	hypothetical protein	NA	NA	NA	NA
WP_000555384.1\|4766019_4767153_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001189118.1\|4767764_4769273_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.2e-44	31.8
WP_001390760.1\|4771262_4772387_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	3.3e-199	99.7
WP_001045649.1\|4773548_4777667_-\|protease	serine protease autotransporter toxin Pic	Q9LA54	Enterobacteria_phage	0.0e+00	45.8
WP_001189118.1\|4778394_4779903_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.2e-44	31.8
WP_000477619.1\|4782656_4782983_-	hypothetical protein	NA	NA	NA	NA
WP_001223350.1\|4784433_4786524_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_000080206.1\|4787128_4788742_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.6e-170	61.0
WP_001189111.1\|4790359_4791868_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
WP_000422750.1\|4792702_4793128_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-48	97.9
WP_000291751.1\|4795738_4796320_-	hypothetical protein	NA	NA	NA	NA
WP_001034110.1\|4796366_4800224_-\|protease	serine protease autotransporter toxin SigA	Q9LA58	Enterobacterial_phage	2.4e-225	38.3
WP_000344103.1\|4802694_4806210_-	ATP-binding protein	NA	NA	NA	NA
WP_001218804.1\|4806662_4807925_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	9.3e-78	38.3
4809207:4809221	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4917419 : 4981813

uncultured_marine_virus(23.08%)

transposase,tRNA,integrase

attL 4920465:4920479|attR 4965646:4965660

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000399648.1\|4917419_4918400_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000047539.1\|4918676_4919063_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000148581.1\|4919135_4919597_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000013042.1\|4919609_4920545_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	3.8e-52	40.2
4920465:4920479	attL	NA	NA	NA	NA
WP_001296693.1\|4920548_4920683_-	pyr operon leader peptide	NA	NA	NA	NA
WP_000230281.1\|4920963_4921359_-	RidA family protein	NA	NA	NA	NA
WP_000500725.1\|4921489_4922203_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000256656.1\|4922273_4922867_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000583470.1\|4923011_4923464_+	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA
WP_001387612.1\|4923586_4924906_+	DNA-binding protein	NA	NA	NA	NA
WP_001387613.1\|4924917_4925148_+	hypothetical protein	NA	NA	NA	NA
WP_000012907.1\|4925248_4926253_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000002953.1\|4926414_4926831_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_001059422.1\|4926876_4927380_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000079641.1\|4927572_4928769_+	DUF898 domain-containing protein	NA	NA	NA	NA
WP_000416376.1\|4928824_4931680_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.0e-140	36.7
WP_000786399.1\|4931679_4932123_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397144.1\|4932256_4933768_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000584114.1\|4934034_4935135_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001295681.1\|4935134_4936217_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_001294558.1\|4936335_4937838_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	3.0e-83	44.6
WP_001349989.1\|4937915_4938914_-	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA
WP_001128335.1\|4938980_4940300_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
WP_000998695.1\|4940364_4941129_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_001197416.1\|4941152_4942184_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
WP_000896735.1\|4942400_4942964_+	gluconokinase	NA	NA	NA	NA
WP_000061766.1\|4942967_4943987_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.4
WP_001218930.1\|4944453_4945719_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.2e-79	38.0
WP_012602112.1\|4946042_4947542_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_001477155.1\|4947715_4948456_-	porin family protein	NA	NA	NA	NA
WP_001274542.1\|4949068_4950718_+	DNA phosphorothioation-dependent restriction protein DptF	NA	NA	NA	NA
WP_000283233.1\|4950722_4952048_+	DNA phosphorothioation-dependent restriction protein DptG	NA	NA	NA	NA
WP_000114120.1\|4952028_4957083_+	DNA phosphorothioation-dependent restriction protein DptH	NA	NA	NA	NA
WP_001327223.1\|4957120_4957639_+	accessory gene regulator B family protein	NA	NA	NA	NA
WP_000071509.1\|4957639_4957945_+	hypothetical protein	NA	NA	NA	NA
WP_071533805.1\|4957993_4958800_+	DGQHR domain-containing protein	NA	NA	NA	NA
WP_000937304.1\|4958858_4959215_-	DNA sulfur modification protein DndE	NA	NA	NA	NA
WP_000905895.1\|4959214_4961215_-	DNA sulfur modification protein DndD	NA	NA	NA	NA
WP_000041168.1\|4961204_4962839_-	DNA phosphorothioation system sulfurtransferase DndC	R9TRT5	Rhizobium_phage	6.1e-21	27.9
WP_000179014.1\|4962835_4963921_-	DNA sulfur modification protein DndB	NA	NA	NA	NA
WP_000258195.1\|4964383_4964557_+	hypothetical protein	NA	NA	NA	NA
WP_000166952.1\|4964553_4964898_+	ProQ/FinO family protein	Q2A0A1	Sodalis_phage	3.1e-07	38.4
WP_001167422.1\|4964916_4965465_-	hypothetical protein	NA	NA	NA	NA
WP_000831911.1\|4965552_4965711_-	hypothetical protein	NA	NA	NA	NA
4965646:4965660	attR	NA	NA	NA	NA
WP_000958149.1\|4965707_4965944_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000991584.1\|4966012_4966588_-	hypothetical protein	NA	NA	NA	NA
WP_001352368.1\|4967417_4968626_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_001352368.1\|4969247_4970456_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_000562370.1\|4971978_4972299_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000460651.1\|4972291_4972678_+	hypothetical protein	NA	NA	NA	NA
WP_001284954.1\|4972685_4973372_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088605.1\|4973349_4973973_-	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001089068.1\|4974054_4975260_+	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
WP_000428546.1\|4975372_4975966_-	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001352368.1\|4976479_4977688_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_001611300.1\|4977757_4977895_-	hypothetical protein	NA	NA	NA	NA
WP_085947771.1\|4980651_4981813_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6

DBSCAN-SWA_13

4989099 : 5039275

Enterobacteria_phage(25.0%)

transposase,holin,terminase,integrase

attL 4998356:4998370|attR 5026530:5026544

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123906543.1\|4989099_4989594_+\|terminase	phage terminase large subunit family protein	NA	NA	NA	NA
WP_001295213.1\|4989607_4990630_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.5e-198	98.8
WP_024174622.1\|4990629_4991409_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.9e-138	98.8
WP_001075491.1\|4991624_4992356_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000778605.1\|4993025_4993556_+	hypothetical protein	NA	NA	NA	NA
WP_000110727.1\|4995175_4996030_+	hypothetical protein	NA	NA	NA	NA
WP_000126799.1\|4996026_4996989_-	hypothetical protein	NA	NA	NA	NA
WP_000010383.1\|4997094_4997979_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_001282919.1\|4998181_4998862_+	WYL domain-containing protein	NA	NA	NA	NA
4998356:4998370	attL	NA	NA	NA	NA
WP_001097301.1\|4999009_4999687_+	hypothetical protein	NA	NA	NA	NA
WP_001278287.1\|4999692_4999926_+	DUF905 family protein	NA	NA	NA	NA
WP_001175163.1\|5000015_5000834_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.9e-47	39.1
WP_000206664.1\|5000925_5001411_+	antirestriction protein	A9J566	Pseudomonas_phage	1.2e-12	31.7
WP_001186165.1\|5001425_5001902_+	RadC family protein	NA	NA	NA	NA
WP_000692350.1\|5001988_5002210_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001285607.1\|5002289_5002658_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_001094443.1\|5002747_5003125_+	toxin	NA	NA	NA	NA
WP_000761685.1\|5003121_5003610_+	hypothetical protein	NA	NA	NA	NA
WP_001327226.1\|5003629_5003827_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001290178.1\|5003911_5004058_+	hypothetical protein	NA	NA	NA	NA
WP_000142493.1\|5004470_5005397_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_001223819.1\|5005386_5007006_-	TraI domain-containing protein	NA	NA	NA	NA
WP_001143292.1\|5008306_5008600_-	hypothetical protein	NA	NA	NA	NA
WP_000202281.1\|5008967_5009840_-	HNH endonuclease	NA	NA	NA	NA
WP_001178761.1\|5010084_5010465_-	hypothetical protein	NA	NA	NA	NA
WP_001099275.1\|5012003_5012300_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001104341.1\|5012929_5014006_+	Fic family protein	NA	NA	NA	NA
WP_000729465.1\|5014056_5014686_-	hypothetical protein	NA	NA	NA	NA
WP_001114712.1\|5015596_5016421_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001351184.1\|5016586_5018143_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000859648.1\|5018142_5018832_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_001215044.1\|5018943_5019108_+	hypothetical protein	NA	NA	NA	NA
WP_000416151.1\|5021077_5022109_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.4e-18	27.0
WP_000916805.1\|5022379_5022823_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000705930.1\|5022838_5023126_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000345347.1\|5023138_5024395_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_001327567.1\|5024641_5024896_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	8.0e-21	62.2
WP_000107474.1\|5025317_5026331_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_000998350.1\|5026342_5027659_-	L-fucose:H+ symporter permease	NA	NA	NA	NA
5026530:5026544	attR	NA	NA	NA	NA
WP_000350265.1\|5027686_5028607_-	ribokinase	NA	NA	NA	NA
WP_001295538.1\|5028912_5029695_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_000080200.1\|5030878_5032492_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.8e-182	63.6
WP_000624722.1\|5032522_5032873_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422739.1\|5032869_5033295_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_001422798.1\|5033433_5033562_+	alcohol dehydrogenase	NA	NA	NA	NA
WP_000145474.1\|5033742_5034399_-	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_000625669.1\|5034644_5035922_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001293435.1\|5035984_5037982_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_000088357.1\|5038135_5039275_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.5e-68	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011748

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection