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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011750 Escherichia coli IAI39, complete genome 5 crisprs DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,PD-DExK,WYL 0 4 12 0

Results visualization

1. NC_011750
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011750_1 1460683-1460806 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011750_2 1937600-1937802 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011750_3 2195333-2195424 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011750_4 2331517-2331664 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011750_5 4938440-4938586 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011750_3 3.1|2195359|40|NC_011750|CRISPRCasFinder 2195359-2195398 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NC_011750_1 1.1|1460726|38|NC_011750|CRISPRCasFinder 1460726-1460763 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NC_011750_4 4.1|2331545|32|NC_011750|CRISPRCasFinder 2331545-2331576 32 NZ_CP045060 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence 9736-9767 9 0.719
NC_011750_4 4.1|2331545|32|NC_011750|CRISPRCasFinder 2331545-2331576 32 NZ_CP045053 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence 9737-9768 9 0.719
NC_011750_4 4.1|2331545|32|NC_011750|CRISPRCasFinder 2331545-2331576 32 NZ_CP045057 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence 9736-9767 9 0.719
NC_011750_4 4.3|2331553|32|NC_011750|PILER-CR 2331553-2331584 32 NZ_CP045060 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence 9736-9767 9 0.719
NC_011750_4 4.3|2331553|32|NC_011750|PILER-CR 2331553-2331584 32 NZ_CP045053 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence 9737-9768 9 0.719
NC_011750_4 4.3|2331553|32|NC_011750|PILER-CR 2331553-2331584 32 NZ_CP045057 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence 9736-9767 9 0.719

1. spacer 3.1|2195359|40|NC_011750|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 1.1|1460726|38|NC_011750|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 4.1|2331545|32|NC_011750|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

4. spacer 4.1|2331545|32|NC_011750|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

5. spacer 4.1|2331545|32|NC_011750|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

6. spacer 4.3|2331553|32|NC_011750|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

7. spacer 4.3|2331553|32|NC_011750|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

8. spacer 4.3|2331553|32|NC_011750|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 487489 : 589935 97 Escherichia_phage(35.48%) tail,transposase,head,protease,tRNA NA
DBSCAN-SWA_2 903232 : 943349 31 Enterobacteria_phage(52.94%) transposase,tail NA
DBSCAN-SWA_3 1038977 : 1047833 8 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_4 1509235 : 1616525 105 Escherichia_phage(31.58%) portal,terminase,tail,integrase,transposase,lysis,head,protease,capsid,tRNA attL 1501712:1501729|attR 1587736:1587753
DBSCAN-SWA_5 1865215 : 2074507 238 Enterobacteria_phage(22.63%) portal,tail,terminase,integrase,transposase,lysis,head,protease,plate,capsid,tRNA attL 1931857:1931916|attR 2077843:2078638
DBSCAN-SWA_6 2279862 : 2346114 52 Bacillus_phage(27.78%) transposase,lysis,protease,tRNA NA
DBSCAN-SWA_7 2588733 : 2641825 42 Escherichia_phage(33.33%) transposase,integrase attL 2574643:2574660|attR 2622973:2622990
DBSCAN-SWA_8 2732864 : 2796274 65 Escherichia_phage(58.18%) tail,terminase,integrase,transposase,holin,protease attL 2751281:2751297|attR 2793160:2793176
DBSCAN-SWA_9 2886547 : 2947195 55 Shigella_phage(34.78%) tail,transposase,plate,tRNA NA
DBSCAN-SWA_10 4603260 : 4671680 68 Burkholderia_phage(27.27%) plate,transposase,tRNA,tail NA
DBSCAN-SWA_11 4902927 : 4962752 48 Klosneuvirus(13.33%) transposase,protease,tRNA,integrase attL 4948689:4948703|attR 4955665:4955679
DBSCAN-SWA_12 5014889 : 5096735 79 Enterobacteria_phage(40.38%) portal,terminase,tail,integrase,transposase,lysis,protease attL 5015918:5015935|attR 5106166:5106183
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage