CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013200	Lactobacillus rhamnosus Lc 705 plasmid pLC1, complete sequence	0 crisprs	NA	0	0	0	0
NC_013199	Lactobacillus rhamnosus Lc 705, complete genome	1 crisprs	DinG,WYL,DEDDh,csa3,c2c9_V-U4,cas3,cas14j	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013199_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013199_1

973331-973476

Orphan

Consensus_repeat	Method
GCGTGATGGCCGGTCTTTGGCCATTGCGCCCAAGGTCCTTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013199_1

>merge|NC_013199|1|973331-973476|CRISPRCasFinder
GCGTGATGGCCGGTCTTTGGCCATTGCGCCCAAGGTCCTTACACGCAGACTTCTGCGCTGGGGAGCGCGTTATGGGCGTAAACCAGAATATAAGCGGCCTTAAGCGTGATGACCGGTCTTTGGCCATTGCGCCCAAGGTCCTTACA

>NC_013199|1|1|973331-973476|CRISPRCasFinder
GCGTGATGGCCGGTCTTTGGCCATTGCGCCCAAGGTCCTTACA	CGCAGACTTCTGCGCTGGGGAGCGCGTTATGGGCGTAAACCAGAATATAAGCGGCCTTAA
GCGTGATGACCGGTCTTTGGCCATTGCGCCCAAGGTCCTTACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013199.1\|WP_005688705.1\|960983_961631_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_013199.1\|WP_005684526.1\|977353_977944_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NC_013199.1\|WP_005688708.1\|962733_963399_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_013199.1\|WP_005688706.1\|961623_962634_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_013199.1\|WP_005688715.1\|967396_969412_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_013199.1\|WP_014571226.1\|969592_972487_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_013199.1\|WP_015764377.1\|956673_957729_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NC_013199.1\|WP_005684522.1\|973624_974512_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_013199.1\|WP_005688704.1\|958993_960721_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NC_013199.1\|WP_005684511.1\|957794_958742_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_013199.1\|WP_005684524.1\|975541_976489_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NC_013199.1\|WP_005688713.1\|966356_967004_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NC_013199.1\|WP_005684527.1\|979139_980177_+\|SorC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367868
NC_013199.1\|WP_005684529.1\|981418_982609_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_013199.1\|WP_005684528.1\|980213_981236_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NC_013199.1\|WP_005688720.1\|974508_975537_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NC_013199.1\|WP_005684531.1\|983489_984794_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_013199.1\|WP_005688718.1\|972688_973228_+\|DUF308-domain-containing-protein	unknown	unknown	gnl\|CDD\|225786
NC_013199.1\|WP_005684525.1\|976779_977235_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_013199.1\|WP_005684530.1\|982686_983442_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589

Protein	Function_ID	Function_description	E-value
NC_013199.1\|WP_005688705.1\|960983_961631_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.56755e-62
NC_013199.1\|WP_005684526.1\|977353_977944_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	3.54865e-141
NC_013199.1\|WP_005688708.1\|962733_963399_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	5.01575e-105
NC_013199.1\|WP_005688706.1\|961623_962634_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.23602e-29
NC_013199.1\|WP_005688715.1\|967396_969412_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_013199.1\|WP_014571226.1\|969592_972487_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_013199.1\|WP_015764377.1\|956673_957729_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NC_013199.1\|WP_005684522.1\|973624_974512_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	4.56818e-172
NC_013199.1\|WP_005688704.1\|958993_960721_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_013199.1\|WP_005684511.1\|957794_958742_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	2.12801e-140
NC_013199.1\|WP_005684524.1\|975541_976489_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	1.94985e-132
NC_013199.1\|WP_005688713.1\|966356_967004_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	4.05357e-64
NC_013199.1\|WP_005684527.1\|979139_980177_+\|SorC-family-transcriptional-regulator	gnl\|CDD\|367868	pfam04198, Sugar-bind, Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.	1.04396e-57
NC_013199.1\|WP_005684529.1\|981418_982609_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_013199.1\|WP_005684528.1\|980213_981236_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	6.21306e-173
NC_013199.1\|WP_005688720.1\|974508_975537_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	3.41615e-124
NC_013199.1\|WP_005684531.1\|983489_984794_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_013199.1\|WP_005688718.1\|972688_973228_+\|DUF308-domain-containing-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	9.51883e-09
NC_013199.1\|WP_005684525.1\|976779_977235_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.0887e-22
NC_013199.1\|WP_005684530.1\|982686_983442_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.71241e-147

>NC_013199.1|WP_005688718.1|972688_973228_+|DUF308-domain-containing-protein
MLNRKSFGFDWGQFITGILFLIAAFVVLRYPLATLKTVTFIFAVVAIIRGIAILAGYSTLRQFTGKLAWISLLMGIFDLVIGLVFLLNAGFGMATITMMFAIWFLVDSVGSLFNVGHLRIAGTGWFILYLILDILAVIVSLMLFMQPVVAAVTLVTLLAMFFVLFGIECIVIAFARRNI
>NC_013199.1|WP_014571226.1|969592_972487_+|excinuclease-ABC-subunit-UvrA
MANDKIVIHGARAHNLKNIDVTIPRNKLVVMTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGHPICPNDGTPITSQSVEQMVDRVLALPEKSRIQILSPIVRRKKGSHKKVFAKIMREGYVRMRVDGEVMDATADYELDKNKAHDIDIVIDRIVVKPEARSRLFDSFEAALRLSEGYANVDVIGGDTLRFSEHFACPICGFTIGEMEPRLFSFNAPFGACPECDGLGVKLTVDMDLVVPDPSMTLAQGAIAPWNPISSQYYPELLAQAATAFKVRMDVPFKKLTKRERNVVLNGSDGKPFHFHYENDFGGVRDVDVPFEGVLTNISRRYAETNSDFTRQQMRGYMTALPCPVCHGKRLNRQALAVKISGRDIAEVSDLAIKDALPFFKQVHLSEAETVIAQPIVKEVVDRLTFLVNVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMRAADYLIDVGPGAGEHGGRIMASGTPKQVARVRKSITGQYLSGRKFIPVPLKRRPGNGKVIRLEGASDHNLKHINVDFPLGKFIVVSGVSGSGKSTLVNSILRRALAQKLNHNSEKPGPYDKILGYKNIEKLINIDQSPIGRTPRSNPATYTSVFDDIRGLFAETNEAKLRGYKKGRFSFNIKGGRCENCKGDGIIKIEMNFLPDVYVPCEVCHGKRYNSETLEVTYKGKNIAEVLDMTVEEATAFFKNIPKIRRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLASELQKLSTGKNFYILDEPTTGLHTDDIKRLLEVLERLVDEGNTVLVIEHNLDVVKTADWVIDLGPEGGDGGGQVIATGTPEEVAEVADSYTGQYLKPVLIRDTKRTKEAAAGSSKQAKATKTSTK
>NC_013199.1|WP_005688715.1|967396_969412_+|excinuclease-ABC-subunit-UvrB
MIERIADRKFDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAINDEIDKLRHSATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQLVDIQFDRNDIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVIGTRDHVAIFPATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIEMMREMGFTSGIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDRARKQMLINYGFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIRPTGLLDPKIEVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVRYLHSDIKTLERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERSLIQTIGRASRNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIRAAISTYEQSDDEKADAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAASLRDTILELQADMS
>NC_013199.1|WP_005688713.1|966356_967004_+|HD-domain-containing-protein
MGMHQFIQGLSNLETLRRAPGFFKYQEHSVAAHSFKVAEIAQMLGDVEELAGNKVNWQMLYEKSLNHDYTERFIGDIKTPVKYATPTLRQMLADVEATMTENFIKNEIPHDFQDRYRRRLSEGKDETLEGQILSVADKIDLLYEGFGEIEKGNPEQVFLDIYSESLSTILQFKNRPSVRYFLDEVLPDMLDEKFASRDQLAKLTKETMAEHETGK
>NC_013199.1|WP_005688708.1|962733_963399_+|ABC-transporter-ATP-binding-protein
MAILTARQLTKQYAGEAHPALDHANLTIEQGEFVAIVGPSGSGKSTLLHLLGGIDQPTSGEVRLYDTDIYALNQTQLAIFRRRQVGLIYQFYNLIPNLTVAENITLPADLDGRSIKEAVLTEMLTTLGLVEKASALPNQLSGGQQQRVAIGRALINHPAVILADEPTGNLDRRNSQDVMTLLRQANIKQGQTLVVITHDPDIASQADRIVRIDDGVVSGGR
>NC_013199.1|WP_005688706.1|961623_962634_+|HAMP-domain-containing-histidine-kinase
MVKHAYWTMPETRQVFQLTAILIGILWTVLLLTSITVPDMRIWLVLVGGLATGISVWLTWCWARKFSYHFDQALLQLDMTKETEDNYLIDRNDEGLFSDFNNRLYHYARQMQAEREAIKRDRDHLNEAITDIAHQLRTPLAANSNLLEMMTESNWKTTRLALQAQQQHQAQLIEQLILLAKVDTHTLSQRREIVVLTDLGKAALSPFLRQIADKEITVDWQVPPALTINVNSVLVKEAFANVFKNAVAHTPVGGRMSVRGIGDPVRTRLMIMNTGQPIAAQDLPHLFERFYRGQYATANNVGIGLAIAAGITTANDGRLTAANTANGVQMTFEFFR
>NC_013199.1|WP_005688705.1|960983_961631_+|response-regulator-transcription-factor
MTYLIIEDEPALGKTLQTYFSRDEEVWLAATLAKATTIVKTEHPALIILDLGMPDGDGLAWLKRWRAYLTAKVIVLTANDDESTTIAGLDLADDYVVKPVSLKVLKARIAKQLPGESQQFGAVALNLRTGQVTKNGKPVRLTSAEQRLLAYFFVNPNQILTREQLLAALWDTREQFVADNTLTVTIKRLREKLEDDPAKPTLIRTVRGMGYFIDG
>NC_013199.1|WP_005688704.1|958993_960721_+|phospho-sugar-mutase
MSYRDTYQQWVDEPTLDPELKTDLKKMADDETTKEEAFAEPMAFGTAGMRGVLGAGIGRMNIYTVRQATEGLARFMDTLTDETKARGVAISYDSRYMSQEFAYQSAGVLGAHGIKSYVFDQLRPTPELSFAVRHLKTYAGIMITASHNPKQYNGYKIYGPDGGQMPPEESDKITKYARSADDLFAIKALNVHELRAKDLMQPIGEDVDEAYYAEVATVTINHDLIKTVGKNMSLVYSPLHGTGRIPAQMVLRNAGFENFRLVAKQSVADPEFATTPFPNPEFAQVFDLPIELGKKIGADVLIATDPDADRLGTAVKVGDHYQLLTGNQIASVLLHYILEARKQAGTLPKNGAVVKSIVSTELATAIAKDYGVDMINVLTGFKFIGDQIKHFQATGEHEFLFGFEESYGYLIKPFVRDKDAIQSTVLLAEVAAYYQSQGKTLWDGVQELYKKYGYYAEKTVGVDFEGVDGPKQMANLMTKFREEQPDDFAGVKIAKVEDFLSQEAKSADGTVEKLTMPSSNVLKYILADGTWIAIRPSGTEPKVKFYVGTKADTDAKAQEKLDAFEKALDAFRKEA
>NC_013199.1|WP_005684511.1|957794_958742_+|thioredoxin-disulfide-reductase
MAKKYDVIVIGAGPGGMTAALYASRANLSVLMLDRGVYGGQMNNTAEVENYPGYKSILGPDLGQKMYDGATQFGAEYAYGNVISVQNHGATKLVKTDEDEFEAKAIVIATGAEHKKLGVPGEEAFSGRGVSYCAVCDGAFFKDRELAVIGGGDSAIEEGLYLTQMAKKVTVIHRRDQLRAQQIIQKRAFANDKMHFVWNAQVQEIQGDDMKVTGVKYRDKETGEEHVLPVAGVFIYVGIMPMTEPFQDLGILDDHGWIPTDEHMRTKVPGIFAIGDVRAKDLRQITTAVGEGGTAGQGVFNYIQSLNDTSVEVKA
>NC_013199.1|WP_015764377.1|956673_957729_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MPTKIAVLGAGSWGTVLANLLTENGHEVDLWSHNLKQVATMRETRKNEHYLGAEFTLHDALHVTADLGQALDQANVILFVVPTNAIRSVAEQIRPILQAHRGRGEQPIIVHAAKGLERGSELRISQVLADVLPKELIQGIVVISGPSHAEDVATHDITTLTAASADLSLAKKVQRLFMNDYFRLYTNTDVIGVEIGAALKNVIAIGAGALHGLGYGDNTKAALMTRGLAEISRVGVKLGADPLTFIGLSGVGDLIVTCTSVHSRNWRAGNALGQGEKLPDVLKNMGMVVEGVSTTKVAHHMASELGVDMPITDAIYQVLYEDAPIRTVITDLMKRTGKPEFDFDNASLQKP
>NC_013199.1|WP_005684522.1|973624_974512_+|RNase-adapter-RapZ
MTESLDLVIITGMSGAGKTVAMQAFEDLGYFCVDNMPPALLPKFWELVKESGKISKVALVVDLRSRAFYDQIIDMLANLDNNAYVHSRILFLDATDEELVSRYKETRRSHPLAMEGRLMDGIKKERVLLTELRNRAQVVIDTTTLSPRQLREKIFLNFKENNSQPAFHIEVMSFGFKYGLPIDADIVMDVRFLPNPFYIKAYRPKTGLDPDVYDYVMDNEDAESFYNKFYALLAEIMPKYKAEGKTSVTIAIGCTGGQHRSVAFAERIGKAFSDAYAVDITHRDIKKHKETVNRS
>NC_013199.1|WP_005688720.1|974508_975537_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MSRETKFIRVIRGRRPKVVVIGGGTGLPVILHSLHEQDADVTAIVTVADDGGSSGTIRNYINVVPPGDIRNVLVALSELPSLYLDIFQYRFNTTDAFFAGHAIGNLIIAALSEMKGGIFPAVQQLSEMMQVDGHVYPASNTPLTLNAEFTDGTKLSGEAEITAAGKNIKHISVSETDPANGEPKAVQEVIDAIMDADVVVLGPGSLFTSILPNLMIGNLGDAVKKTKAEVIYIVNIMTQKGETQNFTDADHVRVLNEQMGENFVDTVLVNIEPVPDNYLDHQKYNEILTPVKHNYQGLRDMGCRVISEDFLKLRDRGVFHDGDKVAKEILNLAFQVSAKTRR
>NC_013199.1|WP_005684524.1|975541_976489_+|DNA-binding-protein-WhiA
MASFASIVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYSLIRQVYHHEANLVVHRKMKLKKNYQYIVRLTEGVNDILSDLAILDPTTMAISTTVPASVLKEPQRMRSYLRGAFLASGSVNNPETSRYHLEIYSLYADHNAGILKMMNHFHLNARTVERRSGYIVYLKEAEKIADFLQVIGATNAMLKFEDIRIVRDMRNSVNRLVNCETANMNKTIDAAQKQIENINYLKDHVGLDNLPTKLREIAVLRLAHPDVSLQELGAMVPGGTISKSGVNHRLRKLNQIAEGYQQPEDA
>NC_013199.1|WP_005684525.1|976779_977235_+|MarR-family-transcriptional-regulator
MVKPITLDEQLCFAIYKAQKQYNHFYAQALAPFKLTYPQYITLLSLYEHGTMSVKQVGQTLELDSGTLTPLMKRLEKDGWINRKRSTEDERRVDVSLTKKALDARDQIFEHVGSCMKLMNLPQSEYDHIKSEVARVDEHLSAIADNAYPEA
>NC_013199.1|WP_005684526.1|977353_977944_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MLVPTVVEQTSRGERAYDIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILIHQPSGGAQGQQTEIEIAAEEILKTRKKMNQILADATGQTVEQIKKDTERDHYMSAQEAKDYGLIDDILVNKNNQK
>NC_013199.1|WP_005684527.1|979139_980177_+|SorC-family-transcriptional-regulator
MHTELAWLKAIAPDLMGVVTKRYQVLQFINWMAPVGRRTLAEQMKISERALRTETDFLRGQGLLESSKSGMVLTAKGLETFHGLDHLMNQLLGIKDDEKRLATHLEIDHCLVVSGDADQSSRVLDELGKTLNSTLQLLLPPGHLTIAVMGGTTMAHLASQLTFQLSAGRELSFVPARGGLGEAVTIQANSIAAAMAEATDSKYRALYVPENLSSESYESLIKEPSVKEVLTLIDKAQVVIHSVGDALVMAKRRGMSPDTIRMLKAKHAVAEAFGVFYDAEGKVVYKIPQIGLQLADLDHIPYVFAVAAGKSKAKAIAAYMQHAPSRTWLLTDVGATNSILTGATR
>NC_013199.1|WP_005684528.1|980213_981236_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVKIGINGFGRIGRLAFRRIYELGAKSNDIQVVAINDLTSPTMLAHLLKYDSTHGTFPGEVSATDNGIVVDGKEYRVYAEPQAQNIPWVKNDGVDYVLECTGFYTSAEKSQAHLDAGAKRVLISAPAGKIKTIVYNVNDDTLNADDKIVSAGSCTTNCLAPMAYFLNQEFGIEVGTMTTVHAYTSTQMLLDGPVRGGNLRAARSAAANTIPHSTGAAKAIGLVIPELNGKLQGHAQRVSVVDGSLTELVSILKTKNVTADQVNEAIKKHTENNPSFGWNEDEIVSSDVIGTTYGSIFDPTQTEVTTAGDYQLVKTVAWYDNEYGFTCQMIRTLLKFATL
>NC_013199.1|WP_005684529.1|981418_982609_+|phosphoglycerate-kinase
MAKLIVSDLDVKDKKVLIRVDFNVPIKDGVIGDDNRIVAALPTIQYVIDHGGKAILLSHLGRVKTEEDKAKLTLKPVAERLSELLKKPVTFVPATRGKELEDAIAKLNDGDVLLMENTRFEDLDGKKESGNDPELGKYWASLGDLFVNDAFGTAHRKHASNVGIASNMKQTAAGFLMEKEIKFLGDAVDNPKHPFIAILGGAKVSDKIGVIENLVPKADKILIGGGMTYTFYAAKGMSIGNSLVEKDKIDLAKKIMDQAGDKLLLPVDSVVAPEFSNDAPHKVVEGDIPDGYMALDIGPKTIQEFKDALKGAKTVVWNGPMGVFEMSNYAEGTLEVGRALGDLKDATTIIGGGDSTAAAKQLGIAPKITHISTGGGASLEYLEGKTLPGIAAISDK
>NC_013199.1|WP_005684530.1|982686_983442_+|triose-phosphate-isomerase
MRTPFIAGNWKMNKNPKETQAFLDAVKGKLPDASKVETVIGAPAIDLTTLVAGAEGTPLKTAAENCYFEDEGAFTGETSPKALKEMGVDYVIIGHSERRGYFHETDEDINKKAKAIFKNNLLPIICCGESLAQREAGQTEDWVASQIEAALAGLSADQVKVSVLAYEPIWAIGTGKTATADQAQEVVAHIRATVEKLYNKDTADAVRILYGGSVKPANVKELMAKPDIDGGLVGGASMDPDSFIALANYQD
>NC_013199.1|WP_005684531.1|983489_984794_+|phosphopyruvate-hydratase
MSIITDVLAREVLDSRGNPTVEVELYTEDGGFGRALVPSGASTGEHEAVELRDGDKDRFGGKGVLKAVDHVNNEIAKAVIGLDVTEQRLIDQTMIDLDGTPNKGKLGANAILGVSLAAARAAADEVGLPLYQYLGGPNAHVLPTPMMNVLNGGAHSTNTVDFQEFMIMPVGAKSVREAVRMGSETFHALQALLKSKGDITAVGDEGGFAPNLKDNEEAFELLVEAIKKAGYKPGDDIALAFDVAASEMYDADTKTYTTKWSNPDKKYTTEEWTNMIDGYINKYPIVSVEDPIDENDWEGWQTFTEKMGDKVQIVGDDLFVTNTDYLKKGIDMGVANSILIKLNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDTTIADLVVATNAGEIKTGSMSRTDRIAKYNQLMRIEDQLGAQSQYKGRKSFYNVKAID

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

682104 : 711183

uncultured_Caudovirales_phage(25.0%)

tail,head,integrase,terminase,portal,transposase,capsid

attL 672753:672767|attR 706066:706080

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
672753:672767	attL	NA	NA	NA	NA
WP_015764265.1\|682104_683217_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_005691887.1\|683517_684495_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	5.2e-52	38.3
WP_005691889.1\|684525_686724_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_005691892.1\|686710_687118_-	GtrA family protein	NA	NA	NA	NA
WP_014571175.1\|687837_688533_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.9e-34	37.9
WP_005684087.1\|688529_689822_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005684085.1\|689964_690345_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA
WP_005691897.1\|690626_691286_+	nitroreductase family protein	NA	NA	NA	NA
WP_005691899.1\|691325_692432_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_014571176.1\|692704_695572_-	hypothetical protein	NA	NA	NA	NA
WP_014571177.1\|696263_697835_+	hypothetical protein	NA	NA	NA	NA
WP_015764274.1\|698243_699395_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	9.1e-56	34.4
WP_080515408.1\|699454_700033_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	2.2e-05	41.5
WP_015764276.1\|700157_700367_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015764277.1\|700378_700654_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003604800.1\|700733_701129_+	hypothetical protein	NA	NA	NA	NA
WP_015764280.1\|701478_701751_+	hypothetical protein	NA	NA	NA	NA
WP_015764281.1\|701747_701936_+	hypothetical protein	NA	NA	NA	NA
WP_041247953.1\|701919_702747_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	1.2e-12	32.5
WP_015764283.1\|702739_704164_+	virulence protein	A0A1W6JQD6	Staphylococcus_phage	1.7e-64	37.8
WP_015764284.1\|704443_704866_+	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	1.5e-11	40.2
WP_172619743.1\|704947_705322_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	3.8e-11	39.8
WP_003593553.1\|705446_705917_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_005716050.1\|705913_707617_+\|terminase	terminase	E9LUI0	Lactobacillus_phage	6.0e-120	40.2
706066:706080	attR	NA	NA	NA	NA
WP_005690490.1\|707582_707762_+	hypothetical protein	NA	NA	NA	NA
WP_015764286.1\|707766_708951_+\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	1.1e-59	35.2
WP_015764287.1\|708937_710509_+\|capsid	phage major capsid protein	A0A2H4J9X8	uncultured_Caudovirales_phage	2.7e-34	34.8
WP_003586097.1\|710567_710858_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_013245616.1\|710841_711183_+\|head	phage head closure protein	I7AUE6	Enterococcus_phage	1.2e-08	38.4

DBSCAN-SWA_2

843136 : 920646

Lactobacillus_phage(86.0%)

tail,head,integrase,terminase,tRNA,protease,portal,holin,capsid

attL 842574:842601|attR 896124:896151

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
842574:842601	attL	NA	NA	NA	NA
WP_015764314.1\|843136_844264_-\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	2.4e-210	97.6
WP_015764315.1\|844371_844635_-	hypothetical protein	B4XYT0	Lactobacillus_phage	1.9e-09	40.2
WP_015764316.1\|844732_844990_-	hypothetical protein	NA	NA	NA	NA
WP_005714764.1\|845224_846406_-	restriction endonuclease subunit S	E3T4D5	Cafeteria_roenbergensis_virus	2.0e-18	25.5
WP_005712700.1\|846496_846715_-	S24 family peptidase	NA	NA	NA	NA
WP_050751723.1\|846786_847407_-	helix-turn-helix transcriptional regulator	O64370	Lactobacillus_phage	5.1e-69	65.4
WP_015764318.1\|847618_847861_+	helix-turn-helix transcriptional regulator	B8R673	Lactobacillus_phage	7.6e-13	56.1
WP_015764319.1\|847884_848589_+	phage antirepressor KilAC domain-containing protein	B4XYR8	Lactobacillus_phage	9.1e-115	88.7
WP_015764320.1\|848589_848850_+	hypothetical protein	NA	NA	NA	NA
WP_015764321.1\|848842_849148_-	hypothetical protein	NA	NA	NA	NA
WP_015764322.1\|849222_849579_+	DUF771 domain-containing protein	U5U4L9	Lactobacillus_phage	1.5e-57	91.5
WP_015764324.1\|849718_849937_+	hypothetical protein	A0A0P0I7L5	Lactobacillus_phage	1.3e-08	96.7
WP_005716154.1\|849938_850109_+	hypothetical protein	NA	NA	NA	NA
WP_015764325.1\|850120_850996_+	recombinase RecT	A0A1X9I5N6	Streptococcus_phage	4.4e-58	52.2
WP_005711350.1\|851015_851780_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	2.6e-75	53.6
WP_015764327.1\|851795_852752_+	DnaD domain protein	A0A1B0Y2R2	Lactobacillus_phage	2.8e-127	91.8
WP_015764328.1\|852764_853250_+	single-stranded DNA-binding protein	U5U726	Lactobacillus_phage	8.0e-62	87.0
WP_015764329.1\|853558_853774_+	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	1.3e-19	67.1
WP_015764330.1\|853770_853962_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015764331.1\|854331_854781_+	hypothetical protein	A0A0P0ID70	Lactobacillus_phage	2.7e-64	87.9
WP_015764332.1\|854827_855082_+	hypothetical protein	A8YQM4	Lactobacillus_phage	1.2e-37	95.2
WP_015978893.1\|855078_855492_+	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	5.9e-74	100.0
WP_015764333.1\|855504_855969_+	hypothetical protein	A0A0P0IXF6	Lactobacillus_phage	7.2e-20	98.0
WP_015764334.1\|856350_856761_+	hypothetical protein	Q6J1U9	Lactobacillus_phage	6.8e-62	80.9
WP_015764335.1\|856757_857198_+	hypothetical protein	C1KFF0	Lactobacillus_virus	2.2e-26	42.6
WP_015764337.1\|857392_857725_+	hypothetical protein	A0A2D1GPA2	Lactobacillus_phage	5.0e-31	67.9
WP_014569479.1\|857721_857961_+	hypothetical protein	NA	NA	NA	NA
WP_015764338.1\|857957_858350_+	hypothetical protein	B4XYT8	Lactobacillus_phage	2.5e-66	96.9
WP_015992527.1\|858782_859211_+	DUF1492 domain-containing protein	B4XYT9	Lactobacillus_phage	1.3e-76	100.0
WP_015764340.1\|859675_860341_+	hypothetical protein	NA	NA	NA	NA
WP_015764341.1\|860983_862201_+	hypothetical protein	A0A2D1GPQ9	Lactobacillus_phage	1.8e-235	97.3
WP_015764342.1\|862187_862718_+	HNH endonuclease	A0A0P0IX70	Lactobacillus_phage	7.2e-56	61.5
WP_015764343.1\|862820_863144_+	hypothetical protein	Q8LT99	Lactobacillus_phage	1.1e-48	91.6
WP_015764344.1\|863161_863326_+	hypothetical protein	A8YQN6	Lactobacillus_phage	6.7e-05	100.0
WP_015764345.1\|863362_864157_+	HNH endonuclease	B4XYU4	Lactobacillus_phage	6.6e-146	95.8
WP_005686963.1\|864357_864813_+\|terminase	P27 family phage terminase small subunit	B4XYP1	Lactobacillus_phage	6.7e-79	98.0
WP_015764346.1\|864834_866547_+\|terminase	terminase large subunit	B4XYP2	Lactobacillus_phage	0.0e+00	97.4
WP_003661399.1\|866558_866750_+	hypothetical protein	A0A2D1GPE7	Lactobacillus_phage	3.0e-28	100.0
WP_015764347.1\|866755_868009_+\|portal	phage portal protein	Q8LTC2	Lactobacillus_phage	1.5e-229	95.7
WP_015764348.1\|867962_868592_+\|head,protease	HK97 family phage prohead protease	B4XYP5	Lactobacillus_phage	3.3e-116	100.0
WP_015764349.1\|868633_869836_+\|capsid	phage major capsid protein	B4XYP6	Lactobacillus_phage	9.8e-210	95.7
WP_005712764.1\|869853_870093_+	Ig-like domain-containing protein	A0A2D1GPN4	Lactobacillus_phage	1.6e-31	97.5
WP_015764350.1\|870103_870463_+\|head,tail	phage gp6-like head-tail connector protein	U5U4K5	Lactobacillus_phage	1.2e-59	97.5
WP_041247957.1\|870452_870782_+\|head,tail	head-tail adaptor protein	P94213	Lactobacillus_phage	1.5e-56	97.2
WP_015764352.1\|870781_871168_+	HK97 gp10 family phage protein	B4XYP9	Lactobacillus_phage	5.0e-67	98.4
WP_015764353.1\|871167_871554_+	hypothetical protein	U5U3W4	Lactobacillus_phage	7.0e-69	96.9
WP_015764354.1\|871587_872205_+\|tail	phage-related major tail protein	U5U3Z7	Lactobacillus_phage	3.8e-109	97.5
WP_003661382.1\|872304_872718_+	hypothetical protein	A0A2D1GPL7	Lactobacillus_phage	6.4e-52	100.0
WP_015764355.1\|872840_877706_+\|tail	phage tail tape measure protein	Q9T0X1	Lactobacillus_phage	0.0e+00	92.5
WP_015764356.1\|877706_879629_+\|tail	phage tail family protein	B4XYQ4	Lactobacillus_phage	1.5e-305	81.6
WP_015764357.1\|879628_882130_+\|tail	phage tail protein	B4XYQ5	Lactobacillus_phage	0.0e+00	74.0
WP_015764358.1\|882126_882414_+	hypothetical protein	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	4.2e-18	48.9
WP_014569500.1\|882567_882861_+	hypothetical protein	B4XYQ7	Lactobacillus_phage	5.3e-45	94.8
WP_015764360.1\|882850_883264_+\|holin	phage holin	A0A0N7IR91	Lactobacillus_phage	1.6e-42	94.2
WP_015764361.1\|883274_884459_+	LysM peptidoglycan-binding domain-containing protein	A0A0P0HRN9	Lactobacillus_phage	9.6e-202	88.3
WP_005688600.1\|885177_885831_-	hypothetical protein	NA	NA	NA	NA
WP_005713641.1\|886009_887194_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.1e-141	66.0
WP_005688606.1\|887723_889217_+	MFS transporter	NA	NA	NA	NA
WP_005688608.1\|889392_889863_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_005687221.1\|890084_891563_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_005688612.1\|891559_892285_+	DUF4811 domain-containing protein	NA	NA	NA	NA
WP_005688613.1\|892349_893021_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_005687226.1\|893441_895853_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	69.1
WP_005688618.1\|898021_898732_+	rRNA pseudouridine synthase	NA	NA	NA	NA
896124:896151	attR	NA	NA	NA	NA
WP_005688621.1\|898817_899033_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_005688624.1\|899163_899994_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_005687236.1\|899990_900491_-	NUDIX hydrolase	NA	NA	NA	NA
WP_005688627.1\|900887_901361_+	glutathione peroxidase	NA	NA	NA	NA
WP_015764365.1\|901467_902676_+	putative C-S lyase	NA	NA	NA	NA
WP_015764366.1\|902803_904132_-	metallophosphoesterase	NA	NA	NA	NA
WP_005687240.1\|904347_904614_+	ACT domain-containing protein	NA	NA	NA	NA
WP_005688634.1\|904768_906112_+	PFL family protein	NA	NA	NA	NA
WP_014571209.1\|906278_907346_+	competence protein	NA	NA	NA	NA
WP_005687248.1\|907586_908222_-	DsbA family protein	NA	NA	NA	NA
WP_005688639.1\|908291_908885_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_005713649.1\|909051_909729_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_005687253.1\|909730_910528_+	NAD kinase	NA	NA	NA	NA
WP_005688644.1\|910527_911430_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_005688645.1\|911573_912632_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_005688646.1\|912849_913488_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_005688647.1\|913507_914326_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_005688649.1\|914530_915571_-	lactonase family protein	NA	NA	NA	NA
WP_005688651.1\|915814_916189_+	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_003564153.1\|916238_916508_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_005713651.1\|916622_917612_-	GMP reductase	Q4ZCY7	Staphylococcus_virus	1.1e-137	71.6
WP_005688657.1\|918807_919650_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_072137696.1\|919916_920135_+	hypothetical protein	NA	NA	NA	NA
WP_005688659.1\|920136_920646_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA

DBSCAN-SWA_3

1009674 : 1064425

Lactobacillus_phage(17.65%)

tail,head,integrase,terminase,tRNA,portal,capsid

attL 1003378:1003393|attR 1058883:1058898

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1003378:1003393	attL	NA	NA	NA	NA
WP_005688741.1\|1009674_1010139_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_005688742.1\|1010344_1011241_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.5e-18	27.5
WP_005688746.1\|1012681_1013224_-	exonuclease	A0A1S5SFA9	Streptococcus_phage	8.2e-23	41.0
WP_014571235.1\|1013235_1013994_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	6.2e-61	48.1
WP_014571236.1\|1014519_1015383_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_005688750.1\|1015419_1017534_+	sodium:proton antiporter	NA	NA	NA	NA
WP_005684568.1\|1017756_1018296_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005688752.1\|1018309_1019398_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.4e-37	46.0
WP_005684570.1\|1019491_1020316_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	8.9e-13	26.7
WP_005684571.1\|1020305_1021139_+	ABC transporter permease	NA	NA	NA	NA
WP_005684572.1\|1021122_1022196_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005688758.1\|1022405_1022978_-	DUF5067 domain-containing protein	Q6SEF8	Lactobacillus_prophage	2.1e-29	48.1
WP_005688760.1\|1023005_1023371_-	hypothetical protein	A0A0P0I7G8	Lactobacillus_phage	3.9e-45	77.8
WP_005688762.1\|1023692_1023884_+	hypothetical protein	NA	NA	NA	NA
WP_005688764.1\|1024076_1026869_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	1.5e-72	29.3
WP_005688766.1\|1026944_1027625_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015764389.1\|1027658_1028798_-	ABC transporter permease	NA	NA	NA	NA
WP_005688770.1\|1028787_1029522_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-25	33.2
WP_005684581.1\|1029781_1030639_+	TIGR00159 family protein	NA	NA	NA	NA
WP_005688772.1\|1030635_1031733_+	hypothetical protein	NA	NA	NA	NA
WP_005688773.1\|1031761_1033126_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_014571238.1\|1033554_1035366_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1I9J5	Paramecium_bursaria_Chlorella_virus	2.0e-89	37.2
WP_015764390.1\|1035515_1037321_-	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_005716007.1\|1037394_1037886_+	VanZ family protein	NA	NA	NA	NA
WP_005684587.1\|1037956_1038688_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_005688784.1\|1039165_1040119_+	type II secretion system F family protein	NA	NA	NA	NA
WP_005684590.1\|1040121_1040442_+	type II secretion system protein	NA	NA	NA	NA
WP_005688785.1\|1040438_1040861_+	type II secretion system protein	NA	NA	NA	NA
WP_005688787.1\|1040830_1041142_+	hypothetical protein	NA	NA	NA	NA
WP_014569400.1\|1041101_1041569_+	hypothetical protein	NA	NA	NA	NA
WP_005688791.1\|1041565_1041889_+	hypothetical protein	NA	NA	NA	NA
WP_015764392.1\|1042293_1043307_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_005688795.1\|1043575_1044031_+	hypothetical protein	NA	NA	NA	NA
WP_005684599.1\|1044245_1045610_+	amino acid permease	NA	NA	NA	NA
WP_005688798.1\|1045641_1046406_+	hypothetical protein	NA	NA	NA	NA
WP_014571241.1\|1046402_1047242_+	glycosyl transferase	NA	NA	NA	NA
WP_005688802.1\|1047242_1048199_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_005688804.1\|1048195_1049068_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_014571243.1\|1049291_1051586_+	alpha-galactosidase	NA	NA	NA	NA
WP_005716031.1\|1052251_1053400_-\|integrase	site-specific integrase	A0A097BYJ7	Leuconostoc_phage	1.0e-30	28.9
WP_005716033.1\|1053493_1054147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015764393.1\|1054275_1054554_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015764394.1\|1054621_1055017_+	hypothetical protein	NA	NA	NA	NA
WP_064559732.1\|1055121_1055319_+	hypothetical protein	NA	NA	NA	NA
WP_015764397.1\|1055366_1055636_+	hypothetical protein	NA	NA	NA	NA
WP_021354504.1\|1055619_1056447_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	1.2e-12	32.9
WP_015764399.1\|1056439_1057864_+	virulence protein	A0A1W6JQD6	Staphylococcus_phage	1.3e-64	38.1
WP_013245609.1\|1058138_1058480_+	hypothetical protein	NA	NA	NA	NA
WP_171032397.1\|1058562_1058937_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	6.5e-11	39.8
1058883:1058898	attR	NA	NA	NA	NA
WP_003593553.1\|1059061_1059532_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_015764401.1\|1059528_1061232_+\|terminase	terminase	E9LUI0	Lactobacillus_phage	2.0e-120	40.4
WP_013245613.1\|1061197_1061377_+	hypothetical protein	NA	NA	NA	NA
WP_015764402.1\|1061381_1062566_+\|portal	phage portal protein	A0A2H4J5A4	uncultured_Caudovirales_phage	1.7e-60	34.5
WP_015764403.1\|1062552_1064079_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	6.0e-39	26.1
WP_015764404.1\|1064134_1064425_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

DBSCAN-SWA_4

2424885 : 2443107

Bacillus_phage(50.0%)

bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005692260.1\|2424885_2425176_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005692258.1\|2425303_2426386_+	aldo/keto reductase	NA	NA	NA	NA
WP_005692255.1\|2426685_2428041_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_005692253.1\|2428220_2428631_-	hypothetical protein	NA	NA	NA	NA
WP_005692250.1\|2430082_2432275_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	1.6e-37	25.7
WP_005692249.1\|2432523_2432658_-	hypothetical protein	NA	NA	NA	NA
WP_005692247.1\|2433314_2434148_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_005692246.1\|2434140_2434917_+	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014571574.1\|2435036_2435297_-	hypothetical protein	NA	NA	NA	NA
WP_005692238.1\|2436764_2437064_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005692236.1\|2437242_2437401_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_005686851.1\|2437869_2438055_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_005686849.1\|2438114_2438300_-	hypothetical protein	NA	NA	NA	NA
WP_005692232.1\|2438685_2438871_-	hypothetical protein	NA	NA	NA	NA
WP_005692230.1\|2438920_2439727_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005692227.1\|2440047_2440488_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_005692225.1\|2440542_2441970_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	4.6e-33	26.4
WP_005692222.1\|2442142_2442475_-	hypothetical protein	NA	NA	NA	NA
WP_014571576.1\|2442765_2443107_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage