CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	10 crisprs	cas3,DEDDh,DinG,csa3,WYL	9	2	14
NC_017332	Staphylococcus aureus subsp. aureus TW20 plasmid pTW20_2, complete sequence	0 crisprs	NA	0	0	0
NC_017352	Staphylococcus aureus subsp. aureus TW20 plasmid pTW20_1, complete sequence	0 crisprs	csa3	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017331_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_1

478907-479007

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017331_1

>merge|NC_017331|1|478907-479007|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>NC_017331|1|1|478907-479007|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000991007.1\|476658_478047_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NC_017331.1\|WP_000421410.1\|481822_482401_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NC_017331.1\|WP_001789518.1\|478131_478233_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000746687.1\|472151_472778_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
NC_017331.1\|WP_000845143.1\|488724_488955_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378900
NC_017331.1\|WP_000394699.1\|480097_480760_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000466748.1\|470189_470441_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NC_017331.1\|WP_000956132.1\|479023_479980_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NC_017331.1\|WP_000211676.1\|470479_470689_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000930486.1\|473222_474746_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NC_017331.1\|WP_001289311.1\|475822_476578_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NC_017331.1\|WP_000264071.1\|483706_485173_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NC_017331.1\|WP_000424966.1\|485197_486739_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NC_017331.1\|WP_000158374.1\|470866_471448_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_017331.1\|WP_000633907.1\|488026_488227_-\|DUF3173-domain-containing-protein	unknown	unknown	gnl\|CDD\|371495
NC_017331.1\|WP_000237797.1\|486806_488000_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_017331.1\|WP_000793010.1\|482400_483669_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NC_017331.1\|WP_000763768.1\|480902_481310_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|378584
NC_017331.1\|WP_000868248.1\|471513_471897_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000052781.1\|474761_475331_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000991007.1\|476658_478047_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NC_017331.1\|WP_000421410.1\|481822_482401_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
NC_017331.1\|WP_000746687.1\|472151_472778_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.67126e-71
NC_017331.1\|WP_000845143.1\|488724_488955_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378900	pfam12645, HTH_16, Helix-turn-helix domain. This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.	2.04673e-25
NC_017331.1\|WP_000466748.1\|470189_470441_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09
NC_017331.1\|WP_000956132.1\|479023_479980_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
NC_017331.1\|WP_000930486.1\|473222_474746_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NC_017331.1\|WP_001289311.1\|475822_476578_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.03864e-88
NC_017331.1\|WP_000264071.1\|483706_485173_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NC_017331.1\|WP_000424966.1\|485197_486739_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NC_017331.1\|WP_000158374.1\|470866_471448_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.78414e-49
NC_017331.1\|WP_000633907.1\|488026_488227_-\|DUF3173-domain-containing-protein	gnl\|CDD\|371495	pfam11372, DUF3173, Domain of unknown function (DUF3173). This family of proteins with unknown function appears to be restricted to Firmicutes. These proteins appear to be distantly related to HHH domains and are therefore likely to be DNA-binding. Genomic environment-visualisation confirms the likely function as being DNA-binding, as this short protein lies very closely between an integrase and a replication protein (http://www.microbesonline.org/).	2.02242e-22
NC_017331.1\|WP_000793010.1\|482400_483669_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	3.16192e-170
NC_017331.1\|WP_000763768.1\|480902_481310_-\|general-stress-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
NC_017331.1\|WP_000237797.1\|486806_488000_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.36769e-47
NC_017331.1\|WP_000052781.1\|474761_475331_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124

>NC_017331.1|WP_001789518.1|478131_478233_+|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNSVVIGGKGK
>NC_017331.1|WP_000991007.1|476658_478047_-|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFDSNDNAALTSH
>NC_017331.1|WP_001289311.1|475822_476578_+|NADPH-dependent-oxidoreductase
MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>NC_017331.1|WP_000052781.1|474761_475331_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>NC_017331.1|WP_000930486.1|473222_474746_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>NC_017331.1|WP_000746687.1|472151_472778_-|NDxxF-motif-lipoprotein
MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>NC_017331.1|WP_000868248.1|471513_471897_-|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
>NC_017331.1|WP_000158374.1|470866_471448_+|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE
>NC_017331.1|WP_000211676.1|470479_470689_-|hypothetical-protein
MTTQSFIFMNIILLDGATQRHPFFICQILAFLFPKFPHINLLLFNPILSTFSNIIIHIDHFHANKKDDN
>NC_017331.1|WP_000466748.1|470189_470441_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>NC_017331.1|WP_000956132.1|479023_479980_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>NC_017331.1|WP_000394699.1|480097_480760_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEETDLRKPF
>NC_017331.1|WP_000763768.1|480902_481310_-|general-stress-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>NC_017331.1|WP_000421410.1|481822_482401_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>NC_017331.1|WP_000793010.1|482400_483669_+|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVQ
>NC_017331.1|WP_000264071.1|483706_485173_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>NC_017331.1|WP_000424966.1|485197_486739_+|glutamine-hydrolyzing-GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>NC_017331.1|WP_000237797.1|486806_488000_-|site-specific-integrase
MVKDPIKKAKNGTYYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLLMKPEELSENKDKMTFKHYIFEIFLPWYKTQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKCKSSYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSNYRFVEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIERYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETTLGTYGHLYPNSNFEVANKLNGAISFKEAKQNYDTSPKNQFTVDYLRNKEMKKVQ
>NC_017331.1|WP_000633907.1|488026_488227_-|DUF3173-domain-containing-protein
MITVTKKDLVELGYGTSFSADIIKKAKELMITKGHIYYQSRKLDRVPREAVEEILGIRFSNENRSE
>NC_017331.1|WP_000845143.1|488724_488955_-|helix-turn-helix-domain-containing-protein
MKTAYPRVPFPLIVKATDGDVEAINQIVKHYRGYTSKRSLRRMTDEYGNSHMVIDETLRGRMETKLISKILSFEIK

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Crispr_ID: NC_017331_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_2

742680-742772

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017331_2

>merge|NC_017331|2|742680-742772|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>NC_017331|2|2|742680-742772|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000359086.1\|739363_739780_+\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|226896
NC_017331.1\|WP_000808902.1\|733365_734304_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NC_017331.1\|WP_000362972.1\|745583_746384_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_017331.1\|WP_000365354.1\|744880_745600_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NC_017331.1\|WP_001021145.1\|739776_741438_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NC_017331.1\|WP_001788287.1\|737058_737580_+\|YwhD-family-protein	unknown	unknown	gnl\|CDD\|378039
NC_017331.1\|WP_000633782.1\|734514_735051_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_017331.1\|WP_000169042.1\|751557_751782_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NC_017331.1\|WP_001018677.1\|749111_749486_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NC_017331.1\|WP_000901764.1\|741826_742462_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NC_017331.1\|WP_001222133.1\|747187_747904_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_001200748.1\|738078_739089_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|181842
NC_017331.1\|WP_000655099.1\|739163_739271_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000180232.1\|735735_737031_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NC_017331.1\|WP_001045421.1\|748072_748861_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_017331.1\|WP_001553862.1\|750433_751363_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|225778
NC_017331.1\|WP_000735558.1\|746519_747026_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_001790232.1\|743875_744826_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NC_017331.1\|WP_000749059.1\|742840_743728_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NC_017331.1\|WP_000477504.1\|735219_735696_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000359086.1\|739363_739780_+\|DUF1934-domain-containing-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	2.62525e-58
NC_017331.1\|WP_000808902.1\|733365_734304_+\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	7.3194e-168
NC_017331.1\|WP_000362972.1\|745583_746384_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.35732e-24
NC_017331.1\|WP_000365354.1\|744880_745600_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
NC_017331.1\|WP_001021145.1\|739776_741438_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NC_017331.1\|WP_000633782.1\|734514_735051_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
NC_017331.1\|WP_001018677.1\|749111_749486_-\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
NC_017331.1\|WP_000901764.1\|741826_742462_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90
NC_017331.1\|WP_001045421.1\|748072_748861_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
NC_017331.1\|WP_001200748.1\|738078_739089_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
NC_017331.1\|WP_001788287.1\|737058_737580_+\|YwhD-family-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
NC_017331.1\|WP_000180232.1\|735735_737031_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	5.76708e-150
NC_017331.1\|WP_001553862.1\|750433_751363_-\|DMT-family-transporter	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	7.93315e-37
NC_017331.1\|WP_000169042.1\|751557_751782_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
NC_017331.1\|WP_001790232.1\|743875_744826_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.19191e-48
NC_017331.1\|WP_000749059.1\|742840_743728_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.54601e-73
NC_017331.1\|WP_000477504.1\|735219_735696_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11

>NC_017331.1|WP_000901764.1|741826_742462_+|endonuclease-III-domain-containing-protein
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>NC_017331.1|WP_001021145.1|739776_741438_+|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>NC_017331.1|WP_000359086.1|739363_739780_+|DUF1934-domain-containing-protein
MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>NC_017331.1|WP_000655099.1|739163_739271_+|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>NC_017331.1|WP_001200748.1|738078_739089_+|alcohol-dehydrogenase-AdhP
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>NC_017331.1|WP_001788287.1|737058_737580_+|YwhD-family-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>NC_017331.1|WP_000180232.1|735735_737031_+|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERLLRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQYGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>NC_017331.1|WP_000477504.1|735219_735696_+|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>NC_017331.1|WP_000633782.1|734514_735051_+|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>NC_017331.1|WP_000808902.1|733365_734304_+|aldo/keto-reductase
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED
>NC_017331.1|WP_000749059.1|742840_743728_+|ABC-transporter-substrate-binding-protein
MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>NC_017331.1|WP_001790232.1|743875_744826_+|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>NC_017331.1|WP_000365354.1|744880_745600_+|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>NC_017331.1|WP_000362972.1|745583_746384_+|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMSGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>NC_017331.1|WP_000735558.1|746519_747026_+|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>NC_017331.1|WP_001222133.1|747187_747904_+|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>NC_017331.1|WP_001045421.1|748072_748861_+|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>NC_017331.1|WP_001018677.1|749111_749486_-|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>NC_017331.1|WP_001553862.1|750433_751363_-|DMT-family-transporter
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>NC_017331.1|WP_000169042.1|751557_751782_-|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK

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Crispr_ID: NC_017331_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_3

858425-858507

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017331_3

>merge|NC_017331|3|858425-858507|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>NC_017331|3|3|858425-858507|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000098285.1\|847491_849432_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	unknown	unknown	gnl\|CDD\|224287
NC_017331.1\|WP_000855505.1\|864536_866642_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
NC_017331.1\|WP_000589260.1\|853600_854578_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NC_017331.1\|WP_001790641.1\|859963_860065_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000876318.1\|868438_869410_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
NC_017331.1\|WP_000429014.1\|858955_859873_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NC_017331.1\|WP_001790169.1\|845025_845232_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000692521.1\|864175_864574_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|224694
NC_017331.1\|WP_000499195.1\|868244_868400_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000983677.1\|851597_853379_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NC_017331.1\|WP_000663030.1\|856324_857383_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NC_017331.1\|WP_000708692.1\|845319_846030_+\|allophanate-hydrolase-subunit-1	unknown	unknown	gnl\|CDD\|224960
NC_017331.1\|WP_000022323.1\|846013_847018_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NC_017331.1\|WP_000197271.1\|857733_858276_+\|5'-3'-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
NC_017331.1\|WP_000930014.1\|861988_862489_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
NC_017331.1\|WP_000180991.1\|854570_856085_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NC_017331.1\|WP_000193751.1\|860142_861648_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NC_017331.1\|WP_000562498.1\|866759_867731_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NC_017331.1\|WP_001068497.1\|862508_863375_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_017331.1\|WP_000525109.1\|849702_851586_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000098285.1\|847491_849432_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
NC_017331.1\|WP_000855505.1\|864536_866642_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NC_017331.1\|WP_000589260.1\|853600_854578_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
NC_017331.1\|WP_000876318.1\|868438_869410_+\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.32603e-150
NC_017331.1\|WP_000429014.1\|858955_859873_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78
NC_017331.1\|WP_000692521.1\|864175_864574_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
NC_017331.1\|WP_000983677.1\|851597_853379_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_017331.1\|WP_000663030.1\|856324_857383_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NC_017331.1\|WP_000708692.1\|845319_846030_+\|allophanate-hydrolase-subunit-1	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
NC_017331.1\|WP_000022323.1\|846013_847018_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
NC_017331.1\|WP_000197271.1\|857733_858276_+\|5'-3'-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107
NC_017331.1\|WP_000930014.1\|861988_862489_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
NC_017331.1\|WP_000180991.1\|854570_856085_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
NC_017331.1\|WP_000193751.1\|860142_861648_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
NC_017331.1\|WP_000562498.1\|866759_867731_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
NC_017331.1\|WP_001068497.1\|862508_863375_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
NC_017331.1\|WP_000525109.1\|849702_851586_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0

>NC_017331.1|WP_000197271.1|857733_858276_+|5'-3'-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>NC_017331.1|WP_000663030.1|856324_857383_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>NC_017331.1|WP_000180991.1|854570_856085_+|ABC-transporter-permease/substrate-binding-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>NC_017331.1|WP_000589260.1|853600_854578_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>NC_017331.1|WP_000983677.1|851597_853379_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>NC_017331.1|WP_000525109.1|849702_851586_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MGMEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREENEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>NC_017331.1|WP_000098285.1|847491_849432_+|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>NC_017331.1|WP_000022323.1|846013_847018_+|biotin-dependent-carboxyltransferase-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>NC_017331.1|WP_000708692.1|845319_846030_+|allophanate-hydrolase-subunit-1
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>NC_017331.1|WP_001790169.1|845025_845232_+|hypothetical-protein
MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIATITTVISFILVYALIHELMPFVVRAMDLMYHQ
>NC_017331.1|WP_000429014.1|858955_859873_-|diacylglycerol-kinase-family-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>NC_017331.1|WP_001790641.1|859963_860065_+|hypothetical-protein
MVINEIDFYRVGRENIVIAVYNEHIKFLFILIS
>NC_017331.1|WP_000193751.1|860142_861648_-|peptide-MFS-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>NC_017331.1|WP_000930014.1|861988_862489_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>NC_017331.1|WP_001068497.1|862508_863375_-|DMT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>NC_017331.1|WP_000692521.1|864175_864574_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>NC_017331.1|WP_000855505.1|864536_866642_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>NC_017331.1|WP_000562498.1|866759_867731_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>NC_017331.1|WP_000499195.1|868244_868400_+|hypothetical-protein
MFYFTLSKQNTHSEKLNFSLIANINKIDTKLFERLLKLWSKNATINEKYYQ
>NC_017331.1|WP_000876318.1|868438_869410_+|ABC-transporter-permease
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ

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Crispr_ID: NC_017331_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_4

899477-899557

Unclear

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017331_4

>merge|NC_017331|4|899477-899557|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>NC_017331|4|4|899477-899557|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000513308.1\|900731_901571_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NC_017331.1\|WP_000538141.1\|893195_893846_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NC_017331.1\|WP_000229253.1\|894347_896333_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_017331.1\|WP_000638419.1\|893842_894079_+\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NC_017331.1\|WP_000506532.1\|887817_890349_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_017331.1\|WP_001790093.1\|891927_892035_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000662681.1\|896340_899187_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_017331.1\|WP_000369732.1\|905336_906248_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
NC_017331.1\|WP_000958224.1\|899793_900726_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NC_017331.1\|WP_001049165.1\|908866_909454_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NC_017331.1\|WP_000816295.1\|909696_910599_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NC_017331.1\|WP_001224793.1\|901578_902064_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NC_017331.1\|WP_000057549.1\|902071_903511_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
NC_017331.1\|WP_010956549.1\|890663_891774_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NC_017331.1\|WP_000134963.1\|903577_904513_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_017331.1\|WP_000006551.1\|907349_908294_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NC_017331.1\|WP_001248939.1\|906244_907240_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NC_017331.1\|WP_000617735.1\|886831_887404_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NC_017331.1\|WP_001790092.1\|890390_890495_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000749380.1\|892182_893022_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000513308.1\|900731_901571_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.39921e-119
NC_017331.1\|WP_000538141.1\|893195_893846_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
NC_017331.1\|WP_000229253.1\|894347_896333_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_017331.1\|WP_000638419.1\|893842_894079_+\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NC_017331.1\|WP_000134963.1\|903577_904513_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NC_017331.1\|WP_000617735.1\|886831_887404_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
NC_017331.1\|WP_000369732.1\|905336_906248_+\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	1.09727e-168
NC_017331.1\|WP_000958224.1\|899793_900726_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NC_017331.1\|WP_001049165.1\|908866_909454_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
NC_017331.1\|WP_001224793.1\|901578_902064_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
NC_017331.1\|WP_000057549.1\|902071_903511_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.31987e-06
NC_017331.1\|WP_010956549.1\|890663_891774_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NC_017331.1\|WP_001248939.1\|906244_907240_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
NC_017331.1\|WP_000006551.1\|907349_908294_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
NC_017331.1\|WP_000816295.1\|909696_910599_-\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	4.94096e-153
NC_017331.1\|WP_000662681.1\|896340_899187_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_017331.1\|WP_000506532.1\|887817_890349_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_017331.1\|WP_000749380.1\|892182_893022_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.23913e-42

>NC_017331.1|WP_000662681.1|896340_899187_+|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>NC_017331.1|WP_000229253.1|894347_896333_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NC_017331.1|WP_000638419.1|893842_894079_+|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NC_017331.1|WP_000538141.1|893195_893846_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>NC_017331.1|WP_000749380.1|892182_893022_+|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NC_017331.1|WP_001790093.1|891927_892035_+|hypothetical-protein
MCLLKQHMQCAFSNITYGDFQGIELIIENVLNYMV
>NC_017331.1|WP_010956549.1|890663_891774_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>NC_017331.1|WP_001790092.1|890390_890495_+|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSFKKSV
>NC_017331.1|WP_000506532.1|887817_890349_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNESHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>NC_017331.1|WP_000617735.1|886831_887404_+|ribosome-associated-translation-inhibitor-RaiA
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>NC_017331.1|WP_000958224.1|899793_900726_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NC_017331.1|WP_000513308.1|900731_901571_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>NC_017331.1|WP_001224793.1|901578_902064_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NC_017331.1|WP_000057549.1|902071_903511_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLSDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NC_017331.1|WP_000134963.1|903577_904513_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>NC_017331.1|WP_000369732.1|905336_906248_+|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGVGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>NC_017331.1|WP_001248939.1|906244_907240_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>NC_017331.1|WP_000006551.1|907349_908294_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>NC_017331.1|WP_001049165.1|908866_909454_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>NC_017331.1|WP_000816295.1|909696_910599_-|TIGR01777-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE

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Crispr_ID: NC_017331_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_5

948013-948094

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017331_5

>merge|NC_017331|5|948013-948094|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>NC_017331|5|5|948013-948094|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_001065801.1\|949029_949326_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NC_017331.1\|WP_001190695.1\|945493_945814_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NC_017331.1\|WP_000255561.1\|941770_942388_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NC_017331.1\|WP_000520233.1\|950593_951289_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NC_017331.1\|WP_000142630.1\|955234_955969_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017331.1\|WP_000932217.1\|947030_947909_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
NC_017331.1\|WP_000733773.1\|953579_954308_-\|staphylococcal-enterotoxin-type-K	unknown	unknown	gnl\|CDD\|280949
NC_017331.1\|WP_000290485.1\|946471_946852_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_017331.1\|WP_000589549.1\|945957_946314_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NC_017331.1\|WP_001140686.1\|941116_941698_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_017331.1\|WP_000422909.1\|944804_945344_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NC_017331.1\|WP_000264182.1\|952271_953492_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_017331.1\|WP_001063624.1\|956118_956331_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_017331.1\|WP_001018962.1\|948650_949037_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
NC_017331.1\|WP_000569884.1\|942542_943037_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
NC_017331.1\|WP_000974460.1\|943435_943858_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NC_017331.1\|WP_001033317.1\|954331_955060_-\|staphylococcal-enterotoxin-type-Q	unknown	unknown	gnl\|CDD\|280949
NC_017331.1\|WP_000150017.1\|944005_944722_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
NC_017331.1\|WP_000571218.1\|949575_950601_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NC_017331.1\|WP_000732326.1\|951306_952128_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_001065801.1\|949029_949326_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
NC_017331.1\|WP_001190695.1\|945493_945814_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
NC_017331.1\|WP_000255561.1\|941770_942388_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	9.12336e-62
NC_017331.1\|WP_000520233.1\|950593_951289_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
NC_017331.1\|WP_000142630.1\|955234_955969_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.1934e-12
NC_017331.1\|WP_000932217.1\|947030_947909_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.24542e-75
NC_017331.1\|WP_000733773.1\|953579_954308_-\|staphylococcal-enterotoxin-type-K	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	3.87599e-25
NC_017331.1\|WP_000290485.1\|946471_946852_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.81086e-68
NC_017331.1\|WP_000589549.1\|945957_946314_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
NC_017331.1\|WP_001140686.1\|941116_941698_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.48911e-47
NC_017331.1\|WP_000422909.1\|944804_945344_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.47647e-49
NC_017331.1\|WP_000264182.1\|952271_953492_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.81902e-37
NC_017331.1\|WP_001063624.1\|956118_956331_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	7.52525e-13
NC_017331.1\|WP_001018962.1\|948650_949037_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
NC_017331.1\|WP_000569884.1\|942542_943037_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
NC_017331.1\|WP_000974460.1\|943435_943858_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
NC_017331.1\|WP_001033317.1\|954331_955060_-\|staphylococcal-enterotoxin-type-Q	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	7.79999e-28
NC_017331.1\|WP_000150017.1\|944005_944722_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	1.26721e-148
NC_017331.1\|WP_000571218.1\|949575_950601_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
NC_017331.1\|WP_000732326.1\|951306_952128_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112

>NC_017331.1|WP_000932217.1|947030_947909_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNENIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>NC_017331.1|WP_000290485.1|946471_946852_+|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE
>NC_017331.1|WP_000589549.1|945957_946314_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>NC_017331.1|WP_001190695.1|945493_945814_-|thioredoxin-family-protein
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>NC_017331.1|WP_000422909.1|944804_945344_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEGDMPKAPRKNRNLITLY
>NC_017331.1|WP_000150017.1|944005_944722_+|type-I-3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
>NC_017331.1|WP_000974460.1|943435_943858_-|organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>NC_017331.1|WP_000569884.1|942542_943037_-|GNAT-family-N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>NC_017331.1|WP_000255561.1|941770_942388_-|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>NC_017331.1|WP_001140686.1|941116_941698_+|histidine-phosphatase-family-protein
MAKTLYIMRHGQTLFNFKGLIQGFGDSPLTELGIAQAQKARSYYETKGINFDLYASSTQERASDTLENVAPNQSYQRFKGLKEWHFGIFEGESVYLFDNLYKPEDLFGDRIVPFKGEARQQVEERIVKTLHDIMSQTKNNALVVSHGTIMGVFLRYCLKLDEALKHNIGNCNILKFEYDNGTFKFVELIDPNL
>NC_017331.1|WP_001018962.1|948650_949037_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>NC_017331.1|WP_001065801.1|949029_949326_+|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>NC_017331.1|WP_000571218.1|949575_950601_+|methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>NC_017331.1|WP_000520233.1|950593_951289_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>NC_017331.1|WP_000732326.1|951306_952128_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>NC_017331.1|WP_000264182.1|952271_953492_-|site-specific-integrase
MWFEKFKNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
>NC_017331.1|WP_000733773.1|953579_954308_-|staphylococcal-enterotoxin-type-K
MKKLISILLINIIILGVSNNASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKLVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
>NC_017331.1|WP_001033317.1|954331_955060_-|staphylococcal-enterotoxin-type-Q
MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEKTE
>NC_017331.1|WP_000142630.1|955234_955969_-|helix-turn-helix-transcriptional-regulator
MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNLLIGFKTHIEYKMGSESPFYEINNSYLDEILIMFINSSNSTISDRDPNELITQFNEYYDVTIKKKQNENSKIESDIFSNKIKLVKGTTKKEVIEKPYFDLNWLLTQNEYEVFFDRSFLLDNNFLNKKHFTEKDMYYYNVLNDNDLKTIKDLIVVFLLNKYNYIKNKDDFFNIFTNSEDDKTKRDALYKILYETD
>NC_017331.1|WP_001063624.1|956118_956331_+|helix-turn-helix-transcriptional-regulator
MNNNLSLLMGKHRVTASKLSTVTGISRTSIHGLYHERTENPDTKTVMKLCEYFNITPNEFFGIIEKEGVK

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Crispr_ID: NC_017331_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_6

1145048-1145135

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017331_6

>merge|NC_017331|6|1145048-1145135|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>NC_017331|6|6|1145048-1145135|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000030812.1\|1137147_1138176_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NC_017331.1\|WP_000483713.1\|1135670_1137155_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
NC_017331.1\|WP_001289614.1\|1151296_1151530_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|239274
NC_017331.1\|WP_000273253.1\|1141771_1142578_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NC_017331.1\|WP_000032727.1\|1133502_1135692_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NC_017331.1\|WP_000064214.1\|1145144_1145279_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000381849.1\|1151727_1153089_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NC_017331.1\|WP_000921968.1\|1142570_1143971_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NC_017331.1\|WP_000638456.1\|1153085_1154105_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NC_017331.1\|WP_000437472.1\|1149072_1149339_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NC_017331.1\|WP_000505965.1\|1148376_1148919_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368297
NC_017331.1\|WP_000709290.1\|1138759_1140238_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_017331.1\|WP_001101908.1\|1140259_1141507_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
NC_017331.1\|WP_000238664.1\|1138178_1138745_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
NC_017331.1\|WP_000009069.1\|1145430_1146726_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000685079.1\|1147150_1148323_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NC_017331.1\|WP_000040054.1\|1149341_1151060_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_017331.1\|WP_000033477.1\|1143985_1144561_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|227065
NC_017331.1\|WP_000666799.1\|1132838_1133510_+\|phosphoribosylformylglycinamidine-synthase-I	unknown	unknown	gnl\|CDD\|235140
NC_017331.1\|WP_000514290.1\|1154237_1154900_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000030812.1\|1137147_1138176_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_017331.1\|WP_000483713.1\|1135670_1137155_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
NC_017331.1\|WP_001289614.1\|1151296_1151530_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	5.00495e-16
NC_017331.1\|WP_000273253.1\|1141771_1142578_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.39205e-29
NC_017331.1\|WP_000032727.1\|1133502_1135692_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_017331.1\|WP_000505965.1\|1148376_1148919_+\|hypothetical-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00779365
NC_017331.1\|WP_000381849.1\|1151727_1153089_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.48829e-165
NC_017331.1\|WP_000921968.1\|1142570_1143971_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.67975e-64
NC_017331.1\|WP_000638456.1\|1153085_1154105_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	6.42118e-76
NC_017331.1\|WP_000437472.1\|1149072_1149339_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
NC_017331.1\|WP_000709290.1\|1138759_1140238_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_017331.1\|WP_001101908.1\|1140259_1141507_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
NC_017331.1\|WP_000238664.1\|1138178_1138745_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	7.23817e-92
NC_017331.1\|WP_000685079.1\|1147150_1148323_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	5.6543e-145
NC_017331.1\|WP_000040054.1\|1149341_1151060_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_017331.1\|WP_000033477.1\|1143985_1144561_-\|ECF-transporter-S-component	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
NC_017331.1\|WP_000666799.1\|1132838_1133510_+\|phosphoribosylformylglycinamidine-synthase-I	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.77638e-140
NC_017331.1\|WP_000514290.1\|1154237_1154900_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.35421e-66

>NC_017331.1|WP_000033477.1|1143985_1144561_-|ECF-transporter-S-component
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>NC_017331.1|WP_000921968.1|1142570_1143971_-|ABC-transporter-ATP-binding-protein
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>NC_017331.1|WP_000273253.1|1141771_1142578_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDIIFIIVLIAIITMAYYCSITLPITGIDDVRLGRVG
>NC_017331.1|WP_001101908.1|1140259_1141507_+|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQAILDFAKRQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYKKVSQIQSDHLFYRHDIANKALQLK
>NC_017331.1|WP_000709290.1|1138759_1140238_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPATVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>NC_017331.1|WP_000238664.1|1138178_1138745_+|phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRKCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>NC_017331.1|WP_000030812.1|1137147_1138176_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>NC_017331.1|WP_000483713.1|1135670_1137155_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>NC_017331.1|WP_000032727.1|1133502_1135692_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGDHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>NC_017331.1|WP_000666799.1|1132838_1133510_+|phosphoribosylformylglycinamidine-synthase-I
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>NC_017331.1|WP_000064214.1|1145144_1145279_-|hypothetical-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>NC_017331.1|WP_000009069.1|1145430_1146726_+|hypothetical-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>NC_017331.1|WP_000685079.1|1147150_1148323_+|class-I-SAM-dependent-rRNA-methyltransferase
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQQINTAFFVKLFNTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSAIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>NC_017331.1|WP_000505965.1|1148376_1148919_+|hypothetical-protein
MGFKNNLTSNLTNKIGNSVFKIENVDGKGAMPTTIQELRERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERIMSAAAIQGSQFIGKRISNAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>NC_017331.1|WP_000437472.1|1149072_1149339_+|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>NC_017331.1|WP_000040054.1|1149341_1151060_+|phosphoenolpyruvate--protein-phosphotransferase
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>NC_017331.1|WP_001289614.1|1151296_1151530_-|glutaredoxin-like-protein-NrdH
MSEIIVYTQNDCPPCTFVKNYLNEHHIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>NC_017331.1|WP_000381849.1|1151727_1153089_+|cytochrome-ubiquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>NC_017331.1|WP_000638456.1|1153085_1154105_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFGISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
>NC_017331.1|WP_000514290.1|1154237_1154900_+|TrkA-family-potassium-uptake-protein
MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR

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Crispr_ID: NC_017331_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_7

1225387-1225688

Orphan

Consensus_repeat	Method
TGCAAGTTGGNGNGGNNCCNA	CRT

5 spacers

The CRISPR arrays of NC_017331_7

>merge|NC_017331|7|1225387-1225688|CRT
TGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCAAGTTGGGGTAGGACATC

>NC_017331|7|1|1225387-1225688|CRT
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTTCAACAGACAA
TGCAAGTTGGGGTGGGGCCCA	ACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTCCAACAAACAA
TGCAAGTTGGCGGGGCCCCAA	TATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA
TGCAAGTTGGGGTAGGACATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000584398.1\|1223256_1223763_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000669537.1\|1224672_1225023_+\|complement-inhibitor-SCIN-B	unknown	unknown	gnl\|CDD\|371594
NC_017331.1\|WP_000791587.1\|1224021_1224519_+\|complement-convertase-inhibitor-Efb	unknown	unknown	gnl\|CDD\|289007
NC_017331.1\|WP_001803346.1\|1221124_1221292_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_001039659.1\|1219101_1219902_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NC_017331.1\|WP_000041896.1\|1231152_1231869_-\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NC_017331.1\|WP_001074342.1\|1234983_1235916_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NC_017331.1\|WP_001791789.1\|1222131_1222224_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000659317.1\|1219913_1220501_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|184835
NC_017331.1\|WP_001063557.1\|1231976_1232702_-\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NC_017331.1\|WP_000765708.1\|1230324_1230471_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000739523.1\|1232796_1233522_-\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NC_017331.1\|WP_000739563.1\|1222183_1222585_-\|formyl-peptide-receptor-like-1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
NC_017331.1\|WP_000049484.1\|1220493_1220997_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223695
NC_017331.1\|WP_001032814.1\|1225843_1226029_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000848124.1\|1227360_1228320_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
NC_017331.1\|WP_000231632.1\|1226650_1226884_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000739209.1\|1221485_1221815_+\|complement-convertase-inhibitor-Ecb	unknown	unknown	gnl\|CDD\|289007
NC_017331.1\|WP_000195429.1\|1228584_1229757_+\|IS256-like-element-IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017331.1\|WP_000793606.1\|1233959_1234961_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000669537.1\|1224672_1225023_+\|complement-inhibitor-SCIN-B	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
NC_017331.1\|WP_000791587.1\|1224021_1224519_+\|complement-convertase-inhibitor-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.40265e-27
NC_017331.1\|WP_000793606.1\|1233959_1234961_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
NC_017331.1\|WP_001039659.1\|1219101_1219902_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.38427e-134
NC_017331.1\|WP_000041896.1\|1231152_1231869_-\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152
NC_017331.1\|WP_000195429.1\|1228584_1229757_+\|IS256-like-element-IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	0
NC_017331.1\|WP_000659317.1\|1219913_1220501_+\|XTP/dITP-diphosphatase	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	1.88157e-114
NC_017331.1\|WP_001063557.1\|1231976_1232702_-\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	4.11802e-148
NC_017331.1\|WP_000739523.1\|1232796_1233522_-\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
NC_017331.1\|WP_000739563.1\|1222183_1222585_-\|formyl-peptide-receptor-like-1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	3.87075e-77
NC_017331.1\|WP_000049484.1\|1220493_1220997_+\|metallophosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	9.91823e-44
NC_017331.1\|WP_000848124.1\|1227360_1228320_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.62736e-140
NC_017331.1\|WP_000739209.1\|1221485_1221815_+\|complement-convertase-inhibitor-Ecb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	4.63429e-22
NC_017331.1\|WP_001074342.1\|1234983_1235916_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0

>NC_017331.1|WP_000669537.1|1224672_1225023_+|complement-inhibitor-SCIN-B
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>NC_017331.1|WP_000791587.1|1224021_1224519_+|complement-convertase-inhibitor-Efb
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>NC_017331.1|WP_000584398.1|1223256_1223763_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NC_017331.1|WP_000739563.1|1222183_1222585_-|formyl-peptide-receptor-like-1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSITWY
>NC_017331.1|WP_001791789.1|1222131_1222224_-|hypothetical-protein
MLKTVKSTRLLGIKKHTELNSCTPNVRKQC
>NC_017331.1|WP_000739209.1|1221485_1221815_+|complement-convertase-inhibitor-Ecb
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNFFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>NC_017331.1|WP_001803346.1|1221124_1221292_+|hypothetical-protein
MKRIVILENVIVDNPIWLNHVDYLVKSVLLKSIKLRFQEVKKFEILVKIMNRIHI
>NC_017331.1|WP_000049484.1|1220493_1220997_+|metallophosphoesterase
MSKWIIVSDNHTESGVLYQIYEMHPDADVYLHLGDSEFAYDDTELSLFNRVKGNCDFYPEFENEAVAKYNDVKAFYTHGHLYQVNRTRDLLAEKGLELGCLFAFYGHTHVAKYEYINGVHVINPGSISQSRSSMEETYAEVIIDDQTLHGTINFKNRHHETISHTTF
>NC_017331.1|WP_000659317.1|1219913_1220501_+|XTP/dITP-diphosphatase
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGDKNV
>NC_017331.1|WP_001039659.1|1219101_1219902_+|glutamate-racemase
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
>NC_017331.1|WP_001032814.1|1225843_1226029_-|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NC_017331.1|WP_000231632.1|1226650_1226884_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>NC_017331.1|WP_000848124.1|1227360_1228320_-|alpha-hemolysin
MKTHIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN
>NC_017331.1|WP_000195429.1|1228584_1229757_+|IS256-like-element-IS256-family-transposase
MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
>NC_017331.1|WP_000765708.1|1230324_1230471_+|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NC_017331.1|WP_000041896.1|1231152_1231869_-|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NC_017331.1|WP_001063557.1|1231976_1232702_-|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAHYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NC_017331.1|WP_000739523.1|1232796_1233522_-|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>NC_017331.1|WP_000793606.1|1233959_1234961_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVLESKASVVFQEAENRMHTIKAVMVATLGEF
>NC_017331.1|WP_001074342.1|1234983_1235916_+|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK

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Crispr_ID: NC_017331_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_8

1230892-1230977

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017331_8

>merge|NC_017331|8|1230892-1230977|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>NC_017331|8|7|1230892-1230977|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000584398.1\|1223256_1223763_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000669537.1\|1224672_1225023_+\|complement-inhibitor-SCIN-B	unknown	unknown	gnl\|CDD\|371594
NC_017331.1\|WP_000791587.1\|1224021_1224519_+\|complement-convertase-inhibitor-Efb	unknown	unknown	gnl\|CDD\|289007
NC_017331.1\|WP_000793606.1\|1233959_1234961_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
NC_017331.1\|WP_001074342.1\|1234983_1235916_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NC_017331.1\|WP_000041896.1\|1231152_1231869_-\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NC_017331.1\|WP_001791789.1\|1222131_1222224_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000398672.1\|1240779_1240914_+\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NC_017331.1\|WP_001245802.1\|1239679_1239868_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
NC_017331.1\|WP_001063557.1\|1231976_1232702_-\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NC_017331.1\|WP_000765708.1\|1230324_1230471_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000739523.1\|1232796_1233522_-\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NC_017331.1\|WP_000432077.1\|1236087_1237644_+\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NC_017331.1\|WP_000739563.1\|1222183_1222585_-\|formyl-peptide-receptor-like-1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
NC_017331.1\|WP_001032814.1\|1225843_1226029_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000848124.1\|1227360_1228320_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
NC_017331.1\|WP_000231632.1\|1226650_1226884_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000195429.1\|1228584_1229757_+\|IS256-like-element-IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017331.1\|WP_000149423.1\|1237951_1238179_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_001239288.1\|1238483_1239431_-\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000669537.1\|1224672_1225023_+\|complement-inhibitor-SCIN-B	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
NC_017331.1\|WP_000791587.1\|1224021_1224519_+\|complement-convertase-inhibitor-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.40265e-27
NC_017331.1\|WP_000793606.1\|1233959_1234961_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
NC_017331.1\|WP_001074342.1\|1234983_1235916_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
NC_017331.1\|WP_000041896.1\|1231152_1231869_-\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152
NC_017331.1\|WP_000195429.1\|1228584_1229757_+\|IS256-like-element-IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	0
NC_017331.1\|WP_000398672.1\|1240779_1240914_+\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
NC_017331.1\|WP_001063557.1\|1231976_1232702_-\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	4.11802e-148
NC_017331.1\|WP_000739523.1\|1232796_1233522_-\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
NC_017331.1\|WP_001239288.1\|1238483_1239431_-\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	1.39126e-83
NC_017331.1\|WP_000739563.1\|1222183_1222585_-\|formyl-peptide-receptor-like-1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	3.87075e-77
NC_017331.1\|WP_001245802.1\|1239679_1239868_+\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
NC_017331.1\|WP_000848124.1\|1227360_1228320_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.62736e-140
NC_017331.1\|WP_000432077.1\|1236087_1237644_+\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0

>NC_017331.1|WP_000765708.1|1230324_1230471_+|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NC_017331.1|WP_000195429.1|1228584_1229757_+|IS256-like-element-IS256-family-transposase
MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
>NC_017331.1|WP_000848124.1|1227360_1228320_-|alpha-hemolysin
MKTHIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN
>NC_017331.1|WP_000231632.1|1226650_1226884_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>NC_017331.1|WP_001032814.1|1225843_1226029_-|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NC_017331.1|WP_000669537.1|1224672_1225023_+|complement-inhibitor-SCIN-B
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>NC_017331.1|WP_000791587.1|1224021_1224519_+|complement-convertase-inhibitor-Efb
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>NC_017331.1|WP_000584398.1|1223256_1223763_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NC_017331.1|WP_000739563.1|1222183_1222585_-|formyl-peptide-receptor-like-1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSITWY
>NC_017331.1|WP_001791789.1|1222131_1222224_-|hypothetical-protein
MLKTVKSTRLLGIKKHTELNSCTPNVRKQC
>NC_017331.1|WP_000041896.1|1231152_1231869_-|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NC_017331.1|WP_001063557.1|1231976_1232702_-|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAHYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NC_017331.1|WP_000739523.1|1232796_1233522_-|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>NC_017331.1|WP_000793606.1|1233959_1234961_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVLESKASVVFQEAENRMHTIKAVMVATLGEF
>NC_017331.1|WP_001074342.1|1234983_1235916_+|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>NC_017331.1|WP_000432077.1|1236087_1237644_+|YfcC-family-protein
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>NC_017331.1|WP_000149423.1|1237951_1238179_+|hypothetical-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>NC_017331.1|WP_001239288.1|1238483_1239431_-|TDT-family-transporter
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLKNVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>NC_017331.1|WP_001245802.1|1239679_1239868_+|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>NC_017331.1|WP_000398672.1|1240779_1240914_+|beta-class-phenol-soluble-modulin
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF

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Crispr_ID: NC_017331_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_9

2417333-2417483

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of NC_017331_9

>merge|NC_017331|9|2417333-2417483|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>NC_017331|9|8|2417333-2417483|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000370924.1\|2420827_2421685_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NC_017331.1\|WP_000070866.1\|2408645_2409089_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_017331.1\|WP_000495671.1\|2416223_2417315_+\|lytic-regulatory-protein	unknown	unknown	unknown
NC_017331.1\|WP_000808817.1\|2412204_2412435_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000334467.1\|2422766_2424572_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NC_017331.1\|WP_001292149.1\|2428969_2429404_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NC_017331.1\|WP_001123303.1\|2409288_2409702_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NC_017331.1\|WP_000115564.1\|2418605_2419742_-\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887
NC_017331.1\|WP_001127960.1\|2412465_2413404_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NC_017331.1\|WP_000648718.1\|2429403_2430510_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NC_017331.1\|WP_000123393.1\|2410159_2411533_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NC_017331.1\|WP_000083789.1\|2425252_2426791_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NC_017331.1\|WP_000019744.1\|2414977_2415958_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NC_017331.1\|WP_000003759.1\|2414655_2414976_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_017331.1\|WP_001790138.1\|2420030_2420123_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000160304.1\|2407814_2408525_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NC_017331.1\|WP_000927363.1\|2426825_2428958_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NC_017331.1\|WP_001802298.1\|2417814_2417919_-\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_001024094.1\|2413838_2414504_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NC_017331.1\|WP_000908176.1\|2421752_2422535_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000370924.1\|2420827_2421685_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.39747e-59
NC_017331.1\|WP_000070866.1\|2408645_2409089_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NC_017331.1\|WP_000115564.1\|2418605_2419742_-\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	3.91533e-06
NC_017331.1\|WP_000334467.1\|2422766_2424572_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NC_017331.1\|WP_001292149.1\|2428969_2429404_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NC_017331.1\|WP_001123303.1\|2409288_2409702_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
NC_017331.1\|WP_001127960.1\|2412465_2413404_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NC_017331.1\|WP_000648718.1\|2429403_2430510_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NC_017331.1\|WP_000123393.1\|2410159_2411533_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NC_017331.1\|WP_000083789.1\|2425252_2426791_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NC_017331.1\|WP_000019744.1\|2414977_2415958_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
NC_017331.1\|WP_000003759.1\|2414655_2414976_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NC_017331.1\|WP_000908176.1\|2421752_2422535_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	4.88024e-103
NC_017331.1\|WP_000160304.1\|2407814_2408525_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NC_017331.1\|WP_000927363.1\|2426825_2428958_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.09729e-67
NC_017331.1\|WP_001024094.1\|2413838_2414504_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.74381e-48

>NC_017331.1|WP_000495671.1|2416223_2417315_+|lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NC_017331.1|WP_000019744.1|2414977_2415958_+|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>NC_017331.1|WP_000003759.1|2414655_2414976_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NC_017331.1|WP_001024094.1|2413838_2414504_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>NC_017331.1|WP_001127960.1|2412465_2413404_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NC_017331.1|WP_000808817.1|2412204_2412435_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NC_017331.1|WP_000123393.1|2410159_2411533_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NC_017331.1|WP_001123303.1|2409288_2409702_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NC_017331.1|WP_000070866.1|2408645_2409089_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NC_017331.1|WP_000160304.1|2407814_2408525_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NC_017331.1|WP_001802298.1|2417814_2417919_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NC_017331.1|WP_000115564.1|2418605_2419742_-|SAP-domain-containing-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
>NC_017331.1|WP_001790138.1|2420030_2420123_+|hypothetical-protein
MFIFKTTSKSHFHNNVKSLECIKIPINKNR
>NC_017331.1|WP_000370924.1|2420827_2421685_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAEHFLAE
>NC_017331.1|WP_000908176.1|2421752_2422535_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMFAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NC_017331.1|WP_000334467.1|2422766_2424572_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDTPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NC_017331.1|WP_000083789.1|2425252_2426791_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRFQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NC_017331.1|WP_000927363.1|2426825_2428958_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NC_017331.1|WP_001292149.1|2428969_2429404_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NC_017331.1|WP_000648718.1|2429403_2430510_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVEDSSIEAGLRRVLAETSQYITNEFDFTEAEQAAYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS

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Crispr_ID: NC_017331_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017331_10

2541496-2541689

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of NC_017331_10

>merge|NC_017331|10|2541496-2541689|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>NC_017331|10|2|2541496-2541689|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017331.1\|WP_000866971.1\|2543478_2543712_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|340452
NC_017331.1\|WP_000184419.1\|2539476_2540688_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NC_017331.1\|WP_001790034.1\|2541265_2541436_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000503817.1\|2546477_2546984_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|223595
NC_017331.1\|WP_000643988.1\|2542872_2543472_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NC_017331.1\|WP_000413865.1\|2536220_2537486_-\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
NC_017331.1\|WP_000259718.1\|2544659_2545919_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NC_017331.1\|WP_000230173.1\|2541830_2542853_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|274250
NC_017331.1\|WP_000051206.1\|2532023_2532188_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000600967.1\|2538117_2538882_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NC_017331.1\|WP_001549681.1\|2537874_2538126_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000951058.1\|2539043_2539484_+\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NC_017331.1\|WP_000066900.1\|2540789_2541140_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
NC_017331.1\|WP_000602937.1\|2544177_2544663_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
NC_017331.1\|WP_000076929.1\|2547014_2548019_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|181084
NC_017331.1\|WP_001161085.1\|2532432_2532750_+\|hypothetical-protein	unknown	unknown	unknown
NC_017331.1\|WP_000913019.1\|2548188_2548794_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226628
NC_017331.1\|WP_000592303.1\|2532936_2536104_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_017331.1\|WP_000134528.1\|2545981_2546476_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_017331.1\|WP_000808500.1\|2543717_2544164_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391

Protein	Function_ID	Function_description	E-value
NC_017331.1\|WP_000866971.1\|2543478_2543712_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
NC_017331.1\|WP_000184419.1\|2539476_2540688_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27961e-72
NC_017331.1\|WP_000602937.1\|2544177_2544663_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	4.35501e-50
NC_017331.1\|WP_000643988.1\|2542872_2543472_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
NC_017331.1\|WP_000413865.1\|2536220_2537486_-\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	4.8324e-143
NC_017331.1\|WP_000259718.1\|2544659_2545919_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	9.49423e-160
NC_017331.1\|WP_000230173.1\|2541830_2542853_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
NC_017331.1\|WP_000600967.1\|2538117_2538882_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
NC_017331.1\|WP_000951058.1\|2539043_2539484_+\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
NC_017331.1\|WP_000066900.1\|2540789_2541140_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
NC_017331.1\|WP_000076929.1\|2547014_2548019_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	3.67241e-132
NC_017331.1\|WP_000503817.1\|2546477_2546984_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	1.02752e-64
NC_017331.1\|WP_000913019.1\|2548188_2548794_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.32197e-115
NC_017331.1\|WP_000592303.1\|2532936_2536104_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_017331.1\|WP_000134528.1\|2545981_2546476_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	3.63862e-98
NC_017331.1\|WP_000808500.1\|2543717_2544164_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58

>NC_017331.1|WP_001790034.1|2541265_2541436_+|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNGMECDINVKEPLKIYYVVILKSGIEMIFS
>NC_017331.1|WP_000066900.1|2540789_2541140_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>NC_017331.1|WP_000184419.1|2539476_2540688_+|MFS-transporter
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>NC_017331.1|WP_000951058.1|2539043_2539484_+|winged-helix-DNA-binding-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>NC_017331.1|WP_000600967.1|2538117_2538882_-|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>NC_017331.1|WP_001549681.1|2537874_2538126_+|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY
>NC_017331.1|WP_000413865.1|2536220_2537486_-|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMKTSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>NC_017331.1|WP_000592303.1|2532936_2536104_-|efflux-RND-transporter-permease-subunit
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>NC_017331.1|WP_001161085.1|2532432_2532750_+|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>NC_017331.1|WP_000051206.1|2532023_2532188_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDIEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>NC_017331.1|WP_000230173.1|2541830_2542853_-|GTP-3',8-cyclase-MoaA
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>NC_017331.1|WP_000643988.1|2542872_2543472_-|molybdenum-cofactor-guanylyltransferase-MobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>NC_017331.1|WP_000866971.1|2543478_2543712_-|molybdopterin-converting-factor-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>NC_017331.1|WP_000808500.1|2543717_2544164_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>NC_017331.1|WP_000602937.1|2544177_2544663_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>NC_017331.1|WP_000259718.1|2544659_2545919_-|molybdopterin-molybdotransferase-MoeA
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFVDGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>NC_017331.1|WP_000134528.1|2545981_2546476_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTLIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSNQ
>NC_017331.1|WP_000503817.1|2546477_2546984_-|molybdenum-cofactor-biosynthesis-protein-MoaB
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIDGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>NC_017331.1|WP_000076929.1|2547014_2548019_-|ThiF-family-adenylyltransferase
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKYRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>NC_017331.1|WP_000913019.1|2548188_2548794_-|ATP-binding-cassette-domain-containing-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017331_5	5.1\|948037\|34\|NC_017331\|CRISPRCasFinder	948037-948070	34	NC_017331.1	1440381-1440414	0	1.0
NC_017331_5	5.1\|948037\|34\|NC_017331\|CRISPRCasFinder	948037-948070	34	NC_017331.1	1529567-1529600	0	1.0
NC_017331_10	10.2\|2541575\|36\|NC_017331\|CRT	2541575-2541610	36	NC_017331.1	1230823-1230858	0	1.0
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	440430-440458	1	0.966
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	1895250-1895278	1	0.966
NC_017331_7	7.1\|1225408\|35\|NC_017331\|CRT	1225408-1225442	35	NC_017331.1	1225352-1225386	1	0.971
NC_017331_7	7.3\|1225521\|35\|NC_017331\|CRT	1225521-1225555	35	NC_017331.1	1225352-1225386	1	0.971
NC_017331_7	7.5\|1225633\|35\|NC_017331\|CRT	1225633-1225667	35	NC_017331.1	2170390-2170424	1	0.971
NC_017331_8	8.1\|1230922\|26\|NC_017331\|CRISPRCasFinder	1230922-1230947	26	NC_017331.1	318689-318714	1	0.962
NC_017331_8	8.1\|1230922\|26\|NC_017331\|CRISPRCasFinder	1230922-1230947	26	NC_017331.1	867953-867978	1	0.962
NC_017331_8	8.1\|1230922\|26\|NC_017331\|CRISPRCasFinder	1230922-1230947	26	NC_017331.1	904905-904930	1	0.962
NC_017331_10	10.2\|2541575\|36\|NC_017331\|CRT	2541575-2541610	36	NC_017331.1	1895243-1895278	1	0.972
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	318821-318849	2	0.931
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	948079-948107	2	0.931
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	1031044-1031072	2	0.931
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	1230830-1230858	2	0.931
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	1708672-1708700	2	0.931
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	2064179-2064207	2	0.931
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	NC_017331.1	2733101-2733129	2	0.931
NC_017331_7	7.5\|1225633\|35\|NC_017331\|CRT	1225633-1225667	35	NC_017331.1	858407-858441	2	0.943
NC_017331_7	7.5\|1225633\|35\|NC_017331\|CRT	1225633-1225667	35	NC_017331.1	904941-904975	2	0.943
NC_017331_7	7.5\|1225633\|35\|NC_017331\|CRT	1225633-1225667	35	NC_017331.1	2847836-2847870	2	0.943
NC_017331_8	8.1\|1230922\|26\|NC_017331\|CRISPRCasFinder	1230922-1230947	26	NC_017331.1	867897-867922	2	0.923
NC_017331_8	8.1\|1230922\|26\|NC_017331\|CRISPRCasFinder	1230922-1230947	26	NC_017331.1	868009-868034	2	0.923
NC_017331_10	10.1\|2541519\|33\|NC_017331\|CRT	2541519-2541551	33	NC_017331.1	1128768-1128800	2	0.939
NC_017331_10	10.1\|2541519\|33\|NC_017331\|CRT	2541519-2541551	33	NC_017331.1	1230879-1230911	2	0.939
NC_017331_10	10.1\|2541519\|33\|NC_017331\|CRT	2541519-2541551	33	NC_017331.1	1440336-1440368	2	0.939
NC_017331_10	10.1\|2541519\|33\|NC_017331\|CRT	2541519-2541551	33	NC_017331.1	1529613-1529645	2	0.939
NC_017331_10	10.1\|2541519\|33\|NC_017331\|CRT	2541519-2541551	33	NC_017331.1	2053435-2053467	2	0.939
NC_017331_10	10.1\|2541519\|33\|NC_017331\|CRT	2541519-2541551	33	NC_017331.1	2813571-2813603	2	0.939
NC_017331_10	10.2\|2541575\|36\|NC_017331\|CRT	2541575-2541610	36	NC_017331.1	318814-318849	2	0.944
NC_017331_10	10.2\|2541575\|36\|NC_017331\|CRT	2541575-2541610	36	NC_017331.1	1708672-1708707	2	0.944
NC_017331_10	10.2\|2541575\|36\|NC_017331\|CRT	2541575-2541610	36	NC_017331.1	2064179-2064214	2	0.944
NC_017331_10	10.3\|2541634\|33\|NC_017331\|CRT	2541634-2541666	33	NC_017331.1	904885-904917	2	0.939
NC_017331_10	10.3\|2541634\|33\|NC_017331\|CRT	2541634-2541666	33	NC_017331.1	1128768-1128800	2	0.939
NC_017331_10	10.3\|2541634\|33\|NC_017331\|CRT	2541634-2541666	33	NC_017331.1	1230879-1230911	2	0.939
NC_017331_10	10.3\|2541634\|33\|NC_017331\|CRT	2541634-2541666	33	NC_017331.1	1440336-1440368	2	0.939
NC_017331_10	10.3\|2541634\|33\|NC_017331\|CRT	2541634-2541666	33	NC_017331.1	2053435-2053467	2	0.939
NC_017331_10	10.3\|2541634\|33\|NC_017331\|CRT	2541634-2541666	33	NC_017331.1	2813571-2813603	2	0.939

1. spacer 5.1|948037|34|NC_017331|CRISPRCasFinder matches to position: 1440381-1440414, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 5.1|948037|34|NC_017331|CRISPRCasFinder matches to position: 1529567-1529600, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 10.2|2541575|36|NC_017331|CRT matches to position: 1230823-1230858, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 440430-440458, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

5. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 1895250-1895278, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

6. spacer 7.1|1225408|35|NC_017331|CRT matches to position: 1225352-1225386, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
************************.**********

7. spacer 7.3|1225521|35|NC_017331|CRT matches to position: 1225352-1225386, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaattccaacaaacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
******************************.****

8. spacer 7.5|1225633|35|NC_017331|CRT matches to position: 2170390-2170424, mismatch: 1, identity: 0.971

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggaacaccaatttctacagacaa	Protospacer
***************** *****************

9. spacer 8.1|1230922|26|NC_017331|CRISPRCasFinder matches to position: 318689-318714, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cgggcccccaacatagaagctggcgg	Protospacer
**** *********************

10. spacer 8.1|1230922|26|NC_017331|CRISPRCasFinder matches to position: 867953-867978, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** *****

11. spacer 8.1|1230922|26|NC_017331|CRISPRCasFinder matches to position: 904905-904930, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

12. spacer 10.2|2541575|36|NC_017331|CRT matches to position: 1895243-1895278, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

13. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 318821-318849, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

14. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 948079-948107, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

15. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 1031044-1031072, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

16. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 1230830-1230858, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

17. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 1708672-1708700, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

18. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 2064179-2064207, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

19. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to position: 2733101-2733129, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

20. spacer 7.5|1225633|35|NC_017331|CRT matches to position: 858407-858441, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

21. spacer 7.5|1225633|35|NC_017331|CRT matches to position: 904941-904975, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

22. spacer 7.5|1225633|35|NC_017331|CRT matches to position: 2847836-2847870, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

23. spacer 8.1|1230922|26|NC_017331|CRISPRCasFinder matches to position: 867897-867922, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*************.****** *****

24. spacer 8.1|1230922|26|NC_017331|CRISPRCasFinder matches to position: 868009-868034, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacataaaagcaggcgg	Protospacer
***************.**** *****

25. spacer 10.1|2541519|33|NC_017331|CRT matches to position: 1128768-1128800, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

26. spacer 10.1|2541519|33|NC_017331|CRT matches to position: 1230879-1230911, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 10.1|2541519|33|NC_017331|CRT matches to position: 1440336-1440368, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

28. spacer 10.1|2541519|33|NC_017331|CRT matches to position: 1529613-1529645, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

29. spacer 10.1|2541519|33|NC_017331|CRT matches to position: 2053435-2053467, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

30. spacer 10.1|2541519|33|NC_017331|CRT matches to position: 2813571-2813603, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

31. spacer 10.2|2541575|36|NC_017331|CRT matches to position: 318814-318849, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

32. spacer 10.2|2541575|36|NC_017331|CRT matches to position: 1708672-1708707, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

33. spacer 10.2|2541575|36|NC_017331|CRT matches to position: 2064179-2064214, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

34. spacer 10.3|2541634|33|NC_017331|CRT matches to position: 904885-904917, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgccagcttctg	Protospacer
*********************.*.*********

35. spacer 10.3|2541634|33|NC_017331|CRT matches to position: 1128768-1128800, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

36. spacer 10.3|2541634|33|NC_017331|CRT matches to position: 1230879-1230911, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

37. spacer 10.3|2541634|33|NC_017331|CRT matches to position: 1440336-1440368, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

38. spacer 10.3|2541634|33|NC_017331|CRT matches to position: 2053435-2053467, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

39. spacer 10.3|2541634|33|NC_017331|CRT matches to position: 2813571-2813603, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017331_4	4.1\|899503\|29\|NC_017331\|CRISPRCasFinder	899503-899531	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
NC_017331_7	7.1\|1225408\|35\|NC_017331\|CRT	1225408-1225442	35	KY971610	Pseudomonas phage PspYZU05, complete genome	73937-73971	11	0.686

1. spacer 4.1|899503|29|NC_017331|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

2. spacer 7.1|1225408|35|NC_017331|CRT matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 11, identity: 0.686

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
ccacatgaaatagggtcaccaatttgaacagcttt	Protospacer
* . . ********.********** ***** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12782 : 68921

Staphylococcus_phage(20.0%)

tRNA,integrase,transposase

attL 15889:15905|attR 52807:52823

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000884337.1\|12782_14069_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-88	51.2
WP_000207101.1\|14712_15408_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_000628050.1\|15404_15734_+	AzlD domain-containing protein	NA	NA	NA	NA
15889:15905	attL	NA	NA	NA	NA
WP_000186485.1\|16095_17064_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_001791031.1\|17356_18295_+	YybS family protein	NA	NA	NA	NA
WP_001081643.1\|18309_20277_+	cyclic-di-AMP phosphodiesterase GdpP	NA	NA	NA	NA
WP_000864305.1\|20273_20720_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_000375652.1\|20751_22152_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	7.1e-111	48.1
WP_000095328.1\|22429_23713_+	adenylosuccinate synthase	L7Y4J5	Megavirus	1.8e-68	34.6
WP_000101976.1\|24902_25604_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-42	39.2
WP_000871601.1\|25616_27443_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	2.1e-30	31.3
WP_001060146.1\|27435_28770_+	hypothetical protein	NA	NA	NA	NA
WP_001104171.1\|28770_29559_+	two-component system regulatory protein YycI	NA	NA	NA	NA
WP_000088649.1\|29946_30747_+	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	1.0e-37	35.9
WP_000645752.1\|30973_33292_+	LPXTG-anchored adenosine synthase AdsA	NA	NA	NA	NA
WP_000704775.1\|33659_34139_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_000677987.1\|34384_34690_+	hypothetical protein	NA	NA	NA	NA
WP_000680579.1\|34887_35751_+	hypothetical protein	G9IA57	Pseudomonas_phage	1.2e-15	27.8
WP_000449985.1\|37560_38661_+	hypothetical protein	NA	NA	NA	NA
WP_001058157.1\|38653_39025_+	hypothetical protein	NA	NA	NA	NA
WP_001015579.1\|39021_40665_+	hypothetical protein	NA	NA	NA	NA
WP_000093392.1\|42622_43108_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
WP_000175892.1\|43399_43738_+	hypothetical protein	NA	NA	NA	NA
WP_001166716.1\|43831_44143_+	hypothetical protein	NA	NA	NA	NA
WP_000848380.1\|44158_44665_+	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_000868132.1\|45121_46207_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
WP_014532403.1\|46203_48096_+\|integrase	phage integrase family protein	NA	NA	NA	NA
WP_001041907.1\|48102_48480_+	hypothetical protein	NA	NA	NA	NA
WP_000067268.1\|48630_49413_+	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA
WP_001072201.1\|49538_50270_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
WP_001092058.1\|50778_51441_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_000373151.1\|51988_52861_+	HTH domain-containing protein	NA	NA	NA	NA
52807:52823	attR	NA	NA	NA	NA
WP_000065262.1\|52917_53208_+	hypothetical protein	NA	NA	NA	NA
WP_000397419.1\|53223_53712_+	hypothetical protein	NA	NA	NA	NA
WP_000717928.1\|53846_54374_+	hypothetical protein	NA	NA	NA	NA
WP_000941331.1\|54436_54853_+	hypothetical protein	NA	NA	NA	NA
WP_001070883.1\|55319_55541_+	hypothetical protein	NA	NA	NA	NA
WP_000759939.1\|55690_56257_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_001824952.1\|56336_58565_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.8e-44	26.6
WP_001105999.1\|58611_59286_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	2.0e-127	99.1
WP_000163428.1\|59568_60915_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000425271.1\|61214_61622_+	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA
WP_000746201.1\|61638_61992_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000010352.1\|61988_62669_+	cytochrome c biosynthesis protein	NA	NA	NA	NA
WP_001794630.1\|62756_63143_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000193219.1\|63200_64844_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.7e-50	29.4
WP_000790333.1\|64925_65576_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_000377078.1\|65770_66286_-	hypothetical protein	NA	NA	NA	NA
WP_001105988.1\|66404_67079_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
WP_169301211.1\|67511_67802_-	DUF3021 family protein	NA	NA	NA	NA
WP_001803415.1\|67872_68115_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_001106055.1\|68246_68921_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	1.3e-126	98.7

DBSCAN-SWA_2

376498 : 418996

Staphylococcus_phage(87.1%)

portal,plate,tail,head,capsid,terminase,holin,integrase

attL 376388:376405|attR 419728:419745

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
376388:376405	attL	NA	NA	NA	NA
WP_000264186.1\|376498_377704_-\|integrase	site-specific integrase	Q4ZBP1	Staphylococcus_phage	8.5e-222	100.0
WP_000337826.1\|377814_377994_+	hypothetical protein	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
WP_000392181.1\|377973_378906_-	hypothetical protein	A0EX19	Staphylococcus_virus	4.1e-171	98.1
WP_000661437.1\|378937_379663_-	PH domain-containing protein	A0A0F6N4L7	Staphylococcus_phage	9.9e-125	100.0
WP_000775187.1\|379690_380365_-	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
WP_001055143.1\|380381_380714_-	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	4.1e-57	100.0
WP_000108122.1\|380977_381172_+	helix-turn-helix transcriptional regulator	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
WP_001002757.1\|381171_381939_+	phage antirepressor Ant	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
WP_000187184.1\|381939_382164_+	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
WP_001094939.1\|382203_382422_+	hypothetical protein	Q4ZBN1	Staphylococcus_phage	4.3e-31	98.6
WP_001124198.1\|382451_382715_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
WP_000066021.1\|382726_382888_+	DUF1270 family protein	Q4ZBM9	Staphylococcus_phage	3.8e-21	100.0
WP_000291089.1\|382979_383240_+	DUF1108 family protein	Q4ZBM7	Staphylococcus_phage	1.2e-43	100.0
WP_001205732.1\|383248_383512_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000700555.1\|383520_385464_+	AAA family ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
WP_000180598.1\|385465_386386_+	recombinase RecT	A0A1P8L6F6	Staphylococcus_phage	8.6e-166	99.7
WP_064135358.1\|386466_387084_+	MBL fold metallo-hydrolase	A0A1P8L6F7	Staphylococcus_phage	1.2e-86	100.0
WP_000934759.1\|387084_387555_+	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
WP_000148333.1\|387584_388478_+	DnaD domain-containing protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
WP_000338528.1\|388484_388703_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000401969.1\|388711_389116_+	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
WP_000111491.1\|389500_389758_+	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
WP_000178986.1\|389754_390003_+	hypothetical protein	A0A0K1LL46	Staphylococcus_phage	1.2e-40	97.6
WP_000695762.1\|390015_390417_+	hypothetical protein	Q4ZAC1	Staphylococcus_virus	1.1e-69	100.0
WP_000979209.1\|390413_390761_+	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
WP_000144710.1\|390757_391066_+	hypothetical protein	Q4ZD83	Staphylococcus_virus	6.2e-52	100.0
WP_001065026.1\|391058_391307_+	DUF1024 family protein	S4V7K0	Staphylococcus_phage	4.1e-38	100.0
WP_000185663.1\|391299_391836_+	dUTP diphosphatase	A0A1X9H0S5	Staphylococcus_phage	7.2e-96	99.4
WP_000195821.1\|391872_392073_+	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	2.7e-16	77.6
WP_000608279.1\|392171_392408_+	hypothetical protein	A0A0N7E0U3	Staphylococcus_phage	1.3e-36	100.0
WP_000591891.1\|392400_392574_+	transcriptional activator RinB	R4IFL3	Staphylococcus_phage	1.1e-21	98.2
WP_000989954.1\|392574_392940_+	hypothetical protein	Q4ZBJ9	Staphylococcus_phage	3.6e-59	100.0
WP_000989960.1\|392940_393087_+	hypothetical protein	Q4ZBJ8	Staphylococcus_phage	7.5e-16	100.0
WP_000162703.1\|393110_393551_+	RinA family phage transcriptional activator	Q4ZBJ7	Staphylococcus_phage	4.1e-73	100.0
WP_000594082.1\|393861_394356_+\|terminase	terminase	R4IH30	Staphylococcus_phage	1.1e-74	100.0
WP_001606760.1\|394348_395557_+\|terminase	PBSX family phage terminase large subunit	R4IG95	Staphylococcus_phage	6.1e-236	100.0
WP_001159668.1\|395510_396989_+\|portal	phage portal protein	Q4ZB45	Staphylococcus_virus	3.3e-284	99.6
WP_014532414.1\|396927_397911_+\|head	phage head morphogenesis protein	A0A0N7E0U6	Staphylococcus_phage	6.2e-170	97.4
WP_000346033.1\|397912_398119_+	hypothetical protein	A0A0N9BB04	Staphylococcus_phage	3.2e-28	100.0
WP_000366932.1\|398223_398820_+	phage scaffolding protein	R4IG73	Staphylococcus_phage	5.6e-73	100.0
WP_001135558.1\|398840_399665_+\|capsid	N4-gp56 family major capsid protein	R4IH32	Staphylococcus_phage	5.6e-148	100.0
WP_000278799.1\|399681_400008_+	Rho termination factor N-terminal domain-containing protein	A0A0E3TAL3	Staphylococcus_phage	4.3e-51	100.0
WP_000338935.1\|400007_400322_+\|head,tail	phage head-tail connector protein	R4IFL8	Staphylococcus_phage	4.0e-54	100.0
WP_000482987.1\|400314_400650_+\|head	phage head closure protein	A0A2H4PQL0	Staphylococcus_phage	5.7e-59	98.2
WP_001151335.1\|400636_401050_+	HK97 gp10 family phage protein	R4IG77	Staphylococcus_phage	2.0e-77	100.0
WP_000270196.1\|401062_401500_+	DUF3168 domain-containing protein	A0A0E3T9M9	Staphylococcus_phage	2.1e-77	100.0
WP_000046067.1\|401486_402047_+	hypothetical protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
WP_000141086.1\|402108_402603_+	hypothetical protein	R4IFM1	Staphylococcus_phage	1.2e-86	99.4
WP_001580347.1\|402623_402965_+	hypothetical protein	A0A2H4PQL5	Staphylococcus_phage	3.5e-56	100.0
WP_000414234.1\|402967_405937_+\|terminase	terminase	R4IG82	Staphylococcus_phage	1.5e-280	99.7
WP_000560193.1\|405951_406887_+\|tail	phage tail family protein	A7YGW1	Staphylococcus_virus	4.5e-178	98.7
WP_001144702.1\|406897_408781_+\|tail	phage tail protein	A0A0H4ITY6	Staphylococcus_phage	0.0e+00	99.2
WP_000323252.1\|408793_410692_+	hypothetical protein	Q4ZBQ2	Staphylococcus_phage	0.0e+00	99.1
WP_000259636.1\|410691_412515_+\|plate	BppU family phage baseplate upper protein	A0A0E3XBS0	Staphylococcus_phage	0.0e+00	100.0
WP_000869363.1\|412514_412892_+	DUF2977 domain-containing protein	A0A2H4PQW4	Staphylococcus_phage	6.9e-61	99.2
WP_015990323.1\|412901_413075_+	XkdX family protein	B2ZZ00	Staphylococcus_phage	1.0e-27	100.0
WP_000466769.1\|413115_413415_+	DUF2951 domain-containing protein	Q4ZBP8	Staphylococcus_phage	1.3e-46	100.0
WP_000524040.1\|413551_415426_+	glucosaminidase domain-containing protein	Q4ZBX1	Staphylococcus_virus	0.0e+00	100.0
WP_000276640.1\|415438_416677_+\|plate	BppU family phage baseplate upper protein	Q4ZB96	Staphylococcus_virus	8.8e-206	97.6
WP_000387945.1\|416681_417077_+	hypothetical protein	A0A0H4IPB8	Staphylococcus_phage	3.3e-66	97.7
WP_000354132.1\|417132_417570_+\|holin	phage holin	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
WP_001148131.1\|417550_418996_+	SH3 domain-containing protein	Q08JW9	Staphylococcus_phage	5.3e-295	99.6
419728:419745	attR	NA	NA	NA	NA

DBSCAN-SWA_3

483706 : 496889

Streptococcus_phage(66.67%)

integrase

attL 479614:479628|attR 495542:495556

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
479614:479628	attL	NA	NA	NA	NA
WP_000264071.1\|483706_485173_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
WP_000424966.1\|485197_486739_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
WP_000237797.1\|486806_488000_-\|integrase	site-specific integrase	A0A0S2MV79	Bacillus_phage	8.3e-44	34.2
WP_000633907.1\|488026_488227_-	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_000845143.1\|488724_488955_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	1.0e-27	78.9
WP_001227350.1\|489904_490258_+	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	2.2e-53	89.7
WP_032506803.1\|490315_490504_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	7.4e-16	61.4
WP_000691737.1\|490601_492521_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.2
WP_001791010.1\|492536_492653_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_000768373.1\|493842_494865_-	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	2.4e-132	75.5
WP_000192392.1\|494861_496889_-	membrane protein	A0A1S5SF30	Streptococcus_phage	2.3e-195	65.5
495542:495556	attR	NA	NA	NA	NA

DBSCAN-SWA_4

506146 : 514313

Streptococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000870467.1\|506146_506641_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	2.8e-54	63.4
WP_000675717.1\|506707_507487_-	abortive infection family protein	NA	NA	NA	NA
WP_001009054.1\|507528_507750_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
WP_000055376.1\|507746_508037_-	hypothetical protein	NA	NA	NA	NA
WP_000426689.1\|508033_509218_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	6.3e-161	68.1
WP_001130245.1\|509399_510803_-	DUF87 domain-containing protein	A0A1S5SFB5	Streptococcus_phage	7.5e-177	66.7
WP_000185761.1\|510824_511598_-	hypothetical protein	NA	NA	NA	NA
WP_001234191.1\|511607_511985_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	9.6e-47	76.4
WP_000421279.1\|512005_512320_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	1.2e-42	77.7
WP_000181735.1\|512519_514313_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	6.9e-26	23.8

DBSCAN-SWA_5

836532 : 844352

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244412.1\|836532_837588_-	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	2.1e-14	30.0
WP_000149342.1\|837587_838274_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|838248_838722_-	DoxX family protein	NA	NA	NA	NA
WP_001093553.1\|839063_839504_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637687.1\|839783_840368_-	hypothetical protein	NA	NA	NA	NA
WP_001062972.1\|840466_841180_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941338.1\|841183_841603_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	3.7e-07	28.7
WP_000446724.1\|841604_842273_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604514.1\|842623_843217_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_001217785.1\|843200_844352_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	1.6e-23	35.7

DBSCAN-SWA_6

856324 : 871111

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663030.1\|856324_857383_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
WP_000197271.1\|857733_858276_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429014.1\|858955_859873_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
WP_001790641.1\|859963_860065_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|860142_861648_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000930014.1\|861988_862489_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001068497.1\|862508_863375_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|864175_864574_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855505.1\|864536_866642_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562498.1\|866759_867731_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000499195.1\|868244_868400_+	hypothetical protein	NA	NA	NA	NA
WP_000876318.1\|868438_869410_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_001245577.1\|869396_870353_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000616842.1\|870349_871111_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_7

949575 : 964383

Staphylococcus_phage(89.47%)

integrase,terminase,coat

attL 952110:952128|attR 966672:966690

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000571218.1\|949575_950601_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-27	36.8
WP_000520233.1\|950593_951289_+	ABC transporter permease	NA	NA	NA	NA
WP_000732326.1\|951306_952128_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
952110:952128	attL	NA	NA	NA	NA
WP_000264182.1\|952271_953492_-\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	3.5e-98	47.3
WP_000733773.1\|953579_954308_-	staphylococcal enterotoxin type K	A0EX09	Staphylococcus_phage	2.4e-22	32.3
WP_001033317.1\|954331_955060_-	staphylococcal enterotoxin type Q	A0EX09	Staphylococcus_phage	7.9e-29	35.4
WP_000142630.1\|955234_955969_-	helix-turn-helix transcriptional regulator	Q4ZE79	Staphylococcus_phage	8.5e-132	98.4
WP_001063624.1\|956118_956331_+	helix-turn-helix transcriptional regulator	Q4ZE78	Staphylococcus_phage	3.4e-33	98.6
WP_001138298.1\|956331_956604_+	winged helix-turn-helix domain-containing protein	Q4ZE77	Staphylococcus_phage	3.4e-46	100.0
WP_000784885.1\|956615_956762_+	hypothetical protein	NA	NA	NA	NA
WP_001058492.1\|956754_956964_+	hypothetical protein	Q4ZE76	Staphylococcus_phage	7.7e-30	95.7
WP_001103946.1\|956966_957260_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	1.8e-24	61.8
WP_001002691.1\|957347_958217_+	primase C-terminal domain-containing protein	A0A1W6JQL5	Staphylococcus_phage	4.2e-162	96.9
WP_000432707.1\|958233_959691_+	hypothetical protein	A0A1W6JQD6	Staphylococcus_phage	1.4e-279	96.7
WP_001039172.1\|959992_960355_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	2.9e-64	96.7
WP_000998180.1\|960356_960641_+	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	1.6e-49	98.9
WP_001019783.1\|960637_961279_+	hypothetical protein	Q4ZE67	Staphylococcus_phage	2.7e-113	94.8
WP_001190616.1\|961727_962069_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	1.6e-56	98.2
WP_000846279.1\|962080_962659_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	3.3e-30	40.0
WP_000448776.1\|962676_962895_+	hypothetical protein	NA	NA	NA	NA
WP_000771365.1\|962945_963473_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	1.6e-87	96.0
WP_025174984.1\|963604_963817_+	hypothetical protein	Q4ZE86	Staphylococcus_phage	3.2e-31	97.1
WP_001281786.1\|963813_964383_+\|terminase	terminase small subunit	A0A1W6JQF0	Staphylococcus_phage	1.2e-101	98.4
966672:966690	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1130272 : 1138745

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861572.1\|1130272_1130755_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
WP_001010412.1\|1130741_1131866_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174053.1\|1131869_1132574_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_000848350.1\|1132573_1132837_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666799.1\|1132838_1133510_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032727.1\|1133502_1135692_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
WP_000483713.1\|1135670_1137155_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000030812.1\|1137147_1138176_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
WP_000238664.1\|1138178_1138745_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_9

1396937 : 1402978

Staphylococcus_phage(83.33%)

capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001789891.1\|1396937_1397135_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4
WP_001789892.1\|1397822_1398047_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	4.3e-18	71.0
WP_001002340.1\|1398340_1398547_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
WP_001788716.1\|1399247_1399358_+	hypothetical protein	NA	NA	NA	NA
WP_000006110.1\|1399785_1399971_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
WP_000477492.1\|1400482_1400587_+	hypothetical protein	NA	NA	NA	NA
WP_000956747.1\|1400715_1400967_+	hypothetical protein	NA	NA	NA	NA
WP_170964240.1\|1401108_1401597_+\|capsid	minor capsid protein	A0A2H4IYR8	uncultured_Caudovirales_phage	2.5e-23	76.7
WP_000195429.1\|1401805_1402978_+\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0

DBSCAN-SWA_10

1680294 : 1688606

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213908.1\|1680294_1681080_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000924214.1\|1681205_1682096_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062180.1\|1682105_1683452_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
WP_000683931.1\|1683565_1684666_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_000624584.1\|1684668_1685346_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1685476_1686583_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217261.1\|1686806_1688606_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0

DBSCAN-SWA_11

1759077 : 1768120

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364542.1\|1759077_1759596_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_000594993.1\|1759617_1761891_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
WP_000749795.1\|1762093_1764373_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1764647_1764908_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1764926_1766066_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019171.1\|1766088_1767114_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005767.1\|1767115_1768120_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_12

1900306 : 1981048

Staphylococcus_phage(94.92%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001050552.1\|1900306_1906867_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	2.0e-304	98.1
WP_000836465.1\|1907192_1907504_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_001549041.1\|1907525_1909943_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
WP_001025061.1\|1910230_1911412_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_000526539.1\|1911521_1912475_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_000764419.1\|1912471_1913035_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000757543.1\|1913154_1913556_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000195429.1\|1913920_1915093_+\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_000266096.1\|1916466_1917294_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001790712.1\|1917296_1917416_-	hypothetical protein	NA	NA	NA	NA
WP_001196354.1\|1917527_1918529_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_001008551.1\|1918650_1919115_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001159024.1\|1919127_1920309_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.6e-225	99.2
WP_000493893.1\|1920319_1920952_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.9e-111	99.0
WP_000077344.1\|1920958_1922002_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.3e-197	99.4
WP_001261678.1\|1922482_1923985_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_000221179.1\|1924507_1924822_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
WP_000989121.1\|1924821_1926114_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
WP_000163235.1\|1926131_1926527_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
WP_001032833.1\|1926820_1927675_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1927950_1928175_-	hypothetical protein	NA	NA	NA	NA
WP_000671052.1\|1928373_1928844_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
WP_001153742.1\|1928956_1929400_+	competence protein ComK	NA	NA	NA	NA
WP_001030465.1\|1929386_1929830_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
WP_001168904.1\|1930125_1930761_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001096494.1\|1931200_1931914_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091445.1\|1932173_1932476_+	hypothetical protein	NA	NA	NA	NA
WP_001200542.1\|1932731_1933097_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000623471.1\|1933093_1933447_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
WP_000453322.1\|1935510_1936362_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.0e-154	97.8
WP_000366154.1\|1936573_1937482_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
WP_000933822.1\|1937606_1938800_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000109906.1\|1939170_1940763_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
WP_000093392.1\|1940898_1941384_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
WP_002868962.1\|1941758_1942505_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.1e-142	98.4
WP_000672014.1\|1942509_1942983_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
WP_000718107.1\|1943048_1943306_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000778523.1\|1943302_1944304_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
WP_000348360.1\|1944308_1945787_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.0e-281	97.0
WP_011443643.1\|1945945_1946401_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.0e-79	98.6
WP_001795535.1\|1946703_1947354_+	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	2.7e-44	88.4
WP_000070653.1\|1947434_1948430_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
WP_000669046.1\|1948505_1949132_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	7.1e-79	82.7
WP_000627551.1\|1949172_1949517_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	6.3e-53	92.0
WP_000414205.1\|1949614_1950166_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
WP_000494956.1\|1950383_1951025_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.6e-76	93.2
WP_000809857.1\|1951138_1951324_-	hypothetical protein	NA	NA	NA	NA
WP_000375476.1\|1951325_1951502_-	hypothetical protein	NA	NA	NA	NA
WP_000070811.1\|1951512_1951896_-	hypothetical protein	NA	NA	NA	NA
WP_001549059.1\|1952499_1952643_-\|transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
WP_001801861.1\|1952845_1952941_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA
WP_001791893.1\|1953063_1953165_+	hypothetical protein	NA	NA	NA	NA
WP_001037045.1\|1953512_1953890_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000072576.1\|1960704_1961904_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.5e-229	99.7
WP_000028659.1\|1961896_1963453_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.3e-288	99.4
WP_001791797.1\|1963616_1963751_-	hypothetical protein	NA	NA	NA	NA
WP_001038688.1\|1963815_1964535_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
WP_001038759.1\|1964685_1965402_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
WP_011447030.1\|1965503_1965611_+	hypothetical protein	NA	NA	NA	NA
WP_001038704.1\|1965559_1966279_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
WP_001038867.1\|1966399_1967119_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
WP_001039447.1\|1967176_1967899_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
WP_001039435.1\|1968023_1968731_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.6e-130	100.0
WP_001092763.1\|1969694_1970261_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
WP_000586140.1\|1970734_1971433_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
WP_000581552.1\|1971429_1972191_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
WP_001096791.1\|1972187_1972880_-	lantibiotic protection ABC transporter ATP-binding subunit	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
WP_000691541.1\|1972902_1974276_-	S8 family serine peptidase	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
WP_000504439.1\|1974285_1974804_-	flavoprotein	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
WP_000566596.1\|1974819_1976064_-	lanthionine synthetase C family protein	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
WP_001803290.1\|1976056_1977799_-	lantibiotic dehydratase	A0A2H4PQG8	Staphylococcus_phage	2.5e-259	54.1
WP_000416756.1\|1977863_1978007_-	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
WP_000416759.1\|1978743_1978887_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA
WP_000782464.1\|1979127_1980111_-	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
WP_000473590.1\|1980112_1981048_-	bi-component leukocidin LukED subunit E	A0A2H4PQI5	Staphylococcus_phage	5.1e-174	99.7

DBSCAN-SWA_13

2064835 : 2164286

116

Staphylococcus_phage(91.03%)

portal,tail,head,capsid,terminase,tRNA,protease,holin,integrase

attL 2128163:2128180|attR 2154210:2154227

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000545370.1\|2064835_2066263_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_000027928.1\|2066275_2067733_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_000170162.1\|2067734_2068037_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_000957012.1\|2068403_2069942_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000831698.1\|2070030_2071230_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_000774565.1\|2071242_2073246_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
WP_000992921.1\|2073249_2075442_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272068.1\|2075438_2076131_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|2076302_2076605_-	hypothetical protein	NA	NA	NA	NA
WP_000572878.1\|2076713_2078009_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_000827748.1\|2078869_2080036_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434933.1\|2080066_2080393_+	staphostatin A	NA	NA	NA	NA
WP_000669862.1\|2080684_2080858_-	NETI motif-containing protein	NA	NA	NA	NA
WP_000011542.1\|2080838_2081441_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000040873.1\|2081711_2082533_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.8e-69	52.7
WP_000284431.1\|2082525_2083995_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.5e-108	45.1
WP_000897635.1\|2084178_2085255_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_001177818.1\|2085274_2086069_+	prephenate dehydratase	NA	NA	NA	NA
WP_001802312.1\|2086140_2086248_+	hypothetical protein	NA	NA	NA	NA
WP_000323161.1\|2086258_2087821_-	SLC13 family permease	NA	NA	NA	NA
WP_000275730.1\|2088025_2089123_-	pectate lyase	U5PWM6	Bacillus_phage	1.9e-47	34.6
WP_000149686.1\|2089494_2090055_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|2090107_2091037_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_001790680.1\|2091231_2091405_-	hypothetical protein	NA	NA	NA	NA
WP_001021214.1\|2091456_2092836_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000181322.1\|2092955_2093984_-	lactonase family protein	NA	NA	NA	NA
WP_000205106.1\|2094252_2094654_+	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
WP_000267034.1\|2095226_2095400_-	hypothetical protein	NA	NA	NA	NA
WP_001188077.1\|2095850_2096891_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713060.1\|2096947_2097790_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033971.1\|2097786_2098344_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966288.1\|2098403_2098928_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|2099048_2099612_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221651.1\|2099677_2100418_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763048.1\|2100417_2101290_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_000645727.1\|2101286_2101967_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991302.1\|2101967_2102864_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691584.1\|2102860_2103241_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681968.1\|2103504_2103681_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|2103923_2104022_-	hypothetical protein	NA	NA	NA	NA
WP_001068542.1\|2104221_2105508_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001549158.1\|2106132_2107887_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000669789.1\|2108844_2109024_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_001791826.1\|2109334_2109595_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000702262.1\|2109647_2109998_-	complement inhibitor SCIN-A	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
WP_000920041.1\|2111494_2111986_-	staphylokinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
WP_000861038.1\|2112176_2112932_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000611512.1\|2112943_2113198_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_072482930.1\|2113409_2113586_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	3.8e-22	96.6
WP_000750412.1\|2113694_2114468_-	staphylococcal enterotoxin type A	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
WP_000340977.1\|2114840_2115215_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_001262621.1\|2115270_2115558_-	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
WP_001000059.1\|2115603_2115756_-	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	1.7e-18	98.0
WP_000582173.1\|2115748_2119531_-	hypothetical protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.7
WP_000567408.1\|2119546_2121031_-\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
WP_001795393.1\|2121027_2125557_-\|tail	phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	100.0
WP_001096355.1\|2125801_2126152_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_072050172.1\|2126201_2126426_-	Ig-like domain-containing protein	A0A075LYE8	Staphylococcus_phage	8.8e-32	98.6
WP_000268741.1\|2126467_2127112_-\|tail	phage tail protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
WP_000565498.1\|2127112_2127520_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000114225.1\|2127516_2127921_-	HK97 gp10 family phage protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
WP_000755150.1\|2127917_2128280_-\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2128163:2128180	attL	NA	NA	NA	NA
WP_000150936.1\|2128263_2128548_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000238236.1\|2128537_2128822_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
WP_000154555.1\|2128841_2129987_-\|capsid	phage major capsid protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
WP_000861914.1\|2130010_2130748_-\|protease	Clp protease ClpP	C8CH20	Staphylococcus_phage	2.3e-129	100.0
WP_000025274.1\|2130731_2131919_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_000625088.1\|2131934_2133596_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000402904.1\|2133592_2133937_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000988336.1\|2134067_2134367_-	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
WP_000590126.1\|2134598_2135015_-	hypothetical protein	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
WP_000265039.1\|2135042_2135243_-	DUF1514 family protein	R9QT57	Staphylococcus_phage	1.4e-28	98.5
WP_000595265.1\|2135242_2135392_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_000592207.1\|2135388_2135775_-	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
WP_000195820.1\|2135771_2135978_-	DUF1381 domain-containing protein	A0A1X9H0C2	Staphylococcus_phage	1.3e-21	100.0
WP_001066444.1\|2136014_2136551_-	dUTP diphosphatase	A0A1X9H0S5	Staphylococcus_phage	1.4e-96	100.0
WP_000197967.1\|2136543_2136954_-	hypothetical protein	C8CH13	Staphylococcus_phage	2.3e-70	100.0
WP_001065024.1\|2136950_2137436_-	DUF1024 family protein	A0A1X9H0D4	Staphylococcus_phage	3.6e-70	93.4
WP_001105604.1\|2137428_2137713_-	hypothetical protein	S4V9L1	Staphylococcus_phage	2.1e-46	97.9
WP_000982711.1\|2137709_2138159_-	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	2.1e-80	99.3
WP_000178986.1\|2138223_2138472_-	hypothetical protein	A0A0K1LL46	Staphylococcus_phage	1.2e-40	97.6
WP_000111491.1\|2138468_2138726_-	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
WP_000401969.1\|2139110_2139515_-	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
WP_000338528.1\|2139523_2139742_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000148333.1\|2139748_2140642_-	DnaD domain-containing protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
WP_000934759.1\|2140671_2141142_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
WP_064135358.1\|2141142_2141760_-	MBL fold metallo-hydrolase	A0A1P8L6F7	Staphylococcus_phage	1.2e-86	100.0
WP_000180598.1\|2141840_2142761_-	recombinase RecT	A0A1P8L6F6	Staphylococcus_phage	8.6e-166	99.7
WP_000700555.1\|2142762_2144706_-	AAA family ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
WP_001205732.1\|2144714_2144978_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_001814567.1\|2144986_2145247_-	DUF1108 family protein	D2JGJ8	Staphylococcus_phage	5.8e-43	100.0
WP_000138304.1\|2145227_2145557_-	hypothetical protein	D2JGJ7	Staphylococcus_phage	1.4e-33	100.0
WP_000066017.1\|2145646_2145808_-	DUF1270 domain-containing protein	D2JGJ6	Staphylococcus_phage	4.3e-20	100.0
WP_001120197.1\|2145804_2146125_-	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
WP_000275058.1\|2146183_2146816_+	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
WP_000939496.1\|2146830_2146971_-	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
WP_001148861.1\|2147001_2147199_-	hypothetical protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
WP_001148653.1\|2147214_2147964_-	phage antirepressor KilAC domain-containing protein	O80074	Staphylococcus_phage	2.0e-136	100.0
WP_000180411.1\|2148014_2148344_+	hypothetical protein	A0A0H3U4Z1	Staphylococcus_phage	4.6e-53	100.0
WP_001025404.1\|2148332_2148548_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
WP_000854072.1\|2148563_2148827_-	helix-turn-helix transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
WP_001801500.1\|2148823_2148997_-	hypothetical protein	NA	NA	NA	NA
WP_001031454.1\|2148959_2149673_+	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
WP_000759682.1\|2149688_2150621_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
WP_000591749.1\|2150626_2150968_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
WP_000705248.1\|2151171_2151354_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
WP_000825947.1\|2151453_2151918_+	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
WP_000857191.1\|2151976_2153014_+\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
WP_000595324.1\|2154132_2155149_-	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	1.1e-25	29.0
2154210:2154227	attR	NA	NA	NA	NA
WP_000791407.1\|2155170_2156226_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
WP_000206638.1\|2156660_2157884_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_000825510.1\|2159160_2160072_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001045079.1\|2160232_2161540_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000022887.1\|2162392_2162836_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001797573.1\|2163000_2163378_-	hypothetical protein	NA	NA	NA	NA
WP_001293058.1\|2163695_2164286_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.1e-97	95.8

DBSCAN-SWA_14

2179157 : 2312303

149

Staphylococcus_phage(93.75%)

tail,terminase,holin,integrase,transposase

attL 2198978:2198997|attR 2307245:2307264

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001052278.1\|2179157_2180408_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	7.6e-40	31.2
WP_000581077.1\|2180614_2180839_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_001260014.1\|2181758_2183297_-	recombinase family protein	A0A0N9RZT8	Staphylococcus_phage	5.3e-277	100.0
WP_001281071.1\|2183286_2183868_-	DNA-binding protein	A0A0N9SK69	Staphylococcus_phage	1.6e-101	97.9
WP_001130902.1\|2184069_2184663_-	RusA family crossover junction endodeoxyribonuclease	A0A0N7GFG7	Staphylococcus_phage	7.9e-112	100.0
WP_001083475.1\|2184646_2185039_-	hypothetical protein	A0A0N9RRM7	Staphylococcus_phage	2.0e-63	96.9
WP_000487602.1\|2185040_2185787_-	NTP pyrophosphohydrolase	A0A0N9SIY2	Staphylococcus_phage	5.3e-121	88.7
WP_000414358.1\|2185799_2186039_-	hypothetical protein	A0A0N9S8B1	Staphylococcus_phage	8.2e-36	94.9
WP_001006074.1\|2186054_2186303_-	thioredoxin family protein	A0A0N9SGY3	Staphylococcus_phage	4.0e-41	98.8
WP_000602136.1\|2186343_2186946_-	AAA family ATPase	A0A0N9RTZ3	Staphylococcus_phage	9.8e-110	99.0
WP_000196388.1\|2186973_2187996_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N9SK77	Staphylococcus_phage	4.3e-198	99.7
WP_071813268.1\|2188040_2188397_-	ribonucleoside-diphosphate reductase	A0A2H4J2N6	uncultured_Caudovirales_phage	5.9e-38	60.2
WP_000049477.1\|2188710_2191620_-	intein-containing class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A0N7GFG8	Staphylococcus_phage	0.0e+00	99.4
WP_000509886.1\|2191641_2192088_-	hypothetical protein	A0A0N9STF9	Staphylococcus_phage	5.1e-71	93.2
WP_001807395.1\|2192087_2192501_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A0N9RZU5	Staphylococcus_phage	8.9e-70	97.8
WP_000992381.1\|2192530_2192683_-	hypothetical protein	A0A0N9SK94	Staphylococcus_phage	4.7e-21	98.0
WP_001145748.1\|2192701_2193403_-	hypothetical protein	A0A0N9RRN5	Staphylococcus_phage	1.8e-123	96.6
WP_000389908.1\|2193414_2193924_-	siphovirus Gp157 family protein	A0A0N9SIY9	Staphylococcus_phage	7.3e-82	97.0
WP_000729421.1\|2194053_2194656_-	hypothetical protein	A0A0N9S8C0	Staphylococcus_phage	1.8e-55	89.2
WP_000824898.1\|2194655_2194886_-	hypothetical protein	A0A0N9SGZ7	Staphylococcus_phage	1.8e-32	100.0
WP_000356944.1\|2194899_2195082_-	hypothetical protein	A0A0N7GFG9	Staphylococcus_phage	3.1e-27	100.0
WP_000792728.1\|2195084_2195438_-	hypothetical protein	A0A0N9RU04	Staphylococcus_phage	1.2e-59	100.0
WP_000598580.1\|2195470_2196469_-	DNA cytosine methyltransferase	A0A0N9SK84	Staphylococcus_phage	3.1e-193	99.7
WP_001108802.1\|2196483_2197170_-	methyltransferase domain-containing protein	A0A0N9SHZ9	Staphylococcus_phage	4.0e-123	96.1
WP_000460098.1\|2197159_2197351_-	hypothetical protein	A0A0N9STH2	Staphylococcus_phage	5.2e-33	96.8
WP_000416626.1\|2197343_2197955_-	nucleoside 2-deoxyribosyltransferase	A0A0N9RZV9	Staphylococcus_phage	4.9e-109	97.5
WP_000404790.1\|2197917_2198148_-	hypothetical protein	A0A0N9SKA8	Staphylococcus_phage	8.2e-25	96.6
WP_000865652.1\|2198147_2198399_-	hypothetical protein	A0A0N9RRP5	Staphylococcus_phage	3.8e-39	100.0
WP_000937287.1\|2198421_2198727_-	hypothetical protein	A0A0N7GFH0	Staphylococcus_phage	1.8e-51	100.0
WP_001031085.1\|2198707_2198995_-	hypothetical protein	A0A0N9SIZ8	Staphylococcus_phage	2.3e-40	92.6
2198978:2198997	attL	NA	NA	NA	NA
WP_000041332.1\|2198987_2199254_-	hypothetical protein	A0A0N9S8D1	Staphylococcus_phage	4.3e-41	97.7
WP_000119719.1\|2199264_2199438_-	hypothetical protein	A0A0N9SH07	Staphylococcus_phage	8.9e-24	100.0
WP_001098622.1\|2199553_2199937_-	DUF3139 domain-containing protein	A0A0N9RU12	Staphylococcus_phage	2.6e-47	94.7
WP_001157078.1\|2200023_2201322_-	ATP-dependent DNA ligase	A0A0N9SK95	Staphylococcus_phage	2.6e-240	98.1
WP_000866402.1\|2201331_2201646_-	hypothetical protein	A0A0N9SI08	Staphylococcus_phage	4.7e-39	81.7
WP_001215077.1\|2201784_2202165_-	hypothetical protein	A0A0N9STI1	Staphylococcus_phage	8.8e-48	96.0
WP_000350441.1\|2202277_2204764_-	hypothetical protein	A0A0N7GFH1	Staphylococcus_phage	0.0e+00	99.5
WP_000335153.1\|2205108_2206545_-	PHP domain-containing protein	A0A0N9SKC7	Staphylococcus_phage	2.7e-275	98.3
WP_000154133.1\|2207100_2207595_+	hypothetical protein	A0A0N9SJ02	Staphylococcus_phage	1.0e-64	96.4
WP_000195429.1\|2208221_2209394_+\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_001028141.1\|2209530_2210970_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	A0A0N9SKF6	Staphylococcus_phage	8.5e-285	100.0
WP_000393259.1\|2210970_2211363_-	GNAT family N-acetyltransferase	A0A0N7GFH7	Staphylococcus_phage	6.9e-72	100.0
WP_000195429.1\|2211419_2212592_-\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_072387101.1\|2212984_2213392_-	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3
WP_001079938.1\|2213364_2213937_-	HTH domain-containing protein	A0A1B0RXM1	Streptococcus_phage	5.5e-102	99.5
WP_001096887.1\|2214212_2215007_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
WP_002505594.1\|2215514_2215766_-	hypothetical protein	A0A1B0RXL7	Streptococcus_phage	2.5e-27	98.7
WP_001043218.1\|2216612_2217335_-	hypothetical protein	A0A0N7GFH2	Staphylococcus_phage	1.4e-89	98.3
WP_000686449.1\|2217443_2218244_-	metallophosphoesterase	A0A0N9SKA2	Staphylococcus_phage	4.0e-151	100.0
WP_000280790.1\|2218247_2218742_-	hypothetical protein	A0A0N9SI15	Staphylococcus_phage	5.2e-85	98.8
WP_000755772.1\|2218798_2219068_-	hypothetical protein	A0A0N9STI7	Staphylococcus_phage	6.9e-39	100.0
WP_032605691.1\|2219051_2219243_-	hypothetical protein	A0A0N9RZX7	Staphylococcus_phage	8.6e-20	82.5
WP_001179607.1\|2219544_2219940_-	type II toxin-antitoxin system death-on-curing family toxin	A0A0N9SKD8	Staphylococcus_phage	6.7e-59	90.1
WP_000258939.1\|2219939_2220170_-	addiction module antitoxin	A0A0N9RRQ9	Staphylococcus_phage	6.5e-30	85.5
WP_000639078.1\|2220345_2220867_-	metallophosphoesterase	A0A0N9SJ06	Staphylococcus_phage	1.9e-93	94.2
WP_000411528.1\|2220866_2221517_-	hypothetical protein	A0A0N7GFH3	Staphylococcus_phage	3.5e-113	96.3
WP_001807410.1\|2221516_2221834_-	hypothetical protein	A0A0N9S8E9	Staphylococcus_phage	1.2e-42	82.7
WP_000197304.1\|2221826_2222552_-	metallophosphoesterase	A0A0N9SH20	Staphylococcus_phage	4.8e-135	95.9
WP_000829423.1\|2222551_2222773_-	hypothetical protein	A0A0N9RU28	Staphylococcus_phage	5.5e-34	95.9
WP_000063384.1\|2222792_2222969_-	hypothetical protein	A0A0N9SKB9	Staphylococcus_phage	3.8e-22	89.7
WP_000858632.1\|2222961_2223504_-	hypothetical protein	A0A0N9SI25	Staphylococcus_phage	7.2e-96	97.2
WP_000691100.1\|2223518_2223791_-	hypothetical protein	A0A0N9STJ5	Staphylococcus_phage	6.7e-42	96.7
WP_000792995.1\|2223816_2223972_-	transcriptional regulator	A0A0N9RZY5	Staphylococcus_phage	2.2e-18	98.0
WP_000312832.1\|2224085_2224253_-	hypothetical protein	A0A0N7GFH4	Staphylococcus_phage	3.0e-24	98.2
WP_001187008.1\|2224268_2224454_-	hypothetical protein	A0A0N9SKE7	Staphylococcus_phage	1.5e-24	100.0
WP_000401832.1\|2224438_2224618_-	hypothetical protein	A0A0N9RRR6	Staphylococcus_phage	1.1e-21	91.5
WP_000833764.1\|2224631_2225114_-	hypothetical protein	A0A0N9SJ15	Staphylococcus_phage	8.8e-69	94.3
WP_000924986.1\|2225115_2225304_-	Lar family restriction alleviation protein	A0A0N9S8F9	Staphylococcus_phage	4.5e-29	95.2
WP_000867237.1\|2225309_2225501_-	hypothetical protein	A0A0N9SH33	Staphylococcus_phage	6.2e-18	88.0
WP_000742009.1\|2225497_2225725_-	hypothetical protein	NA	NA	NA	NA
WP_000403510.1\|2225729_2225996_-	hypothetical protein	A0A0N9RU37	Staphylococcus_phage	3.6e-40	95.5
WP_000800820.1\|2225985_2226189_-	hypothetical protein	A0A1W6JP82	Staphylococcus_phage	9.2e-20	72.3
WP_001041170.1\|2226207_2226459_-	hypothetical protein	NA	NA	NA	NA
WP_000042824.1\|2226732_2226966_-	hypothetical protein	A0A0N7GFH5	Staphylococcus_phage	2.6e-34	97.4
WP_000359470.1\|2226987_2227212_-	hypothetical protein	A0A0N9SI40	Staphylococcus_phage	5.7e-31	98.6
WP_000862563.1\|2227217_2227565_-	thermonuclease family protein	A0A0N9STK3	Staphylococcus_phage	4.4e-62	100.0
WP_000937215.1\|2227561_2227972_-	hypothetical protein	A0A0N9RZZ6	Staphylococcus_phage	1.1e-72	97.1
WP_000312937.1\|2228011_2228275_-	hypothetical protein	A0A0N9SKF2	Staphylococcus_phage	6.9e-44	100.0
WP_000239839.1\|2228277_2228649_-	hypothetical protein	A0A2H4JFL4	uncultured_Caudovirales_phage	3.9e-16	38.7
WP_048666632.1\|2228651_2228960_-	hypothetical protein	A0A0N9RRS4	Staphylococcus_phage	1.3e-41	85.3
WP_000022947.1\|2229252_2229528_-	hypothetical protein	A0A0N7GFH6	Staphylococcus_phage	2.0e-41	92.3
WP_000404899.1\|2229540_2229738_-	hypothetical protein	A0A0N9SH39	Staphylococcus_phage	3.2e-25	92.3
WP_000542668.1\|2229748_2230786_-	hypothetical protein	A0A0N9RU46	Staphylococcus_phage	8.8e-191	97.7
WP_000389289.1\|2231042_2231780_-	ribonuclease Z	A0A0N9RZK9	Staphylococcus_phage	7.0e-134	99.6
WP_000865239.1\|2231973_2233740_-	single-stranded DNA-binding protein	A0A0N9SK20	Staphylococcus_phage	0.0e+00	99.7
WP_000459730.1\|2233742_2234855_-	hypothetical protein	A0A0N9RRG7	Staphylococcus_phage	1.8e-218	99.7
WP_001048214.1\|2234871_2236404_-	helicase DnaB	A0A0N9SIU7	Staphylococcus_phage	2.4e-293	99.0
WP_001807409.1\|2236425_2236944_-	hypothetical protein	A0A0N9S850	Staphylococcus_phage	1.8e-91	99.4
WP_000050755.1\|2237020_2237989_-	ATP-binding protein	A0A0N9SGS5	Staphylococcus_phage	1.0e-180	99.4
WP_000852323.1\|2238111_2239071_-	hypothetical protein	A0A0N7GFF9	Staphylococcus_phage	6.7e-169	100.0
WP_000668931.1\|2239114_2239795_-	hypothetical protein	A0A0N9RTS7	Staphylococcus_phage	2.0e-127	100.0
WP_000364656.1\|2239812_2240301_-	hypothetical protein	A0A0N9SK25	Staphylococcus_phage	2.3e-53	99.4
WP_000035084.1\|2240316_2240565_-	hypothetical protein	A0A0N9SHT9	Staphylococcus_phage	1.7e-39	97.6
WP_001110387.1\|2240723_2241728_-	hypothetical protein	A0A0N9ST56	Staphylococcus_phage	1.0e-183	99.4
WP_001030860.1\|2241739_2243020_-	hypothetical protein	A0A0N9RZM2	Staphylococcus_phage	1.1e-235	99.8
WP_000993078.1\|2243318_2244362_-\|integrase	site-specific integrase	A0A0N9SK33	Staphylococcus_phage	8.0e-192	98.6
WP_000759940.1\|2245053_2245482_-	hypothetical protein	A0A0N9RRH5	Staphylococcus_phage	9.5e-75	98.6
WP_000725702.1\|2245559_2246081_-	hypothetical protein	A0A0N7GFG0	Staphylococcus_phage	1.7e-89	98.3
WP_000228097.1\|2246080_2246344_-	hypothetical protein	A0A0N9SIV3	Staphylococcus_phage	4.3e-38	89.7
WP_000195429.1\|2246513_2247686_+\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_001825093.1\|2247712_2247865_-	hypothetical protein	A0A0N9SIV3	Staphylococcus_phage	1.3e-15	95.3
WP_000997332.1\|2247978_2248659_-	hypothetical protein	A0A0N9S858	Staphylococcus_phage	8.5e-118	93.4
WP_000688801.1\|2248754_2249078_-	hypothetical protein	A0A0N9RTT7	Staphylococcus_phage	1.7e-52	92.5
WP_000793800.1\|2249125_2249785_-	antirestriction protein ArdA	A0A0N9SK30	Staphylococcus_phage	2.2e-115	93.2
WP_000931951.1\|2249939_2250329_-	hypothetical protein	A0A0N9SHU5	Staphylococcus_phage	1.3e-62	93.0
WP_000353835.1\|2250465_2250726_-	hypothetical protein	A0A0N9ST70	Staphylococcus_phage	3.5e-40	98.8
WP_032605705.1\|2250800_2251016_-	hypothetical protein	A0A0N7GFG1	Staphylococcus_phage	2.2e-32	94.4
WP_000424936.1\|2251467_2251752_-	hypothetical protein	A0A0N9SK40	Staphylococcus_phage	1.2e-44	96.8
WP_001003199.1\|2251797_2252076_-	hypothetical protein	NA	NA	NA	NA
WP_000622391.1\|2253749_2254007_-	hypothetical protein	A0A0N9RRI7	Staphylococcus_phage	4.3e-14	95.0
WP_000391470.1\|2255871_2256747_-	hypothetical protein	A0A0N9SIV7	Staphylococcus_phage	6.3e-166	99.7
WP_000409961.1\|2256782_2259068_-	AAA family ATPase	A0A0N9S864	Staphylococcus_phage	0.0e+00	100.0
WP_000587450.1\|2259203_2260700_+	hypothetical protein	A0A0N9SGU3	Staphylococcus_phage	8.3e-267	98.6
WP_000163487.1\|2260958_2261288_+	HU family DNA-binding protein	A0A0N9RTU9	Staphylococcus_phage	8.1e-50	95.4
WP_000057341.1\|2261313_2261499_+	YonK family protein	A0A0N7GFG2	Staphylococcus_phage	1.7e-25	100.0
WP_000055837.1\|2261507_2262692_+	hypothetical protein	A0A0N9SK37	Staphylococcus_phage	4.8e-217	97.5
WP_001007716.1\|2264390_2265275_+	hypothetical protein	A0A0N9SHV5	Staphylococcus_phage	4.5e-172	100.0
WP_000033345.1\|2265267_2267067_+\|terminase	terminase	A0A0N9RZP6	Staphylococcus_phage	2.0e-206	99.7
WP_000389594.1\|2267084_2268647_+	hypothetical protein	A0A0N9SK48	Staphylococcus_phage	6.6e-299	100.0
WP_001043654.1\|2268639_2270019_+	hypothetical protein	A0A0N9RRJ7	Staphylococcus_phage	4.1e-244	97.8
WP_001096464.1\|2270046_2270487_+	hypothetical protein	A0A0N9SIW4	Staphylococcus_phage	3.0e-76	98.6
WP_001123863.1\|2270526_2271528_+	hypothetical protein	A0A0N9S885	Staphylococcus_phage	5.6e-110	99.5
WP_000985467.1\|2271602_2272154_+	hypothetical protein	A0A0N9SGV3	Staphylococcus_phage	1.5e-80	100.0
WP_000134539.1\|2272171_2272606_+	hypothetical protein	A0A0N9RTW0	Staphylococcus_phage	3.5e-69	100.0
WP_001086334.1\|2272595_2272913_+	hypothetical protein	A0A0N9SK47	Staphylococcus_phage	2.6e-53	100.0
WP_000384370.1\|2272916_2273582_+	hypothetical protein	A0A0N9SHW2	Staphylococcus_phage	3.8e-123	99.5
WP_001177112.1\|2273571_2274093_+	hypothetical protein	A0A0N9ST98	Staphylococcus_phage	2.0e-95	100.0
WP_000391855.1\|2274098_2274971_+	hypothetical protein	A0A0N9RZR7	Staphylococcus_phage	1.5e-159	100.0
WP_001131910.1\|2275009_2275801_+	hypothetical protein	A0A0N7GFG4	Staphylococcus_phage	8.6e-138	97.7
WP_000700062.1\|2275884_2276442_+	hypothetical protein	A0A0N9SK55	Staphylococcus_phage	2.7e-98	100.0
WP_001135527.1\|2276441_2276915_+	hypothetical protein	A0A0N9RRK6	Staphylococcus_phage	2.5e-84	98.1
WP_000963689.1\|2276930_2277947_+\|integrase	site-specific integrase	A0A0N9SIX3	Staphylococcus_phage	2.3e-196	99.4
WP_000135455.1\|2278043_2286317_+\|tail	phage tail tape measure protein	A0A0N9S894	Staphylococcus_phage	0.0e+00	99.8
WP_001112868.1\|2286338_2288420_+	hypothetical protein	A0A0N9SGW2	Staphylococcus_phage	0.0e+00	99.3
WP_000174342.1\|2288480_2296682_+	hypothetical protein	A0A0N9RTX0	Staphylococcus_phage	0.0e+00	89.9
WP_000402626.1\|2296684_2297059_+	hypothetical protein	A0A0N9SK58	Staphylococcus_phage	8.6e-56	87.9
WP_001004732.1\|2297051_2297219_+	hypothetical protein	A0A0N7GFG5	Staphylococcus_phage	1.5e-20	96.4
WP_001807370.1\|2297260_2299930_+	hypothetical protein	A0A0N9SHX2	Staphylococcus_phage	0.0e+00	99.8
WP_000237132.1\|2299973_2300438_+	hypothetical protein	A0A0N9STA8	Staphylococcus_phage	7.4e-65	96.2
WP_000426834.1\|2300419_2300932_+	hypothetical protein	A0A0N9RZS7	Staphylococcus_phage	7.9e-44	85.3
WP_000593050.1\|2300953_2301283_+\|holin	phage holin	A0A0N9SK62	Staphylococcus_phage	1.0e-52	96.3
WP_001253875.1\|2301334_2302996_+	hypothetical protein	A0A0N9RRL9	Staphylococcus_phage	1.9e-115	91.3
WP_000991542.1\|2302995_2303523_+	hypothetical protein	A1BU75	Staphylococcus_virus	2.9e-09	29.4
WP_000856958.1\|2303679_2305182_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGX6	Staphylococcus_phage	9.8e-276	95.4
WP_000760770.1\|2305841_2306018_-	hypothetical protein	A0A0N9SK66	Staphylococcus_phage	1.8e-24	98.3
WP_000348472.1\|2306152_2307802_-	hypothetical protein	A0A0N9SHY1	Staphylococcus_phage	6.1e-312	94.5
2307245:2307264	attR	NA	NA	NA	NA
WP_000748898.1\|2307954_2308569_-	LPXTG cell wall anchor domain-containing protein	A0A0N9STB7	Staphylococcus_phage	6.8e-74	96.6
WP_001283612.1\|2309486_2310122_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_000602071.1\|2310374_2312303_+	ABC-F type ribosomal protection protein	A0A2K9L0W2	Tupanvirus	5.4e-53	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017352

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14048 : 23735

Mycobacterium_phage(28.57%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000622774.1\|14048_15593_-	QacA/B family quaternary ammonium compound efflux MFS transporter	A0A0M3UL24	Mycobacterium_phage	3.3e-32	26.8
WP_001807342.1\|15770_16337_+	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA
WP_000797248.1\|16469_16655_-	helix-turn-helix transcriptional regulator	A0A142LP09	Marinitoga_camini_virus	9.9e-05	37.9
WP_001049146.1\|16659_16998_-	hypothetical protein	NA	NA	NA	NA
WP_000583528.1\|17243_17852_-	recombinase family protein	G8I4U3	Mycobacterium_phage	1.0e-13	30.2
WP_000164963.1\|18003_18819_-	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	4.0e-05	29.8
WP_000790705.1\|18811_20254_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_000690629.1\|20225_20819_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.3e-41	50.6
WP_000726007.1\|21190_21559_+	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	E4ZFI8	Streptococcus_phage	4.2e-55	85.2
WP_000003262.1\|21551_23735_+	cadmium-translocating P-type ATPase CadA	E4ZFI9	Streptococcus_phage	3.1e-254	63.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017331

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017352

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection