CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_013891	Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome	7 crisprs	DinG,cas3,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,cas13a,DEDDh,csa3	0	20	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_013891_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013891_1

437351-437703

Unclear

I-A

Consensus_repeat	Method
GTTTTAATTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAATTACTTATTGTGAAATGTAAAT	CRT
TTATGTTTTAATTACTTATTGTGAAATGTAAAT	PILER-CR

5 spacers

cas6,cas8b2,cas7

The CRISPR arrays of NC_013891_1

>merge|NC_013891|1|437351-437703|CRISPRCasFinder,CRT,PILER-CR
GTTTTAATTACTTATTGTGAAATGTAAATAACTTTTTAGTTCGAGGTTGCTACTATATTTATTATTGTTTTAATTACTTATTGTGAAATGTAAATTTAACCCAATCCCCTCCTAAATTAACTTAACTTTTGTTTTAATTACTTATTGTGAAATGTAAATTTGAAACTTTAATTATGATGCAGTACGGCTATTATGTTTTAATTACTTATTGTGAAATGTAAATAGTTTTGTGGATGATTTCCATTGGAGACTTACCAAAGTTTTAATTACTTATTGTGAAATGTAAATCCGTCAGATTGATTATAATAGATTGTCCGTTTTTCTGTTTTAATTACTCATTGTGAAATGTAAAT

>NC_013891|1|1|437351-437703|CRISPRCasFinder
GTTTTAATTACTTATTGTGAAATGTAAAT	AACTTTTTAGTTCGAGGTTGCTACTATATTTATTATT
GTTTTAATTACTTATTGTGAAATGTAAAT	TTAACCCAATCCCCTCCTAAATTAACTTAACTTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGAAACTTTAATTATGATGCAGTACGGCTATTAT
GTTTTAATTACTTATTGTGAAATGTAAAT	AGTTTTGTGGATGATTTCCATTGGAGACTTACCAAA
GTTTTAATTACTTATTGTGAAATGTAAAT	CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT
GTTTTAATTACTCATTGTGAAATGTAAAT

>NC_013891|1|1|437351-437703|CRT
GTTTTAATTACTTATTGTGAAATGTAAAT	AACTTTTTAGTTCGAGGTTGCTACTATATTTATTATT
GTTTTAATTACTTATTGTGAAATGTAAAT	TTAACCCAATCCCCTCCTAAATTAACTTAACTTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGAAACTTTAATTATGATGCAGTACGGCTATTAT
GTTTTAATTACTTATTGTGAAATGTAAAT	AGTTTTGTGGATGATTTCCATTGGAGACTTACCAAA
GTTTTAATTACTTATTGTGAAATGTAAAT	CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT
GTTTTAATTACTCATTGTGAAATGTAAAT

>NC_013891|1|1|437541-437703|PILER-CR
TTATGTTTTAATTACTTATTGTGAAATGTAAAT	AGTTTTGTGGATGATTTCCATTGGAGACTTACCAAA
GTTTTAATTACTTATTGTGAAATGTAAATCCGT	CAGATTGATTATAATAGATTGTCCGTTTTTCT
GTTTTAATTACTCATTGTGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013891.1\|WP_012984906.1\|438462_439140_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NC_013891.1\|WP_012984904.1\|436170_437106_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_013891.1\|WP_012984899.1\|430241_431117_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|183585
NC_013891.1\|WP_012984903.1\|435787_436012_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|226677
NC_013891.1\|WP_012984908.1\|440342_442184_+\|LapB-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380190
NC_013891.1\|WP_012984896.1\|426283_427012_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_013891.1\|WP_012984905.1\|437789_438374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239632
NC_013891.1\|WP_012984911.1\|448407_449277_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_013891.1\|WP_003745596.1\|432003_432906_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_013891.1\|WP_012984897.1\|427057_427951_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176125
NC_013891.1\|WP_012984898.1\|428147_430142_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239201
NC_013891.1\|WP_003745646.1\|442737_443550_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_013891.1\|WP_012984900.1\|431182_431941_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
NC_013891.1\|WP_003751119.1\|439524_439983_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_013891.1\|WP_012984909.1\|445991_446714_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_013891.1\|WP_012984907.1\|439158_439518_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NC_013891.1\|WP_012984902.1\|434936_435533_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238872
NC_013891.1\|WP_003745644.1\|442273_442705_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_013891.1\|WP_012984901.1\|432983_434741_-\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|225487
NC_013891.1\|WP_012984910.1\|446729_448418_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884

Protein	Function_ID	Function_description	E-value
NC_013891.1\|WP_012984906.1\|438462_439140_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	3.65198e-59
NC_013891.1\|WP_012984904.1\|436170_437106_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	6.31708e-155
NC_013891.1\|WP_012984899.1\|430241_431117_+\|shikimate-dehydrogenase	gnl\|CDD\|183585	PRK12548, PRK12548, shikimate dehydrogenase.	1.55541e-136
NC_013891.1\|WP_012984903.1\|435787_436012_+\|DUF896-domain-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	2.42726e-24
NC_013891.1\|WP_012984908.1\|440342_442184_+\|LapB-repeat-containing-protein	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.26022e-127
NC_013891.1\|WP_012984896.1\|426283_427012_+\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	4.20041e-32
NC_013891.1\|WP_012984905.1\|437789_438374_+\|hypothetical-protein	gnl\|CDD\|239632	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling. They form complexes with matrix metalloproteases (MMPs) and inactivate them irreversibly by non-covalently binding their active zinc-binding sites. This group contains domains similar to the TIMP NTR domain, which binds MMPs. Members of this group may or may not function as MMP inhibitors.	0.000171294
NC_013891.1\|WP_012984911.1\|448407_449277_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	9.41193e-56
NC_013891.1\|WP_003745596.1\|432003_432906_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.56211e-40
NC_013891.1\|WP_012984897.1\|427057_427951_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176125	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.38225e-88
NC_013891.1\|WP_012984898.1\|428147_430142_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|239201	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	3.01947e-145
NC_013891.1\|WP_003745646.1\|442737_443550_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.50134e-47
NC_013891.1\|WP_012984900.1\|431182_431941_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	6.11547e-135
NC_013891.1\|WP_003751119.1\|439524_439983_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.38572e-11
NC_013891.1\|WP_012984909.1\|445991_446714_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	9.21629e-27
NC_013891.1\|WP_012984907.1\|439158_439518_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	1.54695e-63
NC_013891.1\|WP_012984902.1\|434936_435533_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238872	cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.02145e-55
NC_013891.1\|WP_003745644.1\|442273_442705_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.30478e-27
NC_013891.1\|WP_012984901.1\|432983_434741_-\|CocE/NonD-family-hydrolase	gnl\|CDD\|225487	COG2936, COG2936, Predicted acyl esterases [General function prediction only].	4.6784e-141
NC_013891.1\|WP_012984910.1\|446729_448418_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.09854e-25

>NC_013891.1|WP_012984904.1|436170_437106_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGADRLITVDLHAAQIQGFFNIPIDHLSAVPLIGDYLIEKYGDEDVVVVAPDHSGVVRARRIADRLDAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADVLLEKGAVEVIACATHSVMAGSATERLQNSKIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NC_013891.1|WP_012984903.1|435787_436012_+|DUF896-domain-containing-protein
MKLLLKNINELAAKQKNEGLTDFEKERQAVLRQEYLQKIRGTVQDNLHHVTIIDPLGDDVTPKKLKEIQAELRG
>NC_013891.1|WP_012984902.1|434936_435533_+|SGNH/GDSL-hydrolase-family-protein
MKKKLLFLGDSVTDAGRDFADGYDLGQGYVKYIADSLKTEDVTVLNRGVSANRVADLHRRIDTDAIELAPDVVTILIGINDTWFSFSRWEDTSVTAFKEVYRVILTRIKAETNAEIVLMEPFVLPYPEDRKAWRGDLDPKIGAVRELAAEFGATLIPLDGLMNALAVKHGPTYLAEDGVHPTKAGHEAIASIWLEFTK
>NC_013891.1|WP_012984901.1|432983_434741_-|CocE/NonD-family-hydrolase
MTTKMTEKMLFSPSFEYVDNGIEHGVLSPFETKEIILEKGSQIAEGFKPLDCAIKMLKDVPVQMRDGITIYTDIYLPITEEKVPVLVAWSPYGKSAGTAPRYKNLFQMLGMGNTWNSGLTKFEAPDPAYWCAHGYAVCNPDMRGIAHSEGDTTMIGSQEAEDGYDLIEWLATQSWSNGKTALTGTSYLAFSQWYIAAEQPPHLTCINPTEGLADGYRDLAFIGGIPDKNFIERLQVNHVSAKHAKREDLTKEMEAFPLADAAVWKDKVADPRKITIPAFVVASYSNTLHTMGTFRSWRSLASKEKWLRIHDRQEWPYYYDRDNIEELRRFFDYYLLGKENNWKETPTVRYSLIDFQGRNQTDLPAETFPPLATKNKRYFMNGKFRTLQITPETEDFPVKYAPENLPGRTSFQMTFDKDTDFVGYPKAKLFMEVDSYDDMDVFVWVQKLDKFGNVLSEFVVPNHGAALQDFTQEGASALRYKGAWGRLRASMRHLDSKLTTEEIPAYSFDRVEKLAKGEIVELDIVLSPLGLAYKTGETLRVVISSKDELGSVMPGTPGCTPDNKGVHVLHTGGDYASYIQLPLNN
>NC_013891.1|WP_003745596.1|432003_432906_-|LysR-family-transcriptional-regulator
MKLSTLKYFVDVAEQGNFTKAAQKLYISQPTLSRRIQELEAEIGVELFIRHRHALELSSAGEQFLVEVNDILKRVNQLTHMFDKQETPDESRQLVKIGYLANFNLSKMYELIEEFKASHPYVQFSLKPDTPMNLSDGLSNGAYDLVFNLSTYFNGSKDIEKVPFINNHLQIALPANHKFSHMKKLNFAELKEETVILLERKQSPVIVDYVISECTKHGFNLKANSYVQNLDEGLSMTSVGEGLAFLYSGMNDGTLAEKYHIKIVDLENDSTDQDIAAALDKPNENELVQELFSFIKSYFN
>NC_013891.1|WP_012984900.1|431182_431941_+|type-I-3-dehydroquinate-dehydratase
MNKVVVKNVIFGEGAPKICVPMVGKTVAALKEEAEMLKKIDLDVVEWRVDFFEGVEDLAKVEIALDEIRAILPETPILFTFRSAKEGGELAVSDAFYFELNETIAATKKVDLVDVELFNEEADVLKLIETAHKNDVKVVMSNHDFDKTPAKEEIISRLTRMEALGADLPKIAVMPKSAADVLTLLSATNEVFEKANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
>NC_013891.1|WP_012984899.1|430241_431117_+|shikimate-dehydrogenase
MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVNDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDEERLRKEISESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF
>NC_013891.1|WP_012984898.1|428147_430142_+|FAD-dependent-oxidoreductase
MTDYPSIFEPLTVKRMTIKNRVIMPPMGTNLAGLNGEFLEEHMAYYEQRAKGGTGLITIENACVDFPYGTNGTTQLRIDNDQYIPGFYKLTERLHKHGTCVSIQINHAGASAYPARLNGLQPVSASDIPSKTGGTIPRPLTVEEIYEIVDKYGAAARRAQQAGFDAVEIHGGHSYLLCQFLSPLYNKRTDEFGGSAENRARIVKLILEKVRAEVGPFFPIVLRFSADEFVDGGNHLEDILELLDYCQEEADILNVSAAINDNLYLQIDQMNLEDGWRSYLAKAVKDKFNKPTITSGNIRSPKAAEKILSEGYADLLAMGRGLIAEPNWVNKVAAGQEEMLRKCISCNIGCADHRIAKSKPIRCTVNPDIIHEDKYKETKVTRPTNIVVIGGGTAGLEAACTAAEVGCNTTLIEANEQTGGLARAIANLPDKKRIADFPNYLANRAAKLTNLKVITGTKADTALIDTFNPDVVVNATGSKPLLPPIKGLLDVIDKEGSNVHSIFGLISNIDAFTDFSNKKVAVIGGGAVGLDVVEYFSERGSDVTIVEMMPLLGKDLDMITRLSMMDIIEKNHVDVQTETALTEVAADHFKVKHDGVDAEIPFDYGFVCLGMRPERPLMEELAAYGHEKQIEIVNIGDSAATRKILEGVREGRNILTTLEKIGSL
>NC_013891.1|WP_012984897.1|427057_427951_-|LysR-family-transcriptional-regulator
MNLRQLYYFKKLAEKEHYTIAAAELSITQPSLSHSIAELERELGVYLFEKQGRNIRLTKYGRFYLTYVEKSLAELEKGEKLLHELTSPSHGNIDLGFIYTMGAHTVPELVQNFTKAENHKNTTFSFYQGATKSIIPDLKNEKFDLAICSYVENEPDIEFLPLTKQELVIVVAENHPLAQFDSIDLKDTAEYSYIFFSDTSGLRPLIDSLFKEINIQPKIGCYVEEDTAMVGLVSVDYGISIMPKISSLAHYNVKVLSINEPKHDRFIYLASLKNHYISPASKAFKDFALRYGEKYFL
>NC_013891.1|WP_012984896.1|426283_427012_+|NUDIX-hydrolase
MTEEFVKKEDALKNYSAKEFRTPDGYTSDMVLTTVKELSGVPTLHILLIKRATKNAEGRPNIEGGKWAVPGGFVEESESADQAAERELQEETGLTNIPLTAFGVFDKPGRDPRGWIISRSFYAIVPTEALEKRVAGDDAADIGLFPMTEALELPLAFDHLEILKKAFNAITEEFLLTTAIRDFLPETFSAELLYQTLNGCTKPGVLPDEVEFMENIDYLPYLEKTGELYRFNADAEAGSIYF
>NC_013891.1|WP_012984905.1|437789_438374_+|hypothetical-protein
MKKAFIPLLFLLILLASCSAPDEKLTKDTKIFKEGVINADYQVPKNLAELESNSEDIVKVKLLQNKEIGKGNNTISEVEIIEKYKGNFKSGATIDISEPWLLNTGEYQAVENYIALEKGQEYILFLSGGHDADKVSSITSLGYGKFNKTLKEQKASMNDFDTVGEVQKYDFISNTNEEVLKYQVIKKQVLEKFN
>NC_013891.1|WP_012984906.1|438462_439140_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIAKWAKENQHQLKVHSLFNEKDQVPTDSEFLIILGGPMGVSDTAEFPWLEEERDLIKQLIEQNKPVFGVCLGAQQIATALGSTISMNSEKEVGWFPVNRISTELSFFPERIDVFHWHQETFSLPNGVTHLFSSEACSNQGFLYGDNVIGLQFHFEMEKSGIEAILQIDEAFITPGKFVQSAAEIRESGIPEGNKQMLEAILDYLAEKNI
>NC_013891.1|WP_012984907.1|439158_439518_-|Lin0512-family-protein
MEKMLFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIRSQLPDNSLENMVVNIKLALPCDTDKLDEEVIRAIIPYGTVTIETMPGGMLTTSGIFLEDKEDKNDLMYIVNASVETGY
>NC_013891.1|WP_003751119.1|439524_439983_-|MarR-family-transcriptional-regulator
MNNEQSMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARLPGLTINELLTFLEISKQALHQPLAELKERQLLTIEQGTRDKRQRCIFLTAAGKELENELGAAQRKQMAQIFAETADTDGKHFTEVMEGYAKNRPGAALIKDFKE
>NC_013891.1|WP_012984908.1|440342_442184_+|LapB-repeat-containing-protein
MKKFFKLILAITCLLMLTYPTLPVFAEETSSGNNVVNIPDSALKTYLNGQLKQASDADITTEQMAQIKSVTLSGTNYTDLTGLETAVNLETLTISNTNITTLNPIKNQTSLTYLNVSGDAITDSFFPDLNQLTNLQSISVNSKNVTHNIFGKFNKLPKLRYLYAQNSMLITDISALASLENLDTLFLQFDGIDDFRPLNDFASFKNGKLKSLAAYGQNTGRTNPRIALKSGKLDYNAADQTLYLPFSMMPNPLTSFDGTVAPFSKSTSASNTYVGFNDVAVASSRLTITDDGITVSGVTKEEFDGLTELEYNARYDFPTGSYPTPPSMSSYTVSSGTYDQYFDISHTLDLTADESIGYNQYTPTNEEQFLKDINAKTDDGTAVQSNFDQVVDFDTPGEYIVTLNAENSAGLKADPVEVKVTVYAKPIITADSSISYKEKTTKTVEEFLAETHSSVTENATLTSDFNDVVDLNTPGEYTVTLNAENERGQKADPVQVIVTVTTKPGVKPTPPTPEPPTPTPEPPTPKKPTPEKPEEKKNNKKTVAKDPTKQTPTQKPKSNLTTKENNVTTTKEVTKTNEQKLPKTGDTGLGTWPVAFTSIMLGLTAIILLKKRK
>NC_013891.1|WP_003745644.1|442273_442705_+|universal-stress-protein
MDKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLAIASIVDLRAFSPNVSYDGSLEEKAELELKGNVNEYAEKARAAGVKQVETFVAKGNPKVLLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NC_013891.1|WP_003745646.1|442737_443550_-|histidine-phosphatase-family-protein
MKKNVWKLMVMFCALLLIAGCGNDSTTSKADTKEKKDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVTAAGKGLKDVDFGAAYSSDSGRAIQTANLILKESDKSADTKLQTDPRFREFNFGSYEGDLNHNMWSDIAKSQGKTLEEWQSTGLSPKDFANSVAELDKTRVKEGENWPAEDYATIQARLKDGITEVAEKESKNGDENVLLVSHGLSIGALLDTIEPGYKLPATGIQNASVTKITYKDGKFSIDDVNDMSYVEKGQK
>NC_013891.1|WP_012984909.1|445991_446714_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFESNIIPKDYRGKIVSLFKIGIEKSSPERYGDLFGSNKRKNYTFSIYLPKPKNNKNEIYLEEKNCIINFSTGDAETGIVFYNAFMYLRNKKVSFSSQNNITIKNIDIIREKKIISNKVYLKTLSPVVSRDHNKVTYKNWFYNFEDEEFEPTLKRNMLPFLIEEFGEQARFDVEKIKITPISMKKVVVYCHEIHIESSVGIFELTAEPYLQEYFLQNGLGSMTGSGFGMLEQL
>NC_013891.1|WP_012984910.1|446729_448418_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQAEIEVRANDWLINSGITGFLNIVGKENVRIDGQSLYFSTDILEGFETKYFNYFIKEYKETLAWHKIVSYKEKMEYYRAEEFASFDEKALDDLNKYTKDVVKFYLKKPNYIKVFPLIDPEANITEWLGNLTTITISKKQKFEEVKVEILESVKSTYNQIDAIIDFCASEKGLKYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYEDYKTTFLDPVFEYLDTDLSKAKYNCFICNQPIKTLKLDLSFMNDVGFDTARKTSHVWDFNNDVATCPVCRLIYSCVPAGFTYVYGEGMFVNDSFSIDKLLDVNVHMRESILHFNNEGINSNNPYRALVESITMEKEDKRRYELADIQLVRYENEHYRFNILSKKMLHILNDSKTILKSLIRCGYKEGNLNINLYKEVIQHLMNNENLFTLIHKLIFYKQTNANGLYYNMGHVAGILEINTKFLKEIDVMTNISQKQLWFVQSCGTEFKEGYYGKKSENKIAGITYKLLNALKVNDKDGFMDTLLNSYSYLAKPIPSVFMNVFSNDEAFKSVGYAFMLGVGGERTKKEDGGNTDEK
>NC_013891.1|WP_012984911.1|448407_449277_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIVFQAESANYGESLGNISALKKISRNNGDQYTYISRQAIRYNLMEQIGEKVAPVKAEGGGDKKVIQFLSEASIADFPELDFFGYLKTEKGTAGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKINENMNIAQAEIHKSYYRYTITIDLDQIGIDGTVEIDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNVVDVLDNKIVIKNIDDLLQYEDIRENTKVGIIDGQFANADEVKSKLNAESVPAFFNEIKGKIDAYYEGN

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Crispr_ID: NC_013891_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013891_2

443925-445696

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTGTGAAATGTAAAT	CRT

27 spacers

cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of NC_013891_2

>merge|NC_013891|2|443925-445696|PILER-CR,CRISPRCasFinder,CRT
GTTTTAACTACTTATTGTGAAATGTAAATAATAATGTTCAATACAATGGTGGTAATACCATGAAGGTTTTAACTACTTATTGTGAAATGTAAATAAAACCAACGACGTATAACAAAATTGGCGATGGATGTTTTAACTACTTATTGTGAAATGTAAATACTAACGTAGAAGCGGGGGCGGTAACGACTACTAGCGTTTTAACTACTTATTGTGAAATGTAAATAGATTTGAAAAAGGCAATCAAGTTTTTGGAATTTGGTTTTAACTACTTATTGTGAAATGTAAATCTTCAAAGAGCAAAATAAACAAGCACTAAAACGTTTGTTTTAACTACTTATTGTGAAATGTAAATTCTAATGGGACATGATGGTGATATCGTTGATACTTGTTTTAACTACTTATTGTGAAATGTAAATACCTGTTAGGTCGGGAGGATTCGAGAGGTTTAGTTGTTGTTTTAACTACTTATTGTGAAATGTAAATCGAACTTGTAGCGTATGCCGTTACCTACAGTGCAGTTTTAACTACTTATTGTGAAATGTAAATGACTTAGAGGAGTTAGGAGCCGTAGAATCCTCATCGTTTTAACTACTTATTGTGAAATGTAAATATGAAACCAGAAACAACGGAAAACCTTCACGAATGTTTTAACTACTTATTGTGAAATGTAAATATAGCATCCCCAGCCTCATAGTTCCCCATGATAAACGTTTTAACTACTTATTGTGAAATGTAAATATTTACTTATACATGGGTCACCATGCCAAGATTTCGTTTTAACTACTTATTGTGAAATGTAAATAAAAACACAAGTGGTTCCTGAAATCGACAAATACCGTTTTAACTACTTATTGTGAAATGTAAATTCCTTTAGATACTCTCCCTCATCAAACACTATCTCCGTTTTAACTACTTATTGTGAAATGTAAATTCATTCATTCCGCTATTCCAAATCTCAATAGTATCGGTTTTAACTACTTATTGTGAAATGTAAATACGGTCTATCGAGCGAAGGCGGGAAATTTTGGTAAAGTTTTAACTACTTATTGTGAAATGTAAATTCATATTGCCCTTTCAATCCCCATCTTGCATTCATTGTTTTAACTACTTATTGTGAAATGTAAATCCCCTCGAATGGCTTCATCATCGCATGTGCCTAGGTTTTAACTACTTATTGTGAAATGTAAATATCATTATTGATGTTACTAGCAAAATTCCACTTGGTTTTAACTACTCATTGTGAAATGTAAATTAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGAGTTTTAACTACTTATTGTGAAATGTAAATTTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCGGTTTTAACTACTTATTGTGAAATGTAAATGAAAAAGAATATGTATTCCACAATGCTAGTTTTGTTTTAACTACTTATTGTGAAATGTAAATGTAATTAAAATTGTCCTATTTTCTAAATCTATCAAGGTTTTAACTACTTATTGTGAAATGTAAATTCTGCATTATCTGAATCTGATTTAGCTTGCTCCATCTGTTTTAACTACTTATTGTGAAATGTAAATGTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGAGTTTTAACTACTTATTGTGAAATGTAAATCCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTCGTTTTAACTACTTATTGTGAAATGTAAATATATACGGTATCCGGTATACTCGCCGTCCCATTCTGTTTTAACCACTTCTTATGAAATGTATAA

>NC_013891|2|2|443925-445632|PILER-CR
GTTTTAACTACTTATTGTGAAATGTAAAT	AATAATGTTCAATACAATGGTGGTAATACCATGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAACCAACGACGTATAACAAAATTGGCGATGGAT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTAACGTAGAAGCGGGGGCGGTAACGACTACTAGC
GTTTTAACTACTTATTGTGAAATGTAAAT	AGATTTGAAAAAGGCAATCAAGTTTTTGGAATTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	CTTCAAAGAGCAAAATAAACAAGCACTAAAACGTTT
GTTTTAACTACTTATTGTGAAATGTAAAT	TCTAATGGGACATGATGGTGATATCGTTGATACTT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACCTGTTAGGTCGGGAGGATTCGAGAGGTTTAGTTGTT
GTTTTAACTACTTATTGTGAAATGTAAAT	CGAACTTGTAGCGTATGCCGTTACCTACAGTGCA
GTTTTAACTACTTATTGTGAAATGTAAAT	GACTTAGAGGAGTTAGGAGCCGTAGAATCCTCATC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATGAAACCAGAAACAACGGAAAACCTTCACGAAT
GTTTTAACTACTTATTGTGAAATGTAAAT	ATAGCATCCCCAGCCTCATAGTTCCCCATGATAAAC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATTTACTTATACATGGGTCACCATGCCAAGATTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAAACACAAGTGGTTCCTGAAATCGACAAATACC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCCTTTAGATACTCTCCCTCATCAAACACTATCTCC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCATTCATTCCGCTATTCCAAATCTCAATAGTATCG
GTTTTAACTACTTATTGTGAAATGTAAAT	ACGGTCTATCGAGCGAAGGCGGGAAATTTTGGTAAA
GTTTTAACTACTTATTGTGAAATGTAAAT	TCATATTGCCCTTTCAATCCCCATCTTGCATTCATT
GTTTTAACTACTTATTGTGAAATGTAAAT	CCCCTCGAATGGCTTCATCATCGCATGTGCCTAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATCATTATTGATGTTACTAGCAAAATTCCACTTG
GTTTTAACTACTCATTGTGAAATGTAAAT	TAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCG
GTTTTAACTACTTATTGTGAAATGTAAAT	GAAAAAGAATATGTATTCCACAATGCTAGTTTT
GTTTTAACTACTTATTGTGAAATGTAAAT	GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	TCTGCATTATCTGAATCTGATTTAGCTTGCTCCATCT
GTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA
GTTTTAACTACTTATTGTGAAATGTAAAT	CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC
GTTTTAACTACTTATTGTGAAATGTAAAT

>NC_013891|2|2|443925-445696|CRISPRCasFinder
GTTTTAACTACTTATTGTGAAATGTAAAT	AATAATGTTCAATACAATGGTGGTAATACCATGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAACCAACGACGTATAACAAAATTGGCGATGGAT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTAACGTAGAAGCGGGGGCGGTAACGACTACTAGC
GTTTTAACTACTTATTGTGAAATGTAAAT	AGATTTGAAAAAGGCAATCAAGTTTTTGGAATTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	CTTCAAAGAGCAAAATAAACAAGCACTAAAACGTTT
GTTTTAACTACTTATTGTGAAATGTAAAT	TCTAATGGGACATGATGGTGATATCGTTGATACTT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACCTGTTAGGTCGGGAGGATTCGAGAGGTTTAGTTGTT
GTTTTAACTACTTATTGTGAAATGTAAAT	CGAACTTGTAGCGTATGCCGTTACCTACAGTGCA
GTTTTAACTACTTATTGTGAAATGTAAAT	GACTTAGAGGAGTTAGGAGCCGTAGAATCCTCATC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATGAAACCAGAAACAACGGAAAACCTTCACGAAT
GTTTTAACTACTTATTGTGAAATGTAAAT	ATAGCATCCCCAGCCTCATAGTTCCCCATGATAAAC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATTTACTTATACATGGGTCACCATGCCAAGATTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAAACACAAGTGGTTCCTGAAATCGACAAATACC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCCTTTAGATACTCTCCCTCATCAAACACTATCTCC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCATTCATTCCGCTATTCCAAATCTCAATAGTATCG
GTTTTAACTACTTATTGTGAAATGTAAAT	ACGGTCTATCGAGCGAAGGCGGGAAATTTTGGTAAA
GTTTTAACTACTTATTGTGAAATGTAAAT	TCATATTGCCCTTTCAATCCCCATCTTGCATTCATT
GTTTTAACTACTTATTGTGAAATGTAAAT	CCCCTCGAATGGCTTCATCATCGCATGTGCCTAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATCATTATTGATGTTACTAGCAAAATTCCACTTG
GTTTTAACTACTCATTGTGAAATGTAAAT	TAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCG
GTTTTAACTACTTATTGTGAAATGTAAAT	GAAAAAGAATATGTATTCCACAATGCTAGTTTT
GTTTTAACTACTTATTGTGAAATGTAAAT	GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	TCTGCATTATCTGAATCTGATTTAGCTTGCTCCATCT
GTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA
GTTTTAACTACTTATTGTGAAATGTAAAT	CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATATACGGTATCCGGTATACTCGCCGTCCCATTCT
GTTTTAACCACTTCTTATGAAATGTATAA

>NC_013891|2|2|443925-445696|CRT
GTTTTAACTACTTATTGTGAAATGTAAAT	AATAATGTTCAATACAATGGTGGTAATACCATGAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAACCAACGACGTATAACAAAATTGGCGATGGAT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACTAACGTAGAAGCGGGGGCGGTAACGACTACTAGC
GTTTTAACTACTTATTGTGAAATGTAAAT	AGATTTGAAAAAGGCAATCAAGTTTTTGGAATTTG
GTTTTAACTACTTATTGTGAAATGTAAAT	CTTCAAAGAGCAAAATAAACAAGCACTAAAACGTTT
GTTTTAACTACTTATTGTGAAATGTAAAT	TCTAATGGGACATGATGGTGATATCGTTGATACTT
GTTTTAACTACTTATTGTGAAATGTAAAT	ACCTGTTAGGTCGGGAGGATTCGAGAGGTTTAGTTGTT
GTTTTAACTACTTATTGTGAAATGTAAAT	CGAACTTGTAGCGTATGCCGTTACCTACAGTGCA
GTTTTAACTACTTATTGTGAAATGTAAAT	GACTTAGAGGAGTTAGGAGCCGTAGAATCCTCATC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATGAAACCAGAAACAACGGAAAACCTTCACGAAT
GTTTTAACTACTTATTGTGAAATGTAAAT	ATAGCATCCCCAGCCTCATAGTTCCCCATGATAAAC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATTTACTTATACATGGGTCACCATGCCAAGATTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	AAAAACACAAGTGGTTCCTGAAATCGACAAATACC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCCTTTAGATACTCTCCCTCATCAAACACTATCTCC
GTTTTAACTACTTATTGTGAAATGTAAAT	TCATTCATTCCGCTATTCCAAATCTCAATAGTATCG
GTTTTAACTACTTATTGTGAAATGTAAAT	ACGGTCTATCGAGCGAAGGCGGGAAATTTTGGTAAA
GTTTTAACTACTTATTGTGAAATGTAAAT	TCATATTGCCCTTTCAATCCCCATCTTGCATTCATT
GTTTTAACTACTTATTGTGAAATGTAAAT	CCCCTCGAATGGCTTCATCATCGCATGTGCCTAG
GTTTTAACTACTTATTGTGAAATGTAAAT	ATCATTATTGATGTTACTAGCAAAATTCCACTTG
GTTTTAACTACTCATTGTGAAATGTAAAT	TAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGA
GTTTTAACTACTTATTGTGAAATGTAAAT	TTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCG
GTTTTAACTACTTATTGTGAAATGTAAAT	GAAAAAGAATATGTATTCCACAATGCTAGTTTT
GTTTTAACTACTTATTGTGAAATGTAAAT	GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG
GTTTTAACTACTTATTGTGAAATGTAAAT	TCTGCATTATCTGAATCTGATTTAGCTTGCTCCATCT
GTTTTAACTACTTATTGTGAAATGTAAAT	GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA
GTTTTAACTACTTATTGTGAAATGTAAAT	CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC
GTTTTAACTACTTATTGTGAAATGTAAAT	ATATACGGTATCCGGTATACTCGCCGTCCCATTCT
GTTTTAACCACTTCTTATGAAATGTATAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_013891.1\|WP_012984915.1\|452826_453825_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_013891.1\|WP_012984906.1\|438462_439140_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NC_013891.1\|WP_003745646.1\|442737_443550_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_013891.1\|WP_012984913.1\|450112_452323_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_013891.1\|WP_012984903.1\|435787_436012_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|226677
NC_013891.1\|WP_012984908.1\|440342_442184_+\|LapB-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380190
NC_013891.1\|WP_012984905.1\|437789_438374_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239632
NC_013891.1\|WP_012984911.1\|448407_449277_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_013891.1\|WP_012984914.1\|452334_452823_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_013891.1\|WP_003751119.1\|439524_439983_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_013891.1\|WP_012984921.1\|457870_458239_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NC_013891.1\|WP_012984904.1\|436170_437106_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_013891.1\|WP_012984907.1\|439158_439518_-\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NC_013891.1\|WP_012984910.1\|446729_448418_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NC_013891.1\|WP_012984909.1\|445991_446714_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_013891.1\|WP_012984902.1\|434936_435533_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238872
NC_013891.1\|WP_003745644.1\|442273_442705_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_013891.1\|WP_041176152.1\|453829_454108_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_013891.1\|WP_012984922.1\|458384_459800_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_013891.1\|WP_012984912.1\|449254_450043_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860

Protein	Function_ID	Function_description	E-value
NC_013891.1\|WP_012984915.1\|452826_453825_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.099e-163
NC_013891.1\|WP_012984906.1\|438462_439140_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	3.65198e-59
NC_013891.1\|WP_003745646.1\|442737_443550_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.50134e-47
NC_013891.1\|WP_012984913.1\|450112_452323_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.38185e-61
NC_013891.1\|WP_012984903.1\|435787_436012_+\|DUF896-domain-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	2.42726e-24
NC_013891.1\|WP_012984908.1\|440342_442184_+\|LapB-repeat-containing-protein	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.26022e-127
NC_013891.1\|WP_012984905.1\|437789_438374_+\|hypothetical-protein	gnl\|CDD\|239632	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling. They form complexes with matrix metalloproteases (MMPs) and inactivate them irreversibly by non-covalently binding their active zinc-binding sites. This group contains domains similar to the TIMP NTR domain, which binds MMPs. Members of this group may or may not function as MMP inhibitors.	0.000171294
NC_013891.1\|WP_012984911.1\|448407_449277_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	9.41193e-56
NC_013891.1\|WP_012984914.1\|452334_452823_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.00423e-60
NC_013891.1\|WP_003751119.1\|439524_439983_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.38572e-11
NC_013891.1\|WP_012984921.1\|457870_458239_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	3.61782e-41
NC_013891.1\|WP_012984904.1\|436170_437106_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	6.31708e-155
NC_013891.1\|WP_012984907.1\|439158_439518_-\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	1.54695e-63
NC_013891.1\|WP_012984910.1\|446729_448418_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.09854e-25
NC_013891.1\|WP_012984909.1\|445991_446714_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	9.21629e-27
NC_013891.1\|WP_012984902.1\|434936_435533_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238872	cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.02145e-55
NC_013891.1\|WP_003745644.1\|442273_442705_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.30478e-27
NC_013891.1\|WP_041176152.1\|453829_454108_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.26584e-29
NC_013891.1\|WP_012984922.1\|458384_459800_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.01416e-81
NC_013891.1\|WP_012984912.1\|449254_450043_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	6.41768e-22

>NC_013891.1|WP_003745646.1|442737_443550_-|histidine-phosphatase-family-protein
MKKNVWKLMVMFCALLLIAGCGNDSTTSKADTKEKKDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVTAAGKGLKDVDFGAAYSSDSGRAIQTANLILKESDKSADTKLQTDPRFREFNFGSYEGDLNHNMWSDIAKSQGKTLEEWQSTGLSPKDFANSVAELDKTRVKEGENWPAEDYATIQARLKDGITEVAEKESKNGDENVLLVSHGLSIGALLDTIEPGYKLPATGIQNASVTKITYKDGKFSIDDVNDMSYVEKGQK
>NC_013891.1|WP_003745644.1|442273_442705_+|universal-stress-protein
MDKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLAIASIVDLRAFSPNVSYDGSLEEKAELELKGNVNEYAEKARAAGVKQVETFVAKGNPKVLLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NC_013891.1|WP_012984908.1|440342_442184_+|LapB-repeat-containing-protein
MKKFFKLILAITCLLMLTYPTLPVFAEETSSGNNVVNIPDSALKTYLNGQLKQASDADITTEQMAQIKSVTLSGTNYTDLTGLETAVNLETLTISNTNITTLNPIKNQTSLTYLNVSGDAITDSFFPDLNQLTNLQSISVNSKNVTHNIFGKFNKLPKLRYLYAQNSMLITDISALASLENLDTLFLQFDGIDDFRPLNDFASFKNGKLKSLAAYGQNTGRTNPRIALKSGKLDYNAADQTLYLPFSMMPNPLTSFDGTVAPFSKSTSASNTYVGFNDVAVASSRLTITDDGITVSGVTKEEFDGLTELEYNARYDFPTGSYPTPPSMSSYTVSSGTYDQYFDISHTLDLTADESIGYNQYTPTNEEQFLKDINAKTDDGTAVQSNFDQVVDFDTPGEYIVTLNAENSAGLKADPVEVKVTVYAKPIITADSSISYKEKTTKTVEEFLAETHSSVTENATLTSDFNDVVDLNTPGEYTVTLNAENERGQKADPVQVIVTVTTKPGVKPTPPTPEPPTPTPEPPTPKKPTPEKPEEKKNNKKTVAKDPTKQTPTQKPKSNLTTKENNVTTTKEVTKTNEQKLPKTGDTGLGTWPVAFTSIMLGLTAIILLKKRK
>NC_013891.1|WP_003751119.1|439524_439983_-|MarR-family-transcriptional-regulator
MNNEQSMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARLPGLTINELLTFLEISKQALHQPLAELKERQLLTIEQGTRDKRQRCIFLTAAGKELENELGAAQRKQMAQIFAETADTDGKHFTEVMEGYAKNRPGAALIKDFKE
>NC_013891.1|WP_012984907.1|439158_439518_-|Lin0512-family-protein
MEKMLFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIRSQLPDNSLENMVVNIKLALPCDTDKLDEEVIRAIIPYGTVTIETMPGGMLTTSGIFLEDKEDKNDLMYIVNASVETGY
>NC_013891.1|WP_012984906.1|438462_439140_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIAKWAKENQHQLKVHSLFNEKDQVPTDSEFLIILGGPMGVSDTAEFPWLEEERDLIKQLIEQNKPVFGVCLGAQQIATALGSTISMNSEKEVGWFPVNRISTELSFFPERIDVFHWHQETFSLPNGVTHLFSSEACSNQGFLYGDNVIGLQFHFEMEKSGIEAILQIDEAFITPGKFVQSAAEIRESGIPEGNKQMLEAILDYLAEKNI
>NC_013891.1|WP_012984905.1|437789_438374_+|hypothetical-protein
MKKAFIPLLFLLILLASCSAPDEKLTKDTKIFKEGVINADYQVPKNLAELESNSEDIVKVKLLQNKEIGKGNNTISEVEIIEKYKGNFKSGATIDISEPWLLNTGEYQAVENYIALEKGQEYILFLSGGHDADKVSSITSLGYGKFNKTLKEQKASMNDFDTVGEVQKYDFISNTNEEVLKYQVIKKQVLEKFN
>NC_013891.1|WP_012984904.1|436170_437106_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGADRLITVDLHAAQIQGFFNIPIDHLSAVPLIGDYLIEKYGDEDVVVVAPDHSGVVRARRIADRLDAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADVLLEKGAVEVIACATHSVMAGSATERLQNSKIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NC_013891.1|WP_012984903.1|435787_436012_+|DUF896-domain-containing-protein
MKLLLKNINELAAKQKNEGLTDFEKERQAVLRQEYLQKIRGTVQDNLHHVTIIDPLGDDVTPKKLKEIQAELRG
>NC_013891.1|WP_012984902.1|434936_435533_+|SGNH/GDSL-hydrolase-family-protein
MKKKLLFLGDSVTDAGRDFADGYDLGQGYVKYIADSLKTEDVTVLNRGVSANRVADLHRRIDTDAIELAPDVVTILIGINDTWFSFSRWEDTSVTAFKEVYRVILTRIKAETNAEIVLMEPFVLPYPEDRKAWRGDLDPKIGAVRELAAEFGATLIPLDGLMNALAVKHGPTYLAEDGVHPTKAGHEAIASIWLEFTK
>NC_013891.1|WP_012984909.1|445991_446714_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFESNIIPKDYRGKIVSLFKIGIEKSSPERYGDLFGSNKRKNYTFSIYLPKPKNNKNEIYLEEKNCIINFSTGDAETGIVFYNAFMYLRNKKVSFSSQNNITIKNIDIIREKKIISNKVYLKTLSPVVSRDHNKVTYKNWFYNFEDEEFEPTLKRNMLPFLIEEFGEQARFDVEKIKITPISMKKVVVYCHEIHIESSVGIFELTAEPYLQEYFLQNGLGSMTGSGFGMLEQL
>NC_013891.1|WP_012984910.1|446729_448418_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQAEIEVRANDWLINSGITGFLNIVGKENVRIDGQSLYFSTDILEGFETKYFNYFIKEYKETLAWHKIVSYKEKMEYYRAEEFASFDEKALDDLNKYTKDVVKFYLKKPNYIKVFPLIDPEANITEWLGNLTTITISKKQKFEEVKVEILESVKSTYNQIDAIIDFCASEKGLKYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYEDYKTTFLDPVFEYLDTDLSKAKYNCFICNQPIKTLKLDLSFMNDVGFDTARKTSHVWDFNNDVATCPVCRLIYSCVPAGFTYVYGEGMFVNDSFSIDKLLDVNVHMRESILHFNNEGINSNNPYRALVESITMEKEDKRRYELADIQLVRYENEHYRFNILSKKMLHILNDSKTILKSLIRCGYKEGNLNINLYKEVIQHLMNNENLFTLIHKLIFYKQTNANGLYYNMGHVAGILEINTKFLKEIDVMTNISQKQLWFVQSCGTEFKEGYYGKKSENKIAGITYKLLNALKVNDKDGFMDTLLNSYSYLAKPIPSVFMNVFSNDEAFKSVGYAFMLGVGGERTKKEDGGNTDEK
>NC_013891.1|WP_012984911.1|448407_449277_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIVFQAESANYGESLGNISALKKISRNNGDQYTYISRQAIRYNLMEQIGEKVAPVKAEGGGDKKVIQFLSEASIADFPELDFFGYLKTEKGTAGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKINENMNIAQAEIHKSYYRYTITIDLDQIGIDGTVEIDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNVVDVLDNKIVIKNIDDLLQYEDIRENTKVGIIDGQFANADEVKSKLNAESVPAFFNEIKGKIDAYYEGN
>NC_013891.1|WP_012984912.1|449254_450043_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVKLWQDLVNYKKPTSFQLKETYPLPPYSTVIGMIHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDATRHQIKVDNYGVSRGISTVELLVDLELLLHIIPEDPALVPVIEKAFKEPIEYPSLGRREDIATIQAVDVVEVEKRKPKENKSVNISKDYNAYVPISLAESKVVRFKSQESSVGRSKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKNDVFFLDKDDCLVFIEEEV
>NC_013891.1|WP_012984913.1|450112_452323_+|CRISPR-associated-helicase/endonuclease-Cas3
MQKYLAKSNPPETIQEHTDNLLKNYQTLKKLYPEINIDWYLLELVCLLHDLGKMNRLFQKKLGNGSGVGKEIPHGYLSVAFVPYSKLEDLGYSEDEIQVVYQAIARHHERKKDFTEQEWETEIEKLSEQWETFFYERLADNADYSSEIDEIYFYPEARIFEGEDTVEIETFKNYVQLKGLLNRIDFAASAGIDVELENDFLQESMEHQLANFREKNAAADWNLLQKYMLQHQNENVVVIAETGMGKTEAGLLWLGNHKGFFTLPLRTAINAIYTRVTREIVTDKQAQRVGLLHSETYSQYLFHEENTEMEIDEYYTRTRQMSLPVTICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCVMTATLPGIVLDLLHDNGVDFIQPEEKFVSERVRHSVEVVHTEIDSAFIEPFFAGNRILVICNTISKAKKIYSELKAMFPNKKVRLIHSQFIKKDRSKKEEEIFEDGQKDNPESCIWVATQVVEASLDIDFDLLFTELSDINGLFQRMGRCYRNRALEVDTNVYVFDGGEKVCSGVGQFIDKTIFMNSKKALEKCNGALTEMKKMEIVEQIYSTEALKESEFYDELTQALNYVKSFDSYELDKKEVRSKFRNINSITAIPSTVWQENEEEITSYMEILAKSSKEVSKKEKMIARTNLAEFMLNIPDYLYKKSEGEVHRINRYETVIEFKCDYSEDIGIIMQEKQKESLFF
>NC_013891.1|WP_012984914.1|452334_452823_+|CRISPR-associated-protein-Cas4
MRISGTHVYYYFVCKRKLWCFSKEIRMEHLDENVQLGKLLDETSYTRENGQVMIDETVNIDFIKDWKVLHEVKKSRAIEEAGIWQLKYYMYFLKQRGIVIEKGVVDYPKIRQRETIFLLEEDESEIEKVLTEIENITTDMKPPKVIDKPLCKKCAYYEYCYI
>NC_013891.1|WP_012984915.1|452826_453825_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MRKIESYYLFSDGELKRKDNVIRLTAPDGRFKDLKVEMTREIFLFGEVNMNTKGLNYIGQLGIPVHIFNYYGFYSGSYYPRETNVSGQLLIAQVENYTDEKKRLYIASEFIEAASFNLLRNLRYYKQRGKDVTKEMDEIKFLRKSIGKMEDIQSLMGIEGNIRKTYYEAWQKIINQEIDFEKRVKRPPDNMINTLISYVNSLVYSSCLTEIYKTQLNPVISYLHSAGERRFSLCLDIAEIFKPLIADRIIFSLLNKNVITEDNFEKEANFCYMNKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEGFKIWW
>NC_013891.1|WP_041176152.1|453829_454108_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISVENGGAKVWRNVFKICKRYLTHVQKSVFEGEITPALLVKLRMELDKYIRSDMDSVIVFSSRQQKWLEKEFWGLTDEKTSNFF
>NC_013891.1|WP_012984921.1|457870_458239_-|DUF1304-domain-containing-protein
MTILAFILTFIVMIEHIYIMILEMFFSNTNLAAKTFGVEKELLANRKVQTLFANQGLYNGFLAAGLAWGLFFAGDTFAGSVQIFFLSCVVIAALFGGATSSRGILVKQGVPAVLALVAVLLV
>NC_013891.1|WP_012984922.1|458384_459800_+|multidrug-efflux-MFS-transporter
MQQERAMERKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAAISPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGIKYMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGENGWGSATVLTAIIVGGISLALFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFVVAVIALFFLTRIETDTTALTIIVLHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMTAGQKAYMETAQGAGPEEMVASLTAGIQNAFVFGLIMACIGLVCSLFIRKAK

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Crispr_ID: NC_013891_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013891_3

454307-456081

Unclear

I-A

Consensus_repeat	Method
GTTTTAATTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAATTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAATTACTTATTGTGAAATGTAAAT	CRT

27 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_013891_3

>merge|NC_013891|3|454307-456081|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATTACTTATTGTGAAATGTAAATGAATACTGAAACGGCTGTTCAAGCTAATTATTTTTGTTTTAATTACTTATTGTGAAATGTAAATCTTTTTAACTTAAATTATATTATACTAATTAAGTTTGGTTTTAATTACTTATTGTGAAATGTAAATAAATTTAGGAGGAACTTAAAAATGAACAGATACGGTTTTAATTACTTATTGTGAAATGTAAATCTCTTCCGCGAGTGCCTTTTGACTCTTGTAGCGCTTTGTTTTAATTACTTATTGTGAAATGTAAATCAGGTAATCAAGCTGAAACGATTAAAGGAATTAAAGAGTTTTAATTACTTATTGTGAAATGTAAATTTGGGAATTCGTGGTAATATTGTACTACGGGAATAAGGTTTTAATTACTTATTGTGAAATGTAAATGCACGAGGCGAATCGGCAGGAATAGGTTCCTTCATTGTTTTAATTACTTATTGTGAAATGTAAATATACCCAATTGCCATTCTCATCTCGTTCATAGTCCCGTTTTAATTACTTATTGTGAAATGTAAATGTATTTAGGTTGAGATTAACATACCCGAAATAACTATCGTTTTAATTACTTATTGTGAAATGTAAATTTGGACTTTAGTTTGACTGTCTCTGGTACTTTAGTCGTTTTAATTACTTATTGTGAAATGTAAATTCAGGCAACACCTTAAGCGCCTTGAATAGATTCAGTTTTAATTACTTATTGTGAAATGTAAATCAGAAGCAATGCACCAGCCACCGCTAAAAATGTAATCGTTTTAATTACTTATTGTGAAATGTAAATGCAGTTACAAATTTAATAATTTCATTTCTATATTTTAGTTTTAATTACTTATTGTGAAATGTAAATTCTTGTATTGCTTCTTTAATACACATGCGCATATGTTTTAATTACTTATTGTGAAATGTAAATCCTCGAAAGTACGTATGAGCTTGTAACGGGATTCATGTTTTAATTACTTATTGTGAAATGTAAATCTACCTTGCAGCGACAGCGCGTAAGTCGCAACATCGTTTTAATTACTTATTGTGAAATGTAAATTCTGTTGCAAACGCTATGCGTATTGCAGAAGTGCTGTTTTAATTACTTATTGTGAAATGTAAATCGCTGTCATGGCATAAGTATGGACCGTGGAATTATAGTTTTAATTACTTATTGTGAAATATAAATACGAGATGGTAAGAACGCATTGTTTGACTCGCTCCAGTTTTAATTACTTATTGTGAAATGTAAATAAAAGTATTCGCTTCTTTGATAAATCAATTCCATCAAGTTTTAATTACTTATTGTGAAATGTAAATGCAGGAAAGGGAGAAACTTCATTAGATGGGCTAAAGGTTTTAATTACTTATTGTGAAATGTAAATAGATGTGCCGGACTTCACCTATGTGCCAGTTAAGGTTTTAATTACTTATTGTGAAATGTAAATTTCAAAAACGGGCAAGGAGAACAAGAAGCTGATTTTAGTTTTAATTACTTATTGTGAAATGTAAATATAATTTCTTTTATCTTTTCATTCTTATCGTTTTAATTACTTATTGTGAAATGTAAATCGAATAAGTAGAGCTGGGATTATAATAATTTCCTTCAGTTTTAATTACTTATTGTGAAATGTAAATAAAAATGGATGAAGCAGGGTATGATGCAGAATGGGAGTTTTAATTACTCATTGTGAAATATAAATAAAAGTTCGATTGCTTTTTAATCGTCCAAATATTGTTTTAAACACTTATCATGAAATATAACC

>NC_013891|3|3|454307-456018|PILER-CR
GTTTTAATTACTTATTGTGAAATGTAAAT	GAATACTGAAACGGCTGTTCAAGCTAATTATTTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	CTTTTTAACTTAAATTATATTATACTAATTAAGTTTG
GTTTTAATTACTTATTGTGAAATGTAAAT	AAATTTAGGAGGAACTTAAAAATGAACAGATACG
GTTTTAATTACTTATTGTGAAATGTAAAT	CTCTTCCGCGAGTGCCTTTTGACTCTTGTAGCGCTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	CAGGTAATCAAGCTGAAACGATTAAAGGAATTAAAGA
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGGGAATTCGTGGTAATATTGTACTACGGGAATAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	GCACGAGGCGAATCGGCAGGAATAGGTTCCTTCATT
GTTTTAATTACTTATTGTGAAATGTAAAT	ATACCCAATTGCCATTCTCATCTCGTTCATAGTCCC
GTTTTAATTACTTATTGTGAAATGTAAAT	GTATTTAGGTTGAGATTAACATACCCGAAATAACTATC
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGGACTTTAGTTTGACTGTCTCTGGTACTTTAGTC
GTTTTAATTACTTATTGTGAAATGTAAAT	TCAGGCAACACCTTAAGCGCCTTGAATAGATTCA
GTTTTAATTACTTATTGTGAAATGTAAAT	CAGAAGCAATGCACCAGCCACCGCTAAAAATGTAATC
GTTTTAATTACTTATTGTGAAATGTAAAT	GCAGTTACAAATTTAATAATTTCATTTCTATATTTTA
GTTTTAATTACTTATTGTGAAATGTAAAT	TCTTGTATTGCTTCTTTAATACACATGCGCATAT
GTTTTAATTACTTATTGTGAAATGTAAAT	CCTCGAAAGTACGTATGAGCTTGTAACGGGATTCAT
GTTTTAATTACTTATTGTGAAATGTAAAT	CTACCTTGCAGCGACAGCGCGTAAGTCGCAACATC
GTTTTAATTACTTATTGTGAAATGTAAAT	TCTGTTGCAAACGCTATGCGTATTGCAGAAGTGCT
GTTTTAATTACTTATTGTGAAATGTAAAT	CGCTGTCATGGCATAAGTATGGACCGTGGAATTATA
GTTTTAATTACTTATTGTGAAATATAAAT	ACGAGATGGTAAGAACGCATTGTTTGACTCGCTCCA
GTTTTAATTACTTATTGTGAAATGTAAAT	AAAAGTATTCGCTTCTTTGATAAATCAATTCCATCAA
GTTTTAATTACTTATTGTGAAATGTAAAT	GCAGGAAAGGGAGAAACTTCATTAGATGGGCTAAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	AGATGTGCCGGACTTCACCTATGTGCCAGTTAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	TTCAAAAACGGGCAAGGAGAACAAGAAGCTGATTTTA
GTTTTAATTACTTATTGTGAAATGTAAAT	ATAATTTCTTTTATCTTTTCATTCTTATC
GTTTTAATTACTTATTGTGAAATGTAAAT	CGAATAAGTAGAGCTGGGATTATAATAATTTCCTTCA
GTTTTAATTACTTATTGTGAAATGTAAAT	AAAAATGGATGAAGCAGGGTATGATGCAGAATGGGA
GTTTTAATTACTCATTGTGAAATATAAAT

>NC_013891|3|3|454307-456081|CRISPRCasFinder
GTTTTAATTACTTATTGTGAAATGTAAAT	GAATACTGAAACGGCTGTTCAAGCTAATTATTTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	CTTTTTAACTTAAATTATATTATACTAATTAAGTTTG
GTTTTAATTACTTATTGTGAAATGTAAAT	AAATTTAGGAGGAACTTAAAAATGAACAGATACG
GTTTTAATTACTTATTGTGAAATGTAAAT	CTCTTCCGCGAGTGCCTTTTGACTCTTGTAGCGCTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	CAGGTAATCAAGCTGAAACGATTAAAGGAATTAAAGA
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGGGAATTCGTGGTAATATTGTACTACGGGAATAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	GCACGAGGCGAATCGGCAGGAATAGGTTCCTTCATT
GTTTTAATTACTTATTGTGAAATGTAAAT	ATACCCAATTGCCATTCTCATCTCGTTCATAGTCCC
GTTTTAATTACTTATTGTGAAATGTAAAT	GTATTTAGGTTGAGATTAACATACCCGAAATAACTATC
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGGACTTTAGTTTGACTGTCTCTGGTACTTTAGTC
GTTTTAATTACTTATTGTGAAATGTAAAT	TCAGGCAACACCTTAAGCGCCTTGAATAGATTCA
GTTTTAATTACTTATTGTGAAATGTAAAT	CAGAAGCAATGCACCAGCCACCGCTAAAAATGTAATC
GTTTTAATTACTTATTGTGAAATGTAAAT	GCAGTTACAAATTTAATAATTTCATTTCTATATTTTA
GTTTTAATTACTTATTGTGAAATGTAAAT	TCTTGTATTGCTTCTTTAATACACATGCGCATAT
GTTTTAATTACTTATTGTGAAATGTAAAT	CCTCGAAAGTACGTATGAGCTTGTAACGGGATTCAT
GTTTTAATTACTTATTGTGAAATGTAAAT	CTACCTTGCAGCGACAGCGCGTAAGTCGCAACATC
GTTTTAATTACTTATTGTGAAATGTAAAT	TCTGTTGCAAACGCTATGCGTATTGCAGAAGTGCT
GTTTTAATTACTTATTGTGAAATGTAAAT	CGCTGTCATGGCATAAGTATGGACCGTGGAATTATA
GTTTTAATTACTTATTGTGAAATATAAAT	ACGAGATGGTAAGAACGCATTGTTTGACTCGCTCCA
GTTTTAATTACTTATTGTGAAATGTAAAT	AAAAGTATTCGCTTCTTTGATAAATCAATTCCATCAA
GTTTTAATTACTTATTGTGAAATGTAAAT	GCAGGAAAGGGAGAAACTTCATTAGATGGGCTAAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	AGATGTGCCGGACTTCACCTATGTGCCAGTTAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	TTCAAAAACGGGCAAGGAGAACAAGAAGCTGATTTTA
GTTTTAATTACTTATTGTGAAATGTAAAT	ATAATTTCTTTTATCTTTTCATTCTTATC
GTTTTAATTACTTATTGTGAAATGTAAAT	CGAATAAGTAGAGCTGGGATTATAATAATTTCCTTCA
GTTTTAATTACTTATTGTGAAATGTAAAT	AAAAATGGATGAAGCAGGGTATGATGCAGAATGGGA
GTTTTAATTACTCATTGTGAAATATAAAT	AAAAGTTCGATTGCTTTTTAATCGTCCAAATATT
GTTTTAAACACTTATCATGAAATATAACC

>NC_013891|3|3|454307-456081|CRT
GTTTTAATTACTTATTGTGAAATGTAAAT	GAATACTGAAACGGCTGTTCAAGCTAATTATTTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	CTTTTTAACTTAAATTATATTATACTAATTAAGTTTG
GTTTTAATTACTTATTGTGAAATGTAAAT	AAATTTAGGAGGAACTTAAAAATGAACAGATACG
GTTTTAATTACTTATTGTGAAATGTAAAT	CTCTTCCGCGAGTGCCTTTTGACTCTTGTAGCGCTTT
GTTTTAATTACTTATTGTGAAATGTAAAT	CAGGTAATCAAGCTGAAACGATTAAAGGAATTAAAGA
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGGGAATTCGTGGTAATATTGTACTACGGGAATAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	GCACGAGGCGAATCGGCAGGAATAGGTTCCTTCATT
GTTTTAATTACTTATTGTGAAATGTAAAT	ATACCCAATTGCCATTCTCATCTCGTTCATAGTCCC
GTTTTAATTACTTATTGTGAAATGTAAAT	GTATTTAGGTTGAGATTAACATACCCGAAATAACTATC
GTTTTAATTACTTATTGTGAAATGTAAAT	TTGGACTTTAGTTTGACTGTCTCTGGTACTTTAGTC
GTTTTAATTACTTATTGTGAAATGTAAAT	TCAGGCAACACCTTAAGCGCCTTGAATAGATTCA
GTTTTAATTACTTATTGTGAAATGTAAAT	CAGAAGCAATGCACCAGCCACCGCTAAAAATGTAATC
GTTTTAATTACTTATTGTGAAATGTAAAT	GCAGTTACAAATTTAATAATTTCATTTCTATATTTTA
GTTTTAATTACTTATTGTGAAATGTAAAT	TCTTGTATTGCTTCTTTAATACACATGCGCATAT
GTTTTAATTACTTATTGTGAAATGTAAAT	CCTCGAAAGTACGTATGAGCTTGTAACGGGATTCAT
GTTTTAATTACTTATTGTGAAATGTAAAT	CTACCTTGCAGCGACAGCGCGTAAGTCGCAACATC
GTTTTAATTACTTATTGTGAAATGTAAAT	TCTGTTGCAAACGCTATGCGTATTGCAGAAGTGCT
GTTTTAATTACTTATTGTGAAATGTAAAT	CGCTGTCATGGCATAAGTATGGACCGTGGAATTATA
GTTTTAATTACTTATTGTGAAATATAAAT	ACGAGATGGTAAGAACGCATTGTTTGACTCGCTCCA
GTTTTAATTACTTATTGTGAAATGTAAAT	AAAAGTATTCGCTTCTTTGATAAATCAATTCCATCAA
GTTTTAATTACTTATTGTGAAATGTAAAT	GCAGGAAAGGGAGAAACTTCATTAGATGGGCTAAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	AGATGTGCCGGACTTCACCTATGTGCCAGTTAAG
GTTTTAATTACTTATTGTGAAATGTAAAT	TTCAAAAACGGGCAAGGAGAACAAGAAGCTGATTTTA
GTTTTAATTACTTATTGTGAAATGTAAAT	ATAATTTCTTTTATCTTTTCATTCTTATC
GTTTTAATTACTTATTGTGAAATGTAAAT	CGAATAAGTAGAGCTGGGATTATAATAATTTCCTTCA
GTTTTAATTACTTATTGTGAAATGTAAAT	AAAAATGGATGAAGCAGGGTATGATGCAGAATGGGA
GTTTTAATTACTCATTGTGAAATATAAAT	AAAAGTTCGATTGCTTTTTAATCGTCCAAATATT
GTTTTAAACACTTATCATGAAATATAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013891.1\|WP_012984915.1\|452826_453825_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_013891.1\|WP_012984926.1\|466600_468076_+\|hypothetical-protein	unknown	unknown	unknown
NC_013891.1\|WP_003745646.1\|442737_443550_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NC_013891.1\|WP_012984924.1\|463844_465503_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NC_013891.1\|WP_012984913.1\|450112_452323_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_013891.1\|WP_012984912.1\|449254_450043_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_013891.1\|WP_012984927.1\|468068_469568_+\|DUF2334-domain-containing-protein	unknown	unknown	gnl\|CDD\|227617
NC_013891.1\|WP_003751142.1\|462489_463242_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_013891.1\|WP_012984909.1\|445991_446714_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_013891.1\|WP_003745695.1\|463347_463791_+\|hypothetical-protein	unknown	unknown	unknown
NC_013891.1\|WP_012984923.1\|459927_460932_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NC_013891.1\|WP_012984921.1\|457870_458239_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NC_013891.1\|WP_012984922.1\|458384_459800_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_013891.1\|WP_012984914.1\|452334_452823_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_013891.1\|WP_012984911.1\|448407_449277_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_013891.1\|WP_012984925.1\|465619_466360_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NC_013891.1\|WP_003745644.1\|442273_442705_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_013891.1\|WP_041176152.1\|453829_454108_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_013891.1\|WP_003718625.1\|460970_462287_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NC_013891.1\|WP_012984910.1\|446729_448418_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884

Protein	Function_ID	Function_description	E-value
NC_013891.1\|WP_012984915.1\|452826_453825_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.099e-163
NC_013891.1\|WP_003745646.1\|442737_443550_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.50134e-47
NC_013891.1\|WP_012984924.1\|463844_465503_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	2.20254e-142
NC_013891.1\|WP_012984913.1\|450112_452323_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.38185e-61
NC_013891.1\|WP_012984912.1\|449254_450043_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	6.41768e-22
NC_013891.1\|WP_012984927.1\|468068_469568_+\|DUF2334-domain-containing-protein	gnl\|CDD\|227617	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown].	6.34536e-155
NC_013891.1\|WP_003751142.1\|462489_463242_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.10531e-62
NC_013891.1\|WP_012984909.1\|445991_446714_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	9.21629e-27
NC_013891.1\|WP_012984923.1\|459927_460932_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.02011e-22
NC_013891.1\|WP_012984921.1\|457870_458239_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	3.61782e-41
NC_013891.1\|WP_012984922.1\|458384_459800_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.01416e-81
NC_013891.1\|WP_012984914.1\|452334_452823_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.00423e-60
NC_013891.1\|WP_012984911.1\|448407_449277_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	9.41193e-56
NC_013891.1\|WP_012984925.1\|465619_466360_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	6.9716e-52
NC_013891.1\|WP_003745644.1\|442273_442705_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.30478e-27
NC_013891.1\|WP_041176152.1\|453829_454108_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.26584e-29
NC_013891.1\|WP_003718625.1\|460970_462287_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_013891.1\|WP_012984910.1\|446729_448418_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	5.09854e-25

>NC_013891.1|WP_041176152.1|453829_454108_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISVENGGAKVWRNVFKICKRYLTHVQKSVFEGEITPALLVKLRMELDKYIRSDMDSVIVFSSRQQKWLEKEFWGLTDEKTSNFF
>NC_013891.1|WP_012984915.1|452826_453825_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MRKIESYYLFSDGELKRKDNVIRLTAPDGRFKDLKVEMTREIFLFGEVNMNTKGLNYIGQLGIPVHIFNYYGFYSGSYYPRETNVSGQLLIAQVENYTDEKKRLYIASEFIEAASFNLLRNLRYYKQRGKDVTKEMDEIKFLRKSIGKMEDIQSLMGIEGNIRKTYYEAWQKIINQEIDFEKRVKRPPDNMINTLISYVNSLVYSSCLTEIYKTQLNPVISYLHSAGERRFSLCLDIAEIFKPLIADRIIFSLLNKNVITEDNFEKEANFCYMNKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEGFKIWW
>NC_013891.1|WP_012984914.1|452334_452823_+|CRISPR-associated-protein-Cas4
MRISGTHVYYYFVCKRKLWCFSKEIRMEHLDENVQLGKLLDETSYTRENGQVMIDETVNIDFIKDWKVLHEVKKSRAIEEAGIWQLKYYMYFLKQRGIVIEKGVVDYPKIRQRETIFLLEEDESEIEKVLTEIENITTDMKPPKVIDKPLCKKCAYYEYCYI
>NC_013891.1|WP_012984913.1|450112_452323_+|CRISPR-associated-helicase/endonuclease-Cas3
MQKYLAKSNPPETIQEHTDNLLKNYQTLKKLYPEINIDWYLLELVCLLHDLGKMNRLFQKKLGNGSGVGKEIPHGYLSVAFVPYSKLEDLGYSEDEIQVVYQAIARHHERKKDFTEQEWETEIEKLSEQWETFFYERLADNADYSSEIDEIYFYPEARIFEGEDTVEIETFKNYVQLKGLLNRIDFAASAGIDVELENDFLQESMEHQLANFREKNAAADWNLLQKYMLQHQNENVVVIAETGMGKTEAGLLWLGNHKGFFTLPLRTAINAIYTRVTREIVTDKQAQRVGLLHSETYSQYLFHEENTEMEIDEYYTRTRQMSLPVTICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCVMTATLPGIVLDLLHDNGVDFIQPEEKFVSERVRHSVEVVHTEIDSAFIEPFFAGNRILVICNTISKAKKIYSELKAMFPNKKVRLIHSQFIKKDRSKKEEEIFEDGQKDNPESCIWVATQVVEASLDIDFDLLFTELSDINGLFQRMGRCYRNRALEVDTNVYVFDGGEKVCSGVGQFIDKTIFMNSKKALEKCNGALTEMKKMEIVEQIYSTEALKESEFYDELTQALNYVKSFDSYELDKKEVRSKFRNINSITAIPSTVWQENEEEITSYMEILAKSSKEVSKKEKMIARTNLAEFMLNIPDYLYKKSEGEVHRINRYETVIEFKCDYSEDIGIIMQEKQKESLFF
>NC_013891.1|WP_012984912.1|449254_450043_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVKLWQDLVNYKKPTSFQLKETYPLPPYSTVIGMIHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDATRHQIKVDNYGVSRGISTVELLVDLELLLHIIPEDPALVPVIEKAFKEPIEYPSLGRREDIATIQAVDVVEVEKRKPKENKSVNISKDYNAYVPISLAESKVVRFKSQESSVGRSKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKNDVFFLDKDDCLVFIEEEV
>NC_013891.1|WP_012984911.1|448407_449277_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIVFQAESANYGESLGNISALKKISRNNGDQYTYISRQAIRYNLMEQIGEKVAPVKAEGGGDKKVIQFLSEASIADFPELDFFGYLKTEKGTAGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKINENMNIAQAEIHKSYYRYTITIDLDQIGIDGTVEIDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNVVDVLDNKIVIKNIDDLLQYEDIRENTKVGIIDGQFANADEVKSKLNAESVPAFFNEIKGKIDAYYEGN
>NC_013891.1|WP_012984910.1|446729_448418_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQAEIEVRANDWLINSGITGFLNIVGKENVRIDGQSLYFSTDILEGFETKYFNYFIKEYKETLAWHKIVSYKEKMEYYRAEEFASFDEKALDDLNKYTKDVVKFYLKKPNYIKVFPLIDPEANITEWLGNLTTITISKKQKFEEVKVEILESVKSTYNQIDAIIDFCASEKGLKYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYEDYKTTFLDPVFEYLDTDLSKAKYNCFICNQPIKTLKLDLSFMNDVGFDTARKTSHVWDFNNDVATCPVCRLIYSCVPAGFTYVYGEGMFVNDSFSIDKLLDVNVHMRESILHFNNEGINSNNPYRALVESITMEKEDKRRYELADIQLVRYENEHYRFNILSKKMLHILNDSKTILKSLIRCGYKEGNLNINLYKEVIQHLMNNENLFTLIHKLIFYKQTNANGLYYNMGHVAGILEINTKFLKEIDVMTNISQKQLWFVQSCGTEFKEGYYGKKSENKIAGITYKLLNALKVNDKDGFMDTLLNSYSYLAKPIPSVFMNVFSNDEAFKSVGYAFMLGVGGERTKKEDGGNTDEK
>NC_013891.1|WP_012984909.1|445991_446714_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFESNIIPKDYRGKIVSLFKIGIEKSSPERYGDLFGSNKRKNYTFSIYLPKPKNNKNEIYLEEKNCIINFSTGDAETGIVFYNAFMYLRNKKVSFSSQNNITIKNIDIIREKKIISNKVYLKTLSPVVSRDHNKVTYKNWFYNFEDEEFEPTLKRNMLPFLIEEFGEQARFDVEKIKITPISMKKVVVYCHEIHIESSVGIFELTAEPYLQEYFLQNGLGSMTGSGFGMLEQL
>NC_013891.1|WP_003745646.1|442737_443550_-|histidine-phosphatase-family-protein
MKKNVWKLMVMFCALLLIAGCGNDSTTSKADTKEKKDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVTAAGKGLKDVDFGAAYSSDSGRAIQTANLILKESDKSADTKLQTDPRFREFNFGSYEGDLNHNMWSDIAKSQGKTLEEWQSTGLSPKDFANSVAELDKTRVKEGENWPAEDYATIQARLKDGITEVAEKESKNGDENVLLVSHGLSIGALLDTIEPGYKLPATGIQNASVTKITYKDGKFSIDDVNDMSYVEKGQK
>NC_013891.1|WP_003745644.1|442273_442705_+|universal-stress-protein
MDKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLAIASIVDLRAFSPNVSYDGSLEEKAELELKGNVNEYAEKARAAGVKQVETFVAKGNPKVLLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NC_013891.1|WP_012984921.1|457870_458239_-|DUF1304-domain-containing-protein
MTILAFILTFIVMIEHIYIMILEMFFSNTNLAAKTFGVEKELLANRKVQTLFANQGLYNGFLAAGLAWGLFFAGDTFAGSVQIFFLSCVVIAALFGGATSSRGILVKQGVPAVLALVAVLLV
>NC_013891.1|WP_012984922.1|458384_459800_+|multidrug-efflux-MFS-transporter
MQQERAMERKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAAISPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGIKYMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGENGWGSATVLTAIIVGGISLALFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFVVAVIALFFLTRIETDTTALTIIVLHSVLMIGISMVMMPAQTNGLNQLPRKLYPDGTAIMNTLQQVSGAIGTAVAITIMTAGQKAYMETAQGAGPEEMVASLTAGIQNAFVFGLIMACIGLVCSLFIRKAK
>NC_013891.1|WP_012984923.1|459927_460932_+|ROK-family-transcriptional-regulator
MALPRDLKELNKRHIKSILRQRGAMTKAEIAETTDLSVVTVNKLIRALEENSEIIEQDSSVVTGGRRAISYKINPNFQQVLVVSLQEKWKKITYSFSVYNLLGEVEFVEDMSGEGLDIHELKRNIKDHVCAFPKISCIVIGVPGIEIGGRLRAMDFPLLLNVHLRETLESEVNLPVLVETDTNAAILGYKNRPVAENNIVGLYYPERFPPGAGLFINGEILKGKNGLAGEIKHMPLGIDWDNFDFSVDKIKEHIRKMVLLTMSFYDPETIVIYTNFYFGQKDFMEELTQGLAEIYPYASLPEMVLSRKFTSDYRIGLFAFGVDYLENNLTDWRI
>NC_013891.1|WP_003718625.1|460970_462287_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIADTLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NC_013891.1|WP_003751142.1|462489_463242_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVRILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQIDNEKS
>NC_013891.1|WP_003745695.1|463347_463791_+|hypothetical-protein
MYSNTKEKVVFTFIMCSLMILCMSSYNIFLENGINSEAFVIVLKAFVPFVLVGFLLDFFVVGKIASRLHGLMVSQKASTFKKVIMMQLLMVTFMCVLMSTLSLIVNQQDFSHLGMLILRNYFVALFLQIFIVSPFVRLISPRIFGLL
>NC_013891.1|WP_012984924.1|463844_465503_-|SulP-family-inorganic-anion-transporter
MFKHIFLSLNGYKASYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLTAGSKEAIALAPVLAFFCAIFLILFSILKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWLSLAMGVVTIIIVISCKKLIPKVPMSLVVLIIGTMAAYFFKLDQYNVDIVGKIPVGFPSLGLPDFAASSWTLAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGASNFVAAFSGSPPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKISRREATVWIVAAVGTLLVGVIFGVLLGIVLSFINVVSRSMQSPVAVLGVIEGRHGYFDLKRNPEAKPIPNIVIYRYSASLFFGNFGKFADGLKTAIQDDTKLVIFESSAIINIDTTSTESLKDLLKWLDEKGIEYYFADIIDHLKTSFRKHDLGFIIDEGYTKKTVEDALDDFYRKK
>NC_013891.1|WP_012984925.1|465619_466360_-|MerR-family-transcriptional-regulator
MQPKELAELTGISVRTLHHYDKIGLLTPQKDDENGYRHYSEQEVDKLQQILFFKELDFPLKKIKQILDDPSFDKSVALSLQYRLLTEKKKQIETMLKTLDQTIKNEKGEITMTNEEKFTGFDFSTNPYEEEAKKLWGDKAVEQANANISKMTNTEKLTIKESFDAEFRSLAAIRTLHPASDEAQLRMDHFFHYLNDNHGNIYSLEAFRGLGEMYVADERFTKNIDQFGDGLALFLKEAMKIYAEKN
>NC_013891.1|WP_012984926.1|466600_468076_+|hypothetical-protein
MNRKIKSISLWLWHHLTPQVFAVICVLVITLLALFIPPYIGMADNGDFFRIFSSNGLFVNNANYDNLQFGHFVKEFGIYQYFNENPVAIYSSQSIFIQIALALNKVFWSDTVFDIRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYLVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYIAAGFILLFQHKYNDYAMLGMIFVASLILITAKQQNAPIAVVIAVCGIIVFFIRRDQAFRISAMAAFLVIFMSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLQEMGINEQFALLKGTNFYQKYKMIDLDNELMQKDFYPNYNFVSVLSYYLENPKQLGKMLDLSARNSFSIRPFEMGNFEKVTGYQFKEKTHFFSAYSDAKAKLAPEKFSFLILWALIFLISYAVNAFKAFRVKDFRGMLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTILIGATSILQAYLKGRGEKHA
>NC_013891.1|WP_012984927.1|468068_469568_+|DUF2334-domain-containing-protein
MRKKIIMAFLLGLVIFFINEQDITAKADDGVTVFYDSLAKNTENEGNIDSLLRILNSMGERVMMYSWNENPDLSETSKIIVLQNKQNDLPDKWVQKLKDSKAKIAYIGGNPPAFLADKLQLKTEAVANAALTIQTNDGLTGKPQLVVNTNLITSYKGTSFGEINTTENVKSPYGVQSENYAYAPIFQANNASEFALVDVLRALFGTKKEANQYALITDVNPFVDFNMLKKTADTFYEKGIPFVVSAGPVFYNSNFMAAKNYAEILRYVQAKNGTILMNVPAVTYGASPAGELESIIQKSVHFFADNDVAALGVTAELYWNFDKVYGTEGFAPFNSGILLPNEKIIHTTKKNNGNAFEKSPFSVTSDFYGTMSGQMNFPLDIAITYPFFNSEKELKAAVNQLADENISDFRLQTNEVKTIQDTIESNAGSLYINDQAITLDSDLKYLKTKKMETQKQAGSLEGFFSYQNTFFTIVIVLSLGIIGILFIFGYRLYMKKYMK

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Crispr_ID: NC_013891_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013891_4

1174057-1174422

TypeVI-A

Consensus_repeat	Method
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	CRISPRCasFinder
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	CRT
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	PILER-CR

5 spacers

cas13a

The CRISPR arrays of NC_013891_4

>merge|NC_013891|4|1174057-1174422|CRISPRCasFinder,CRT,PILER-CR
AATACGATATACCTCTAAATGAAAGAGGACTAAAACCCGCCAAAAGTATCAGAAAATGTTATTGCAGTAAGAGACTACCTCTATATGAAAGAGGACTAAAACCATATTTCCAAACTCCACTTTGACTACACCGTAAGAGACTACCTCTATATGAAAGAGGACTAAAACGGTCCCACTACTTGAGGTACGAACATATCAGTAAGAGACTACCTCTATATGAAAGAGGACTAAAACTTAGTCAACCCCTCGCTGCATTTTCACATTGTAAGAGACTACCTCTATATGAAAGAGGACTAAAACGATGGATAATAGGGATAGATCATTAGTCCGGTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC

>NC_013891|4|4|1174057-1174422|CRISPRCasFinder
AATACGATATACCTCTAAATGAAAGAGGACTAAAAC	CCGCCAAAAGTATCAGAAAATGTTATTGCA
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	CATATTTCCAAACTCCACTTTGACTACACC
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	GGTCCCACTACTTGAGGTACGAACATATCA
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	TTAGTCAACCCCTCGCTGCATTTTCACATT
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	GATGGATAATAGGGATAGATCATTAGTCCG
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC

>NC_013891|4|4|1174057-1174422|CRT
AATACGATATACCTCTAAATGAAAGAGGACTAAAAC	CCGCCAAAAGTATCAGAAAATGTTATTGCA
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	CATATTTCCAAACTCCACTTTGACTACACC
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	GGTCCCACTACTTGAGGTACGAACATATCA
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	TTAGTCAACCCCTCGCTGCATTTTCACATT
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	GATGGATAATAGGGATAGATCATTAGTCCG
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC

>NC_013891|4|4|1174123-1174422|PILER-CR
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	CATATTTCCAAACTCCACTTTGACTACACC
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	GGTCCCACTACTTGAGGTACGAACATATCA
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	TTAGTCAACCCCTCGCTGCATTTTCACATT
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC	GATGGATAATAGGGATAGATCATTAGTCCG
GTAAGAGACTACCTCTATATGAAAGAGGACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013891.1\|WP_012985479.1\|1179396_1179747_+\|hypothetical-protein	unknown	unknown	unknown
NC_013891.1\|WP_041176170.1\|1184324_1185737_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NC_013891.1\|WP_012985483.1\|1182711_1183119_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|225356
NC_013891.1\|WP_012985473.1\|1170994_1171420_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NC_013891.1\|WP_012985478.1\|1177975_1179385_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368093
NC_013891.1\|WP_012985474.1\|1171703_1172705_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_013891.1\|WP_012985467.1\|1165780_1166554_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235506
NC_013891.1\|WP_012985470.1\|1168183_1169188_+\|hypothetical-protein	unknown	unknown	unknown
NC_013891.1\|WP_012985481.1\|1180933_1181725_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|227259
NC_013891.1\|WP_012985485.1\|1183939_1184200_-\|hypothetical-protein	unknown	unknown	unknown
NC_013891.1\|WP_012985480.1\|1179867_1180011_+\|hypothetical-protein	unknown	unknown	unknown
NC_013891.1\|WP_012985477.1\|1174427_1177790_+\|type-VI-A-CRISPR-associated-RNA-guided-ribonuclease-Cas13a	cas13a	cas13a_c2c2_CAS-VI-A	unknown
NC_013891.1\|WP_148213641.1\|1170003_1170909_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366736
NC_013891.1\|WP_012985469.1\|1167688_1168165_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181235
NC_013891.1\|WP_012985484.1\|1183284_1183893_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NC_013891.1\|WP_012985471.1\|1169184_1169925_+\|acid-phosphatase	unknown	unknown	gnl\|CDD\|223570
NC_013891.1\|WP_077904629.1\|1173157_1173376_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_013891.1\|WP_041176169.1\|1166667_1167681_+\|hypothetical-protein	unknown	unknown	unknown
NC_013891.1\|WP_012985482.1\|1181984_1182578_-\|YdeI-family-protein	unknown	unknown	gnl\|CDD\|226851
NC_013891.1\|WP_012985476.1\|1173572_1173833_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_013891.1\|WP_041176170.1\|1184324_1185737_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	3.31441e-141
NC_013891.1\|WP_012985473.1\|1170994_1171420_+\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	1.02878e-13
NC_013891.1\|WP_012985478.1\|1177975_1179385_+\|hypothetical-protein	gnl\|CDD\|368093	pfam04740, LXG, LXG domain of WXG superfamily. This domain is present is the N-terminal region of a group of polymorphic toxin proteins in bacteria. It is predicted to use Type VII secretion pathway to mediate export of bacterial toxins.	1.56749e-20
NC_013891.1\|WP_148213641.1\|1170003_1170909_+\|hypothetical-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	5.30713e-05
NC_013891.1\|WP_012985471.1\|1169184_1169925_+\|acid-phosphatase	gnl\|CDD\|223570	COG0496, SurE, Predicted acid phosphatase [General function prediction only].	1.06809e-37
NC_013891.1\|WP_077904629.1\|1173157_1173376_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.01305e-15
NC_013891.1\|WP_012985482.1\|1181984_1182578_-\|YdeI-family-protein	gnl\|CDD\|226851	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown].	1.2959e-88
NC_013891.1\|WP_012985474.1\|1171703_1172705_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.15147e-58
NC_013891.1\|WP_012985469.1\|1167688_1168165_+\|AAA-family-ATPase	gnl\|CDD\|181235	PRK08118, PRK08118, DNA topology modulation protein.	1.80538e-21
NC_013891.1\|WP_012985483.1\|1182711_1183119_-\|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl\|CDD\|225356	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown].	4.03266e-48
NC_013891.1\|WP_012985481.1\|1180933_1181725_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|227259	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown].	1.36043e-18
NC_013891.1\|WP_012985484.1\|1183284_1183893_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	4.97728e-46
NC_013891.1\|WP_012985467.1\|1165780_1166554_+\|glucose-1-dehydrogenase	gnl\|CDD\|235506	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	3.39214e-72

>NC_013891.1|WP_012985476.1|1173572_1173833_+|hypothetical-protein
MVPYFQQGETTSDSKNVVKVQSNLTKQEIGHYFLEGEKCQVTVRAWSAFQVDNQKKTENQVLLDLELVKIETGKWFIDSQEIATIN
>NC_013891.1|WP_077904629.1|1173157_1173376_-|tyrosine-type-recombinase/integrase
MCNRLNIQPITCHVLRHTHGSVLLYHGLNIKYISRRLVHSDIVTTLQIYSHVLDELEQMENRKVDTIMERLF
>NC_013891.1|WP_012985474.1|1171703_1172705_+|IS256-family-transposase
MNDFTTEIVQTLVTKGDLNELFRFHLEKALNTLLRTELTAYLAHDKYERIRFHSGNSRNGTYQRRIKTEYGELTVEIPRERKGEFQQQTLPAYKRTNDTLESTIIHLFEKGVTMSEIADLIEKMYGHHYTPQTVSNMTKVLTEEVNAFKVRSLYKQYAAIFMDATYIPLKRQTVSKEAIYIAIVIREDGTKEVLSYAIAPTESIHIWNELLQDIYSRGVQDVLLFITDGLKAMKDTIHQIYPKVTQSLIENQNLLTFYEFPTSIRRSIYSTNLIESFNKQIKKYSRRKEQFQNEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLASKFSE
>NC_013891.1|WP_012985473.1|1170994_1171420_+|NUDIX-hydrolase
MRIRECSRAVIVNEFNEILLQKFEFKDVVGNKILWVTPGGGMEDGETEALALKRELNEELGIDIDIENESIFEIDVLIEGKKGSFISREYYYKIDMDSNTMLSLKNMTENEKDTFRDMKWWSKSDLEKIDNFAPRDIIDYF
>NC_013891.1|WP_148213641.1|1170003_1170909_+|hypothetical-protein
MMKLLPVMDLYQIKLQKYRSLNDNITYPVLLVNEKYILKRVPSEIVVNEVLFSNLVERKLIRNIVLNKYERIFTYYDSCFWLMTTYIEGKEFQHSISSHLNIAKDYIGKFRESTPDIGEMEFHDNYNIKKWYQDSDEMMSKTFQLIQHYYGELEVEYSKRVTEIYHQIEFNGDSYAKMCKSISHGEYQNTNILFYNSNQIELIDWDSLSIRPRIFDLVSSACYLCRAERGDFILEEEKLKTYLDQEKLCSVEIKNFRNMVFLTFIPREDKLEKFYLAGHNQSKWYLEWTLEAMEKSLKYFK
>NC_013891.1|WP_012985471.1|1169184_1169925_+|acid-phosphatase
MNIIIVNDDGWESKGSSYLIQKLREKNKIYAYFPYSNSSGYSNKISLNCNIDVNQVKDNYFIVKGSPVDCILVAIQDLKIKGIEIDLVISGINNGLNYGAPIIYSGTVAAALEASNYGIPSIAISFEGSLMSSRVLDDIADWLIKLPFDRIKDNSVINMNILERKDTGVFPNLIYIENEVIDYSFKLPKVTKEKMGYRIAINNSMKQNNHSDFCMIGIYNRFSGFVLDKQDKELLNELKLTFEKLG
>NC_013891.1|WP_012985470.1|1168183_1169188_+|hypothetical-protein
MDEIQIIKKLFKSLELVRKKNVPACDNAISYSENGKKYSNQFIIMIKPECLYSRNENTKEIIKLLINNLIKSNIEIGAAFSMNGKYIAQNSIIENQYFMLNKYAHLGLGSVPLNTVRNLESRVEKVNVIGAFNFLELYSDHFDEALLERIAHKNGSEKLGNGLYLLHLIHDNIPYGIINAFHPYQKKHFCNENSNLILLECYSNQPYWKLDEEIIGNFKPSDARENSIRSMLFRNQEKLGITINTMFNGVHVSPSPLEGLKALQLYFKGIDIIDTNLGNQLVELGFNYNQIQNLLNNPYVIEGNKHVTLFDKVEGRDTEEILEYLSKEKMFTVL
>NC_013891.1|WP_012985469.1|1167688_1168165_+|AAA-family-ATPase
MDNPRKIWIVGPPGSGKTTLGKELSSSKKIDCYCLDELRWKLNWEQVSDTDFEKSIKVIIDKPEWIIDGYYPGLDEYFNIADEIVYIKMPLIVLLTRICKRSYKRIKGNIEICNGNTENWKFFFSKNGIFIYTIKQYFLFKVLFQKWRNRSFRLSLRK
>NC_013891.1|WP_041176169.1|1166667_1167681_+|hypothetical-protein
MIDWYKVRRNGYAIFLYTDLASIEFVKKSIEPYYIINKVISVSEVFDSSYWKISNRPDSFKLTSDKIDIIQSKQRVLDEPERVFFVEAHERIIELIKPVDTKWRDQIVIRLIRDIFRNYFLTNDSMSFFHGGLIKSKNLGIAFMGGKKSGKTSSILSFLKYGNVDYATNDDISIQIIDDKVHGFGWPRTVSVRNDTFDVLEMDRASIIGRLRHPSNGTIWKNKATFIYPNELEQLFTTKVISNSEVNYIVFPTFDKDIYTPNLRELNRSEFKKLLELNMEPDINRYFKDFQRYFPNVDISSNNKVLDIISEKCHGIILNQNFRNLKQSVELVKKELM
>NC_013891.1|WP_012985467.1|1165780_1166554_+|glucose-1-dehydrogenase
MNSLEGKVVIVTGAGAGIGKASAVEFGLKKCKVIIVDNDKESGEVSKKLIEDSGGEATFINADITVEKDIKNMVEKVLGKYARIDILVNNVGLFNNSGMDATVEEWNEVVRANIISPFLCTKYCLPTMKENRAGAVVNVASISGFIAQENYLLYNTTKGAMINMTRCMALDLGKYNIRVNNVCPGTVWTENNEYFIKKSHNIDKRGADLHSDFGGGNMLSRVSEPKEIAKCIVFLASEDASFVTAENLVVDAGYIAK
>NC_013891.1|WP_012985477.1|1174427_1177790_+|type-VI-A-CRISPR-associated-RNA-guided-ribonuclease-Cas13a
MWISIKTLIHHLGVLFFCDYMYNRREKKIIEVKTMRITKVEVDRKKVLISRDKNGGKLVYENEMQDNTEQIMHHKKSSFYKSVVNKTICRPEQKQMKKLVHGLLQENSQEKIKVSDVTKLNISNFLNHRFKKSLYYFPENSPDKSEEYRIEINLSQLLEDSLKKQQGTFICWESFSKDMELYINWAENYISSKTKLIKKSIRNNRIQSTESRSGQLMDRYMKDILNKNKPFDIQSVSEKYQLEKLTSALKATFKEAKKNDKEINYKLKSTLQNHERQIIEELKENSELNQFNIEIRKHLETYFPIKKTNRKVGDIRNLEIGEIQKIVNHRLKNKIVQRILQEGKLASYEIESTVNSNSLQKIKIEEAFALKFINACLFASNNLRNMVYPVCKKDILMIGEFKNSFKEIKHKKFIRQWSQFFSQEITVDDIELASWGLRGAIAPIRNEIIHLKKHSWKKFFNNPTFKVKKSKIINGKTKDVTSEFLYKETLFKDYFYSELDSVPELIINKMESSKILDYYSSDQLNQVFTIPNFELSLLTSAVPFAPSFKRVYLKGFDYQNQDEAQPDYNLKLNIYNEKAFNSEAFQAQYSLFKMVYYQVFLPQFTTNNDLFKSSVDFILTLNKERKGYAKAFQDIRKMNKDEKPSEYMSYIQSQLMLYQKKQEEKEKINHFEKFINQVFIKGFNSFIEKNRLTYICHPTKNTVPENDNIEIPFHTDMDDSNIAFWLMCKLLDAKQLSELRNEMIKFSCSLQSTEEISTFTKAREVIGLALLNGEKGCNDWKELFDDKEAWKKNMSLYVSEELLQSLPYTQEDGQTPVINRSIDLVKKYGTETILEKLFSSSDDYKVSAKDIAKLHEYDVTEKIAQQESLHKQWIEKPGLARDSAWTKKYQNVINDISNYQWAKTKVELTQVRHLHQLTIDLLSRLAGYMSIADRDFQFSSNYILERENSEYRVTSWILLSENKNKNKYNDYELYNLKNASIKVSSKNDPQLKVDLKQLRLTLEYLELFDNRLKEKRNNISHFNYLNGQLGNSILELFDDARDVLSYDRKLKNAVSKSLKEILSSHGMEVTFKPLYQTNHHLKIDKLQPKKIHHLGEKSTVSSNQVSNEYCQLVRTLLTMK
>NC_013891.1|WP_012985478.1|1177975_1179385_+|hypothetical-protein
MSKIDIGEVTHFLQGLKKSNENARKMIEDIQSAVKAYADDTTLKGKAVDSSQRYFDETYTVICKSIIEALDESEERLQQYIHDFGDQVDSSPNARIDAELLQEAMSRLADIKRKQEALMQSLSSSTATLYEGKQQALHTQFTDALEQEKILERYITFEQTHGNFFDSFGELVYRTGQAVRELANNVTFESQTGSYHFDKIDASRFQTLQEMLPKAKKKAFNFNDYQITWNGTTHLLWKNGKVDAEATKAYNEAKLNGKLPKEGNVATQDAELLKGILASLKNKKDPITGADISSVHVLSILSGLAFSYTAGNYKGRKLTVPKSFLDKLKKNRKSKVPKLSSLSEKQQLKLANKYKKKSPIPIPDDAKIKAQTKKAGYEQISYKWKENGITFEVRWHTRTPGAPKEQGNTFVIERKIQGTAEGKTKVQQILVGDNKWVSKSEWQKAITDKKNGVSTSEQNKMLSDGHWKE
>NC_013891.1|WP_012985479.1|1179396_1179747_+|hypothetical-protein
MMEDYYKGFEGYPEIDFYTYIDDMKLGIAMWEGYFDNIMKEINPSNGRWTSLAYYYHLDEGWYDESPWEIPSNTEALELLETIHISNLDTITQEILLKLINLLKKNINRQVYIEYS
>NC_013891.1|WP_012985480.1|1179867_1180011_+|hypothetical-protein
MTIPNPDKRKKKEKAGVVVLSELDKKLIAKLEKDGVKISKEDVIGIK
>NC_013891.1|WP_012985481.1|1180933_1181725_-|nuclear-transport-factor-2-family-protein
MSKQKQNFYDLYTKVIGQGEVDLLPLYAAEPCIEHSVGVHDGLEGFKNFFIPFFEVFPKRNIQVTRILEDGNFVFAHAYQVLNDGVAEWMTMDIVYTNADEKIIEHWDTIAPSFTGKNKAGHTAFDGATELADFAKTADNKMLISNLYEQVYTNEKWQLIADFYAEEFIDHSEHGFLTSQELIDYYESSTTNYTLEKVYKIIGEGNFVAVFTKVMIDNKEVANIELYRIQDGKIVEYWRNMEYVVEEELWLNSGKFATITTEF
>NC_013891.1|WP_012985482.1|1181984_1182578_-|YdeI-family-protein
MAKTELNPKVDAFLNKPSKWQAEFKALRRIAIEFGLTEEFKWGKPCYALNGSNVFLIHGFKEYCALLFMKGALLGDPENILIQQTENVQAARQIRFTKLQQIIDMESVLKSYIQNAIDVEAAGLKVEMKRDKEFPIPEELQTRFDELPAFKEAFEALTPGRQRAYLLYFGSPKQSKTRVSRIEKCQEQIFDGLGLND
>NC_013891.1|WP_012985483.1|1182711_1183119_-|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MVLNVYLTFRTQSRDAIAFYEEVFGGKCTDLMTYGEVHPENEPIDDELKDLVMNASLIIDGVKVMFSDIPKSMPLTFGDNITLVIDTADEIQLTKQFNQLSEGGTVIMPLAKTFWSEKYGQVTDRFGTGWQFNLS
>NC_013891.1|WP_012985484.1|1183284_1183893_+|histidine-phosphatase-family-protein
MKKKLYLMRHGQTLFNERKKIQGFCDAPLTKLGIKQAEIAGSYFKEHSIEFDKAYSSTSERASDTLELVTKTAYTRLKGLKEWNFGTFEGESEDLNPALPYGDFFAAYGGEREKDFQKRIVETMESIMSQEEHEVILAVSHGAACAQFARYWEDTSKIGKISGLKNGCILKFEYEKGIFSLVNFINHDFENGTHMEAVEKSE
>NC_013891.1|WP_012985485.1|1183939_1184200_-|hypothetical-protein
MNLEDLKNKVTESLPLENLGQLTEDTTSKATELGEQATNVTENIQNEASNLTENLQDQASGLTENLQDTANELTGGFLDKIKNLFQ
>NC_013891.1|WP_041176170.1|1184324_1185737_+|DEAD/DEAH-box-helicase
MNNLKLSEEIKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEENKPQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSATMPDEMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQTENKEKTLQDVLITENPDSAIIFCNTKNQVDELSDLLQVNAAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDVENVTLVINYDLPVEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEDMLNITIEKKRKPTIIEVKASEEAFRKKQQKRPIIKKARGEKLNKNIMKLYFNGGKKKKIRAVDFVGTISKLEGITSEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARKR

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Crispr_ID: NC_013891_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013891_5

1902570-1902656

Orphan

Consensus_repeat	Method
ATTGATTGTTAGAACAATAAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_013891_5

>merge|NC_013891|5|1902570-1902656|CRISPRCasFinder
GCTGATTATTATCACAATGAAGATATTTTAAAGCAGGGGCATTATTTAAATCTATATTCGCCAACTGATTATCAGAACAATAAAGAT

>NC_013891|5|5|1902570-1902656|CRISPRCasFinder
GCTGATTATTATCACAATGAAGA	TATTTTAAAGCAGGGGCATTATTTAAATCTATATTCGCCA
ACTGATTATCAGAACAATAAAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013891.1\|WP_012986002.1\|1904623_1905001_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NC_013891.1\|WP_012985996.1\|1896014_1896647_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NC_013891.1\|WP_012986006.1\|1906845_1908357_-\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|215211
NC_013891.1\|WP_012985999.1\|1901082_1901391_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_013891.1\|WP_012985997.1\|1897408_1898221_+\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NC_013891.1\|WP_012986011.1\|1912820_1914503_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NC_013891.1\|WP_012986009.1\|1909849_1910794_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|213790
NC_013891.1\|WP_012986004.1\|1906084_1906708_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NC_013891.1\|WP_003752951.1\|1892987_1893521_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|237597
NC_013891.1\|WP_012986001.1\|1903727_1904606_-\|PhzF-family-phenazine-biosynthesis-isomerase	unknown	unknown	gnl\|CDD\|129739
NC_013891.1\|WP_003748500.1\|1893560_1894175_-\|DUF2140-family-protein	unknown	unknown	gnl\|CDD\|227042
NC_013891.1\|WP_012985993.1\|1892543_1892981_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NC_013891.1\|WP_012986003.1\|1904997_1905990_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NC_013891.1\|WP_012985995.1\|1894990_1895830_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NC_013891.1\|WP_012985994.1\|1894190_1894976_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|239947
NC_013891.1\|WP_012985998.1\|1898240_1900880_+\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_013891.1\|WP_012986010.1\|1910806_1912699_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_013891.1\|WP_003748506.1\|1896766_1897396_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|341387
NC_013891.1\|WP_012986008.1\|1909351_1909837_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NC_013891.1\|WP_012986007.1\|1908423_1909299_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841

Protein	Function_ID	Function_description	E-value
NC_013891.1\|WP_012986002.1\|1904623_1905001_-\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.79371e-46
NC_013891.1\|WP_012985996.1\|1896014_1896647_+\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	2.15755e-69
NC_013891.1\|WP_012986006.1\|1906845_1908357_-\|phosphoglucomutase	gnl\|CDD\|215211	PLN02371, PLN02371, phosphoglucosamine mutase family protein.	0
NC_013891.1\|WP_012985999.1\|1901082_1901391_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	7.88827e-18
NC_013891.1\|WP_012985997.1\|1897408_1898221_+\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	6.40357e-128
NC_013891.1\|WP_012986011.1\|1912820_1914503_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NC_013891.1\|WP_012986009.1\|1909849_1910794_-\|thymidylate-synthase	gnl\|CDD\|213790	TIGR03284, thym_sym, thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NC_013891.1\|WP_012986004.1\|1906084_1906708_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.51861e-46
NC_013891.1\|WP_003752951.1\|1892987_1893521_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	3.17352e-96
NC_013891.1\|WP_012986001.1\|1903727_1904606_-\|PhzF-family-phenazine-biosynthesis-isomerase	gnl\|CDD\|129739	TIGR00654, Uncharacterized_isomerase_YddE, phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear. [Cellular processes, Toxin production and resistance].	3.21173e-71
NC_013891.1\|WP_003748500.1\|1893560_1894175_-\|DUF2140-family-protein	gnl\|CDD\|227042	COG4698, COG4698, Uncharacterized protein conserved in bacteria [Function unknown].	3.07515e-74
NC_013891.1\|WP_012985993.1\|1892543_1892981_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.21049e-90
NC_013891.1\|WP_012986003.1\|1904997_1905990_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.18726e-101
NC_013891.1\|WP_012985995.1\|1894990_1895830_-\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	3.22047e-114
NC_013891.1\|WP_012985994.1\|1894190_1894976_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|239947	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	3.59847e-86
NC_013891.1\|WP_012985998.1\|1898240_1900880_+\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_013891.1\|WP_012986010.1\|1910806_1912699_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NC_013891.1\|WP_003748506.1\|1896766_1897396_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|341387	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.29946e-62
NC_013891.1\|WP_012986008.1\|1909351_1909837_-\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	1.34881e-91
NC_013891.1\|WP_012986007.1\|1908423_1909299_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	3.3984e-41

>NC_013891.1|WP_012985999.1|1901082_1901391_+|carboxymuconolactone-decarboxylase-family-protein
MKVSKSFEVFAKEAPEVQAAWMETVQKLDAASKLDKKTEELAYIAVMAAVRLESGIPFHVKMAKSNGATRDEIISAILVGLPAVGNIVTTSLPAAIEAYDEE
>NC_013891.1|WP_012985998.1|1898240_1900880_+|pyruvate,-phosphate-dikinase
MRKFVYQFSEGSKEMKNLLGGKGANLAEMTNIGLPVPPGFIISTAACNDYTNSNKHLSEDIFEEVKIHLAELERQTGNIFGFKDNPLLVSVRSGAPFSMPGMMDTVLNLGLNDATAKGLASLTNDSRSALDSYRRFIQMFGDVVFEIPSYHFEQALTQIKKTNNYLLDTELTAEDLSELVATYKTIFTQATGQNFPQEPLEQLRLAIIAVFNSWMNPRAVIYRRLNNIDASFGTAVNIQAMVFGNTGETSGTGITFTRNPSTGEKAIFGEFLLNAQGEDVVAGIRTPEPIKALEERMPIVYNELIKTCELLENHYLDMQDIEFTIEKEKLFILQTRSGKRTAKAAIQVAVDLVHEGKITKAEALMRVETKQLDQLLHPTFVESALKVGQVLATGLPASPGAATGQIYFTAKEAVQAAERGISVILVRNETSPEDIEGMAKSDAILTAHGGMTSHAAVVARGMGKCCIAGCSELIINEKEKTIILKNGTQLHEGEQISLNGTSGKVYLGEIELTEAAIGGHFDELMTWADEEKQLMIRVNADTPADFKKALLLGAEGIGLCRTEHMFFDEKRIPYVRQMILAESLAERESVLTTLKEMQKEDFTALFRIADGRAVNIRLLDPPLHEFLPTTNREIEQLASEMNRTVPQLTKRIHSLAETNPMLGHRGSRLAITFPEIYRMQAEAIIESAVIVHDEGIAVHPEIMIPLIATKSELKYIKKEIKHAIHSIFDKERVVLPYDIGTMIEIPRACVTADEIAEEAQFFSFGTNDLTQLTYGFSRDDAAKFLSDYYEKNILPNDPFVTIDKEGVGALVEMAVTRGRMTHANLKMGVCGEHGGDPESIRFFHQLGLSYVSCSPYRVPIARLAAAQASLHEKKMLTTV
>NC_013891.1|WP_012985997.1|1897408_1898221_+|kinase/pyrophosphorylase
MENPVIIYVISDAIGETAQHIIRAVTAQFSFQKPADIRRHAFIRDEKALLETLEEAKEADGIVVQTLVQAKLAEYATDFCSNNHIPNIDLLHTLTTAIETKTGLKSKQDPGNMRRLDSNYFDRIAAIEFAVKYDDCKDPRGLIDADIVLVGVSRTSKTPLSSFLANQNWKVANVPLVPEIPIPDELFQIPQERIIGLTTTPDKLAQIRKVRLKSIGLDEASSYSSEKRILEELEYGYTTFKKLGCQVIHVEDKAIEETAALITEIITSYH
>NC_013891.1|WP_003748506.1|1896766_1897396_+|helix-turn-helix-transcriptional-regulator
MIPIELSSRQHQIVAYVRANEPATGDSIAAHLKLTRATIRADLSILTMTGILDARPKVGYFYSGLETNPIHFDEIRQLKVSDIMTQPFFAKKETSVYDAIVMLFMEDIGSLYVIDEEELVGLVSRKDLLKGALADADTKATPIATIMTRMPNLITVTKNDKVLHAAEQLVFHQIDSLPVLETKAGKTKVVGKISKTRITALFVDTIKKV
>NC_013891.1|WP_012985996.1|1896014_1896647_+|hemolysin-III-family-protein
MNVTSYNWKEELANAITHGIGFILSIPALVLLIVFAVQKDNPLYLTSFLVYGISLMLLYVCSTLLHSFKPCKARTVFNIMDHAAIYVLIAGSYTPFVLITIQGTLGWTLFGIIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYTGLTPAGFWLLATGGIMFTVGAIFYSIPKVPYMHAIWHLFVIAGTAFMYFCILFYV
>NC_013891.1|WP_012985995.1|1894990_1895830_-|DegV-family-protein
MRKIKIITDSTAGLTQEEAAKWNIDILYLTVEIDGKVYNPKTDITPEGFMDRMAETKELPKSSQPAIGSFVEAYEKYTAEGYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDSDYTARGQAFQVLAAAEMAQSGDFSVEEIHAKINDIRDKTKLYIVVVTLDNLIKGGRVGRMQGFLGSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLVKDEPKKIQHLDVVHANGLNLADEFISETKEITGLTEIPLFFADPVISTHAGAGAFAFMYYTD
>NC_013891.1|WP_012985994.1|1894190_1894976_-|SGNH/GDSL-hydrolase-family-protein
MTKKKWLWLTGSVLVIALLVGAVFGIKYYREAQEVPVKLVAMGDSLTEGVGDEDKNGGYVGIIPDKLEEESNVPSVKTSNYGVSGNKITQLEKRLKTNKTFQQDVKNANVITITIGGNDVMAILQSRLLDVDVADFTKANKNFQQELENLLTDIRSYNKNAAVFLMGIYNPYTTYFSDIKEFDEVIANWNKASEKTVQKYDNVYFVPIAKVLENRDKSNKDKPNPLLSDDYFHPNHQGYEKISTELDKAIVKQLNEGNIPK
>NC_013891.1|WP_003748500.1|1893560_1894175_-|DUF2140-family-protein
MQNETRSAPKKPKRNYWKWICIILISLIVILAGWIYVAVFVSSPQTEPTPTLISNKEAVEFQTSTTKADLNQLISTYIDEFSKDQDIGYQVFVANNVNFTAEAKIFDQPVELHLKFSPKVVDDGNVELTLKDMSVGALPLPVSYVMSYVNKNYEFPDWVTISPKKEKIYLALDKLKLKGDTKVRVDTLDLKKDDISFTLLVPVN
>NC_013891.1|WP_003752951.1|1892987_1893521_-|peptide-methionine-(S)-S-oxide-reductase-MsrA
MTNKSLEKATFAGGCFWCMVKPFDTQPGIERVVSGYTGGHTVNPTYEEVCSGTTGHTEAIEITFDPAIFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVIFYHNEEQKEIAEKSKAALDASGKFKKPIVTEIAKAETFYPAEEYHQDFYKKEKAHYEGYQVASGRAAFIDANWKG
>NC_013891.1|WP_012985993.1|1892543_1892981_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MDENQKNERLKQLTDLQYNVTQKAGTEHPFKNEFYDNEAEGIYVDIVSGKPLFSSKDQYDAGCGWPSFTKPIDDQEIIENKDRTHGMIRIEVKSVDADSHLGHVFPDGPTDKGGLRYCINSAALRFIPVDKLEEEGYQAYQQIFE
>NC_013891.1|WP_012986001.1|1903727_1904606_-|PhzF-family-phenazine-biosynthesis-isomerase
MRCAVLRVDAFTTIPGQGNPAGVVLAGDTYSTDEMQKIAKKVGFNETVFICKSGLAAMKLRYFTPGFETPLCGHATMGAIFALLNGNDDQQLEIETGAGVLQINYEAKNPKITMHQATPKFINFNGDKEALCHSMNIKIEDLHPELPIQYGNTGSWTLILPVKNEQVLDQMKPDAAQFPIILKEIPKSSVHPFAIISEEESIFSARHFSSPFAETKEDSVTGTASGVMGAYSLNHIYLEEEIKDITVYQGRHVNREGRVFVHIEKDKIGAQEVSISGTACFNGKFEVEIEET
>NC_013891.1|WP_012986002.1|1904623_1905001_-|VOC-family-protein
MIKKIGQVMLYVEDQAAVRDFWVEKLDFVVVSEEVVNGEIQWIEIAPTKDVGTTFVLQNKKKVAEMNPDMNLGTPSILLFGENIAELYEEYKNKGITVGELVDLPMGRVFNFADNEGNYFAICEK
>NC_013891.1|WP_012986003.1|1904997_1905990_-|aromatic-acid-exporter-family-protein
MRIGMRTVKTAIAATLAIILAEWLHLEYAVSAGIIAILSVQNTKKGSLQLAIQRVYSTVLALSIAAIFFLLLGYNAVSFGLYLLIFIPLAVKLHVADGIVVSSVLVSHILLEQSLSFFWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQKIEAIMRQILTEMTQGLRNQSEYHDEAGLLHQLKGTLDYAQEKAARNLDNQFFASSHYYSQYVDMRLVQYRILTQMKRHLVAFHHSSEQSMALAEITEKTAQTLDEHNTAEDLVAEITKMVHEFRSSKLPETRAEFENRATLFQFMNDLRYLLEMKRDFYAEFGLQEKMKIREGDKG
>NC_013891.1|WP_012986004.1|1906084_1906708_-|DedA-family-protein
METWITSIMADFGYIGIFLLIMVENLFPPIPSEIILTFGGFMTTVSSLNVVMVIIVATLGSVVGAILLYKVASYFGKERLTKIVLKHGRILRLKESDIERAENFFLKYGSWAVFLCRMIPLIRSLISIPAGMTQMKMSRFLVLTTAGSLLWNTILIGLGAFLGESWNEIVVFMDSFSTIIYGIIAVIVVVGLGFFFRVRFKKTLDEE
>NC_013891.1|WP_012986006.1|1906845_1908357_-|phosphoglucomutase
MNQSETKALEALQNGSDIRGIAIATEKNQITLTDERVEKIAYGFAKWLKEEKQVEGQAKVAIGHDSRLSAERLKAALIKGLVFADIDVVDVGLATTPAMFMATQYEGYNCDAGIMITASHLPFMYNGLKLFTKSGGAEHEDIDYIVAHADASFIENGTNSGKITKADLLTTYAADLTTKIRAGITDAEDKLKPLQGSHIIVDAGNGAGGFFAEQVLAELGADISGSQFLEPDGNFPNHIPNPDNEAAMASLKTAVLASGADLGVIFDTDVDRAAIMDKHGESLNRNPLIAVISSIILEEKPGTTIVTDSTTSGHLEAFIEAKGGKQHRFKRGYRNVINEALRLNREGTPSEIAIEVSGHAALKENYFLDDGAYLIAKILMIYASLRKNGQDLPDLIANLKEPAESEEIRLSITASDFKTYGQEVLTDFRKFVEADADMSLEPINQEGIRVNTSGELGEGWFLLRMSLHEPVMPMNLESDEVGGIQKVKDRLAGFFATKANLEI
>NC_013891.1|WP_012986007.1|1908423_1909299_-|methyltransferase-domain-containing-protein
MLSKMEINKQAIIQNISLLACPICAGPFHFEEPNGFICSENHQFDVAKPGYLHLLKQAHKTKYDQALFESRKKVIASGFFEPLMKRVAEIITTSTAEELVVYDAGCGEGSHLAHVVQSLQNNGKKVHAAGLDIAKEGVKQAARDYPGIVWEVADLANCPNQTGTADVILNILSPSNYEEFKRLLLDEGFLLKVVPEANYLRELREFIYLDEKSTYSNDSVTSRLAERLTVENVEQITYMAPIAKDLFADFLEMTPLGWHISEEKKAELLINPPEALTVDLQIIIAKKRNVS
>NC_013891.1|WP_012986008.1|1909351_1909837_-|dihydrofolate-reductase
MIIFIWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDTSLQLADADVIHSRDEVLALAKEQDEAIYIAGGAEIYRLFMDVADKLIVTKIDATFEADTAFPEVDWENFTEVSREPHDKDEKNKYGYTFYTYERN
>NC_013891.1|WP_012986009.1|1909849_1910794_-|thymidylate-synthase
MKQYLDLEKYVLENGTQKGDRTGTGTISTFGYQMRFNLQDGFPIMTTKRVPFKLVVSELLWFLHGDTNIRYLLQHKNNIWNEWAFERFVKSADYKGEDMTNFGLRAESDPAFKEVYQAEMESFKIRILEDADFAKKYGELGNIYGKQWREWKTSQGETIDQLADVIELIKTNPNSRRLIVSAWNPEDVPNMALPPCHTLFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTHLIARETGLDVGEFVHTMGDAHLYNNHIEQVKEQLSRTPHALPKLVLSDKPATIFDFDVADISLDGYNPDASIKAPISV
>NC_013891.1|WP_012986010.1|1910806_1912699_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTVTKAKDYTIGYLAQDPVFNEEDTVLSAVFDGDTAALRAMRKYEEVLLAMSLDSENTKLHDAYTAASQEMDASAAWDMNTDAKTILERLGITDLTAKISELSGGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNYEKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVITGQTVQIGYYTQQNEEMDPDMRMIAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVLEDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLAEFEAKGKPAKSMKKMANTSAEKPAPEKKEKVKLTYQEQLEWDGIEEAISKLELELESLNKTLEQTGADFTKAADISENITAKEVELEQMMERWEFLSQYAE
>NC_013891.1|WP_012986011.1|1912820_1914503_-|formate--tetrahydrofolate-ligase
MSNKVKSDIEIASNAEILPVTTIAEQLGLDADALELYGKYKAKLSYDTIHSLTDKQPGNLVLVTAINPTPAGEGKSTVTVGLGDALSRKNKKTVIALREPSLGPTMGIKGGATGGGFAQVIPMEDINLHFTGDFHAITAANNALSAFIDNHMQQGNDLEIDGRRIVWKRVVDLNDRALRKVVVGLGGPIQGVPREDGFDITVASEIMAIICLASDLKDLKKRLSEIVIGYNYKKEPITVGEMGYEGALTLLLKDALKPNLVQTLEHTPAIVHGGPFANIAHGCNSVSATSTALKLGDYVVTEAGFGADLGAEKFLDIKVPVLGKAPDCVVIVATIRALKMHGGALKTELSEENVDALAKGFTNLQKHTESIETFGIPYVVAINKFITDSDAEVAKLEALCKEHEIPFSLTEVWEKGGAGGLELADKVIAAVEGGTANYKRIYEDAWSIEEKLDAIVTKVYGGIGVELSNKAQKQIVDFKKYGWDRYPICMAKTQYSLSDDPTKLGRPTDFVIHIREFIPKLGAGFVVALTGDVMTMPGLPKKPAALNMDVDEKGNAKGLF

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Crispr_ID: NC_013891_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013891_6

1902822-1902970

Orphan

Consensus_repeat	Method
ATTGATTGTTAGAACAATAAAGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_013891_6

>merge|NC_013891|6|1902822-1902970|CRISPRCasFinder
ACTCATTACCAGGACAATAAAGTGTAGTTAAATTCAGATTGTTTCCTAAAGCTATATCAGTTAATTGATTGTTAGAACAATAAAGTTTAATTAATGCTGTATTTTTACTTACATCTAAAGTTGTTATCTGATTGTTAGAACAATAAAGT

>NC_013891|6|6|1902822-1902970|CRISPRCasFinder
ACTCATTACCAGGACAATAAAGT	GTAGTTAAATTCAGATTGTTTCCTAAAGCTATATCAGTTA
ATTGATTGTTAGAACAATAAAGT	TTAATTAATGCTGTATTTTTACTTACATCTAAAGTTGTTA
TCTGATTGTTAGAACAATAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_013891.1\|WP_012986002.1\|1904623_1905001_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NC_013891.1\|WP_012985996.1\|1896014_1896647_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NC_013891.1\|WP_012986006.1\|1906845_1908357_-\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|215211
NC_013891.1\|WP_012985999.1\|1901082_1901391_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NC_013891.1\|WP_012985997.1\|1897408_1898221_+\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NC_013891.1\|WP_012986011.1\|1912820_1914503_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NC_013891.1\|WP_012986009.1\|1909849_1910794_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|213790
NC_013891.1\|WP_012986004.1\|1906084_1906708_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NC_013891.1\|WP_003752951.1\|1892987_1893521_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|237597
NC_013891.1\|WP_012986001.1\|1903727_1904606_-\|PhzF-family-phenazine-biosynthesis-isomerase	unknown	unknown	gnl\|CDD\|129739
NC_013891.1\|WP_003748500.1\|1893560_1894175_-\|DUF2140-family-protein	unknown	unknown	gnl\|CDD\|227042
NC_013891.1\|WP_012985993.1\|1892543_1892981_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NC_013891.1\|WP_012986003.1\|1904997_1905990_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NC_013891.1\|WP_012985995.1\|1894990_1895830_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NC_013891.1\|WP_012985994.1\|1894190_1894976_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|239947
NC_013891.1\|WP_012985998.1\|1898240_1900880_+\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_013891.1\|WP_012986010.1\|1910806_1912699_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_013891.1\|WP_003748506.1\|1896766_1897396_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|341387
NC_013891.1\|WP_012986008.1\|1909351_1909837_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NC_013891.1\|WP_012986007.1\|1908423_1909299_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841

Protein	Function_ID	Function_description	E-value
NC_013891.1\|WP_012986002.1\|1904623_1905001_-\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.79371e-46
NC_013891.1\|WP_012985996.1\|1896014_1896647_+\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	2.15755e-69
NC_013891.1\|WP_012986006.1\|1906845_1908357_-\|phosphoglucomutase	gnl\|CDD\|215211	PLN02371, PLN02371, phosphoglucosamine mutase family protein.	0
NC_013891.1\|WP_012985999.1\|1901082_1901391_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	7.88827e-18
NC_013891.1\|WP_012985997.1\|1897408_1898221_+\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	6.40357e-128
NC_013891.1\|WP_012986011.1\|1912820_1914503_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NC_013891.1\|WP_012986009.1\|1909849_1910794_-\|thymidylate-synthase	gnl\|CDD\|213790	TIGR03284, thym_sym, thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NC_013891.1\|WP_012986004.1\|1906084_1906708_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.51861e-46
NC_013891.1\|WP_003752951.1\|1892987_1893521_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	3.17352e-96
NC_013891.1\|WP_012986001.1\|1903727_1904606_-\|PhzF-family-phenazine-biosynthesis-isomerase	gnl\|CDD\|129739	TIGR00654, Uncharacterized_isomerase_YddE, phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear. [Cellular processes, Toxin production and resistance].	3.21173e-71
NC_013891.1\|WP_003748500.1\|1893560_1894175_-\|DUF2140-family-protein	gnl\|CDD\|227042	COG4698, COG4698, Uncharacterized protein conserved in bacteria [Function unknown].	3.07515e-74
NC_013891.1\|WP_012985993.1\|1892543_1892981_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.21049e-90
NC_013891.1\|WP_012986003.1\|1904997_1905990_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.18726e-101
NC_013891.1\|WP_012985995.1\|1894990_1895830_-\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	3.22047e-114
NC_013891.1\|WP_012985994.1\|1894190_1894976_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|239947	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	3.59847e-86
NC_013891.1\|WP_012985998.1\|1898240_1900880_+\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_013891.1\|WP_012986010.1\|1910806_1912699_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NC_013891.1\|WP_003748506.1\|1896766_1897396_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|341387	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.29946e-62
NC_013891.1\|WP_012986008.1\|1909351_1909837_-\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	1.34881e-91
NC_013891.1\|WP_012986007.1\|1908423_1909299_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	3.3984e-41

>NC_013891.1|WP_012985999.1|1901082_1901391_+|carboxymuconolactone-decarboxylase-family-protein
MKVSKSFEVFAKEAPEVQAAWMETVQKLDAASKLDKKTEELAYIAVMAAVRLESGIPFHVKMAKSNGATRDEIISAILVGLPAVGNIVTTSLPAAIEAYDEE
>NC_013891.1|WP_012985998.1|1898240_1900880_+|pyruvate,-phosphate-dikinase
MRKFVYQFSEGSKEMKNLLGGKGANLAEMTNIGLPVPPGFIISTAACNDYTNSNKHLSEDIFEEVKIHLAELERQTGNIFGFKDNPLLVSVRSGAPFSMPGMMDTVLNLGLNDATAKGLASLTNDSRSALDSYRRFIQMFGDVVFEIPSYHFEQALTQIKKTNNYLLDTELTAEDLSELVATYKTIFTQATGQNFPQEPLEQLRLAIIAVFNSWMNPRAVIYRRLNNIDASFGTAVNIQAMVFGNTGETSGTGITFTRNPSTGEKAIFGEFLLNAQGEDVVAGIRTPEPIKALEERMPIVYNELIKTCELLENHYLDMQDIEFTIEKEKLFILQTRSGKRTAKAAIQVAVDLVHEGKITKAEALMRVETKQLDQLLHPTFVESALKVGQVLATGLPASPGAATGQIYFTAKEAVQAAERGISVILVRNETSPEDIEGMAKSDAILTAHGGMTSHAAVVARGMGKCCIAGCSELIINEKEKTIILKNGTQLHEGEQISLNGTSGKVYLGEIELTEAAIGGHFDELMTWADEEKQLMIRVNADTPADFKKALLLGAEGIGLCRTEHMFFDEKRIPYVRQMILAESLAERESVLTTLKEMQKEDFTALFRIADGRAVNIRLLDPPLHEFLPTTNREIEQLASEMNRTVPQLTKRIHSLAETNPMLGHRGSRLAITFPEIYRMQAEAIIESAVIVHDEGIAVHPEIMIPLIATKSELKYIKKEIKHAIHSIFDKERVVLPYDIGTMIEIPRACVTADEIAEEAQFFSFGTNDLTQLTYGFSRDDAAKFLSDYYEKNILPNDPFVTIDKEGVGALVEMAVTRGRMTHANLKMGVCGEHGGDPESIRFFHQLGLSYVSCSPYRVPIARLAAAQASLHEKKMLTTV
>NC_013891.1|WP_012985997.1|1897408_1898221_+|kinase/pyrophosphorylase
MENPVIIYVISDAIGETAQHIIRAVTAQFSFQKPADIRRHAFIRDEKALLETLEEAKEADGIVVQTLVQAKLAEYATDFCSNNHIPNIDLLHTLTTAIETKTGLKSKQDPGNMRRLDSNYFDRIAAIEFAVKYDDCKDPRGLIDADIVLVGVSRTSKTPLSSFLANQNWKVANVPLVPEIPIPDELFQIPQERIIGLTTTPDKLAQIRKVRLKSIGLDEASSYSSEKRILEELEYGYTTFKKLGCQVIHVEDKAIEETAALITEIITSYH
>NC_013891.1|WP_003748506.1|1896766_1897396_+|helix-turn-helix-transcriptional-regulator
MIPIELSSRQHQIVAYVRANEPATGDSIAAHLKLTRATIRADLSILTMTGILDARPKVGYFYSGLETNPIHFDEIRQLKVSDIMTQPFFAKKETSVYDAIVMLFMEDIGSLYVIDEEELVGLVSRKDLLKGALADADTKATPIATIMTRMPNLITVTKNDKVLHAAEQLVFHQIDSLPVLETKAGKTKVVGKISKTRITALFVDTIKKV
>NC_013891.1|WP_012985996.1|1896014_1896647_+|hemolysin-III-family-protein
MNVTSYNWKEELANAITHGIGFILSIPALVLLIVFAVQKDNPLYLTSFLVYGISLMLLYVCSTLLHSFKPCKARTVFNIMDHAAIYVLIAGSYTPFVLITIQGTLGWTLFGIIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYTGLTPAGFWLLATGGIMFTVGAIFYSIPKVPYMHAIWHLFVIAGTAFMYFCILFYV
>NC_013891.1|WP_012985995.1|1894990_1895830_-|DegV-family-protein
MRKIKIITDSTAGLTQEEAAKWNIDILYLTVEIDGKVYNPKTDITPEGFMDRMAETKELPKSSQPAIGSFVEAYEKYTAEGYEILSIHLTEKLSGTVNAARQAADMVEGNITVVDSDYTARGQAFQVLAAAEMAQSGDFSVEEIHAKINDIRDKTKLYIVVVTLDNLIKGGRVGRMQGFLGSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLVKDEPKKIQHLDVVHANGLNLADEFISETKEITGLTEIPLFFADPVISTHAGAGAFAFMYYTD
>NC_013891.1|WP_012985994.1|1894190_1894976_-|SGNH/GDSL-hydrolase-family-protein
MTKKKWLWLTGSVLVIALLVGAVFGIKYYREAQEVPVKLVAMGDSLTEGVGDEDKNGGYVGIIPDKLEEESNVPSVKTSNYGVSGNKITQLEKRLKTNKTFQQDVKNANVITITIGGNDVMAILQSRLLDVDVADFTKANKNFQQELENLLTDIRSYNKNAAVFLMGIYNPYTTYFSDIKEFDEVIANWNKASEKTVQKYDNVYFVPIAKVLENRDKSNKDKPNPLLSDDYFHPNHQGYEKISTELDKAIVKQLNEGNIPK
>NC_013891.1|WP_003748500.1|1893560_1894175_-|DUF2140-family-protein
MQNETRSAPKKPKRNYWKWICIILISLIVILAGWIYVAVFVSSPQTEPTPTLISNKEAVEFQTSTTKADLNQLISTYIDEFSKDQDIGYQVFVANNVNFTAEAKIFDQPVELHLKFSPKVVDDGNVELTLKDMSVGALPLPVSYVMSYVNKNYEFPDWVTISPKKEKIYLALDKLKLKGDTKVRVDTLDLKKDDISFTLLVPVN
>NC_013891.1|WP_003752951.1|1892987_1893521_-|peptide-methionine-(S)-S-oxide-reductase-MsrA
MTNKSLEKATFAGGCFWCMVKPFDTQPGIERVVSGYTGGHTVNPTYEEVCSGTTGHTEAIEITFDPAIFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVIFYHNEEQKEIAEKSKAALDASGKFKKPIVTEIAKAETFYPAEEYHQDFYKKEKAHYEGYQVASGRAAFIDANWKG
>NC_013891.1|WP_012985993.1|1892543_1892981_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MDENQKNERLKQLTDLQYNVTQKAGTEHPFKNEFYDNEAEGIYVDIVSGKPLFSSKDQYDAGCGWPSFTKPIDDQEIIENKDRTHGMIRIEVKSVDADSHLGHVFPDGPTDKGGLRYCINSAALRFIPVDKLEEEGYQAYQQIFE
>NC_013891.1|WP_012986001.1|1903727_1904606_-|PhzF-family-phenazine-biosynthesis-isomerase
MRCAVLRVDAFTTIPGQGNPAGVVLAGDTYSTDEMQKIAKKVGFNETVFICKSGLAAMKLRYFTPGFETPLCGHATMGAIFALLNGNDDQQLEIETGAGVLQINYEAKNPKITMHQATPKFINFNGDKEALCHSMNIKIEDLHPELPIQYGNTGSWTLILPVKNEQVLDQMKPDAAQFPIILKEIPKSSVHPFAIISEEESIFSARHFSSPFAETKEDSVTGTASGVMGAYSLNHIYLEEEIKDITVYQGRHVNREGRVFVHIEKDKIGAQEVSISGTACFNGKFEVEIEET
>NC_013891.1|WP_012986002.1|1904623_1905001_-|VOC-family-protein
MIKKIGQVMLYVEDQAAVRDFWVEKLDFVVVSEEVVNGEIQWIEIAPTKDVGTTFVLQNKKKVAEMNPDMNLGTPSILLFGENIAELYEEYKNKGITVGELVDLPMGRVFNFADNEGNYFAICEK
>NC_013891.1|WP_012986003.1|1904997_1905990_-|aromatic-acid-exporter-family-protein
MRIGMRTVKTAIAATLAIILAEWLHLEYAVSAGIIAILSVQNTKKGSLQLAIQRVYSTVLALSIAAIFFLLLGYNAVSFGLYLLIFIPLAVKLHVADGIVVSSVLVSHILLEQSLSFFWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQKIEAIMRQILTEMTQGLRNQSEYHDEAGLLHQLKGTLDYAQEKAARNLDNQFFASSHYYSQYVDMRLVQYRILTQMKRHLVAFHHSSEQSMALAEITEKTAQTLDEHNTAEDLVAEITKMVHEFRSSKLPETRAEFENRATLFQFMNDLRYLLEMKRDFYAEFGLQEKMKIREGDKG
>NC_013891.1|WP_012986004.1|1906084_1906708_-|DedA-family-protein
METWITSIMADFGYIGIFLLIMVENLFPPIPSEIILTFGGFMTTVSSLNVVMVIIVATLGSVVGAILLYKVASYFGKERLTKIVLKHGRILRLKESDIERAENFFLKYGSWAVFLCRMIPLIRSLISIPAGMTQMKMSRFLVLTTAGSLLWNTILIGLGAFLGESWNEIVVFMDSFSTIIYGIIAVIVVVGLGFFFRVRFKKTLDEE
>NC_013891.1|WP_012986006.1|1906845_1908357_-|phosphoglucomutase
MNQSETKALEALQNGSDIRGIAIATEKNQITLTDERVEKIAYGFAKWLKEEKQVEGQAKVAIGHDSRLSAERLKAALIKGLVFADIDVVDVGLATTPAMFMATQYEGYNCDAGIMITASHLPFMYNGLKLFTKSGGAEHEDIDYIVAHADASFIENGTNSGKITKADLLTTYAADLTTKIRAGITDAEDKLKPLQGSHIIVDAGNGAGGFFAEQVLAELGADISGSQFLEPDGNFPNHIPNPDNEAAMASLKTAVLASGADLGVIFDTDVDRAAIMDKHGESLNRNPLIAVISSIILEEKPGTTIVTDSTTSGHLEAFIEAKGGKQHRFKRGYRNVINEALRLNREGTPSEIAIEVSGHAALKENYFLDDGAYLIAKILMIYASLRKNGQDLPDLIANLKEPAESEEIRLSITASDFKTYGQEVLTDFRKFVEADADMSLEPINQEGIRVNTSGELGEGWFLLRMSLHEPVMPMNLESDEVGGIQKVKDRLAGFFATKANLEI
>NC_013891.1|WP_012986007.1|1908423_1909299_-|methyltransferase-domain-containing-protein
MLSKMEINKQAIIQNISLLACPICAGPFHFEEPNGFICSENHQFDVAKPGYLHLLKQAHKTKYDQALFESRKKVIASGFFEPLMKRVAEIITTSTAEELVVYDAGCGEGSHLAHVVQSLQNNGKKVHAAGLDIAKEGVKQAARDYPGIVWEVADLANCPNQTGTADVILNILSPSNYEEFKRLLLDEGFLLKVVPEANYLRELREFIYLDEKSTYSNDSVTSRLAERLTVENVEQITYMAPIAKDLFADFLEMTPLGWHISEEKKAELLINPPEALTVDLQIIIAKKRNVS
>NC_013891.1|WP_012986008.1|1909351_1909837_-|dihydrofolate-reductase
MIIFIWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDTSLQLADADVIHSRDEVLALAKEQDEAIYIAGGAEIYRLFMDVADKLIVTKIDATFEADTAFPEVDWENFTEVSREPHDKDEKNKYGYTFYTYERN
>NC_013891.1|WP_012986009.1|1909849_1910794_-|thymidylate-synthase
MKQYLDLEKYVLENGTQKGDRTGTGTISTFGYQMRFNLQDGFPIMTTKRVPFKLVVSELLWFLHGDTNIRYLLQHKNNIWNEWAFERFVKSADYKGEDMTNFGLRAESDPAFKEVYQAEMESFKIRILEDADFAKKYGELGNIYGKQWREWKTSQGETIDQLADVIELIKTNPNSRRLIVSAWNPEDVPNMALPPCHTLFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLTHLIARETGLDVGEFVHTMGDAHLYNNHIEQVKEQLSRTPHALPKLVLSDKPATIFDFDVADISLDGYNPDASIKAPISV
>NC_013891.1|WP_012986010.1|1910806_1912699_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTVTKAKDYTIGYLAQDPVFNEEDTVLSAVFDGDTAALRAMRKYEEVLLAMSLDSENTKLHDAYTAASQEMDASAAWDMNTDAKTILERLGITDLTAKISELSGGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNYEKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVITGQTVQIGYYTQQNEEMDPDMRMIAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVLEDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLAEFEAKGKPAKSMKKMANTSAEKPAPEKKEKVKLTYQEQLEWDGIEEAISKLELELESLNKTLEQTGADFTKAADISENITAKEVELEQMMERWEFLSQYAE
>NC_013891.1|WP_012986011.1|1912820_1914503_-|formate--tetrahydrofolate-ligase
MSNKVKSDIEIASNAEILPVTTIAEQLGLDADALELYGKYKAKLSYDTIHSLTDKQPGNLVLVTAINPTPAGEGKSTVTVGLGDALSRKNKKTVIALREPSLGPTMGIKGGATGGGFAQVIPMEDINLHFTGDFHAITAANNALSAFIDNHMQQGNDLEIDGRRIVWKRVVDLNDRALRKVVVGLGGPIQGVPREDGFDITVASEIMAIICLASDLKDLKKRLSEIVIGYNYKKEPITVGEMGYEGALTLLLKDALKPNLVQTLEHTPAIVHGGPFANIAHGCNSVSATSTALKLGDYVVTEAGFGADLGAEKFLDIKVPVLGKAPDCVVIVATIRALKMHGGALKTELSEENVDALAKGFTNLQKHTESIETFGIPYVVAINKFITDSDAEVAKLEALCKEHEIPFSLTEVWEKGGAGGLELADKVIAAVEGGTANYKRIYEDAWSIEEKLDAIVTKVYGGIGVELSNKAQKQIVDFKKYGWDRYPICMAKTQYSLSDDPTKLGRPTDFVIHIREFIPKLGAGFVVALTGDVMTMPGLPKKPAALNMDVDEKGNAKGLF

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Crispr_ID: NC_013891_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_013891_7

2676708-2676931

Orphan

Consensus_repeat	Method
TCAGCTAATGCACTAATATCACTTAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_013891_7

>merge|NC_013891|7|2676708-2676931|CRISPRCasFinder
TCAGCTAATGCACTAATATCACTTATTTGATTGACGTCCAAATATAGATAATTTAAGTTAGTTAATTCAGATAATGCACTAATATCACTTATATGGTTATCAGTCAAAGTTAGCTCTGTTAAATTAGATAACTCCGATAAAGAACTTATATCCTTTATTTCATTCATACTCACATCTAATAACTTCAGCTTTTTTAAGTTGGCTATCGGGGTAATATCACTTAC

>NC_013891|7|7|2676708-2676931|CRISPRCasFinder
TCAGCTAATGCACTAATATCACTTAT	TTGATTGACGTCCAAATATAGATAATTTAAGTTAGTTAAT
TCAGATAATGCACTAATATCACTTAT	ATGGTTATCAGTCAAAGTTAGCTCTGTTAAATTAGATAAC
TCCGATAAAGAACTTATATCCTTTAT	TTCATTCATACTCACATCTAATAACTTCAGCTTTTTTAAG
TTGGCTATCGGGGTAATATCACTTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_013891.1\|WP_148213662.1\|2681444_2683487_-\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|269879
NC_013891.1\|WP_012986539.1\|2663920_2664547_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NC_013891.1\|WP_003721021.1\|2685557_2686277_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NC_013891.1\|WP_003754041.1\|2679297_2680707_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NC_013891.1\|WP_012986542.1\|2667775_2668150_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|184702
NC_013891.1\|WP_012986545.1\|2674866_2675706_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_013891.1\|WP_012986552.1\|2686633_2687230_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_013891.1\|WP_012986548.1\|2680703_2681441_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223635
NC_013891.1\|WP_012986540.1\|2664600_2665980_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NC_013891.1\|WP_003754033.1\|2667174_2667771_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NC_013891.1\|WP_003749857.1\|2678987_2679305_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NC_013891.1\|WP_003754045.1\|2686376_2686619_-\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NC_013891.1\|WP_012986547.1\|2678103_2678946_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
NC_013891.1\|WP_012986538.1\|2661402_2663391_+\|1,4-beta-N-acetylmuramoylhydrolase	unknown	unknown	gnl\|CDD\|180536
NC_013891.1\|WP_012986550.1\|2683729_2685082_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NC_013891.1\|WP_012986543.1\|2668293_2673693_-\|LapB-repeat-containing-protein	unknown	unknown	gnl\|CDD\|215061
NC_013891.1\|WP_012986551.1\|2685107_2685404_-\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|99906
NC_013891.1\|WP_012986541.1\|2666164_2667154_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NC_013891.1\|WP_012986544.1\|2673899_2674751_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_013891.1\|WP_003749839.1\|2663483_2663813_-\|cyclic-di-AMP-receptor	unknown	unknown	gnl\|CDD\|283747

Protein	Function_ID	Function_description	E-value
NC_013891.1\|WP_148213662.1\|2681444_2683487_-\|alpha-xylosidase	gnl\|CDD\|269879	cd06593, GH31_xylosidase_YicI, alpha-xylosidase YicI-like. YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.	7.9962e-159
NC_013891.1\|WP_012986539.1\|2663920_2664547_-\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	7.90093e-97
NC_013891.1\|WP_003721021.1\|2685557_2686277_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	5.47686e-70
NC_013891.1\|WP_003754041.1\|2679297_2680707_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NC_013891.1\|WP_012986542.1\|2667775_2668150_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	5.95365e-50
NC_013891.1\|WP_012986545.1\|2674866_2675706_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.43438e-82
NC_013891.1\|WP_012986552.1\|2686633_2687230_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.36303e-129
NC_013891.1\|WP_012986548.1\|2680703_2681441_-\|HAD-family-phosphatase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	9.48148e-32
NC_013891.1\|WP_012986540.1\|2664600_2665980_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	1.73291e-146
NC_013891.1\|WP_003754033.1\|2667174_2667771_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	3.70944e-83
NC_013891.1\|WP_003749857.1\|2678987_2679305_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	1.69267e-28
NC_013891.1\|WP_003754045.1\|2686376_2686619_-\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	1.87825e-14
NC_013891.1\|WP_012986547.1\|2678103_2678946_+\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	4.32677e-131
NC_013891.1\|WP_012986538.1\|2661402_2663391_+\|1,4-beta-N-acetylmuramoylhydrolase	gnl\|CDD\|180536	PRK06347, PRK06347, 1,4-beta-N-acetylmuramoylhydrolase.	0
NC_013891.1\|WP_012986550.1\|2683729_2685082_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	1.78179e-76
NC_013891.1\|WP_012986543.1\|2668293_2673693_-\|LapB-repeat-containing-protein	gnl\|CDD\|215061	PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional.	8.04572e-08
NC_013891.1\|WP_012986551.1\|2685107_2685404_-\|transcription-antiterminator	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	5.27746e-27
NC_013891.1\|WP_012986541.1\|2666164_2667154_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NC_013891.1\|WP_012986544.1\|2673899_2674751_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.19749e-57
NC_013891.1\|WP_003749839.1\|2663483_2663813_-\|cyclic-di-AMP-receptor	gnl\|CDD\|283747	pfam06153, CdAMP_rec, Cyclic-di-AMP receptor. CdAMP is a family of bacterial cyclic-di-AMP receptor proteins. Cyclic-di-AMP (c-di-AMP) is a bacterial secondary messenger involved in various processes, including sensing of DNA-integrity, cell wall metabolism and potassium transport. CdAMP_rec has a ferredoxin-like fold and is structurally related to Pii-signal transduction proteins.	3.76492e-67

>NC_013891.1|WP_012986545.1|2674866_2675706_+|Cof-type-HAD-IIB-family-hydrolase
MTIEAIILDIDGTLLSDNKEITPNTKKALITAQQNGVKLILASGRPTTAMHLYAEQLEMEKYHGLIVSYNGAKVIDCQTNEELFSQALTVAEGKAVLEHMKQFDVKVMIDKDDYMYVNNVYNCFVPYRGEEINIIEYESRGGNFKLCEKDDLADFLDYPISKILTAGDPTYLQENYQAMMTPFKDSLNCVFTADFYFEFTAQGIDKAKALDTVLKPMGIKAENLIAFGDGHNDITMVRYAGTGVAMQNAVPELKEAANTITLSNNEDGIAHLLDSLILS
>NC_013891.1|WP_012986544.1|2673899_2674751_+|MurR/RpiR-family-transcriptional-regulator
MNILIKIRELANLTNSEKELADYILANPRKTLQSRPKELATAAFVSTATIYRLINKLGLNGVGELKIEIASSLRETTEEKEINYDYPILESDTPYQIMTNLNQIYKGTLDETLSNADPEELVRIGEKLINAKIIDVYAASANLFFAQNFRFQMQEIGILINVPEEDYIQRLSAANSDKNHVALVISYGGRSETLQKAVKILSESNTPIILITSMQENALAEFATHKIYMASAENHYNKVSSFSTRQSLLSILDTIYSIIFNYNYDKNIHYKTNNYQKMNNDLI
>NC_013891.1|WP_012986543.1|2668293_2673693_-|LapB-repeat-containing-protein
MENKSKKQLKVNRKLNKLKSGLILSTSLVMLVPSSPIPVLATEVLEDKENENTTPAEETALSTKEKNTEEAVTEIGESHEEAGVPKEETEKLTEKKTVKDSGNSTIIPESAWEGANWLTTLAAEKVGKPANELTYEDLTTITSLNYTSPANTYVRLPGIIGSFSNLTTLKVSGLEGAIPAELANISTLSELTLNKGRLTGIIPSQIQRMESLTQIDFSDNALSGNYDNMDAIFQSKVTSASLANNFLDNTDGQQSISFKSGNEIESIDLNKETVILNSDGSENAEKKTRVNNNLQYATSNGSVISGERGNYTLAVKNEEAFTLNIGIERASSGQAFFSTEITPDIKPKIVVGKKTAPEFQGVPTPEEIIAAFEVRAYDNKDGDITSQITVSGLDNIDGSVSGSYNVELTATDSDGNTSDTQTITVAVVAEDTIPFELWQVTVNENGAITGGAGSNFSKEALKQVNAGTGVDKTISQLTPADVDDITSIRFSGNTYSSGGAIPKAVGEFKNLESLTITSLGHGDLPNEMKGLTKLKTLSINGSTNQSGSDLSDPNNVIETLTGLQNLTVAETTGKFDITKYPTNLTNLKSLKFQNTGGWQYPIKVTGNTSGFESFTELTDLELTGNLTGLTIDDHFNEMPAIKNLKISSEEPSSSKTNFKGEITSDITRLTTLTTLTLNGLSEYASGTLPAYFGEIPNLTSLNLAGNGFVGEIPASYDHLSTLNLNKNYLTGDYDALNKSSTRTFYGNLYDNAPASANQSEILVTRNSVSNNNWILGEPADYTVSFAGIEKDYHQKYMKSMYQVESMDANTNATITGTNTVKINPLATGDSDFKVSIINSPETLETNTMSQKIIQGTVVDSLPEIHYDANKLNIALQKGTTAPTVSELMEQMGITSTMGDEDVSQYTEVSGVTEFSDMDMTATNTSGYEFTLTATTASGVEGSSVKVRVFITDTNPETVIPVSSWEEQQPLIDKVTSYTGKSIEEVTYQDIVNLTTLDLSNSGMTKFPAVFGEFLSLTNLNISNNYDLVGTIPDSIGNLKALQIFKIYNTAISGQIPDSVLALTKLKEAHIDNTFINDKTSNFSSVFNNAINQYNDDYYEKSFLIGSSSSWKLQAGTTKSFNIGEEVDLFADDVVEANFSGTLLGESATRTKFSKYMNIEILQGNAQVVKDADGLQKIHTNGEGSITARVTVPNADVASLLSENANTTLIVNFNVKDANAPVITTARESVEVTTGSNLLTTNNFISLFGISVYDEADGNLTYAANTTYIPEFINELGEYRVVIDTIDYSGNEASKTVELLDKSKPVIGAAISSQNVSLENASSTLSDAEIIELFGVTAKDNMDSNIADSLTVSGEENYNRAVGTYQFTVTARDESGNESSRALVLNVTDEGTPEINVDASKLTYELGGEPLSETSTPEEFTAYIGLTMTDNVSSEETLRANLIVDGFDEIDFTTAGEYPITLSTSDESGNEANLDVNFTIEDTVVPVLGVDNQRISQSFGEDYAFTSESLVEAAGININDADAKASYTIDEADLEALNTAIQSNDLTNAGEYSVEVTAKDSSGNVSIPVTVVVNVQDTKAPVLEADLSHSLVQYTTLPTADEIKESIHATVTDKVDKELSVADIQVTDLDSIDMEVAGTSTIKLSVVDGSGNESERTVEIEVQADTDKDGIPDSDEKDEGTDPLNPDNDPDGDDVPDGDDKDGNGKPDGDDKNPLNPEDNPNGGDNTPLNPENNPNTQGDQANTSGANKEPSTKTTQIELPATGDDTSATTTLFGGIMALLGTIWIKRHSKKEKTVTTKK
>NC_013891.1|WP_012986542.1|2667775_2668150_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MTKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIEKNEADKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQIQMDEKPEVIAANLKTIEIK
>NC_013891.1|WP_003754033.1|2667174_2667771_+|dihydroxyacetone-kinase-subunit-L
MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMARGLSELKKAFADKEPTDLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVESETIDSVGLTKVIEAGLEGIEKRGKSHAGEKTMIDVWEPVVHALHQEDLTDDVVDAALQKTKDLKATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVN
>NC_013891.1|WP_012986541.1|2666164_2667154_+|dihydroxyacetone-kinase-subunit-DhaK
MKKILNGTDQVVEQMVEGLVKSHADIVHRVEGTRVIARNDKRSGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADAEDIKVEQIVVDDDIAVVDSTFTTGRRGVAGTVLVHKIVGAAAEAGASLEELKALGEKVISAIKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSASLAKQLYDRIATESKLISGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVSVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVETIAW
>NC_013891.1|WP_012986540.1|2664600_2665980_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKDQSKMPLVEQLDAHARSCPISLHVPGHKGGAIYPDVWQKLLKWDVTEISGMDDLHHAEDVIKEAEELLAQCYGVKKSHFLVNGTTGGSLAVIMTTLRHGEKVLVPKDAHKSILHGIELAGGVPIFLTPETHEEIGVANGVSPELVEETLHKYPDVKLCIFTYPSYYGTIFNLQKCIQIAHDFGAVVFVDEAHGAHFLTSSEFPKSAVELGADIVVQSAHKTLPALTMGSYLHIVHDLPVFDKLAYYLQVFQTSSPSYLIMASLDAARKYVATYSDADVEAFWKMRARWIKWLTKNKFDVILPDDPLKIIVRKAGYTGYELQKIFEKSSYFPELADESQLLLILPLIKKGVDFTPISRIHSPEKKATAKNLYETVATEVTELALTYEEMHQRATDFVALDDATDQISAETISLYPPGIPAVVRGERLTEKHIHDLKKIRNHHYQGGEKLATSYIRVFK
>NC_013891.1|WP_012986539.1|2663920_2664547_-|dTMP-kinase
MKAIFITLEGPDGSGKTTVGTMLTKKMEEAGVDFIKTREPGGSPISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALEAGKTVLCDRFMDSSLAYQGAGRDMDMEQVLQVNLYAIEDTIPDRTYYLDVPAEVGLARIAANKGREINRLDKEDISYHEKVQAGYEKIMAMFPERYMRVDATKTPEEITDVILADILNNLN
>NC_013891.1|WP_003749839.1|2663483_2663813_-|cyclic-di-AMP-receptor
MKLIFAIVQDQDSNRLSDSLTKANFGATKLATTGGFLKAGNTTFIIGTEDERVEEALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGATVFVMPVENFHHF
>NC_013891.1|WP_012986538.1|2661402_2663391_+|1,4-beta-N-acetylmuramoylhydrolase
MQKTRKERILEALKDEKKNKKSKKFKTGATIAGVTAIATSITIPGIEVMVQADETAPADEASNNADAAAKTETETTTKTETNETKTTTETKTEVKTETKQQAEPTTKTAPVVEEKAAPKVETATISNADNLTSSSTPATYNNLQKTALRSGATVESFINTISASSSQIAADNDLYASVMIAQAILESAYGTSELGSAPNYNLFGIKGAYNGQSYTKQTLEDDGSGNYYTITAKFRKYPSYHQSLEDYASVIHNGPSWNPNYYSKVWKSNTTSYKDATKALTGTYATDTAYASKLNNLISTYNLTQYDSGKSSGGSSTGGSSSSSSSSVTYTVVKGDTLSKIASKYKVSVANLKSWNNLKSDTIYVGQKLKVSASSSSNSSNTSKPSTDTNNNSSSSSAKTYTVVKGDSLWKIATKYNVSVANLKSWNNLKSDNIYIGQKLKVSAGSSSSSSSTSKPNTNTNSNKDTSKPSTSTNAKTYTVVKGDSLWKIATKYNVSVANLKSWNNLKSDNIYIGQKLKVSAGSSSSTSKPSTNTNSNKDTSKPSTSSSAKTYTVVKGDSLWKIATKYNVSVANLKSWNNLKSDTINIGQKLKVSASSSSSKTSTSKTSTSKPSNSATKTHTVKKGDSLWSVSRQYNTTVDNIKSWNKLTSNTIYIGQKLTIK
>NC_013891.1|WP_012986547.1|2678103_2678946_+|aldo/keto-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEKRMRTALETAVDVGYRLFDTASFYHNEKQLGDFFQSSGLKRDDFFVTTKMWNTEQGYDKTLRAFEQSQKKLQLDQIDLYLVHWPKQDTFFETWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQVETHPHFPNHLLHRYLEELHVVHQAWSPLGRGGVLEETTLIELGEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIKENADIYDFELTEADMRQVDRLNTGERVSHAPDVMYVRSEI
>NC_013891.1|WP_003749857.1|2678987_2679305_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MNDKESQIAMELIFHSGNAKSTAMQAIMKAESDNIAEGKELIKQARKELHEAHAIQTNLMTAEINGEKVEKTILLIHAQDHFMAANLTIDLGERMINLHEKIVNK
>NC_013891.1|WP_003754041.1|2679297_2680707_-|glycoside-hydrolase-family-1-protein
MTKQIEFPKGFYWGSAASATQTEGAAHEGGKGENIWDYWYKTQPKRFYEKVGPEKASGFYYNFRSDIKLLRQTGHNSFRPSISWSRMFPNGFGEVNPEAVRFYNEVIDALIEEGVEPIMNLYHFDMPLAMQEIGGFENKEVVEHYVAYATTCFRLFGDRVKRWFTFNEPIVPVEGGYLYDFHYPNKVDPKAAAQVAFNTLLASAKAIESYHKISDGKIGIVLNLTPSYPRSDNPADVEAARIAEIFCNKSFLDPAVLGKFPEGLKEILAKHDCLPVYSKEELAIMEQNTVDFLGVNYYQPRRVCARETLPNPDAPFMPEYYFQNYEMPGRRMNIYKNWEIYEQALYDIAINIRDNYGNIEWMVSENGMGVKDERRFAKGDYIEDDYRIEFFEDHLYWLNKGILEGSNCIGYHVWTFIDNWSWMNAYCNRYGLVSLNLTTGNRTIKKSGEWFKALHDNNGFSYEGVLPYE
>NC_013891.1|WP_012986548.1|2680703_2681441_-|HAD-family-phosphatase
MIKKIFVTDLDGTLVTRNNEIELADLHAIRSWQQQGNLWVVATGRKWDSVVELLQRYDLAADALILENGALILASSGEIIWQKNIQPETAKLVTDFDLSLVEEVCLVTSFNQAAPQQLLNLDSFKETQVISAITLRYATVDLAEEYVNQVEALITDAVFRNMNYIDIAPNGCSKGAAVKFLMERLMLTKNEVSVIGDSFNDISMFEVSRYPFTLEHAEKAMHEQGALVVKNVHEAINKVRLEWDF
>NC_013891.1|WP_148213662.1|2681444_2683487_-|alpha-xylosidase
MEGAFEMEPFYLTEKAAIRNVPSFNREADKFVITSGKLTINIAKEPFRIEIKNENKVIFSTSIKKVSRQYVTPGLGHRIDANGYREAFLSWDVANDEKFYGLGEKFSSVEKSATRSTSYAMDACATNTTDLAYKAHPILLSTNGYGLLLTTAKRTHWDIGDFCFVSGTVLVEGPVLRGHIFVGDTLKDLIAEETEMQGHSEMIEPWTLGVWYSRCAYMNKEELYGVKDKLRELELPFDVLNIDVHWGKNYWYEKFWVDCCDFEWGEDKFPEPTKMFAEMMEQNVACSLWMNPYLPPGTAVYEEAVEKGYLVKTTEGGLAHIKRRQVSEIGIPDLTNPEAYNWWKEKVKDLLRLGIRVLKPDYTDRIPEDALFFNGYTGKDMHNAYIYLYIKACYDATQEIHGTSLVWKRPGFLGTGKFAGTWSGDVESSFEGLKYTIRGGLSVGFTGESYWSSDIAGFKGEKPSPELYIRWSQVGMLCSLARYHGTTEREPWFYGEQAVNIVRDYSELRYSLVPYMLEMATEAEDRGLPMMRHLALEFQNDAFVHAIDDEFLLGEDILVAPILEAGATKRDIYLPAGAWYDRKTGERYPGRSTITVDVTLEDIPIFIREGAVIPQFKRKLQHLKDFETEAVEICVYGKAKKMQGTLVSENRVRYAYTILADGSISTNYPGEVTLRQVYEA
>NC_013891.1|WP_012986550.1|2683729_2685082_-|PTS-sugar-transporter-subunit-IIC
MASEKLNKFQMKLTKIMGKIAGNKLLLSLRDTFIMAAAPLMIAGFAIMISSVFLDPTGIIFGNSGLHLGSLISGSEKAFLVSDFAEGLRTLQGYFNLFINGTMAINAILVVAGFAFFGSRRFFPKNKEPIVVTFYALAAFFITLPWTVTTLDTKGNEVTINGIVNSNFIGQQGIFTGLIVSGITIYVFNKLIQKNVTFKMPDTVPPAVAKSFESLVPGVVTLAIFVIVAGVLNGVFDTSLPEALLWLLQKPALAVAATPLFAVVAIVSTPILQWFGIHGTSVWGPIFGLTWNINDNENIMGTAQHLYSTLFMNFTVVSSGALTLAPIIAIIIFSKRADNKKIAKLAIAPGIFNVSEPVTYGLPIVLNPILFIPYLLSWVIPFFLGQLLTEIGLIPIITNNVPWTVPPILSGLLYSGSIMGALYQALVIVIVVILYMPFVRVANNLANKLD
>NC_013891.1|WP_012986551.1|2685107_2685404_-|transcription-antiterminator
MKISLFCNAGMSTSLVASKLKKAYLERGITYDIEAYDFSALQEEADEADVIILGPQIAWAFDDVKNDYPDKKVIQLTMVEFGSMDGEKVLERVEKELN
>NC_013891.1|WP_003721021.1|2685557_2686277_-|GntR-family-transcriptional-regulator
MSTKILKYETIAFDLRKKILSGFYKQNDQLPLEKEMCEEYDTSRITVKKAMDQLVLEGLVVKRRGAGTFVKDVENPDADVLQSMQFMGFSEENKHKNVSSDILKFEIINPDEATLNKLRISELDFVYHIIRVRKIDKKPHALEECFMPINLISGLRMDIVASSIYTYIESVLGFSIQSAHKTVSAVMPTDFEKEYLAIEDVTPILNIEQVAYLDNGQPFEYSNTKYRADKYEFHAINIR
>NC_013891.1|WP_003754045.1|2686376_2686619_-|YaaL-family-protein
MESRSNKFGRKKEKKIGKLHKSYDAYLMELIEVTQENWHKQKVLLRKSFEYDPNLEYEEKKAEARYFYLFKEARKRQLKK
>NC_013891.1|WP_012986552.1|2686633_2687230_-|recombination-protein-RecR
MHYPEPITKLMDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICVDTSRDRSIICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKITRIAHGLPVGGDLEYADEVTLSKAMEGRREV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_013891_2	2.2\|444019\|35\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	444019-444053	35	NC_011308	Listeria phage P40, complete genome	27302-27336	0	1.0
NC_013891_3	3.2\|454400\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454400-454436	37	NC_021539	Listeria phage LP-030-2, complete genome	17444-17480	0	1.0
NC_013891_2	2.1\|443954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	443954-443989	36	NC_011308	Listeria phage P40, complete genome	5678-5713	1	0.972
NC_013891_2	2.7\|444341\|38\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	444341-444378	38	NC_011308	Listeria phage P40, complete genome	28715-28752	1	0.974
NC_013891_2	2.11\|444598\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	444598-444633	36	NC_011308	Listeria phage P40, complete genome	10630-10665	1	0.972
NC_013891_3	3.2\|454400\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454400-454436	37	FW590615	JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME	3409-3445	1	0.973
NC_013891_3	3.2\|454400\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454400-454436	37	HI504184	Sequence 26 from Patent EP2147092	3409-3445	1	0.973
NC_013891_3	3.2\|454400\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454400-454436	37	AJ417489	bacteriophage U153 int gene for U153 integrase	3409-3445	1	0.973
NC_013891_3	3.2\|454400\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454400-454436	37	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	3512-3548	1	0.973
NC_013891_3	3.3\|454466\|34\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454466-454499	34	NC_011308	Listeria phage P40, complete genome	32006-32039	1	0.971
NC_013891_3	3.4\|454529\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454529-454565	37	NC_011308	Listeria phage P40, complete genome	34378-34414	1	0.973
NC_013891_3	3.2\|454400\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454400-454436	37	KJ094022	Listeria phage LP-030-3, complete genome	29408-29444	2	0.946
NC_013891_3	3.2\|454400\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454400-454436	37	AJ312240	Bacteriophage PSA complete genome	17635-17671	2	0.946
NC_013891_3	3.6\|454661\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454661-454697	37	NC_011308	Listeria phage P40, complete genome	17705-17741	2	0.946
NC_013891_3	3.8\|454792\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454792-454827	36	NC_011308	Listeria phage P40, complete genome	705-740	2	0.944
NC_013891_2	2.5\|444212\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	444212-444247	36	NC_011308	Listeria phage P40, complete genome	32519-32554	3	0.917
NC_013891_2	2.9\|444471\|35\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	444471-444505	35	NC_011308	Listeria phage P40, complete genome	29043-29077	3	0.914
NC_013891_1	1.4\|437574\|36\|NC_013891\|CRISPRCasFinder,CRT,PILER-CR	437574-437609	36	DQ003637	Listeria phage A500, complete genome	828-863	4	0.889
NC_013891_1	1.4\|437574\|36\|NC_013891\|CRISPRCasFinder,CRT,PILER-CR	437574-437609	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	871-906	5	0.861
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	140143-140171	5	0.828
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	36114-36142	5	0.828
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	109909-109937	5	0.828
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	KR131710	Fusobacterium phage Funu1, complete genome	21403-21431	5	0.828
NC_013891_3	3.3\|454466\|34\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454466-454499	34	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	232076-232109	6	0.824
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MH616883	Inoviridae sp. isolate ctbd3, complete genome	6051-6079	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP054442	Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-2, complete sequence	35797-35825	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP014058	Staphylococcus saprophyticus strain FDAARGOS_137 plasmid unnamed, complete sequence	525-553	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP014114	Staphylococcus saprophyticus strain FDAARGOS_168 plasmid unnamed1, complete sequence	4293-4321	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NC_016643	Staphylococcus saprophyticus subsp. saprophyticus plasmid pSSAP2, complete sequence	35797-35825	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP054435	Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-1, complete sequence	35797-35825	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP041688	Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence	7102-7130	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP054446	Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-2, complete sequence	35796-35824	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MK448464	Streptococcus satellite phage Javan387, complete genome	14441-14469	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MK448475	Streptococcus satellite phage Javan403, complete genome	14447-14475	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MN783745	Escherichia coli plasmid pFII-FIB, complete sequence	44181-44209	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	CP016195	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence	291190-291218	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MN693534	Marine virus AFVG_25M18, complete genome	39805-39833	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	104010-104038	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	104010-104038	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP007544	Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence	58135-58163	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	104010-104038	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MH319726	Marine virus AG-345-D19 Ga0172267_107 genomic sequence	7713-7741	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	KF929199	Staphylococcus phage vB_SepS_SEP9, complete genome	63936-63964	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	AP013551	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, * SEQUENCING IN PROGRESS *, 2 ordered pieces	19504-19532	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	AP013583	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S25-C129, * SEQUENCING IN PROGRESS *	11792-11820	6	0.793
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	AP013552	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23B-MedDCM-OCT-S39-C49, * SEQUENCING IN PROGRESS *, 7 ordered pieces	32376-32404	6	0.793
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024108	Bacillus cytotoxicus strain CH_15 plasmid pCh15_83, complete sequence	72987-73022	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024100	Bacillus cytotoxicus strain CH_38 plasmid pCh38_83, complete sequence	52289-52324	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024122	Bacillus cytotoxicus strain CH_1 plasmid pCh1_67, complete sequence	56262-56297	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024115	Bacillus cytotoxicus strain CH_3 plasmid pCh3_83, complete sequence	59952-59987	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024110	Bacillus cytotoxicus strain CH_13 plasmid pCh13_79, complete sequence	32108-32143	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024106	Bacillus cytotoxicus strain CH_23 plasmid pCh23_67, complete sequence	46870-46905	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024118	Bacillus cytotoxicus strain CH_2 plasmid pCh2_83, complete sequence	41962-41997	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024097	Bacillus cytotoxicus strain CH_39 plasmid pCh39_83, complete sequence	77147-77182	6	0.833
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024103	Bacillus cytotoxicus strain CH_25 plasmid pCh25_67, complete sequence	17052-17087	6	0.833
NC_013891_1	1.6\|437643\|32\|NC_013891\|PILER-CR	437643-437674	32	NZ_CP014116	Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed4	7256-7287	7	0.781
NC_013891_1	1.6\|437643\|32\|NC_013891\|PILER-CR	437643-437674	32	NZ_CP014117	Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed3, complete sequence	2536-2567	7	0.781
NC_013891_1	1.6\|437643\|32\|NC_013891\|PILER-CR	437643-437674	32	NZ_CP014120	Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed2, complete sequence	8585-8616	7	0.781
NC_013891_1	1.6\|437643\|32\|NC_013891\|PILER-CR	437643-437674	32	NZ_CP020462	Staphylococcus epidermidis strain 1457 plasmid p1457, complete sequence	6451-6482	7	0.781
NC_013891_2	2.6\|444277\|35\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	444277-444311	35	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	694618-694652	7	0.8
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP004007	Legionella oakridgensis ATCC 33761 = DSM 21215 plasmid unnamed, complete sequence	30935-30963	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	304092-304120	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	7095-7123	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	7136-7164	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP013332	Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence	3803-3831	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP015809	Borrelia mayonii strain MN14-1539 plasmid lp54	28359-28387	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP015795	Borrelia mayonii strain MN14-1420 plasmid lp54, complete sequence	28375-28403	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	339102-339130	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MN693770	Marine virus AFVG_250M115, complete genome	12324-12352	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	MK504443	Lactobacillus phage 521B, complete genome	117651-117679	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	371894-371922	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NC_010543	Crocosphaera subtropica ATCC 51142 plasmid D, complete sequence	10142-10170	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	486476-486504	7	0.759
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP014175	Clostridium argentinense strain 89G plasmid pRSJ17_1, complete sequence	80250-80278	7	0.759
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	76929-76964	7	0.806
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NC_006578	[Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence	54273-54308	7	0.806
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP053937	Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence	56394-56429	7	0.806
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP053978	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence	63661-63696	7	0.806
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	32507-32542	7	0.806
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP014851	Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence	80031-80066	7	0.806
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP010087	Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence	41195-41230	7	0.806
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP009333	Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence	7703-7738	7	0.806
NC_013891_4	4.1\|1174093\|30\|NC_013891\|CRISPRCasFinder,CRT	1174093-1174122	30	KY653129	Staphylococcus phage IME1365_01, complete genome	39958-39987	7	0.767
NC_013891_4	4.1\|1174093\|30\|NC_013891\|CRISPRCasFinder,CRT	1174093-1174122	30	MK773491	Salmonella phage 7t3, complete genome	347900-347929	7	0.767
NC_013891_4	4.1\|1174093\|30\|NC_013891\|CRISPRCasFinder,CRT	1174093-1174122	30	MK268344	Salmonella phage Munch, complete genome	284760-284789	7	0.767
NC_013891_4	4.1\|1174093\|30\|NC_013891\|CRISPRCasFinder,CRT	1174093-1174122	30	MT001829	Salmonella phage SE_PL, complete genome	836-865	7	0.767
NC_013891_3	3.3\|454466\|34\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454466-454499	34	LT615366	Enterococcus phage VPE25 genome assembly, chromosome: VPE25	57173-57206	8	0.765
NC_013891_3	3.3\|454466\|34\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454466-454499	34	LT546030	Enterococcus phage VPE25 genome assembly, chromosome: I	57173-57206	8	0.765
NC_013891_3	3.3\|454466\|34\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454466-454499	34	MT119361	Enterococus phage vipetofem, complete genome	28791-28824	8	0.765
NC_013891_3	3.13\|455118\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455118-455154	37	NZ_CP049297	Bacillus megaterium strain S188 plasmid pS188, complete sequence	98629-98665	8	0.784
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP032745	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence	34786-34814	8	0.724
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	21901-21929	8	0.724
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	KU057941	Clostridium phage CDSH1, complete genome	39110-39138	8	0.724
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	HM568888	Clostridium phage phiCD38-2, complete genome	38608-38636	8	0.724
NC_013891_3	3.24\|455830\|29\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455830-455858	29	LN881738	Escherichia phage slur17, complete genome	22918-22946	8	0.724
NC_013891_3	3.26\|455954\|36\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455954-455989	36	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	95901-95936	8	0.778
NC_013891_4	4.1\|1174093\|30\|NC_013891\|CRISPRCasFinder,CRT	1174093-1174122	30	NZ_LR134431	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 22	2310-2339	9	0.7
NC_013891_3	3.3\|454466\|34\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454466-454499	34	LT546029	Enterococcus phage VFW genome assembly, chromosome: VFW	56434-56467	10	0.706
NC_013891_3	3.3\|454466\|34\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	454466-454499	34	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	218062-218095	10	0.706
NC_013891_4	4.4\|1174291\|30\|NC_013891\|CRISPRCasFinder,CRT,PILER-CR	1174291-1174320	30	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	428085-428114	10	0.667
NC_013891_2	2.27\|445633\|35\|NC_013891\|CRISPRCasFinder,CRT	445633-445667	35	MT460516	Vibrio phage Quinn, complete genome	1267-1301	11	0.686
NC_013891_2	2.27\|445633\|35\|NC_013891\|CRISPRCasFinder,CRT	445633-445667	35	MT460516	Vibrio phage Quinn, complete genome	121000-121034	11	0.686
NC_013891_2	2.27\|445633\|35\|NC_013891\|CRISPRCasFinder,CRT	445633-445667	35	MT460518	Vibrio phage Direpillow8, complete genome	1703-1737	11	0.686
NC_013891_2	2.27\|445633\|35\|NC_013891\|CRISPRCasFinder,CRT	445633-445667	35	MT460518	Vibrio phage Direpillow8, complete genome	122032-122066	11	0.686
NC_013891_3	3.13\|455118\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455118-455154	37	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	36297-36333	12	0.676
NC_013891_3	3.13\|455118\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455118-455154	37	NC_019688	Clostridium perfringens plasmid pNetB-NE10, complete sequence	59181-59217	12	0.676
NC_013891_3	3.13\|455118\|37\|NC_013891\|PILER-CR,CRISPRCasFinder,CRT	455118-455154	37	NZ_CP025502	Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence	44006-44042	12	0.676

1. spacer 2.2|444019|35|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 0, identity: 1.0

aaaaccaacgacgtataacaaaattggcgatggat	CRISPR spacer
aaaaccaacgacgtataacaaaattggcgatggat	Protospacer
***********************************

2. spacer 3.2|454400|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttaacttaaattatattatactaattaagtttg	CRISPR spacer
ctttttaacttaaattatattatactaattaagtttg	Protospacer
*************************************

3. spacer 2.1|443954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 1, identity: 0.972

aataatgttcaatacaatggtggtaataccatgaag	CRISPR spacer
aataatgttcaatataatggtggtaataccatgaag	Protospacer
**************.*********************

4. spacer 2.7|444341|38|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 1, identity: 0.974

acctgttaggtcgggaggattcgagaggtttagttgtt	CRISPR spacer
acctgttgggtcgggaggattcgagaggtttagttgtt	Protospacer
*******.******************************

5. spacer 2.11|444598|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 1, identity: 0.972

atagcatccccagcctcatagttccccatgataaac	CRISPR spacer
atagcatccccagcctcatagttccccatgataaat	Protospacer
***********************************.

6. spacer 3.2|454400|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to FW590615 (JP 2010534058-A/25: ANTIBIOTIC RESISTANCE FREE LISTERIA STRAINS AND METHODS FOR CONSTRUCTING AND USING SAME) position: , mismatch: 1, identity: 0.973

ctttttaacttaaattatattatactaattaagtttg	CRISPR spacer
cttttttacttaaattatattatactaattaagtttg	Protospacer
****** ******************************

7. spacer 3.2|454400|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to HI504184 (Sequence 26 from Patent EP2147092) position: , mismatch: 1, identity: 0.973

ctttttaacttaaattatattatactaattaagtttg	CRISPR spacer
cttttttacttaaattatattatactaattaagtttg	Protospacer
****** ******************************

8. spacer 3.2|454400|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to AJ417489 (bacteriophage U153 int gene for U153 integrase) position: , mismatch: 1, identity: 0.973

ctttttaacttaaattatattatactaattaagtttg	CRISPR spacer
cttttttacttaaattatattatactaattaagtttg	Protospacer
****** ******************************

9. spacer 3.2|454400|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.973

ctttttaacttaaattatattatactaattaagtttg	CRISPR spacer
cttttttacttaaattatattatactaattaagtttg	Protospacer
****** ******************************

10. spacer 3.3|454466|34|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 1, identity: 0.971

aaatttaggaggaacttaaaaatgaacagatacg	CRISPR spacer
aaatttaggaggaatttaaaaatgaacagatacg	Protospacer
**************.*******************

11. spacer 3.4|454529|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 1, identity: 0.973

ctcttccgcgagtgccttttgactcttgtagcgcttt	CRISPR spacer
ctcttccgcgagtgccttttgactcttgtagcgtttt	Protospacer
*********************************.***

12. spacer 3.2|454400|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.946

ctttttaacttaaattatattatactaattaagtttg	CRISPR spacer
ctttttaacttaaattatattatactatttaagtatg	Protospacer
*************************** ****** **

13. spacer 3.2|454400|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 2, identity: 0.946

ctttttaacttaaattatattatactaattaagtttg	CRISPR spacer
ctttttaacttaaattatattatactatttaagtatg	Protospacer
*************************** ****** **

14. spacer 3.6|454661|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 2, identity: 0.946

ttgggaattcgtggtaatattgtactacgggaataag	CRISPR spacer
ttgtgaattcgtggtactattgtactacgggaataag	Protospacer
*** ************ ********************

15. spacer 3.8|454792|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 2, identity: 0.944

atacccaattgccattctcatctcgttcatagtccc	CRISPR spacer
atacccaattaccattctcatctcgttcgtagtccc	Protospacer
**********.*****************.*******

16. spacer 2.5|444212|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 3, identity: 0.917

cttcaaagagcaaaataaacaagcactaaaacgttt	CRISPR spacer
tttcaaatatcaaaataaacaagcactaaaacgttt	Protospacer
.****** * **************************

17. spacer 2.9|444471|35|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 3, identity: 0.914

gacttagaggagttaggagccgtagaatcctcatc	CRISPR spacer
gacttagaggagttaggagccgtagaatcgtcact	Protospacer
***************************** ***..

18. spacer 1.4|437574|36|NC_013891|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 4, identity: 0.889

agttttgtggatgatttccattggagacttaccaaa	CRISPR spacer
ttctttgtggatgatttccattggagatttaccaaa	Protospacer
  .************************.********

19. spacer 1.4|437574|36|NC_013891|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 5, identity: 0.861

agttttgtggatgatttccattggagacttaccaaa	CRISPR spacer
ttctttatggatgatttccattggcgacttaccaaa	Protospacer
  .***.***************** ***********

20. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 5, identity: 0.828

ataatttcttttatcttttcattcttatc	CRISPR spacer
gttatttctttattcttttcattcttatt	Protospacer
.* ********  ***************.

21. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 5, identity: 0.828

ataatttcttttatcttttcattcttatc	CRISPR spacer
accaattcttttattttttccttcttatc	Protospacer
*. * *********.***** ********

22. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 5, identity: 0.828

ataatttcttttatcttttcattcttatc	CRISPR spacer
ataatttcttttatttttgcattgtcttc	Protospacer
**************.*** **** *. **

23. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to KR131710 (Fusobacterium phage Funu1, complete genome) position: , mismatch: 5, identity: 0.828

ataatttcttttatcttttcattcttatc	CRISPR spacer
ataatttctttttgcttttcatttataac	Protospacer
************  *********. ** *

24. spacer 3.3|454466|34|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 6, identity: 0.824

aaatttaggaggaacttaaaaatgaacagatacg-	CRISPR spacer
aaaattaggaggaatttaaaaatgaa-aaaaacat	Protospacer
*** **********.*********** *.* **.

25. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MH616883 (Inoviridae sp. isolate ctbd3, complete genome) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
tgtatttcttttatcttttaatacttatg	Protospacer
   **************** ** *****

26. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054442 (Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-2, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
acgttttcttttatactttcattcttatt	Protospacer
*.. ********** .************.

27. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014058 (Staphylococcus saprophyticus strain FDAARGOS_137 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
acgttttcttttatactttcattcttatt	Protospacer
*.. ********** .************.

28. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014114 (Staphylococcus saprophyticus strain FDAARGOS_168 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
acgttttcttttatactttcattcttatt	Protospacer
*.. ********** .************.

29. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_016643 (Staphylococcus saprophyticus subsp. saprophyticus plasmid pSSAP2, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
acgttttcttttatactttcattcttatt	Protospacer
*.. ********** .************.

30. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054435 (Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-1, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
acgttttcttttatactttcattcttatt	Protospacer
*.. ********** .************.

31. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041688 (Chryseobacterium sp. SNU WT5 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
gcaatttcttttaacttttcattcattgc	Protospacer
..*********** ********** *  *

32. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054446 (Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-2, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
acgttttcttttatactttcattcttatt	Protospacer
*.. ********** .************.

33. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MK448464 (Streptococcus satellite phage Javan387, complete genome) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
aatttttcttttatcttttaattcttttt	Protospacer
*   *************** ****** *.

34. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MK448475 (Streptococcus satellite phage Javan403, complete genome) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
aatttttcttttatcttttaattcttttt	Protospacer
*   *************** ****** *.

35. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MN783745 (Escherichia coli plasmid pFII-FIB, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
agcatttcttttattttttcattattttt	Protospacer
*  ***********.******** ** *.

36. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to CP016195 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
tttagttcctttatctttttattcttata	Protospacer
 * * ***.**********.********

37. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MN693534 (Marine virus AFVG_25M18, complete genome) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
ataatttcttttaccttttctttatcttt	Protospacer
*************.****** ** *. *.

38. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcat-tcttatc	CRISPR spacer
ttaatttcttttattttttcatatagcat-	Protospacer
 *************.******* *  .**

39. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcat-tcttatc	CRISPR spacer
ttaatttcttttattttttcatatagcat-	Protospacer
 *************.******* *  .**

40. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007544 (Synechocystis sp. PCC 6714 plasmid pSYLB, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
acaaaagcttttttcttttcattcttatt	Protospacer
*.**   ***** ***************.

41. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcat-tcttatc	CRISPR spacer
ttaatttcttttattttttcatatagcat-	Protospacer
 *************.******* *  .**

42. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MH319726 (Marine virus AG-345-D19 Ga0172267_107 genomic sequence) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
gttgtttctttaatctttttattcttaac	Protospacer
.* .******* *******.******* *

43. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to KF929199 (Staphylococcus phage vB_SepS_SEP9, complete genome) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
atagtttcttttatcttttcaatatcagt	Protospacer
***.***************** * *.* .

44. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to AP013551 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23A-MedDCM-OCT-S43-C49, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
ataattttttttatcttttaattttaaaa	Protospacer
*******.*********** ***.* *

45. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to AP013583 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S25-C129, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
ataattttttttatcttttaattttaaaa	Protospacer
*******.*********** ***.* *

46. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to AP013552 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C23B-MedDCM-OCT-S39-C49, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 6, identity: 0.793

ataatttcttttatcttttcattcttatc	CRISPR spacer
ataattttttttatcttttaattttaaaa	Protospacer
*******.*********** ***.* *

47. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024108 (Bacillus cytotoxicus strain CH_15 plasmid pCh15_83, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

48. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024100 (Bacillus cytotoxicus strain CH_38 plasmid pCh38_83, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

49. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024122 (Bacillus cytotoxicus strain CH_1 plasmid pCh1_67, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

50. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024115 (Bacillus cytotoxicus strain CH_3 plasmid pCh3_83, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

51. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024110 (Bacillus cytotoxicus strain CH_13 plasmid pCh13_79, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

52. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024106 (Bacillus cytotoxicus strain CH_23 plasmid pCh23_67, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

53. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024118 (Bacillus cytotoxicus strain CH_2 plasmid pCh2_83, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

54. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024097 (Bacillus cytotoxicus strain CH_39 plasmid pCh39_83, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

55. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024103 (Bacillus cytotoxicus strain CH_25 plasmid pCh25_67, complete sequence) position: , mismatch: 6, identity: 0.833

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcagaatggtc	Protospacer
 *.  *****************************

56. spacer 1.6|437643|32|NC_013891|PILER-CR matches to NZ_CP014116 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed4) position: , mismatch: 7, identity: 0.781

ccgtcaga--ttgattataatagattgtccgttt	CRISPR spacer
--aacagaatctgattttaatagattctccgttt	Protospacer
  . ****  .***** ********* *******

57. spacer 1.6|437643|32|NC_013891|PILER-CR matches to NZ_CP014117 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

ccgtcaga--ttgattataatagattgtccgttt	CRISPR spacer
--aacagaatctgattttaatagattctccgttt	Protospacer
  . ****  .***** ********* *******

58. spacer 1.6|437643|32|NC_013891|PILER-CR matches to NZ_CP014120 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ccgtcaga--ttgattataatagattgtccgttt	CRISPR spacer
--aacagaatctgattttaatagattctccgttt	Protospacer
  . ****  .***** ********* *******

59. spacer 1.6|437643|32|NC_013891|PILER-CR matches to NZ_CP020462 (Staphylococcus epidermidis strain 1457 plasmid p1457, complete sequence) position: , mismatch: 7, identity: 0.781

ccgtcaga--ttgattataatagattgtccgttt	CRISPR spacer
--aacagaatctgattttaatagattctccgttt	Protospacer
  . ****  .***** ********* *******

60. spacer 2.6|444277|35|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.8

tctaatgggacatgatggtgatatcgttgatactt	CRISPR spacer
tggaatgggccatgatggtgatatctttgacattg	Protospacer
*  ****** *************** ****.*.*

61. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004007 (Legionella oakridgensis ATCC 33761 = DSM 21215 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ttaatttcttttctcttttcattggaaga	Protospacer
 *********** **********   *

62. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ctcatttcttttatcttttctttttttaa	Protospacer
 * ***************** **.**

63. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ctcatttcttttatcttttctttttttaa	Protospacer
 * ***************** **.**

64. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ctcatttcttttatcttttctttttttaa	Protospacer
 * ***************** **.**

65. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
tctatttcttttatattttctttcttttt	Protospacer
 . *********** ***** ***** *.

66. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015809 (Borrelia mayonii strain MN14-1539 plasmid lp54) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
aacatttcttctatcttttaattcttcag	Protospacer
*  *******.******** ******

67. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015795 (Borrelia mayonii strain MN14-1420 plasmid lp54, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
aacatttcttctatcttttaattcttcag	Protospacer
*  *******.******** ******

68. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ctcatttcttttatcttttctttttttaa	Protospacer
 * ***************** **.**

69. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MN693770 (Marine virus AFVG_250M115, complete genome) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
taaatttcttttatctttttatttatgtt	Protospacer
  *****************.***. *.*.

70. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ataatctcttttttcttttcatttaaaaa	Protospacer
*****.****** **********.  *

71. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ctcatttcttttatcttttctttttttaa	Protospacer
 * ***************** **.**

72. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_010543 (Crocosphaera subtropica ATCC 51142 plasmid D, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
taaggatcttttattttttccttcttatc	Protospacer
  *.  ********.***** ********

73. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
ctcatttcttttatcttttctttttttaa	Protospacer
 * ***************** **.**

74. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014175 (Clostridium argentinense strain 89G plasmid pRSJ17_1, complete sequence) position: , mismatch: 7, identity: 0.759

ataatttcttttatcttttcattcttatc	CRISPR spacer
attatttcttttatcttttcctttaaaat	Protospacer
** ***************** **.  * .

75. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagcctggatgaagcagggtatgatgctgaatggac	Protospacer
 *.  ********************** ******.

76. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_006578 ([Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcggaatggtt	Protospacer
 *.  **********************.******

77. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053937 (Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcggaatggtt	Protospacer
 *.  **********************.******

78. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053978 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcggaatggtt	Protospacer
 *.  **********************.******

79. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagcctggatgaagcagggtatgatgctgaatggac	Protospacer
 *.  ********************** ******.

80. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagcctggatgaagcagggtatgatgcggaatggtc	Protospacer
 *.  **********************.******

81. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010087 (Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcggaatggtt	Protospacer
 *.  **********************.******

82. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009333 (Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.806

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtttggatgaagcagggtatgatgcggaatggtt	Protospacer
 *.  **********************.******

83. spacer 4.1|1174093|30|NC_013891|CRISPRCasFinder,CRT matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 7, identity: 0.767

ccgccaaaagtatcagaaaatgttattgca	CRISPR spacer
caatataaagtatcagataacgttattgca	Protospacer
* ..  *********** **.*********

84. spacer 4.1|1174093|30|NC_013891|CRISPRCasFinder,CRT matches to MK773491 (Salmonella phage 7t3, complete genome) position: , mismatch: 7, identity: 0.767

ccgccaaaagtatcagaaaatgttattgca	CRISPR spacer
tcaccaaaagtatctgaagatgttattcat	Protospacer
.*.*********** ***.********

85. spacer 4.1|1174093|30|NC_013891|CRISPRCasFinder,CRT matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 7, identity: 0.767

ccgccaaaagtatcagaaaatgttattgca	CRISPR spacer
tcaccaaaagtatctgaagatgttattcat	Protospacer
.*.*********** ***.********

86. spacer 4.1|1174093|30|NC_013891|CRISPRCasFinder,CRT matches to MT001829 (Salmonella phage SE_PL, complete genome) position: , mismatch: 7, identity: 0.767

ccgccaaaagtatcagaaaatgttattgca	CRISPR spacer
tcaccaaaagtatctgaagatgttattcat	Protospacer
.*.*********** ***.********

87. spacer 3.3|454466|34|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 8, identity: 0.765

aaatttaggaggaacttaaaaatga-acagatacg	CRISPR spacer
taatttaggaggaaatttaaaatgacactagaac-	Protospacer
 ************* ** ******* ** .. **

88. spacer 3.3|454466|34|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.765

aaatttaggaggaacttaaaaatga-acagatacg	CRISPR spacer
taatttaggaggaaatttaaaatgacactagaac-	Protospacer
 ************* ** ******* ** .. **

89. spacer 3.3|454466|34|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to MT119361 (Enterococus phage vipetofem, complete genome) position: , mismatch: 8, identity: 0.765

aaatttaggaggaacttaaaaatga-acagatacg	CRISPR spacer
taatttaggaggaaatttaaaatgacactagaac-	Protospacer
 ************* ** ******* ** .. **

90. spacer 3.13|455118|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049297 (Bacillus megaterium strain S188 plasmid pS188, complete sequence) position: , mismatch: 8, identity: 0.784

gcagttacaa----atttaataatttcatttctatatttta	CRISPR spacer
----tttcaaatgcatttattaatttcatttttatattttc	Protospacer
    ** ***    ***** ***********.********

91. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032745 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

ataatttcttttatcttttcattcttatc	CRISPR spacer
tcaatttcctttatcttttcattgaatgc	Protospacer
 .******.**************     *

92. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 8, identity: 0.724

ataatttcttttatcttttcattcttatc	CRISPR spacer
gctcgctcttttatcccttcattcttatc	Protospacer
..   .*********..************

93. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 8, identity: 0.724

ataatttcttttatcttttcattcttatc	CRISPR spacer
tcatattcttttatcttttcatttttgca	Protospacer
 .*  ******************.**..

94. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 8, identity: 0.724

ataatttcttttatcttttcattcttatc	CRISPR spacer
tcatattcttttatcttttcatttttgca	Protospacer
 .*  ******************.**..

95. spacer 3.24|455830|29|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 8, identity: 0.724

ataatttcttttatcttttcattcttatc	CRISPR spacer
tcatattcttttatcttttcatttttgca	Protospacer
 .*  ******************.**..

96. spacer 3.26|455954|36|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 8, identity: 0.778

aaaaatggatgaagcagggtatgatgcagaatggga	CRISPR spacer
tagtctggatgaagctgggtacgatgcagaatggtc	Protospacer
 *.  ********** *****.************

97. spacer 4.1|1174093|30|NC_013891|CRISPRCasFinder,CRT matches to NZ_LR134431 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 22) position: , mismatch: 9, identity: 0.7

ccgccaaaagtatcagaaaatgttattgca	CRISPR spacer
agtgggaaagaatcagaaaaagttattgct	Protospacer
     .**** ********* ********

98. spacer 3.3|454466|34|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 10, identity: 0.706

aaatttaggaggaacttaaaaatgaacagatacg	CRISPR spacer
taatttaggaggaaatttaaaatgacattagaaa	Protospacer
 ************* ** *******    * * .

99. spacer 3.3|454466|34|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 10, identity: 0.706

aaatttaggaggaacttaaaaatgaacagatacg	CRISPR spacer
gtacctctgaagaactcaaaaatgaacagatatc	Protospacer
. *..*  **.*****.***************.

100. spacer 4.4|1174291|30|NC_013891|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.667

ttagtcaacccctcgctgcattttcacatt	CRISPR spacer
aagctcaacccctcgctgcgttttccagcg	Protospacer
  . ***************.*****  ..

101. spacer 2.27|445633|35|NC_013891|CRISPRCasFinder,CRT matches to MT460516 (Vibrio phage Quinn, complete genome) position: , mismatch: 11, identity: 0.686

atatacggtatccggtatactcgccgtcccattct	CRISPR spacer
caatacggtatccggtacactcaccgtttttgaca	Protospacer
  ***************.****.****...   *

102. spacer 2.27|445633|35|NC_013891|CRISPRCasFinder,CRT matches to MT460516 (Vibrio phage Quinn, complete genome) position: , mismatch: 11, identity: 0.686

atatacggtatccggtatactcgccgtcccattct	CRISPR spacer
caatacggtatccggtacactcaccgtttttgaca	Protospacer
  ***************.****.****...   *

103. spacer 2.27|445633|35|NC_013891|CRISPRCasFinder,CRT matches to MT460518 (Vibrio phage Direpillow8, complete genome) position: , mismatch: 11, identity: 0.686

atatacggtatccggtatactcgccgtcccattct	CRISPR spacer
cgatacggtatccggtacactcaccgtttttgaca	Protospacer
  ***************.****.****...   *

104. spacer 2.27|445633|35|NC_013891|CRISPRCasFinder,CRT matches to MT460518 (Vibrio phage Direpillow8, complete genome) position: , mismatch: 11, identity: 0.686

atatacggtatccggtatactcgccgtcccattct	CRISPR spacer
cgatacggtatccggtacactcaccgtttttgaca	Protospacer
  ***************.****.****...   *

105. spacer 3.13|455118|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 12, identity: 0.676

gcagttacaaatttaataatttcatttctatatttta	CRISPR spacer
aggattacaaatttatcaatttcatttctacgaaatt	Protospacer
. ..*********** .*************..   *

106. spacer 3.13|455118|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NC_019688 (Clostridium perfringens plasmid pNetB-NE10, complete sequence) position: , mismatch: 12, identity: 0.676

gcagttacaaatttaataatttcatttctatatttta	CRISPR spacer
aattatacaaatttaatattttcctttctattcaatc	Protospacer
.    ************* **** ******* .  *

107. spacer 3.13|455118|37|NC_013891|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025502 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence) position: , mismatch: 12, identity: 0.676

gcagttacaaatttaataatttcatttctatatttta	CRISPR spacer
aattatacaaatttaatattttcctttctattcaatc	Protospacer
.    ************* **** ******* .  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1028963 : 1036308

Hokovirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003746848.1\|1028963_1029347_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.8e-16	43.0
WP_012985346.1\|1029359_1030343_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.7e-10	32.8
WP_012985347.1\|1030357_1031371_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.1e-09	31.4
WP_012985348.1\|1031511_1033002_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.3e-112	49.3
WP_012985349.1\|1033013_1033838_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	54.0
WP_012985350.1\|1033850_1034159_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_012985351.1\|1034217_1034622_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
WP_012985352.1\|1034751_1036308_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.9e-17	27.6

DBSCAN-SWA_2

1171703 : 1218731

Listeria_phage(16.67%)

protease,integrase,transposase,tRNA

attL 1164434:1164450|attR 1174755:1174771

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1164434:1164450	attL	NA	NA	NA	NA
WP_012985474.1\|1171703_1172705_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_077904629.1\|1173157_1173376_-\|integrase	tyrosine-type recombinase/integrase	A8ATX2	Listeria_phage	6.2e-14	53.5
WP_012985476.1\|1173572_1173833_+	hypothetical protein	NA	NA	NA	NA
WP_012985477.1\|1174427_1177790_+	type VI-A CRISPR-associated RNA-guided ribonuclease Cas13a	NA	NA	NA	NA
1174755:1174771	attR	NA	NA	NA	NA
WP_012985478.1\|1177975_1179385_+	hypothetical protein	NA	NA	NA	NA
WP_012985479.1\|1179396_1179747_+	hypothetical protein	NA	NA	NA	NA
WP_012985480.1\|1179867_1180011_+	hypothetical protein	NA	NA	NA	NA
WP_012985481.1\|1180933_1181725_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012985482.1\|1181984_1182578_-	YdeI family protein	NA	NA	NA	NA
WP_012985483.1\|1182711_1183119_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
WP_012985484.1\|1183284_1183893_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	1.5e-28	40.5
WP_012985485.1\|1183939_1184200_-	hypothetical protein	NA	NA	NA	NA
WP_041176170.1\|1184324_1185737_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.0e-56	33.9
WP_012985487.1\|1185761_1186025_+	DUF3116 family protein	NA	NA	NA	NA
WP_012985488.1\|1186177_1186654_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_003747345.1\|1186691_1186937_-	hypothetical protein	NA	NA	NA	NA
WP_012985489.1\|1186933_1188139_-	MFS transporter	NA	NA	NA	NA
WP_012985490.1\|1188344_1189004_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_003747352.1\|1189050_1189245_-	hypothetical protein	NA	NA	NA	NA
WP_012985491.1\|1189309_1190155_-	YitT family protein	NA	NA	NA	NA
WP_003747356.1\|1190482_1190620_-	hypothetical protein	NA	NA	NA	NA
WP_012985493.1\|1190769_1191486_+	trehalose operon repressor	NA	NA	NA	NA
WP_012985494.1\|1193181_1194666_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA
WP_012985495.1\|1194790_1195243_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_003747366.1\|1195280_1195745_-	hypothetical protein	NA	NA	NA	NA
WP_012985496.1\|1195933_1196863_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012985498.1\|1196975_1198223_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.1e-106	52.3
WP_012985499.1\|1198206_1199037_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.3e-47	42.7
WP_012985500.1\|1199203_1200343_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_012985501.1\|1200423_1200819_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	3.0e-14	55.9
WP_003747378.1\|1200969_1201185_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012985502.1\|1201772_1202384_+	hypothetical protein	NA	NA	NA	NA
WP_012985503.1\|1202405_1202774_+	hypothetical protein	NA	NA	NA	NA
WP_012985504.1\|1202959_1203187_+	hypothetical protein	R4IDW6	Listeria_phage	1.3e-25	70.7
WP_012985505.1\|1203485_1204424_+	hypothetical protein	NA	NA	NA	NA
WP_012985506.1\|1204539_1205823_+	trigger factor	NA	NA	NA	NA
WP_012985507.1\|1206007_1207267_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-146	63.4
WP_012985508.1\|1207385_1207952_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_012985509.1\|1207985_1208555_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_012985510.1\|1208657_1209200_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_012985511.1\|1209209_1210073_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_012985512.1\|1210069_1210855_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.6e-27	40.2
WP_012985513.1\|1210988_1211855_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_012985514.1\|1212115_1214194_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.5e-106	37.4
WP_012985515.1\|1214257_1215562_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_012985516.1\|1215845_1216748_+	tyrosine recombinase XerC	W8EHC2	Mycobacterium_phage	7.5e-13	28.5
WP_003724001.1\|1216768_1217308_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_012985518.1\|1217321_1218731_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	1.7e-43	29.0

DBSCAN-SWA_3

1620393 : 1663024

Staphylococcus_phage(21.74%)

holin,terminase,capsid,head,tRNA,tail,portal,protease,integrase

attL 1606215:1606235|attR 1670613:1670633

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1606215:1606235	attL	NA	NA	NA	NA
WP_012985785.1\|1620393_1620888_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_041176178.1\|1620884_1621214_-	hypothetical protein	NA	NA	NA	NA
WP_012985786.1\|1621687_1622116_-	hypothetical protein	NA	NA	NA	NA
WP_003748110.1\|1622552_1623437_-	elongation factor Ts	NA	NA	NA	NA
WP_003748112.1\|1623516_1624266_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_012985787.1\|1624478_1624772_-	phage transcriptional activator ArpU family protein	NA	NA	NA	NA
WP_012985788.1\|1624961_1626410_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_003752729.1\|1626422_1627313_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_012985789.1\|1627463_1628315_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_041176179.1\|1628402_1630814_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	69.9
WP_003752733.1\|1631219_1632185_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.9e-49	63.8
WP_012985791.1\|1632181_1632757_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	5.1e-39	46.0
WP_012985792.1\|1632781_1634647_-	asparagine synthase (glutamine-hydrolyzing)	A0A1V0SGM7	Hokovirus	1.3e-38	30.0
WP_012985793.1\|1634782_1635982_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.6e-149	69.8
WP_012985795.1\|1636646_1636931_+	hypothetical protein	NA	NA	NA	NA
WP_012985796.1\|1636949_1637189_+	hypothetical protein	NA	NA	NA	NA
WP_012985798.1\|1638052_1638331_-\|holin	holin	A0A1S7FZ29	Listeria_phage	1.5e-20	58.2
WP_012985799.1\|1638352_1638739_-	hypothetical protein	NA	NA	NA	NA
WP_148213644.1\|1638757_1638907_-	XkdX family protein	NA	NA	NA	NA
WP_012985801.1\|1638908_1639196_-	DUF2977 domain-containing protein	NA	NA	NA	NA
WP_012985802.1\|1639214_1639694_-	hypothetical protein	NA	NA	NA	NA
WP_012985803.1\|1639693_1640074_-	hypothetical protein	NA	NA	NA	NA
WP_012985804.1\|1640066_1640684_-	hypothetical protein	NA	NA	NA	NA
WP_012985805.1\|1640698_1642132_-\|tail	phage tail protein	A0A1B2APX2	Phage_Wrath	1.4e-85	45.9
WP_012985806.1\|1642132_1642837_-	hypothetical protein	A0A1B2APY0	Phage_Wrath	6.2e-47	42.2
WP_012985807.1\|1642836_1645422_-\|tail	phage tail tape measure protein	A0A1G5SB90	Enterococcus_phage	2.4e-64	42.2
WP_012985809.1\|1645740_1646025_-	hypothetical protein	NA	NA	NA	NA
WP_012985810.1\|1646026_1646605_-	hypothetical protein	NA	NA	NA	NA
WP_012985811.1\|1646601_1646985_-	hypothetical protein	NA	NA	NA	NA
WP_012985812.1\|1646987_1647398_-	hypothetical protein	A0A0S2MVE4	Bacillus_phage	2.9e-12	46.2
WP_012985813.1\|1647399_1647726_-	hypothetical protein	NA	NA	NA	NA
WP_012985814.1\|1647729_1648047_-\|head,tail	phage head-tail connector protein	A0A1X9I6Z8	Streptococcus_phage	7.7e-05	33.8
WP_012985815.1\|1648051_1648876_-	hypothetical protein	A0A0M5M1L4	Bacillus_phage	9.1e-66	49.5
WP_012985816.1\|1648896_1649481_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_012985817.1\|1649589_1650354_-\|capsid	minor capsid protein	A0A090D822	Clostridium_phage	1.4e-23	29.7
WP_012985818.1\|1650343_1651735_-\|portal	phage portal protein	A0A0M4S669	Bacillus_phage	1.9e-87	42.4
WP_012985819.1\|1651734_1653027_-\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	1.2e-176	68.1
WP_012985820.1\|1653016_1653769_-	helix-turn-helix domain-containing protein	A0A0B5CTX0	Listeria_phage	8.7e-31	36.7
WP_012985821.1\|1654097_1654460_-	hypothetical protein	NA	NA	NA	NA
WP_012985822.1\|1654452_1654647_-	hypothetical protein	NA	NA	NA	NA
WP_148213645.1\|1654636_1654903_-	hypothetical protein	NA	NA	NA	NA
WP_012985824.1\|1655081_1655786_-	DUF2786 domain-containing protein	A0A1U9WR73	Streptococcus_virus	1.5e-21	32.7
WP_012985825.1\|1655798_1656341_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7Y2	Bacillus_phage	7.1e-43	49.4
WP_012985826.1\|1656333_1656852_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012985827.1\|1656871_1657273_-	hypothetical protein	NA	NA	NA	NA
WP_012985828.1\|1657269_1657623_-	hypothetical protein	NA	NA	NA	NA
WP_077904644.1\|1657615_1658251_-	hypothetical protein	A0A068EMK6	Bacillus_phage	6.4e-27	35.5
WP_012985830.1\|1658288_1659212_-	restriction endonuclease specificity (S) protein	A0A1L2JY26	Aeribacillus_phage	7.7e-21	53.7
WP_012985831.1\|1659220_1659925_-	hypothetical protein	NA	NA	NA	NA
WP_012985832.1\|1660023_1660209_-	hypothetical protein	NA	NA	NA	NA
WP_012985834.1\|1660380_1660545_+	YjzC family protein	A0A0A7RTS6	Clostridium_phage	1.2e-17	73.6
WP_041176182.1\|1660690_1661008_-	hypothetical protein	NA	NA	NA	NA
WP_012985836.1\|1661034_1661280_-	hypothetical protein	NA	NA	NA	NA
WP_012985837.1\|1661447_1661795_+	helix-turn-helix transcriptional regulator	A0A1D6Z276	Staphylococcus_phage	1.2e-14	40.0
WP_012985838.1\|1661803_1663024_+\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	1.7e-28	28.2
1670613:1670633	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1787239 : 1795511

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012985918.1\|1787239_1787794_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	5.4e-30	40.2
WP_012985919.1\|1787790_1788840_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	3.4e-65	42.7
WP_012985920.1\|1788855_1790283_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.8e-53	34.4
WP_012985921.1\|1790267_1792487_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.8e-156	40.6
WP_012985922.1\|1792479_1793163_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012985923.1\|1793166_1793412_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_012985924.1\|1793423_1794137_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.5e-40	37.8
WP_012985925.1\|1794218_1795511_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.4e-17	33.0

DBSCAN-SWA_5

1964795 : 1972806

Faustovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012986053.1\|1964795_1965881_-	histidinol-phosphate transaminase	A0A1X7BZP2	Faustovirus	5.5e-18	26.0
WP_003748597.1\|1965880_1966255_-	chorismate mutase	NA	NA	NA	NA
WP_012986054.1\|1966251_1967349_-	3-dehydroquinate synthase	E5ERI4	Ostreococcus_lucimarinus_virus	6.7e-24	28.2
WP_012986055.1\|1967351_1968518_-	chorismate synthase	A0A291AU41	Pandoravirus	1.6e-47	39.2
WP_003748602.1\|1968722_1969166_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.4e-28	44.8
WP_012986056.1\|1969185_1970151_-	heptaprenyl diphosphate synthase component II	A0A1V0SE37	Indivirus	7.8e-08	22.2
WP_012986057.1\|1970161_1970875_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_012986058.1\|1970896_1971664_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_003748610.1\|1971723_1972293_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	3.1e-41	47.2
WP_003720260.1\|1972530_1972806_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	2.0e-25	69.7

DBSCAN-SWA_6

2441519 : 2449373

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003749469.1\|2441519_2442491_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	8.8e-52	39.4
WP_003749470.1\|2442498_2443467_-	YvcK family protein	A1IMD5	Streptococcus_phage	3.3e-67	42.7
WP_012986393.1\|2443468_2444344_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_012986394.1\|2444451_2446182_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	7.8e-168	52.1
WP_012986395.1\|2446227_2447298_-	galactose mutarotase	NA	NA	NA	NA
WP_012986396.1\|2447312_2448299_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	5.1e-55	39.9
WP_012986397.1\|2448413_2449373_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	8.9e-89	54.1

DBSCAN-SWA_7

2739110 : 2749165

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012986588.1\|2739110_2741264_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	2.6e-43	33.6
WP_012986589.1\|2741310_2743086_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	3.7e-80	37.3
WP_012986590.1\|2743248_2744715_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.8e-96	39.8
WP_012986591.1\|2744998_2745529_-	ADP-ribose-binding protein	A0A0K1L687	Scale_drop_disease_virus	1.7e-28	46.6
WP_012986592.1\|2745586_2747197_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.0e-44	28.8
WP_077904636.1\|2747375_2747684_+	hypothetical protein	NA	NA	NA	NA
WP_012986593.1\|2747710_2749165_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	3.6e-49	29.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_013891

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection