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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_013892 Xenorhabdus bovienii SS-2004, complete genome 6 crisprs DEDDh,DinG,RT,WYL,csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2 3 22 26 5

Results visualization

1. NC_013892
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013892_1 1439191-1439264 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013892_2 1500125-1500200 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013892_3 1506117-1506276 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013892_4 3619469-3620474 Orphan NA
16 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013892_5 3628576-3628909 TypeI-E NA
5 spacers
cas3,cas8e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_013892_6 3646437-3646891 TypeI-E NA
7 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_013892_3 3.1|1506170|54|NC_013892|CRISPRCasFinder 1506170-1506223 54 NC_013892.1 3291054-3291107 0 1.0
NC_013892_4 4.5|3619743|32|NC_013892|CRT,CRISPRCasFinder 3619743-3619774 32 NC_013892.1 31366-31397 0 1.0
NC_013892_4 4.21|3619749|33|NC_013892|PILER-CR 3619749-3619781 33 NC_013892.1 31365-31397 0 1.0
NC_013892_3 3.1|1506170|54|NC_013892|CRISPRCasFinder 1506170-1506223 54 NC_013892.1 3291161-3291214 2 0.963

1. spacer 3.1|1506170|54|NC_013892|CRISPRCasFinder matches to position: 3291054-3291107, mismatch: 0, identity: 1.0

gtgccccgggcacaccagtatgattttcaaccactgctgtctcaggcaatacgg	CRISPR spacer
gtgccccgggcacaccagtatgattttcaaccactgctgtctcaggcaatacgg	Protospacer
******************************************************

2. spacer 4.5|3619743|32|NC_013892|CRT,CRISPRCasFinder matches to position: 31366-31397, mismatch: 0, identity: 1.0

gccaatgcgaccgaccaactgaaaaaagcgaa	CRISPR spacer
gccaatgcgaccgaccaactgaaaaaagcgaa	Protospacer
********************************

3. spacer 4.21|3619749|33|NC_013892|PILER-CR matches to position: 31365-31397, mismatch: 0, identity: 1.0

gccaatgcgaccgaccaactgaaaaaagcgaaa	CRISPR spacer
gccaatgcgaccgaccaactgaaaaaagcgaaa	Protospacer
*********************************

4. spacer 3.1|1506170|54|NC_013892|CRISPRCasFinder matches to position: 3291161-3291214, mismatch: 2, identity: 0.963

gtgccccgggcacaccagtatgattttcaaccactgctgtctcaggcaatacgg	CRISPR spacer
gtgccccgggcacaccagtattatttttaaccactgctgtctcaggcaatacgg	Protospacer
********************* *****.**************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_013892_6 6.5|3646709|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3646709-3646740 32 NZ_CP031118 Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p1_000369, complete sequence 752-783 0 1.0
NC_013892_4 4.5|3619743|32|NC_013892|CRT,CRISPRCasFinder 3619743-3619774 32 LR134132 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12 24715-24746 2 0.938
NC_013892_4 4.21|3619749|33|NC_013892|PILER-CR 3619749-3619781 33 LR134132 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12 24715-24747 2 0.939
NC_013892_4 4.13|3620231|32|NC_013892|CRT,CRISPRCasFinder 3620231-3620262 32 NZ_CP041251 Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence 17730-17761 3 0.906
NC_013892_4 4.29|3620245|33|NC_013892|PILER-CR 3620245-3620277 33 NZ_CP041251 Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence 17730-17762 3 0.909
NC_013892_1 1.1|1439214|28|NC_013892|CRISPRCasFinder 1439214-1439241 28 MK504443 Lactobacillus phage 521B, complete genome 81993-82020 5 0.821
NC_013892_2 2.1|1500148|30|NC_013892|CRISPRCasFinder 1500148-1500177 30 NZ_CP021133 Pseudomonas fragi strain NMC25 plasmid unnamed1, complete sequence 25048-25077 5 0.833
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 CP016947 Yersinia enterocolitica strain YE1 plasmid unnamed2, complete sequence 78803-78834 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP016938 Yersinia enterocolitica strain YE6 plasmid unnamed1, complete sequence 56267-56298 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP016934 Yersinia enterocolitica strain YE7 plasmid unnamed1, complete sequence 3546-3577 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP016942 Yersinia enterocolitica strain YE3 plasmid unnamed1, complete sequence 14845-14876 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP016941 Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence 16478-16509 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP016941 Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence 117276-117307 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP016932 Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence 10003-10034 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP016932 Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence 120141-120172 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NC_010377 Yersinia enterocolitica plasmid pYE854, complete sequence 23195-23226 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP025801 Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence 68193-68224 6 0.812
NC_013892_5 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628605-3628636 32 NZ_CP011119 Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence 74508-74539 6 0.812
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038620 Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence 82899-82930 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038621 Arsenophonus nasoniae strain FIN plasmid pArsFIN9, complete sequence 43498-43529 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038622 Arsenophonus nasoniae strain FIN plasmid pArsFIN10, complete sequence 45171-45202 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 876-907 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 41013-41044 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 74983-75014 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 142094-142125 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 175272-175303 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 206510-206541 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 212124-212155 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038615 Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence 11734-11765 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038615 Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence 48507-48538 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038616 Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence 16199-16230 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038616 Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence 67433-67464 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038617 Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence 23076-23107 7 0.781
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP038617 Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence 87817-87848 7 0.781
NC_013892_4 4.9|3619987|32|NC_013892|CRT,CRISPRCasFinder 3619987-3620018 32 NZ_CP030220 Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence 124165-124196 7 0.781
NC_013892_4 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder 3620048-3620079 32 NZ_CP029793 Psychrobacter sp. YP14 plasmid pYP14d, complete sequence 7989-8020 7 0.781
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 NC_011780 Borreliella burgdorferi ZS7 plasmid ZS7_lp28-1, complete sequence 9961-9992 7 0.781
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 MH638312 Bacillus phage Kioshi, complete genome 84440-84471 7 0.781
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 NC_042140 Bacillus virus BM15, complete genome 83893-83924 7 0.781
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 MH638309 Bacillus phage Hobo, complete genome 83893-83924 7 0.781
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 KJ451625 Bacillus phage Bcp1, complete genome 84533-84564 7 0.781
NC_013892_4 4.25|3619997|33|NC_013892|PILER-CR 3619997-3620029 33 NZ_CP030220 Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence 124165-124197 7 0.788
NC_013892_2 2.1|1500148|30|NC_013892|CRISPRCasFinder 1500148-1500177 30 NZ_CP021133 Pseudomonas fragi strain NMC25 plasmid unnamed1, complete sequence 24995-25024 8 0.733
NC_013892_4 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder 3620048-3620079 32 NC_031095 Klebsiella phage PKO111, complete genome 39342-39373 8 0.75
NC_013892_4 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder 3620048-3620079 32 MN101230 Klebsiella phage KPN6, complete genome 137200-137231 8 0.75
NC_013892_4 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder 3620048-3620079 32 NC_031087 Klebsiella phage vB_KpnM_KpV477, complete genome 67872-67903 8 0.75
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 MN087708 Edwardsiella phage vB_EtaM-IME523, complete genome 121086-121117 8 0.75
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 NC_048849 Enterobacter phage vB_EclM_CIP9, complete genome 10740-10771 8 0.75
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038620 Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence 82899-82931 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038622 Arsenophonus nasoniae strain FIN plasmid pArsFIN10, complete sequence 45171-45203 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 74983-75015 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 175272-175304 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 206510-206542 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 212124-212156 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 875-907 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 41012-41044 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038614 Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence 142093-142125 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038615 Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence 11734-11766 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038615 Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence 48507-48539 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038616 Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence 16199-16231 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038616 Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence 67432-67464 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038617 Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence 87817-87849 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038617 Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence 23075-23107 8 0.758
NC_013892_4 4.18|3619563|33|NC_013892|PILER-CR 3619563-3619595 33 NZ_CP038621 Arsenophonus nasoniae strain FIN plasmid pArsFIN9, complete sequence 43497-43529 8 0.758
NC_013892_4 4.31|3620369|33|NC_013892|PILER-CR 3620369-3620401 33 NC_011780 Borreliella burgdorferi ZS7 plasmid ZS7_lp28-1, complete sequence 9961-9993 8 0.758
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_KX832928 Providencia rettgeri strain 06-1619 plasmid p06-1619-NDM, complete sequence 19355-19386 9 0.719
NC_013892_4 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder 3619560-3619591 32 NZ_CP047640 Proteus sp. ZN5 plasmid pZN5-103kb, complete sequence 30391-30422 9 0.719
NC_013892_4 4.3|3619621|32|NC_013892|CRT,CRISPRCasFinder 3619621-3619652 32 NZ_CP013139 Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence 665565-665596 9 0.719
NC_013892_4 4.3|3619621|32|NC_013892|CRT,CRISPRCasFinder 3619621-3619652 32 MT795651 Vibrio phage vB_VnaS-AQKL99, complete genome 19518-19549 9 0.719
NC_013892_4 4.5|3619743|32|NC_013892|CRT,CRISPRCasFinder 3619743-3619774 32 MN694529 Marine virus AFVG_250M1084, complete genome 31309-31340 9 0.719
NC_013892_4 4.9|3619987|32|NC_013892|CRT,CRISPRCasFinder 3619987-3620018 32 NC_011282 Klebsiella variicola strain 342 plasmid pKP187, complete sequence 169099-169130 9 0.719
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 MT028491 Ochrobactrum phage vB_OspM_OC, complete genome 64415-64446 9 0.719
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 NC_010363 Lactococcus phage asccphi28, complete genome 11570-11601 9 0.719
NC_013892_4 4.16|3620414|32|NC_013892|CRT,CRISPRCasFinder 3620414-3620445 32 NC_022884 Enterococcus mundtii QU 25 plasmid pQY024, complete sequence 10124-10155 9 0.719
NC_013892_4 4.31|3620369|33|NC_013892|PILER-CR 3620369-3620401 33 MT028491 Ochrobactrum phage vB_OspM_OC, complete genome 64414-64446 9 0.727
NC_013892_5 5.3|3628727|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3628727-3628758 32 NZ_CP054606 Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed7, complete sequence 13148-13179 9 0.719
NC_013892_6 6.6|3646770|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT 3646770-3646801 32 KT271770 Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence 3389-3420 9 0.719
NC_013892_4 4.4|3619682|32|NC_013892|CRT,CRISPRCasFinder 3619682-3619713 32 MF668281 Mycobacterium phage RitaG, complete genome 18757-18788 10 0.688
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 NZ_CP019923 Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence 14417-14448 10 0.688
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 NZ_CP019762 Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp28-1 12552-12583 10 0.688
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 NC_001851 Borreliella burgdorferi B31 plasmid lp28-1, complete sequence 13710-13741 10 0.688
NC_013892_4 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder 3620353-3620384 32 AP014367 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, *** SEQUENCING IN PROGRESS *** 6081-6112 10 0.688
NC_013892_4 4.32|3620431|33|NC_013892|PILER-CR 3620431-3620463 33 NC_022884 Enterococcus mundtii QU 25 plasmid pQY024, complete sequence 10123-10155 10 0.697
NC_013892_4 4.7|3619865|32|NC_013892|CRT,CRISPRCasFinder 3619865-3619896 32 NZ_LR699074 Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2 31404-31435 11 0.656
NC_013892_4 4.31|3620369|33|NC_013892|PILER-CR 3620369-3620401 33 NZ_CP019923 Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence 14417-14449 11 0.667
NC_013892_4 4.31|3620369|33|NC_013892|PILER-CR 3620369-3620401 33 NZ_CP019762 Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp28-1 12552-12584 11 0.667
NC_013892_4 4.31|3620369|33|NC_013892|PILER-CR 3620369-3620401 33 NC_001851 Borreliella burgdorferi B31 plasmid lp28-1, complete sequence 13709-13741 11 0.667

1. spacer 6.5|3646709|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031118 (Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p1_000369, complete sequence) position: , mismatch: 0, identity: 1.0

tctattgagcgtccagcactgagtttattgtc	CRISPR spacer
tctattgagcgtccagcactgagtttattgtc	Protospacer
********************************

2. spacer 4.5|3619743|32|NC_013892|CRT,CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 2, identity: 0.938

gccaatgcgaccgaccaactgaaaaaagcgaa	CRISPR spacer
gccaacgcgaccgaccagctgaaaaaagcgaa	Protospacer
*****.***********.**************

3. spacer 4.21|3619749|33|NC_013892|PILER-CR matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 2, identity: 0.939

gccaatgcgaccgaccaactgaaaaaagcgaaa	CRISPR spacer
gccaacgcgaccgaccagctgaaaaaagcgaaa	Protospacer
*****.***********.***************

4. spacer 4.13|3620231|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP041251 (Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.906

acgttgggcgcgttcaaagtgccgtgttagga	CRISPR spacer
acgtggggcgcgtacaaagtgccgtgttaggt	Protospacer
**** ******** ***************** 

5. spacer 4.29|3620245|33|NC_013892|PILER-CR matches to NZ_CP041251 (Raoultella electrica strain DSM 102253 plasmid unnamed4, complete sequence) position: , mismatch: 3, identity: 0.909

acgttgggcgcgttcaaagtgccgtgttaggac	CRISPR spacer
acgtggggcgcgtacaaagtgccgtgttaggtc	Protospacer
**** ******** ***************** *

6. spacer 1.1|1439214|28|NC_013892|CRISPRCasFinder matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 5, identity: 0.821

gtcaaaggtagataatacattttgaatt	CRISPR spacer
atcaaatgtagataataaattttgagct	Protospacer
.***** ********** *******..*

7. spacer 2.1|1500148|30|NC_013892|CRISPRCasFinder matches to NZ_CP021133 (Pseudomonas fragi strain NMC25 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

tgtac-ttctgtttggaggtttctgtttttt	CRISPR spacer
-gtgctttctgtttggagatttcttttttta	Protospacer
 **.* ************.***** ***** 

8. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to CP016947 (Yersinia enterocolitica strain YE1 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

9. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016938 (Yersinia enterocolitica strain YE6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

10. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016934 (Yersinia enterocolitica strain YE7 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

11. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016942 (Yersinia enterocolitica strain YE3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

12. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016941 (Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

13. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016941 (Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

14. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016932 (Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

15. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016932 (Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

16. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NC_010377 (Yersinia enterocolitica plasmid pYE854, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

17. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025801 (Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

18. spacer 5.1|3628605|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011119 (Yersinia enterocolitica strain FORC_002 plasmid pFORC2, complete sequence) position: , mismatch: 6, identity: 0.812

acacaaatgagtatcgatttagtgcatgcaca	CRISPR spacer
acggtaaaaagtatcaatttagtgcatgcaca	Protospacer
**.  ** .******.****************

19. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038620 (Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

20. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038621 (Arsenophonus nasoniae strain FIN plasmid pArsFIN9, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

21. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038622 (Arsenophonus nasoniae strain FIN plasmid pArsFIN10, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

22. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

23. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

24. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

25. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

26. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

27. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

28. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

29. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038615 (Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

30. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038615 (Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

31. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038616 (Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

32. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038616 (Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

33. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038617 (Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

34. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP038617 (Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence) position: , mismatch: 7, identity: 0.781

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattg	Protospacer
* *..*******.******** ******* * 

35. spacer 4.9|3619987|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 7, identity: 0.781

-tatattctgccctttaacttcttcttccctgt	CRISPR spacer
acagatgat-cccttcaacatcttcttccctgt	Protospacer
 .* **  * *****.*** *************

36. spacer 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP029793 (Psychrobacter sp. YP14 plasmid pYP14d, complete sequence) position: , mismatch: 7, identity: 0.781

aaacccacgtttgatattttcctcattagttt	CRISPR spacer
aactctgattttgatattttccccattagttt	Protospacer
** .*..  *************.*********

37. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to NC_011780 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-1, complete sequence) position: , mismatch: 7, identity: 0.781

----caaaatcaaatgcattagccattatttttagc	CRISPR spacer
ttggcaa----aagtgcattagcaattatttttagt	Protospacer
    ***    **.********* ***********.

38. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to MH638312 (Bacillus phage Kioshi, complete genome) position: , mismatch: 7, identity: 0.781

caaaatcaaatgcattagccattatttttagc--	CRISPR spacer
ctaactcaaatgctttagccatta--tgtaactg	Protospacer
* ** ******** **********  * **.*  

39. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to NC_042140 (Bacillus virus BM15, complete genome) position: , mismatch: 7, identity: 0.781

caaaatcaaatgcattagccattatttttagc--	CRISPR spacer
ctaactcaaatgctttagccatta--tgtaactg	Protospacer
* ** ******** **********  * **.*  

40. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to MH638309 (Bacillus phage Hobo, complete genome) position: , mismatch: 7, identity: 0.781

caaaatcaaatgcattagccattatttttagc--	CRISPR spacer
ctaactcaaatgctttagccatta--tgtaactg	Protospacer
* ** ******** **********  * **.*  

41. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to KJ451625 (Bacillus phage Bcp1, complete genome) position: , mismatch: 7, identity: 0.781

caaaatcaaatgcattagccattatttttagc--	CRISPR spacer
ctaactcaaatgctttagccatta--tgtaactg	Protospacer
* ** ******** **********  * **.*  

42. spacer 4.25|3619997|33|NC_013892|PILER-CR matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 7, identity: 0.788

-tatattctgccctttaacttcttcttccctgtc	CRISPR spacer
acagatgat-cccttcaacatcttcttccctgtc	Protospacer
 .* **  * *****.*** **************

43. spacer 2.1|1500148|30|NC_013892|CRISPRCasFinder matches to NZ_CP021133 (Pseudomonas fragi strain NMC25 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tgtacttctgtttggaggtttctgtttttt	CRISPR spacer
cagctttctgtttggagatttcttttttta	Protospacer
..  .************.***** ***** 

44. spacer 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder matches to NC_031095 (Klebsiella phage PKO111, complete genome) position: , mismatch: 8, identity: 0.75

aaacccacg-tttgatattttcctcattagttt	CRISPR spacer
-agcatatactttcatattttcctcattaattt	Protospacer
 *.* .*.. *** ***************.***

45. spacer 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder matches to MN101230 (Klebsiella phage KPN6, complete genome) position: , mismatch: 8, identity: 0.75

aaacccacg-tttgatattttcctcattagttt	CRISPR spacer
-agcatatactttcatattttcctcattaattt	Protospacer
 *.* .*.. *** ***************.***

46. spacer 4.10|3620048|32|NC_013892|CRT,CRISPRCasFinder matches to NC_031087 (Klebsiella phage vB_KpnM_KpV477, complete genome) position: , mismatch: 8, identity: 0.75

aaacccacg-tttgatattttcctcattagttt	CRISPR spacer
-agcatatactttcatattttcctcattaattt	Protospacer
 *.* .*.. *** ***************.***

47. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to MN087708 (Edwardsiella phage vB_EtaM-IME523, complete genome) position: , mismatch: 8, identity: 0.75

caaaatcaaatgcattagccatt-----atttttagc	CRISPR spacer
caaaatcaaatgcaataggcatttctaaatct-----	Protospacer
************** *** ****     **.*     

48. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to NC_048849 (Enterobacter phage vB_EclM_CIP9, complete genome) position: , mismatch: 8, identity: 0.75

caaaatcaaatgcattagccatt-----atttttagc	CRISPR spacer
caaaatcaaatgcaataggcatttctaaatct-----	Protospacer
************** *** ****     **.*     

49. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038620 (Arsenophonus nasoniae strain FIN plasmid pArsFIN8, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

50. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038622 (Arsenophonus nasoniae strain FIN plasmid pArsFIN10, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

51. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

52. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

53. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

54. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

55. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

56. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

57. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

58. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038615 (Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

59. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038615 (Arsenophonus nasoniae strain FIN plasmid pArsFIN3, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

60. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038616 (Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

61. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038616 (Arsenophonus nasoniae strain FIN plasmid pArsFIN4, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

62. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038617 (Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

63. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038617 (Arsenophonus nasoniae strain FIN plasmid pArsFIN5, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

64. spacer 4.18|3619563|33|NC_013892|PILER-CR matches to NZ_CP038621 (Arsenophonus nasoniae strain FIN plasmid pArsFIN9, complete sequence) position: , mismatch: 8, identity: 0.758

tgagggaaaatcagtttccagttgtcatagttc	CRISPR spacer
ttaaagaaaatcggtttccaggtgtcatattga	Protospacer
* *..*******.******** ******* *  

65. spacer 4.31|3620369|33|NC_013892|PILER-CR matches to NC_011780 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-1, complete sequence) position: , mismatch: 8, identity: 0.758

----caaaatcaaatgcattagccattatttttagcc	CRISPR spacer
ttggcaa----aagtgcattagcaattatttttagtt	Protospacer
    ***    **.********* ***********..

66. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_KX832928 (Providencia rettgeri strain 06-1619 plasmid p06-1619-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttgaaaaaaatcggtttccaggtgtcatattg	Protospacer
* ....******.******** ******* * 

67. spacer 4.2|3619560|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP047640 (Proteus sp. ZN5 plasmid pZN5-103kb, complete sequence) position: , mismatch: 9, identity: 0.719

tgagggaaaatcagtttccagttgtcatagtt	CRISPR spacer
ttgaaaaaaatcggtttccaggtgtcatattg	Protospacer
* ....******.******** ******* * 

68. spacer 4.3|3619621|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

tttgtatcgatagtgaaaactcagtagggcct	CRISPR spacer
ctcctatcgatagtgaagactcactagttagt	Protospacer
.*. *************.***** ***    *

69. spacer 4.3|3619621|32|NC_013892|CRT,CRISPRCasFinder matches to MT795651 (Vibrio phage vB_VnaS-AQKL99, complete genome) position: , mismatch: 9, identity: 0.719

tttgtatcgatagtgaaaactcagtagggcct	CRISPR spacer
aacgtagcgacagtgaaaactcagtacgctcg	Protospacer
  .*** ***.*************** * .* 

70. spacer 4.5|3619743|32|NC_013892|CRT,CRISPRCasFinder matches to MN694529 (Marine virus AFVG_250M1084, complete genome) position: , mismatch: 9, identity: 0.719

gccaatgcgaccgaccaactgaaaaaagcgaa	CRISPR spacer
ctcaatgcgaccgccaaactgaaaaggccgcc	Protospacer
 .*********** * *********.. **  

71. spacer 4.9|3619987|32|NC_013892|CRT,CRISPRCasFinder matches to NC_011282 (Klebsiella variicola strain 342 plasmid pKP187, complete sequence) position: , mismatch: 9, identity: 0.719

tatattctgccctttaacttcttcttccctgt	CRISPR spacer
aaccatcttccctttaacttctttttcctcga	Protospacer
 *.  *** **************.****..* 

72. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to MT028491 (Ochrobactrum phage vB_OspM_OC, complete genome) position: , mismatch: 9, identity: 0.719

-------caaaatcaaatgcattagccattatttttagc	CRISPR spacer
gccttggc-------aattcattagccattattttgagc	Protospacer
       *       *** **************** ***

73. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to NC_010363 (Lactococcus phage asccphi28, complete genome) position: , mismatch: 9, identity: 0.719

caaaatcaaatgcattagccattatttttagc	CRISPR spacer
gatatgcaaatgctttatccattattttttca	Protospacer
 * *  ******* *** ***********   

74. spacer 4.16|3620414|32|NC_013892|CRT,CRISPRCasFinder matches to NC_022884 (Enterococcus mundtii QU 25 plasmid pQY024, complete sequence) position: , mismatch: 9, identity: 0.719

tttacgcacagaaattttttctctggatgatc	CRISPR spacer
agagcgtacagcaattttttctctggatactt	Protospacer
   .**.**** ****************. *.

75. spacer 4.31|3620369|33|NC_013892|PILER-CR matches to MT028491 (Ochrobactrum phage vB_OspM_OC, complete genome) position: , mismatch: 9, identity: 0.727

-------caaaatcaaatgcattagccattatttttagcc	CRISPR spacer
gccttggc-------aattcattagccattattttgagcc	Protospacer
       *       *** **************** ****

76. spacer 5.3|3628727|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054606 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaactgtcaaagaaatgtagcgccattcc	CRISPR spacer
acgcctatgtcaaagagatgaagcgccattac	Protospacer
.*.    *********.*** ********* *

77. spacer 6.6|3646770|32|NC_013892|PILER-CR,CRISPRCasFinder,CRT matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 9, identity: 0.719

gtaatgccggattaaaaacggggattgaaatt	CRISPR spacer
aaatggccggattaaaaacaaggattgataag	Protospacer
. *  **************..******* *  

78. spacer 4.4|3619682|32|NC_013892|CRT,CRISPRCasFinder matches to MF668281 (Mycobacterium phage RitaG, complete genome) position: , mismatch: 10, identity: 0.688

atgacgttcaacatttggcggaagatctagag	CRISPR spacer
gacctgttcaacattttgcgggagatctcgtc	Protospacer
.   .*********** ****.****** *  

79. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP019923 (Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

caaaatcaaatgcattagccattatttttagc	CRISPR spacer
ttggtaaaagtgcattagcaattatttttagt	Protospacer
. ..   **.********* ***********.

80. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_CP019762 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp28-1) position: , mismatch: 10, identity: 0.688

caaaatcaaatgcattagccattatttttagc	CRISPR spacer
ttggtaaaagtgcattagcaattatttttagt	Protospacer
. ..   **.********* ***********.

81. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to NC_001851 (Borreliella burgdorferi B31 plasmid lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

caaaatcaaatgcattagccattatttttagc	CRISPR spacer
ttggtaaaagtgcattagcaattatttttagt	Protospacer
. ..   **.********* ***********.

82. spacer 4.15|3620353|32|NC_013892|CRT,CRISPRCasFinder matches to AP014367 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

caaaatcaaatgcattagccattatttttagc	CRISPR spacer
ttggatcaaatgttttagccattatttatttt	Protospacer
. ..********. ************* *  .

83. spacer 4.32|3620431|33|NC_013892|PILER-CR matches to NC_022884 (Enterococcus mundtii QU 25 plasmid pQY024, complete sequence) position: , mismatch: 10, identity: 0.697

tttacgcacagaaattttttctctggatgatcc	CRISPR spacer
agagcgtacagcaattttttctctggatacttt	Protospacer
   .**.**** ****************. *..

84. spacer 4.7|3619865|32|NC_013892|CRT,CRISPRCasFinder matches to NZ_LR699074 (Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2) position: , mismatch: 11, identity: 0.656

ttgatttcgacccgcaacccctctgaaaatgc	CRISPR spacer
agtgcatcgacccgcaaccccttggaaaagct	Protospacer
   .. ****************. *****  .

85. spacer 4.31|3620369|33|NC_013892|PILER-CR matches to NZ_CP019923 (Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence) position: , mismatch: 11, identity: 0.667

caaaatcaaatgcattagccattatttttagcc	CRISPR spacer
ttggtaaaagtgcattagcaattatttttagtt	Protospacer
. ..   **.********* ***********..

86. spacer 4.31|3620369|33|NC_013892|PILER-CR matches to NZ_CP019762 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp28-1) position: , mismatch: 11, identity: 0.667

caaaatcaaatgcattagccattatttttagcc	CRISPR spacer
ttggtaaaagtgcattagcaattatttttagtt	Protospacer
. ..   **.********* ***********..

87. spacer 4.31|3620369|33|NC_013892|PILER-CR matches to NC_001851 (Borreliella burgdorferi B31 plasmid lp28-1, complete sequence) position: , mismatch: 11, identity: 0.667

caaaatcaaatgcattagccattatttttagcc	CRISPR spacer
ttggtaaaagtgcattagcaattatttttagtt	Protospacer
. ..   **.********* ***********..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 92786 : 150603 57 Paramecium_bursaria_Chlorella_virus(50.0%) protease,transposase NA
DBSCAN-SWA_2 218874 : 275349 43 Planktothrix_phage(33.33%) plate,transposase,tRNA NA
DBSCAN-SWA_3 562584 : 642507 60 Chrysodeixis_includens_nucleopolyhedrovirus(10.0%) protease,transposase,integrase,plate,tRNA attL 608205:608219|attR 645558:645572
DBSCAN-SWA_4 650013 : 791485 113 Morganella_phage(16.98%) protease,tail,transposase,capsid,holin,head,portal,integrase,terminase,lysis attL 743507:743566|attR 756380:757278
DBSCAN-SWA_5 808012 : 876100 60 Streptococcus_phage(14.29%) transposase,integrase,tRNA attL 820021:820038|attR 865006:865023
DBSCAN-SWA_6 902895 : 913214 9 Bacillus_phage(33.33%) protease,tRNA NA
DBSCAN-SWA_7 937859 : 1032374 90 Cronobacter_phage(47.62%) protease,tail,capsid,holin,head,portal,integrase,tRNA,plate,terminase,lysis attL 965911:965926|attR 991311:991326
DBSCAN-SWA_8 1082783 : 1167173 39 Escherichia_phage(30.0%) plate,transposase,integrase,tRNA attL 1113343:1113402|attR 1125997:1126446
DBSCAN-SWA_9 1185320 : 1393892 222 Morganella_phage(17.5%) protease,transposase,tail,capsid,holin,head,portal,integrase,plate,terminase,lysis attL 1294105:1294164|attR 1392815:1392833
DBSCAN-SWA_10 1417745 : 1484250 51 Vibrio_phage(33.33%) plate,transposase,integrase attL 1435204:1435219|attR 1492224:1492239
DBSCAN-SWA_11 1513286 : 1550672 26 Leptospira_phage(40.0%) protease,transposase,integrase attL 1508359:1508374|attR 1518025:1518040
DBSCAN-SWA_12 1671623 : 1719496 42 Escherichia_phage(21.43%) protease,transposase,tRNA NA
DBSCAN-SWA_13 1735840 : 1742794 8 Escherichia_phage(33.33%) integrase attL 1741108:1741124|attR 1749483:1749499
DBSCAN-SWA_14 1785155 : 1832612 39 Escherichia_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_15 1965085 : 2059289 99 Escherichia_phage(24.0%) protease,transposase,tail,capsid,holin,head,portal,integrase,plate,terminase,lysis attL 1976084:1976143|attR 2051039:2051820
DBSCAN-SWA_16 2309661 : 2367965 38 Virus_Rctr85(16.67%) protease,transposase,integrase attL 2307368:2307383|attR 2357489:2357504
DBSCAN-SWA_17 2511024 : 2635200 111 Escherichia_phage(24.24%) protease,tail,transposase,integrase,plate,tRNA attL 2584320:2584379|attR 2635053:2635252
DBSCAN-SWA_18 2692483 : 2760633 53 Bacillus_phage(27.27%) transposase,integrase,tRNA attL 2731033:2731092|attR 2762096:2763204
DBSCAN-SWA_19 2991165 : 3118345 111 Escherichia_phage(13.33%) transposase,tail,tRNA NA
DBSCAN-SWA_20 3173793 : 3240501 52 Escherichia_phage(21.43%) holin,transposase,tRNA NA
DBSCAN-SWA_21 3271845 : 3320087 52 Escherichia_phage(55.56%) transposase,integrase,tRNA attL 3276902:3276961|attR 3319363:3320146
DBSCAN-SWA_22 3481818 : 3491375 8 uncultured_Mediterranean_phage(28.57%) transposase NA
DBSCAN-SWA_23 3590488 : 3665754 60 Escherichia_phage(21.43%) transposase,tRNA NA
DBSCAN-SWA_24 3720546 : 3785336 54 Escherichia_phage(27.27%) protease,holin,transposase NA
DBSCAN-SWA_25 3792710 : 3834048 51 Morganella_phage(30.56%) protease,tail,transposase,capsid,holin,head,portal,integrase,terminase,tRNA attL 3780905:3780919|attR 3825386:3825400
DBSCAN-SWA_26 4183316 : 4195468 14 Morganella_phage(40.0%) integrase,capsid attL 4177267:4177281|attR 4192539:4192553
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_013892.1|WP_012989716.1|3279243_3279570_-|hypothetical-protein 3279243_3279570_- 108 aa aa NA NA NA 3271845-3320087 yes
NC_013892.1|WP_012988021.1|3312581_3313055_+|hypothetical-protein 3312581_3313055_+ 157 aa aa NA NA NA 3271845-3320087 yes
NC_013892.1|WP_012989749.1|3316596_3317388_-|hypothetical-protein 3316596_3317388_- 263 aa aa NA NA NA 3271845-3320087 yes
NC_013892.1|WP_012989752.1|3320385_3320904_+|hypothetical-protein 3320385_3320904_+ 172 aa aa NA NA NA No NA
NC_013892.1|WP_012989756.1|3323142_3323454_+|hypothetical-protein 3323142_3323454_+ 103 aa aa NA NA NA No NA