CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_004459	Vibrio vulnificus CMCP6 chromosome I, complete sequence	1 crisprs	csa3,DinG,cas3,DEDDh,WYL,csx1	0	0	3	0
NC_004460	Vibrio vulnificus CMCP6 chromosome II, complete sequence	0 crisprs	cas3,csa3,WYL,DEDDh	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_004459_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_004459_1

453876-453952

Orphan

Consensus_repeat	Method
CTATGGGGTGGCCCAACTGACGATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_004459_1

>merge|NC_004459|1|453876-453952|CRISPRCasFinder
CTATGGGGTGGCCCAACTGACGATGGCAATACTCCAGATCGTCAACCGCCACTATGGGGTGGCCCAACTGACGATGG

>NC_004459|1|1|453876-453952|CRISPRCasFinder
CTATGGGGTGGCCCAACTGACGATGG	CAATACTCCAGATCGTCAACCGCCA
CTATGGGGTGGCCCAACTGACGATGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_004459.3\|WP_011078564.1\|464932_465886_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	unknown	unknown	gnl\|CDD\|270371
NC_004459.3\|WP_011078550.1\|448989_449895_-\|hydrogen-peroxide-inducible-genes-activator	unknown	unknown	gnl\|CDD\|176103
NC_004459.3\|WP_011078563.1\|463381_464881_+\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|182781
NC_004459.3\|WP_011078548.1\|445306_446620_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
NC_004459.3\|WP_011078559.1\|456387_457206_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184582
NC_004459.3\|WP_011078551.1\|450092_450701_+\|peroxiredoxin-C	unknown	unknown	gnl\|CDD\|184962
NC_004459.3\|WP_011078553.1\|451768_452545_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NC_004459.3\|WP_011078561.1\|458905_461098_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226956
NC_004459.3\|WP_011078554.1\|452555_453497_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_004459.3\|WP_011078546.1\|443315_444518_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|214473
NC_004459.3\|WP_011078557.1\|455187_455661_+\|hypothetical-protein	unknown	unknown	unknown
NC_004459.3\|WP_011078556.1\|454383_455058_+\|hypothetical-protein	unknown	unknown	unknown
NC_004459.3\|WP_011078552.1\|450962_451715_+\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NC_004459.3\|WP_011078565.1\|465882_467181_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NC_004459.3\|WP_011078558.1\|455664_456363_-\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|182974
NC_004459.3\|WP_011078560.1\|457207_458878_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NC_004459.3\|WP_011078562.1\|461295_463398_+\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|274734
NC_004459.3\|WP_011078547.1\|444743_445199_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341361
NC_004459.3\|WP_043921073.1\|446747_448382_-\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NC_004459.3\|WP_011078545.1\|442046_443099_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666

Protein	Function_ID	Function_description	E-value
NC_004459.3\|WP_011078564.1\|464932_465886_-\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.82063e-78
NC_004459.3\|WP_011078550.1\|448989_449895_-\|hydrogen-peroxide-inducible-genes-activator	gnl\|CDD\|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.48179e-82
NC_004459.3\|WP_011078563.1\|463381_464881_+\|exopolyphosphatase	gnl\|CDD\|182781	PRK10854, PRK10854, exopolyphosphatase; Provisional.	0
NC_004459.3\|WP_011078548.1\|445306_446620_-\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
NC_004459.3\|WP_011078559.1\|456387_457206_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184582	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional.	0
NC_004459.3\|WP_011078551.1\|450092_450701_+\|peroxiredoxin-C	gnl\|CDD\|184962	PRK15000, PRK15000, peroxiredoxin C.	8.79742e-117
NC_004459.3\|WP_011078553.1\|451768_452545_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	3.57201e-156
NC_004459.3\|WP_011078561.1\|458905_461098_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226956	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_004459.3\|WP_011078554.1\|452555_453497_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.01851e-27
NC_004459.3\|WP_011078546.1\|443315_444518_-\|trypsin-like-serine-protease	gnl\|CDD\|214473	smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.	7.45918e-38
NC_004459.3\|WP_011078558.1\|455664_456363_-\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|182974	PRK11115, PRK11115, phosphate signaling complex protein PhoU.	2.04973e-157
NC_004459.3\|WP_011078552.1\|450962_451715_+\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	3.57602e-104
NC_004459.3\|WP_011078565.1\|465882_467181_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NC_004459.3\|WP_011078560.1\|457207_458878_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.06668e-86
NC_004459.3\|WP_011078562.1\|461295_463398_+\|polyphosphate-kinase-1	gnl\|CDD\|274734	TIGR03705, poly_P_kin, polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. [Central intermediary metabolism, Phosphorus compounds].	0
NC_004459.3\|WP_011078547.1\|444743_445199_+\|CBS-domain-containing-protein	gnl\|CDD\|341361	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain. The putative Acetoin Utilization Protein (Acub) from Vibrio Cholerae contains a CBS pair domain. The acetoin utilization protein plays a role in growth and sporulation on acetoin or butanediol for use as a carbon source. Acetoin is an important physiological metabolite excreted by many microorganisms. It is used as an external energy store by a number of fermentive bacteria. Acetoin is produced by the decarboxylation of alpha-acetolactate. Once superior carbon sources are exhausted, and the culture enters stationary phase, acetoin can be utilised in order to maintain the culture density. The conversion of acetoin into acetyl-CoA or 2,3-butanediol is catalysed by the acetoin dehydrogenase complex and acetoin reductase/2,3-butanediol dehydrogenase, respectively. Acetoin utilization proteins, acetylpolyamine amidohydrolases, and histone deacetylases are members of an ancient protein superfamily.This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT (aspartate kinase/chorismate mutase/TyrA) domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.25416e-45
NC_004459.3\|WP_043921073.1\|446747_448382_-\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NC_004459.3\|WP_011078545.1\|442046_443099_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0

>NC_004459.3|WP_011078554.1|452555_453497_+|LysR-family-transcriptional-regulator
MAKDLFYSLDLNLLRTFMVLYQEKNMRKASKRLFVSQPAISQALQKLRHHFGDELFVKVPTGLEATPFTETVLTAITPHLDGLASALNQTYEFNPIELSGRIKIALSPIVMASLTGALFTRFITQAPNCTIELVGWNKDTFTNIQQGTIDFGVNLEQDIPQNISCKKLVELTGKLIVRRDHPIDKQTVTAKDLEPYPIASIITPGWNDNFTHAAQLMEKEGATPTVGFRSEIILAVIDIVQHTNYFMPHSNLFPLAQYPNLRALDILVAGRPFMHGVFSYYHSRNRNNPLMHWIHHEINAVLEKQLSDNLRLS
>NC_004459.3|WP_011078553.1|451768_452545_+|polyphosphate-kinase-2
MGKLKKKFYEQELENLQIELVKLQEWVKHKKLKVVVIFEGRDAAGKGGVIKRITEKLNPRVCRIAALPAPTEKEKTQWYFQRYVAHLPAGGEIVLFDRSWYNRAGVEKVMGFCSEEEYEEFLRSCPEFERMLQRSGIILLKYWFSVSDEEQEKRFIERINTPIKRWKFSPMDLESRNRWAEYSKAKDEMFAYTDTKYCPWWVVPSDDKRRARLNCISHLLSSIDYQDVVHPPVTLPELNKEGYVRSPVDEQTFVPFKY
>NC_004459.3|WP_011078552.1|450962_451715_+|copper-homeostasis-protein-CutC
MSYQVEVCIDNIESLHNALEGGATRIELCSSLALGGLTPSYGFMTLAAKLSTVPIYAMIRPRQGDFLYSDDEFAIMQQDILSAQQAGLQGVVFGLLTADGDIDVARTRILVELAHSLQLGVTFHRAFDQCREPFAALEQIIDLGCERILTSGLAASAPLGKEILTQLVAHSQSRLAIMAGAGVSPVNVADLALTTGVKEVHLSGKSTRPSKMTFIASDSKMGAADQDDFIIPITHTATIRNTVLALKSIS
>NC_004459.3|WP_011078551.1|450092_450701_+|peroxiredoxin-C
MVLVGRQAPDFTAAAVLGNGEIVDNFNFAEFTKGKKAVVFFYPLDFTFVCPSELIAFDNRYEDFKAKGVEVIGVSIDSQFSHNAWRNTPVENGGIGQVKYPLIADVKHEICQAYDVEHPEAGVAFRGSFLIDEDGLVRHQVVNDLPLGRNIDEMLRMVDALNFHQKHGEVCPAQWEEGKAGMDASPQGVAAFLSEHAADLKK
>NC_004459.3|WP_011078550.1|448989_449895_-|hydrogen-peroxide-inducible-genes-activator
MNKWPSLKQLHYLITLHETRHFSDAAERCFVSQSTLSKGIQNLEELIGCPLYEKKDKKSPLVFTQAGELVVMHGRELLAKGQDLVELGSLCQGDSMQGQLKLGCIPTIAPFLLCDLVQEINQRFPQLNLLLREDTTTNLLTALRHGELDVLILALPVEIDGMESRVVGQDPFKMVISRHQAGAIKVPIKYDDLPDESVFLLEKEHCLTEHAVSACKLTDKEKINPFSATSLHTLVQMVANGLGTTFIPQMAIDHGLLDNQNLVVIEPPGQQAYRDIGLVWRPSSSRSKTFNQLAEVVSELL
>NC_004459.3|WP_043921073.1|446747_448382_-|malate-synthase-A
MLAQTPEKENTQAEQQTQGMLEVTGTLSPEHQAIFPVEAQTFLSQLCERFSLRVDQLLTAREERQNKIDQGELPDFLTETQDIREGSWKILGIPNDLQDRRVEITGPTDRKMVINALNANVKVFMADFEDSMSPAWDKVLDGQINLRDAVNGTISYSNPDNGKHYQLGNDPAVLICRVRGLHLKEKHVTWRGQIIPGSLFDFALYFFNNHKALLKKGSGPYFYLPKLQSHHEAKWWSEVFHFTEEYFGLDTGTIKATVLIETLPAVFEMDEILFSLKEHIVGLNCGRWDYIFSYIKTLKKHPDRVLPDRQVVTMDKPFLNAYSRLLVRTCHKRGAFAMGGMAAFIPAKDPQENQKVLDKIQNDKSLEASNGHDGTWVAHPGLADTAMDVFNRALGERKNQLDVTRQDDAPITAKQLLEPCDGARTEQGMRHNIRVALQYIEAWISGNGCVPIYGLMEDAATAEISRASIWQWIQHSKSLDNGEVVTKALFKRYLDEEIQVVKQEVGETRFDSGRFHEAAELMASLTTSDELTNFLTVPGYDYLD
>NC_004459.3|WP_011078548.1|445306_446620_-|isocitrate-lyase
MTNLTRRQQIEALEKDWATNPRWKNVKRTYTAEEVVALRGSMVPANTIAQRGADKLWSLVNGSSKKGYVNCLGALTGGQAVQQAKAGIEAIYLSGWQVAADNNTASTMYPDQSLYPVDSVPSVVKRINNSFRRADQIQWSNGKSPEEGGIDYFLPIVADAEAGFGGVLNAYELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTQEAVQKLVAARLAADVAGTTTLVIARTDANAADLLTSDCDPYDADFIVGERTQEGFYRVRAGIDQAISRGLAYAPYADLIWCETATPCLEEARKFAEAIHAEYPDQLLAYNCSPSFNWEKNLDAETIAKFQQELADMGYKYQFITLAGIHNMWFNMFELAHAYAQGEGMRHYVEKVQRPEFEAAEKGYTFVAHQQEVGTGYFDKMTNTIQGGNSSVTALTGSTEEDQFH
>NC_004459.3|WP_011078547.1|444743_445199_+|CBS-domain-containing-protein
MIKVEDMMTRHPHTLLRSHTLGDAKNMMEALDIRHIPVVDANKQLLGIVTQRDLLSAQESSLHKSSAENSYTTATPLYEVMHTSIMTVEPKAGLKESAIYMQKHKVGCLPVVEKGHLVGIITDTDFVTIAINLLELQEEAEPEELEVEDDL
>NC_004459.3|WP_011078546.1|443315_444518_-|trypsin-like-serine-protease
MVFIMWKKTVLLSGMLAISSGAQAIIMGEADPDATYRVTIRASNMAEFPICGGTVVAPRWVLTAAHCVVMGEGTNVASYYVTKPSEISVTARTPDLNSSTTDNYFTVSHVVVHPKYTRLTEYKKNNDDSYTLVSTSLDSDVALLYLDRPVTGAPLSDLPTAAEMSEIESRLNKEWDDEFATNVRVKNVTASGWGATVADASTPAITLQKTQLTYLPIANCYQRLELGNHLPGIIEAPTNVTKICTMPNEVLPWQPDERTQYGNNVCKGDSGGPLIDDVTGKQIGIVSGIPLITPICASVTQPSFYTRVSNYYDWIQSYITAANPPSSHILKPDFILNAGSGGDGGSGGDNGNGTGGNGEGCHGGISTNSCSFSGTAEGGSLGALTLLALFVLGRYRRKVA
>NC_004459.3|WP_011078545.1|442046_443099_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MQVSDFHFDLPDELIARYPQSERTASRLLQLNGNTGAVKDGSFKDVLELVQAGDLLVFNNTRVIPARMFGRKESGGKLEVLVERMLDEKRFLAHVRSSKSPKPGTLVFLGEEDQYSAEMVARQDALFELHLKADKTILEVLEEIGHMPLPPYIDRPDEDADKERYQTVYNQKPGAVAAPTAGLHFDNQLLEQIKAKGAEFAYVTLHVGAGTFQPVKVDNILEHHMHSEYAEVPQEVVDAINATKARGGRVIAVGTTSVRSLESAAQESLKNGTELMPFFGDTEIFIFPGYQYQLVDCLITNFHLPESTLIMLVSAFAGYDHTMNAYQHAVSNQYRFFSYGDAMFIEKKTQ
>NC_004459.3|WP_011078556.1|454383_455058_+|hypothetical-protein
MSKKAMAFCCLVISEAVQAGFSVSIEKDLIELGVSAAVTDKSYLYIGADSNEWLGIGVGYQHRLSSQWTANAYYEFGLEDDWLMNDALEVDGVKTKSHFLDFSTTHRFDDYSTKLGITGEFTRNGFTWITVDDSDKYSMYASVARYFQSLYVTGRYEHHYAIDRSDMIDFNQGHANEWEFSIGTMRSIWKIYPYLKANILSPNGTYYGSQSTNVSWSMGGTISF
>NC_004459.3|WP_011078557.1|455187_455661_+|hypothetical-protein
MKKMAIILSSLICSSAYAGITISPELKLGPYKGAGIQVGLTNTLGFDAVFAELAKTRYESKIYDEEIYSYRVGFQQMFGASKQHGFQASLGLAQYDGYLREEHKTANGLSIGGSYVFQANQHLFLRAGVDFNVFDTNATYIPSDTSPNFNLGFGLRF
>NC_004459.3|WP_011078558.1|455664_456363_-|phosphate-signaling-complex-protein-PhoU
MHFGRHISGQFNVELESIRTHVLTMGGLVEQQLSFAMQALHNDDIDLARRVVRDDHKVNAMEVSIDDACTRIIAKRQPTAKDLRLIMAIIKTITDLERIGDVATKMAYVAIESPSSKERQFNVSLEPLARQAIQMLHLVLDAFARMDVDAAAEVHKMDDKIDAEYEAVIRQLMTYMMENPKNIPNILQVMWSARAIERVGDRCQNICEYIIYFVKGKDVRHLGDQGINDALR
>NC_004459.3|WP_011078559.1|456387_457206_-|phosphate-ABC-transporter-ATP-binding-protein
MYSFNDTLGYHAPLDVNNLPDDKTAITIENLDLHYGQSQALYDISMRIPKGRVTAFIGPSGCGKSTLLRCINRMNDLVEGCKVTGSVKLYGSNVYDPSVDVATLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGVKNSRTLDDAVERSLRSAALWDEVKDRLHENAFGLSGGQQQRLVIARAVAIEPEVLLLDEPTSALDPISTLTIEELINDLKTQYTVVIVTHNMQQAARVSDYTAFIHMGKLIEYSDADTIFTSPMKKQTEDYITGRYG
>NC_004459.3|WP_011078560.1|457207_458878_-|phosphate-ABC-transporter-permease-PstA
MLKWIRSGAPWIWLTGGAVSISLLSVLALLLLIGWKGLNYFWPAPVYQWTIVKTSPQLSPQTSVGSRVIGQVYQRNQVDYSQLPPSLQAIVQDEQEAVRLKIKVANRGLYPSEFISVLESQLSEPTTPEEIVVFERSSGGDFYGRYLAFRDGDIQTDENIFPLLRDKLEYAERLREEIALVVEQNIKPLSWKLEQLRLDKRRKELNGTLSSEYLQQYQAEREHYEQELANYDQQLDGLRLQLTGYTLLVEEMSGNVISIPLSEILDFWQPNKMNVGDKIVHWGREIWKFLSENPRDSNSAGGVFPAIFGTVFLVLIMSIIVMPLGVIAAIYLHEYAKNNAFTRVIRIAVINLAGVPSIVYGVFGLGFFVYTIGSSIDNLFYAERLPAPTFGTPGLLWSALTLAVLTLPVVIVTTEEGLTRIPNSVRHGSLALGATQFETLWRVVLPMATPAIITGLILAIARAAGEVAPLMLVGVVKLASSLPVDGQFPYIHLERKFMHLGFHIYDVGFQTSNIEAARPLVYATSFLLVTVIVGLNLTAISIRNNLREKYRTLGQD
>NC_004459.3|WP_011078561.1|458905_461098_-|ABC-transporter-permease-subunit
MARAEFTLQTRDKSRLLKDRLVRLAVTSGGVGVLAALVLIFVYLAMVVIPLFSDAKLEPNKLSMPIATKPPVAIAVDDYGLRALTITEDGRLTFWQLDSGEAILETQISENPTAFAKSVSALDSYGFVSQQGLVTLFKPRFNSSLAKSVQRPEVEIYAPSFDFRLAAQGSDIARFAFSNVEPSPTLTWLTNDGRVHVRWQQSVQGEWVQRDFQFATSFDAASQLLITPDGETLYVRSGSELVVAKKRDEQFVVREIVDLTLGDQKHSVRQIDLLAGAYSLLVTHNDGRVSQWFDTRQQNQRKLTHIRDFKLASEVQFLLPDTHRKGFYSFYTNGTLQSHYTTSEKLALFLRAYQQAPQMAAMSNNEQYLLTYFPERLTLATVDNPYPEISLSSLWQKVWYEGYPEPEFVWQSTSASDDFEAKFSIVPIAFGTIKAALFAMLFSVPIAVLGAIYTGYFMAPKMRRIVKPSIELMEAMPTVIIGFLAGLWFAPIVEQHLISVVLLMVVLPLSTVFIGGLWTLLPATIRHRIPNGWHALILIPSMVLVVALGMQFAPELETLFFAGDIRLFLSQHGIGFDQRNAMVVGLAMGFAVIPTIFTIAEDAIFSVPKHLSDGSLALGATAWQTLTHVVILTASPGIFSAIMMGLGRAVGETMIVLMATGNTPLMDWNILEGMRTLSATIAVELPESEVGSSHFRLLFLAALLLFVFTFAVNSLAEWVRQRLRDKYRAL
>NC_004459.3|WP_011078562.1|461295_463398_+|polyphosphate-kinase-1
MSADKFYIEKELSWLSFNERVLQEAADKTVPLIERIRFLGIFSNNLDEFYKVRFSDVKRRILINREQGGNDISKHLLSKMQSKALKLNERFDELYNELIRDMARRHIFLVNESQLDEAQQKWIIKYFQKEVLPHITPLMLTDEIDVLQFLKDEYAYIAVELKQQEQAKYALLEIPTDHLPRFIMVPEQKGKRKKTIILLDNIIRFCLNDIFRGFFDYDELNGYAMKMTRDAEYDLRHEVEYSLLEQMSEGLSQRLTALPVRFVYERDMPEDMLKYLCYKLKISHYDSLIPGGRYHNFKDFIAFPNVGRDYLENKPLPPLACADFEGYANAFDAIRNQDILLHYPYHSFEHITELVRQASFDPKVVSIKINVYRVAKNSRLMNSLIDAVHNGKRVTVVVELQARFDEEANIEWSKLLTDAGVHVIFGVPGMKIHAKLLLITRREEQGFVRYAHIGTGNFHERTARIYTDFSLLTADQELAAEVRGVFSYIMNPFRPIKFRHLIVSPRNSRSQLYRLLDREIHNAQAGKKASITLKVNNLVDKGLISKLYAASSAGVKIRMIIRGMCSLVPGLEGISENIEIISIIDRFLEHPRVLVVHNDGDPQVFISSADWMERNIDNRIEVMSPVRDARIKQRIIDILSIQFTDTVKARRIDKEMSNNYVERGNRKKIRSQIAIYDYLKNVEKHTRKQKGQVEPNDNNQ
>NC_004459.3|WP_011078563.1|463381_464881_+|exopolyphosphatase
MTTTNSRDIAAIDLGSNSFHMVVAKVVDEDLQLISRHKQRVHLADGLDMEMNLSHSAMERGLECLAMFAERLQGFEPENVRIAATHTLRQARNAHLFLQRAKQVLPFPIEIIPGEEEARLIYLGVAHTQLEVSSKLVVDIGGGSTEMIIGKDFEPELLNSKQMGCVSFTSRYFANGKMTKKNFNKAMVACEQKLESIASQYRKKGWEIAYGSSGSIKAIREVLVGIGFEDGLITQARLNTLMDMLCSFETIDDIQLPGLTDERKPVFAAGVAILSAIIQTLKISEMHYSDGALREGLLYEMEARFARSDLRMRTTENLAKKHLVDLEHAARVKGLAIELLEQAHKPLGIKRESELATLLEWAALLHEVGLSISLRGFHRHSAYILQHTNMPGFNSEQQLLLAFLTRYQRKSLKLTELPDFHLYSREQVINLIRILRLAILINGQRNDDPLPEFHLQVKENHWTLQGKETDWQENNKLLSADLQSEQERWQQVNWQLELD
>NC_004459.3|WP_011078564.1|464932_465886_-|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein
MKRWWLSLLLMGGISASAQALDTPLQPYKKIPGVSGNLLSVGSDTLAGMTTLWVEEFKALYPNINAQVQASGSSTAPPALTEQTAQFGPMSRPMRLREVEAFERTHGYKPTALRVAIDAIGIFVHQDNPVQGLNFPQLDAIFSATLRCGAEDFVSTWAQLGIDAEWAKRNFQLFGRNSVSGTYGYFKKHALCGGDFKSQVNEQPGSASVVQSVASTLSGIGYSGVGYRVAGVRLLPIAKQGNEFVYPSRENILTGDYPLSRYLYVYVNKHPSKALSPIEAEFIKFIYSAQGQALVEKDGYVSITEEFAKQELAKVGL
>NC_004459.3|WP_011078565.1|465882_467181_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MVERLTWKKLAWELAFFYTPWVIVGWIFGYMPWLLLVATALQLGWHLHNQVRLSAWLWDEKRLTPPSGSGNWESLFNGLYRLQQRQRRKRKELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLLRTPDFIKYLSGNDFSEPLEMCSPLNVERTLELRIVPYTEGEHLMVVRDVTQLKQLEGMRRNFFANVSHELRTPMTVLQGYLEMTEDPDMLVGPMWGKAHRVMTEQLNRMNSLVNQLLTLSKIEASPIHELDEVVDVPAMLEVLEKEAVSLSGDNQHAISFQVDKALKVYADEDQLRSAISNLVYNAVKYTPAGASVQVRWYRNSKGACLEVEDSGDGIEPQHIHRLTERFYRVDKARSRDTGGSGLGLAIVKHALTHHDTHLDIQSKVGSGSKFSFVLPAKLVAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

46829 : 131384

Vibrio_phage(28.57%)

plate,tRNA,protease,tail,integrase

attL 68395:68454|attR 110788:110847

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011078165.1\|46829_49847_-\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
WP_011078166.1\|50129_51386_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011078167.1\|51410_52481_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011078168.1\|52511_52901_-	hypothetical protein	NA	NA	NA	NA
WP_043920892.1\|52945_53698_+	beta-ketoacyl synthase chain length factor	NA	NA	NA	NA
WP_011078170.1\|53694_54453_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011078171.1\|54547_54808_+	acyl carrier protein	NA	NA	NA	NA
WP_011078172.1\|54824_55079_+	acyl carrier protein	NA	NA	NA	NA
WP_011078173.1\|55082_55640_+	septation protein IspZ	NA	NA	NA	NA
WP_011078174.1\|55647_57015_+	acyl-CoA synthetase	NA	NA	NA	NA
WP_011078175.1\|57027_57399_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_011078176.1\|57391_59101_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_011078177.1\|59078_60623_+	aromatic amino acid lyase	A0A1V0S940	Catovirus	7.7e-58	31.8
WP_011078178.1\|60631_61078_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_043920893.1\|61047_61704_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_011078180.1\|61693_64003_+	MMPL family transporter	NA	NA	NA	NA
WP_043920894.1\|63999_64608_+	DUF3261 domain-containing protein	NA	NA	NA	NA
WP_011078182.1\|64617_65805_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_011078183.1\|65797_66262_+	hotdog family protein	NA	NA	NA	NA
WP_011078184.1\|66258_66984_+	3-oxoacyl-ACP reductase FabG	A0A0N9R355	Chrysochromulina_ericina_virus	3.1e-09	23.9
WP_011078185.1\|66980_68210_+	beta-ketoacyl-ACP synthase	NA	NA	NA	NA
68395:68454	attL	NA	NA	NA	NA
WP_039549357.1\|69734_69929_-	hypothetical protein	NA	NA	NA	NA
WP_011078188.1\|70129_70645_-	PadR family transcriptional regulator	K7R9C0	Vibrio_phage	6.4e-09	39.3
WP_011078189.1\|70656_71277_-	HNH endonuclease	A0A1S5SAI9	Streptococcus_phage	8.5e-24	37.6
WP_011078190.1\|71269_71506_-	hypothetical protein	A0A1V0E8D1	Vibrio_phage	1.9e-13	48.7
WP_043920895.1\|71539_71791_-	hypothetical protein	NA	NA	NA	NA
WP_011078192.1\|71783_72038_-	hypothetical protein	U3PIK2	Vibrio_phage	3.6e-05	33.8
WP_011078193.1\|72030_72270_-	DUF3850 domain-containing protein	R9TIU2	Vibrio_phage	7.5e-13	56.3
WP_011078194.1\|72273_72837_-	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	5.1e-52	57.5
WP_011078195.1\|72848_75608_-	toprim domain-containing protein	E5E3T2	Burkholderia_phage	5.8e-266	50.2
WP_133295494.1\|75573_75879_-	hypothetical protein	NA	NA	NA	NA
WP_011078197.1\|75862_76162_-	hypothetical protein	NA	NA	NA	NA
WP_011078198.1\|76154_76466_-	hypothetical protein	NA	NA	NA	NA
WP_011078199.1\|76476_76692_-	hypothetical protein	NA	NA	NA	NA
WP_011078200.1\|76679_77384_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011078201.1\|77413_77893_-	hypothetical protein	NA	NA	NA	NA
WP_011078202.1\|78084_78273_-	hypothetical protein	NA	NA	NA	NA
WP_011078203.1\|78408_79215_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158306836.1\|79486_79798_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011078205.1\|79781_81095_-	hypothetical protein	NA	NA	NA	NA
WP_011078206.1\|81167_82175_-	hypothetical protein	D4HTW7	Vibrio_phage	1.5e-41	36.0
WP_011078207.1\|82165_82372_-\|tail	tail protein X	NA	NA	NA	NA
WP_011078208.1\|82368_82764_-\|tail	phage tail protein	D4HTW5	Vibrio_phage	1.4e-19	39.3
WP_011078209.1\|82772_84899_-	hypothetical protein	A0A2P9JZK0	Alteromonadaceae_phage	1.7e-76	42.9
WP_011078210.1\|84939_85350_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_011078211.1\|85359_85875_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	1.4e-16	34.9
WP_011078212.1\|85886_87047_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A1B2LRR3	Wolbachia_phage	1.0e-70	39.3
WP_011078214.1\|87479_89810_-\|tail	phage tail protein	A0A2I7RNJ3	Vibrio_phage	1.2e-51	68.6
WP_011078215.1\|89814_90465_-\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	1.9e-21	37.3
WP_011078216.1\|90461_91322_-\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	5.6e-34	33.4
WP_011078217.1\|91318_91666_-	dTDP-glucose pyrophosphorylase	NA	NA	NA	NA
WP_017788792.1\|91669_91957_-	PAAR domain-containing protein	G3MBI0	Bacillus_virus	3.1e-13	43.0
WP_011078218.1\|91931_92417_-	hypothetical protein	NA	NA	NA	NA
WP_011078219.1\|92418_93042_-\|plate	phage baseplate assembly protein V	D4HTV0	Vibrio_phage	4.5e-09	38.3
WP_011078220.1\|93041_93575_-	hypothetical protein	NA	NA	NA	NA
WP_011078221.1\|93574_94075_-	hypothetical protein	NA	NA	NA	NA
WP_011078222.1\|94067_94673_-	hypothetical protein	NA	NA	NA	NA
WP_011078223.1\|94681_94978_-	hypothetical protein	NA	NA	NA	NA
WP_011078224.1\|94967_95564_-	hypothetical protein	A0A1D9CA16	Salinivibrio_phage	9.5e-57	57.7
WP_011078225.1\|95613_96204_-	hypothetical protein	NA	NA	NA	NA
WP_011078226.1\|96278_98855_-	hypothetical protein	NA	NA	NA	NA
WP_011078227.1\|98964_99402_-	hypothetical protein	NA	NA	NA	NA
WP_011078228.1\|99407_99983_-	SocA family protein	I6R0L8	Salmonella_phage	2.6e-19	37.8
WP_043920897.1\|100190_100520_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011078230.1\|100488_100725_-	hypothetical protein	NA	NA	NA	NA
WP_133295493.1\|100703_101093_-	hypothetical protein	NA	NA	NA	NA
WP_011078232.1\|101321_101861_+	hypothetical protein	NA	NA	NA	NA
WP_011078233.1\|101865_102054_-	hypothetical protein	NA	NA	NA	NA
WP_011078234.1\|102150_103239_-	hypothetical protein	NA	NA	NA	NA
WP_011078235.1\|103244_104624_-	hypothetical protein	NA	NA	NA	NA
WP_043921070.1\|104620_106219_-	hypothetical protein	NA	NA	NA	NA
WP_011078237.1\|106211_107177_-	hypothetical protein	NA	NA	NA	NA
WP_011078238.1\|107173_107869_-	hypothetical protein	NA	NA	NA	NA
WP_011078239.1\|108169_108412_-	co-chaperone GroES	NA	NA	NA	NA
WP_011078240.1\|108408_109455_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_043920898.1\|110094_110658_+	N-acetylmuramidase	A0A286N2Q6	Klebsiella_phage	5.5e-46	52.5
WP_011078242.1\|110907_112164_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
110788:110847	attR	NA	NA	NA	NA
WP_011078243.1\|112135_112804_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-26	34.8
WP_011078244.1\|112895_114089_+	hypothetical protein	NA	NA	NA	NA
WP_011078245.1\|114277_115477_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_011078246.1\|115701_116646_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011078247.1\|116691_117663_-	lytic murein transglycosylase	NA	NA	NA	NA
WP_011078248.1\|117713_117995_-	YcgL domain-containing protein	NA	NA	NA	NA
WP_011078249.1\|118170_118833_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_011078251.1\|119672_119936_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_123772747.1\|120018_121134_-	ribonuclease D	NA	NA	NA	NA
WP_011078253.1\|121221_122919_-	long-chain-fatty-acid--CoA ligase FadD	Q75ZG1	Hepacivirus	1.3e-42	26.3
WP_011078254.1\|123040_123895_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_011078255.1\|123894_124449_-	Slp family lipoprotein	NA	NA	NA	NA
WP_011078256.1\|124490_124796_-	hypothetical protein	NA	NA	NA	NA
WP_011078257.1\|124821_125523_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	A0A0R6PI74	Moraxella_phage	8.1e-07	38.5
WP_011078258.1\|125523_127443_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	6.6e-91	31.9
WP_011078259.1\|127540_127741_-	hypothetical protein	NA	NA	NA	NA
WP_011078260.1\|127936_128770_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	1.9e-15	34.2
WP_011078261.1\|128833_129430_-	VOC family protein	NA	NA	NA	NA
WP_011078262.1\|129650_131384_+\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	7.5e-86	34.9

DBSCAN-SWA_2

427789 : 434844

Powai_lake_megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011078529.1\|427789_428215_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	5.1e-20	41.4
WP_011078530.1\|428278_429577_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	6.5e-34	32.8
WP_011078531.1\|429729_429924_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_011078532.1\|430005_430344_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011078533.1\|430355_432209_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.1e-106	39.0
WP_011078534.1\|432230_432746_-	co-chaperone HscB	NA	NA	NA	NA
WP_011078535.1\|432806_433130_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.4e-25	53.3
WP_011078536.1\|433202_433586_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.0e-52	77.4
WP_011078537.1\|433629_434844_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	3.7e-31	32.1

DBSCAN-SWA_3

1552919 : 1568161

uncultured_Mediterranean_phage(22.22%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011079513.1\|1552919_1554221_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-131	58.5
WP_011079514.1\|1554465_1554747_+	cell division protein FtsB	NA	NA	NA	NA
WP_011079515.1\|1554746_1555460_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011079516.1\|1555456_1555933_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011079517.1\|1555968_1557012_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_011079518.1\|1557017_1557785_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-68	51.4
WP_011079519.1\|1557787_1558414_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-38	53.6
WP_011079520.1\|1558457_1559354_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.5e-13	34.1
WP_011079521.1\|1559434_1560427_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.2e-35	34.8
WP_011079522.1\|1560502_1563064_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.3e-30	22.2
WP_011079523.1\|1563147_1563651_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.4e-24	43.9
WP_011079524.1\|1563784_1564834_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-111	60.1
WP_011079525.1\|1564937_1565399_+	recombination regulator RecX	NA	NA	NA	NA
WP_011079526.1\|1565578_1568161_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	6.6e-78	37.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage